Citrus Sinensis ID: 031384

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MKERRGLLCRSFALKNEVIETADGAQQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHcccccHHHHHHHHHcccccEEEEEcccHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccEEEEcEEEEEcccHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEcccccccccHEEcccccccccHcccHHHHcccccEEEEccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccEEEcccHHHHEEEEEEHHHHHHHHccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mkerrgllcrsfALKNEVIETADGAQQVEEEEEKKEMEKPRETllysiaplpllfdaalpgagtvralfGPFVELVkswnlpdwlvhwghpgNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKakdlhpkllggMFFFFAlgatggitslltsdkpifer
Flexible Loop (DISEMBL)
mkerrgllcrsfalknevietadgaqqveeeeekkemekprETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGItslltsdkpifer
Low Complexity Region (SEG)
MKERRGLLCRSFALKNEVIETADGAQQVeeeeekkemekPRETLLYSIaplpllfdaalpgaGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKllggmffffalgatggITSLLTSDKPIFER
Disordered region (IsUnstruct)
******************************************TLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDME**AKAKDLHPKLLGGMFFFFALGATGGITSLLT********
Disordered Region (DISOPRED)
********CRSFALKNEVI**************************YSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRY**************PKLLGGMFFFFALGATGGITSLLTSDKP****
Disordered Region (DISEMBL)
MKERRGLLCRSFALKNEVIETAD*****************RETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER
Disordered Region (DISPRO)
****RGLLCRSFALKNEVIETADGAQ***********EKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPI***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKERRGLLCRSFALKNEVIETADGAQQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
224140263	182	predicted protein [Populus trichocarpa]	0.775	0.681	0.879	2e-57
449451050	255	PREDICTED: uncharacterized protein LOC10	0.781	0.490	0.832	2e-56
449482416	255	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.781	0.490	0.824	1e-55
225441197	260	PREDICTED: uncharacterized protein LOC10	0.968	0.596	0.754	3e-55
356548264	243	PREDICTED: uncharacterized protein LOC10	0.843	0.555	0.742	3e-51
297739961	182	unnamed protein product [Vitis vinifera]	0.768	0.675	0.869	2e-50
18404264	256	uncharacterized protein [Arabidopsis tha	0.918	0.574	0.708	5e-50
334184737	255	uncharacterized protein [Arabidopsis tha	0.918	0.576	0.708	5e-50
255556892	263	conserved hypothetical protein [Ricinus	0.737	0.448	0.906	1e-49
297827189	258	hypothetical protein ARALYDRAFT_482670 [	0.918	0.569	0.679	3e-46

>gi|224140263|ref|XP_002323503.1| predicted protein [Populus trichocarpa] gi|222868133|gb|EEF05264.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/124 (87%), Positives = 115/124 (92%)

Query: 37  MEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAV 96
           M+KP+ TLLYS  PLPLLF AALPGA TVR+LFGPFVE+VKS NLPDWLVHWGHPGNMAV
Sbjct: 1   MDKPKMTLLYSFIPLPLLFTAALPGAATVRSLFGPFVEIVKSLNLPDWLVHWGHPGNMAV 60

Query: 97  VLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKP 156
           VLFAMGGYGTYLGF IR+SDD+EEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK 
Sbjct: 61  VLFAMGGYGTYLGFRIRFSDDVEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKT 120

Query: 157 IFER 160
           IFE 
Sbjct: 121 IFES 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451050|ref|XP_004143275.1| PREDICTED: uncharacterized protein LOC101222568 [Cucumis sativus]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 116/131 (88%), Gaps = 6/131 (4%)

Query: 29  EEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHW 88
           E +EE  EM       LYS++P PLLF AALPGAGTVR+LFGPFVELVKSWNLP+WLVHW
Sbjct: 72  ETKEETSEMR------LYSLSPFPLLFIAALPGAGTVRSLFGPFVELVKSWNLPEWLVHW 125

Query: 89  GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGIT 148
           GHPGNMAVVLFAMGGYGTYLGF IRYSDD+EEKA AKDLHPKLLGGMFFFFALGATGG+T
Sbjct: 126 GHPGNMAVVLFAMGGYGTYLGFRIRYSDDVEEKAYAKDLHPKLLGGMFFFFALGATGGVT 185

Query: 149 SLLTSDKPIFE 159
           SLLTSDKPI E
Sbjct: 186 SLLTSDKPILE 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482416|ref|XP_004156275.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101230564 [Cucumis sativus]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/131 (82%), Positives = 115/131 (87%), Gaps = 6/131 (4%)

Query: 29  EEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHW 88
           E +EE  EM       LYS++P PLLF AALPGAGTVR+LFGPFVELVKSWNLP+WLVHW
Sbjct: 72  ETKEETSEMR------LYSLSPFPLLFIAALPGAGTVRSLFGPFVELVKSWNLPEWLVHW 125

Query: 89  GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGIT 148
           GHPGNMAVVLFAMGGYGTYLGF IRYSDD+EEKA AKDLHPKLLGGM FFFALGATGG+T
Sbjct: 126 GHPGNMAVVLFAMGGYGTYLGFRIRYSDDVEEKAYAKDLHPKLLGGMXFFFALGATGGVT 185

Query: 149 SLLTSDKPIFE 159
           SLLTSDKPI E
Sbjct: 186 SLLTSDKPILE 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441197|ref|XP_002266366.1| PREDICTED: uncharacterized protein LOC100255653 [Vitis vinifera]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 117/155 (75%), Positives = 131/155 (84%)

Query: 5   RGLLCRSFALKNEVIETADGAQQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAGT 64
           R L   SF LK++  E      Q + E+E+++M + RETLLYS  PLPLL  AALPGAG 
Sbjct: 47  RPLFTPSFVLKDDHCEVIATFDQDKVEDEEEDMREGRETLLYSFTPLPLLLVAALPGAGA 106

Query: 65  VRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKA 124
           VR+LFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGF IR+S+D+EEKAKA
Sbjct: 107 VRSLFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRFSEDVEEKAKA 166

Query: 125 KDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFE 159
           KDLHPKLL GMFFFFALGATGG+TSLLTSD+PIFE
Sbjct: 167 KDLHPKLLAGMFFFFALGATGGVTSLLTSDRPIFE 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548264|ref|XP_003542523.1| PREDICTED: uncharacterized protein LOC100793792 [Glycine max]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 113/136 (83%), Gaps = 1/136 (0%)

Query: 26  QQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAAL-PGAGTVRALFGPFVELVKSWNLPDW 84
           Q    E E  +  +  + +L+S +P PLL  AAL PG+  V ++FGPFVELVKSWNLPDW
Sbjct: 50  QDSPLELELVKSTQNTQIILHSFSPFPLLCAAALLPGSEAVTSVFGPFVELVKSWNLPDW 109

Query: 85  LVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGAT 144
           LVHWGHPGNMAVVLFAMGGYGTYLGF IRYSD++EEKAKAKDLHPKLL GMFFFFALGAT
Sbjct: 110 LVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDNLEEKAKAKDLHPKLLAGMFFFFALGAT 169

Query: 145 GGITSLLTSDKPIFER 160
           GGIT+LLTSDKPIFE 
Sbjct: 170 GGITALLTSDKPIFES 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739961|emb|CBI30143.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 107/123 (86%), Positives = 114/123 (92%)

Query: 37  MEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAV 96
           M + RETLLYS  PLPLL  AALPGAG VR+LFGPFVELVKSWNLPDWLVHWGHPGNMAV
Sbjct: 1   MREGRETLLYSFTPLPLLLVAALPGAGAVRSLFGPFVELVKSWNLPDWLVHWGHPGNMAV 60

Query: 97  VLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKP 156
           VLFAMGGYGTYLGF IR+S+D+EEKAKAKDLHPKLL GMFFFFALGATGG+TSLLTSD+P
Sbjct: 61  VLFAMGGYGTYLGFRIRFSEDVEEKAKAKDLHPKLLAGMFFFFALGATGGVTSLLTSDRP 120

Query: 157 IFE 159
           IFE
Sbjct: 121 IFE 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404264|ref|NP_565853.1| uncharacterized protein [Arabidopsis thaliana] gi|20197943|gb|AAM15322.1| Expressed protein [Arabidopsis thaliana] gi|21555809|gb|AAM63938.1| unknown [Arabidopsis thaliana] gi|26983860|gb|AAN86182.1| unknown protein [Arabidopsis thaliana] gi|330254219|gb|AEC09313.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 123/151 (81%), Gaps = 4/151 (2%)

Query: 10  RSFALKNEVIETADGAQQVEEE-EEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRAL 68
           R   L        DG +++E   +++ E+   RETL+ S++PLPLL  A+LPGA TVR++
Sbjct: 50  RKIPLTPACSSIVDGDEEIEARGDDENEI---RETLMLSVSPLPLLLVASLPGAETVRSV 106

Query: 69  FGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLH 128
           FGP VE+VKS NLPDWLVHWGHPGNMAVVLFAMGGYGTYLGF IRYSDD+EEKAKAKDLH
Sbjct: 107 FGPVVEIVKSLNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDIEEKAKAKDLH 166

Query: 129 PKLLGGMFFFFALGATGGITSLLTSDKPIFE 159
           PKLL GMFFFFALGATGG+ SLLTSDKPIFE
Sbjct: 167 PKLLAGMFFFFALGATGGVISLLTSDKPIFE 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184737|ref|NP_973615.2| uncharacterized protein [Arabidopsis thaliana] gi|330254220|gb|AEC09314.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 123/151 (81%), Gaps = 4/151 (2%)

Query: 10  RSFALKNEVIETADGAQQVEEE-EEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRAL 68
           R   L        DG +++E   +++ E+   RETL+ S++PLPLL  A+LPGA TVR++
Sbjct: 50  RKIPLTPACSSIVDGDEEIEARGDDENEI---RETLMLSVSPLPLLLVASLPGAETVRSV 106

Query: 69  FGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLH 128
           FGP VE+VKS NLPDWLVHWGHPGNMAVVLFAMGGYGTYLGF IRYSDD+EEKAKAKDLH
Sbjct: 107 FGPVVEIVKSLNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDIEEKAKAKDLH 166

Query: 129 PKLLGGMFFFFALGATGGITSLLTSDKPIFE 159
           PKLL GMFFFFALGATGG+ SLLTSDKPIFE
Sbjct: 167 PKLLAGMFFFFALGATGGVISLLTSDKPIFE 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556892|ref|XP_002519479.1| conserved hypothetical protein [Ricinus communis] gi|223541342|gb|EEF42893.1| conserved hypothetical protein [Ricinus communis]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/118 (90%), Positives = 111/118 (94%)

Query: 42  ETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAM 101
           ET LYS  PLPLL  AALPGAGTVR+L GPFVELVKSWNLP+WLVHWGHPGNMAVVLFAM
Sbjct: 87  ETHLYSFTPLPLLLVAALPGAGTVRSLIGPFVELVKSWNLPEWLVHWGHPGNMAVVLFAM 146

Query: 102 GGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFE 159
           GGYGTYLGF IR+SDD+EEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFE
Sbjct: 147 GGYGTYLGFRIRFSDDVEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFE 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827189|ref|XP_002881477.1| hypothetical protein ARALYDRAFT_482670 [Arabidopsis lyrata subsp. lyrata] gi|297327316|gb|EFH57736.1| hypothetical protein ARALYDRAFT_482670 [Arabidopsis lyrata subsp. lyrata]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/153 (67%), Positives = 120/153 (78%), Gaps = 6/153 (3%)

Query: 10  RSFALKNEVIETADGAQQVEEE-EEKKEMEKPRETLLYSIAPLPLLFDAALPGAG--TVR 66
           R   L        +G + VE   +++ E+   +ETL+ S++PLPLL  A+LPG    TV 
Sbjct: 50  RKIPLTPACSSIRNGDESVEARGDDENEI---KETLMLSVSPLPLLLVASLPGGNNETVT 106

Query: 67  ALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKD 126
           ++FGP VE+VKS NLPDWLVHWGHPGNMAVVLFAMGGYGTYLGF IRYSDD+EEKAKAKD
Sbjct: 107 SVFGPVVEIVKSLNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDIEEKAKAKD 166

Query: 127 LHPKLLGGMFFFFALGATGGITSLLTSDKPIFE 159
           LHPKLL GMFFFFALGATGG+ SLLTSDKPIFE
Sbjct: 167 LHPKLLAGMFFFFALGATGGVISLLTSDKPIFE 199

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:505006302	256	AT2G36885 "AT2G36885" [Arabido	0.743	0.464	0.638	5.7e-36

TAIR|locus:505006302 AT2G36885 "AT2G36885" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 76/119 (63%), Positives = 83/119 (69%)

Query:    41 RETLLYSIXXXXXXXXXXXXXXGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFA 100
             RETL+ S+               TVR++FGP VE+VKS NLPDWLVHWGHPGNMAVVLFA
Sbjct:    79 RETLMLSVSPLPLLLVASLPGAETVRSVFGPVVEIVKSLNLPDWLVHWGHPGNMAVVLFA 138

Query:   101 MGGYGTYLGFCIRYSDDMEEKAKAKDLHPKXXXXXXXXXXXXXXXXITSLLTSDKPIFE 159
             MGGYGTYLGF IRYSDD+EEKAKAKDLHPK                + SLLTSDKPIFE
Sbjct:   139 MGGYGTYLGFRIRYSDDIEEKAKAKDLHPKLLAGMFFFFALGATGGVISLLTSDKPIFE 197


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      160       119   0.00091  102 3  11 22  0.47    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  139 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.88u 0.18s 10.06t   Elapsed:  00:00:00
  Total cpu time:  9.88u 0.18s 10.06t   Elapsed:  00:00:00
  Start:  Fri May 10 23:48:22 2013   End:  Fri May 10 23:48:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XVI3139	hypothetical protein (183 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00050871	hypothetical protein (194 aa)			•						0.503
	estExt_Genewise1_v1.C_1340217	hypothetical protein (132 aa)			•						0.503
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•						0.499
	gw1.I.6006.1	hypothetical protein (200 aa)			•						0.498
	estExt_fgenesh4_pg.C_LG_X1962	hypothetical protein (190 aa)			•						0.498
	eugene3.00030086	hypothetical protein (121 aa)			•						0.497
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•						0.496
	gw1.X.3020.1	hypothetical protein (83 aa)			•						0.495
	gw1.I.3658.1	hypothetical protein (201 aa)			•						0.495
	estExt_fgenesh4_pg.C_LG_V1224	SubName- Full=Putative uncharacterized protein; (262 aa)			•						0.494

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam13301	144	pfam13301, DUF4079, Protein of unknown function (D	2e-08

>gnl|CDD|222033 pfam13301, DUF4079, Protein of unknown function (DUF4079)

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 89  GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEE--------KAKAKDLHPKLLGGMFFFFA 140
            HP  M +++F +GGY  YLG+  R     E         K K +  H +L   +     
Sbjct: 5   IHPVLMGLLVFPVGGYAAYLGWQARRRRLAENPGTRKELVKGKFRLRHYRLGSALLALMV 64

Query: 141 LGATGGITSLLTSDKPIFE 159
           LG  GG       +  +F 
Sbjct: 65  LGLLGGQLGTYRRNGKLFW 83

This is an uncharacterized family of proteins. Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	99.78
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	87.94
PF02447	441	GntP_permease: GntP family permease; InterPro: IPR	85.48
PRK13681	35	hypothetical protein; Provisional	84.03
PF04238	133	DUF420: Protein of unknown function (DUF420); Inte	83.0
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	81.23
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	80.9
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	80.69

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=99.78  E-value=1.4e-19  Score=145.14  Aligned_cols=75  Identities=33%  Similarity=0.509  Sum_probs=69.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHH---------------------------------------HHHhHh
Q 031384           86 VHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEE---------------------------------------KAKAKD  126 (160)
Q Consensus        86 vhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Ev---------------------------------------k~K~~~  126 (160)
                      ..++||++|+.++|++++|+.|+|||+|+..+.+.                                       +.|+|+
T Consensus         2 l~liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~   81 (175)
T PF13301_consen    2 LALIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQENHGRWLTGGVVVAVLIALAYSIARAIFLILALTGTRKELVKLKARD   81 (175)
T ss_pred             chHHhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhccccccchhcccchhhHHHHHHHHHHHHHHHHHhhhhHH
Confidence            36899999977779999999999999999955555                                       589999


Q ss_pred             hchhhHHHHHHHHHHhhhhhHhHHhhCCCCCcCC
Q 031384          127 LHPKLLGGMFFFFALGATGGITSLLTSDKPIFER  160 (160)
Q Consensus       127 ~H~qlgs~lL~fMvLG~iGGMlSLvmq~kPI~ES  160 (160)
                      +|+|+|+++++||++|++||+++..+|++|+|+|
T Consensus        82 ~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~s  115 (175)
T PF13301_consen   82 RHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWS  115 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccC
Confidence            9999999999999999999999999999999987

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=87.94  E-value=1.6  Score=31.85  Aligned_cols=71  Identities=15%  Similarity=-0.006  Sum_probs=51.9

Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCC
Q 031384           81 LPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK  155 (160)
Q Consensus        81 LPE~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~k  155 (160)
                      .+....-+.|-+++ ++-++.+.-+.++.+.-+...   .+..+++.|..+|-..+.++++=.+.|.++..+++.
T Consensus        29 ~~~~~~~~~H~~lq-~l~~~~~~~G~~~~~~~~~~~---~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~   99 (137)
T PF03188_consen   29 KSRKWWFRIHWILQ-VLALVFAIIGFVAIFINKNRN---GKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGL   99 (137)
T ss_pred             cccchHHHHHHHHH-HHHHHHHHHHHHHHHHhcccc---CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCC
Confidence            34444566788888 666666666666666544222   346788899999999999999999999998876443

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake

Probab=85.48  E-value=0.71  Score=42.17  Aligned_cols=59  Identities=20%  Similarity=0.034  Sum_probs=36.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhh-hheeeeeeCCHHH-HHHhHhhchhhHHHHHHHHHHhhhhhHhH
Q 031384           86 VHWGHPGNMAVVLFAMGGYGTY-LGFCIRYSDDMEE-KAKAKDLHPKLLGGMFFFFALGATGGITS  149 (160)
Q Consensus        86 vhwGHPlmM~wVLlamg~Ya~Y-LGwQiR~tad~Ev-k~K~~~~H~qlgs~lL~fMvLG~iGGMlS  149 (160)
                      .=.|+|..   .|+.-.+++.| +|++  +..+.++ .+-....=...|.++|..=+-|+.|+++.
T Consensus       260 ~flG~p~i---ALlig~l~a~~~l~~~--~~~~~~~~~~~~~~al~~~g~IlLItgaGGafg~vl~  320 (441)
T PF02447_consen  260 SFLGDPNI---ALLIGVLIALYLLGRR--RGMSREEVMKWLEKALKPAGMILLITGAGGAFGQVLK  320 (441)
T ss_pred             HHhCCcHH---HHHHHHHHHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence            44567753   34444445554 4543  3333333 35566667788999999889999998874

Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane

>PRK13681 hypothetical protein; Provisional

Probab=84.03  E-value=0.48  Score=30.66  Aligned_cols=17  Identities=29%  Similarity=0.796  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHhhhhhHh
Q 031384          132 LGGMFFFFALGATGGIT  148 (160)
Q Consensus       132 gs~lL~fMvLG~iGGMl  148 (160)
                      -..+|++|++|.+||++
T Consensus         8 ~i~lfalmAiGgigGvm   24 (35)
T PRK13681          8 VIALFLLMAIGGIGGVM   24 (35)
T ss_pred             HHHHHHHHHhcCcccee
Confidence            35689999999999986

>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices

Probab=83.00  E-value=3.2  Score=32.52  Aligned_cols=53  Identities=21%  Similarity=0.141  Sum_probs=43.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhh
Q 031384           88 WGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLT  152 (160)
Q Consensus        88 wGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvm  152 (160)
                      ..|=++ |.+.+.+.+|+.|.|++.|           ..+|+|+|.|-+-....-++.|++--+|
T Consensus        79 ~~Hi~L-A~~~~pL~l~tl~~a~~~~-----------~~~Hrki~r~t~piWlyvsvTGvvVYlm  131 (133)
T PF04238_consen   79 ISHIIL-AIVALPLVLYTLYRALRGR-----------FTRHRKIGRWTFPIWLYVSVTGVVVYLM  131 (133)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHcC-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345444 4889999999999999884           6799999999999999988888875544

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=81.23  E-value=5.7  Score=31.11  Aligned_cols=29  Identities=24%  Similarity=0.216  Sum_probs=20.0

Q ss_pred             HhHhhchhhHHHHHHHHHHhhhhhHhHHh
Q 031384          123 KAKDLHPKLLGGMFFFFALGATGGITSLL  151 (160)
Q Consensus       123 K~~~~H~qlgs~lL~fMvLG~iGGMlSLv  151 (160)
                      .+.+.|..+|-..+.++++=.++|..+..
T Consensus        90 hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~  118 (183)
T cd08761          90 HFTSWHGILGLVTVILIVLQALGGLALLY  118 (183)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhHHHHh
Confidence            46667777777777777777777776543

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=80.90  E-value=6.8  Score=28.79  Aligned_cols=69  Identities=19%  Similarity=0.130  Sum_probs=50.4

Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCC
Q 031384           83 DWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK  155 (160)
Q Consensus        83 E~IvhwGHPlmM~wVLlamg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~k  155 (160)
                      .....+.|=+++ ++-+.++.-+.++++.-+..   ..+..+.+.|..+|-..+.++++=.++|......+..
T Consensus        32 ~~~~~~~H~~l~-~l~~~~~~~G~~~~~~~~~~---~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~  100 (131)
T cd08554          32 KRALKLLHAILH-LLAFVLGLVGLLAVFLFHNA---GGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLL  100 (131)
T ss_pred             hhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc---cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            334556677787 67777777777777755421   1134678899999999999999999999998765554

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=80.69  E-value=3.6  Score=30.00  Aligned_cols=66  Identities=20%  Similarity=0.149  Sum_probs=41.0

Q ss_pred             hhHHHH--HHHHH-HHHHHhhhheeeeeeCCHHHHHHhHhhchhhHHHHHHHHHHhhhhhHhHHhhCCCCCcCC
Q 031384           90 HPGNMA--VVLFA-MGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER  160 (160)
Q Consensus        90 HPlmM~--wVLla-mg~Ya~YLGwQiR~tad~Evk~K~~~~H~qlgs~lL~fMvLG~iGGMlSLvmq~kPI~ES  160 (160)
                      ||++|.  |+++. .|+.+.+..+ .|.    ..|......|.-+-.+.++++++|..-...+--.++++-|.|
T Consensus         2 H~~lm~~~f~~l~~~~il~~r~~~-~~~----~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s   70 (137)
T PF03188_consen    2 HPILMTIGFVFLMPEGILAARYNP-FRR----KSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKS   70 (137)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhh-hcc----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Confidence            999993  44333 4444444222 221    223445567888888888888888877777666666676654

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 10/36 (27%)

Query: 33 EKKEMEKPRETL-LYSIAPLPLLFDAALPGAGTVRA 67
          EK+ ++K + +L LY  A      D+A P A  ++A
Sbjct: 18 EKQALKKLQASLKLY--AD-----DSA-P-ALAIKA 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00