Citrus Sinensis ID: 031378

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MSCLFIVAANFLSIYISYKLASYFRDKFVCFFLVVLYIKRRLNCLLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPLHLFL
Secondary Structure (PSIPRED)
ccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHccccccccccHHEEEEEEcccccccccccEEEccEEcccccccccHHHHHHHHcHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHEEEEHHccccccccccEEEEccEEcccccccccHHHHHHHHcHHHcccccccccccHccc
Coil and Loop (DISEMBL)
MSCLFIVAANFLSIYISYKLASYFRDKFVCFFLVVLYIKRRLNCLLEIVQQEkfynaptqnmtRTAVVKEIVKFAAEGIGnsyssalesgfsdrstdlltrvsfkfsatrgvyatptffvngfslagagspldyngwrkvidpllsekgkkrevplhlfl
Flexible Loop (DISEMBL)
MSCLFIVAANFLSIYISYKLASYFRDKFVCFFLVVLYIKRRLNCLLEIVQQekfynaptqnmtrTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDpllsekgkkrevplhlfl
Low Complexity Region (SEG)
MSCLFIVAANFLSIYISYKLASYFRDKFVCFFLVVLYIKRRLNCLLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPLHLFL
Disordered region (IsUnstruct)
**CLFIVAANFLSIYISYKLASYFRDKFVCFFLVVLYIKRRLNCLLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL***************
Disordered Region (DISOPRED)
*SCLFIVAANFLSIYISYKLASYFRDKFVCFFLVVLYIKRRLNCLLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLS*********LHLFL
Disordered Region (DISEMBL)
MSCLFIVAANFLSIYISYKLASYFRDKFVCFFLVVLYIKRRLNCLLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPLHLFL
Disordered Region (DISPRO)
*SCLFIVAANFLSIYISYKLASYFRDKFVCFFLVVLYIKRRLNCLLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKG*****P*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSCLFIVAANFLSIYISYKLASYFRDKFVCFFLVVLYIKRRLNCLLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPLHLFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
224085938	212	predicted protein [Populus trichocarpa]	0.725	0.547	0.609	2e-34
255539052	362	conserved hypothetical protein [Ricinus	0.65	0.287	0.657	2e-34
224061957	223	predicted protein [Populus trichocarpa]	0.706	0.506	0.591	2e-30
8778978	538	Contains similarity to pigpen protein fr	0.593	0.176	0.621	2e-28
22329686	233	TRX domain-containing protein [Arabidops	0.706	0.484	0.55	5e-28
359492074	234	PREDICTED: uncharacterized protein LOC10	0.768	0.525	0.515	7e-28
297850426	529	hypothetical protein ARALYDRAFT_312946 [	0.656	0.198	0.575	9e-28
81076617	224	unknown [Solanum tuberosum]	0.781	0.558	0.492	3e-27
351726088	236	uncharacterized protein LOC100500267 pre	0.687	0.466	0.513	4e-27
449450508	236	PREDICTED: uncharacterized protein LOC10	0.681	0.461	0.549	5e-27

>gi|224085938|ref|XP_002307747.1| predicted protein [Populus trichocarpa] gi|222857196|gb|EEE94743.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 90/123 (73%), Gaps = 7/123 (5%)

Query: 36  LYIKRRLNC-----LLE--IVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALE 88
           L+I   LN      LLE     QEKFYNA T N+++T++V+EIVKFA   +GNSYSSA E
Sbjct: 82  LHIANTLNSSFTFPLLEEFFKHQEKFYNAKTSNLSKTSIVEEIVKFATVAVGNSYSSAFE 141

Query: 89  SGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148
           SGF+DR TDL TRVSFK+S +RGV+ TP FFVNGF L  AGSPLDYNGWR +IDPL+  K
Sbjct: 142 SGFNDRQTDLKTRVSFKYSTSRGVFGTPFFFVNGFVLPDAGSPLDYNGWRSIIDPLVGAK 201

Query: 149 GKK 151
             +
Sbjct: 202 SSQ 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539052|ref|XP_002510591.1| conserved hypothetical protein [Ricinus communis] gi|223551292|gb|EEF52778.1| conserved hypothetical protein [Ricinus communis]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 87/105 (82%), Gaps = 1/105 (0%)

Query: 50  QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSAT 109
            QE+FYNA T+N++R +VVK+IV+FA+  IGNSY SA+ESGF+DR TDL TRVSFK+S +
Sbjct: 123 HQERFYNAQTRNLSRVSVVKDIVEFASVAIGNSYHSAIESGFNDRETDLQTRVSFKYSTS 182

Query: 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL-SEKGKKRE 153
           RGV+ TPTF++NGF L  AGS LDYNGWRK IDPL+ ++KGK  E
Sbjct: 183 RGVFGTPTFYINGFVLPDAGSTLDYNGWRKFIDPLINAKKGKSEE 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061957|ref|XP_002300683.1| predicted protein [Populus trichocarpa] gi|222842409|gb|EEE79956.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 86/120 (71%), Gaps = 7/120 (5%)

Query: 36  LYIKRRLNC-----LLE--IVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALE 88
           L+I   LNC     LLE     QEKFY + T N+++ ++VKEIVKFA   +G+SYSS L+
Sbjct: 104 LHIANILNCSFTFPLLEQFFKHQEKFYGSETSNLSKDSIVKEIVKFATVIVGDSYSSPLQ 163

Query: 89  SGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148
            GF+D  TDL TRVSFK+SA+RGVYATP FFVNGF L GAGS LDY  WR +IDPL+  K
Sbjct: 164 FGFNDIQTDLKTRVSFKYSASRGVYATPFFFVNGFGLPGAGSALDYKVWRSIIDPLVGAK 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778978|gb|AAF79893.1|AC022472_2 Contains similarity to pigpen protein from Mus musculus gb|AF224264 and contains protein of unknown function DUF78 PF|01918 domain. ESTs gb|N38077, gb|BE037702, gb|AV442191, gb|AV441368, gb|Z17998, gb|AV527266, gb|AV520794, gb|AI997847, gb|AV543000 come from this gene [Arabidopsis thaliana]

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/95 (62%), Positives = 71/95 (74%)

Query: 50  QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSAT 109
            Q  FYN+ TQ M+R AVV+E++K     +GNSY S L+SGFS+  +DL TRVSFK+S +
Sbjct: 117 HQTLFYNSQTQLMSRPAVVEELIKLGTVTLGNSYHSPLKSGFSNSKSDLATRVSFKYSVS 176

Query: 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPL 144
           RGV ATPTF+VNGF L GAGSP DY GWR  IDPL
Sbjct: 177 RGVSATPTFYVNGFELPGAGSPKDYEGWRDTIDPL 211

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329686|ref|NP_683315.1| TRX domain-containing protein [Arabidopsis thaliana] gi|17065544|gb|AAL32926.1| Unknown protein [Arabidopsis thaliana] gi|24899723|gb|AAN65076.1| Unknown protein [Arabidopsis thaliana] gi|332191831|gb|AEE29952.1| TRX domain-containing protein [Arabidopsis thaliana]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 82/120 (68%), Gaps = 7/120 (5%)

Query: 36  LYIKRRLNC-----LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALE 88
           L+I   LN      LLE +   Q  FYN+ TQ M+R AVV+E++K     +GNSY S L+
Sbjct: 97  LHIVDTLNANATFNLLEGIFKHQTLFYNSQTQLMSRPAVVEELIKLGTVTLGNSYHSPLK 156

Query: 89  SGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148
           SGFS+  +DL TRVSFK+S +RGV ATPTF+VNGF L GAGSP DY GWR  IDPL+  +
Sbjct: 157 SGFSNSKSDLATRVSFKYSVSRGVSATPTFYVNGFELPGAGSPKDYEGWRDTIDPLVKPQ 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492074|ref|XP_003634361.1| PREDICTED: uncharacterized protein LOC100854733 [Vitis vinifera]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 89/132 (67%), Gaps = 9/132 (6%)

Query: 36  LYIKRRLNC-----LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALE 88
           L+I  +LN      LLE++   QE FYN  T NM+RTA+V  IVKF ++ +G S  SA++
Sbjct: 105 LHIVNKLNSSATYHLLEMLFKHQEIFYNQITVNMSRTAIVDCIVKFVSKAVGESLFSAIK 164

Query: 89  SGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148
           SGFSDR TDL TRVSFK+  +RGV  TP FFVNGF L   GS ++Y+ WR ++DPL+S+ 
Sbjct: 165 SGFSDRQTDLTTRVSFKYGCSRGVLGTPYFFVNGFPLPDPGSAINYSKWRSILDPLVSDS 224

Query: 149 GKKREVPLHLFL 160
            K+    LH FL
Sbjct: 225 VKRET--LHFFL 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850426|ref|XP_002893094.1| hypothetical protein ARALYDRAFT_312946 [Arabidopsis lyrata subsp. lyrata] gi|297338936|gb|EFH69353.1| hypothetical protein ARALYDRAFT_312946 [Arabidopsis lyrata subsp. lyrata]

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/106 (57%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 50  QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSAT 109
            Q  FYN+ TQ M+R AVV  ++K     +GNSY S L SGFS+  +DL TRVSFK+S +
Sbjct: 118 HQALFYNSQTQLMSRPAVVDNLIKLGTVTLGNSYHSPLISGFSNSKSDLATRVSFKYSVS 177

Query: 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVP 155
           RGV ATPTF+VNGF L GAGSP DY GWR  IDPL+ +K ++ E P
Sbjct: 178 RGVSATPTFYVNGFELPGAGSPKDYEGWRDTIDPLM-DKYQRVEKP 222

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|81076617|gb|ABB55396.1| unknown [Solanum tuberosum]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 86/132 (65%), Gaps = 7/132 (5%)

Query: 36  LYIKRRLNC-----LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALE 88
           L+I  +LN      LLE    QQ+KFYN  T N+++ +VV E+VKF +  IGNS  +A++
Sbjct: 93  LHIVNKLNSSATFRLLEAFFDQQDKFYNQATFNLSKASVVDEVVKFTSNKIGNSNYAAVK 152

Query: 89  SGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148
           +GF+D  TD  TR+SFK+   +GVY  P FFVNGF L   GSPLDY  WR VIDPL+S +
Sbjct: 153 AGFTDPKTDQATRISFKYGCVKGVYGAPFFFVNGFPLPDGGSPLDYKTWRDVIDPLISPE 212

Query: 149 GKKREVPLHLFL 160
            + R   L+ FL
Sbjct: 213 EQLRAENLNFFL 224

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726088|ref|NP_001235579.1| uncharacterized protein LOC100500267 precursor [Glycine max] gi|255629877|gb|ACU15289.1| unknown [Glycine max]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 82/113 (72%), Gaps = 3/113 (2%)

Query: 51  QEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATR 110
           QE FY A T+N++R ++++E+VK A + +G+SY   +++GF+D +TD+ TRVSFK++A+R
Sbjct: 124 QENFYGAQTRNLSRASIIEEVVKSATQVVGSSYYKTIKNGFNDTTTDIQTRVSFKYAASR 183

Query: 111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKK---REVPLHLFL 160
           GVY TP F+VNGF L   G+ +DY  WRKVIDPL+  K KK    E  LH FL
Sbjct: 184 GVYGTPFFYVNGFLLPDTGAAVDYKTWRKVIDPLVGAKNKKSIQNEESLHFFL 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450508|ref|XP_004143004.1| PREDICTED: uncharacterized protein LOC101216804 isoform 1 [Cucumis sativus] gi|449450510|ref|XP_004143005.1| PREDICTED: uncharacterized protein LOC101216804 isoform 2 [Cucumis sativus] gi|449521601|ref|XP_004167818.1| PREDICTED: uncharacterized protein LOC101231840 isoform 1 [Cucumis sativus] gi|449521603|ref|XP_004167819.1| PREDICTED: uncharacterized protein LOC101231840 isoform 2 [Cucumis sativus]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 78/111 (70%), Gaps = 2/111 (1%)

Query: 50  QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSAT 109
            Q++FYNA T+ ++R A+V  +VKF  E +G+SY + L +GF+DR TDLLTRVSFKFS +
Sbjct: 128 DQKQFYNAETRYLSRAAIVDSMVKFGVEVLGDSYKNTLVTGFNDRETDLLTRVSFKFSTS 187

Query: 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVPLHLFL 160
           RGVY TP FF+NGF     GSPL+Y  WR +IDPL+  K  KR    HL L
Sbjct: 188 RGVYGTPFFFINGFLAPDKGSPLNYTEWRNLIDPLI--KKNKRSGSQHLSL 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:504956159	233	AT1G20225 "AT1G20225" [Arabido	0.631	0.433	0.601	8.2e-28
TAIR|locus:2204415	225	AT1G76020 "AT1G76020" [Arabido	0.593	0.422	0.589	3.5e-27

TAIR|locus:504956159 AT1G20225 "AT1G20225" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 62/103 (60%), Positives = 76/103 (73%)

Query:    45 LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRV 102
             LLE +   Q  FYN+ TQ M+R AVV+E++K     +GNSY S L+SGFS+  +DL TRV
Sbjct:   111 LLEGIFKHQTLFYNSQTQLMSRPAVVEELIKLGTVTLGNSYHSPLKSGFSNSKSDLATRV 170

Query:   103 SFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL 145
             SFK+S +RGV ATPTF+VNGF L GAGSP DY GWR  IDPL+
Sbjct:   171 SFKYSVSRGVSATPTFYVNGFELPGAGSPKDYEGWRDTIDPLV 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2204415 AT1G76020 "AT1G76020" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 56/95 (58%), Positives = 74/95 (77%)

Query:    51 QEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATR 110
             Q  FYNA TQ ++R AVV++IV+     +GNSY S L+SGFSD+ +D  TRVSFK+SA+R
Sbjct:   118 QSLFYNAQTQLLSRPAVVEKIVELGTVSLGNSYQSVLKSGFSDKKSDRATRVSFKYSASR 177

Query:   111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL 145
             GVY TPTF+VNGF L+ A SP ++ GW+K+IDPL+
Sbjct:   178 GVYGTPTFYVNGFVLSDAASPSNFGGWKKIIDPLV 212


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.139   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      160       160   0.00097  106 3  11 22  0.43    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  132 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.83u 0.18s 15.01t   Elapsed:  00:00:01
  Total cpu time:  14.83u 0.18s 15.01t   Elapsed:  00:00:01
  Start:  Fri May 10 23:30:09 2013   End:  Fri May 10 23:30:10 2013

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_V1891 hypothetical protein (212 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	99.4
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	99.37
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	99.3
COG3531	212	Predicted protein-disulfide isomerase [Posttransla	99.29
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	99.28
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	99.26
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	99.22
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	99.17
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	99.17
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	99.11
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	99.05
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	98.83
COG3917	203	NahD 2-hydroxychromene-2-carboxylate isomerase [Se	98.31
cd03021	209	DsbA_GSTK DsbA family, Glutathione (GSH) S-transfe	98.23
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.98
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.63
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.33
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.18
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	96.89
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.58
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	96.37
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	96.29
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	96.26
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	95.92
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	95.85
PRK10996	139	thioredoxin 2; Provisional	95.71
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	95.55
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	95.51
PRK09381	109	trxA thioredoxin; Provisional	95.45
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	95.4
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	95.27
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	95.17
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	95.05
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	94.8
PRK11200	85	grxA glutaredoxin 1; Provisional	94.77
cd02947	93	TRX_family TRX family; composed of two groups: Gro	94.52
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	94.48
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	94.28
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	94.23
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	94.01
COG2143	182	Thioredoxin-related protein [Posttranslational mod	94.01
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	94.0
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	93.94
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	93.81
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	93.79
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	93.68
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	93.5
PHA02278	103	thioredoxin-like protein	93.29
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	93.19
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	93.17
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	92.9
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	92.6
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	92.59
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	92.55
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	92.3
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	92.25
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	92.22
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	92.14
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	91.84
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	91.67
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	91.59
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	91.38
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	91.21
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	91.14
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	90.89
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	90.54
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	90.48
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	90.29
PHA02125	75	thioredoxin-like protein	90.18
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	89.93
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	89.73
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	89.01
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	88.85
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	88.52
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	88.52
COG3118	304	Thioredoxin domain-containing protein [Posttransla	88.36
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	88.35
PTZ00051	98	thioredoxin; Provisional	87.83
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	87.83
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	87.45
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	87.23
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	87.01
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	86.66
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	86.26
PTZ00102	477	disulphide isomerase; Provisional	86.11
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	84.64
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	84.47
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	84.47
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	83.21
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	83.15
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	82.31
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	82.3
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	82.02
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	82.0
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	82.0
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	81.65
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	81.57
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	81.51
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	81.16
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	81.13
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	80.97
PTZ00056	199	glutathione peroxidase; Provisional	80.82

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.40  E-value=7.3e-12  Score=101.13  Aligned_cols=117  Identities=15%  Similarity=0.253  Sum_probs=99.8

Q ss_pred             hhHHHHHHHHHhhhh-HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHH
Q 031378           30 CFFLVVLYIKRRLNC-LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKF  106 (160)
Q Consensus        30 ~~a~ra~~aar~~~~-~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~  106 (160)
                      ..|||+.+.|+..|+ ...++  -|++|+.. +.|.+..+++-.|+..+    ||| .+.|++.+.+.+....++.+.+.
T Consensus       103 ~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~e-g~nI~D~dVL~diA~~~----GLD-~~~~~~~L~s~~~~~avr~d~~~  176 (225)
T COG2761         103 LDAHRLIKAAELQGKAQDRFLEALFEAYFEE-GRNIGDEDVLADIAEEV----GLD-REEFKADLASDAAKDAVRQDEAA  176 (225)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHhcc-CCCCCcHHHHHHHHHHh----CCC-HHHHHHHHhChHHHHHHHHHHHH
Confidence            399999999999997 44555  68888776 67888887766666554    999 69999999999999999999999


Q ss_pred             hhcCCccccceEEE-CCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCcc
Q 031378          107 SATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREVP  155 (160)
Q Consensus       107 a~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~~  155 (160)
                      +++.||+|.|||++ +|..++|+.+   ++.+...|+.+++.+.+.+..|
T Consensus       177 A~e~gI~gVP~fv~d~~~~V~Gaq~---~~v~~~al~~~~~~~~~~~~~~  223 (225)
T COG2761         177 AQEMGIRGVPTFVFDGKYAVSGAQP---YDVLEDALRQLLAEKAEEHKPP  223 (225)
T ss_pred             HHHCCCccCceEEEcCcEeecCCCC---HHHHHHHHHHHHhcccccCCCC
Confidence            99999999999999 7888999888   9999999999998885544443

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=99.37  E-value=4.4e-12  Score=98.74  Aligned_cols=104  Identities=12%  Similarity=0.159  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHHhhhhHHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHh
Q 031378           30 CFFLVVLYIKRRLNCLLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFS  107 (160)
Q Consensus        30 ~~a~ra~~aar~~~~~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a  107 (160)
                      .+|||++.+++..+...+..  -+..+|.. +.+.+..+.+..++   .+ +|+| .++|.+++++.+....++.+.+.+
T Consensus        95 ~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~-~~~i~~~~~l~~~a---~~-~Gld-~~~~~~~~~~~~~~~~~~~~~~~a  168 (201)
T cd03024          95 FDAHRLIHLAKEQGKQDALVEALFRAYFTE-GKDIGDRDVLVDLA---EE-AGLD-AAEARAVLASDEYADEVRADEARA  168 (201)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHcc-CCCCCCHHHHHHHH---HH-cCCC-HHHHHHHhcCcccchHHHHHHHHH
Confidence            48999999998765422222  33444443 44556555554444   44 4999 599999999999999999999999


Q ss_pred             hcCCccccceEEECCE-EecCCCCCCCHHHHHHHHH
Q 031378          108 ATRGVYATPTFFVNGF-SLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       108 ~~~GV~GTPTffING~-~~~ga~s~~~~e~~~~~Id  142 (160)
                      ++.||.|||||+|||+ .+.|+.+   ++.|.++|+
T Consensus       169 ~~~gv~G~Pt~vv~g~~~~~G~~~---~~~~~~~i~  201 (201)
T cd03024         169 RQLGISGVPFFVFNGKYAVSGAQP---PEVFLQALR  201 (201)
T ss_pred             HHCCCCcCCEEEECCeEeecCCCC---HHHHHHHhC
Confidence            9999999999999977 5677666   999998874

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=99.30  E-value=3.7e-11  Score=92.63  Aligned_cols=103  Identities=17%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             hhhHHHHHHHHHhhh-h---HHHHhchhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHH
Q 031378           29 VCFFLVVLYIKRRLN-C---LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSF  104 (160)
Q Consensus        29 ~~~a~ra~~aar~~~-~---~l~~~~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~  104 (160)
                      ..+|+++..+++..+ .   +.+.+ ...++.. +.+.+..+++.   +.+.+ +|+| .++|++++++.+....++.+.
T Consensus        85 s~~a~~~~~~a~~~~~~~~~~~~~l-f~a~~~~-~~~i~~~~~l~---~~a~~-~Gld-~~~~~~~~~~~~~~~~l~~~~  157 (192)
T cd03022          85 TLRAMRAALAAQAEGDAAEAFARAV-FRALWGE-GLDIADPAVLA---AVAAA-AGLD-ADELLAAADDPAVKAALRANT  157 (192)
T ss_pred             hHHHHHHHHHHHhCchhHHHHHHHH-HHHHhCC-CCCCCCHHHHH---HHHHH-cCCC-HHHHHHHcCCHHHHHHHHHHH
Confidence            358999999998877 4   33332 3334443 34455544444   44444 4999 599999999999999999999


Q ss_pred             HHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I  141 (160)
                      +.++++||+|||||+|||+.+.|..+   ++.+.+.|
T Consensus       158 ~~a~~~gi~gvPtfvv~g~~~~G~~~---l~~~~~~l  191 (192)
T cd03022         158 EEAIARGVFGVPTFVVDGEMFWGQDR---LDMLEEAL  191 (192)
T ss_pred             HHHHHcCCCcCCeEEECCeeeccccc---HHHHHHHh
Confidence            99999999999999999999988666   88776654

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=2.3e-11  Score=96.13  Aligned_cols=119  Identities=18%  Similarity=0.199  Sum_probs=94.8

Q ss_pred             eeccCchh---hhHHHHHHHHHhhhh-H-HHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccC-C
Q 031378           22 SYFRDKFV---CFFLVVLYIKRRLNC-L-LEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFS-D   93 (160)
Q Consensus        22 ~~~~~~~~---~~a~ra~~aar~~~~-~-l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~-~   93 (160)
                      +....+|+   +|+|+|+++|+.+++ - +++|  +|.++|.. +++.++.+++..|+..    +||+ .+.|.+.++ +
T Consensus        79 lL~~~~~v~DSepa~~ai~aA~~l~~r~~l~ml~aIQrA~YvE-Grdi~~t~vl~~laa~----~GL~-~~~f~~~f~~s  152 (212)
T COG3531          79 LLRDTGFVYDSEPACRAILAARLLDGRGRLTMLHAIQRAHYVE-GRDITQTEVLAELAAA----IGLA-AEEFDNAFDQS  152 (212)
T ss_pred             hhcccCccccccHHHHHHHHHHHhCcccchHHHHHHHHHHHhc-cccchhhHHHHHHHHH----cCCC-HHHHHHhcchh
Confidence            34455666   699999999999998 3 7888  99999998 7888898887776655    4999 599999998 6


Q ss_pred             hhHHHHHHHH-HHHhhcCCccccceEEE--CCEEecCCCC--CCCHHHHHHHHHHHhh
Q 031378           94 RSTDLLTRVS-FKFSATRGVYATPTFFV--NGFSLAGAGS--PLDYNGWRKVIDPLLS  146 (160)
Q Consensus        94 ~~~~~~i~~~-~k~a~~~GV~GTPTffI--NG~~~~ga~s--~~~~e~~~~~Id~~l~  146 (160)
                      .+..+....+ ++..+++|++|+|||.+  ||++..-..+  --+.++|...+.+.+.
T Consensus       153 ~~~~~~~~a~~r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~  210 (212)
T COG3531         153 GAARQAHIADSRRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA  210 (212)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence            6655555555 88999999999999999  9998764333  3346899998887764

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=99.28  E-value=2.8e-11  Score=89.35  Aligned_cols=96  Identities=14%  Similarity=0.245  Sum_probs=72.6

Q ss_pred             hhHHHHHHHHHhhhh-----HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHH
Q 031378           30 CFFLVVLYIKRRLNC-----LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRV  102 (160)
Q Consensus        30 ~~a~ra~~aar~~~~-----~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~  102 (160)
                      .++++++.++.+.++     +.+.+  .|.        ..+..    .+.+.+.+ +|++ .++|.+++++......++.
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~--------~~~~~----~l~~~a~~-~gl~-~~~~~~~~~~~~~~~~~~~  117 (154)
T cd03023          52 VLAARVALAVWKNGPGKYLEFHNALMATRG--------RLNEE----SLLRIAKK-AGLD-EAKLKKDMDDPEIEATIDK  117 (154)
T ss_pred             HHHHHHHHHHHHhChhHHHHHHHHHHhcCC--------CCCHH----HHHHHHHH-cCCC-HHHHHHHhhChHHHHHHHH
Confidence            478888877766444     22222  222        11222    34455555 5999 5999999999999999999


Q ss_pred             HHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          103 SFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      +.+.++++||+|||||+|||+.+.|..+   +++|.++|+
T Consensus       118 ~~~~~~~~gi~gtPt~~v~g~~~~G~~~---~~~l~~~i~  154 (154)
T cd03023         118 NRQLARALGITGTPAFIIGDTVIPGAVP---ADTLKEAID  154 (154)
T ss_pred             HHHHHHHcCCCcCCeEEECCEEecCCCC---HHHHHHHhC
Confidence            9999999999999999999999998555   999998875

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=99.26  E-value=5.9e-11  Score=91.44  Aligned_cols=104  Identities=15%  Similarity=0.228  Sum_probs=80.0

Q ss_pred             hhHHHHHHHHHhhhhHHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHh
Q 031378           30 CFFLVVLYIKRRLNCLLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFS  107 (160)
Q Consensus        30 ~~a~ra~~aar~~~~~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a  107 (160)
                      .+|++++.+++..+......  .++.++.. +.+.+..+++..++   .+ +|+| .+++++.+++++....++.+.+.+
T Consensus        87 ~~a~~~~~~a~~~~~~~~~~~al~~a~~~~-~~~i~~~~vl~~~~---~~-~Gld-~~~~~~~~~~~~~~~~~~~~~~~a  160 (193)
T PF01323_consen   87 RPAHRAAYAAQEQGKADAFADALFRAYFVE-GRDISDPDVLAEIA---EE-AGLD-PDEFDAALDSPEVKAALEEDTAEA  160 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-ST-TSSHHHHHHHH---HH-TT---HHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHhc-ccCCCCHHHHHHHH---HH-cCCc-HHHHHHHhcchHHHHHHHHHHHHH
Confidence            58999999999998411222  45666665 56667666554444   44 4999 599999999999999999999999


Q ss_pred             hcCCccccceEEECCE-EecCCCCCCCHHHHHHHHH
Q 031378          108 ATRGVYATPTFFVNGF-SLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       108 ~~~GV~GTPTffING~-~~~ga~s~~~~e~~~~~Id  142 (160)
                      .++||.|+|||+|||+ .+.|..+   ++.+.+.|.
T Consensus       161 ~~~gv~GvP~~vv~g~~~~~G~~~---~~~l~~~l~  193 (193)
T PF01323_consen  161 RQLGVFGVPTFVVNGKYRFFGADR---LDELEDALQ  193 (193)
T ss_dssp             HHTTCSSSSEEEETTTEEEESCSS---HHHHHHHH-
T ss_pred             HHcCCcccCEEEECCEEEEECCCC---HHHHHHHhC
Confidence            9999999999999999 8889777   998888763

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=99.22  E-value=1.5e-10  Score=91.95  Aligned_cols=76  Identities=18%  Similarity=0.232  Sum_probs=62.6

Q ss_pred             HHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCC------CCCHHHHHHHHHHH
Q 031378           71 IVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGS------PLDYNGWRKVIDPL  144 (160)
Q Consensus        71 la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s------~~~~e~~~~~Id~~  144 (160)
                      +.+.+.+ .|+| .++|++++++......++.+.+.++++||+|||||+|||+.+.+..+      .-+.+++.+.|+-+
T Consensus       126 L~~~a~~-~Gld-~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~~~~~~i~~L  203 (207)
T PRK10954        126 IRDVFIK-AGVK-GEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQQYADVVKFL  203 (207)
T ss_pred             HHHHHHH-cCCC-HHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEccccccccchhhhHHHHHHHHHHH
Confidence            4455555 5999 59999999999999999999999999999999999999998765443      22578888988877


Q ss_pred             hhhc
Q 031378          145 LSEK  148 (160)
Q Consensus       145 l~~~  148 (160)
                      +.++
T Consensus       204 ~~k~  207 (207)
T PRK10954        204 LEKK  207 (207)
T ss_pred             HcCC
Confidence            7654

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=99.17  E-value=3.8e-10  Score=85.85  Aligned_cols=109  Identities=16%  Similarity=0.206  Sum_probs=75.9

Q ss_pred             hhhHHHHHHHHHhhhh---HHH-Hh-chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHH
Q 031378           29 VCFFLVVLYIKRRLNC---LLE-IV-QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVS  103 (160)
Q Consensus        29 ~~~a~ra~~aar~~~~---~l~-~~-~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~  103 (160)
                      ..+++++..++...+.   +.+ +| .+..  .  ..+.+..   +.+.+.+.+ +|++ .++|.+++++.++...++.+
T Consensus        62 ~~~aa~a~~aa~~~~~~~~~~~~lf~~~~~--~--~~~~~~~---~~l~~~a~~-~Gl~-~~~~~~~~~s~~~~~~i~~~  132 (178)
T cd03019          62 GEPLARAFYAAEALGLEDKLHAALFEAIHE--K--RKRLLDP---DDIRKIFLS-QGVD-KKKFDAAYNSFSVKALVAKA  132 (178)
T ss_pred             chHHHHHHHHHHHcCcHhhhhHHHHHHHHH--h--CCCCCCH---HHHHHHHHH-hCCC-HHHHHHHHhCHHHHHHHHHH
Confidence            3588888888877655   333 34 3222  1  1122222   234555555 4999 59999999999999999999


Q ss_pred             HHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          104 FKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      .+.+.++||+|||||+|||+.+.+..+.-+.+ +-+.|+.++.+
T Consensus       133 ~~~~~~~gi~gTPt~iInG~~~~~~~~~~~~~-~~~~~~~~~~~  175 (178)
T cd03019         133 EKLAKKYKITGVPAFVVNGKYVVNPSAIGGDD-TLQVLDELIEK  175 (178)
T ss_pred             HHHHHHcCCCCCCeEEECCEEEEChhhccchh-HHHHHHHHHHH
Confidence            99999999999999999999987765433333 66666666554

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=99.17  E-value=1.2e-10  Score=90.81  Aligned_cols=95  Identities=15%  Similarity=0.195  Sum_probs=64.4

Q ss_pred             hhHHHHHHHHHhhhh--HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHH
Q 031378           30 CFFLVVLYIKRRLNC--LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFK  105 (160)
Q Consensus        30 ~~a~ra~~aar~~~~--~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k  105 (160)
                      ++||+|..||+..++  -...+  -|++++.. ..+.+..+++..++   .+ +||| .++|.+++++..+...+..|.+
T Consensus        65 y~a~la~kAA~~qg~k~~~~fL~~lQ~a~~~~-~~~~s~~~~l~~iA---~~-~gLD-~~~F~~d~~S~~~~~~~~~D~~  138 (176)
T PF13743_consen   65 YPACLAYKAAQLQGKKKARRFLRALQEALFLE-GKNYSDEELLLEIA---EE-LGLD-VEMFKEDLHSDEAKQAFQEDQQ  138 (176)
T ss_dssp             HHHHHHHHHHHTTT-H--HHHHHHHHHHHHTS----TTSHHHHHHHH---HH-TT---HHHHHHHHTSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhChhhHHHHHHHHHHHHHhc-CCCCCHHHHHHHHH---HH-hCCC-HHHHHHHHhChHHHHHHHHHHH
Confidence            699999999999988  23444  68887766 45666655544444   44 5999 7999999999999999999999


Q ss_pred             HhhcCCccccceEEE-C------CEEecCCCC
Q 031378          106 FSATRGVYATPTFFV-N------GFSLAGAGS  130 (160)
Q Consensus       106 ~a~~~GV~GTPTffI-N------G~~~~ga~s  130 (160)
                      .|+++||+++||++| |      |.+++|..+
T Consensus       139 la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~  170 (176)
T PF13743_consen  139 LAREMGITGFPTLVIFNENNEEYGILIEGYYS  170 (176)
T ss_dssp             HHHHTT-SSSSEEEEE----------------
T ss_pred             HHHHcCCCCCCEEEEEeccccccccccccccc
Confidence            999999999999999 4      777777544

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=99.11  E-value=3.8e-10  Score=84.46  Aligned_cols=60  Identities=23%  Similarity=0.457  Sum_probs=53.6

Q ss_pred             CCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378           80 GNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus        80 Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      |.+ .++|.+++++..+...+..+.+.+++.||+|||||+|||+.+.+   .+++++|.++||+
T Consensus       103 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~inG~~~~~---~~~~~~l~~~Id~  162 (162)
T PF13462_consen  103 GGS-NEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFINGKYVVG---PYTIEELKELIDK  162 (162)
T ss_dssp             TSH-HHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEETTCEEET---TTSHHHHHHHHHH
T ss_pred             CCC-HHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEECCEEeCC---CCCHHHHHHHHcC
Confidence            555 48899999999999999999999999999999999999999987   6669999999985

...

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=99.05  E-value=9.8e-10  Score=84.86  Aligned_cols=87  Identities=18%  Similarity=0.262  Sum_probs=69.7

Q ss_pred             hhhHHHHHHHHHhhhh--HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHH
Q 031378           29 VCFFLVVLYIKRRLNC--LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSF  104 (160)
Q Consensus        29 ~~~a~ra~~aar~~~~--~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~  104 (160)
                      +.+|++++.+++..++  ..+++  .|.++|.. +.+.+..+++..++   .+ +|+| .++|.++++++++...++.+.
T Consensus        86 s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~-~~~i~~~~~l~~ia---~~-~Gld-~~~~~~~~~s~~~~~~l~~~~  159 (193)
T cd03025          86 SAPASRAIKAARLQGPERLLEMLKAIQRAHYVE-GRDLADTEVLRELA---IE-LGLD-VEEFLEDFQSDEAKQAIQEDQ  159 (193)
T ss_pred             chHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc-CCCCCCHHHHHHHH---HH-cCCC-HHHHHHHHcChHHHHHHHHHH
Confidence            3589999999998886  33444  67777765 55666655554444   33 4999 599999999999999999999


Q ss_pred             HHhhcCCccccceEEEC
Q 031378          105 KFSATRGVYATPTFFVN  121 (160)
Q Consensus       105 k~a~~~GV~GTPTffIN  121 (160)
                      +.+.++||.|||||+|+
T Consensus       160 ~~a~~~gv~g~Ptfvv~  176 (193)
T cd03025         160 KLARELGINGFPTLVLE  176 (193)
T ss_pred             HHHHHcCCCccCEEEEE
Confidence            99999999999999994

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.3e-08  Score=82.03  Aligned_cols=58  Identities=28%  Similarity=0.478  Sum_probs=49.3

Q ss_pred             HHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHh
Q 031378           85 SALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus        85 ~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      +.+..+++....+..+..+.+.|++.||+|||||+|||..+.|..+   .+++.++|+..+
T Consensus       186 ~~~~~~~~~~~~~~~i~~~~~~a~~~gv~gTPt~~v~~~~~~g~~~---~~~l~~~i~~~~  243 (244)
T COG1651         186 EGKKAKLNQKACDALIAKNYKLAQQLGVNGTPTFIVNGKLVPGLPD---LDELKAIIDEAL  243 (244)
T ss_pred             hhhhhccChHHHHHHHHHHHHHHHhcCCCcCCeEEECCeeecCCCC---HHHHHHHHHHhh
Confidence            4555677655678889999999999999999999999998888655   999999999875

>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.31  E-value=9.2e-06  Score=63.84  Aligned_cols=103  Identities=19%  Similarity=0.161  Sum_probs=73.7

Q ss_pred             hhHHHHHHHH-Hhhhh---HHHHhchhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHH
Q 031378           30 CFFLVVLYIK-RRLNC---LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFK  105 (160)
Q Consensus        30 ~~a~ra~~aa-r~~~~---~l~~~~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k  105 (160)
                      ..+.|+..++ +..++   +.+..-..-|.+  +.+.+..++.-++++.+    |+|. .++.+...++++.+.+..+..
T Consensus        95 ~~~~R~~~~~~~~g~~a~~~~~a~lrAlw~d--~~~l~epev~~~vA~~a----GlDg-~al~A~~gd~eik~~l~a~~~  167 (203)
T COG3917          95 LGAARAMIALAMGGGLAEQFAEAVLRALWAD--GQNLGEPEVVYAVANAA----GLDG-AALLALLGDDEIKARLKANTA  167 (203)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhc--ccccCChHHHHHHHHHc----CCCH-HHHHhhcCCHHHHHHHHhhHH
Confidence            4788888885 33333   333223444544  33556666665555554    9995 999999999999999999999


Q ss_pred             HhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+.+.||-|+||||++++.+=|      .+.+..+-++++
T Consensus       168 ~a~srGvfGaPtfivg~q~fwG------qDRL~~lea~L~  201 (203)
T COG3917         168 EAVSRGVFGAPTFIVGDQLFWG------QDRLYQLEAELR  201 (203)
T ss_pred             HHHhcCccCCCeEEECCeeeec------hhHHHHHHHHHh
Confidence            9999999999999999998654      566555444443

>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates

Probab=98.23  E-value=8.6e-06  Score=64.49  Aligned_cols=88  Identities=16%  Similarity=0.109  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHhhhh-----HHHHhchhhhhcCCCCCCChHHHHH-HHHHHHHhhcCCChhHHHHccc---CChhHHHHH
Q 031378           30 CFFLVVLYIKRRLNC-----LLEIVQQEKFYNAPTQNMTRTAVVK-EIVKFAAEGIGNSYSSALESGF---SDRSTDLLT  100 (160)
Q Consensus        30 ~~a~ra~~aar~~~~-----~l~~~~Q~~f~~~~~~~~t~~~i~~-~la~~A~~~~Gld~~~~f~~~l---~~~~~~~~i  100 (160)
                      ..|||.+.+++..+.     +++.+ ...|+.. ..+.+....+. .|.+.|.+ +|+| .+..+..+   .+++..+.+
T Consensus        90 ~~a~rl~~~a~~~~~~~~~~~~~~l-~~a~f~~-g~~i~~~~~l~~vL~~~a~~-~Gld-~~~~~~~l~~~~~~~~~~~l  165 (209)
T cd03021          90 LTAQRFLTAISEQHPESTLTALEAL-FREFWVR-PWSLTEPITESQSISVAADK-LGGS-AEQAEKLLKAASTPEVKNRL  165 (209)
T ss_pred             HHHHHHHHHHHhhCcchHHHHHHHH-HHHHHHH-hccCCCchhhHHHHHHHHHH-cCCC-cccHHHHHHHccCHHHHHHH
Confidence            389999999987643     22222 2333322 22233223332 34444444 5998 34444444   688889999


Q ss_pred             HHHHHHhhcCCccccceEEEC
Q 031378          101 RVSFKFSATRGVYATPTFFVN  121 (160)
Q Consensus       101 ~~~~k~a~~~GV~GTPTffIN  121 (160)
                      +.+.+.|.+.||.|.|||+||
T Consensus       166 ~~~~~~A~~~Gv~GVP~fvv~  186 (209)
T cd03021         166 KENTDEALKYGAFGLPWIVVT  186 (209)
T ss_pred             HHHHHHHHHcCCCCCCEEEEE
Confidence            999999999999999999996

It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.98  E-value=1.1e-05  Score=65.54  Aligned_cols=45  Identities=20%  Similarity=0.298  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHhhcCCccccceEEE-CCEEecCCCCCCCHHHHHHHHHHH
Q 031378           97 DLLTRVSFKFSATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus        97 ~~~i~~~~k~a~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      +..++.+.++++++||+||||+++ ||+.++|+.+   .++|.++|++.
T Consensus       185 ~~~v~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~---~~~L~~~l~~~  230 (232)
T PRK10877        185 DVDIADHYALGVQFGVQGTPAIVLSNGTLVPGYQG---PKEMKAFLDEH  230 (232)
T ss_pred             cchHHHhHHHHHHcCCccccEEEEcCCeEeeCCCC---HHHHHHHHHHc
Confidence            345777899999999999999999 9999998766   99999988853

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.63  E-value=8.4e-05  Score=61.01  Aligned_cols=48  Identities=17%  Similarity=0.250  Sum_probs=39.5

Q ss_pred             ChhHHHHHHHHHHHhhcCCccccceEEE-C--CE--EecCCCCCCCHHHHHHHHHH
Q 031378           93 DRSTDLLTRVSFKFSATRGVYATPTFFV-N--GF--SLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus        93 ~~~~~~~i~~~~k~a~~~GV~GTPTffI-N--G~--~~~ga~s~~~~e~~~~~Id~  143 (160)
                      +++....+..+.++++++||+||||+++ |  |.  .++|+.+   .+++.+++++
T Consensus       198 ~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~---~~~L~~~l~~  250 (251)
T PRK11657        198 PAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPD---PAQLAEIMGP  250 (251)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCC---HHHHHHHhCC
Confidence            4456778999999999999999999999 5  65  6788766   8998888754

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.33  E-value=0.00022  Score=55.83  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=33.4

Q ss_pred             HHHHHHHHHhhcCCccccceEEE-CCEEecCCCCCCCHHHHHHHH
Q 031378           98 LLTRVSFKFSATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus        98 ~~i~~~~k~a~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~I  141 (160)
                      ..+..+.+.++++||+||||+++ ||..+.|..+   .+++.++|
T Consensus       156 ~~i~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~---~~~l~~~L  197 (197)
T cd03020         156 NPVAANLALGRQLGVNGTPTIVLADGRVVPGAPP---AAQLEALL  197 (197)
T ss_pred             chHHHHHHHHHHcCCCcccEEEECCCeEecCCCC---HHHHHhhC
Confidence            34567788999999999999999 6999988665   77777653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.18  E-value=0.0007  Score=44.83  Aligned_cols=37  Identities=24%  Similarity=0.330  Sum_probs=29.2

Q ss_pred             HhhcCCccccceEEECCE-EecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFVNGF-SLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~-~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+++.||.|+||+++||+ .+.|..   +.+++.+.|++++
T Consensus        45 ~~~~~~v~~vPt~~~~g~~~~~G~~---~~~~l~~~l~~~~   82 (82)
T TIGR00411        45 KAMEYGIMAVPAIVINGDVEFIGAP---TKEELVEAIKKRL   82 (82)
T ss_pred             HHHHcCCccCCEEEECCEEEEecCC---CHHHHHHHHHhhC
Confidence            456799999999999998 444543   4899999988764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=96.89  E-value=0.0017  Score=45.64  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=24.0

Q ss_pred             HHhhcCCccccceEEE---CCE---EecCCCCCCCHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV---NGF---SLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~---~~~ga~s~~~~e~~~~~I  141 (160)
                      +.++++||+||||+++   ||+   .+.|..   +.+++.+++
T Consensus        73 ~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~---~~~~l~~~L  112 (112)
T PF13098_consen   73 ELAQRYGVNGTPTIVFLDKDGKIVYRIPGYL---SPEELLKML  112 (112)
T ss_dssp             HHHHHTT--SSSEEEECTTTSCEEEEEESS-----HHHHHHHH
T ss_pred             HHHHHcCCCccCEEEEEcCCCCEEEEecCCC---CHHHHHhhC
Confidence            5789999999999999   477   445644   488888764

...

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.58  E-value=0.0024  Score=42.56  Aligned_cols=26  Identities=38%  Similarity=0.576  Sum_probs=22.3

Q ss_pred             HHHHHhhcCCccccceEEECCEEecC
Q 031378          102 VSFKFSATRGVYATPTFFVNGFSLAG  127 (160)
Q Consensus       102 ~~~k~a~~~GV~GTPTffING~~~~g  127 (160)
                      .+.+.+++.||.||||+++||....+
T Consensus        71 ~~~~~~~~~g~~g~Pt~v~~~~~~~~   96 (98)
T cd02972          71 ADTALARALGVTGTPTFVVNGEKYSG   96 (98)
T ss_pred             HHHHHHHHcCCCCCCEEEECCEEcCC
Confidence            67888999999999999999965543

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=96.37  E-value=0.0042  Score=41.55  Aligned_cols=38  Identities=18%  Similarity=0.392  Sum_probs=26.1

Q ss_pred             HHHHhhcCCccccceEEECCEEe-cCCCCCCCHHHHHHHHH
Q 031378          103 SFKFSATRGVYATPTFFVNGFSL-AGAGSPLDYNGWRKVID  142 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffING~~~-~ga~s~~~~e~~~~~Id  142 (160)
                      ++....+.||.++||++|||+.. .|.  -.+.++++++|+
T Consensus        38 ~~~~~~~ygv~~vPalvIng~~~~~G~--~p~~~el~~~l~   76 (76)
T PF13192_consen   38 DFEEIEKYGVMSVPALVINGKVVFVGR--VPSKEELKELLE   76 (76)
T ss_dssp             THHHHHHTT-SSSSEEEETTEEEEESS----HHHHHHHHHH
T ss_pred             CHHHHHHcCCCCCCEEEECCEEEEEec--CCCHHHHHHHhC
Confidence            44445889999999999999974 451  334777777763

...

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=96.29  E-value=0.007  Score=45.42  Aligned_cols=47  Identities=15%  Similarity=0.142  Sum_probs=37.8

Q ss_pred             HHHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          103 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      +-..+.+.||.|.||+++  ||+.+....+..+.+++.+.|++.+.+..
T Consensus        80 ~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~  128 (132)
T PRK11509         80 SEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ  128 (132)
T ss_pred             CHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence            355689999999999999  99998544445568999999999987653

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.26  E-value=0.0078  Score=44.25  Aligned_cols=41  Identities=10%  Similarity=0.144  Sum_probs=34.4

Q ss_pred             HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+.|.+.||.|.||+++  ||+.+. ..+..+.+++.++|+.++
T Consensus        77 ~~La~~~~I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          77 AKVAKKLGLDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             HHHHHHcCCccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            45689999999999988  999875 666677999999998764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=95.92  E-value=0.0096  Score=42.42  Aligned_cols=40  Identities=15%  Similarity=0.145  Sum_probs=31.4

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      ..+.++||.++||+++  ||+.+.-..+..+.+++.++|+++
T Consensus        70 ~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~~  111 (111)
T cd02963          70 RLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRKL  111 (111)
T ss_pred             HHHHHcCCccCCEEEEEECCEEEEEecCCCCHHHHHHHHhcC
Confidence            4578899999999997  898875444566789999988753

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=95.85  E-value=0.019  Score=41.31  Aligned_cols=47  Identities=17%  Similarity=0.131  Sum_probs=35.0

Q ss_pred             HHHhhcCCccccceEEE---C-CEEecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378          104 FKFSATRGVYATPTFFV---N-GFSLAGAGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI---N-G~~~~ga~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      ...+.+.||.|+||+++   | |+.+.-..+.++.+++.++|+.++.+..|
T Consensus        74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~~~  124 (125)
T cd02951          74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKAYK  124 (125)
T ss_pred             HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhhhc
Confidence            35578899999999877   4 56553333456689999999999877654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PRK10996 thioredoxin 2; Provisional

Probab=95.71  E-value=0.016  Score=43.04  Aligned_cols=41  Identities=17%  Similarity=0.253  Sum_probs=32.2

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||.|+||+++  ||+.+.-..+..+.+++.++|++++
T Consensus        97 ~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996         97 ELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             HHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence            3578899999999999  9998754344566899999988753

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=95.55  E-value=0.017  Score=39.16  Aligned_cols=40  Identities=20%  Similarity=0.305  Sum_probs=32.0

Q ss_pred             HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHH
Q 031378          104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      ..+++++||.++||+++  ||+......+..+.+++.++|++
T Consensus        61 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   61 KELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             HHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred             chhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence            44688999999999999  88887544446679999998875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=95.51  E-value=0.018  Score=38.52  Aligned_cols=33  Identities=24%  Similarity=0.290  Sum_probs=23.5

Q ss_pred             hhcCCccccceEEECCEEec-CCCCCCCHHHHHHHH
Q 031378          107 SATRGVYATPTFFVNGFSLA-GAGSPLDYNGWRKVI  141 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~-ga~s~~~~e~~~~~I  141 (160)
                      +.+.||.|+||+++||+.+- |.  ..+.+++.+++
T Consensus        42 a~~~~v~~vPti~i~G~~~~~G~--~~~~~~l~~~l   75 (76)
T TIGR00412        42 ILEAGVTATPGVAVDGELVIMGK--IPSKEEIKEIL   75 (76)
T ss_pred             HHHcCCCcCCEEEECCEEEEEec--cCCHHHHHHHh
Confidence            56689999999999997763 21  12346666654

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PRK09381 trxA thioredoxin; Provisional

Probab=95.45  E-value=0.026  Score=39.49  Aligned_cols=40  Identities=23%  Similarity=0.316  Sum_probs=31.6

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .++++||.++||+++  ||+.+....+..+.+++.+.|++.+
T Consensus        67 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         67 TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             HHHhCCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            357789999999988  8988754444566899999998765

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=95.40  E-value=0.024  Score=38.62  Aligned_cols=38  Identities=24%  Similarity=0.403  Sum_probs=28.9

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id  142 (160)
                      ..++++||.|+||+++  ||+.+....+..+.+++.++|+
T Consensus        57 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          57 QIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             HHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHHHHHhC
Confidence            4578899999999998  8887654444556888887764

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=95.27  E-value=0.019  Score=36.43  Aligned_cols=31  Identities=13%  Similarity=0.201  Sum_probs=24.7

Q ss_pred             hhcCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378          107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I  141 (160)
                      .+..|+.++|++++||+.+.|.    +.+++.++|
T Consensus        43 ~~~~~~~~vP~~~~~~~~~~g~----~~~~i~~~i   73 (74)
T TIGR02196        43 LKVLGQRGVPVIVIGHKIIVGF----DPEKLDQLL   73 (74)
T ss_pred             HHHhCCCcccEEEECCEEEeeC----CHHHHHHHh
Confidence            5567999999999999987653    368887776

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=95.17  E-value=0.03  Score=41.89  Aligned_cols=44  Identities=14%  Similarity=0.059  Sum_probs=33.9

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ..++++||.|+||+++   ||+.+....+..+.+++.+.|+.++.+.
T Consensus        67 ~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          67 PEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAGE  113 (142)
T ss_pred             HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence            3467899999999988   6887643344556899999999998543

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=95.05  E-value=0.023  Score=39.69  Aligned_cols=38  Identities=24%  Similarity=0.116  Sum_probs=28.4

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      .+++++|.++|||++  ||+.+.-. .+.+.+.+.+.|+++
T Consensus        63 ~~~~~~v~~~Pt~~~~~~g~~~~~~-~G~~~~~~~~~i~~~  102 (102)
T cd02948          63 TLKRYRGKCEPTFLFYKNGELVAVI-RGANAPLLNKTITEL  102 (102)
T ss_pred             HHHHcCCCcCcEEEEEECCEEEEEE-ecCChHHHHHHHhhC
Confidence            468999999999999  89876322 233578888888753

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=94.80  E-value=0.044  Score=42.52  Aligned_cols=43  Identities=30%  Similarity=0.553  Sum_probs=32.9

Q ss_pred             HhhcCCccccc-eEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATP-TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTP-TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++.+||.|+| ||+|  ||++..-..+..+.++|++.|++++.+.
T Consensus       134 ~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~  179 (185)
T PRK15412        134 LGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY  179 (185)
T ss_pred             HHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence            45688999999 5666  6887654445667899999999998654

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=94.77  E-value=0.084  Score=35.62  Aligned_cols=32  Identities=19%  Similarity=0.363  Sum_probs=25.1

Q ss_pred             hcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ...|++++|++||||+.+-|      ++++.++...-+
T Consensus        52 ~~~~~~~vP~ifi~g~~igg------~~~~~~~~~~~~   83 (85)
T PRK11200         52 VGKPVETVPQIFVDQKHIGG------CTDFEAYVKENL   83 (85)
T ss_pred             HCCCCCcCCEEEECCEEEcC------HHHHHHHHHHhc
Confidence            34588999999999999843      888888776543

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=94.52  E-value=0.045  Score=35.58  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=26.3

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~I  141 (160)
                      ....++||+++||+++  +|+.+....+..+.+++.++|
T Consensus        54 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          54 ELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFL   92 (93)
T ss_pred             hHHHhcCcccccEEEEEECCEEEEEEecCCCHHHHHHHh
Confidence            3467889999999988  887554333455567777665

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR01068 thioredoxin thioredoxin

Probab=94.48  E-value=0.071  Score=35.85  Aligned_cols=39  Identities=21%  Similarity=0.366  Sum_probs=29.3

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      ..+++||.++||+++  ||+......+..+.+++.+.|++.
T Consensus        60 ~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        60 IAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             HHHHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHHHHHHhh
Confidence            467899999999999  887654333455678888888764

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=94.28  E-value=0.05  Score=37.41  Aligned_cols=37  Identities=16%  Similarity=0.222  Sum_probs=28.2

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~I  141 (160)
                      ..+.++||.++||+++  ||+.+....+..+.+++.+++
T Consensus        58 ~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~~~~~l   96 (97)
T cd02949          58 EIAEAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFI   96 (97)
T ss_pred             HHHHHCCCeeccEEEEEECCeEEEEEeCCccHHHHHHhh
Confidence            3467889999999999  888875444556688877765

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=94.23  E-value=0.055  Score=41.41  Aligned_cols=42  Identities=36%  Similarity=0.647  Sum_probs=31.4

Q ss_pred             HHhhcCCccccc-eEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATP-TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTP-TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      +.++.+||.|+| +|+|  ||+...-..+..+.++|.+.|++.+.
T Consensus       128 ~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       128 KLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             chHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence            346678999999 6777  68876533345668999999998874

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=94.01  E-value=0.047  Score=37.79  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             HHhhcCCccccceEEECCEEec
Q 031378          105 KFSATRGVYATPTFFVNGFSLA  126 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~~~  126 (160)
                      ..+.++||.++|||++||+.+.
T Consensus        56 e~a~~~~V~~vPt~vidG~~~~   77 (89)
T cd03026          56 DEVEERGIMSVPAIFLNGELFG   77 (89)
T ss_pred             HHHHHcCCccCCEEEECCEEEE
Confidence            4578999999999999999874

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.01  E-value=0.079  Score=41.19  Aligned_cols=43  Identities=16%  Similarity=0.206  Sum_probs=30.2

Q ss_pred             HHHHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          103 SFKFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ...+|+..+|+|||||+.   +|..+-...++.+-+++..++.=.-
T Consensus       104 ~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa  149 (182)
T COG2143         104 TEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVA  149 (182)
T ss_pred             HHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence            356799999999999999   6665432233445888887776443

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=94.00  E-value=0.048  Score=34.77  Aligned_cols=20  Identities=25%  Similarity=0.459  Sum_probs=17.4

Q ss_pred             HhhcCCccccceEEECCEEe
Q 031378          106 FSATRGVYATPTFFVNGFSL  125 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~~~  125 (160)
                      .+++.||.++||++|||+..
T Consensus        44 l~~~~~i~~vPti~i~~~~~   63 (67)
T cd02973          44 LADEYGVMSVPAIVINGKVE   63 (67)
T ss_pred             HHHHcCCcccCEEEECCEEE
Confidence            46789999999999999865

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.94  E-value=0.088  Score=40.35  Aligned_cols=44  Identities=20%  Similarity=0.258  Sum_probs=37.2

Q ss_pred             HHHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          103 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      .-..+.+.+|+..||+++  ||...+...+..+.+.+.+.|++.+.
T Consensus       104 ~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  104 HPELAEDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             ccchHhhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            345688999999999999  99998766667779999999998764

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=93.81  E-value=0.15  Score=41.36  Aligned_cols=42  Identities=10%  Similarity=0.059  Sum_probs=34.6

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+.+.||.|+||+++  ||+.+.-..+..+.+++.+++.+.+.
T Consensus        97 ~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443         97 NLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             HHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence            4578899999999998  99987644456789999999998874

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=93.79  E-value=0.08  Score=35.81  Aligned_cols=41  Identities=15%  Similarity=0.118  Sum_probs=28.2

Q ss_pred             HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      ...+.++||.++|++++  +|.......+.++.+++.+.|++.
T Consensus        59 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        59 KDLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             HHHHHhCCCCcCCEEEEecCCCcceeecCCCCHHHHHHHHHhc
Confidence            34578899999999977  444211223366799999988764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=93.68  E-value=0.074  Score=38.86  Aligned_cols=37  Identities=16%  Similarity=0.256  Sum_probs=27.6

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCC-CCCHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGS-PLDYNGWRKVID  142 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s-~~~~e~~~~~Id  142 (160)
                      +....+|.|||||++  ||+.+....+ ..+.+++.++++
T Consensus        82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        82 FGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             cCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence            344578999999999  9988764433 566888888764

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=93.50  E-value=0.08  Score=36.09  Aligned_cols=35  Identities=17%  Similarity=0.083  Sum_probs=24.7

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKV  140 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~  140 (160)
                      ..++.||+++||+++  ||+......+..+.+++.++
T Consensus        67 ~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~  103 (104)
T cd02997          67 LKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEF  103 (104)
T ss_pred             HHHhCCCccccEEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence            467889999999988  77765444445556666554

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PHA02278 thioredoxin-like protein

Probab=93.29  E-value=0.1  Score=37.12  Aligned_cols=34  Identities=9%  Similarity=0.050  Sum_probs=24.6

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRK  139 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~  139 (160)
                      .+++++|.|+|||++  ||+.+.-..+..+.+++.+
T Consensus        64 l~~~~~I~~iPT~i~fk~G~~v~~~~G~~~~~~l~~   99 (103)
T PHA02278         64 AVKLFDIMSTPVLIGYKDGQLVKKYEDQVTPMQLQE   99 (103)
T ss_pred             HHHHCCCccccEEEEEECCEEEEEEeCCCCHHHHHh
Confidence            578999999999999  9998742223344666554

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=93.19  E-value=0.098  Score=35.89  Aligned_cols=36  Identities=25%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .+.+++|.++||+++  ||... ...+..+.+++.++|+
T Consensus        63 ~~~~~~i~~~Pt~~~~~~g~~~-~~~G~~~~~~l~~~i~  100 (101)
T cd02994          63 LSGRFFVTALPTIYHAKDGVFR-RYQGPRDKEDLISFIE  100 (101)
T ss_pred             HHHHcCCcccCEEEEeCCCCEE-EecCCCCHHHHHHHHh
Confidence            467889999999998  78752 2334666888888775

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=93.17  E-value=0.089  Score=35.62  Aligned_cols=36  Identities=28%  Similarity=0.273  Sum_probs=24.9

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~I  141 (160)
                      ..++++||+++||+++  ||+.+.- ..+...+++.+.|
T Consensus        59 ~~~~~~~i~~~Pt~~~~~~g~~~~~-~~g~~~~~l~~~~   96 (97)
T cd02984          59 EISEKFEITAVPTFVFFRNGTIVDR-VSGADPKELAKKV   96 (97)
T ss_pred             HHHHhcCCccccEEEEEECCEEEEE-EeCCCHHHHHHhh
Confidence            4578899999999988  8887632 2234456666554

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=92.90  E-value=0.2  Score=35.88  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=29.4

Q ss_pred             HHhhcCCccccceEEE--C----C-EEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--N----G-FSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--N----G-~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+.+.||.++||+++  |    | ..+.|..+   -+++.++|+..+.
T Consensus        66 ~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~---~~el~~~i~~i~~  111 (113)
T cd02975          66 EKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA---GYEFASLIEDIVR  111 (113)
T ss_pred             HHHHHcCCCcCCEEEEEeCCeecceEEEEecCc---hHHHHHHHHHHHh
Confidence            4678899999999999  2    2 23556555   7889999988763

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=92.60  E-value=0.15  Score=33.79  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=25.2

Q ss_pred             HHHhhcCCccccceEEE--CC-EEecCCCCCCCHHHHHHH
Q 031378          104 FKFSATRGVYATPTFFV--NG-FSLAGAGSPLDYNGWRKV  140 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG-~~~~ga~s~~~~e~~~~~  140 (160)
                      -..+++.||.++||+++  +| .......+..+.+++.+.
T Consensus        61 ~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~  100 (101)
T cd02961          61 NDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF  100 (101)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence            45678899999999988  44 444444445567766553

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=92.59  E-value=0.16  Score=34.99  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=25.9

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRK  139 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~  139 (160)
                      ..+++.+|.++||+++  ||+......+..+.+++.+
T Consensus        63 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~   99 (101)
T cd03003          63 MLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVK   99 (101)
T ss_pred             HHHHHcCCCccCEEEEEcCCCCcccCCCCCCHHHHHh
Confidence            3477899999999988  8876655555666776654

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=92.55  E-value=0.16  Score=35.48  Aligned_cols=36  Identities=8%  Similarity=0.211  Sum_probs=24.2

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~I  141 (160)
                      ..+++.||.|+|||++  ||+.+... .+...++++..+
T Consensus        62 ~l~~~~~V~~~Pt~~~~~~G~~v~~~-~G~~~~~l~~~~   99 (103)
T cd02985          62 ELCRREKIIEVPHFLFYKDGEKIHEE-EGIGPDELIGDV   99 (103)
T ss_pred             HHHHHcCCCcCCEEEEEeCCeEEEEE-eCCCHHHHHHHH
Confidence            4578899999999988  89876322 223345555544

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=92.30  E-value=0.13  Score=34.99  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=24.9

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKV  140 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~  140 (160)
                      ..+.+.+|.++||+++  ||+......+..+.+++.++
T Consensus        64 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~  101 (102)
T cd03005          64 ELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEF  101 (102)
T ss_pred             hhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHHHHHhh
Confidence            4467889999999888  77754333345557776654

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=92.25  E-value=0.16  Score=35.03  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=26.0

Q ss_pred             HHhhcCCccccceEEE--CCE-----EecCCCCCCCHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGF-----SLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~-----~~~ga~s~~~~e~~~~~I  141 (160)
                      ..+.++||.|+||+++  +|.     ......+..+.+++.++|
T Consensus        65 ~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          65 PLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             HHHHHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence            4567899999999998  553     222334566688887766

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=92.22  E-value=0.17  Score=35.26  Aligned_cols=36  Identities=11%  Similarity=0.159  Sum_probs=24.7

Q ss_pred             HHhhcCCccccceEEE--CCEEe-cCCCCCCCHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSL-AGAGSPLDYNGWRKV  140 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~-~ga~s~~~~e~~~~~  140 (160)
                      ..+++.||.++||+++  ||+.. ....+..+.+++.++
T Consensus        69 ~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~f  107 (108)
T cd02996          69 DIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEF  107 (108)
T ss_pred             HHHHhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhh
Confidence            3578899999999988  88732 222345557776654

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=92.14  E-value=0.17  Score=36.76  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=23.9

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGW  137 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~  137 (160)
                      ..+.+.||.|.|||++  ||+.+....+..+.+++
T Consensus        74 ~la~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~  108 (111)
T cd02965          74 ALAARFGVLRTPALLFFRDGRYVGVLAGIRDWDEY  108 (111)
T ss_pred             HHHHHcCCCcCCEEEEEECCEEEEEEeCccCHHHH
Confidence            5588899999999999  99998644443334443

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=91.84  E-value=0.32  Score=38.58  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             HHHHhhcCCccccceEEE--CCEEe----cCCCCCCCHHHHHHHHHHHhh
Q 031378          103 SFKFSATRGVYATPTFFV--NGFSL----AGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffI--NG~~~----~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      +.+.+++.||.++|||++  ||...    .|..+   .+++.++|+..+.
T Consensus        66 ~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~---~~~l~~~i~~~~~  112 (215)
T TIGR02187        66 DKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA---GYEFAALIEDIVR  112 (215)
T ss_pred             cHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC---HHHHHHHHHHHHH
Confidence            456789999999999999  66543    35444   7889999988864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=91.67  E-value=0.24  Score=34.31  Aligned_cols=39  Identities=13%  Similarity=0.193  Sum_probs=28.3

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      ..++++||.++||+++  ||.... ..+..+.+++.++++..
T Consensus        63 ~~~~~~~I~~~Pt~~l~~~~~~~~-~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          63 SIASEFGVRGYPTIKLLKGDLAYN-YRGPRTKDDIVEFANRV  103 (104)
T ss_pred             hHHhhcCCccccEEEEEcCCCcee-ecCCCCHHHHHHHHHhh
Confidence            3477899999999988  664432 34466789888888753

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=91.59  E-value=0.19  Score=34.69  Aligned_cols=37  Identities=14%  Similarity=0.206  Sum_probs=26.0

Q ss_pred             HHhhcCCccccceEEE-C---CEEecCCCCCCCHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV-N---GFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       105 k~a~~~GV~GTPTffI-N---G~~~~ga~s~~~~e~~~~~I  141 (160)
                      ..++++||.++||+++ +   |+...-..+..+.+++.++|
T Consensus        63 ~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          63 ALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             HHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence            4567889999999988 3   66543333456688877765

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=91.38  E-value=0.36  Score=34.20  Aligned_cols=43  Identities=14%  Similarity=0.085  Sum_probs=33.9

Q ss_pred             HHHhhcCCccccceEEE----CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          104 FKFSATRGVYATPTFFV----NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI----NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      .+++...+|.|+|++++    ||..+.-..+.++.++|...++....
T Consensus        66 ~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~  112 (114)
T cd02958          66 QRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE  112 (114)
T ss_pred             HHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence            45688899999999988    57776544457779999999988764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=91.21  E-value=0.22  Score=33.80  Aligned_cols=36  Identities=19%  Similarity=0.176  Sum_probs=23.7

Q ss_pred             HHhhcCCccccceEEE--CC-EEecCCCCCCCHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NG-FSLAGAGSPLDYNGWRKV  140 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG-~~~~ga~s~~~~e~~~~~  140 (160)
                      ..++++||+++||+++  +| +......+..+.+++.+.
T Consensus        66 ~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~  104 (105)
T cd02998          66 DLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF  104 (105)
T ss_pred             hhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence            4578899999999988  34 333333345567766654

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=91.14  E-value=0.19  Score=34.61  Aligned_cols=36  Identities=8%  Similarity=0.003  Sum_probs=23.9

Q ss_pred             HHhhcCCccccceEEE--CC-EEecCCCCCCC-HHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NG-FSLAGAGSPLD-YNGWRKV  140 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG-~~~~ga~s~~~-~e~~~~~  140 (160)
                      ..+++.||.++||+++  +| +......+..+ .+++.+.
T Consensus        64 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~  103 (104)
T cd03004          64 SLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEF  103 (104)
T ss_pred             HHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence            3467889999999998  55 54433334444 6666654

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=90.89  E-value=0.37  Score=32.75  Aligned_cols=35  Identities=20%  Similarity=0.104  Sum_probs=23.2

Q ss_pred             HhhcCCccccceEEE--CC-EEecCCCCCCCHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NG-FSLAGAGSPLDYNGWRKV  140 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG-~~~~ga~s~~~~e~~~~~  140 (160)
                      .++++||.|+||+++  +| .......+..+.+++.+.
T Consensus        64 ~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~  101 (103)
T cd03001          64 LAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSA  101 (103)
T ss_pred             HHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHH
Confidence            467889999999987  66 222233345667776654

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>TIGR02180 GRX_euk Glutaredoxin

Probab=90.54  E-value=0.43  Score=31.26  Aligned_cols=30  Identities=20%  Similarity=0.396  Sum_probs=22.6

Q ss_pred             hhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .+..|+.++|++|+||+.+-|      .+++.++..
T Consensus        47 ~~~~g~~~vP~v~i~g~~igg------~~~~~~~~~   76 (84)
T TIGR02180        47 EEITGQRTVPNIFINGKFIGG------CSDLLALYK   76 (84)
T ss_pred             HHHhCCCCCCeEEECCEEEcC------HHHHHHHHH
Confidence            455689999999999998854      566665543

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=90.48  E-value=0.34  Score=31.42  Aligned_cols=27  Identities=22%  Similarity=0.502  Sum_probs=21.7

Q ss_pred             cCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378          109 TRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       109 ~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I  141 (160)
                      ..|...+|.+||||+.+-|      .+++.+++
T Consensus        45 ~~g~~~vP~ifi~g~~igg------~~~l~~~l   71 (72)
T cd03029          45 VTGAMTVPQVFIDGELIGG------SDDLEKYF   71 (72)
T ss_pred             HhCCCCcCeEEECCEEEeC------HHHHHHHh
Confidence            3588999999999998843      78877765

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=90.29  E-value=0.27  Score=34.30  Aligned_cols=35  Identities=11%  Similarity=0.132  Sum_probs=24.0

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKV  140 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~  140 (160)
                      ..+++.||.|+||+++  +|.. ....+..+.+++.++
T Consensus        63 ~l~~~~~V~~~PT~~lf~~g~~-~~~~G~~~~~~l~~f   99 (100)
T cd02999          63 SLLSRYGVVGFPTILLFNSTPR-VRYNGTRTLDSLAAF   99 (100)
T ss_pred             HHHHhcCCeecCEEEEEcCCce-eEecCCCCHHHHHhh
Confidence            4578999999999998  6733 223344557776654

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PHA02125 thioredoxin-like protein

Probab=90.18  E-value=0.38  Score=31.67  Aligned_cols=20  Identities=25%  Similarity=0.419  Sum_probs=16.5

Q ss_pred             HHhhcCCccccceEEECCEEe
Q 031378          105 KFSATRGVYATPTFFVNGFSL  125 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~~  125 (160)
                      ..+++.||.++|||+ +|+.+
T Consensus        37 ~l~~~~~v~~~PT~~-~g~~~   56 (75)
T PHA02125         37 ELTAKHHIRSLPTLV-NTSTL   56 (75)
T ss_pred             HHHHHcCCceeCeEE-CCEEE
Confidence            458889999999987 88754

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=89.93  E-value=0.32  Score=38.54  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=27.4

Q ss_pred             HHhhcCCccccceEEEC--CEEecCCCCCCCHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFVN--GFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus       105 k~a~~~GV~GTPTffIN--G~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      ..++++||.++||++++  |+.+.|..+   .+++.+.|..
T Consensus       177 ~~~~~~~V~~vPtl~i~~~~~~~~G~~~---~~~l~~~l~~  214 (215)
T TIGR02187       177 DLAEKYGVMSVPKIVINKGVEEFVGAYP---EEQFLEYILS  214 (215)
T ss_pred             HHHHHhCCccCCEEEEecCCEEEECCCC---HHHHHHHHHh
Confidence            45788999999999996  443667555   8888887764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=89.73  E-value=0.95  Score=30.70  Aligned_cols=27  Identities=19%  Similarity=0.445  Sum_probs=21.7

Q ss_pred             CccccceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378          111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus       111 GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      ++.+.|++||||+.+-|      .+++.+++.+
T Consensus        54 ~~~tVP~ifi~g~~igG------~~dl~~~~~~   80 (86)
T TIGR02183        54 PVETVPQIFVDEKHVGG------CTDFEQLVKE   80 (86)
T ss_pred             CCCCcCeEEECCEEecC------HHHHHHHHHh
Confidence            67899999999998843      6887777654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=89.01  E-value=0.73  Score=33.70  Aligned_cols=40  Identities=5%  Similarity=0.194  Sum_probs=28.4

Q ss_pred             HHHhhcCCcc--ccceEEE--CCE--EecCCCCC-CCHHHHHHHHHH
Q 031378          104 FKFSATRGVY--ATPTFFV--NGF--SLAGAGSP-LDYNGWRKVIDP  143 (160)
Q Consensus       104 ~k~a~~~GV~--GTPTffI--NG~--~~~ga~s~-~~~e~~~~~Id~  143 (160)
                      ..++.+.||+  |.||+.+  ||.  ......+. .+.+++.+.|.+
T Consensus        68 ~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~  114 (116)
T cd03007          68 MELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKG  114 (116)
T ss_pred             HHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence            5679999999  9999877  774  11123334 779998887764

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.85  E-value=0.69  Score=38.58  Aligned_cols=42  Identities=29%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             HHHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          103 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      -...|..+||+.+|||+.  ||+.++-.+ +.+...|++++.+..
T Consensus        63 c~~taa~~gV~amPTFiff~ng~kid~~q-GAd~~gLe~kv~~~~  106 (288)
T KOG0908|consen   63 CRGTAATNGVNAMPTFIFFRNGVKIDQIQ-GADASGLEEKVAKYA  106 (288)
T ss_pred             hhchhhhcCcccCceEEEEecCeEeeeec-CCCHHHHHHHHHHHh
Confidence            345689999999999987  999986332 344577888887766

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=88.52  E-value=0.87  Score=36.44  Aligned_cols=53  Identities=17%  Similarity=0.145  Sum_probs=35.2

Q ss_pred             cccCChhHHHHHHHHHHHhhcCCccc--cceEEECCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378           89 SGFSDRSTDLLTRVSFKFSATRGVYA--TPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus        89 ~~l~~~~~~~~i~~~~k~a~~~GV~G--TPTffING~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      .-|.+++..++   ...|++.+|.++  ||.++|||.....   ..+.+.+...|+.....
T Consensus        46 D~fa~~~~t~R---Qr~Y~~~~~~~~vYTPQ~vVnG~~~~~---g~~~~~~~~ai~~~~~~  100 (202)
T PF06764_consen   46 DPFASPEFTQR---QRAYARRFGLRSVYTPQVVVNGREHRV---GSDRAAVEAAIQAARAR  100 (202)
T ss_dssp             -TT--HHHHHH---HHHHHHHTT-S---SSEEEETTTEEEE---TT-HHHHHHHHHHHHHT
T ss_pred             CccCChhHHHH---HHHHHHHhCCCCCcCCeEEECCeeeee---ccCHHHHHHHHHHhhcc
Confidence            44555555444   456777776665  9999999998875   44588899999988765

The function of this family is unknown.; PDB: 2AXO_A.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=88.52  E-value=0.69  Score=30.37  Aligned_cols=29  Identities=14%  Similarity=0.316  Sum_probs=21.9

Q ss_pred             hcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      +..|..++|++||||+.+-|      ++++.++.+
T Consensus        43 ~~~g~~~vP~i~i~g~~igg------~~~~~~~~~   71 (79)
T TIGR02181        43 QRSGRRTVPQIFIGDVHVGG------CDDLYALDR   71 (79)
T ss_pred             HHhCCCCcCEEEECCEEEcC------hHHHHHHHH
Confidence            34578999999999998854      666666544

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.36  E-value=0.53  Score=39.93  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=36.4

Q ss_pred             hhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          107 SATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       107 a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      +.++||.+-||++.  +|+++.|-.|....++++++|+..+.+
T Consensus        90 AaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118          90 AAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             HHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence            78899999999877  999998877777799999999998865

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=88.35  E-value=0.96  Score=30.74  Aligned_cols=40  Identities=10%  Similarity=0.132  Sum_probs=29.2

Q ss_pred             HHhhcCCcc--ccceEEE--C--CEEecCCCCCCCHHHHHHHHHHH
Q 031378          105 KFSATRGVY--ATPTFFV--N--GFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       105 k~a~~~GV~--GTPTffI--N--G~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      ..+..+||.  ++|++++  +  |.++.-..+..+.+++.++|+..
T Consensus        57 ~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          57 RHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF  102 (103)
T ss_pred             HHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence            357889999  9999999  5  66664322334789999888764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PTZ00051 thioredoxin; Provisional

Probab=87.83  E-value=0.35  Score=32.72  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=18.9

Q ss_pred             HHHhhcCCccccceEEE--CCEEec
Q 031378          104 FKFSATRGVYATPTFFV--NGFSLA  126 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG~~~~  126 (160)
                      ...++++||.++||+++  ||+.+.
T Consensus        61 ~~~~~~~~v~~~Pt~~~~~~g~~~~   85 (98)
T PTZ00051         61 SEVAEKENITSMPTFKVFKNGSVVD   85 (98)
T ss_pred             HHHHHHCCCceeeEEEEEeCCeEEE
Confidence            34678999999999988  887763

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=87.83  E-value=1.1  Score=27.90  Aligned_cols=15  Identities=33%  Similarity=0.713  Sum_probs=13.8

Q ss_pred             CccccceEEECCEEe
Q 031378          111 GVYATPTFFVNGFSL  125 (160)
Q Consensus       111 GV~GTPTffING~~~  125 (160)
                      |..++|++||||+.+
T Consensus        46 g~~~~P~v~i~g~~I   60 (60)
T PF00462_consen   46 GVRTVPQVFIDGKFI   60 (60)
T ss_dssp             SSSSSSEEEETTEEE
T ss_pred             CCCccCEEEECCEEC
Confidence            999999999999864

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=87.45  E-value=0.61  Score=33.42  Aligned_cols=39  Identities=21%  Similarity=0.137  Sum_probs=28.5

Q ss_pred             HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHH
Q 031378          104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      ...+.+++|.++|||++  ||+.+.- .-+-+.+++++.|+.
T Consensus        64 ~~~~~~~~V~~~PTf~f~k~g~~~~~-~vGa~~~~l~~~i~~  104 (106)
T KOG0907|consen   64 EEVAKEFNVKAMPTFVFYKGGEEVDE-VVGANKAELEKKIAK  104 (106)
T ss_pred             HhHHHhcCceEeeEEEEEECCEEEEE-EecCCHHHHHHHHHh
Confidence            44589999999999999  8888642 223445677777764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=87.23  E-value=0.76  Score=41.62  Aligned_cols=34  Identities=15%  Similarity=0.309  Sum_probs=25.9

Q ss_pred             HHhhcCCccccceEEECCEEe-cCCCCCCCHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFVNGFSL-AGAGSPLDYNGWRKVI  141 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~~-~ga~s~~~~e~~~~~I  141 (160)
                      ..+.++||.+||+++|||+++ .|..   +.+++.++|
T Consensus       520 ~~~~~~~v~~vP~~~i~~~~~~~G~~---~~~~~~~~~  554 (555)
T TIGR03143       520 DLKDEYGIMSVPAIVVDDQQVYFGKK---TIEEMLELI  554 (555)
T ss_pred             HHHHhCCceecCEEEECCEEEEeeCC---CHHHHHHhh
Confidence            356789999999999999654 4533   488877665

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=87.01  E-value=0.89  Score=30.19  Aligned_cols=28  Identities=21%  Similarity=0.446  Sum_probs=22.5

Q ss_pred             hcCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378          108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I  141 (160)
                      ...|...+|.+||||+.+-|      ++++.++|
T Consensus        51 ~~~g~~~vP~i~i~g~~igG------~~~l~~~l   78 (79)
T TIGR02190        51 AVTGATTVPQVFIGGKLIGG------SDELEAYL   78 (79)
T ss_pred             HHHCCCCcCeEEECCEEEcC------HHHHHHHh
Confidence            34688999999999998854      68877765

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=86.66  E-value=0.96  Score=33.77  Aligned_cols=40  Identities=15%  Similarity=0.236  Sum_probs=28.2

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      ..++..||.++|++++   ||+.+.-..+..+.+++.++++++
T Consensus       129 ~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        129 QVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             hHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence            3457789999997665   698774333455588888888754

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=86.26  E-value=0.9  Score=39.06  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=32.7

Q ss_pred             HHhhcCCccccceEEE--CCEE-ecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFS-LAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~-~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      +.++++||.|+||+++  ||.. .....+..+.+++.+.+...+..
T Consensus        66 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~  111 (462)
T TIGR01130        66 DLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGP  111 (462)
T ss_pred             HHHHhCCCccccEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCC
Confidence            4578899999999988  7775 32334467799999999887743

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=86.11  E-value=1  Score=39.22  Aligned_cols=43  Identities=19%  Similarity=0.200  Sum_probs=33.4

Q ss_pred             HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ...+++.||.|+||+++  ||..+ ...+.++.+++.+.++..+.+
T Consensus        96 ~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~  140 (477)
T PTZ00102         96 MELAQEFGVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGP  140 (477)
T ss_pred             HHHHHhcCCCcccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCC
Confidence            34678899999999988  77654 344567799999999988754

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=84.64  E-value=1.2  Score=27.79  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=20.2

Q ss_pred             CCccccceEEECCEEecCCCCCCCHHHHHHH
Q 031378          110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKV  140 (160)
Q Consensus       110 ~GV~GTPTffING~~~~ga~s~~~~e~~~~~  140 (160)
                      .++.++|+++++|+.+.|.    +.+++++.
T Consensus        46 ~~~~~vP~i~~~~~~i~g~----~~~~l~~~   72 (73)
T cd02976          46 NGYRSVPVVVIGDEHLSGF----RPDKLRAL   72 (73)
T ss_pred             cCCcccCEEEECCEEEecC----CHHHHHhh
Confidence            4899999999999988653    34555543

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=84.47  E-value=1.7  Score=28.34  Aligned_cols=29  Identities=17%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             hcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      +..|+.++|++|+||..+-|      ++++.++.+
T Consensus        47 ~~~g~~~~P~v~~~g~~igg------~~~~~~~~~   75 (82)
T cd03419          47 ELTGQRTVPNVFIGGKFIGG------CDDLMALHK   75 (82)
T ss_pred             HHhCCCCCCeEEECCEEEcC------HHHHHHHHH
Confidence            45689999999999998743      666666544

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=84.47  E-value=0.87  Score=32.17  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=19.1

Q ss_pred             HHhhcCCccccceEEE--CCEEec
Q 031378          105 KFSATRGVYATPTFFV--NGFSLA  126 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~  126 (160)
                      ..+.++||.++||+++  ||+.+.
T Consensus        67 ~l~~~~~i~~~Pt~~~f~~G~~v~   90 (113)
T cd02957          67 FLVNYLDIKVLPTLLVYKNGELID   90 (113)
T ss_pred             HHHHhcCCCcCCEEEEEECCEEEE
Confidence            5578999999999998  999875

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=83.21  E-value=2.7  Score=29.96  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=18.1

Q ss_pred             HHhhcCCccccceEEE--CCEEe
Q 031378          105 KFSATRGVYATPTFFV--NGFSL  125 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~  125 (160)
                      ..+.+++|.++||+++  ||+.+
T Consensus        66 ~l~~~~~v~~vPt~l~fk~G~~v   88 (113)
T cd02989          66 FLVEKLNIKVLPTVILFKNGKTV   88 (113)
T ss_pred             HHHHHCCCccCCEEEEEECCEEE
Confidence            3578999999999999  89876

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=83.15  E-value=1.5  Score=28.44  Aligned_cols=26  Identities=15%  Similarity=0.276  Sum_probs=19.9

Q ss_pred             CCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378          110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       110 ~GV~GTPTffING~~~~ga~s~~~~e~~~~~I  141 (160)
                      .|-.+.|++|+||+.+-   +   ++++.++.
T Consensus        47 ~g~~~vP~v~i~~~~iG---g---~~~~~~~~   72 (73)
T cd03027          47 TGSSVVPQIFFNEKLVG---G---LTDLKSLE   72 (73)
T ss_pred             hCCCCcCEEEECCEEEe---C---HHHHHhhc
Confidence            45577899999999884   3   78877753

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=82.31  E-value=3  Score=28.09  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             CccccceEEECCEEecCCCCCCCHHHHHH
Q 031378          111 GVYATPTFFVNGFSLAGAGSPLDYNGWRK  139 (160)
Q Consensus       111 GV~GTPTffING~~~~ga~s~~~~e~~~~  139 (160)
                      |.+.+|.+||||+.+-|   ..+.+++.+
T Consensus        50 g~~tvP~I~i~~~~igg---~~d~~~~~~   75 (80)
T COG0695          50 GQRTVPQIFIGGKHVGG---CDDLDALEA   75 (80)
T ss_pred             CCCCcCEEEECCEEEeC---cccHHHHHh
Confidence            99999999999997743   334555543

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=82.30  E-value=3.2  Score=30.46  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=24.3

Q ss_pred             hcCCccccceEEE---CCEEecCCCCC-----CCHHHHHHHHHHHh
Q 031378          108 ATRGVYATPTFFV---NGFSLAGAGSP-----LDYNGWRKVIDPLL  145 (160)
Q Consensus       108 ~~~GV~GTPTffI---NG~~~~ga~s~-----~~~e~~~~~Id~~l  145 (160)
                      ...|+.|+||+++   +|+++.+.+.-     ++-..|.+++++..
T Consensus        74 ~~~~~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (124)
T cd02955          74 AMTGQGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR  119 (124)
T ss_pred             HhcCCCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence            3669999999999   78887543221     33345666555543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>TIGR02740 TraF-like TraF-like protein

Probab=82.02  E-value=2.2  Score=35.39  Aligned_cols=42  Identities=7%  Similarity=-0.077  Sum_probs=29.5

Q ss_pred             HHhhcCCccccceEEE---CC-EEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV---NG-FSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG-~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+.++||.++||+++   || +...-..+..+.+++.+.|..+..
T Consensus       220 ~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       220 GQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             HHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            3567899999999998   34 333222235568999988887765

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=82.00  E-value=1.9  Score=32.77  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=24.6

Q ss_pred             CccccceEEE---CCEE-ecCCCCCCCHHHHHHHHHHHh
Q 031378          111 GVYATPTFFV---NGFS-LAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       111 GV~GTPTffI---NG~~-~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ||.|+||.++   +|.. ..-..+..+.+++.+.|+++|
T Consensus       115 ~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll  153 (153)
T TIGR02738       115 RPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL  153 (153)
T ss_pred             CCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence            8999999998   5443 322233556999999988764

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=82.00  E-value=1.7  Score=30.54  Aligned_cols=33  Identities=27%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHH
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRK  139 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~  139 (160)
                      .++++||.++|+++|   || ......+..+.+++.+
T Consensus        85 ~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~  120 (123)
T cd03011          85 ISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL  120 (123)
T ss_pred             HHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence            466789999999888   66 3322333445666654

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=81.65  E-value=0.91  Score=33.11  Aligned_cols=22  Identities=18%  Similarity=0.390  Sum_probs=19.2

Q ss_pred             HHhhcCCccccceEEE--CCEEec
Q 031378          105 KFSATRGVYATPTFFV--NGFSLA  126 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~  126 (160)
                      ..+.+.||++.|||++  ||+.+.
T Consensus        59 ~la~~~~V~~iPTf~~fk~G~~v~   82 (114)
T cd02954          59 DFNKMYELYDPPTVMFFFRNKHMK   82 (114)
T ss_pred             HHHHHcCCCCCCEEEEEECCEEEE
Confidence            4578899999999999  998874

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=81.57  E-value=1.2  Score=29.96  Aligned_cols=34  Identities=15%  Similarity=0.014  Sum_probs=21.6

Q ss_pred             hhcCCccccceEEE--CCE--EecCCCCCCCHHHHHHH
Q 031378          107 SATRGVYATPTFFV--NGF--SLAGAGSPLDYNGWRKV  140 (160)
Q Consensus       107 a~~~GV~GTPTffI--NG~--~~~ga~s~~~~e~~~~~  140 (160)
                      +...+|.++||+++  +|.  ......+..+.+++.++
T Consensus        66 ~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~f  103 (104)
T cd02995          66 PSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKF  103 (104)
T ss_pred             hhhccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhh
Confidence            55678899999998  665  12122345557766554

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=81.51  E-value=1.9  Score=39.24  Aligned_cols=40  Identities=8%  Similarity=0.064  Sum_probs=31.1

Q ss_pred             HHhhcCCccccceEE-E--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFF-V--NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       105 k~a~~~GV~GTPTff-I--NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      +.++.+||.|.||++ |  ||+++....+..+.+++.++|+..
T Consensus       130 ~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        130 TLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP  172 (521)
T ss_pred             HHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            457889999999995 4  698875444566799999999843

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=81.16  E-value=3.2  Score=31.41  Aligned_cols=45  Identities=11%  Similarity=0.177  Sum_probs=31.6

Q ss_pred             HHhhcCCccccceEE-E--CCE-EecCCCC--------CCCHHHHHHHHHHHhhhcC
Q 031378          105 KFSATRGVYATPTFF-V--NGF-SLAGAGS--------PLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       105 k~a~~~GV~GTPTff-I--NG~-~~~ga~s--------~~~~e~~~~~Id~~l~~~~  149 (160)
                      ..+...+|.+.||++ +  ||. .+....+        ..+.+++.++++..+.+..
T Consensus        68 dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~  124 (142)
T PLN00410         68 DFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR  124 (142)
T ss_pred             HHHHHcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence            458889999887666 4  888 5543222        3568899999999885443

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=81.13  E-value=2.3  Score=26.21  Aligned_cols=28  Identities=25%  Similarity=0.547  Sum_probs=20.8

Q ss_pred             hhcCCccccceEEECCEEecCCCCCCCHHHHHHH
Q 031378          107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKV  140 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~  140 (160)
                      .+..|....|++++||..+.|      ++++.++
T Consensus        43 ~~~~~~~~~P~~~~~~~~igg------~~~~~~~   70 (72)
T cd02066          43 KELSGWPTVPQIFINGEFIGG------YDDLKAL   70 (72)
T ss_pred             HHHhCCCCcCEEEECCEEEec------HHHHHHh
Confidence            344677999999999999854      5665554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=80.97  E-value=2.7  Score=29.43  Aligned_cols=29  Identities=24%  Similarity=0.243  Sum_probs=22.1

Q ss_pred             hhcCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378          107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I  141 (160)
                      .+..|...+|.+||||+.+-|      ++++.++-
T Consensus        54 ~~~tg~~tvP~Vfi~g~~iGG------~ddl~~l~   82 (99)
T TIGR02189        54 SRLGCSPAVPAVFVGGKLVGG------LENVMALH   82 (99)
T ss_pred             HHhcCCCCcCeEEECCEEEcC------HHHHHHHH
Confidence            455689999999999999854      66666553

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PTZ00056 glutathione peroxidase; Provisional

Probab=80.82  E-value=1.9  Score=33.98  Aligned_cols=41  Identities=29%  Similarity=0.226  Sum_probs=29.5

Q ss_pred             eEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcCC----CCCcccc
Q 031378          117 TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK----KREVPLH  157 (160)
Q Consensus       117 TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~----~~~~~~~  157 (160)
                      ||+|  ||+++.-..+..+.+++.+.|++++.+++-    +|-+.||
T Consensus       148 tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~~~~~~~~~~~~~~  194 (199)
T PTZ00056        148 KFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVKDYQELFKNYDKLH  194 (199)
T ss_pred             EEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence            7888  798764334456689999999999977654    4555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	6e-14
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	6e-07
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	1e-06
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	3e-06
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	6e-06
1z6m_A	175	Conserved hypothetical protein; structural genomic	6e-04
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	7e-04

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV} Length = 182

 Score = 64.7 bits (157), Expect = 6e-14
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 50  QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSAT 109
           + E     P  + T   ++  I +++          AL   F++   +   +   K++  
Sbjct: 98  EFEHHAGGPNLDATPNDIIARIERYSGL--------ALAEAFANPELEHAVKWHTKYARQ 149

Query: 110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI 141
            G++ +PTF +NG    G  S    + W   I
Sbjct: 150 NGIHVSPTFMINGLVQPGMSSGDPVSKWVSDI 181

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A Length = 186

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 51  QEKFYNAPTQNMTRTAVVKEIVKFAAE-GI-GNSYSSALESG-FSDRSTDLLTRVSFKFS 107
           Q++ + A           + + K   +  +   + +  ++     D  +        K +
Sbjct: 83  QKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIA 142

Query: 108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGK 150
               +  TPT F+NG  +       DY  + K++   +  +  
Sbjct: 143 KDNHIKTTPTAFINGEKVEDP---YDYESYEKLLKDKIKLEHH 182

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A Length = 202

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKGKK 151
            + ATPT +VN   +       DY+  ++ I+  L  K + 
Sbjct: 160 NIQATPTIYVNDKVIKNF---ADYDEIKETIEKELKGKLEH 197

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans} Length = 205

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSE 147
            V  TP+F ++G  LAG     D+   R  I   L+E
Sbjct: 165 NVSGTPSFMIDGILLAGT---HDWASLRPQILARLNE 198

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A* Length = 226

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 8/55 (14%)

Query: 111 GVYATPTFFVNGFSLAGAGSP--------LDYNGWRKVIDPLLSEKGKKREVPLH 157
           G+ A P FF+                    +   +  VID L  +   K E   H
Sbjct: 168 GITAVPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKLYGKAIVKLEHHHH 222

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 Length = 175

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 3/57 (5%)

Query: 86  ALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID 142
               G  ++    L       +    +   PT  +  +    +   +     R  I+
Sbjct: 121 EKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIIIGEYIFDES---VTEEELRGYIE 174

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} Length = 175

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 3/35 (8%)

Query: 111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL 145
           G   TP+F V    + G    ++ +  +  +D   
Sbjct: 141 GFNGTPSFVVEDALVPGF---VEQSQLQDAVDRAR 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	99.69
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	99.57
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	99.56
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	99.51
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	99.49
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	99.46
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	99.46
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	99.45
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	99.45
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	99.44
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	99.44
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.43
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	99.43
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	99.4
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	99.39
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	99.36
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	99.36
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	99.35
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	99.32
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	99.32
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	99.28
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	99.25
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	99.13
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.8
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.74
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	98.35
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.97
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.88
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.65
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.38
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.34
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	97.05
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	96.88
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.86
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	96.82
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	96.77
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	96.76
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	96.75
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	96.69
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.65
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	96.64
2l57_A	126	Uncharacterized protein; structural genomics, unkn	96.61
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.61
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	96.61
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	96.61
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	96.61
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.58
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	96.55
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	96.55
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	96.52
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	96.52
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	96.52
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.48
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	96.41
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	96.4
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.39
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	96.39
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	96.38
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.36
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	96.25
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	96.25
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	96.25
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.24
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	96.23
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	96.2
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	96.19
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.18
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	96.18
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	96.14
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	96.13
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.13
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	96.12
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	96.11
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	96.1
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	96.09
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.09
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	96.07
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.07
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	96.05
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	96.05
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.04
2kuc_A	130	Putative disulphide-isomerase; structural genomics	96.03
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	96.0
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	95.99
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	95.97
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	95.94
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	95.93
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	94.92
1mek_A	120	Protein disulfide isomerase; electron transport, r	95.91
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	95.89
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	95.88
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	95.87
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	95.86
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	95.83
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	95.82
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	95.71
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	95.71
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	95.69
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	95.67
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	95.62
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	95.6
3ktb_A	106	Arsenical resistance operon trans-acting represso;	95.55
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	95.5
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	94.49
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	95.44
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	95.41
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	95.35
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	95.35
2qsi_A	137	Putative hydrogenase expression/formation protein;	95.34
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	95.32
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	95.26
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	95.25
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	95.22
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	95.2
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	95.2
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	95.1
3raz_A	151	Thioredoxin-related protein; structural genomics,	95.08
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	95.07
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	95.04
3kgk_A	110	Arsenical resistance operon trans-acting represso;	95.04
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	94.99
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	94.85
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	94.84
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	94.84
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	94.8
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	94.79
4evm_A	138	Thioredoxin family protein; structural genomics, n	94.64
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	94.62
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	94.6
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	94.55
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	94.51
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	94.47
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	94.42
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	94.42
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	94.34
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	94.33
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	94.28
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	94.24
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	94.1
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	94.05
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	94.05
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	94.0
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	93.83
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	93.75
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	93.74
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	93.7
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	93.47
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	93.39
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	93.32
1ttz_A	87	Conserved hypothetical protein; structural genomic	93.3
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	93.27
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	93.26
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	93.23
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	93.19
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	93.05
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	93.03
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	92.91
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	92.84
1kte_A	105	Thioltransferase; redox-active center, electron tr	92.57
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	92.5
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	92.28
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	92.24
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	92.06
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	91.95
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	91.8
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	91.48
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	91.48
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	91.47
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	90.91
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	90.82
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	90.77
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	90.73
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	90.71
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	90.68
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	90.59
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	90.35
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	90.22
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	90.22
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	90.13
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	90.04
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	90.03
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	89.91
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	89.62
2lrt_A	152	Uncharacterized protein; structural genomics, thio	89.56
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	89.47
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	89.39
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	89.32
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	89.03
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	88.61
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	88.51
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	88.09
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	88.04
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	87.61
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	87.12
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	86.88
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	86.63
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	85.94
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	85.46
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	85.09
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	85.04
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	84.44
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	83.67
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	83.51
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	83.12
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	82.94
3ira_A	173	Conserved protein; methanosarcina mazei,structural	82.77
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	81.89
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	81.82
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	81.74
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	81.25
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	81.08
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	80.42

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=99.69  E-value=1.1e-16  Score=123.79  Aligned_cols=115  Identities=18%  Similarity=0.390  Sum_probs=90.8

Q ss_pred             eeeeeccCc---h---hhhHHHHHHHHHhhh--h-----HHHHh--chhhh-hcC----CCCCCChHHHHHHHHHHHHhh
Q 031378           19 KLASYFRDK---F---VCFFLVVLYIKRRLN--C-----LLEIV--QQEKF-YNA----PTQNMTRTAVVKEIVKFAAEG   78 (160)
Q Consensus        19 ~~~~~~~~~---~---~~~a~ra~~aar~~~--~-----~l~~~--~Q~~f-~~~----~~~~~t~~~i~~~la~~A~~~   78 (160)
                      +|.+++|.-   +   +..++|+..++++++  +     +.+.+  +|+.| +..    +..++++.+++..+++.+   
T Consensus        47 ~v~~v~r~~p~~~h~~s~~aaraa~aa~~~~~~~~~f~~~~~aLf~~q~~~~~~~~~~~~~~~~~~~~~l~~~a~~~---  123 (182)
T 3gn3_A           47 NVTVRIRLQSQPWHMFSGVIVRCILAAATLEGGKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYS---  123 (182)
T ss_dssp             TEEEEEEECCCTTSTTHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTGGGGSCBTTTBSGGGGCCHHHHHHHHHHHH---
T ss_pred             CEEEEEEEcCCCCCccHHHHHHHHHHHHHhccChHHHHHHHHHHHhcCcccccccccccccCCCCHHHHHHHHHHHh---
Confidence            556655531   1   247889999998873  2     45544  89998 342    345678888777777664   


Q ss_pred             cCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378           79 IGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus        79 ~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I  141 (160)
                       |+| .+++   ++++++...++.+.++++++||+|||||+|||+++++.+|++++++|.++|
T Consensus       124 -Gld-~~~~---l~~~~~~~~v~~~~~~a~~~GV~gtPtf~ing~~~~~~s~~~~~e~w~~~l  181 (182)
T 3gn3_A          124 -GLA-LAEA---FANPELEHAVKWHTKYARQNGIHVSPTFMINGLVQPGMSSGDPVSKWVSDI  181 (182)
T ss_dssp             -TCC-CHHH---HHCGGGHHHHHHHHHHHHHHTCCSSSEEEETTEECTTCCTTSCHHHHHHHH
T ss_pred             -CCC-HHHH---hcChHHHHHHHHHHHHHHHCCCCccCEEEECCEEccCCCCCCCHHHHHHHh
Confidence             999 4877   778899999999999999999999999999999998888999999999987

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=99.57  E-value=1.3e-14  Score=109.03  Aligned_cols=77  Identities=17%  Similarity=0.227  Sum_probs=66.2

Q ss_pred             HHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378           70 EIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus        70 ~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .+.+.+.+ .|+| .++|++|++++++...++.+.+.++++||+|||||+|||+.+.+..+..++++|.++|+.++.++
T Consensus       108 ~l~~~a~~-~Gld-~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiINGky~v~~~~~~s~e~~~~~i~~Ll~kk  184 (184)
T 4dvc_A          108 ELRQIFLD-EGID-AAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVVNNRYLVQGQSAKSLDEYFDLVNYLLTLK  184 (184)
T ss_dssp             HHHHHHHT-TTCC-HHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEETTTEEECGGGCSSHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHH-hCCC-HHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEECCEEeeCCcCCCCHHHHHHHHHHHHhCc
Confidence            45566666 5999 59999999999999999999999999999999999999986544444566999999999998764

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=99.56  E-value=1.1e-14  Score=114.51  Aligned_cols=124  Identities=22%  Similarity=0.223  Sum_probs=89.8

Q ss_pred             eeeeeccCchh-hhHHHHHHHHHhhhh-----HHHHh--chhhhhcCCCCCCChH-----------HHHH------HHHH
Q 031378           19 KLASYFRDKFV-CFFLVVLYIKRRLNC-----LLEIV--QQEKFYNAPTQNMTRT-----------AVVK------EIVK   73 (160)
Q Consensus        19 ~~~~~~~~~~~-~~a~ra~~aar~~~~-----~l~~~--~Q~~f~~~~~~~~t~~-----------~i~~------~la~   73 (160)
                      +|.+++|.=.. ..+.+|.++++|.++     +.+.+  +|+.|..... ..+..           +.+.      .|.+
T Consensus        50 ~v~~v~r~~pl~~~s~~aa~aa~~~~~~~f~~~~~~Lf~~q~~~~~~~~-~~~~~~~~~w~~~~~~~~l~~ia~~~~L~~  128 (205)
T 3gmf_A           50 KGAIEVRNFVRDPIDMTVALITNCVPPSRFFTLHTAFMRSQAQWIGPLA-NSTEAQRQRWFNGTFATRTRAIASDFRFYD  128 (205)
T ss_dssp             SEEEEEEECCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHTHHHHCHHHH-HCCHHHHHTTSSSCHHHHHHHHHHHTTHHH
T ss_pred             eEEEEEEeCCCCcchHHHHHHHHhcCHhHHHHHHHHHHHcCHHHHhccc-ccchhhhhccccchhHHHHHhccCHHHHHH
Confidence            55555553211 235567788888766     44444  8998854211 11221           1121      2455


Q ss_pred             HHHhhcCCChhHHHHcccCChhHHHHHHHHHHHh-hcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378           74 FAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFS-ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus        74 ~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a-~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .+.+ +|+| .++|+++++++++...++.+.+.+ +++||+|||||+|||+.+.|+.+   +++|.++|++++...
T Consensus       129 ~a~~-~Gld-~~~~~~~l~s~~~~~~v~~~~~~a~~~~GV~GtPtfvvng~~~~G~~~---~e~l~~~i~~~~~~~  199 (205)
T 3gmf_A          129 FMAA-RGMD-RSTLDRCLSNEALAKKLAAETDEAINQYNVSGTPSFMIDGILLAGTHD---WASLRPQILARLNEG  199 (205)
T ss_dssp             HHHT-TTCC-HHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCSSSEEEETTEECTTCCS---HHHHHHHHHHHHTC-
T ss_pred             HHHH-cCCC-HHHHHHHHcCHHHHHHHHHHHHHHHHHcCCccCCEEEECCEEEeCCCC---HHHHHHHHHHHhhcc
Confidence            5555 6999 599999999999999999999999 99999999999999999998666   999999999988654

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=99.51  E-value=7.7e-14  Score=108.92  Aligned_cols=77  Identities=16%  Similarity=0.196  Sum_probs=67.0

Q ss_pred             HHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378           70 EIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus        70 ~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      .+.+.|.+.+|+| .++|.++++++.+...++.+.+.++++||+|||||+|||+.+.|+.+   +++|.++|++++.+|-
T Consensus       120 ~L~~~a~~~~Gld-~~~~~~~l~s~~~~~~v~~~~~~a~~~gV~gtPtfvvnG~~~~G~~~---~e~l~~~i~~~~~~~~  195 (202)
T 3gha_A          120 LLGDLAKSTTKIK-PETLKENLDKETFASQVEKDSDLNQKMNIQATPTIYVNDKVIKNFAD---YDEIKETIEKELKGKL  195 (202)
T ss_dssp             HHHHHHHHHSSSC-HHHHHHHHHHTTTHHHHHHHHHHHHHTTCCSSCEEEETTEECSCTTC---HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhcCCC-HHHHHHHHhChHHHHHHHHHHHHHHHcCCCcCCEEEECCEEecCCCC---HHHHHHHHHHHHHhhh
Confidence            4556665535999 59999999999999999999999999999999999999999988555   9999999999999885


Q ss_pred             C
Q 031378          150 K  150 (160)
Q Consensus       150 ~  150 (160)
                      +
T Consensus       196 ~  196 (202)
T 3gha_A          196 E  196 (202)
T ss_dssp             -
T ss_pred             h
Confidence            5

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=99.49  E-value=2.1e-13  Score=103.73  Aligned_cols=108  Identities=12%  Similarity=0.111  Sum_probs=79.6

Q ss_pred             hhhHHHHHHHHHhhhh-----HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHH---HHccc--CChhH
Q 031378           29 VCFFLVVLYIKRRLNC-----LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSA---LESGF--SDRST   96 (160)
Q Consensus        29 ~~~a~ra~~aar~~~~-----~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~---f~~~l--~~~~~   96 (160)
                      +.++++++.++.+.+|     +.+.+  .|.....   ...+.    +.+.+.|.+ +|++ .++   |.+++  ++.++
T Consensus        61 s~~aa~a~~~a~~~~~~~~~~~~~~lf~~~~~~~~---~~~~~----~~l~~~a~~-~Gld-~~~~~~~~~~~~~~~~~~  131 (186)
T 3bci_A           61 SIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENK---EWLTK----ELLDKHIKQ-LHLD-KETENKIIKDYKTKDSKS  131 (186)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCCTTS---CCCCH----HHHHHHHHT-TCCC-HHHHHHHHHHHHSTTCHH
T ss_pred             hHHHHHHHHHHHHhCHHHHHHHHHHHHhcCcccCC---CCCCH----HHHHHHHHH-cCCC-HHHHHHHHHHHHhcCHHH
Confidence            3589999999988875     44433  4443211   11222    345556655 5999 588   99999  99999


Q ss_pred             HHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378           97 DLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus        97 ~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ...++.+.+.++++||+|||||+|||+.+.|..+   +++|.++|+.++.+.
T Consensus       132 ~~~v~~~~~~a~~~gv~GtPt~vvnG~~~~G~~~---~~~l~~~i~~~~~~~  180 (186)
T 3bci_A          132 WKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYD---YESYEKLLKDKIKLE  180 (186)
T ss_dssp             HHHHHHHHHHHHHTTCCSSSEEEETTEECSCTTC---HHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCCCCCeEEECCEEcCCCCC---HHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999987555   999999999887443

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=99.46  E-value=5.9e-13  Score=103.35  Aligned_cols=114  Identities=13%  Similarity=0.106  Sum_probs=87.1

Q ss_pred             hhHHHHHHHHHhhhhHHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHh
Q 031378           30 CFFLVVLYIKRRLNCLLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFS  107 (160)
Q Consensus        30 ~~a~ra~~aar~~~~~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a  107 (160)
                      .+|+|++.+|+..++..++.  -++.++.. +.+.+..+++   .+.|.+ +|+| .++|.++++++++...++.+.+.+
T Consensus        89 ~~a~r~~~aa~~~g~~~~~~~~l~~a~~~~-~~~~~~~~~l---~~~a~~-~Gld-~~~~~~~~~s~~~~~~v~~~~~~a  162 (208)
T 3kzq_A           89 YQSCRAVIAAGFQDSYEQMLEAIQHAYYLR-AMPPHEEATH---LQLAKE-IGLN-VQQFKNDMDGTLLEGVFQDQLSLA  162 (208)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHTS-CCCTTCHHHH---HHHHHH-TTCC-HHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-CCCCCCHHHH---HHHHHH-cCCC-HHHHHHHHhChHHHHHHHHHHHHH
Confidence            49999999999988722222  34455543 3455554444   444445 5999 599999999999999999999999


Q ss_pred             hcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          108 ATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       108 ~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      +++||+|||||+|  ||+.+.+..+..+.+++.+.|+.++.+.+
T Consensus       163 ~~~gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~~~~~  206 (208)
T 3kzq_A          163 KSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERIIENM  206 (208)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHHHHTC
T ss_pred             HHcCCCcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999  46665544455569999999999997764

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=99.46  E-value=2.4e-13  Score=104.05  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=84.4

Q ss_pred             hhhHHHHHHHHHhhhh--HHHHhchhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHH
Q 031378           29 VCFFLVVLYIKRRLNC--LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKF  106 (160)
Q Consensus        29 ~~~a~ra~~aar~~~~--~l~~~~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~  106 (160)
                      +.++.++..++++++.  +.+.+ .+.++.. ..+....+   .+.+.+.+ +|++ .++|.+++++.++...++.+.+.
T Consensus        71 s~~aa~a~~aa~~~g~~~~~~~l-f~~~~~~-~~~~~~~~---~l~~~a~~-~Gld-~~~~~~~~~s~~~~~~v~~~~~~  143 (195)
T 3hd5_A           71 MKPLQQLYYTLQALERPDLHPKV-FTAIHTE-RKRLFDKK---AMGEWAAS-QGVD-RAKFDSVFDSFSVQTQVQRASQL  143 (195)
T ss_dssp             GHHHHHHHHHHHHTTCTTHHHHH-HHHHHTS-CCCCCSHH---HHHHHHHH-TTCC-HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHH-HHHHHHh-ccCCCCHH---HHHHHHHH-hCCC-HHHHHHHHcCHHHHHHHHHHHHH
Confidence            3578888888887762  33322 1111221 22333333   34555555 5999 59999999999999999999999


Q ss_pred             hhcCCccccceEEECCEEecCCCCCCCH-HHHHHHHHHHhhhcCC
Q 031378          107 SATRGVYATPTFFVNGFSLAGAGSPLDY-NGWRKVIDPLLSEKGK  150 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~ga~s~~~~-e~~~~~Id~~l~~~~~  150 (160)
                      ++++||+|||||+|||+.+.+.....+. ++|.++|+.++.+...
T Consensus       144 a~~~gv~gtPt~ving~~~~~g~~~~~~~e~~~~~i~~L~~~~~~  188 (195)
T 3hd5_A          144 AEAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLIVQSRE  188 (195)
T ss_dssp             HHHTTCCSSSEEEETTTEEECTTTTTGGGTTHHHHHHHHHHHHHC
T ss_pred             HHHhCCCcCceEEECCEEEeCccccCChHHHHHHHHHHHHHHHhc
Confidence            9999999999999999988765555567 9999999999988743

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=99.45  E-value=5e-13  Score=103.85  Aligned_cols=104  Identities=15%  Similarity=0.191  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHHhhhh--HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHH
Q 031378           30 CFFLVVLYIKRRLNC--LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFK  105 (160)
Q Consensus        30 ~~a~ra~~aar~~~~--~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k  105 (160)
                      .+|||++.+++..+|  ..++.  -+..+|.. +.+.+..+++..++   .+ +|+| .++|.++++++++...++.+.+
T Consensus        91 ~~a~r~~~~a~~~g~~~~~~~~~alf~a~~~~-g~~i~~~~~L~~~a---~~-~Gld-~~~~~~~~~s~~~~~~v~~~~~  164 (202)
T 3fz5_A           91 LAATRAFYWIEAQSPDAATAFAQRVFDLYFSD-RLDTASPEAVSRLG---PE-VGLE-PEALLAGIADPALKETVRKIGE  164 (202)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTT-CCCTTCHHHHHTTH---HH-HTCC-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHH---HH-cCCC-HHHHHHHhcCHHHHHHHHHHHH
Confidence            489999999998875  22333  34555554 44555555544444   44 3999 5999999999999999999999


Q ss_pred             HhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .++++||+|||||+|||+.+.|..+   ++.+.+.|.
T Consensus       165 ~a~~~Gv~GvPtfvv~g~~~~G~~~---~~~l~~~l~  198 (202)
T 3fz5_A          165 DAVARGIFGSPFFLVDDEPFWGWDR---MEMMAEWIR  198 (202)
T ss_dssp             HHHHTTCCSSSEEEETTEEEESGGG---HHHHHHHHH
T ss_pred             HHHHCCCCcCCEEEECCEEEecCCC---HHHHHHHHh
Confidence            9999999999999999999999776   888877775

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=99.45  E-value=4.2e-13  Score=107.38  Aligned_cols=110  Identities=12%  Similarity=0.138  Sum_probs=87.3

Q ss_pred             hhHHHHHHHHHhhhhHHHHh--chhhhhcCCCCCCCh-HHHHHHHHHHHHhhcCCChhHHHHcccCC-hhHHHHHHHHHH
Q 031378           30 CFFLVVLYIKRRLNCLLEIV--QQEKFYNAPTQNMTR-TAVVKEIVKFAAEGIGNSYSSALESGFSD-RSTDLLTRVSFK  105 (160)
Q Consensus        30 ~~a~ra~~aar~~~~~l~~~--~Q~~f~~~~~~~~t~-~~i~~~la~~A~~~~Gld~~~~f~~~l~~-~~~~~~i~~~~k  105 (160)
                      .+|||++.+|+..+...++.  -+..||.. +.+.+. .+++..   .|.+ +|+| .++|.+++++ ++....++.+.+
T Consensus       101 ~~a~r~~~~A~~~g~~~~~~~alf~a~~~~-g~~i~d~~~~L~~---~a~~-~Gld-~~~~~~~l~s~~~~~~~v~~~~~  174 (239)
T 3gl5_A          101 FDLHRLLHLAKERGRHEALLDAFYRGNFAD-ERSVFNDDERLVE---LAVG-AGLD-AEEVRAVLADPAAYADEVRADER  174 (239)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHTC-SSCCSSCHHHHHH---HHHH-TTCC-HHHHHHHHHCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcHHHHHHHHHHHHHhc-CCCCCCHHHHHHH---HHHH-cCCC-HHHHHHHHcCcHhHHHHHHHHHH
Confidence            49999999999876522222  34455554 445665 555444   4444 5999 5999999999 999999999999


Q ss_pred             HhhcCCccccceEEECCE-EecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFVNGF-SLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~-~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++++||+|||||+|||+ .+.|+.+   ++.|.+.|++++...
T Consensus       175 ~a~~~Gv~GvPtfvv~g~~~v~Ga~~---~e~~~~~i~~~~~~~  215 (239)
T 3gl5_A          175 EAAQLGATGVPFFVLDRAYGVSGAQP---AEVFTQALTQAWGER  215 (239)
T ss_dssp             HHHHTTCCSSSEEEETTTEEEESSCC---HHHHHHHHHHHHHTC
T ss_pred             HHHHCCCCeeCeEEECCcEeecCCCC---HHHHHHHHHHHHhhc
Confidence            999999999999999997 6888777   999999999999765

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=99.44  E-value=1.7e-13  Score=106.01  Aligned_cols=109  Identities=13%  Similarity=0.116  Sum_probs=84.3

Q ss_pred             hhHHHHHHHHHhhhh---HHHHhchhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHH
Q 031378           30 CFFLVVLYIKRRLNC---LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKF  106 (160)
Q Consensus        30 ~~a~ra~~aar~~~~---~l~~~~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~  106 (160)
                      .+|+|++.+++..+.   +.+.+ ++.+|.. +.+.+..+++..+   |.+ +|+| .++|.++++++++...++.+.+.
T Consensus        87 ~~a~r~~~~a~~~g~~~~~~~~l-f~a~~~~-~~~i~~~~~L~~~---a~~-~Gld-~~~~~~~~~s~~~~~~v~~~~~~  159 (203)
T 2imf_A           87 RRMNIGFYYSGAEAQAAAYVNVV-FNAVWGE-GIAPDLESLPALV---SEK-LGWD-RSAFEHFLSSNAATERYDEQTHA  159 (203)
T ss_dssp             HHHHHHGGGCCSHHHHHHHHHHH-HHHHHHS-CCCTTCTTHHHHH---HHH-HTCC-HHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcChHHHHHHHH-HHHHHcC-CCCCCCHHHHHHH---HHH-cCCC-HHHHHHHhcCHHHHHHHHHHHHH
Confidence            378888888877654   33333 3334443 3455544444444   444 4999 59999999999999999999999


Q ss_pred             hhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ++++||+|||||+|||+.+.|+.+   ++.+.+.|+..+..+
T Consensus       160 a~~~Gv~G~Ptfvi~g~~~~G~~~---~~~l~~~l~~~~~~~  198 (203)
T 2imf_A          160 AIERKVFGVPTMFLGDEMWWGNDR---LFMLESAMGRLCRQN  198 (203)
T ss_dssp             HHHTTCCSSSEEEETTEEEESGGG---HHHHHHHHHHHHHHH
T ss_pred             HHHCCCCcCCEEEECCEEEECCCC---HHHHHHHHhcccccc
Confidence            999999999999999999998777   999999999988665

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=99.44  E-value=2.1e-13  Score=104.09  Aligned_cols=110  Identities=17%  Similarity=0.164  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHhhhh---HHHHhchhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHH
Q 031378           30 CFFLVVLYIKRRLNC---LLEIVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKF  106 (160)
Q Consensus        30 ~~a~ra~~aar~~~~---~l~~~~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~  106 (160)
                      .+++++..++++.+.   +.+.+ ...++.. ..+....+   .+.+.+.+ +|+| .++|.++++++.+...++.+.+.
T Consensus        72 ~~aa~a~~aa~~~g~~~~~~~~l-f~~~~~~-~~~~~~~~---~l~~~a~~-~Gld-~~~~~~~~~~~~~~~~v~~~~~~  144 (192)
T 3h93_A           72 NVHGQMFLTLESMGVEHDVHNAV-FEAIHKE-HKKLATPE---EMADFLAG-KGVD-KEKFLSTYNSFAIKGQMEKAKKL  144 (192)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHH-HHHHHTS-CCCCCSHH---HHHHHHHT-TTCC-HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHH-HHHHHHh-CcCCCCHH---HHHHHHHH-cCCC-HHHHHHHhhCHHHHHHHHHHHHH
Confidence            588899999988776   33333 1222332 22333333   35555555 5999 59999999999999999999999


Q ss_pred             hhcCCccccceEEECCEEec---CCCCCCCHHHHHHHHHHHhhhcC
Q 031378          107 SATRGVYATPTFFVNGFSLA---GAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~---ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      ++++||+|||||+|||+.+.   |+.+   +++|.++|+.++.+.+
T Consensus       145 a~~~gv~gtPt~~vng~~~~~~~G~~~---~e~l~~~i~~l~~k~~  187 (192)
T 3h93_A          145 AMAYQVTGVPTMVVNGKYRFDIGSAGG---PEETLKLADYLIEKER  187 (192)
T ss_dssp             HHHHTCCSSSEEEETTTEEEEHHHHTS---HHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCeEEECCEEEecccccCC---HHHHHHHHHHHHHHHH
Confidence            99999999999999999875   6555   9999999999986643

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.43  E-value=9.9e-13  Score=98.65  Aligned_cols=102  Identities=14%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             hhhHHHHHHHHHhhhh---HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHH
Q 031378           29 VCFFLVVLYIKRRLNC---LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVS  103 (160)
Q Consensus        29 ~~~a~ra~~aar~~~~---~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~  103 (160)
                      +..++++..++.+.+.   +.+.+  .|.        +.+.    +.+.+.+.+ +|++ .++|.++++++++...++.+
T Consensus        68 s~~aa~~~~~a~~~~~~~~~~~~lf~~~~--------~~~~----~~l~~~a~~-~Gld-~~~~~~~~~~~~~~~~v~~~  133 (175)
T 3gyk_A           68 SDFAARAALAARQQGKYEAFHWALMGMSG--------KANE----TGVLRIARE-VGLD-TEQLQRDMEAPEVTAHIAQS  133 (175)
T ss_dssp             HHHHHHHHHHGGGGTCHHHHHHHHHTCSS--------CCSH----HHHHHHHHH-TTCC-HHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHhcCC--------CCCH----HHHHHHHHH-cCCC-HHHHHHHHhChHHHHHHHHH
Confidence            3578888888877754   33333  332        2233    345566655 5999 59999999999999999999


Q ss_pred             HHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          104 FKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      .+.++++||+|||||+|||+.+.|..+   +++|.+.|++++++
T Consensus       134 ~~~a~~~gv~gtPt~~i~g~~~~G~~~---~~~l~~~i~~~l~~  174 (175)
T 3gyk_A          134 MALAQKLGFNGTPSFVVEDALVPGFVE---QSQLQDAVDRARKA  174 (175)
T ss_dssp             HHHHHHHTCCSSSEEEETTEEECSCCC---HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCccCCEEEECCEEeeCCCC---HHHHHHHHHHHHhc
Confidence            999999999999999999999998666   99999999998854

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=99.43  E-value=1.7e-12  Score=100.47  Aligned_cols=109  Identities=17%  Similarity=0.237  Sum_probs=83.9

Q ss_pred             hhHHHHHHHHHhhhh--HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHH
Q 031378           30 CFFLVVLYIKRRLNC--LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFK  105 (160)
Q Consensus        30 ~~a~ra~~aar~~~~--~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k  105 (160)
                      .+|+|++.+++..+|  ..++.  -++.+|.. +.+.+..+++   .+.|.+ +|+| .++|.+++++.++...++.+.+
T Consensus        94 ~~a~r~~~~a~~~~~~~~~~~~~~lf~a~~~~-~~~~~~~~~l---~~~a~~-~Gld-~~~~~~~~~~~~~~~~v~~~~~  167 (216)
T 2in3_A           94 EPACRGVVSVSLIEPEKVFPFFAAIQRAFYVG-QEDVAQLAIL---KKLAVD-LGIP-ESRFTPVFQSDEAKQRTLAGFQ  167 (216)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTT-CCCTTSHHHH---HHHHHH-TTCC-HHHHHHHHHSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHHHhc-CCCCCCHHHH---HHHHHH-cCCC-HHHHHHHhcchHHHHHHHHHHH
Confidence            489999999998844  22322  33444543 3455544444   444444 5999 5999999999999999999999


Q ss_pred             HhhcCCccccceEEE--CCEE---ecCCCCCCCHHHHHHHHHHHhhh
Q 031378          106 FSATRGVYATPTFFV--NGFS---LAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~---~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      .++++||+|||||+|  ||+.   +.|+.+   .++|.++|++++.+
T Consensus       168 ~a~~~gv~g~Pt~~i~~~G~~~~~~~G~~~---~~~l~~~l~~~~~~  211 (216)
T 2in3_A          168 RVAQWGISGFPALVVESGTDRYLITTGYRP---IEALRQLLDTWLQQ  211 (216)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEESSCCC---HHHHHHHHHHHHHH
T ss_pred             HHHHcCCcccceEEEEECCEEEEeccCCCC---HHHHHHHHHHHHHh
Confidence            999999999999999  9995   677666   99999999998865

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=99.40  E-value=1.5e-12  Score=100.51  Aligned_cols=109  Identities=12%  Similarity=0.100  Sum_probs=82.2

Q ss_pred             hhHHHHHHHHHhhhh-H---H-H-HhchhhhhcCCCCCCChHHHHHHHHHHHHhhc-CCChhHHHHcccCChhHHHHHHH
Q 031378           30 CFFLVVLYIKRRLNC-L---L-E-IVQQEKFYNAPTQNMTRTAVVKEIVKFAAEGI-GNSYSSALESGFSDRSTDLLTRV  102 (160)
Q Consensus        30 ~~a~ra~~aar~~~~-~---l-~-~~~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~-Gld~~~~f~~~l~~~~~~~~i~~  102 (160)
                      .++.++..++++++. .   + + +|  +.++.. ..+....   +.+.+.+.+ + |+| .++|.+++++..+...++.
T Consensus        71 ~~aa~a~~aa~~~g~~~~~~~~~~lf--~a~~~~-~~~~~~~---~~l~~~a~~-~~Gld-~~~~~~~~~s~~~~~~v~~  142 (193)
T 3hz8_A           71 LTLARLAAAVDMAAADSKDVANSHIF--DAMVNQ-KIKLQNP---EVLKKWLGE-QTAFD-GKKVLAAYESPESQARADK  142 (193)
T ss_dssp             HHHHHHHHHHHHHTGGGHHHHHHHHH--HHHHTS-CCCTTSH---HHHHHHHHH-CTTTT-HHHHHHHHHSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCchhHHhHHHHHH--HHHHHh-CcCCCCH---HHHHHHHHH-ccCCC-HHHHHHHHcCHHHHHHHHH
Confidence            478889999888875 2   2 2 22  111111 1122222   345566666 6 999 5999999999999999999


Q ss_pred             HHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          103 SFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      +.+.++++||+|||||+|||+.+.|..   ++++|.++|+.++.+.+
T Consensus       143 ~~~~a~~~gv~gtPt~vvng~~~~~~~---~~e~l~~~i~~ll~k~r  186 (193)
T 3hz8_A          143 MQELTETFQIDGVPTVIVGGKYKVEFA---DWESGMNTIDLLADKVR  186 (193)
T ss_dssp             HHHHHHHTTCCSSSEEEETTTEEECCS---SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcCCEEEECCEEEecCC---CHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988743   69999999999987654

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=99.39  E-value=1.5e-12  Score=98.86  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=80.8

Q ss_pred             hhHHHHHHHHHhhhh---HHHH-h-chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHH
Q 031378           30 CFFLVVLYIKRRLNC---LLEI-V-QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSF  104 (160)
Q Consensus        30 ~~a~ra~~aar~~~~---~l~~-~-~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~  104 (160)
                      .+++++..++++.+.   +.+. | .|...... ..+....   +.+.+.+.+ .|++ .++|.+++++..+...++.+.
T Consensus        72 ~~a~~a~~~a~~~~~~~~~~~~lf~~~~~~~~~-~~~~~~~---~~l~~~a~~-~Gld-~~~~~~~~~~~~~~~~v~~~~  145 (193)
T 2rem_A           72 DPFARAYLAADVLGVAKRSHTAMFEAIHEKGSV-PIQNVGP---DELAVFYAG-YGVQ-PDRFVATFNGPEVEKRFQAAR  145 (193)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CSTTCCH---HHHHHHHHT-TTCC-HHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHhccc-CcCCCCH---HHHHHHHHH-cCCC-HHHHHHHHhChHHHHHHHHHH
Confidence            589999999998865   3333 3 33221110 0012222   235555655 5999 599999999999999999999


Q ss_pred             HHhhcCCccccceEEECCEEe-cCCCCCCCHHHHHHHHHHHhhhc
Q 031378          105 KFSATRGVYATPTFFVNGFSL-AGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~~-~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      +.++++||+|||||+|||+.+ .|.    ++++|.++|+.++.+.
T Consensus       146 ~~a~~~gv~gtPt~ving~~~~~g~----~~~~l~~~i~~~~~~~  186 (193)
T 2rem_A          146 AYALKVRPVGTPTIVVNGRYMVTGH----DFEDTLRITDYLVSRE  186 (193)
T ss_dssp             HHHHHHCCSSSSEEEETTTEEECCS----SHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCeEEECCEEEecCC----CHHHHHHHHHHHHHHH
Confidence            999999999999999999976 443    5999999999998654

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=99.36  E-value=3.1e-12  Score=98.97  Aligned_cols=109  Identities=14%  Similarity=0.125  Sum_probs=80.6

Q ss_pred             hhhHHHHHHHHHhhhh---HHH-Hh-c-hhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHH
Q 031378           29 VCFFLVVLYIKRRLNC---LLE-IV-Q-QEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRV  102 (160)
Q Consensus        29 ~~~a~ra~~aar~~~~---~l~-~~-~-Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~  102 (160)
                      +.++.++..++++++.   +.+ +| . |.+..      ....   +.+.+.+.+ +|+| .++|++++++++....++.
T Consensus        71 s~~aa~a~~aA~~~g~~~~~~~~lf~a~~~~~~------~~~~---~~L~~~a~~-~Gld-~~~~~~~~~s~~~~~~v~~  139 (191)
T 3l9s_A           71 GKELTQAWAVAMALGVEDKVTVPLFEAVQKTQT------VQSA---ADIRKVFVD-AGVK-GEDYDAAWNSFVVKSLVAQ  139 (191)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTSCC------CSSH---HHHHHHHHH-TTCC-HHHHHHHHTSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCC------CCCH---HHHHHHHHH-cCCC-HHHHHHHHhCHHHHHHHHH
Confidence            4688899999999876   333 34 2 33221      1222   245566666 5999 5999999999999999999


Q ss_pred             HHHHhhcCCccccceEEECCEEecCCCCCCC------HHHHHHHHHHHhhhc
Q 031378          103 SFKFSATRGVYATPTFFVNGFSLAGAGSPLD------YNGWRKVIDPLLSEK  148 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffING~~~~ga~s~~~------~e~~~~~Id~~l~~~  148 (160)
                      +.+.++++||+|||||+|||+.+....+.-+      .+++.++|+-++.++
T Consensus       140 ~~~~a~~~gv~gtPtfvvnG~~~v~~~~~~~~~~~~~~~~~~~~i~~L~~k~  191 (191)
T 3l9s_A          140 QEKAAADLQLQGVPAMFVNGKYQINPQGMDTSSMDVFVQQYADTVKYLVDKK  191 (191)
T ss_dssp             HHHHHHHTTCCSSSEEEETTTEEECGGGSCCSSHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhCCcccCEEEECCEEEECccccCCccchhhHHHHHHHHHHHHcCC
Confidence            9999999999999999999997654333233      368999999888654

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=99.36  E-value=3.6e-12  Score=98.01  Aligned_cols=112  Identities=10%  Similarity=0.121  Sum_probs=78.9

Q ss_pred             hhhHHHHHHHHHhhhh---HH-HHh-chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHH
Q 031378           29 VCFFLVVLYIKRRLNC---LL-EIV-QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVS  103 (160)
Q Consensus        29 ~~~a~ra~~aar~~~~---~l-~~~-~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~  103 (160)
                      +.+++|+..+++..+.   +. .+| .+.  ... . ..++    +.+.+.+.+..|+| .++|.++++++++...++.+
T Consensus        64 s~~aa~a~~aA~~~g~~~~~~~~lf~a~~--~~~-~-~~~~----~~l~~~a~~~~Gld-~~~~~~~~~s~~~~~~v~~~  134 (189)
T 3l9v_A           64 GHELTRAWALAMVMKETDVIEKAFFTAGM--VEK-R-LHSP----DDVRRVFMSATGIS-RGEYDRSIKSPAVNDMVALQ  134 (189)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TTC-C-CCSH----HHHHHHHHHHHCCC-HHHHHHHTTSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCcHHHHHHHHHHHHh--hhc-c-CCCH----HHHHHHHHHccCCC-HHHHHHHHhhHHHHHHHHHH
Confidence            4588899888888864   33 333 211  111 1 1122    34556665523999 59999999999999999999


Q ss_pred             HHHhhcCCccccceEEECCEEecCCC--CCCCH----HHHHHHHHHHhhhcC
Q 031378          104 FKFSATRGVYATPTFFVNGFSLAGAG--SPLDY----NGWRKVIDPLLSEKG  149 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffING~~~~ga~--s~~~~----e~~~~~Id~~l~~~~  149 (160)
                      .+.++++||+|||||+|||+......  ++.+.    +++.++|+.++.++.
T Consensus       135 ~~~a~~~gv~GtPt~~vng~~~v~~~~~~~~~~~~~~~~~~~~i~~Li~k~~  186 (189)
T 3l9v_A          135 ERLFKEYGVRGTPSVYVRGRYHINNAAFGAFSVENFRSRYAAVVRKLLAGNP  186 (189)
T ss_dssp             HHHHHHTTCCSSSEEEETTTEEECGGGCCCSSHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHhCCCccCEEEECCEEEECccccccccccchHHHHHHHHHHHHhCCC
Confidence            99999999999999999998654322  22222    889999999998763

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=99.35  E-value=1.5e-12  Score=103.60  Aligned_cols=109  Identities=14%  Similarity=0.142  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhhhh------HHH-Hh-chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHH
Q 031378           32 FLVVLYIKRRLNC------LLE-IV-QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVS  103 (160)
Q Consensus        32 a~ra~~aar~~~~------~l~-~~-~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~  103 (160)
                      +.+|..++.|.+.      +.+ +| .|..|....   ....   +.|.+.|.+ +|+| .++|.+++++.+....++.+
T Consensus        88 s~~Aa~aa~aa~~~~~f~~~~~aLF~~q~~~~~~~---~~~~---~~L~~iA~~-~Gld-~~~~~~~l~s~~~~~~v~~~  159 (226)
T 3f4s_A           88 GLKAAMLSHCYEKQEDYFNFNKAVFNSIDSWNYYN---LSDL---TLLQRIAAL-SNLK-QDAFNQCINDKKIMDKIVND  159 (226)
T ss_dssp             HHHHHHHGGGCCSHHHHHHHHHHHHHTGGGSCSSS---TTCC---HHHHHHHHH-TTCC-HHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhChHHHHHHHHHHHHhCHhhcccc---cCcH---HHHHHHHHH-cCCC-HHHHHHHHhCHHHHHHHHHH
Confidence            4445555555322      344 44 787774421   1112   345566655 5999 59999999999999999999


Q ss_pred             HHHhhc-CCccccceEEE---CCEEecCCCC-----CCCHHHHHHHHHHHhhhc
Q 031378          104 FKFSAT-RGVYATPTFFV---NGFSLAGAGS-----PLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       104 ~k~a~~-~GV~GTPTffI---NG~~~~ga~s-----~~~~e~~~~~Id~~l~~~  148 (160)
                      .+.|++ +||+|||||+|   ||+.+.|+.+     ..++++|.++|++++++.
T Consensus       160 ~~~a~~~~GV~GtPtfvv~~~nG~~~~Ga~~~~~~G~~~~e~l~~~I~~~l~~~  213 (226)
T 3f4s_A          160 KSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKLYGKA  213 (226)
T ss_dssp             HHHHHHHHCCCSSCEEEEEECCTTCCCCGGGGEEESCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcCCEEEEEcCCCEEeeCCCCcccccccCHHHHHHHHHHHHhcC
Confidence            999999 99999999999   9998876321     344999999999999765

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=99.32  E-value=7.1e-12  Score=95.45  Aligned_cols=108  Identities=13%  Similarity=0.063  Sum_probs=80.5

Q ss_pred             hhhHHHHHHHHHhhhh---HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhc-CCChhHHHHcccCChhHHHHHHH
Q 031378           29 VCFFLVVLYIKRRLNC---LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGI-GNSYSSALESGFSDRSTDLLTRV  102 (160)
Q Consensus        29 ~~~a~ra~~aar~~~~---~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~-Gld~~~~f~~~l~~~~~~~~i~~  102 (160)
                      +.+++++..+++..+.   +.+.+  .|..  .  +.+....   +.+.+.+.+ . |++ .++|.+++++.++...++.
T Consensus        68 s~~aa~a~~aa~~~~~~~~~~~~lf~~~~~--~--~~~~~~~---~~l~~~a~~-~~Gld-~~~~~~~~~~~~~~~~v~~  138 (195)
T 2znm_A           68 MLGLARMAAAVNLSGLKYQANPAVFKAVYE--Q--KIRLENR---SVAGKWALS-QKGFD-GKKLMRAYDSPEAAAAALK  138 (195)
T ss_dssp             GHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C--SSCTTSH---HHHHHHHHT-CSSSC-HHHHHHHHTSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--h--CCCCCCH---HHHHHHHHH-cCCCC-HHHHHHHhcCHHHHHHHHH
Confidence            3588999999887765   33333  3221  1  1122222   235555555 7 999 5999999999999999999


Q ss_pred             HHHHhhcCCccccceEEECCEE-ecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          103 SFKFSATRGVYATPTFFVNGFS-LAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffING~~-~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      +.+.++++||+|||||+|||+. +.|+   .+.++|.+.|+.++.+.
T Consensus       139 ~~~~a~~~gv~gtPt~ving~~~~~g~---~~~~~l~~~i~~~l~~~  182 (195)
T 2znm_A          139 MQKLTEQYRIDSTPTVIVGGKYRVIFN---NGFDGGVHTIKELVAKV  182 (195)
T ss_dssp             HHHHHHHTTCCSSSEEEETTTEEECCC---SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCeEEECCEEEEcCC---CCHHHHHHHHHHHHHHH
Confidence            9999999999999999999985 6664   44999999999988553

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=99.32  E-value=3.3e-12  Score=96.87  Aligned_cols=112  Identities=13%  Similarity=0.064  Sum_probs=77.8

Q ss_pred             hhhHHHHHHHHHhhhh---H---------HHHh--chhhhhcCCCCCCChHHHHHHHHHH-HHhhcCCChhHHHHcccCC
Q 031378           29 VCFFLVVLYIKRRLNC---L---------LEIV--QQEKFYNAPTQNMTRTAVVKEIVKF-AAEGIGNSYSSALESGFSD   93 (160)
Q Consensus        29 ~~~a~ra~~aar~~~~---~---------l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~-A~~~~Gld~~~~f~~~l~~   93 (160)
                      ...+.++..++++++.   +         .++.  -++.++.. ..+.+..+.+..+.+. +.+ +|+| .++|.+++++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~~~l~~~~~~~a~~-~Gld-~~~~~~~~~~  141 (195)
T 3c7m_A           65 GKQASEVFAVLINKDKAAGISLFDANSQFKKAKFAYYAAYHDK-KERWSDGKDPAAFIKTGLDA-AGMS-QADFEAALKE  141 (195)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCTTSTTCHHHHHHHHHHHHHHTS-CCCTTTTTCHHHHHHHHHHH-HTCC-HHHHHHHHTS
T ss_pred             cHHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHhHHHH-cCCC-HHHHHHHHcC
Confidence            3566666666776653   1         1111  22333332 2334333344445333 444 5999 5999999999


Q ss_pred             hhHHHHHHHHHHHhhcCCccccceEEECCEEe-c--CCCCCCCHHHHHHHHHHHhh
Q 031378           94 RSTDLLTRVSFKFSATRGVYATPTFFVNGFSL-A--GAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus        94 ~~~~~~i~~~~k~a~~~GV~GTPTffING~~~-~--ga~s~~~~e~~~~~Id~~l~  146 (160)
                      +++...++.+.+.++++||+|||||+|||+.. .  |+.+   +++|.++|+.+++
T Consensus       142 ~~~~~~v~~~~~~a~~~gv~gtPt~~ing~~~~~~~g~~~---~~~l~~~i~~~l~  194 (195)
T 3c7m_A          142 PAVQETLEKWKASYDVAKIQGVPAYVVNGKYLIYTKSIKS---IDAMADLIRELAS  194 (195)
T ss_dssp             HHHHHHHHHGGGHHHHHHHHCSSEEEETTTEEECGGGCCC---HHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHcCCCccCEEEECCEEEeccCCCCC---HHHHHHHHHHHHh
Confidence            99999999999999999999999999999863 3  4444   9999999999875

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=99.28  E-value=2.1e-11  Score=95.91  Aligned_cols=108  Identities=12%  Similarity=0.110  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHhhhh--HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCCh--hHHHHcccCChhHHHHHHHH
Q 031378           30 CFFLVVLYIKRRLNC--LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSY--SSALESGFSDRSTDLLTRVS  103 (160)
Q Consensus        30 ~~a~ra~~aar~~~~--~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~--~~~f~~~l~~~~~~~~i~~~  103 (160)
                      .+|+|++.+++..++  +.++.  -+..+|.. +.+.+..+++   .+.|.+ +|++.  .++|.++++++++...++.+
T Consensus        97 ~~a~r~~~aa~~~g~~~~~~~~~alf~a~~~~-~~~i~~~~~L---~~~a~~-~Gl~~~d~~~~~~~~~s~~~~~~v~~~  171 (226)
T 1r4w_A           97 VNAMRFLTAVSMEQPEMLEKVSRELWMRIWSR-DEDITESQNI---LSAAEK-AGMATAQAQHLLNKISTELVKSKLRET  171 (226)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTS-CCCCSSHHHH---HHHHHH-TTCCHHHHHHHHTTTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhChHHHHHHHHHHHHHHhcC-CCCCCCHHHH---HHHHHH-cCCCchhHHHHHHHcCCHHHHHHHHHH
Confidence            489999999998875  22333  33445543 3455555444   444444 49962  46889999999999999999


Q ss_pred             HHHhhcCCccccceEEEC----CEEecCCCCCCCHHHHHHHHHHHh
Q 031378          104 FKFSATRGVYATPTFFVN----GFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffIN----G~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+.++++||+|||||+||    |+.+.|+.+   ++.+.+.|....
T Consensus       172 ~~~a~~~gv~G~Ptfvv~~~g~~~~~~G~~~---~~~l~~~l~~~~  214 (226)
T 1r4w_A          172 TGAACKYGAFGLPTTVAHVDGKTYMLFGSDR---MELLAYLLGEKW  214 (226)
T ss_dssp             HHHHHHTTCCSSCEEEEEETTEEEEEESTTC---HHHHHHHHTCCC
T ss_pred             HHHHHHCCCCCCCEEEEeCCCCcCceeCCCc---HHHHHHHhcCcc
Confidence            999999999999999999    999998766   888888887543

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=99.25  E-value=1.1e-11  Score=95.11  Aligned_cols=114  Identities=18%  Similarity=0.139  Sum_probs=80.2

Q ss_pred             eeccCchhhhHHHHHHHHHhh-hh-----HHH-Hh-chhhhhcCCCCCCChHHHHHHHHHHHHhhcCC-ChhHHHHcccC
Q 031378           22 SYFRDKFVCFFLVVLYIKRRL-NC-----LLE-IV-QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGN-SYSSALESGFS   92 (160)
Q Consensus        22 ~~~~~~~~~~a~ra~~aar~~-~~-----~l~-~~-~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gl-d~~~~f~~~l~   92 (160)
                      +.++.+ ..++.|+..+++.. +.     +.+ +| .+.....     .....-.+.|.+.+.+ +|+ | .++|+++++
T Consensus        60 ~~~~~~-~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~~~-----~~~~~~~~~L~~~a~~-~Gl~d-~~~~~~~~~  131 (185)
T 3feu_A           60 ITFNQS-AHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMGEG-----TTLTEQQEAYSKAFTS-RGLVS-PYDFNEEQR  131 (185)
T ss_dssp             CCSSSH-HHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCCTT-----SCHHHHHHHHHHHHHT-TTCCC-GGGCCHHHH
T ss_pred             ccCCcc-chHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhcc-----CCCCCCHHHHHHHHHH-cCCCC-HHHHHHHHH
Confidence            334443 36888899988764 42     333 33 2221100     0111123457777766 598 9 599999888


Q ss_pred             ChhHHHHHHHHHHHhhcCCccccceEEECCEEe---cCCCCCCCHHHHHHHHHHHhhh
Q 031378           93 DRSTDLLTRVSFKFSATRGVYATPTFFVNGFSL---AGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus        93 ~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~---~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      + .....++.+.+.++++||+|||||+|||+..   +|+.+   ++++.++|+.++.+
T Consensus       132 ~-~~~~~v~~~~~~a~~~gv~GtPtfvvng~~~v~~~Ga~~---~e~~~~~i~~ll~k  185 (185)
T 3feu_A          132 D-TLIKKVDNAKMLSEKSGISSVPTFVVNGKYNVLIGGHDD---PKQIADTIRYLLEK  185 (185)
T ss_dssp             H-HHHHHHHHHHHHHHHHTCCSSSEEEETTTEEECGGGCSS---HHHHHHHHHHHHTC
T ss_pred             H-HHHHHHHHHHHHHHHcCCCccCEEEECCEEEEecCCCCC---HHHHHHHHHHHHhC
Confidence            7 7778999999999999999999999999964   57666   99999999998753

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=99.13  E-value=5.3e-10  Score=88.91  Aligned_cols=107  Identities=10%  Similarity=0.096  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHhhhh--HHHHh--chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChh---HHHHcccCChhHHHHHHHH
Q 031378           31 FFLVVLYIKRRLNC--LLEIV--QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYS---SALESGFSDRSTDLLTRVS  103 (160)
Q Consensus        31 ~a~ra~~aar~~~~--~l~~~--~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~---~~f~~~l~~~~~~~~i~~~  103 (160)
                      +|+|++.+++..++  ..++.  -+..||.. +.+.+..+++..++   .+ +|+| .   +++.+.++++++.+.++.+
T Consensus        98 ~a~r~~~aa~~~~~~~~~~~~~al~~A~~~~-g~di~d~~~L~~~a---~~-~GLd-~~~~~~~l~~~~s~~~~~~l~~~  171 (234)
T 3rpp_A           98 SAMRFLTAVNLEHPEMLEKASRELWMRVWSR-NEDITEPQSILAAA---EK-AGMS-AEQAQGLLEKIATPKVKNQLKET  171 (234)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHTS-CCCCSSHHHHHHHH---HH-TTCC-HHHHHHHHTTTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHcC-CCCCCCHHHHHHHH---HH-cCCC-HHHHHHHHHHccCHHHHHHHHHH
Confidence            89999999987754  33333  45666665 45666665554444   44 4999 5   5666777999999999999


Q ss_pred             HHHhhcCCccccceEEEC--C--EEecCCCCCCCHHHHHHHHHHHhh
Q 031378          104 FKFSATRGVYATPTFFVN--G--FSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffIN--G--~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      .+.+++.||.|||||+||  |  ..+.|...   ++.+.+.|.....
T Consensus       172 ~~~a~~~Gv~GvPtfvv~~~g~~~~f~G~dr---l~~l~~~L~~~~~  215 (234)
T 3rpp_A          172 TEAACRYGAFGLPITVAHVDGQTHMLFGSDR---MELLAHLLGEKWM  215 (234)
T ss_dssp             HHHHHHTTCSSSCEEEEEETTEEEEEESSSC---HHHHHHHHTCCCC
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCcCceeCccC---HHHHHHHhccccC
Confidence            999999999999999995  7  57888666   8887777655443

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.80  E-value=5e-09  Score=78.34  Aligned_cols=60  Identities=13%  Similarity=0.228  Sum_probs=45.6

Q ss_pred             HHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378           70 EIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus        70 ~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .+.+.+++.+|++. +      +   ....++.+.+.++++||+|||||+|||+.+.|+.+   +++|.++|+
T Consensus       115 ~l~~~a~~~~Gld~-~------~---~~~~~~~~~~~a~~~gv~gtPt~vvng~~~~G~~~---~~~l~~~i~  174 (175)
T 1z6m_A          115 EVATYAEKNLGLKE-Q------K---DATLVSAVIAEANAAHIQFVPTIIIGEYIFDESVT---EEELRGYIE  174 (175)
T ss_dssp             HHHHHHHHTSCCCC-C------C---CHHHHHHHHHHHHHHTCCSSCEEEETTEEECTTCC---HHHHHHHHT
T ss_pred             HHHHHHHHhcCCCc-c------c---CHHHHHHHHHHHHHcCCCCcCeEEECCEEccCCCC---HHHHHHHhc
Confidence            45566554469984 3      1   22345566788999999999999999999988665   999999886

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.74  E-value=3.3e-08  Score=76.78  Aligned_cols=55  Identities=18%  Similarity=0.188  Sum_probs=47.3

Q ss_pred             HHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecC
Q 031378           71 IVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAG  127 (160)
Q Consensus        71 la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~g  127 (160)
                      |.+.+.+ +|+| .++|++++++.+....++.+.+.++.+||+|||||+|||+...+
T Consensus         9 L~~~a~~-~Gld-~~~~~~~l~s~~~~~~v~~~~~~a~~~gi~gvP~fvingk~~~~   63 (197)
T 1un2_A            9 IRDVFIN-AGIK-GEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLN   63 (197)
T ss_dssp             HHHHHHH-HTCC-HHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEEC
T ss_pred             HHHHHHH-cCCC-HHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEEcceEecC
Confidence            4444545 4999 59999999999999999998889999999999999999997653

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=98.35  E-value=2.5e-07  Score=68.87  Aligned_cols=50  Identities=20%  Similarity=0.216  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhcCCccccceEEE-CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378           96 TDLLTRVSFKFSATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus        96 ~~~~i~~~~k~a~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .+..++.+.+.++++||+|||||+| ||+.+.|+.+   .++|.++|+..+...
T Consensus        91 ~~~~v~~~~~la~~~gI~gtPt~vi~nG~~i~G~~~---~~~l~~~i~~~~~~~  141 (147)
T 3gv1_A           91 CDNPVAETTSLGEQFGFNGTPTLVFPNGRTQSGYSP---MPQLEEIIRKNQQEG  141 (147)
T ss_dssp             CSCSHHHHHHHHHHTTCCSSCEEECTTSCEEESCCC---TTHHHHHHHHTSCC-
T ss_pred             HHHHHHHHHHHHHHhCCCccCEEEEECCEEeeCCCC---HHHHHHHHHHHHHhc
Confidence            3456778889999999999999999 9999999766   999999999887543

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.97  E-value=3.8e-06  Score=65.30  Aligned_cols=44  Identities=14%  Similarity=0.240  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhhcCCccccceEEE-CCEEecCCCCCCCHHHHHHHHHHH
Q 031378           98 LLTRVSFKFSATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus        98 ~~i~~~~k~a~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      ..+..+.+.++++||+|||||++ ||+.+.|+.+   .+++.++|++.
T Consensus       165 ~~v~~~~~l~~~~gV~gTPt~vi~nG~~~~G~~~---~~~l~~~l~~~  209 (211)
T 1t3b_A          165 NIVKKHYELGIQFGVRGTPSIVTSTGELIGGYLK---PADLLRALEET  209 (211)
T ss_dssp             SHHHHHHHHHHHHTCCSSCEEECTTSCCCCSCCC---HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCcCCEEEEeCCEEecCCCC---HHHHHHHHHhc
Confidence            45667788999999999999999 9998887655   99999988753

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.88  E-value=1e-05  Score=62.93  Aligned_cols=46  Identities=17%  Similarity=0.230  Sum_probs=38.4

Q ss_pred             HHHHHHHHhhcCCccccceEEE-CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378           99 LTRVSFKFSATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus        99 ~i~~~~k~a~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      .+..+.+.++++||+||||+++ ||..+.|..+   .++|.++|+..++.
T Consensus       166 ~v~~~~~l~~~~gV~gtPt~v~~dG~~~~G~~~---~~~l~~~l~~~~~~  212 (216)
T 1eej_A          166 DIADHYALGVQLGVSGTPAVVLSNGTLVPGYQP---PKEMKEFLDEHQKM  212 (216)
T ss_dssp             CHHHHHHHHHHHTCCSSSEEECTTSCEEESCCC---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCccCEEEEcCCeEecCCCC---HHHHHHHHHHhhhh
Confidence            3555677899999999999999 8999988665   99999999987643

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.65  E-value=2.9e-05  Score=61.44  Aligned_cols=51  Identities=12%  Similarity=0.094  Sum_probs=39.1

Q ss_pred             ChhHHHHHHHHHHHhhcCCccccceEEEC---CE--EecCCCCCCCHHHHHHHHHHHhh
Q 031378           93 DRSTDLLTRVSFKFSATRGVYATPTFFVN---GF--SLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus        93 ~~~~~~~i~~~~k~a~~~GV~GTPTffIN---G~--~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      +++....+..+.+.++++||+|||||+++   |+  .+.|+.+   .++|.++|++.+.
T Consensus       178 ~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~~~~~G~~~---~~~L~~~l~~~~~  233 (241)
T 1v58_A          178 STEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPD---QKTLNIIMGNKLQ  233 (241)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCC---HHHHHHHTTC---
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCC---HHHHHHHHHHHHH
Confidence            44566678888899999999999999996   54  4677555   9999998887664

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.38  E-value=0.0001  Score=47.44  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=31.2

Q ss_pred             HHhhcCCccccceEEECCEE-ecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFVNGFS-LAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~-~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.|+||+++||+. +.|.   .+.+++.+.|++.+
T Consensus        46 ~~~~~~~v~~~Pt~~~~G~~~~~G~---~~~~~l~~~l~~~l   84 (85)
T 1nho_A           46 EKAIEYGLMAVPAIAINGVVRFVGA---PSREELFEAINDEM   84 (85)
T ss_dssp             GGGGGTCSSCSSEEEETTTEEEECS---SCCHHHHHHHHHHC
T ss_pred             HHHHhCCceeeCEEEECCEEEEccC---CCHHHHHHHHHHHh
Confidence            45789999999999999996 5564   34899999998765

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.34  E-value=0.00015  Score=46.59  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=30.6

Q ss_pred             HHhhcCCccccceEEECCEE-ecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFVNGFS-LAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~-~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.|+||+++||+. +.|   ..+.+++.+.|++.+
T Consensus        47 ~~~~~~~v~~~Pt~~~~G~~~~~G---~~~~~~l~~~l~~~l   85 (85)
T 1fo5_A           47 QKAMEYGIMAVPTIVINGDVEFIG---APTKEALVEAIKKRL   85 (85)
T ss_dssp             CTTTSTTTCCSSEEEETTEEECCS---SSSSHHHHHHHHHHC
T ss_pred             HHHHHCCCcccCEEEECCEEeeec---CCCHHHHHHHHHHhC
Confidence            35788999999999999997 445   345899999998764

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=97.05  E-value=0.00061  Score=47.20  Aligned_cols=35  Identities=20%  Similarity=0.348  Sum_probs=29.2

Q ss_pred             HHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      ..+++.||.|+||++|||+.+.|..+   .+++.+++.
T Consensus        57 ~l~~~~~V~~~PT~~i~G~~~~G~~~---~~~l~~~~~   91 (106)
T 3kp8_A           57 QECTEAGITSYPTWIINGRTYTGVRS---LEALAVASG   91 (106)
T ss_dssp             HHHHHTTCCSSSEEEETTEEEESCCC---HHHHHHHHT
T ss_pred             HHHHHcCCeEeCEEEECCEEecCCCC---HHHHHHHhC
Confidence            34678999999999999999988555   888888765

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=96.88  E-value=0.00093  Score=43.90  Aligned_cols=42  Identities=21%  Similarity=0.249  Sum_probs=32.8

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+++.||.++||+++  ||+.+....+..+.+++.+.|+..+.
T Consensus        60 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           60 DIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             HHHHHTTCCSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             HHHHhCCccccCEEEEEECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            3567899999999999  99986422335569999999998874

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.86  E-value=0.00085  Score=44.91  Aligned_cols=40  Identities=23%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+++.||.|+||+++  ||+.+....+..+.+++.++|++.+
T Consensus        66 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           66 TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHcCCcccCEEEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            467889999999999  9998532223556999999998876

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=96.82  E-value=0.001  Score=44.77  Aligned_cols=43  Identities=12%  Similarity=0.099  Sum_probs=33.1

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..+++.||.++||+++  ||+.+....+..+.+++.++|++.+..
T Consensus        70 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l~~  114 (115)
T 1thx_A           70 TTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLNN  114 (115)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             HHHHHcCCCceeEEEEEcCCEEEEEecCCCCHHHHHHHHHHHhcC
Confidence            3567899999999999  999764223345699999999988754

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=96.77  E-value=0.0009  Score=42.29  Aligned_cols=35  Identities=17%  Similarity=0.170  Sum_probs=26.2

Q ss_pred             HHhhcCCccccceEEECCEEecCCCCCC-CHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFVNGFSLAGAGSPL-DYNGWRKVI  141 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~~~ga~s~~-~~e~~~~~I  141 (160)
                      +.+++.||.|+||+++||+.+..  +.. +.+++.++|
T Consensus        41 ~~~~~~~v~~~Pt~~~~G~~~~~--G~~~~~~~l~~~l   76 (77)
T 1ilo_A           41 DQILEAGLTALPGLAVDGELKIM--GRVASKEEIKKIL   76 (77)
T ss_dssp             HHHHHHTCSSSSCEEETTEEEEC--SSCCCHHHHHHHC
T ss_pred             HHHHHCCCCcCCEEEECCEEEEc--CCCCCHHHHHHHh
Confidence            45678899999999999998642  233 578877654

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=96.76  E-value=0.00092  Score=44.32  Aligned_cols=41  Identities=15%  Similarity=0.179  Sum_probs=31.3

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||.|+||+++  ||+.+....+..+.+++.+.|++.+
T Consensus        63 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           63 GIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             HHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Confidence            3567899999999999  9987542233455899999998764

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=96.75  E-value=0.00099  Score=44.96  Aligned_cols=42  Identities=17%  Similarity=0.154  Sum_probs=32.0

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..++++||.|+||+++  ||+.+....+..+.+++.+.|++.+.
T Consensus        68 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           68 GTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             HHHHhCCCCcccEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            3567899999999998  99885322234558999999988764

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=96.69  E-value=0.0016  Score=43.63  Aligned_cols=42  Identities=10%  Similarity=0.150  Sum_probs=33.0

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..++++||.++||+++  ||+.+....+..+.+++.+.|++.+.
T Consensus        67 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           67 TLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             HHHHHTTCCSSCEEEEEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             hHHHhcCCCcCCEEEEEECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            4577899999999988  99876433345569999999998764

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.65  E-value=0.00089  Score=44.74  Aligned_cols=41  Identities=15%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.|+||+++  ||+.+....+..+.+++.+.|++++
T Consensus        64 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           64 NVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             HHHHHHTCCSSCEEEEESSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             HHHHHCCCCcCCEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            3467789999999998  8887432223455899999998875

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.64  E-value=0.0016  Score=43.33  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=31.8

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.|+||+++  ||+.+....+..+.+++.+.|++.+
T Consensus        66 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           66 KIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             HHHHhcCcccCCEEEEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence            3467889999999777  9987643334556999999998875

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=96.61  E-value=0.0021  Score=44.47  Aligned_cols=44  Identities=11%  Similarity=0.123  Sum_probs=34.1

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ..++++||.|+||+++   ||+.+....+..+.+++.++|+..+...
T Consensus        73 ~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A           73 DLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKE  119 (126)
T ss_dssp             HHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCCCC
T ss_pred             HHHHHcCCcceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhccc
Confidence            4577899999999999   8987532223556999999999988655

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.61  E-value=0.0023  Score=45.68  Aligned_cols=44  Identities=18%  Similarity=0.244  Sum_probs=35.6

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ..++++||.|+||+++  ||+.+....+..+.+++.++|+..+.+.
T Consensus       100 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~  145 (148)
T 3p2a_A          100 ALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSRD  145 (148)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHHHSC
T ss_pred             HHHHHCCCCccCEEEEEECCeEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            4577899999999988  9987653344666999999999998765

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=96.61  E-value=0.0018  Score=44.70  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=31.9

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||.++||+++  ||+.+....+..+.+++.++|++++
T Consensus        76 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           76 DLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            4577899999999999  9987532223456899999998876

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=96.61  E-value=0.0024  Score=46.47  Aligned_cols=45  Identities=9%  Similarity=0.073  Sum_probs=31.7

Q ss_pred             HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      -..+++.||.|+||+++  ||+.+.-..+..+.+++.+.|++.+...
T Consensus        81 ~~la~~~~V~~iPT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~~~  127 (142)
T 2es7_A           81 EAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVDTP  127 (142)
T ss_dssp             HHHHHTTTCCSSSEEEEESCC----CEESCCCHHHHHHHHHHHHC--
T ss_pred             HHHHHhcCCCcCCeEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            34678999999999999  9987653334556899999999998654

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=96.61  E-value=0.0015  Score=43.44  Aligned_cols=40  Identities=13%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      ..+++.||.++||+++  ||+.+....+..+.+++.++|++.
T Consensus        65 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           65 ETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             HHHHhcCCCccCEEEEEeCCEEEEEecCCCCHHHHHHHHHhc
Confidence            3567899999999999  999864222345589999988765

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.58  E-value=0.0014  Score=44.09  Aligned_cols=41  Identities=17%  Similarity=0.311  Sum_probs=31.2

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..++++||.|+||+++  ||+.+....+. +.+++.++|++.+.
T Consensus        69 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           69 AVAEAAGITAMPTFHVYKDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             HHHHHHTCCBSSEEEEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             HHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence            3467789999999998  99875422223 68999999998764

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=96.55  E-value=0.002  Score=45.57  Aligned_cols=43  Identities=21%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..++++||.++||+++  ||+.+....+..+.+++.++|+..+.+
T Consensus        95 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~  139 (140)
T 1v98_A           95 GLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLEG  139 (140)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             HHHHHCCCCccCEEEEEeCCcEEEEEeCCCCHHHHHHHHHHHHcc
Confidence            3567889999999999  999853222345599999999998864

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=96.55  E-value=0.00092  Score=44.52  Aligned_cols=41  Identities=12%  Similarity=0.168  Sum_probs=30.5

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.|+||+++  ||+.+....+..+.+++.+.|++++
T Consensus        62 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           62 ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             HHHHHcCCccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHh
Confidence            3567899999999999  9987532223455888888887654

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=96.52  E-value=0.0014  Score=43.46  Aligned_cols=43  Identities=16%  Similarity=0.194  Sum_probs=31.8

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..++++||.++||+++  ||+.+....+..+.+++.+.|+..+..
T Consensus        63 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           63 KTAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHTTC--
T ss_pred             hHHHhCCCCcCCEEEEEeCCcEeeeEeCCCCHHHHHHHHHHHhhh
Confidence            3577899999999999  999753222345589999999887643

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=96.52  E-value=0.0014  Score=43.39  Aligned_cols=39  Identities=21%  Similarity=0.212  Sum_probs=30.3

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      .++++||.|+||+++  ||+.+....+..+.+++.+.|++.
T Consensus        65 ~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           65 TAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             HHHHTTCCSBSEEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             HHHhCCCcccCEEEEEeCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            467899999999988  998764333455689999988765

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=96.52  E-value=0.0024  Score=45.20  Aligned_cols=49  Identities=14%  Similarity=0.093  Sum_probs=34.7

Q ss_pred             HHHHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378          102 VSFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       102 ~~~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      .....++++||.|+||+++  ||+.+....+..+.+.+.++|+.++.+..+
T Consensus        80 ~~~~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~~~~  130 (135)
T 3emx_A           80 AARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGEGH  130 (135)
T ss_dssp             HHHHHHHHHTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC-----
T ss_pred             hhHHHHHHcCCceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCCCcc
Confidence            3455688899999999999  898764333455599999999999877644

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.48  E-value=0.0023  Score=44.99  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..+++.||.++||+++  ||+.+....+ .+.+++.++|+..+.+
T Consensus        81 ~l~~~~~v~~~Pt~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l~~  124 (125)
T 1r26_A           81 EIVSKCRVLQLPTFIIARSGKMLGHVIG-ANPGMLRQKLRDIIKD  124 (125)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCCcccEEEEEeCCeEEEEEeC-CCHHHHHHHHHHHhcC
Confidence            3567899999999999  9997642222 4579999999988764

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=96.41  E-value=0.0021  Score=42.53  Aligned_cols=40  Identities=18%  Similarity=0.305  Sum_probs=29.9

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.|+||+++  ||+.+....+ .+.+++.++|++.+
T Consensus        65 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           65 DIAMEYNISSMPTFVFLKNGVKVEEFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEES-CCHHHHHHHHHHTC
T ss_pred             HHHHHcCCCcccEEEEEcCCcEEEEEcC-CCHHHHHHHHHHhC
Confidence            3567899999999998  9987643223 45788888887653

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=96.40  E-value=0.0022  Score=45.64  Aligned_cols=44  Identities=18%  Similarity=0.173  Sum_probs=34.4

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ..++++||.|+||+++  ||+.+....+..+.+++.+.|++.+...
T Consensus        69 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~  114 (140)
T 3hz4_A           69 WTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHG  114 (140)
T ss_dssp             HHHHHHTCCEESEEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHCCCCcCCEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhccc
Confidence            3466789999999999  9988653334566999999999998543

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.39  E-value=0.0026  Score=42.08  Aligned_cols=40  Identities=18%  Similarity=0.285  Sum_probs=31.0

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.|+||+++  ||+.+....+. +.+++.+.|++.|
T Consensus        64 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           64 DVASESEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             HHHHHTTCCBSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             HHHHHcCCCcCcEEEEEECCeEEEEEeCC-CHHHHHHHHHHhC
Confidence            3567889999999999  89886433334 6899999998764

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=96.39  E-value=0.0021  Score=43.78  Aligned_cols=43  Identities=19%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .+++.||.|+||+++  ||+.+....+..+.+++.++++..+...
T Consensus        63 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  107 (112)
T 2voc_A           63 TAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHLLEH  107 (112)
T ss_dssp             HHHHTTCCSBSEEEEEETTEEEEEEESCCCHHHHHHHHHTTSCSC
T ss_pred             HHHHcCCCcccEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHHHhh
Confidence            467889999999999  9998542333556999999998776554

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=96.38  E-value=0.0027  Score=43.45  Aligned_cols=42  Identities=14%  Similarity=0.107  Sum_probs=31.9

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..++++||.|+||+++  ||+.+....+.. .+++.++|++.+.+
T Consensus        78 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l~~  121 (122)
T 2vlu_A           78 PIAEQFSVEAMPTFLFMKEGDVKDRVVGAI-KEELTAKVGLHAAA  121 (122)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESSC-HHHHHHHHHHHHSC
T ss_pred             HHHHHcCCCcccEEEEEeCCEEEEEEeCcC-HHHHHHHHHHHhcc
Confidence            3567899999999999  998754222344 88899999888753

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.36  E-value=0.0023  Score=45.12  Aligned_cols=41  Identities=22%  Similarity=0.299  Sum_probs=32.2

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||.|+||+++  ||+.+....+..+.+++.++|++.+
T Consensus        85 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           85 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             TTSGGGTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCccCEEEEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            3578899999999999  9997532233556999999998876

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=96.25  E-value=0.0035  Score=41.29  Aligned_cols=39  Identities=23%  Similarity=0.234  Sum_probs=29.7

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+++.||.++||+++  ||+.+....+ .+.+++.++|++.+
T Consensus        64 ~~~~~~v~~~Pt~~~~~~g~~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           64 AAAKYSVTAMPTFVFIKDGKEVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             HHHHcCCccccEEEEEeCCcEEEEEeC-CCHHHHHHHHHhhC
Confidence            467889999999998  8988642222 46888999888753

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=96.25  E-value=0.0012  Score=45.07  Aligned_cols=42  Identities=10%  Similarity=0.143  Sum_probs=31.4

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..++++||.++||+++  ||+.+....+..+.+++.++|++.+.
T Consensus        75 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           75 ETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred             HHHHhcCCCcCCEEEEEECCEEEEEecCCCCHHHHHHHHHHHHh
Confidence            3567899999999999  99885322335558899988887654

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=96.25  E-value=0.0031  Score=44.70  Aligned_cols=49  Identities=12%  Similarity=0.080  Sum_probs=32.5

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCCc
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKREV  154 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~~  154 (160)
                      .++.+||.++||++|   ||+.+....+..+.+++.+.|+.++.+...+.+.
T Consensus        95 ~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~~~~~~  146 (151)
T 2f9s_A           95 VLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGETSGLEH  146 (151)
T ss_dssp             HHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC-------
T ss_pred             HHHhcCCCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhhccccc
Confidence            356789999999655   7887653333556999999999999766554333

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.24  E-value=0.0024  Score=43.38  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=30.3

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.++||+++  ||+.+....+. +.+++.++|++++
T Consensus        70 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           70 EVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred             HHHHHcCCCcccEEEEEECCcEEEEEeCC-CHHHHHHHHHHhh
Confidence            4567899999999999  99885422223 6899999888654

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=96.23  E-value=0.0035  Score=42.76  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=29.9

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.|+||+++  ||+.+....+ .+.+++.+.|++.+
T Consensus        76 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           76 ETARKYNISAMPTFIAIKNGEKVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             HHHHHcCCCccceEEEEeCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence            3567899999999999  9988642222 45788888888753

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=96.20  E-value=0.0038  Score=44.57  Aligned_cols=43  Identities=16%  Similarity=0.189  Sum_probs=34.3

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .+.+.+|.|||||++  ||+.+.-..+..+.++|.+.++..+.+-
T Consensus        68 la~~~~V~g~PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l~~~  112 (116)
T 3dml_A           68 LELARPVTFTPTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQA  112 (116)
T ss_dssp             CBCSSCCCSSSEEEEEETTEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCEEEEEECCEEEeeecCCCCHHHHHHHHHHHHhhc
Confidence            467889999999999  9988754444555999999999987654

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=96.19  E-value=0.0039  Score=42.87  Aligned_cols=38  Identities=18%  Similarity=0.409  Sum_probs=29.2

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      ..+++.||.|+|||++  ||+.+.... +.+.+++.++|++
T Consensus        64 ~l~~~~~V~~~PT~~~~~~G~~v~~~~-G~~~~~l~~~i~k  103 (105)
T 3zzx_A           64 DIAQDNQIACMPTFLFMKNGQKLDSLS-GANYDKLLELVEK  103 (105)
T ss_dssp             HHHHHTTCCBSSEEEEEETTEEEEEEE-SCCHHHHHHHHHH
T ss_pred             HHHHHcCCCeecEEEEEECCEEEEEEe-CcCHHHHHHHHHh
Confidence            3578899999999988  999875322 2467888888875

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.18  E-value=0.004  Score=45.43  Aligned_cols=43  Identities=16%  Similarity=0.220  Sum_probs=33.1

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..++++||.++||+++  ||+.+....+..+.+++.++|++.+.+
T Consensus       109 ~l~~~~~i~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          109 AVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             HHHHHcCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHHhcc
Confidence            3578899999999998  999853222345699999999998864

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=96.18  E-value=0.0072  Score=42.63  Aligned_cols=46  Identities=15%  Similarity=0.212  Sum_probs=36.9

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      ..++.+||.++|+++|   ||+.+....+..+.+++.++|+..+...++
T Consensus        99 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~  147 (152)
T 2lja_A           99 TFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLEGH  147 (152)
T ss_dssp             HHHHHTTCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCCSS
T ss_pred             hHHHHcCcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhccccc
Confidence            3456789999999988   798876555567789999999999887754

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=96.14  E-value=0.0049  Score=45.46  Aligned_cols=46  Identities=13%  Similarity=0.129  Sum_probs=35.3

Q ss_pred             HHHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          103 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .-..|.+.||.|.||+++  ||+.+.-..+..+.+++.+.|++.+...
T Consensus        80 ~~~lA~~ygV~sIPTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l~~~  127 (140)
T 2qgv_A           80 SEAIGDRFGAFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQ  127 (140)
T ss_dssp             HHHHHHHHTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC--
T ss_pred             CHHHHHHcCCccCCEEEEEECCEEEEEEecCCCHHHHHHHHHHHhcCC
Confidence            456789999999999999  9998753333444899999999988544

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=96.13  E-value=0.0063  Score=40.51  Aligned_cols=39  Identities=13%  Similarity=0.233  Sum_probs=30.8

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      .++++||.++||+++  ||+.+....+..+.+++.++|++.
T Consensus        70 l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           70 ICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             HHHhcCCCcccEEEEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            577899999999998  998765444566799999888753

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.13  E-value=0.0039  Score=43.55  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=30.6

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||.|+||+++  ||+.+....+ .+.+++.+.|++.+
T Consensus        82 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           82 SVASDWAIQAMPTFMFLKEGKILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred             HHHHHcCCCccCEEEEEECCEEEEEEeC-CCHHHHHHHHHHhc
Confidence            4577899999999999  9998642222 35889999988765

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.12  E-value=0.0038  Score=44.16  Aligned_cols=48  Identities=17%  Similarity=0.144  Sum_probs=35.9

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhcCCCCC
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEKGKKRE  153 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~~  153 (160)
                      .++.+||.++|++++   ||+.+....+..+.+++.+.|+.++.+...++.
T Consensus        98 ~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~~~~  148 (153)
T 2l5o_A           98 VGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDAEGH  148 (153)
T ss_dssp             HHHHHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSSCCT
T ss_pred             HHHHcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhhccc
Confidence            356679999999987   788743222355699999999999987765443

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=96.11  E-value=0.0049  Score=41.61  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=31.8

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..++++||.|+||+++  ||+.+....+ .+.+++.+.|++.+..
T Consensus        72 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           72 DVAEAYNVEAMPTFLFIKDGEKVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             HHHHHTTCCSBSEEEEEETTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             HHHHHcCCCcCcEEEEEeCCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence            3567899999999999  9998642222 4589999999988754

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.10  E-value=0.01  Score=41.50  Aligned_cols=44  Identities=9%  Similarity=0.046  Sum_probs=35.0

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      ..++++||.++||+++  ||+.. ...+..+.+++.++|+..+....
T Consensus        82 ~~~~~~~v~~~Pt~~~~~~G~~~-~~~g~~~~~~l~~~l~~~~~~~~  127 (140)
T 2dj1_A           82 MLASKFDVSGYPTIKILKKGQAV-DYDGSRTQEEIVAKVREVSQPDW  127 (140)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEE-ECCSCCCHHHHHHHHHHHHSSSC
T ss_pred             HHHHHCCCCccCeEEEEECCcEE-EcCCCCCHHHHHHHHHHhcCCCC
Confidence            4577899999999999  99844 33456779999999999986553

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=96.09  E-value=0.0024  Score=42.83  Aligned_cols=41  Identities=15%  Similarity=0.306  Sum_probs=25.0

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.|+||+++  ||+.+....+..+.+++.+.|++.+
T Consensus        62 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           62 EIAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             --------CCCCEEEEEETTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             HHHHhcCCCCCCEEEEEeCCeEEEEEeCCcCHHHHHHHHHHhh
Confidence            4567889999999988  9988742223455999999988654

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.09  E-value=0.0073  Score=40.62  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=31.3

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..+++.||.|+||+++  ||+.+....+ ...+++.+.|++.+..
T Consensus        67 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~~~~  110 (112)
T 3d6i_A           67 EISELFEISAVPYFIIIHKGTILKELSG-ADPKEYVSLLEDCKNS  110 (112)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEECS-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccEEEEEECCEEEEEecC-CCHHHHHHHHHHHHhh
Confidence            4577899999999988  9998642222 2456799999888754

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.07  E-value=0.0077  Score=41.57  Aligned_cols=44  Identities=16%  Similarity=0.119  Sum_probs=34.2

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ..++++||.|+||+++  +|+.+....+..+.+++.++|+..+...
T Consensus        74 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (133)
T 1x5d_A           74 VLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDN  119 (133)
T ss_dssp             HHHHHHTCCSSSEEEEEETTEEEEEECSCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCeeCeEEEEeCCCceEEecCCCCHHHHHHHHHHHhhcc
Confidence            3567789999999998  7876543334567999999999998764

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.07  E-value=0.0037  Score=43.02  Aligned_cols=40  Identities=18%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||.|+||+++  ||+.+....+. +.+++.+.|++++
T Consensus        75 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           75 DVASECEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             HHHHHTTCCSSSEEEEESSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             HHHHHcCCccccEEEEEeCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence            4578889999999999  88776433334 6899999998764

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=96.05  E-value=0.0019  Score=45.23  Aligned_cols=41  Identities=22%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.|+||+++  ||+.+....+..+.+++.+.|++.+
T Consensus        80 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           80 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TTGGGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            3578999999999998  9987532233455899999988654

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=96.05  E-value=0.0049  Score=42.94  Aligned_cols=43  Identities=14%  Similarity=0.148  Sum_probs=33.4

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++++||.++||+++   ||+.+....+..+.+++.+.|+.++.+.
T Consensus       102 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~  147 (148)
T 2b5x_A          102 LTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAET  147 (148)
T ss_dssp             HHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTTC
T ss_pred             HHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhcc
Confidence            467789999999988   8987652223456899999999998754

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.04  E-value=0.0038  Score=43.20  Aligned_cols=39  Identities=23%  Similarity=0.303  Sum_probs=29.8

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+++.||.++||+++  ||+.+....+. +.+++.++|++.+
T Consensus        80 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           80 IAQEVGIRAMPTFVFFKNGQKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             HHHHHTCCSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred             HHHHcCCCcccEEEEEECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence            467789999999998  89875322223 6899999998875

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=96.03  E-value=0.0057  Score=42.28  Aligned_cols=45  Identities=20%  Similarity=0.182  Sum_probs=34.3

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      ..+++.||.|+||+++   ||+.+....+..+.+++.+.|+..+.+.+
T Consensus        77 ~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~~  124 (130)
T 2kuc_A           77 ELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESEG  124 (130)
T ss_dssp             HHHHHTTCCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCCC
T ss_pred             HHHHHcCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            4578899999999998   78775322234558999999999887663

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=96.00  E-value=0.003  Score=42.95  Aligned_cols=41  Identities=10%  Similarity=0.106  Sum_probs=30.4

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      .+++.||.|+||+++  ||+.+....+..+.+++.+.|+....
T Consensus        64 l~~~~~v~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           64 LMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             HHHHTTCCSSCEEEEEESSSEEEEEESCCCHHHHHHHHHTC--
T ss_pred             HHHHcCCcccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHHhh
Confidence            567889999999999  99987622234558999888876654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=95.99  E-value=0.0087  Score=43.36  Aligned_cols=44  Identities=16%  Similarity=0.111  Sum_probs=34.2

Q ss_pred             HHHHhhcCCccccceEEE---CCEEecCCCCCC--CHHHHHHHHHHHhhh
Q 031378          103 SFKFSATRGVYATPTFFV---NGFSLAGAGSPL--DYNGWRKVIDPLLSE  147 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffI---NG~~~~ga~s~~--~~e~~~~~Id~~l~~  147 (160)
                      ....++++||.|+||+++   ||+.+... +..  +.+++.+.|+.++++
T Consensus       105 ~~~l~~~~~v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~~  153 (154)
T 2ju5_A          105 NQELKAQYKVTGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALKL  153 (154)
T ss_dssp             HHHHHHHTTCCSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHhc
Confidence            345678899999999988   78876522 333  699999999998864

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=95.97  E-value=0.0086  Score=40.89  Aligned_cols=38  Identities=16%  Similarity=0.263  Sum_probs=29.0

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id  142 (160)
                      ..++++||.|+||+++  ||+.+....+..+.+++.++|+
T Consensus        78 ~~~~~~~i~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           78 AFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             HHHHHHTCCSSCEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             HHHHHcCCCCCCeEEEEECCEEEEEecCCCCHHHHHHHhh
Confidence            4578899999999987  8987644444566888888774

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=95.94  E-value=0.0033  Score=42.20  Aligned_cols=40  Identities=20%  Similarity=0.278  Sum_probs=30.1

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      .++++||.++||+++  ||+.+....+ .+.+++.++|++.+.
T Consensus        71 ~~~~~~v~~~Pt~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           71 VAEEWNVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             HHHHHHCSSTTEEEEEETTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             HHHhCCCCcccEEEEEeCCEEEEEEec-CCHHHHHHHHHHhhc
Confidence            456779999999999  9997532222 457899999988764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=95.93  E-value=0.0075  Score=42.89  Aligned_cols=43  Identities=21%  Similarity=0.081  Sum_probs=33.1

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++.+||.|+|+++|   ||+.+.-..+..+.+++.+.|+.++.+.
T Consensus       109 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~  154 (158)
T 3eyt_A          109 TMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGEA  154 (158)
T ss_dssp             HHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTSC
T ss_pred             HHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhccC
Confidence            467789999997776   7887643333556999999999999765

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=94.92  E-value=0.0013  Score=43.38  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=30.8

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.++||+++  ||+.+....+..+.+++.+.|++++
T Consensus        64 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 2yj7_A           64 NTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL  106 (106)
Confidence            4578899999999999  8987643344555788888877653

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=95.91  E-value=0.0025  Score=42.95  Aligned_cols=42  Identities=14%  Similarity=0.098  Sum_probs=31.1

Q ss_pred             HHhhcCCccccceEEE--CCEEe--cCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSL--AGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~--~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+++.||.|+||+++  ||+.+  ....+..+.+++.++|++.+.
T Consensus        72 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           72 DLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             SSHHHHTCCSSSEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             HHHHHCCCCcccEEEEEeCCCcCCcccccCccCHHHHHHHHHhccC
Confidence            3456789999999999  88654  223346669999999987664

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=95.89  E-value=0.0093  Score=46.83  Aligned_cols=42  Identities=14%  Similarity=0.283  Sum_probs=33.6

Q ss_pred             HhhcCCccccceEEECCEEe-cCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378          106 FSATRGVYATPTFFVNGFSL-AGAGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~~~-~ga~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      .+.+.||.|+||+++||+.+ .|   ..+.+++.+.|++.+...+.
T Consensus       188 ~~~~~~V~~vPt~~i~G~~~~~G---~~~~~~l~~~l~~~~~~~~~  230 (243)
T 2hls_A          188 IADKYGVMSVPSIAINGYLVFVG---VPYEEDFLDYVKSAAEGRLT  230 (243)
T ss_dssp             HHHHTTCCSSSEEEETTEEEEES---CCCHHHHHHHHHHHHTTCCC
T ss_pred             HHHHcCCeeeCeEEECCEEEEeC---CCCHHHHHHHHHHHhhcccc
Confidence            46778999999999999864 34   45599999999999866543

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=95.88  E-value=0.0096  Score=38.22  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=25.6

Q ss_pred             hhcCC--ccccceEEECCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          107 SATRG--VYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       107 a~~~G--V~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ++..|  +.++|++++||+.+.|      .+++.+++++-+
T Consensus        49 ~~~~~~~~~~vP~i~~~g~~i~~------~~~l~~~~~~~~   83 (85)
T 1ego_A           49 QQKAGKPVETVPQIFVDQQHIGG------YTDFAAWVKENL   83 (85)
T ss_dssp             HHHTCCCSCCSCEEEETTEEEES------SHHHHHHHHHHH
T ss_pred             HHHhCCCCceeCeEEECCEEEEC------HHHHHHHHHHhc
Confidence            44455  9999999999999854      578888877654

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=95.87  E-value=0.0064  Score=41.19  Aligned_cols=40  Identities=20%  Similarity=0.250  Sum_probs=29.8

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||.|+||+++  ||+.+....+. +.+++.++|++.+
T Consensus        68 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           68 DVAQKNEVSAMPTLLLFKNGKEVAKVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             HHHHHcCCCccCEEEEEECCEEEEEEeCC-CHHHHHHHHHhhC
Confidence            3577899999999998  99876522222 4688998888753

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=95.86  E-value=0.0058  Score=41.79  Aligned_cols=40  Identities=18%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      .++.+||.|+|++++   ||+.+ ...+..+.+++.+.|++++.
T Consensus        93 ~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           93 VWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             HHHHTTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             HHHHcCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence            456789999999988   89884 22234559999999998874

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=95.83  E-value=0.0077  Score=42.26  Aligned_cols=43  Identities=30%  Similarity=0.418  Sum_probs=33.1

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ..++++||.|+||+++  ||+.+....+. +.+++.++|+..+...
T Consensus        90 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~~  134 (139)
T 3d22_A           90 DFSASWEIKATPTFFFLRDGQQVDKLVGA-NKPELHKKITAILDSL  134 (139)
T ss_dssp             HHHHHTTCCEESEEEEEETTEEEEEEESC-CHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCCcccEEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhccC
Confidence            4578899999999988  89876422223 5899999999988654

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=95.82  E-value=0.0053  Score=42.18  Aligned_cols=40  Identities=15%  Similarity=0.270  Sum_probs=29.2

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||+|+||+++  ||+.+....+ ...+++.+.|++++
T Consensus        82 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G-~~~~~l~~~i~~~~  123 (124)
T 1faa_A           82 TLAKELGIRVVPTFKILKENSVVGEVTG-AKYDKLLEAIQAAR  123 (124)
T ss_dssp             HHHHHHCCSSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHHT
T ss_pred             HHHHHcCCCeeeEEEEEeCCcEEEEEcC-CCHHHHHHHHHHhh
Confidence            3467789999999988  9988632222 23788888888764

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=95.71  E-value=0.0074  Score=42.00  Aligned_cols=39  Identities=21%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      ..+++.||.|+||+++  ||+.+....+..+.+++.+.|++
T Consensus        87 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B           87 SLARKFSVKSLPTIILLKNKTMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHTT
T ss_pred             HHHHHcCCCCcCEEEEEECCEEEEEecCCCCHHHHHHHHHh
Confidence            4578899999999999  99887544445668998888763

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=95.71  E-value=0.0071  Score=42.75  Aligned_cols=42  Identities=21%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             HhhcCCccccceEEE----CCE--EecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV----NGF--SLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI----NG~--~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++++||.|+||+++    ||+  .+....+. +.+++.+.|++++..+
T Consensus        84 l~~~~~v~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~~~  131 (133)
T 3cxg_A           84 LNDQHNIKALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCLEK  131 (133)
T ss_dssp             HHHHTTCCSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSEEC
T ss_pred             HHHhcCCCCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHHhh
Confidence            467899999999977    898  33211112 5899999999987654

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=95.69  E-value=0.0053  Score=43.14  Aligned_cols=42  Identities=19%  Similarity=0.305  Sum_probs=31.7

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..++++||.|+||+++   ||+... ..+..+.+++.++|+.++.+
T Consensus        96 ~~~~~~~v~~~Pt~~~~~~~g~~~~-~~G~~~~~~l~~~l~~~l~k  140 (141)
T 3hxs_A           96 ELARDFGIQSIPTIWFVPMKGEPQV-NMGALSKEQLKGYIDKVLLK  140 (141)
T ss_dssp             HHHHHTTCCSSSEEEEECSSSCCEE-EESCCCHHHHHHHHHHTTC-
T ss_pred             HHHHHcCCCCcCEEEEEeCCCCEEE-EeCCCCHHHHHHHHHHHHcc
Confidence            4578899999999998   676442 23355699999999998764

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=95.67  E-value=0.0086  Score=42.59  Aligned_cols=43  Identities=19%  Similarity=0.098  Sum_probs=32.8

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++++||.|+|++++   ||+.+....+..+.+++.+.|+.+++++
T Consensus       112 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~  157 (160)
T 3lor_A          112 TMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSET  157 (160)
T ss_dssp             HHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTCC
T ss_pred             HHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhcc
Confidence            456789999997777   6887643333556999999999999764

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.62  E-value=0.012  Score=40.57  Aligned_cols=42  Identities=17%  Similarity=0.109  Sum_probs=33.7

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .+++.||.++||+++  ||++.. ..+..+.+++.++|++.+.+.
T Consensus        69 ~~~~~~v~~~Pt~~~~~~G~~~~-~~G~~~~~~l~~~l~~~~~~~  112 (126)
T 1x5e_A           69 LSGRFIINALPTIYHCKDGEFRR-YQGPRTKKDFINFISDKEWKS  112 (126)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEE-CCSCCCHHHHHHHHHTCGGGG
T ss_pred             HHHHcCCcccCEEEEEeCCeEEE-eecCCCHHHHHHHHHHHhhcc
Confidence            577899999999999  998643 344667999999999888655

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=95.60  E-value=0.0063  Score=40.95  Aligned_cols=40  Identities=15%  Similarity=0.253  Sum_probs=28.9

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||.|+||+++  ||+.+.... +...+++.++|++++
T Consensus        69 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~-G~~~~~l~~~l~~~~  110 (111)
T 2pu9_C           69 TLAKELGIRVVPTFKILKENSVVGEVT-GAKYDKLLEAIQAAR  110 (111)
T ss_dssp             HHHHHHCCSBSSEEEEESSSSEEEEEE-SSCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCeeeEEEEEeCCcEEEEEc-CCCHHHHHHHHHHhh
Confidence            4567789999999888  888753222 224788888888765

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=95.55  E-value=0.036  Score=39.07  Aligned_cols=69  Identities=10%  Similarity=0.037  Sum_probs=45.0

Q ss_pred             HHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378           70 EIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus        70 ~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      ..++..++. |++ +++| +--+++..-..-..-.+.-.+.|+.++|..+|||+.+. ...+.+.+++.+++.
T Consensus        34 ~~~~~lk~~-Gi~-V~Ry-NL~~~P~~F~~N~~V~~~L~~~G~~~LP~~~VDGevv~-~G~yPt~eEl~~~lg  102 (106)
T 3ktb_A           34 VVIESLKKQ-GII-VTRH-NLRDEPQVYVSNKTVNDFLQKHGADALPITLVDGEIAV-SQTYPTTKQMSEWTG  102 (106)
T ss_dssp             HHHHHHHHT-TCC-CEEE-ETTTCTTHHHHSHHHHHHHHTTCGGGCSEEEETTEEEE-CSSCCCHHHHHHHHC
T ss_pred             HHHHHHHHC-CCE-EEEE-ccccChHHHhcCHHHHHHHHHcCcccCCEEEECCEEEE-eccCCCHHHHHHHhC
Confidence            345555554 877 5655 33344443333222344567899999999999999984 345778999988763

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=95.50  E-value=0.0092  Score=45.51  Aligned_cols=41  Identities=15%  Similarity=0.169  Sum_probs=32.8

Q ss_pred             HHhhcCCccccceEEECCEE--ecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          105 KFSATRGVYATPTFFVNGFS--LAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~--~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ..+++.||.|+||+++||+.  +.|   ..+.+++.+.|+..+.+.
T Consensus       180 ~l~~~~~v~~~Pt~~~~G~~~~~~G---~~~~~~l~~~l~~~~~~~  222 (229)
T 2ywm_A          180 DLAEQFQVVGVPKIVINKGVAEFVG---AQPENAFLGYIMAVYEKL  222 (229)
T ss_dssp             HHHHHTTCCSSSEEEEGGGTEEEES---CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcccCEEEECCEEEEeeC---CCCHHHHHHHHHHHhhhh
Confidence            35778999999999999985  345   455999999999888543

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=94.49  E-value=0.0023  Score=44.40  Aligned_cols=47  Identities=17%  Similarity=0.143  Sum_probs=34.9

Q ss_pred             HHHhhcCCccccceEEE----CCEE--ecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378          104 FKFSATRGVYATPTFFV----NGFS--LAGAGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI----NG~~--~~ga~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      ...++++||.|+||+++    ||+.  +....+..+.+++.+.|+.++.+...
T Consensus        68 ~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~  120 (130)
T 2lst_A           68 QELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGGA  120 (130)
Confidence            34678899999999988    5887  33233345588999999999876644

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=95.44  E-value=0.011  Score=48.61  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             HHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          104 FKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .+.+++.||+|.||+++||+.+.|..+   .+++.++++
T Consensus       241 ~~la~~~gI~~vPT~~i~G~~~~G~~~---~~~L~~~l~  276 (291)
T 3kp9_A          241 AQECTEAGITSYPTWIINGRTYTGVRS---LEALAVASG  276 (291)
T ss_dssp             CHHHHTTTCCSTTEEEETTEEEESCCC---HHHHHHHTC
T ss_pred             HHHHHHcCCcccCeEEECCEEecCCCC---HHHHHHHHC
Confidence            345789999999999999999988665   888777764

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=95.41  E-value=0.01  Score=41.71  Aligned_cols=44  Identities=20%  Similarity=0.391  Sum_probs=33.7

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      ..++++||.++||+++   ||+.+. ..+..+.+++.++|++.+...+
T Consensus        83 ~l~~~~~v~~~Pt~~~~~~~G~~~~-~~G~~~~~~l~~~l~~~~~~~~  129 (136)
T 2l5l_A           83 ELAGAFGIRSIPSILFIPMEGKPEM-AQGAMPKASFKKAIDEFLLKKE  129 (136)
T ss_dssp             HHHHHTTCCSSCEEEEECSSSCCEE-EESCCCHHHHHHHHHHHHTSCT
T ss_pred             HHHHHcCCCCCCEEEEECCCCcEEE-EeCCCCHHHHHHHHHHHhhccC
Confidence            3567889999999987   787742 2335669999999999886653

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=95.35  E-value=0.013  Score=41.41  Aligned_cols=46  Identities=15%  Similarity=0.032  Sum_probs=33.8

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      ..++.+||.++|++++   ||+.+....+..+.+++.+.|++.+...++
T Consensus       100 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~  148 (154)
T 3ia1_A          100 EVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLEG  148 (154)
T ss_dssp             HHHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC--
T ss_pred             HHHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcccc
Confidence            4578899999999554   788764333456699999999999866643

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=95.35  E-value=0.018  Score=37.06  Aligned_cols=32  Identities=19%  Similarity=0.486  Sum_probs=25.9

Q ss_pred             CccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       111 GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ++.++|+++|||+.+.|      ++++.+++++.+.+|
T Consensus        58 ~~~~vP~i~i~g~~i~g------~~~i~~~~~~~~~~~   89 (89)
T 3msz_A           58 PISTVPQIFIDDEHIGG------FTELKANADKILNKK   89 (89)
T ss_dssp             CCCSSCEEEETTEEEES------HHHHHHTHHHHTTC-
T ss_pred             CCCccCEEEECCEEEeC------hHHHHHHHHHHhcCC
Confidence            44999999999998854      899999888877643

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=95.34  E-value=0.01  Score=43.60  Aligned_cols=44  Identities=23%  Similarity=0.261  Sum_probs=34.5

Q ss_pred             HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      -..+++.||.+.||+++  ||+.+.-..+..+.+++.+.|++.+..
T Consensus        79 ~~la~~ygV~siPTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l~~  124 (137)
T 2qsi_A           79 RGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAE  124 (137)
T ss_dssp             HHHHHHHTCCSSSEEEEEECCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCccCCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            45689999999999999  999975333344488999999988743

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=95.32  E-value=0.018  Score=41.71  Aligned_cols=43  Identities=9%  Similarity=0.112  Sum_probs=33.3

Q ss_pred             HhhcCCccccceEEE--CCEEe---------cCCCC-CCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV--NGFSL---------AGAGS-PLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~---------~ga~s-~~~~e~~~~~Id~~l~~~  148 (160)
                      .++++||.|+||+++  ||+.+         ....+ ..+.+++.+.|+.++.+.
T Consensus        69 l~~~~~v~~~Pt~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~  123 (149)
T 3gix_A           69 YTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA  123 (149)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCccCeEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHh
Confidence            577899999999988  89887         43333 456899999999997443

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=95.26  E-value=0.017  Score=38.54  Aligned_cols=39  Identities=31%  Similarity=0.325  Sum_probs=27.9

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+++.||.|+||+++  ||+.+....+ ...+++.+.|++.+
T Consensus        66 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  106 (107)
T 1gh2_A           66 TAATNNISATPTFQFFRNKVRIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             HHHhcCCCcccEEEEEECCeEEEEEeC-CCHHHHHHHHHHhc
Confidence            567899999999988  8987642222 33466888887765

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=95.25  E-value=0.01  Score=43.34  Aligned_cols=42  Identities=14%  Similarity=0.178  Sum_probs=34.0

Q ss_pred             hhcCCccccceEEE---CCEEecCCCCCCC-HHHHHHHHHHHhhhc
Q 031378          107 SATRGVYATPTFFV---NGFSLAGAGSPLD-YNGWRKVIDPLLSEK  148 (160)
Q Consensus       107 a~~~GV~GTPTffI---NG~~~~ga~s~~~-~e~~~~~Id~~l~~~  148 (160)
                      +++.||.|+||+++   ||+.+....+..+ .+++.+.|++.+.+-
T Consensus       123 ~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~  168 (172)
T 3f9u_A          123 RVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENY  168 (172)
T ss_dssp             HHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence            57889999999877   7988765555666 999999999988653

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=95.22  E-value=0.02  Score=40.16  Aligned_cols=41  Identities=15%  Similarity=0.153  Sum_probs=30.7

Q ss_pred             HHHhhcCCccccceEEE---CCEEe--cCCCCCCCHHHHHHHHHHH
Q 031378          104 FKFSATRGVYATPTFFV---NGFSL--AGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI---NG~~~--~ga~s~~~~e~~~~~Id~~  144 (160)
                      ...++++||.|+||+++   ||+.+  ....+..+.+++.+.|+.+
T Consensus        81 ~~l~~~~~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           81 VALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             HHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence            44678899999999988   79886  2234456688888888754

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=95.20  E-value=0.0023  Score=43.69  Aligned_cols=39  Identities=15%  Similarity=0.311  Sum_probs=26.2

Q ss_pred             HhhcCCccccceEEECCEEecCCCCCC---CHHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFVNGFSLAGAGSPL---DYNGWRKVIDPL  144 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~~~~ga~s~~---~~e~~~~~Id~~  144 (160)
                      .+...||.++||+|+||+.+.+..+..   +.+++.++|+++
T Consensus        65 l~~~~~v~~~Pt~~~~g~~v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           65 LAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHHSCCSSCEEEETTEEEECHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHhCCCCcCEEEECCEEECChHHHHHHHhCChHHHHHHHc
Confidence            466789999999999999986432211   233566666654

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=95.20  E-value=0.016  Score=41.67  Aligned_cols=45  Identities=16%  Similarity=0.130  Sum_probs=34.0

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      ..++++||.|+||+++  ||+.+.... +.+.+++.+.|++.+....+
T Consensus        76 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~-G~~~~~l~~~i~~~l~~~~~  122 (153)
T 2wz9_A           76 EVSEKYEISSVPTFLFFKNSQKIDRLD-GAHAPELTKKVQRHASSGSF  122 (153)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEE-SSCHHHHHHHHHHHSCTTSS
T ss_pred             HHHHHcCCCCCCEEEEEECCEEEEEEe-CCCHHHHHHHHHHHhccccC
Confidence            3567899999999999  998864222 23578899999999866533

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=95.10  E-value=0.0054  Score=42.22  Aligned_cols=42  Identities=17%  Similarity=0.193  Sum_probs=32.8

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++++||.++||+++  ||+.+....+ .+.+++.+.|+..+...
T Consensus        81 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~~  124 (130)
T 1wmj_A           81 VAEKYNVEAMPTFLFIKDGAEADKVVG-ARKDDLQNTIVKHVGAT  124 (130)
T ss_dssp             GHHHHTCCSSCCCCBCTTTTCCBCCCT-TCTTTHHHHHHHHTSSS
T ss_pred             HHHHcCCCccceEEEEeCCeEEEEEeC-CCHHHHHHHHHHHHhcc
Confidence            466789999999999  8987643333 56789999999988654

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=95.08  E-value=0.024  Score=40.08  Aligned_cols=45  Identities=16%  Similarity=0.038  Sum_probs=32.7

Q ss_pred             HhhcCC--ccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378          106 FSATRG--VYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       106 ~a~~~G--V~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      .++.+|  |.++|+++|   ||+.+....+..+.+++.+.|+++..++.+
T Consensus        95 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~~~  144 (151)
T 3raz_A           95 FMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCRE  144 (151)
T ss_dssp             HHHTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC---
T ss_pred             HHHHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence            456778  999997666   788755444566799999999999876644

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=95.07  E-value=0.009  Score=42.64  Aligned_cols=43  Identities=7%  Similarity=0.037  Sum_probs=32.4

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++++||.++||+++   ||+.+....+..+.+++.+.|++++...
T Consensus       113 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~~  158 (164)
T 2h30_A          113 IAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNADL  158 (164)
T ss_dssp             HHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTCCC
T ss_pred             HHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            467789999999987   7887542223556999999999887543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=95.04  E-value=0.016  Score=40.88  Aligned_cols=43  Identities=30%  Similarity=0.468  Sum_probs=31.3

Q ss_pred             HhhcCCccccc-eEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATP-TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTP-TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++++||.++| +|+|  ||+.+....+..+.+++.+.|+.++.+.
T Consensus       109 ~~~~~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~  154 (156)
T 1kng_A          109 ASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA  154 (156)
T ss_dssp             HHHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred             HHHhcCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            45778999999 5666  7887532223455899999999988653

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=95.04  E-value=0.035  Score=39.41  Aligned_cols=68  Identities=12%  Similarity=0.118  Sum_probs=43.7

Q ss_pred             HHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378           71 IVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus        71 la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .++..++. |++ +++| +--+++..-..-..-.+.-.+.|+.++|..+|||+.+. ...+.+.+++.+++.
T Consensus        32 ~~~~lk~~-Gi~-V~Ry-NL~~~P~aF~~N~~V~~~L~~~G~~~LP~~~VDGevv~-~G~yPt~eEl~~~lg   99 (110)
T 3kgk_A           32 DVQWLKQS-GVQ-IERF-NLAQQPMSFVQNEKVKAFIEASGAEGLPLLLLDGETVM-AGRYPKRAELARWFG   99 (110)
T ss_dssp             HHHHHHHH-TCC-EEEE-ETTTCTTHHHHSHHHHHHHHHHCGGGCCEEEETTEEEE-ESSCCCHHHHHHHHT
T ss_pred             HHHHHHHC-CCe-EEEE-ccccChHHHhcCHHHHHHHHHcCcccCCEEEECCEEEE-eccCCCHHHHHHHhC
Confidence            44444454 777 5554 23344443332222244567889999999999999984 335678999988775

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=94.99  E-value=0.02  Score=43.38  Aligned_cols=44  Identities=11%  Similarity=0.211  Sum_probs=34.7

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ..+++.||.|+||+++  ||+.+....+..+.+++.++|+..+...
T Consensus       159 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~~  204 (210)
T 3apq_A          159 MLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRST  204 (210)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSCCEECCSCCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCCcCCeEEEEECCCceeEecCCCCHHHHHHHHHHhCccc
Confidence            4567899999999998  8886543344667999999999988654

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=94.85  E-value=0.048  Score=38.57  Aligned_cols=43  Identities=9%  Similarity=0.174  Sum_probs=33.7

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      ..++.+||.++||+++   ||+.+...   .+.+++.+.|++++....+
T Consensus       100 ~~~~~~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~l~~~~~~  145 (152)
T 2lrn_A          100 DVLESYCIVGFPHIILVDPEGKIVAKE---LRGDDLYNTVEKFVNGAKE  145 (152)
T ss_dssp             HHHHHTTCCSSCEEEEECTTSEEEEEC---CCTTHHHHHHHHHHTSSSS
T ss_pred             HHHHHhCCCcCCeEEEECCCCeEEEee---CCHHHHHHHHHHHHhhccc
Confidence            4567899999999766   79987653   3478999999999876644

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=94.84  E-value=0.021  Score=39.07  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=29.4

Q ss_pred             HhhcCCccccceEEE---CCEEecCCC---CCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAG---SPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~---s~~~~e~~~~~Id~~l  145 (160)
                      .++++||.++|++++   ||+.. ...   +..+.+++.+.|++++
T Consensus        91 ~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           91 IWARYNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             HHHHTTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             HHHhcCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            456789999999988   88884 223   4566999999998765

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=94.84  E-value=0.019  Score=35.79  Aligned_cols=31  Identities=16%  Similarity=0.237  Sum_probs=24.7

Q ss_pred             hcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      ++.|+.++|++++||+.+.|    ++.++|.++|+
T Consensus        44 ~~~~~~~vP~l~~~g~~~~g----~~~~~l~~~l~   74 (75)
T 1r7h_A           44 MALGYVQAPVVEVDGEHWSG----FRPERIKQLQA   74 (75)
T ss_dssp             HHTTCBCCCEEEETTEEEES----CCHHHHHHHHC
T ss_pred             HHcCCCccCEEEECCeEEcC----CCHHHHHHHHh
Confidence            45899999999999998754    44688877764

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=94.80  E-value=0.021  Score=40.58  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=29.9

Q ss_pred             hcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378          108 ATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       108 ~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      ...||.++|+++|   ||+.+.-..+..+.+++.+.|+.++.+...
T Consensus       110 ~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~  155 (165)
T 3or5_A          110 IDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAA  155 (165)
T ss_dssp             STTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC----
T ss_pred             hccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhcc
Confidence            3348999999666   788754333455699999999999976644

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=94.79  E-value=0.016  Score=39.67  Aligned_cols=38  Identities=21%  Similarity=0.190  Sum_probs=26.7

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      ..+++.||.|+||+++  ||+.+....+.. .+++.++|++
T Consensus        74 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           74 DIAKECEVTAMPTFVLGKDGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             HHHHHTTCCSBSEEEEEETTEEEEEEESSC-HHHHHHHHHT
T ss_pred             HHHHHCCCCcccEEEEEeCCeEEEEEeCCC-HHHHHHHHHh
Confidence            3567889999999998  999853222233 6777777653

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=94.64  E-value=0.021  Score=38.69  Aligned_cols=39  Identities=18%  Similarity=0.175  Sum_probs=29.2

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      .++++||.++|++++   ||+.+....+..+.+++.+.|+++
T Consensus        96 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           96 LLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             HHHHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            467789999999988   788764333355689999888764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=94.62  E-value=0.028  Score=42.50  Aligned_cols=40  Identities=15%  Similarity=0.160  Sum_probs=29.8

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+++.||.|+||+++  ||....-..+..+.+++.+.|++.+
T Consensus       184 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          184 WADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHHHTTCCSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHhCCCcccCeEEEEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence            577899999999998  6765432223455899999998875

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=94.60  E-value=0.074  Score=40.24  Aligned_cols=44  Identities=9%  Similarity=0.032  Sum_probs=36.4

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      ..++++||+|+||+++  ||..+. ..+..+.+++.+.|+..+....
T Consensus        80 ~l~~~~~v~~~Pt~~~~~~g~~~~-~~g~~~~~~l~~~i~~~~~~~~  125 (241)
T 3idv_A           80 VLASRFDVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVREVSQPDW  125 (241)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEE-CCSCSCHHHHHHHHHHHHSTTC
T ss_pred             HHHHhcCCCcCCEEEEEcCCCccc-ccCcccHHHHHHHHhhccCccc
Confidence            4578899999999988  888774 5567889999999999887653

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=94.55  E-value=0.02  Score=41.12  Aligned_cols=40  Identities=10%  Similarity=0.082  Sum_probs=30.7

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCC-CHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPL-DYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~-~~e~~~~~Id~~l~  146 (160)
                      ..++++||.++|+++|   ||+.+.  .+.. +.+++.+.|++++.
T Consensus       121 ~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          121 SLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             HHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC--
T ss_pred             HHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHhc
Confidence            3467789999999998   788876  3455 69999999998764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=94.51  E-value=0.051  Score=41.16  Aligned_cols=42  Identities=14%  Similarity=0.133  Sum_probs=34.6

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..++++||+|+||+++  ||+.+. ..+..+.+++.+.|.+.+.+
T Consensus       195 ~l~~~~~v~~~Pt~~~~~~g~~~~-~~g~~~~~~l~~~l~~~~~~  238 (241)
T 3idv_A          195 DLAKRFDVSGYPTLKIFRKGRPYD-YNGPREKYGIVDYMIEQSGA  238 (241)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEE-CCSCCSHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCcccCEEEEEECCeEEE-ecCCCCHHHHHHHHHhhhCC
Confidence            3578899999999988  898875 56678899999999887643

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.47  E-value=0.029  Score=38.58  Aligned_cols=44  Identities=14%  Similarity=0.011  Sum_probs=31.0

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ..++++||.++||+++   +|..+....+..+.+++.+.|.+.+.+.
T Consensus        80 ~l~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~~~  126 (130)
T 2dml_A           80 SLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSG  126 (130)
T ss_dssp             HHHHHHTCCSSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHHHS
T ss_pred             HHHHHcCCCccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHhcC
Confidence            3567789999999988   4431222233556999999999888654

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=94.42  E-value=0.0088  Score=38.21  Aligned_cols=33  Identities=12%  Similarity=0.199  Sum_probs=24.5

Q ss_pred             cCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          109 TRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       109 ~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      +.|+.++|++++||+.+.|    ++.++++++|++.+
T Consensus        45 ~~g~~~vP~~~~~g~~~~g----~~~~~l~~~l~~~~   77 (81)
T 1h75_A           45 AQGFRQLPVVIAGDLSWSG----FRPDMINRLHPAPH   77 (81)
T ss_dssp             HTTCCSSCEEEETTEEEES----CCHHHHGGGSCCC-
T ss_pred             HhCCCccCEEEECCEEEec----CCHHHHHHHHhccc
Confidence            5799999999999998754    34677776665443

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=94.42  E-value=0.065  Score=38.31  Aligned_cols=44  Identities=11%  Similarity=0.167  Sum_probs=32.5

Q ss_pred             HhhcCCccccceEEE--CCEEec---------CCCCCC-CHHHHHHHHHHHhhhcC
Q 031378          106 FSATRGVYATPTFFV--NGFSLA---------GAGSPL-DYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~---------ga~s~~-~~e~~~~~Id~~l~~~~  149 (160)
                      .++++||.|+||+++  ||+.+.         ...+.. +.+++.+.|++++.+..
T Consensus        69 ~~~~~~i~~~Pt~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~~  124 (142)
T 1qgv_A           69 FNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGAR  124 (142)
T ss_dssp             TTTSSCSCSSCEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCEEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHHh
Confidence            478999999999977  888764         111222 38899999999986543

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=94.34  E-value=0.04  Score=38.18  Aligned_cols=40  Identities=18%  Similarity=0.157  Sum_probs=30.7

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..++++||.++|++++   ||+.+....   +.+++.+.|++++.+
T Consensus       105 ~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~~  147 (148)
T 3fkf_A          105 ETAKQYAILTLPTNILLSPTGKILARDI---QGEALTGKLKELLKT  147 (148)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC--
T ss_pred             HHHHhcCCCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHHcc
Confidence            3467789999999777   798876433   699999999998753

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=94.33  E-value=0.031  Score=38.78  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=26.1

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .++.+||.++|++++   ||+.+....+   .+++.++++.+.
T Consensus       103 ~~~~~~i~~~P~~~lid~~G~i~~~~~g---~~~~~~~l~~l~  142 (148)
T 3hcz_A          103 FKITYDIYATPVLYVLDKNKVIIAKRIG---YENLDDFLVQYE  142 (148)
T ss_dssp             HHHHHCCCSSCEEEEECTTCBEEEESCC---GGGHHHHHHHHH
T ss_pred             HHHhcCcCCCCEEEEECCCCcEEEecCC---HHHHHHHHHHHH
Confidence            456789999999888   8988765444   566666655554

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=94.28  E-value=0.027  Score=43.10  Aligned_cols=44  Identities=20%  Similarity=0.294  Sum_probs=34.8

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      .++++||.|+||+++  ||+.+.-..+..+.+++.++|+..+....
T Consensus        76 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~  121 (222)
T 3dxb_A           76 TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSA  121 (222)
T ss_dssp             TGGGGTCCSBSEEEEEETTEEEEEEESCCCHHHHHHHHHHHSCCSC
T ss_pred             HHHHcCCCcCCEEEEEECCeEEEEeccccChHHHHHHHHhhccccc
Confidence            467899999999999  89876433345669999999999986553

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=94.24  E-value=0.035  Score=36.32  Aligned_cols=33  Identities=15%  Similarity=0.335  Sum_probs=26.4

Q ss_pred             HhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      +.+..|+.++|++++||..+.|    ++.++|.++|+
T Consensus        59 l~~~~g~~~vP~l~~~g~~i~G----~~~~~l~~~l~   91 (92)
T 3ic4_A           59 VHSISGSYSVPVVVKGDKHVLG----YNEEKLKELIR   91 (92)
T ss_dssp             HHHHHSSSCSCEEEETTEEEES----CCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEECCEEEeC----CCHHHHHHHhc
Confidence            3456789999999999998854    45788888875

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=94.10  E-value=0.04  Score=38.28  Aligned_cols=36  Identities=11%  Similarity=0.100  Sum_probs=28.2

Q ss_pred             hhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          107 SATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       107 a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ++..||.++|++++   +|+.+.+   ..+.+++.++|++..
T Consensus       102 ~~~~~v~~~P~~~lid~~G~i~~~---~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          102 RQLYDIRATPTIYLLDGRKRVILK---DTSMEQLIDYLATQA  140 (142)
T ss_dssp             TTCSCCCSSSEEEEECTTCBEEEC---SCCHHHHHHHHHC--
T ss_pred             HHHcCCCCCCeEEEECCCCCEEec---CCCHHHHHHHHHHHc
Confidence            66899999999877   7988876   455999999888654

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=94.05  E-value=0.06  Score=37.22  Aligned_cols=41  Identities=15%  Similarity=0.175  Sum_probs=31.4

Q ss_pred             HHhhcCCc---cccceEEE---CCEEecCCCC-------CCCHHHHHHHHHHHh
Q 031378          105 KFSATRGV---YATPTFFV---NGFSLAGAGS-------PLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV---~GTPTffI---NG~~~~ga~s-------~~~~e~~~~~Id~~l  145 (160)
                      ..++++||   .|+||+++   ||+.+....+       ..+.+++.++|+.+.
T Consensus        79 ~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           79 ELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             HHHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHhCCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence            45788999   99999998   8887743323       467899999988764

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=94.05  E-value=0.027  Score=38.87  Aligned_cols=37  Identities=14%  Similarity=0.174  Sum_probs=27.1

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .++++||.++|++++   ||+.+....+..+.+++.++|+
T Consensus       106 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  145 (145)
T 3erw_A          106 LMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE  145 (145)
T ss_dssp             HHHHTTCCEESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred             HHHhcCcCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence            467889999999777   7877543333556899888774

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=94.00  E-value=0.023  Score=40.82  Aligned_cols=42  Identities=31%  Similarity=0.592  Sum_probs=30.2

Q ss_pred             HhhcCCccccc-eEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          106 FSATRGVYATP-TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       106 ~a~~~GV~GTP-TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      .++++||.|+| +|+|  ||+.+....+..+.+++.+.|+.++.+
T Consensus       117 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  161 (168)
T 2b1k_A          117 LGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEK  161 (168)
T ss_dssp             HHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHH
T ss_pred             HHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            35667999999 6666  687753223355689999999888754

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=93.83  E-value=0.053  Score=37.34  Aligned_cols=40  Identities=8%  Similarity=-0.208  Sum_probs=28.0

Q ss_pred             HHhhcCCccccceEEE--CCEEec--CCCCCCCHHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLA--GAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~--ga~s~~~~e~~~~~Id~~  144 (160)
                      ..+++.||.|+||+++  +|....  ...+..+.+++.++|++.
T Consensus        83 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           83 DVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             HHHHHTTCCSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             hHHHhcCCccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            4578899999999988  554311  122356699999998763

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=93.75  E-value=0.053  Score=34.31  Aligned_cols=30  Identities=17%  Similarity=0.380  Sum_probs=23.0

Q ss_pred             hhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .+..|+.++|++++||+.+.|      ++++.++++
T Consensus        44 ~~~~~~~~vP~l~~~g~~i~g------~~~i~~~~~   73 (82)
T 1fov_A           44 IKRSGRTTVPQIFIDAQHIGG------YDDLYALDA   73 (82)
T ss_dssp             HHHHSSCCSCEEEETTEEEES------HHHHHHHHH
T ss_pred             HHHhCCCCcCEEEECCEEEeC------HHHHHHHHH
Confidence            445689999999999998854      666666554

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=93.74  E-value=0.016  Score=39.52  Aligned_cols=44  Identities=14%  Similarity=-0.005  Sum_probs=30.4

Q ss_pred             HHhhcCCccccceEEE--CCEEe---cCC-CCCCCHHHHHHHHHHHhhhc
Q 031378          105 KFSATRGVYATPTFFV--NGFSL---AGA-GSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~---~ga-~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ..++++||.|+||+++  +|..+   .|. .+..+.+++.+.|+..+...
T Consensus        66 ~~~~~~~v~~~Pt~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~  115 (122)
T 3aps_A           66 QTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETL  115 (122)
T ss_dssp             HHHHHTTCCSSSEEEEEEEEGGGTEEEEEEECCSCHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCCccceEEEEeCCCccceeeccccCcCCHHHHHHHHHHHHHhh
Confidence            3567899999999988  33322   121 01256899999999998644

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=93.70  E-value=0.084  Score=38.80  Aligned_cols=42  Identities=7%  Similarity=-0.008  Sum_probs=31.1

Q ss_pred             hhcCCccccceEEE---CCEEecCCCCC-------CCHHHHHHHHHHHhhhc
Q 031378          107 SATRGVYATPTFFV---NGFSLAGAGSP-------LDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       107 a~~~GV~GTPTffI---NG~~~~ga~s~-------~~~e~~~~~Id~~l~~~  148 (160)
                      +.+.+|.|+||+++   ||+.+....+.       ++++++.++|+......
T Consensus        93 ~~~~~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A           93 NLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             GGCTTCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             HhhcCCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHH
Confidence            56789999999998   79887644444       56677777777765443

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=93.47  E-value=0.088  Score=37.05  Aligned_cols=40  Identities=23%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..++.+||.++|++++   ||+.+.-.   .+.+++.+.|++++.+
T Consensus       107 ~~~~~~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~ll~~  149 (150)
T 3fw2_A          107 EVAKQYSIYKIPANILLSSDGKILAKN---LRGEELKKKIENIVEE  149 (150)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSBEEEES---CCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCccCeEEEECCCCEEEEcc---CCHHHHHHHHHHHHhc
Confidence            3466789999999888   78887543   3589999999998864

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=93.39  E-value=0.047  Score=37.64  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=30.0

Q ss_pred             hhcCCccccceEEE--CCEEec--CCC-CCCCHHHHHHHHHHHhhhc
Q 031378          107 SATRGVYATPTFFV--NGFSLA--GAG-SPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       107 a~~~GV~GTPTffI--NG~~~~--ga~-s~~~~e~~~~~Id~~l~~~  148 (160)
                      ++++||.|+||+++  +|..+.  ... +..+.+++.++|+..+.+.
T Consensus        74 ~~~~~v~~~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           74 NDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             CSSCCCSSSSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             HhhcCCCcCCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence            56799999999988  553221  011 2466899999999998655

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=93.32  E-value=0.037  Score=37.47  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=28.4

Q ss_pred             HhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          106 FSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      .+.+.| .++|++++||+.+.  ...++.++++++|+..+.
T Consensus        59 l~~~~g-~~vP~l~~~g~~~~--~~g~~~~~l~~~l~~~~~   96 (100)
T 1wjk_A           59 WYERYK-FDIPVFHLNGQFLM--MHRVNTSKLEKQLRKLSG   96 (100)
T ss_dssp             HHHHSS-SSCSEEEESSSEEE--ESSCCHHHHHHHHHSSSC
T ss_pred             HHHHHC-CCCCEEEECCEEEE--ecCCCHHHHHHHHHHHHh
Confidence            356788 99999999999741  124668899888876654

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=93.30  E-value=0.036  Score=37.04  Aligned_cols=39  Identities=21%  Similarity=0.214  Sum_probs=28.2

Q ss_pred             hhcCCccccceEE-ECCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          107 SATRGVYATPTFF-VNGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       107 a~~~GV~GTPTff-ING~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      +.+.|++ .||++ +||+.+.|   .++.+++.+.|+..+...+
T Consensus        41 ~~~~g~~-vPtl~~~~G~~v~g---~~~~~~L~~~l~~~~~~~~   80 (87)
T 1ttz_A           41 ESAYGLR-VPVLRDPMGRELDW---PFDAPRLRAWLDAAPHALE   80 (87)
T ss_dssp             HHHHTTT-CSEEECTTCCEEES---CCCHHHHHHHHHTCC----
T ss_pred             HHHhCCC-cCeEEEECCEEEeC---CCCHHHHHHHHHHHHHHHh
Confidence            4456888 99999 89999864   5569999999987776554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=93.27  E-value=0.068  Score=41.97  Aligned_cols=41  Identities=29%  Similarity=0.501  Sum_probs=31.8

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||.|+||+++  ||+.+....+..+.+++.+.|+..+
T Consensus        71 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           71 MIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             HHHHTTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             HHHHHcCCCCCCeEEEEECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            4578999999999988  9987643334555888988888765

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=93.26  E-value=0.062  Score=37.60  Aligned_cols=43  Identities=28%  Similarity=0.282  Sum_probs=29.6

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCC--CCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGS--PLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s--~~~~e~~~~~Id~~l~~~  148 (160)
                      .++.+||.++|++++   ||+.+....+  ..+.+++.+.|++.+...
T Consensus        97 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~  144 (152)
T 3gl3_A           97 TPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGN  144 (152)
T ss_dssp             HHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred             hHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence            467789999999555   7877542212  345689999999888665

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=93.23  E-value=0.07  Score=39.23  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=32.2

Q ss_pred             hhcCCccccceEEE---CCEEecC---------CCCCCCHHHHHHHHHHHhhhcC
Q 031378          107 SATRGVYATPTFFV---NGFSLAG---------AGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       107 a~~~GV~GTPTffI---NG~~~~g---------a~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      ++.+||.++|+++|   ||+.+.-         ..+..+.+++.+.|+.++.++.
T Consensus       123 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  177 (196)
T 2ywi_A          123 AKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRP  177 (196)
T ss_dssp             HHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCC
T ss_pred             HHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCC
Confidence            45668999998877   7887632         1234578999999999997653

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=93.19  E-value=0.029  Score=39.46  Aligned_cols=45  Identities=24%  Similarity=0.293  Sum_probs=27.3

Q ss_pred             HhhcCCccccc-eEEE--CCEEec---CCCCCCCHHHHHHHHHHHhhhcCCC
Q 031378          106 FSATRGVYATP-TFFV--NGFSLA---GAGSPLDYNGWRKVIDPLLSEKGKK  151 (160)
Q Consensus       106 ~a~~~GV~GTP-TffI--NG~~~~---ga~s~~~~e~~~~~Id~~l~~~~~~  151 (160)
                      .++.+||.++| +|+|  ||+.+.   |.. .++.+++.+.|+.+.......
T Consensus        98 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~-~~~~~~l~~~l~~l~~~~~~~  148 (154)
T 3kcm_A           98 VGKLYGTTGVPETFVIDRHGVILKKVVGAM-EWDHPEVIAFLNNELSKAREG  148 (154)
T ss_dssp             HHHHHTCCSBCEEEEECTTSBEEEEEESCC-CTTSHHHHHHHHTC-------
T ss_pred             HHHHhCCCCCCeEEEECCCCcEEEEEcCCC-ccccHHHHHHHHHHHHHhhhc
Confidence            35677999999 5555  788753   322 356789999999988776543

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=93.05  E-value=0.041  Score=35.19  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=16.5

Q ss_pred             HhhcCCccccceEEECCEEe
Q 031378          106 FSATRGVYATPTFFVNGFSL  125 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~~~  125 (160)
                      .+++.||.++||+++||+.+
T Consensus        47 ~~~~~gv~~vPt~~i~g~~~   66 (80)
T 2k8s_A           47 EAEKAGVKSVPALVIDGAAF   66 (80)
T ss_dssp             HHHHHTCCEEEEEEETTEEE
T ss_pred             HHHHcCCCcCCEEEECCEEE
Confidence            34567999999999999964

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=93.03  E-value=0.053  Score=39.80  Aligned_cols=42  Identities=26%  Similarity=0.540  Sum_probs=30.5

Q ss_pred             hhcCCccccc-eEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          107 SATRGVYATP-TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       107 a~~~GV~GTP-TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ++.+||.++| +|+|  ||+.+.-..+..+.+++.+.|++++.+.
T Consensus       125 ~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l  169 (176)
T 3kh7_A          125 GLDLGVYGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQL  169 (176)
T ss_dssp             HHHHTCCSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred             HHHcCCCCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            5667999999 4555  6877643333556999999999988654

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=92.91  E-value=0.12  Score=38.88  Aligned_cols=44  Identities=7%  Similarity=0.264  Sum_probs=32.7

Q ss_pred             HhhcCCccccceEEE--CCEEe--c-------CCCCCCC-HHHHHHHHHHHhhhcC
Q 031378          106 FSATRGVYATPTFFV--NGFSL--A-------GAGSPLD-YNGWRKVIDPLLSEKG  149 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~--~-------ga~s~~~-~e~~~~~Id~~l~~~~  149 (160)
                      .+.+.||.+.|||++  ||+.+  .       -..+..+ .+++.++|+..+.+.+
T Consensus        87 ~a~~y~V~siPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~  142 (160)
T 2av4_A           87 FNTMYELYDPVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGAR  142 (160)
T ss_dssp             TTTTTTCCSSEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhh
Confidence            489999999999954  99987  3       2333344 8899999998874433

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=92.84  E-value=0.1  Score=33.84  Aligned_cols=30  Identities=13%  Similarity=0.366  Sum_probs=22.5

Q ss_pred             hhcC-CccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          107 SATR-GVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       107 a~~~-GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .+.. |+.++|++++||+.+.|      ++++.++++
T Consensus        47 ~~~~~~~~~vP~l~~~g~~i~g------~~~i~~~~~   77 (89)
T 2klx_A           47 VQRANGRNTFPQIFIGDYHVGG------CDDLYALEN   77 (89)
T ss_dssp             HHHHHSSCCSCEEEETTEECCS------HHHHHHHHH
T ss_pred             HHHhCCCCCcCEEEECCEEEeC------hHHHHHHHH
Confidence            3445 89999999999998753      666666544

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=92.57  E-value=0.12  Score=34.37  Aligned_cols=21  Identities=19%  Similarity=0.430  Sum_probs=17.6

Q ss_pred             hhcCCccccceEEECCEEecC
Q 031378          107 SATRGVYATPTFFVNGFSLAG  127 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~g  127 (160)
                      .+..|+.+.|++|+||+.+.|
T Consensus        61 ~~~~g~~~vP~i~~~g~~i~g   81 (105)
T 1kte_A           61 QQLTGARTVPRVFIGKECIGG   81 (105)
T ss_dssp             HHHHSCCCSCEEEETTEEEES
T ss_pred             HHHhCCCCcCeEEECCEEEec
Confidence            445699999999999999854

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=92.50  E-value=0.04  Score=40.26  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=18.6

Q ss_pred             HhhcCCccccceEEECCEEecC
Q 031378          106 FSATRGVYATPTFFVNGFSLAG  127 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~~~~g  127 (160)
                      .++..|+.++|++|+||+.+.|
T Consensus        94 L~~~~g~~tvP~ifi~G~~igG  115 (146)
T 2ht9_A           94 LYKMTGERTVPRIFVNGTFIGG  115 (146)
T ss_dssp             HHHHHSCCCSCEEEETTEEEES
T ss_pred             HHHHhCCCCcCeEEECCEEEeC
Confidence            4566799999999999999865

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.28  E-value=0.085  Score=37.16  Aligned_cols=38  Identities=21%  Similarity=0.147  Sum_probs=28.1

Q ss_pred             hcCCccccceEEE--CCEEec---CCCC----CCCHHHHHHHHHHHh
Q 031378          108 ATRGVYATPTFFV--NGFSLA---GAGS----PLDYNGWRKVIDPLL  145 (160)
Q Consensus       108 ~~~GV~GTPTffI--NG~~~~---ga~s----~~~~e~~~~~Id~~l  145 (160)
                      .++||.++||+++  ||+.+.   |..+    .++.++++++|++.-
T Consensus        74 ~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           74 EHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             SSCCSSCCSEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             ccCCCCCCCEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            6899999999988  887653   4321    236888999888773

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=92.24  E-value=0.1  Score=35.18  Aligned_cols=37  Identities=14%  Similarity=-0.009  Sum_probs=26.8

Q ss_pred             CccccceEEE--CC-EE-ecCCCCCCCHHHHHHHHHHHhhh
Q 031378          111 GVYATPTFFV--NG-FS-LAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       111 GV~GTPTffI--NG-~~-~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ||.++||+++  +| +. .....+..+.+++.++|++.+..
T Consensus        78 ~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (121)
T 2djj_A           78 EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY  118 (121)
T ss_dssp             CCSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSS
T ss_pred             ccCcCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCc
Confidence            9999999988  54 41 22334466799999999887643

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=92.06  E-value=0.15  Score=35.54  Aligned_cols=30  Identities=17%  Similarity=0.454  Sum_probs=23.5

Q ss_pred             hhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .+..|+.+.|++||||+.+-|      ++++.++.+
T Consensus        75 ~~~~g~~tvP~vfi~g~~igG------~d~l~~l~~  104 (118)
T 3c1r_A           75 YEINGQRTVPNIYINGKHIGG------NDDLQELRE  104 (118)
T ss_dssp             HHHHSCCSSCEEEETTEEEES------HHHHHHHHH
T ss_pred             HHHhCCCCcCEEEECCEEEEc------HHHHHHHHH
Confidence            455689999999999999854      677666654

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=91.95  E-value=0.12  Score=35.40  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=17.7

Q ss_pred             hhcCCccccceEEECCEEecC
Q 031378          107 SATRGVYATPTFFVNGFSLAG  127 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~g  127 (160)
                      ++..|+.++|++|+||+.+.|
T Consensus        68 ~~~~g~~~vP~v~i~g~~igg   88 (114)
T 2hze_A           68 EQITGGKTVPRIFFGKTSIGG   88 (114)
T ss_dssp             HHHHSCCSSCEEEETTEEEES
T ss_pred             HHHhCCCCcCEEEECCEEEeC
Confidence            455699999999999999854

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=91.80  E-value=0.34  Score=35.59  Aligned_cols=48  Identities=17%  Similarity=0.212  Sum_probs=35.3

Q ss_pred             HHHhhcCCccccceEEE---C-CEEecCCCCCCCHHHHHHHHHHHhhhcCCCC
Q 031378          104 FKFSATRGVYATPTFFV---N-GFSLAGAGSPLDYNGWRKVIDPLLSEKGKKR  152 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI---N-G~~~~ga~s~~~~e~~~~~Id~~l~~~~~~~  152 (160)
                      .++.+.+||.|+|++++   + |..+... ++.+.+++.+.|+..+...++.+
T Consensus        91 ~~l~~~y~v~~~P~~~fld~~~G~~l~~~-~g~~~~~fl~~L~~~l~~~~~~~  142 (153)
T 2dlx_A           91 QRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLGEHGQLD  142 (153)
T ss_dssp             HHHHHHHTCCSSSEEEEECTTTCCCCEEE-SSCCHHHHHHHHHHHHHHTCSCS
T ss_pred             HHHHHHcCCCCCCEEEEEeCCCCcEeeec-CCCCHHHHHHHHHHHHHhcCCCC
Confidence            45567889999999988   4 7544322 23679999999999997775543

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=91.48  E-value=0.2  Score=41.42  Aligned_cols=43  Identities=14%  Similarity=0.152  Sum_probs=34.0

Q ss_pred             HHhhcCCccccceEEE--CCEEec-CCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLA-GAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~-ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..+++.||+|+||+++  ||..+. ...+..+.+++.++|...+..
T Consensus        73 ~l~~~~~v~~~Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (382)
T 2r2j_A           73 DIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSD  118 (382)
T ss_dssp             HHHHHTTCCEESEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred             HHHHhcCCCcCCEEEEEeCCcEeeeeecCcchHHHHHHHHHHhccC
Confidence            4578899999999988  898653 244567799999999988743

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=91.48  E-value=0.1  Score=36.39  Aligned_cols=35  Identities=17%  Similarity=0.167  Sum_probs=27.3

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id  142 (160)
                      ..++..||.++||+++   ||+++..   ..+.++++++|+
T Consensus       104 ~~~~~~~v~~~P~~~lid~~G~i~~~---~~~~~~l~~~l~  141 (142)
T 3eur_A          104 KNKNLYDLRAIPTLYLLDKNKTVLLK---DATLQKVEQYLA  141 (142)
T ss_dssp             HHTTCSCCTTCSEEEEECTTCBEEEE---EECHHHHHHHHH
T ss_pred             hhhhhcCCCcCCeEEEECCCCcEEec---CCCHHHHHHHHh
Confidence            3578999999999887   7888754   334888888775

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=91.47  E-value=0.2  Score=35.03  Aligned_cols=45  Identities=9%  Similarity=0.200  Sum_probs=34.1

Q ss_pred             HhhcCCccc--cceEEE--C--CEEecC-CCCCCCHHHHHHHHHHHhhhcCC
Q 031378          106 FSATRGVYA--TPTFFV--N--GFSLAG-AGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       106 ~a~~~GV~G--TPTffI--N--G~~~~g-a~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      .+.++||++  .||+++  |  |+++.- ..+..+.+++.++|+..+.++=+
T Consensus        68 ~a~~~gi~~~~iPtl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gkl~  119 (133)
T 2djk_A           68 HAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIE  119 (133)
T ss_dssp             GTTTTTCCSSSSSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCC
T ss_pred             HHHHcCCCcccCCEEEEEecCcCcccCCCCccccCHHHHHHHHHHHHcCCcC
Confidence            578999999  999988  5  776531 11456699999999999876543

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=90.91  E-value=0.28  Score=34.54  Aligned_cols=43  Identities=16%  Similarity=0.221  Sum_probs=32.5

Q ss_pred             HHhhcCCccccc----------------eEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATP----------------TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTP----------------TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      +.++.+||.++|                +|+|  ||+.+.-..+..+.+++.+.|++++++
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~  162 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRP  162 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHGG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            457789999999                6666  688764333456689999999998864

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=90.82  E-value=0.23  Score=41.89  Aligned_cols=43  Identities=16%  Similarity=0.193  Sum_probs=34.0

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ..+++.||+|+||+++  ||..+....+..+.+++.+.+...+..
T Consensus        66 ~l~~~~~v~~~Ptl~~~~~g~~~~~~~G~~~~~~l~~~~~~~~~~  110 (481)
T 3f8u_A           66 NTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP  110 (481)
T ss_dssp             HHHHHTTCCEESEEEEEETTEEEEECCSCSSHHHHHHHHHHHTSC
T ss_pred             HHHHhcCCCCCCEEEEEeCCceeeeecCccCHHHHHHHHHhhccc
Confidence            4578899999999998  896544445567799999999888743

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=90.77  E-value=0.14  Score=37.41  Aligned_cols=43  Identities=19%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             HhhcCCccccceEEE---CCEEec-CCC-------CCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV---NGFSLA-GAG-------SPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~-ga~-------s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++.+||.++|+++|   ||+++. |..       +..+.+++.+.|+++++++
T Consensus       108 ~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~  161 (188)
T 2cvb_A          108 VAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE  161 (188)
T ss_dssp             HHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence            356789999998777   787754 221       1125789999999998755

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=90.73  E-value=0.2  Score=33.78  Aligned_cols=29  Identities=17%  Similarity=0.272  Sum_probs=22.6

Q ss_pred             hcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      ...|+.+.|++|+||+.+-|      ++++.++.+
T Consensus        66 ~~~g~~~vP~v~i~g~~igg------~d~~~~l~~   94 (105)
T 2yan_A           66 AYSNWPTYPQLYVKGELVGG------LDIVKELKE   94 (105)
T ss_dssp             HHHTCCSSCEEEETTEEEEC------HHHHHHHHH
T ss_pred             HHHCCCCCCeEEECCEEEeC------hHHHHHHHH
Confidence            33588999999999999864      777777644

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=90.71  E-value=0.26  Score=33.29  Aligned_cols=26  Identities=15%  Similarity=0.346  Sum_probs=21.8

Q ss_pred             CccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       111 GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      |+.+.|++||||+.+-|      ++++.++.+
T Consensus        64 g~~~vP~ifi~g~~igG------~d~l~~~~~   89 (99)
T 3qmx_A           64 GKRSLPQIFIDDQHIGG------CDDIYALDG   89 (99)
T ss_dssp             TCCCSCEEEETTEEEES------HHHHHHHHH
T ss_pred             CCCCCCEEEECCEEEeC------hHHHHHHHH
Confidence            89999999999999854      787777665

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=90.68  E-value=0.37  Score=32.29  Aligned_cols=31  Identities=13%  Similarity=0.147  Sum_probs=24.2

Q ss_pred             hcCCccccceEEECC-EEecCCCCCCCHHHHHHHHH
Q 031378          108 ATRGVYATPTFFVNG-FSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       108 ~~~GV~GTPTffING-~~~~ga~s~~~~e~~~~~Id  142 (160)
                      +..|+.+.|+++||| +.+-    +++-++|.++|+
T Consensus        71 ~~~g~~~vP~l~i~~~~~ig----g~~~~~l~~~L~  102 (103)
T 3nzn_A           71 RFNPSVSFPTTIINDEKAIV----GFKEKEIRESLG  102 (103)
T ss_dssp             HHCTTCCSCEEEETTTEEEE----SCCHHHHHHHTT
T ss_pred             HhCCCCccCEEEECCCEEEE----cCCHHHHHHHhC
Confidence            446999999999999 8774    455788887763

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=90.59  E-value=0.25  Score=37.59  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             HhhcCCccccceEEE---CCEEec-C--------CCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV---NGFSLA-G--------AGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~-g--------a~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++.+||.++|+++|   ||+++. |        ..+..+.+++++.|++++.++
T Consensus       135 ~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~  189 (218)
T 3u5r_E          135 VAKAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGK  189 (218)
T ss_dssp             HHHHHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCC
Confidence            456789999999888   788762 2        112345799999999999765

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=90.35  E-value=0.37  Score=36.11  Aligned_cols=40  Identities=8%  Similarity=0.211  Sum_probs=29.4

Q ss_pred             HHHhhcCCccccceEEE--CC----EEecCCCCCCCHHHHHHHHHHHhh
Q 031378          104 FKFSATRGVYATPTFFV--NG----FSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG----~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      -..+++.||.++||+++  ||    ..+.|..+   .+++.++++..+.
T Consensus        68 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~G~~~---~~~l~~~l~~~l~  113 (226)
T 1a8l_A           68 KELAKRYRIDRAPATTITQDGKDFGVRYFGLPA---GHEFAAFLEDIVD  113 (226)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTBCCSEEEESCCC---TTHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcCceEEEEcCCceeeEEEeccCc---HHHHHHHHHHHHh
Confidence            34578899999999999  76    34556444   6778888877664

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=90.22  E-value=0.16  Score=34.71  Aligned_cols=40  Identities=18%  Similarity=0.168  Sum_probs=27.1

Q ss_pred             HHhhcCCccccceEEE--C----CEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--N----GFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--N----G~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||.|+||+++  +    |+.+.... +..-++++++|+...
T Consensus        67 ~~~~~~~i~~~Pt~~~~~~~~~~G~~~~~~~-G~~~~~l~~~~~~~~  112 (118)
T 2f51_A           67 NAADAYGVSSIPALFFVKKEGNEIKTLDQFV-GADVSRIKADIEKFK  112 (118)
T ss_dssp             HHHHHTTCCSSSEEEEEEEETTEEEEEEEEE-SCCHHHHHHHHHHHC
T ss_pred             HHHHhcCCCCCCEEEEEeCCCCcceEEEeec-CCCHHHHHHHHHHhh
Confidence            3577899999999988  6    87753221 223466777777654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=90.22  E-value=0.39  Score=33.53  Aligned_cols=37  Identities=24%  Similarity=0.166  Sum_probs=27.3

Q ss_pred             hhcCCccccceEEE--CCEEec---CCCC----CCCHHHHHHHHHH
Q 031378          107 SATRGVYATPTFFV--NGFSLA---GAGS----PLDYNGWRKVIDP  143 (160)
Q Consensus       107 a~~~GV~GTPTffI--NG~~~~---ga~s----~~~~e~~~~~Id~  143 (160)
                      +.++||.+.|||++  ||+.+.   |..+    .++.++++.+|..
T Consensus        66 ~~~~~v~~~PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           66 IQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             STTCCGGGCSEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             HHHCCCCCCCEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            58899999999999  998764   4332    4567777766653

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=90.13  E-value=0.22  Score=35.88  Aligned_cols=41  Identities=24%  Similarity=0.300  Sum_probs=30.9

Q ss_pred             hhcCCccccc-------eEEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          107 SATRGVYATP-------TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       107 a~~~GV~GTP-------TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      .+..||.|+|       +|+|  ||+++.-..+..+.+++.+.|++++..
T Consensus       120 ~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  169 (171)
T 3cmi_A          120 SQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLKE  169 (171)
T ss_dssp             HHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHTC
T ss_pred             hccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            3568999999       6677  788764333456689999999999864

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.04  E-value=0.24  Score=34.94  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=18.4

Q ss_pred             HhhcCCccccceEEECCEEecC
Q 031378          106 FSATRGVYATPTFFVNGFSLAG  127 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~~~~g  127 (160)
                      .++..|+.++|++|+||+.+.|
T Consensus        72 l~~~~g~~~vP~l~i~G~~igg   93 (130)
T 2cq9_A           72 LYKMTGERTVPRIFVNGTFIGG   93 (130)
T ss_dssp             HHHHHSSCCSSEEEETTEEEEE
T ss_pred             HHHHhCCCCcCEEEECCEEEcC
Confidence            3556799999999999999854

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=90.03  E-value=0.13  Score=35.45  Aligned_cols=37  Identities=22%  Similarity=0.165  Sum_probs=25.6

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      .++++||.|+||+++  +|..+.|.. ..+.+.++++|++
T Consensus        84 ~~~~~~i~~~Pt~~~~~~~~~~~g~~-~~~~~~l~~~i~~  122 (123)
T 1wou_A           84 FRKNLKVTAVPTLLKYGTPQKLVESE-CLQANLVEMLFSE  122 (123)
T ss_dssp             HHHHHCCCSSSEEEETTSSCEEEGGG-GGCHHHHHHHHHC
T ss_pred             HHHHCCCCeeCEEEEEcCCceEeccc-cCCHHHHHHHHhc
Confidence            455689999999999  566665543 2446777777653

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=89.91  E-value=0.32  Score=33.02  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=22.2

Q ss_pred             hcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      +..|+.+.|++||||+.+-|      ++++.++.+
T Consensus        67 ~~~g~~tvP~ifi~g~~igG------~~~~~~~~~   95 (113)
T 3rhb_A           67 RLTGQHTVPNVFVCGKHIGG------CTDTVKLNR   95 (113)
T ss_dssp             HHHSCCSSCEEEETTEEEES------HHHHHHHHH
T ss_pred             HHhCCCCcCEEEECCEEEcC------cHHHHHHHH
Confidence            34588999999999999864      676665543

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=89.62  E-value=0.25  Score=32.04  Aligned_cols=29  Identities=14%  Similarity=0.320  Sum_probs=21.2

Q ss_pred             hhcCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378          107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I  141 (160)
                      .+..|+.++|++++||+.+.|      ++++.+++
T Consensus        49 ~~~~~~~~vP~l~~~g~~i~g------~~~i~~~~   77 (92)
T 2khp_A           49 QERSGRNTFPQIFIGSVHVGG------CDDLYALE   77 (92)
T ss_dssp             HHHHTSSCCCEEEETTEEEES------HHHHHHHH
T ss_pred             HHHhCCCCcCEEEECCEEEcC------HHHHHHHH
Confidence            344589999999999998854      55555543

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=89.56  E-value=0.23  Score=35.27  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=30.7

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .++.+||.++|++++   ||+.+.-..+   ..+|.+.+..++.+-
T Consensus       105 ~~~~~~v~~~P~~~lid~~G~i~~~~~g---~~~~e~~~~~~~~~~  147 (152)
T 2lrt_A          105 YISLYNVTNLPSVFLVNRNNELSARGEN---IKDLDEAIKKLLEGH  147 (152)
T ss_dssp             HHHHHTCCSCSEEEEEETTTEEEEETTT---CSCHHHHHHHHHGGG
T ss_pred             HHHHcCcccCceEEEECCCCeEEEecCC---HHHHHHHHHHHHhcc
Confidence            356678999999887   8998765334   788888888887665

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=89.47  E-value=0.32  Score=40.08  Aligned_cols=41  Identities=7%  Similarity=0.124  Sum_probs=33.3

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+++.||+|.||+++  ||++. ...+..+.+++.+.|...+.
T Consensus        82 ~l~~~~~V~~~PTl~~f~~G~~~-~y~G~~~~~~i~~~i~~~~~  124 (367)
T 3us3_A           82 AVAKKLGLTEEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDVLE  124 (367)
T ss_dssp             HHHHHHTCCSTTEEEEEETTEEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             HHHHHcCCCcCceEEEEECCcEE-EeCCCCCHHHHHHHHHHhcC
Confidence            4578899999999988  99876 34557779999999988764

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=89.39  E-value=0.31  Score=40.59  Aligned_cols=44  Identities=16%  Similarity=0.041  Sum_probs=32.6

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      .++.+||.++|+++|   ||+++.-..+..+.+++.+.|++++....
T Consensus       156 l~~~ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~e~~  202 (352)
T 2hyx_A          156 TWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLNDAK  202 (352)
T ss_dssp             HHHHTTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHcCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHhhcc
Confidence            356789999999665   78876432334559999999999986553

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=89.32  E-value=0.46  Score=38.48  Aligned_cols=42  Identities=19%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             HHHHhhcCCcccc--ceEEECCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          103 SFKFSATRGVYAT--PTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       103 ~~k~a~~~GV~GT--PTffING~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ...++++.|.++.  |++||||+...+   +.+.++|.+.|.+....
T Consensus       101 ~~~~~~~~G~~tVyTPqI~Ing~~~v~---G~d~~~l~~~l~~~~~~  144 (270)
T 2axo_A          101 QYGYMRALGRNGVYTPQAILNGRDHVK---GADVRGIYDRLDAFKRE  144 (270)
T ss_dssp             HHHHHHHTTCSCCCSSEEEETTTEEEE---TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcccCCEEEECCEEeec---CCCHHHHHHHHHHhhcc
Confidence            4457888898866  999999995323   33478888888776544

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=89.03  E-value=0.25  Score=34.34  Aligned_cols=35  Identities=9%  Similarity=0.142  Sum_probs=25.5

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      .++.+||.++|++++   ||+.+.-   ..+.+++.+.|++
T Consensus       105 ~~~~~~v~~~P~~~lid~~G~i~~~---~~~~~~l~~~l~~  142 (143)
T 4fo5_A          105 LYKKYDLRKGFKNFLINDEGVIIAA---NVTPEKLTEILKA  142 (143)
T ss_dssp             HHHHTTGGGCCCEEEECTTSBEEEE---SCCHHHHHHHHTC
T ss_pred             HHHHcCCCCCCcEEEECCCCEEEEc---cCCHHHHHHHHHh
Confidence            467789999997666   6888754   3347888887754

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=88.61  E-value=0.43  Score=35.14  Aligned_cols=42  Identities=19%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             hhcCCccccc-------eEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          107 SATRGVYATP-------TFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       107 a~~~GV~GTP-------TffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ....||.|+|       +|+|  ||+++.-..+..+.+++.+.|+++++..
T Consensus       137 ~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~  187 (190)
T 2vup_A          137 KTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLEST  187 (190)
T ss_dssp             HHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHHCC
T ss_pred             hhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhhc
Confidence            3557999999       6666  6887653334556899999999998754

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=88.51  E-value=0.52  Score=33.46  Aligned_cols=45  Identities=11%  Similarity=0.141  Sum_probs=33.1

Q ss_pred             HHhhcCCccccc---------------e-EEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          105 KFSATRGVYATP---------------T-FFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       105 k~a~~~GV~GTP---------------T-ffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      +.++.+||.++|               + |+|  +|+.+.-..+..+.+++.+.|++++...+
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~  167 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFR  167 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            346778999988               4 666  68876433345669999999999997653

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=88.09  E-value=0.43  Score=34.57  Aligned_cols=38  Identities=18%  Similarity=0.061  Sum_probs=28.5

Q ss_pred             CCccccce-EEE--CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          110 RGVYATPT-FFV--NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       110 ~GV~GTPT-ffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      .+|.++|+ |+|  +|+++....+..+.+++.+.|+.++.+
T Consensus       142 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~  182 (183)
T 3lwa_A          142 VPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVDE  182 (183)
T ss_dssp             CCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHHC
T ss_pred             CCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhc
Confidence            57999995 555  688764334456799999999998864

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=88.04  E-value=0.36  Score=41.10  Aligned_cols=42  Identities=7%  Similarity=0.021  Sum_probs=32.4

Q ss_pred             HHhhcCCccccceEEE--CCEE--ecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFS--LAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~--~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+++.||+|+||+++  ||..  .....+..+.+++.+.+...+.
T Consensus        77 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~  122 (504)
T 2b5e_A           77 DLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ  122 (504)
T ss_dssp             HHHHHTTCCSSSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred             HHHHhcCCCcCCEEEEEeCCccccceeecCCCCHHHHHHHHHHhcC
Confidence            4688999999999988  8874  2233446779999999988774

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=87.61  E-value=0.75  Score=34.58  Aligned_cols=40  Identities=15%  Similarity=0.230  Sum_probs=29.1

Q ss_pred             HHHhhcCCccccceEEE--CC---EEecCCCCCCCHHHHHHHHHHHhh
Q 031378          104 FKFSATRGVYATPTFFV--NG---FSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG---~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      -..+++.||+|+||+++  ||   ..+.|..+   .+++.+++...+.
T Consensus        71 ~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G~~~---~~~l~~~~~~~~~  115 (229)
T 2ywm_A           71 KEETEKYGVDRVPTIVIEGDKDYGIRYIGLPA---GLEFTTLINGIFH  115 (229)
T ss_dssp             HHHHHHTTCCBSSEEEEESSSCCCEEEESCCC---TTHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcCcEEEEECCCcccceecCCcc---HHHHHHHHHHHHh
Confidence            34588999999999999  33   44556544   7778888777664

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=87.12  E-value=1.2  Score=29.78  Aligned_cols=37  Identities=14%  Similarity=0.147  Sum_probs=27.9

Q ss_pred             hcCCccccceEEE-CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          108 ATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       108 ~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      ...|..+.|++|| ||..+.    .++.+++.+.++++..-.
T Consensus        49 ~~~G~~tVP~I~i~Dg~~l~----~~~~~el~~~L~el~gL~   86 (92)
T 2lqo_A           49 VNGGNRTVPTVKFADGSTLT----NPSADEVKAKLVKIAGLE   86 (92)
T ss_dssp             HSSSSSCSCEEEETTSCEEE----SCCHHHHHHHHHHHHCCS
T ss_pred             HcCCCCEeCEEEEeCCEEEe----CCCHHHHHHHHHHhcCCc
Confidence            3458889999999 677775    345799999888876533

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=86.88  E-value=0.5  Score=33.41  Aligned_cols=30  Identities=17%  Similarity=0.399  Sum_probs=23.1

Q ss_pred             hhcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          107 SATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       107 a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .+..|+.+.|++||||+.+-|      ++++.++.+
T Consensus        87 ~~~~g~~tVP~vfi~g~~igG------~d~l~~l~~  116 (129)
T 3ctg_A           87 EEISGQKTVPNVYINGKHIGG------NSDLETLKK  116 (129)
T ss_dssp             HHHHSCCSSCEEEETTEEEES------HHHHHHHHH
T ss_pred             HHHhCCCCCCEEEECCEEEcC------HHHHHHHHH
Confidence            344588999999999999854      777776644

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=86.63  E-value=1.2  Score=34.01  Aligned_cols=43  Identities=14%  Similarity=0.100  Sum_probs=32.3

Q ss_pred             HHhhcCCccccceEEE--C------CEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          105 KFSATRGVYATPTFFV--N------GFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--N------G~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      ..+++.||+|+||+++  +      |..+. . .+.+.+++.+.|.+.+....
T Consensus        80 ~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~~-~-~g~~~~~l~~~i~~~l~~~~  130 (244)
T 3q6o_A           80 AVCRDFNIPGFPTVRFFXAFTXNGSGAVFP-V-AGADVQTLRERLIDALESHH  130 (244)
T ss_dssp             HHHHHTTCCSSSEEEEECTTCCSSSCEECC-C-TTCCHHHHHHHHHHHHHTCT
T ss_pred             HHHHHcCCCccCEEEEEeCCCcCCCCeeEe-c-CCCCHHHHHHHHHHHHHhcc
Confidence            4578899999999988  4      34332 2 23579999999999997654

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=85.94  E-value=0.78  Score=31.37  Aligned_cols=29  Identities=17%  Similarity=0.271  Sum_probs=22.0

Q ss_pred             hcCCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      +..|..+.|++||||+.+-|      ++++.++-+
T Consensus        64 ~~~g~~tvP~vfi~g~~igG------~d~l~~l~~   92 (114)
T 3h8q_A           64 EITNQKTVPNIFVNKVHVGG------CDQTFQAYQ   92 (114)
T ss_dssp             HHHSCCSSCEEEETTEEEES------HHHHHHHHH
T ss_pred             HHhCCCccCEEEECCEEEeC------HHHHHHHHH
Confidence            34578999999999999854      676666543

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=85.46  E-value=0.39  Score=39.01  Aligned_cols=41  Identities=10%  Similarity=0.153  Sum_probs=31.4

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+++.||.|+||+++  ||+.. ...+..+.+++.+.+...+.
T Consensus        80 ~l~~~~~v~~~Pt~~~~~~g~~~-~~~G~~~~~~l~~~i~~~~~  122 (350)
T 1sji_A           80 KLAKKLGFDEEGSLYVLKGDRTI-EFDGEFAADVLVEFLLDLIE  122 (350)
T ss_dssp             HHHHHHTCCSTTEEEEEETTEEE-EECSCCCHHHHHHHHHTTSS
T ss_pred             HHHHhcCCCccceEEEEECCcEE-EecCCCCHHHHHHHHHHhcC
Confidence            3578889999999988  89864 23346679999998877653

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=85.09  E-value=0.38  Score=33.43  Aligned_cols=32  Identities=13%  Similarity=0.008  Sum_probs=23.4

Q ss_pred             hhcCCccccceE--EECCEEecCCCCCCCHHHHHHHH
Q 031378          107 SATRGVYATPTF--FVNGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       107 a~~~GV~GTPTf--fING~~~~ga~s~~~~e~~~~~I  141 (160)
                      +.+.|++ +|++  |+||+.+..  +.++.++++++|
T Consensus        73 ~~~ygv~-VP~l~~~~dG~~v~~--g~~~~~~L~~~L  106 (107)
T 2fgx_A           73 TRLYNDR-VPVLFAVNEDKELCH--YFLDSDVIGAYL  106 (107)
T ss_dssp             HHHSTTS-CSEEEETTTTEEEEC--SSCCCHHHHHHH
T ss_pred             HHHhCCC-CceEEEEECCEEEEe--cCCCHHHHHHHh
Confidence            4457887 9999  789998731  246678887766

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=85.04  E-value=0.44  Score=36.73  Aligned_cols=38  Identities=13%  Similarity=0.036  Sum_probs=25.3

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCC-------CCHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSP-------LDYNGWRKVIDP  143 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~-------~~~e~~~~~Id~  143 (160)
                      .+.+++|.++||+++  ||..+....+.       ++.+++.++|..
T Consensus       164 l~~~~~i~~~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~  210 (217)
T 2trc_P          164 AGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNE  210 (217)
T ss_dssp             CSTTSCGGGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHT
T ss_pred             HHHHCCCCCCCEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHH
Confidence            567899999999888  99876322221       223666666654

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=84.44  E-value=0.71  Score=37.04  Aligned_cols=42  Identities=12%  Similarity=-0.058  Sum_probs=30.7

Q ss_pred             HHHhhcCCccccceEEE--CCE-----------------EecCCCCCCCHHHHHHHHHHHh
Q 031378          104 FKFSATRGVYATPTFFV--NGF-----------------SLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG~-----------------~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      -..++++||.|+||+++  +|.                 ......+..+.+++.+++...+
T Consensus        81 ~~l~~~~~I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~  141 (298)
T 3ed3_A           81 KALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI  141 (298)
T ss_dssp             HHHHHHTTCCBSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred             HHHHHhCCCCccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence            34578899999999998  775                 1122334667999999988776

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=83.67  E-value=0.83  Score=39.39  Aligned_cols=38  Identities=21%  Similarity=0.278  Sum_probs=29.4

Q ss_pred             HHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      ..+.+.||.++||+++||+.+..  +..+.+++.+.++..
T Consensus       161 ~~~~~~~i~svPt~~i~g~~~~~--G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          161 NEITERNVMGVPAVFVNGKEFGQ--GRMTLTEIVAKVDTG  198 (521)
T ss_dssp             HHHHHTTCCSSSEEEETTEEEEE--SCCCHHHHHHHHCCS
T ss_pred             HHHHHhCCCccCEEEECCEEEec--CCCCHHHHHHHHhhc
Confidence            35788899999999999988732  344588888887664

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=83.51  E-value=0.67  Score=32.70  Aligned_cols=37  Identities=16%  Similarity=0.065  Sum_probs=25.7

Q ss_pred             ccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378          112 VYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       112 V~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      |.++|+.+|   ||+++.-..+..+.+++.+.|++++++|
T Consensus       130 i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~k  169 (169)
T 2v1m_A          130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEKK  169 (169)
T ss_dssp             CCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHHCC
T ss_pred             ccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhccC
Confidence            555675555   7888643334556899999999998754

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=83.12  E-value=1.3  Score=32.01  Aligned_cols=42  Identities=5%  Similarity=-0.118  Sum_probs=29.7

Q ss_pred             hhcCCc--cccceEEE---CCEEecCCCC----------CCCHHHHHHHHHHHhhhc
Q 031378          107 SATRGV--YATPTFFV---NGFSLAGAGS----------PLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus       107 a~~~GV--~GTPTffI---NG~~~~ga~s----------~~~~e~~~~~Id~~l~~~  148 (160)
                      +...++  .++||+++   ||+.+.-..+          ..+.+++.+.|++++...
T Consensus        94 ~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~  150 (164)
T 1sen_A           94 DEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL  150 (164)
T ss_dssp             CGGGCTTCSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHhcccCCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence            344566  66999976   7887643333          367899999999988544

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=82.94  E-value=1  Score=35.38  Aligned_cols=41  Identities=10%  Similarity=0.154  Sum_probs=30.2

Q ss_pred             HHhhcCCcc--ccceEEE--CCE--EecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVY--ATPTFFV--NGF--SLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~--GTPTffI--NG~--~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++.||+  |.||+++  ||.  ......+..+.+++.++|+...
T Consensus        72 ~l~~~~~V~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           72 ELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             HHHHHTTCCGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            357889999  9999998  887  1222334566999999998763

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=82.77  E-value=0.69  Score=34.69  Aligned_cols=36  Identities=8%  Similarity=0.087  Sum_probs=23.2

Q ss_pred             CCccccceEEE---CCEEecCC-----CCCCCHHHHHHHHHHHh
Q 031378          110 RGVYATPTFFV---NGFSLAGA-----GSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       110 ~GV~GTPTffI---NG~~~~ga-----~s~~~~e~~~~~Id~~l  145 (160)
                      .||.|+||+++   +|+++.+.     .+.++.++|.++|+...
T Consensus       100 ~gv~g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~  143 (173)
T 3ira_A          100 LGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIK  143 (173)
T ss_dssp             HSCCCSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHH
T ss_pred             cCCCCCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHH
Confidence            49999999988   78887541     11234455666665543

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=81.89  E-value=1.3  Score=28.98  Aligned_cols=25  Identities=8%  Similarity=0.191  Sum_probs=20.4

Q ss_pred             ccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          112 VYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       112 V~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      ....|.+||||+.+-|      ++++.++.+
T Consensus        58 ~~~vP~ifi~g~~igG------~d~l~~l~~   82 (93)
T 1t1v_A           58 KATPPQIVNGNHYCGD------YELFVEAVE   82 (93)
T ss_dssp             TCCSCEEEETTEEEEE------HHHHHHHHH
T ss_pred             CCCCCEEEECCEEEeC------HHHHHHHHh
Confidence            7899999999998854      788777654

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=81.82  E-value=0.99  Score=30.53  Aligned_cols=27  Identities=19%  Similarity=0.297  Sum_probs=21.0

Q ss_pred             CCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       110 ~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .|..+.|++||||+.+-|      ++++.++.+
T Consensus        66 ~g~~~vP~ifi~g~~igG------~d~l~~l~~   92 (109)
T 1wik_A           66 SNWPTYPQLYVRGDLVGG------LDIVKELKD   92 (109)
T ss_dssp             HSCCSSCEEECSSSEEEC------HHHHHHHHH
T ss_pred             hCCCCCCEEEECCEEEcC------HHHHHHHHH
Confidence            478899999999998854      676666544

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=81.74  E-value=1  Score=32.84  Aligned_cols=44  Identities=18%  Similarity=0.108  Sum_probs=31.2

Q ss_pred             HhhcCCcc------ccceEEE---CCEEec---CCC-CCCCHHHHHHHHHHHhhhcC
Q 031378          106 FSATRGVY------ATPTFFV---NGFSLA---GAG-SPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       106 ~a~~~GV~------GTPTffI---NG~~~~---ga~-s~~~~e~~~~~Id~~l~~~~  149 (160)
                      .++.+||.      ++|+++|   ||+.+.   |.. ...+.+++.+.|+.+.....
T Consensus       104 ~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~  160 (187)
T 1we0_A          104 ISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRE  160 (187)
T ss_dssp             HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhhhh
Confidence            35667888      9999888   788764   211 12368999999999886543

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=81.25  E-value=1.3  Score=35.96  Aligned_cols=28  Identities=11%  Similarity=0.075  Sum_probs=23.2

Q ss_pred             hhHHHHHHHHHHHhhcCC-ccccceEEEC
Q 031378           94 RSTDLLTRVSFKFSATRG-VYATPTFFVN  121 (160)
Q Consensus        94 ~~~~~~i~~~~k~a~~~G-V~GTPTffIN  121 (160)
                      ....+++....+..++.| |+||||++.-
T Consensus       235 ~d~~~~v~~~~~~~~~~G~i~gtP~ii~~  263 (273)
T 3tdg_A          235 EDLRTKVENTTKKIFESGVIKGVPFLYHY  263 (273)
T ss_dssp             HHHHHHHHHHHHHHHSSSSSCSSSEEEEC
T ss_pred             hHHHHHHHHHHHHHHHcCCcccCcEEEec
Confidence            334557888899999999 9999999983

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=81.08  E-value=1.9  Score=37.64  Aligned_cols=45  Identities=13%  Similarity=0.070  Sum_probs=32.2

Q ss_pred             HHhhcCCccccceEEE--C----CEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          105 KFSATRGVYATPTFFV--N----GFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--N----G~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      ..+++.||.|+||+++  +    |.......++.+.+++.+.|++.+....
T Consensus        80 ~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           80 AVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR  130 (519)
T ss_dssp             HHHHHTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence            4578899999999998  3    2211112235679999999999997653

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=80.42  E-value=1.9  Score=29.27  Aligned_cols=26  Identities=12%  Similarity=0.189  Sum_probs=20.3

Q ss_pred             CccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       111 GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      |....|.+||||+.+-|      ++++.++.+
T Consensus        70 g~~tvP~ifi~g~~iGG------~d~l~~l~~   95 (109)
T 3ipz_A           70 NWPTFPQLYIGGEFFGG------CDITLEAFK   95 (109)
T ss_dssp             TCSSSCEEEETTEEEEC------HHHHHHHHH
T ss_pred             CCCCCCeEEECCEEEeC------HHHHHHHHH
Confidence            77899999999999854      676665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1beda_	181	c.47.1.13 (A:) Disulfide-bond formation facilitato	4e-06
d1z6ma1	172	c.47.1.13 (A:1-172) Hypothetical protein EF0770 {E	3e-04

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} Length = 181

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK 148
           G+   P   VN   L    S    + +  +++ LL+ K
Sbjct: 144 GLTGVPAVVVNNRYLVQGQSVKSLDEYFDLVNYLLTLK 181

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 4/32 (12%), Positives = 10/32 (31%), Gaps = 3/32 (9%)

Query: 111 GVYATPTFFVNGFSLAGAGSPLDYNGWRKVID 142
            +   PT  +  +    +   +     R  I+
Sbjct: 143 HIQFVPTIIIGEYIFDES---VTEEELRGYIE 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	99.41
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	99.21
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	99.12
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	99.03
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.84
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	98.75
d1r4wa_	221	Mitochondrial class kappa glutathione S-transferas	98.46
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.25
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.05
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	97.03
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	96.99
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	96.97
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.93
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	96.9
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	96.89
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	96.74
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	96.73
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	96.66
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.45
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	96.42
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	96.39
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.25
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	96.1
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	95.81
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.74
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	95.68
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	95.57
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	95.34
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	95.28
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	95.27
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	95.02
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	94.96
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	94.88
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	94.69
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	93.86
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	93.66
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	93.47
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	93.36
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	93.34
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	92.42
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	92.3
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	92.06
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	91.7
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	91.55
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	91.05
d1wjka_	100	Thioredoxin-like structure containing protein C330	91.01
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	90.63
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	89.53
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	88.71
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	87.72
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	87.34
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	86.17
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	85.14
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	82.43
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	81.72

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=99.41  E-value=8.6e-13  Score=97.02  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=66.5

Q ss_pred             HHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhhhc
Q 031378           70 EIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLSEK  148 (160)
Q Consensus        70 ~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~~~  148 (160)
                      .+...+.+ .|+| .++|.+|++++++.+.++.+.+.+++.||+|||||+|||+.+.+..+..++++|.++|+.++..|
T Consensus       105 ~l~~~~~~-~gvd-~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~InGk~~v~~~~~~~~~~l~~~i~~L~~~~  181 (181)
T d1beda_         105 ELRQIFLD-EGID-AAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVVNNRYLVQGQSVKSLDEYFDLVNYLLTLK  181 (181)
T ss_dssp             HHHHHHHT-TTCC-HHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEETTTEEECGGGCCSHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHH-hcCC-HHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEECCEEeeCCCCCCCHHHHHHHHHHHHhCc
Confidence            35555555 5999 59999999999999999999999999999999999999997656556677999999999988754

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=4e-11  Score=88.82  Aligned_cols=74  Identities=15%  Similarity=0.153  Sum_probs=57.3

Q ss_pred             HHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecC--CCCCCC----HHHHHHHHHHH
Q 031378           71 IVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAG--AGSPLD----YNGWRKVIDPL  144 (160)
Q Consensus        71 la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~g--a~s~~~----~e~~~~~Id~~  144 (160)
                      +...+.. .|+| .++|++|++++++.+.++.+.+.+.+.||+|||||+|||+.+-.  ..++..    .+++.++|+.+
T Consensus       108 ~~~~~~~-~g~d-~~~~~~~~~~~~~~~~v~~~~~~a~~~gI~gTPt~vInGky~i~~~~~~~~~~~~~~~~~~~~v~~l  185 (188)
T d1fvka_         108 IRDVFIN-AGIK-GEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYL  185 (188)
T ss_dssp             HHHHHHH-TTCC-HHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECGGGSCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-ccCC-HHHHHhhhccHHHHHHHHHHHHHHHHcCCccccEEEECCEEEecccccccchHHHHHHHHHHHHHHH
Confidence            4444444 4999 59999999999999999999999999999999999999974332  122222    46777777777


Q ss_pred             hh
Q 031378          145 LS  146 (160)
Q Consensus       145 l~  146 (160)
                      ++
T Consensus       186 ~~  187 (188)
T d1fvka_         186 SE  187 (188)
T ss_dssp             HT
T ss_pred             Hc
Confidence            65

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=6.3e-11  Score=90.63  Aligned_cols=78  Identities=17%  Similarity=0.208  Sum_probs=60.2

Q ss_pred             HHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCC--CC----HHHHHHHHHH
Q 031378           70 EIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSP--LD----YNGWRKVIDP  143 (160)
Q Consensus        70 ~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~--~~----~e~~~~~Id~  143 (160)
                      .|.+.+.+. |+| .++|++++++..+..+++.+.+.++++||+|||||+|||+..-+..+-  .+    .+++.++++-
T Consensus         8 ~i~~~~~~~-Gld-~~~f~~~~~s~~~~~~v~~~~~~a~~~gi~GtPtfiVnGky~v~~~~~~~~~~~~~~~~~~~~~~~   85 (195)
T d1un2a_           8 DIRDVFINA-GIK-GEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKY   85 (195)
T ss_dssp             HHHHHHHHH-TCC-HHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECGGGSCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCC-HHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCCEEEECCeeeeccccccccchhhhHHHHHHHHHH
Confidence            355555553 999 599999999999999999999999999999999999999976554331  22    3577777777


Q ss_pred             HhhhcC
Q 031378          144 LLSEKG  149 (160)
Q Consensus       144 ~l~~~~  149 (160)
                      ++.++.
T Consensus        86 L~~k~~   91 (195)
T d1un2a_          86 LSEKKG   91 (195)
T ss_dssp             HTC---
T ss_pred             HHhCcc
Confidence            775543

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.03  E-value=9.4e-11  Score=85.58  Aligned_cols=51  Identities=12%  Similarity=0.237  Sum_probs=44.8

Q ss_pred             ccCChhHHHHHHHHHHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHH
Q 031378           90 GFSDRSTDLLTRVSFKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus        90 ~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      ++++......++.+.+.+++.||+|||||+|||+.++|   .++.++|.++||+
T Consensus       122 ~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~Ing~~~~g---~~~~~~~~~~id~  172 (172)
T d1z6ma1         122 GLKEQKDATLVSAVIAEANAAHIQFVPTIIIGEYIFDE---SVTEEELRGYIEK  172 (172)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTCCSSCEEEETTEEECT---TCCHHHHHHHHTC
T ss_pred             hhhhHHHHHHHHHHHHHHHHcCCCcCCEEEECCEEecC---CCCHHHHHHHHcC
Confidence            56677778888889999999999999999999999988   5559999999973

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=4e-10  Score=82.59  Aligned_cols=56  Identities=18%  Similarity=0.240  Sum_probs=46.8

Q ss_pred             cCChhHHHHHHHHHHHhhcCCccccceEEE-CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378           91 FSDRSTDLLTRVSFKFSATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus        91 l~~~~~~~~i~~~~k~a~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      +.+...+..+..+.+.|+++||+||||||+ ||+.++|+.+   .++|+++|++.+++..
T Consensus        98 ~~~~~~~~~i~~~~~la~~lgv~GTPt~~~~nG~~v~G~~~---~e~l~~~i~~~~k~~~  154 (156)
T d1eeja1          98 VAPASCDVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQP---PKEMKEFLDEHQKMTS  154 (156)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHTCCSSSEEECTTSCEEESCCC---HHHHHHHHHHHHHHHH
T ss_pred             cchhhhcchHHHHHHHHHHcCCcCCCEEEEeCCeEecCCCC---HHHHHHHHHHHHHHhc
Confidence            344445556778889999999999999888 9999999777   9999999999986653

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.75  E-value=1.1e-09  Score=79.87  Aligned_cols=53  Identities=13%  Similarity=0.171  Sum_probs=45.8

Q ss_pred             cccCChhHHHHHHHHHHHhhcCCccccceEEE-CCEEecCCCCCCCHHHHHHHHHHH
Q 031378           89 SGFSDRSTDLLTRVSFKFSATRGVYATPTFFV-NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus        89 ~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffI-NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      ....+......++.+.+.|+++||+||||||+ ||+.++|+.+   .++|+++|++.
T Consensus        96 ~~~~~~~~~~~i~~~~~la~~lGv~GTPt~~~~nG~~i~G~~~---~~~l~~~l~~~  149 (150)
T d1t3ba1          96 NLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTSTGELIGGYLK---PADLLRALEET  149 (150)
T ss_dssp             CCCSSCCCSSHHHHHHHHHHHHTCCSSCEEECTTSCCCCSCCC---HHHHHHHHHHC
T ss_pred             ccccchhhhhHHHHHHHHHHhcCcCCCCEEEEcCCcEecCCCC---HHHHHHHHHhh
Confidence            44566667778889999999999999999888 9999999777   99999999864

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=9.4e-07  Score=65.60  Aligned_cols=87  Identities=15%  Similarity=0.194  Sum_probs=61.9

Q ss_pred             chhhhhcCCCCCCChHHHHHHHHHHHHhhcCCChhHHHHc---ccCChhHHHHHHHHHHHhhcCCccccceEEECC----
Q 031378           50 QQEKFYNAPTQNMTRTAVVKEIVKFAAEGIGNSYSSALES---GFSDRSTDLLTRVSFKFSATRGVYATPTFFVNG----  122 (160)
Q Consensus        50 ~Q~~f~~~~~~~~t~~~i~~~la~~A~~~~Gld~~~~f~~---~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING----  122 (160)
                      -...||.. +.+.+..+++..++..    +|++ .+++++   ..++++..+.++.+.+.|.+.||.|.|||+|||    
T Consensus       120 l~~a~~~~-g~di~d~~~l~~~a~~----~gl~-~~~~~~~~~~~~~~~~k~~l~~~~~~A~~~GvfGvPtfvi~~~~~~  193 (221)
T d1r4wa_         120 LWMRIWSR-DEDITESQNILSAAEK----AGMA-TAQAQHLLNKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDGKT  193 (221)
T ss_dssp             HHHHHHTS-CCCCSSHHHHHHHHHH----TTCC-HHHHHHHHTTTTSHHHHHHHHHHHHHHHHTTCCSSCEEEEEETTEE
T ss_pred             HHHHHhcc-CCcccchHHHHHHHHH----hCcc-ccccccccccccCHHHHHHHHHHHHHHHHCCCeECCEEEEccCCCc
Confidence            46667766 6677777776666655    4998 466554   467888889999999999999999999999984    


Q ss_pred             EEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          123 FSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       123 ~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      .++=|      -+.+. +|+..|.+.+
T Consensus       194 e~f~G------~Drl~-~l~~~L~~~~  213 (221)
T d1r4wa_         194 YMLFG------SDRME-LLAYLLGEKW  213 (221)
T ss_dssp             EEEES------TTCHH-HHHHHHTCCC
T ss_pred             ceeec------ccCHH-HHHHHHhccc
Confidence            34434      44443 4555665554

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=1.8e-06  Score=63.30  Aligned_cols=55  Identities=9%  Similarity=0.022  Sum_probs=43.8

Q ss_pred             HHHHcccCChhHHHHHHHHHHHhhcCCccccceEEECC-----EEecCCCCCCCHHHHHHHHH
Q 031378           85 SALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFVNG-----FSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus        85 ~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffING-----~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .....+..+.+....+..+.++++++||+|||||||++     +.+.|+.+   .++|.+++.
T Consensus       109 ~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~---~~~l~~il~  168 (169)
T d1v58a1         109 KLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPD---QKTLNIIMG  168 (169)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCC---HHHHHHHTT
T ss_pred             cccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCC---HHHHHHHhc
Confidence            33445667777888899999999999999999999944     56888777   888888763

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.05  E-value=0.00017  Score=46.39  Aligned_cols=38  Identities=18%  Similarity=0.307  Sum_probs=31.2

Q ss_pred             HHhhcCCccccceEEECCEE-ecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFVNGFS-LAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~-~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..+.+.||.|+||+++||+. +.|   ..+.+++.+.|++.|
T Consensus        46 ~l~~~~~V~~~Pt~~~~~~~~~~G---~~~~~~l~~~i~~~l   84 (85)
T d1nhoa_          46 EKAIEYGLMAVPAIAINGVVRFVG---APSREELFEAINDEM   84 (85)
T ss_dssp             GGGGGTCSSCSSEEEETTTEEEEC---SSCCHHHHHHHHHHC
T ss_pred             hhHHhcCceEeCEEEECCcEEEEc---CCCHHHHHHHHHHhh
Confidence            46899999999999998875 335   445999999999876

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00023  Score=47.34  Aligned_cols=42  Identities=21%  Similarity=0.301  Sum_probs=33.7

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+.++||.|+||+++  ||+.+....+..+.+++.++|++.|+
T Consensus        65 ~l~~~~~v~~~PT~~~~~~G~~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             THHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             hHHHHhCCCcEEEEEEEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            3577899999999988  99986544445669999999998774

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.99  E-value=0.00033  Score=46.23  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=27.9

Q ss_pred             HHhhcCCccccceEEECCEEec-CCCCCCCHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFVNGFSLA-GAGSPLDYNGWRKVID  142 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~~~-ga~s~~~~e~~~~~Id  142 (160)
                      ..+.+.||.|+||+++||+.+. |.   .+.+++.+.|+
T Consensus        59 ~l~~~~~I~~vPt~~~ng~~~~~G~---~~~~~l~~~le   94 (96)
T d1hyua4          59 NEITERNVMGVPAVFVNGKEFGQGR---MTLTEIVAKVD   94 (96)
T ss_dssp             HHHHHTTCCSSSEEEETTEEEEESC---CCHHHHHHHHC
T ss_pred             HHHhhcccccccEEEECCEEEEecC---CCHHHHHHHHh
Confidence            4567889999999999999873 43   44888888775

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.97  E-value=0.00016  Score=46.22  Aligned_cols=37  Identities=27%  Similarity=0.342  Sum_probs=28.2

Q ss_pred             HhhcCCccccceEEECCEE-ecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFVNGFS-LAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffING~~-~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+++.||.|+||+++++.- +.|.   .+.+++.+.|++.|
T Consensus        48 la~~~~V~~~Pt~~i~~~g~~~G~---~~~~~l~~~i~~~L   85 (85)
T d1fo5a_          48 KAMEYGIMAVPTIVINGDVEFIGA---PTKEALVEAIKKRL   85 (85)
T ss_dssp             TTTSTTTCCSSEEEETTEEECCSS---SSSHHHHHHHHHHC
T ss_pred             ccccCCceEeeEEEEECCcEEECC---CCHHHHHHHHHhcC
Confidence            4789999999999995442 3354   45899999998764

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.93  E-value=0.00035  Score=46.30  Aligned_cols=42  Identities=17%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+++.||.|+||+++  ||+.+....+..+.+++.+.|.++|.
T Consensus        64 ~l~~~~~V~~vPTi~i~~~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          64 EWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             HHHHHTTCCSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ccccccccccceEEEEEeCCeEEEEEECCCCHHHHHHHHHHhhC
Confidence            3578899999999988  78775433345559999999998763

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00059  Score=47.85  Aligned_cols=48  Identities=15%  Similarity=0.148  Sum_probs=39.7

Q ss_pred             HHHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhhhcCC
Q 031378          103 SFKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLSEKGK  150 (160)
Q Consensus       103 ~~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~~~~~  150 (160)
                      +-..++++||.|.||+++  ||+.+....+..+.+++.++|++++.+..+
T Consensus        80 ~~~la~~~~V~~~PT~~~~~~G~~v~~~~G~~~~~~l~~~i~~ll~~~~e  129 (132)
T d2hfda1          80 SEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE  129 (132)
T ss_dssp             HHHHHHHHTCCSCCEEEEEETTEEEEEECCCSCHHHHHHHHHHHHSCSSC
T ss_pred             CHHHHHhhccCcceeEEEEEcCcEeeeecCCCCHHHHHHHHHHHhCcccc
Confidence            356689999999999999  999876555567799999999999987654

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=96.89  E-value=0.00029  Score=46.52  Aligned_cols=41  Identities=15%  Similarity=0.179  Sum_probs=32.7

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||.|+||+++  ||+.+....+..+.+++.++|++.|
T Consensus        62 ~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          62 GIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             hhhhhcceeeeeEEEEEEcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            3578999999999998  9987654444556999999998764

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=96.74  E-value=0.00063  Score=45.18  Aligned_cols=41  Identities=12%  Similarity=0.089  Sum_probs=33.0

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||+++||+++  ||+.+....+..+.+++.++|++.|
T Consensus        65 ~l~~~~~I~~~Pt~~~~~~g~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          65 TTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCEEEEEECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            4578899999999999  9987643334556999999999876

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.73  E-value=0.00091  Score=45.88  Aligned_cols=42  Identities=10%  Similarity=0.080  Sum_probs=32.1

Q ss_pred             HHHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          104 FKFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      -..++++||+++||+++  ||+.+....+..+.+++.+.|+++|
T Consensus        75 ~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          75 EAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             HHHHHTTTCCSSSEEEEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHhcCcCcceEEEEEEcCeEEEEeeCCCCHHHHHHHHHHHh
Confidence            45689999999999999  9998765555667999999999876

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=96.66  E-value=0.00031  Score=46.51  Aligned_cols=40  Identities=13%  Similarity=0.156  Sum_probs=31.7

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+++.||.|+||+++  ||+.+.-..+..+.+++++.|+++|
T Consensus        63 ~~~~~~V~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          63 TTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             HHHHTTCCBSSEEEEEETTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred             cHHHCCcceeeEEEEEECCEEEEEEECCCCHHHHHHHHHHHh
Confidence            367899999999999  9987643334556999999998765

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.45  E-value=0.00066  Score=44.97  Aligned_cols=40  Identities=15%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+++.||+|+||+++  ||+.+....+..+.+++.+.|++.|
T Consensus        65 l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~L  106 (107)
T d1dbya_          65 VASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             HHHHHTCCSSCEEEEESSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             HHHHhcccceEEEEEEECCeEEEEEeCCCCHHHHHHHHHHhh
Confidence            578899999999999  8987753344556999999998875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0012  Score=43.80  Aligned_cols=39  Identities=18%  Similarity=0.236  Sum_probs=31.1

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .++++||.|+|||++  ||+.+.... +.+.+++.+.|+++|
T Consensus        65 ~~~~~~V~~~Pt~~~~~~G~~v~~~~-G~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          65 VASECEVKCMPTFQFFKKGQKVGEFS-GANKEKLEATINELV  105 (105)
T ss_dssp             HHHHTTCCBSSEEEEEETTEEEEEEE-SCCHHHHHHHHHHHC
T ss_pred             HHHHcCceEEEEEEEEECCEEEEEEe-CCCHHHHHHHHHhhC
Confidence            467899999999999  999985333 346889999998764

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.39  E-value=0.0011  Score=44.68  Aligned_cols=41  Identities=20%  Similarity=0.240  Sum_probs=31.7

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+++.||+|+||+++  ||+.+.... +.+.+++.++|++.|+
T Consensus        72 ~l~~~~~V~~~Pt~~~~~~G~~v~~~~-G~~~~~l~~~i~k~la  114 (114)
T d1xfla_          72 SVASDWAIQAMPTFMFLKEGKILDKVV-GAKKDELQSTIAKHLA  114 (114)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEE-SCCHHHHHHHHHHHCC
T ss_pred             eeccccceeeeEEEEEEECCEEEEEEe-CcCHHHHHHHHHHhhC
Confidence            3577899999999988  999875322 2358999999988763

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.25  E-value=0.0013  Score=44.21  Aligned_cols=41  Identities=17%  Similarity=0.283  Sum_probs=32.2

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..++++||.|+||+++  ||+.+.... +.+.++++++|++..+
T Consensus        69 ~l~~~~~v~~~Pt~~~~~~G~~v~~~~-G~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          69 AVAEAAGITAMPTFHVYKDGVKADDLV-GASQDKLKALVAKHAA  111 (112)
T ss_dssp             HHHHHHTCCBSSEEEEEETTEEEEEEE-SCCHHHHHHHHHHHHC
T ss_pred             cccccccccCCCEEEEEECCEEEEEEe-CcCHHHHHHHHHHHhC
Confidence            4578899999999988  999875332 2468999999988653

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.10  E-value=0.0022  Score=43.05  Aligned_cols=38  Identities=16%  Similarity=0.263  Sum_probs=30.7

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id  142 (160)
                      ..++++||.|+||+++  ||+...-..+..+.+++.++|.
T Consensus        75 ~~~~~~~V~~~PTli~~~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          75 AFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             HHHHHHTCCSSCEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             ccccccccccccEEEEEECCEEEEEEcCCCCHHHHHHHHc
Confidence            3577889999999988  9988765556777999988874

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=95.81  E-value=0.0028  Score=43.83  Aligned_cols=42  Identities=29%  Similarity=0.443  Sum_probs=32.3

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      .++.+||.|+||.++   +|+++....+..+.+++.+.|++++.+
T Consensus        98 ~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~k  142 (144)
T d1knga_          98 ASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK  142 (144)
T ss_dssp             HHHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred             hhhhcCccccceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            357789999998777   788765434466799999999988764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=95.74  E-value=0.003  Score=42.41  Aligned_cols=40  Identities=15%  Similarity=0.270  Sum_probs=29.8

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++++||+|+|||++  ||+.+....| ...+++.+.|++++
T Consensus        70 ~l~~~~~V~~~Pt~~~~k~G~~v~~~~G-~~~~~l~e~i~~~~  111 (112)
T d1f9ma_          70 TLAKELGIRVVPTFKILKENSVVGEVTG-AKYDKLLEAIQAAR  111 (112)
T ss_dssp             HHHHHHCCSSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             hhHhheeeccCCEEEEEECCEEEEEEeC-CCHHHHHHHHHHcc
Confidence            3467889999999999  9999653322 34678888887764

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0046  Score=41.19  Aligned_cols=39  Identities=31%  Similarity=0.325  Sum_probs=31.1

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+++.||.++|||++  ||+.+....+ .+.+++.+.|++.|
T Consensus        66 l~~~~~v~~~Pt~~~~~~G~~v~~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          66 TAATNNISATPTFQFFRNKVRIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             hhhhcCceeceEEEEEECCEEEEEEeC-CCHHHHHHHHHHhh
Confidence            467899999999988  9999754333 46888999888765

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.57  E-value=0.0039  Score=40.85  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=27.7

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      .++++||.|+||+++  ||+.+....+ .+.+++.++|++
T Consensus        63 ~~~~~~V~~~Pt~i~~k~G~~v~~~~G-~~~~~l~~~i~k  101 (103)
T d1syra_          63 VTEKENITSMPTFKVYKNGSSVDTLLG-ANDSALKQLIEK  101 (103)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEES-CCHHHHHHHHHT
T ss_pred             eeeeeeeecceEEEEEECCEEEEEEeC-cCHHHHHHHHHh
Confidence            467899999999888  9998753332 356788877764

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=95.34  E-value=0.003  Score=42.25  Aligned_cols=39  Identities=21%  Similarity=0.273  Sum_probs=29.9

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      .++++||.|+|||++  ||+.+....+ .+.+++.++|++..
T Consensus        71 l~~~~~I~~~Pt~~~~k~G~~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          71 VAEEWNVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             HHHHHHCSSTTEEEEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             ccccCeecccceEEEEECCEEEEEEcC-CCHHHHHHHHHHHh
Confidence            467889999999999  9998753322 45789999988753

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.28  E-value=0.0079  Score=40.34  Aligned_cols=41  Identities=17%  Similarity=0.248  Sum_probs=31.3

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      ..+++.||.|+||+++  ||+.+....| .+.+.+.+.|++.++
T Consensus        70 ~l~~~~~V~~~Pt~~~~~~G~~v~~~~G-~~~~~l~~~l~~~ik  112 (113)
T d1r26a_          70 EIVSKCRVLQLPTFIIARSGKMLGHVIG-ANPGMLRQKLRDIIK  112 (113)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred             hhHHHccccCCCEEEEEECCEEEEEEeC-CCHHHHHHHHHHHhc
Confidence            3578899999999999  9988753322 346888888888764

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0098  Score=39.34  Aligned_cols=40  Identities=13%  Similarity=0.158  Sum_probs=29.3

Q ss_pred             HHHhhcCCccccceEEE---CCEEecC--CCCCCCHHHHHHHHHH
Q 031378          104 FKFSATRGVYATPTFFV---NGFSLAG--AGSPLDYNGWRKVIDP  143 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI---NG~~~~g--a~s~~~~e~~~~~Id~  143 (160)
                      ...+++.||.|+||+++   ||+.+..  ..+..+.+++.+.|.+
T Consensus        72 ~~l~~~~~v~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          72 VALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             HHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             HHHHhhhehhhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            44578899999999998   6876532  2345668888888764

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.02  E-value=0.0077  Score=39.85  Aligned_cols=37  Identities=19%  Similarity=0.327  Sum_probs=27.7

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDP  143 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~  143 (160)
                      .++++||.++|||++  ||+.+....+ .+.+++.++|++
T Consensus        71 l~~~~~V~~~Pt~~~~~~G~~v~~~~G-~~~~~l~~~I~~  109 (111)
T d1xwaa_          71 IAMEYNISSMPTFVFLKNGVKVEEFAG-ANAKRLEDVIKA  109 (111)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEES-CCHHHHHHHHHH
T ss_pred             hhhcCCCccccEEEEEECCEEEEEEeC-CCHHHHHHHHHh
Confidence            467899999999998  9988753332 345778777765

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.0061  Score=41.60  Aligned_cols=41  Identities=29%  Similarity=0.524  Sum_probs=30.0

Q ss_pred             hhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHHhhh
Q 031378          107 SATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       107 a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~l~~  147 (160)
                      ++.+||.|+||.+|   ||+++.-..+..+.+++.+.|++++.+
T Consensus        87 ~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~k  130 (136)
T d1z5ye1          87 GLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEK  130 (136)
T ss_dssp             HHHHTCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHHH
T ss_pred             HHhcccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHHH
Confidence            45679999997766   788753223355689999988888765

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.88  E-value=0.0068  Score=38.83  Aligned_cols=37  Identities=19%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             HHHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHH
Q 031378          104 FKFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~I  141 (160)
                      ++...++||.+||.++|||+.+.. +.-.+.+++.++|
T Consensus        40 ~~ei~~ygVmstPalvIdg~vv~~-G~vPs~~ei~~~L   76 (77)
T d1iloa_          40 MDQILEAGLTALPGLAVDGELKIM-GRVASKEEIKKIL   76 (77)
T ss_dssp             HHHHHHHTCSSSSCEEETTEEEEC-SSCCCHHHHHHHC
T ss_pred             HHHHHHcCCcCCCEEEECCEEEEE-ecCCCHHHHHHHh
Confidence            333346899999999999998752 1223688877764

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.69  E-value=0.016  Score=39.07  Aligned_cols=41  Identities=7%  Similarity=0.131  Sum_probs=34.6

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      +.+++.||.|.||+++  ||++++ ..+..+.+.+.++|...+.
T Consensus        80 ~l~~~~~I~~yPTi~~f~~g~~~~-y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          80 AVAKKLGLTEEDSIYVFKEDEVIE-YDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             HHHHTTTCCSTTCEEEEESSSEEE-CCSCCSHHHHHHHHHHHHS
T ss_pred             chhhccccccCCcEEEeccCccEE-eeCCCCHHHHHHHHHHhcC
Confidence            4578999999999988  898875 5567889999999988874

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=93.86  E-value=0.02  Score=39.28  Aligned_cols=39  Identities=10%  Similarity=0.088  Sum_probs=28.6

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      .++..||.+||++++   ||++.....+..+.+++.+.|+++
T Consensus       102 ~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~l  143 (143)
T d2b5xa1         102 LTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV  143 (143)
T ss_dssp             HHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred             hHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHhC
Confidence            456789999998777   898754333355589999888764

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.66  E-value=0.029  Score=37.70  Aligned_cols=39  Identities=15%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             HHhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          105 KFSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       105 k~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      +.++..||.|+|+.+|   ||+... ..+..+.+++.+.|+++
T Consensus        92 ~~~~~~~v~~~P~~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          92 SVWANFGVTQQPAYAFVDPHGNVDV-VRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             HHHHHTTCCSSSEEEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred             hHHHhcCCCccCeEEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence            3467789999999999   787532 23456699999999875

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.47  E-value=0.041  Score=37.16  Aligned_cols=39  Identities=18%  Similarity=0.241  Sum_probs=29.0

Q ss_pred             HhhcCCccccceEEE---CCEE--ecCCCCCCCHHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV---NGFS--LAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~--~~ga~s~~~~e~~~~~Id~~  144 (160)
                      .++..||+++|+++|   ||+.  +....+.++.+++.+.|+++
T Consensus        91 ~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~L  134 (134)
T d1lu4a_          91 IWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL  134 (134)
T ss_dssp             HHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred             HHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHcC
Confidence            366789999999888   7754  33334567799999988764

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.36  E-value=0.027  Score=37.58  Aligned_cols=41  Identities=7%  Similarity=0.019  Sum_probs=30.8

Q ss_pred             HHhhcCCccccceEEE--CCEEecC--CCCCCCHHHHHHHHHHHh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAG--AGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~g--a~s~~~~e~~~~~Id~~l  145 (160)
                      ..+++++|.|+||+++  ||.....  ..+..+.+++.++|++..
T Consensus        73 ~l~~~~~v~~~Pti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          73 DLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             HHHHHTTCCSSSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             HHHHHhccccCCeEEEEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence            4578889999999999  8765431  234567999999998754

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=93.34  E-value=0.017  Score=39.29  Aligned_cols=39  Identities=8%  Similarity=0.061  Sum_probs=28.9

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      .++.+||.|+|+++|   ||++..-..+..+.+++.++|++.
T Consensus        98 ~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1          98 IAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             HHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             HHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence            467889999999999   887653333355688888888754

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.022  Score=37.78  Aligned_cols=41  Identities=15%  Similarity=0.109  Sum_probs=28.9

Q ss_pred             HhhcCCccccceEEE--CCEEec--CCCCCCCHHHHHHHHHHHhh
Q 031378          106 FSATRGVYATPTFFV--NGFSLA--GAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~--ga~s~~~~e~~~~~Id~~l~  146 (160)
                      .+.+.+|.|+||+++  ||....  ...+..+.+++.++|++.+.
T Consensus        73 l~~~~~i~~~Pt~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~  117 (120)
T d1meka_          73 LAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             SHHHHTCCSSSEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             HHHHhCCccCCeEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            356789999999866  775432  12346679999999887653

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.065  Score=37.12  Aligned_cols=43  Identities=12%  Similarity=0.091  Sum_probs=31.4

Q ss_pred             HHhhcCCccccceEEE--CCEEecCCCC----------CCCHHHHHHHHHHHhhh
Q 031378          105 KFSATRGVYATPTFFV--NGFSLAGAGS----------PLDYNGWRKVIDPLLSE  147 (160)
Q Consensus       105 k~a~~~GV~GTPTffI--NG~~~~ga~s----------~~~~e~~~~~Id~~l~~  147 (160)
                      ..+++.||.|+||+++  ||+.+....+          --+.+++.++|+.+..+
T Consensus        67 ~la~~~~I~~~PT~~~f~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~~  121 (137)
T d1qgva_          67 DFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG  121 (137)
T ss_dssp             TTTTSSCSCSSCEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             hhhhhcCeeeEEEEEEEeCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHHH
Confidence            4689999999999888  9988631111          02478899999988644

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.096  Score=32.90  Aligned_cols=31  Identities=19%  Similarity=0.377  Sum_probs=25.3

Q ss_pred             cCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHh
Q 031378          109 TRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       109 ~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++...|.+||||+.+-   +   ++++.+++++.+
T Consensus        53 ~~~~~tvPqIfi~g~~IG---G---~~el~~~~~~~~   83 (85)
T d1egoa_          53 GKPVETVPQIFVDQQHIG---G---YTDFAAWVKENL   83 (85)
T ss_dssp             CCCSCCSCEEEETTEEEE---S---SHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEECCEEEE---C---HHHHHHHHHhcC
Confidence            456788999999999984   3   789998888765

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.70  E-value=0.078  Score=35.64  Aligned_cols=39  Identities=13%  Similarity=0.135  Sum_probs=27.2

Q ss_pred             HhhcCCccccceEEE---CCEEecCCCCCCCHHHHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV---NGFSLAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       106 ~a~~~GV~GTPTffI---NG~~~~ga~s~~~~e~~~~~Id~~  144 (160)
                      .++..||.|+|+.+|   ||+.+....+..+.+++.++++.+
T Consensus        94 ~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_          94 VLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             HHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             hhhhhhccccceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence            466789999997777   898854323355578887777543

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=91.55  E-value=0.12  Score=31.30  Aligned_cols=29  Identities=17%  Similarity=0.279  Sum_probs=22.0

Q ss_pred             hcCCccccceEEECCEEecCCCCCCCHHHHHHH
Q 031378          108 ATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKV  140 (160)
Q Consensus       108 ~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~  140 (160)
                      +..|..++|+++|||+.+.|    +..+.+.++
T Consensus        44 ~~~g~~tvP~i~i~g~~igG----f~~d~l~~L   72 (74)
T d1r7ha_          44 MALGYVQAPVVEVDGEHWSG----FRPERIKQL   72 (74)
T ss_dssp             HHTTCBCCCEEEETTEEEES----CCHHHHHHH
T ss_pred             HHhCCCCcCEEEECCEEEeC----CCHhHHHHh
Confidence            45689999999999999854    345666654

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=91.05  E-value=0.074  Score=38.39  Aligned_cols=67  Identities=19%  Similarity=0.281  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhhcCCChhHHHHcccCChhHHHHHHHHHHHhhcCCccccceEEE---CCEEe-cCCC-------CCCCHHH
Q 031378           68 VKEIVKFAAEGIGNSYSSALESGFSDRSTDLLTRVSFKFSATRGVYATPTFFV---NGFSL-AGAG-------SPLDYNG  136 (160)
Q Consensus        68 ~~~la~~A~~~~Gld~~~~f~~~l~~~~~~~~i~~~~k~a~~~GV~GTPTffI---NG~~~-~ga~-------s~~~~e~  136 (160)
                      .+.+...+.+. |++-     ..+.+..        -+.++.+||.+||++||   +|+++ .|..       ...+..+
T Consensus        83 ~e~~~~~~~~~-~~~~-----p~l~D~~--------~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~  148 (187)
T d2cvba1          83 PEKMAAFAEEH-GIFF-----PYLLDET--------QEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHD  148 (187)
T ss_dssp             HHHHHHHHHHH-TCCS-----CEEECSS--------SHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCH
T ss_pred             hHHHHHHHHHh-CCcc-----eeeechh--------hhhcccccccceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHH
Confidence            45556666553 7653     2333322        13467899999998888   67774 2321       1234567


Q ss_pred             HHHHHHHHhhhc
Q 031378          137 WRKVIDPLLSEK  148 (160)
Q Consensus       137 ~~~~Id~~l~~~  148 (160)
                      ++++|+++++++
T Consensus       149 L~~Ai~~ll~g~  160 (187)
T d2cvba1         149 LEAAIEALLRGE  160 (187)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999999876

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.01  E-value=0.057  Score=35.23  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             HHhhcCCccccceEEECCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378          105 KFSATRGVYATPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus       105 k~a~~~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      .+.++.|+. +|+++|||+.+..  +.++.+++++.|+++..
T Consensus        58 ~l~~~y~~~-VPvl~idg~~~~~--g~~d~~~L~~~L~~l~~   96 (100)
T d1wjka_          58 TWYERYKFD-IPVFHLNGQFLMM--HRVNTSKLEKQLRKLSG   96 (100)
T ss_dssp             HHHHHSSSS-CSEEEESSSEEEE--SSCCHHHHHHHHHSSSC
T ss_pred             HHHHHhccc-CCceeecCceEEe--CCCCHHHHHHHHHHHhc
Confidence            446667887 9999999977532  35668999999886543

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=90.63  E-value=0.1  Score=33.90  Aligned_cols=38  Identities=13%  Similarity=0.041  Sum_probs=27.0

Q ss_pred             hhcCCccccceEEE--CCEEec--CCCCCCCHHHHHHHHHHH
Q 031378          107 SATRGVYATPTFFV--NGFSLA--GAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       107 a~~~GV~GTPTffI--NG~~~~--ga~s~~~~e~~~~~Id~~  144 (160)
                      ..+.+|.|+||+++  ||....  ...+..+.+++.++|++-
T Consensus        69 ~~~~~v~~~Pti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~  110 (116)
T d2djja1          69 DVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN  110 (116)
T ss_dssp             CCSSCCSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHT
T ss_pred             hhcccccCCCEEEEEECCccCceEEecCCCCHHHHHHHHHHc
Confidence            35779999999865  775432  223466799999998763

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.53  E-value=0.12  Score=34.96  Aligned_cols=40  Identities=10%  Similarity=-0.083  Sum_probs=29.6

Q ss_pred             HhhcCCccccceEEE--CCEEec--CCCCCCCHHHHHHHHHHHh
Q 031378          106 FSATRGVYATPTFFV--NGFSLA--GAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~--ga~s~~~~e~~~~~Id~~l  145 (160)
                      .+.+.+|+|+||+++  +|....  ...+..+.+++.++|++-.
T Consensus        77 ~~~~~~v~~~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~  120 (140)
T d2b5ea1          77 DVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENG  120 (140)
T ss_dssp             CCSSCCCSSSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred             hccccccccCCeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcC
Confidence            468899999999988  775432  1223567999999998754

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.71  E-value=0.33  Score=36.21  Aligned_cols=51  Identities=16%  Similarity=0.246  Sum_probs=37.0

Q ss_pred             ccCChhHHHHHHHHHHHhhcCCccc--cceEEECCEEecCCCCCCCHHHHHHHHHHHhh
Q 031378           90 GFSDRSTDLLTRVSFKFSATRGVYA--TPTFFVNGFSLAGAGSPLDYNGWRKVIDPLLS  146 (160)
Q Consensus        90 ~l~~~~~~~~i~~~~k~a~~~GV~G--TPTffING~~~~ga~s~~~~e~~~~~Id~~l~  146 (160)
                      -|.++...++   ...|++..|.++  ||.++|||+....   ..+.+.|...|++.+.
T Consensus        54 ~fa~~~~t~R---Q~~Y~~~~g~~~vyTPq~vvnG~~~~~---gs~~~~~~~~i~~~~~  106 (225)
T d2axoa1          54 SLASKENTER---QYGYMRALGRNGVYTPQAILNGRDHVK---GADVRGIYDRLDAFKR  106 (225)
T ss_dssp             TTCCHHHHHH---HHHHHHHTTCSCCCSSEEEETTTEEEE---TTCHHHHHHHHHHHHH
T ss_pred             CCCCchhhHH---HHHHHHhcCCCCCCceeEEEeCccccc---ccCHHHHHHHHHHHhh
Confidence            3555554444   355788888775  8889999998765   3448999999988764

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=0.23  Score=34.44  Aligned_cols=45  Identities=18%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             HHHhhcCCccccceEEE----CCEEecCCCCCCCHHHHHHHHHHHhhhcC
Q 031378          104 FKFSATRGVYATPTFFV----NGFSLAGAGSPLDYNGWRKVIDPLLSEKG  149 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI----NG~~~~ga~s~~~~e~~~~~Id~~l~~~~  149 (160)
                      ..++.+.+|.|+||++|    +|+.+.. .+..+.++|.+.+++.+...+
T Consensus        91 ~~~~~~y~v~~~Pti~~idp~~ge~v~~-~~~~~~~~fl~~L~~fl~~~~  139 (147)
T d2dlxa1          91 QRYIQFYKLGDFPYVSILDPRTGQKLVE-WHQLDVSSFLDQVTGFLGEHG  139 (147)
T ss_dssp             HHHHHHHTCCSSSEEEEECTTTCCCCEE-ESSCCHHHHHHHHHHHHHHTC
T ss_pred             hhhhhheecCceeEEEEEeCCCCeEecc-cCCCCHHHHHHHHHHHHhhCC
Confidence            44577889999998876    3776542 235668999999999998663

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.34  E-value=0.099  Score=34.99  Aligned_cols=35  Identities=23%  Similarity=0.174  Sum_probs=22.6

Q ss_pred             HhhcCCccccceEEE--CCEEecCCCCCCCHHHHHHHH
Q 031378          106 FSATRGVYATPTFFV--NGFSLAGAGSPLDYNGWRKVI  141 (160)
Q Consensus       106 ~a~~~GV~GTPTffI--NG~~~~ga~s~~~~e~~~~~I  141 (160)
                      .++++||.|.||+++  ||..+.+.. ....+.+++++
T Consensus        81 l~~~~~V~~iPT~i~~~~g~~l~~~~-~~~~~ll~~~~  117 (119)
T d1woua_          81 FRKNLKVTAVPTLLKYGTPQKLVESE-CLQANLVEMLF  117 (119)
T ss_dssp             HHHHHCCCSSSEEEETTSSCEEEGGG-GGCHHHHHHHH
T ss_pred             HHHhCCeEEEEEEEEEECCeEEeeee-cCCHHHHHHHh
Confidence            467789999999998  777665432 23344444444

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=86.17  E-value=0.32  Score=29.98  Aligned_cols=27  Identities=19%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             CCccccceEEECCEEecCCCCCCCHHHHHHHHH
Q 031378          110 RGVYATPTFFVNGFSLAGAGSPLDYNGWRKVID  142 (160)
Q Consensus       110 ~GV~GTPTffING~~~~ga~s~~~~e~~~~~Id  142 (160)
                      .|..++|.+||||+.+-|      ++++.++.+
T Consensus        47 ~g~~tvP~i~i~~~~IGG------~~el~~l~~   73 (82)
T d1fova_          47 SGRTTVPQIFIDAQHIGG------YDDLYALDA   73 (82)
T ss_dssp             HSSCCSCEEEETTEEEES------HHHHHHHHH
T ss_pred             hCCCCCCeEEECCEEEec------HHHHHHHHH
Confidence            467789999999999843      777776543

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.14  E-value=0.6  Score=30.68  Aligned_cols=39  Identities=8%  Similarity=0.141  Sum_probs=27.4

Q ss_pred             HhhcCCc--cccceEEE--CCEE---ecCCCCCCCHHHHHHHHHHH
Q 031378          106 FSATRGV--YATPTFFV--NGFS---LAGAGSPLDYNGWRKVIDPL  144 (160)
Q Consensus       106 ~a~~~GV--~GTPTffI--NG~~---~~ga~s~~~~e~~~~~Id~~  144 (160)
                      .+++.||  .|.||+++  ||..   .....+..+.+++.++|.+-
T Consensus        71 l~~~~~i~~~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~  116 (122)
T d2c0ga2          71 LGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN  116 (122)
T ss_dssp             HHHHTTCCTTSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHH
T ss_pred             HHHHhhcccCCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHh
Confidence            4566777  68999988  5531   12345578899999998764

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=82.43  E-value=0.62  Score=32.29  Aligned_cols=41  Identities=20%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             HHHhhcCCccccceEEE---CCEEe---cCCCCCCCHHHHHHHHHHHh
Q 031378          104 FKFSATRGVYATPTFFV---NGFSL---AGAGSPLDYNGWRKVIDPLL  145 (160)
Q Consensus       104 ~k~a~~~GV~GTPTffI---NG~~~---~ga~s~~~~e~~~~~Id~~l  145 (160)
                      ..++...+|.|+|+++|   ||+++   .|.. .++.+++.+.|++++
T Consensus       129 ~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~-~~~~~e~~~~l~al~  175 (176)
T d1jfua_         129 QDLKAIGRALGMPTSVLVDPQGCEIATIAGPA-EWASEDALKLIRAAT  175 (176)
T ss_dssp             HHHHTTTCCSSSSEEEEECTTSBEEEEEESCC-CTTSHHHHHHHHHHH
T ss_pred             HHHhhhccCCCCCeEEEEcCCCEEEEEEECCC-CCChHHHHHHHHHhc
Confidence            34567788999999777   78764   3433 355688999998876

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=81.72  E-value=0.47  Score=28.78  Aligned_cols=19  Identities=21%  Similarity=0.457  Sum_probs=16.5

Q ss_pred             cCCccccceEEECCEEecC
Q 031378          109 TRGVYATPTFFVNGFSLAG  127 (160)
Q Consensus       109 ~~GV~GTPTffING~~~~g  127 (160)
                      ..|.+++|.++|||..+.|
T Consensus        45 ~~g~~tvP~i~i~~~~i~G   63 (76)
T d1h75a_          45 AQGFRQLPVVIAGDLSWSG   63 (76)
T ss_dssp             HTTCCSSCEEEETTEEEES
T ss_pred             hcCCCCCCEEEECCEEEEC
Confidence            4689999999999999864