Citrus Sinensis ID: 031422

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccHHHccccccccHHHHHHHHHHHHcccEEEEEccccccccEEEEEEEEcccccEEEEccccccccccccccccccccccccccEEEccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcHHHHccccEcccccHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEccccEccEEEEcccccccccEEEEEEcccccccEEEEccEEEEEEEEccc
Coil and Loop (DISEMBL)
MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFfqrakpykdhptILKMQELAKELGvvmpvsffeeannahynsiaiidadgsdlglyrkshipdgpgyqekfyfnpgdtgfKVFQTKFAKigvgkgfy
Flexible Loop (DISEMBL)
MEKGKRREVVVSAlqfactddvstNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY
Low Complexity Region (SEG)
MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY
Disordered region (IsUnstruct)
********VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG****
Disordered Region (DISOPRED)
******R***VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY
Disordered Region (DISEMBL)
********VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY
Disordered Region (DISPRO)
*****RREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q3HVN1	300	N-carbamoylputrescine ami	N/A	no	0.95	0.506	0.875	2e-76
Q9XGI9	300	N-carbamoylputrescine ami	N/A	no	0.95	0.506	0.868	3e-76
Q8VYF5	326	N-carbamoylputrescine ami	no	no	0.962	0.472	0.745	6e-75
Q93XI4	301	N-carbamoylputrescine ami	yes	no	0.956	0.508	0.784	4e-68
Q9UBR1	384	Beta-ureidopropionase OS=	yes	no	0.768	0.320	0.341	3e-11
Q5RBM6	384	Beta-ureidopropionase OS=	yes	no	0.775	0.322	0.328	3e-11
Q28IE5	276	Omega-amidase NIT2 OS=Xen	no	no	0.875	0.507	0.322	9e-11
Q6INI7	276	Omega-amidase NIT2-B OS=X	N/A	no	0.875	0.507	0.342	2e-10
Q6IR61	276	Omega-amidase NIT2-A OS=X	N/A	no	0.875	0.507	0.342	6e-10
Q8VC97	393	Beta-ureidopropionase OS=	yes	no	0.843	0.343	0.312	1e-09

>sp|Q3HVN1|AGUB_SOLTU N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1

 Score =  284 bits (726), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 133/152 (87%), Positives = 143/152 (94%)

Query: 5   KRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFF 64
           K R V V+ALQFACTDDVSTN+ATAERLVRAAH KGANIILIQELFEGYYFCQAQ+E+FF
Sbjct: 4   KNRLVTVAALQFACTDDVSTNVATAERLVRAAHQKGANIILIQELFEGYYFCQAQKEEFF 63

Query: 65  QRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI 124
            RAKPY  HPTI++MQ LAKELGVV+PVSFFEEANNAHYNS+AIIDADG+DLGLYRKSHI
Sbjct: 64  HRAKPYLGHPTIVRMQNLAKELGVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHI 123

Query: 125 PDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           PDGPGYQEKFYFNPGDTGFKVFQTK+AKIGV 
Sbjct: 124 PDGPGYQEKFYFNPGDTGFKVFQTKYAKIGVA 155

Involved in polyamine biosynthesis.
Solanum tuberosum (taxid: 4113)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 3

>sp|Q9XGI9|AGUB_SOLLC N-carbamoylputrescine amidase OS=Solanum lycopersicum GN=CPA PE=2 SV=1

 Score =  283 bits (724), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 132/152 (86%), Positives = 143/152 (94%)

Query: 5   KRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFF 64
           K R V V+ALQFACTDDVSTN+ATAERLVRAAH KGANIILIQELFEGYYFCQAQ+E+FF
Sbjct: 4   KNRLVTVAALQFACTDDVSTNVATAERLVRAAHQKGANIILIQELFEGYYFCQAQKEEFF 63

Query: 65  QRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI 124
            RAKPY  HPTI++MQ LAKELGVV+PVSFFEEANNAHYNS+AIIDADG+DLGLYRKSHI
Sbjct: 64  HRAKPYPGHPTIVRMQNLAKELGVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHI 123

Query: 125 PDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           PDGPGYQEK+YFNPGDTGFKVFQTK+AKIGV 
Sbjct: 124 PDGPGYQEKYYFNPGDTGFKVFQTKYAKIGVA 155

Involved in polyamine biosynthesis.

Solanum lycopersicum (taxid: 4081)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 3

>sp|Q8VYF5|AGUB_ARATH N-carbamoylputrescine amidase OS=Arabidopsis thaliana GN=CPA PE=1 SV=1

 Score =  279 bits (713), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 148/181 (81%), Gaps = 27/181 (14%)

Query: 3   KGKRREVVVSALQFACTDDVSTNLATAER---------------------------LVRA 35
           +G+RREVVVS+LQFAC+DD+STN+A AER                           LVR 
Sbjct: 4   EGRRREVVVSSLQFACSDDISTNVAAAERFVSLSSSLPLSNYQSLPSSSSFKFPYALVRE 63

Query: 36  AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95
           AH KGANIILIQELFEGYYFCQAQREDFF+RAKPYK+HPTI +MQ+LAKELGVV+PVSFF
Sbjct: 64  AHAKGANIILIQELFEGYYFCQAQREDFFKRAKPYKNHPTIARMQKLAKELGVVIPVSFF 123

Query: 96  EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
           EEAN AHYNSIAIIDADG+DLG+YRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV
Sbjct: 124 EEANTAHYNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 183

Query: 156 G 156
            
Sbjct: 184 A 184

Involved in polyamine biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 3

>sp|Q93XI4|AGUB_ORYSJ N-carbamoylputrescine amidase OS=Oryza sativa subsp. japonica GN=CPA PE=2 SV=1

 Score =  256 bits (654), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 120/153 (78%), Positives = 136/153 (88%)

Query: 4   GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDF 63
           G   +V V+A+QFACTD  S N+ TAERL+R AH KGANI+L+QELFEG YFCQAQR DF
Sbjct: 6   GAGSKVSVAAVQFACTDVESENVDTAERLIREAHKKGANIVLVQELFEGQYFCQAQRLDF 65

Query: 64  FQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSH 123
           FQRAKPYK +PTI++ Q+LAKEL VV+PVSFFEEANNAHYNS+AIIDADG+DLGLYRKSH
Sbjct: 66  FQRAKPYKGNPTIIRFQKLAKELEVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSH 125

Query: 124 IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           IPDGPGYQEKFYFNPGDTGFK F+TK+A IGVG
Sbjct: 126 IPDGPGYQEKFYFNPGDTGFKAFKTKYATIGVG 158

Involved in polyamine biosynthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 3

>sp|Q9UBR1|BUP1_HUMAN Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 6/129 (4%)

Query: 32  LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90
           +V  A   G NII  QE +   + FC  ++  + + A+  +D PT    Q+LAK   +V+
Sbjct: 103 IVEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKNHDMVV 162

Query: 91  PVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVF 146
            VS   E ++ H    +N+  +I   G+ LG  RK+HIP    + E  Y+  G+ G  VF
Sbjct: 163 -VSPILERDSEHGDVLWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVF 221

Query: 147 QTKFAKIGV 155
           QT+F +I V
Sbjct: 222 QTQFGRIAV 230

Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q5RBM6|BUP1_PONAB Beta-ureidopropionase OS=Pongo abelii GN=UPB1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 32  LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90
           +V  A   G NII  QE +   + FC  ++  + + A+  +D PT    Q+LAK   +V+
Sbjct: 103 IVEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKNHDMVV 162

Query: 91  PVSFFE---EANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQ 147
                E   E  +  +N+  +I   G+ LG  RK+HIP    + E  Y+  G+ G  VFQ
Sbjct: 163 VSPILERDSEHGDVLWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQ 222

Query: 148 TKFAKIGV 155
           T+F +I V
Sbjct: 223 TQFGRIAV 230

Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q28IE5|NIT2_XENTR Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 12/152 (7%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           +S +QF  +   S NL  A +L++ A  KGA I+ + E F   Y  +     +F      
Sbjct: 6   LSLVQFLVSPVKSENLNRACKLIKEAAQKGAQIVALPECFNSPYGTK-----YFPEYAEK 60

Query: 71  KDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDG 127
               +  ++ ++AKE G+ ++  S  EE +   YN+ A+   DG+ L  +RK H+   D 
Sbjct: 61  IPGESTERLSQVAKECGIYLIGGSIPEEDSGKLYNTCAVFGPDGTLLVKHRKIHLFDIDV 120

Query: 128 PG---YQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           PG   +QE    +PGD+ F VF+T + K+GVG
Sbjct: 121 PGKIRFQESETLSPGDS-FSVFETPYCKVGVG 151

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q6INI7|NIT2B_XENLA Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 12/152 (7%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           +S +QF  +   S NL  A +L++ A  KGA I+ + E F   Y  +     F + A+  
Sbjct: 6   LSLVQFLVSPVKSDNLNKACKLIKEAAQKGAQIVALPECFNSPYGTKY----FPEYAEKI 61

Query: 71  KDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDG 127
               T L + ++AKE G+ ++  S  EE +   YN+ A+   DG+ L  +RK H+   D 
Sbjct: 62  PGESTEL-LSQVAKECGIYLIGGSIPEEDSGKFYNTCAVFGPDGTLLVKHRKIHLFDIDV 120

Query: 128 PG---YQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           PG   +QE    +PGD+ F VF T + K+GVG
Sbjct: 121 PGKIRFQESETLSPGDS-FSVFDTPYCKVGVG 151

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q6IR61|NIT2A_XENLA Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE=2 SV=1

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           +S +QF  +   S NL  A +L++ A  KGA I+ + E F   Y        F + A+  
Sbjct: 6   LSLVQFLVSPVKSDNLNRACKLIKEAAQKGAQIVALPECFNSPY----GTTYFPEYAEKI 61

Query: 71  KDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDG 127
               T L + ++AKE G+ ++  S  EE     YN+ A+   DG+ L  +RK H+   D 
Sbjct: 62  PGESTEL-LSQVAKECGIYLIGGSIPEEDCGKLYNTCAVFGPDGTLLVKHRKIHLFDIDV 120

Query: 128 PG---YQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           PG   +QE    +PGD+ F VF T + K+GVG
Sbjct: 121 PGKIRFQESETLSPGDS-FSVFDTPYCKVGVG 151

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8VC97|BUP1_MOUSE Beta-ureidopropionase OS=Mus musculus GN=Upb1 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 6/141 (4%)

Query: 20  DDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILK 78
           + VS    + E +   A   G NII  QE +   + FC  ++  + + A+  +D  T   
Sbjct: 91  EQVSALHKSIEEIAEVAAMCGVNIICFQEAWNMPFAFCTREKLPWTEFAESAEDGLTTRF 150

Query: 79  MQELAKELGVVMPVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKF 134
            Q+LAK+  +V+ VS   E +  H    +N+  +I   G  +G  RK+HIP    + E  
Sbjct: 151 CQKLAKKHNMVV-VSPILERDREHGGVLWNTAVVISNSGLVMGKTRKNHIPRVGDFNEST 209

Query: 135 YFNPGDTGFKVFQTKFAKIGV 155
           Y+  G+ G  VFQT+F +I V
Sbjct: 210 YYMEGNLGHPVFQTQFGRIAV 230

Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
224131816	301	predicted protein [Populus trichocarpa]	0.968	0.514	0.916	3e-80
356543606	299	PREDICTED: N-carbamoylputrescine amidase	0.962	0.515	0.891	1e-77
18401429	299	N-carbamoylputrescine amidase [Arabidops	0.962	0.515	0.876	1e-77
358248586	299	uncharacterized protein LOC100787298 [Gl	0.962	0.515	0.891	1e-77
388494892	219	unknown [Medicago truncatula]	0.975	0.712	0.865	3e-77
357453113	301	N-carbamoylputrescine amidase [Medicago	0.975	0.518	0.865	4e-77
388497486	300	unknown [Lotus japonicus]	0.968	0.516	0.878	5e-77
356550099	299	PREDICTED: N-carbamoylputrescine amidase	0.962	0.515	0.884	5e-77
449492828	311	PREDICTED: N-carbamoylputrescine amidase	0.943	0.485	0.894	1e-76
449443458	300	PREDICTED: N-carbamoylputrescine amidase	0.943	0.503	0.894	1e-76

>gi|224131816|ref|XP_002328115.1| predicted protein [Populus trichocarpa] gi|118489609|gb|ABK96606.1| unknown [Populus trichocarpa x Populus deltoides] gi|222837630|gb|EEE75995.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 142/155 (91%), Positives = 150/155 (96%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           MEKGK REVVVSALQFACTDDV+ NLATAERLVRAAH KG+NIILIQELFEGYYFCQAQR
Sbjct: 1   MEKGKGREVVVSALQFACTDDVAANLATAERLVRAAHKKGSNIILIQELFEGYYFCQAQR 60

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           EDFFQRAKPYK HPTIL MQ+LAKELGVV+PVSFFEEANNAHYNSIA+IDADG+DLGLYR
Sbjct: 61  EDFFQRAKPYKGHPTILSMQKLAKELGVVIPVSFFEEANNAHYNSIAMIDADGADLGLYR 120

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
           KSHIPDGPGYQEKFYFNPGDTGF+VFQTKFAKIG+
Sbjct: 121 KSHIPDGPGYQEKFYFNPGDTGFRVFQTKFAKIGI 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543606|ref|XP_003540251.1| PREDICTED: N-carbamoylputrescine amidase-like [Glycine max]

 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/156 (89%), Positives = 150/156 (96%), Gaps = 2/156 (1%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           MEKG  R VVVSALQFACTDDVSTN+ATAERL+RAAH +GANIILIQELFEGYYFCQAQR
Sbjct: 1   MEKG--RTVVVSALQFACTDDVSTNIATAERLIRAAHKQGANIILIQELFEGYYFCQAQR 58

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
            DFFQRAKP+KDHPTIL+MQ+LAKELGVV+PVSFFEEANNAHYNSIAIID+DG+DLG+YR
Sbjct: 59  VDFFQRAKPHKDHPTILRMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDSDGTDLGIYR 118

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           KSHIPDGPGY+EKFYFNPGDTGFKVFQTKFAKIGV 
Sbjct: 119 KSHIPDGPGYEEKFYFNPGDTGFKVFQTKFAKIGVA 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401429|ref|NP_565650.1| N-carbamoylputrescine amidase [Arabidopsis thaliana] gi|20197650|gb|AAD15597.2| putative nitrilase [Arabidopsis thaliana] gi|21554187|gb|AAM63266.1| putative nitrilase [Arabidopsis thaliana] gi|222424030|dbj|BAH19976.1| AT2G27450 [Arabidopsis thaliana] gi|330252903|gb|AEC07997.1| N-carbamoylputrescine amidase [Arabidopsis thaliana]

 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 135/154 (87%), Positives = 148/154 (96%)

Query: 3   KGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRED 62
           +G+RREVVVS+LQFAC+DD+STN+A AERLVR AH KGANIILIQELFEGYYFCQAQRED
Sbjct: 4   EGRRREVVVSSLQFACSDDISTNVAAAERLVREAHAKGANIILIQELFEGYYFCQAQRED 63

Query: 63  FFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKS 122
           FF+RAKPYK+HPTI +MQ+LAKELGVV+PVSFFEEAN AHYNSIAIIDADG+DLG+YRKS
Sbjct: 64  FFKRAKPYKNHPTIARMQKLAKELGVVIPVSFFEEANTAHYNSIAIIDADGTDLGIYRKS 123

Query: 123 HIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           HIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 
Sbjct: 124 HIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVA 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248586|ref|NP_001240162.1| uncharacterized protein LOC100787298 [Glycine max] gi|255647785|gb|ACU24353.1| unknown [Glycine max]

 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/156 (89%), Positives = 149/156 (95%), Gaps = 2/156 (1%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           MEKG  R VVVSALQFACTDD+STN+ATAERLVRAAH +GANIILIQELFEGYYFCQAQR
Sbjct: 1   MEKG--RTVVVSALQFACTDDISTNVATAERLVRAAHKQGANIILIQELFEGYYFCQAQR 58

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           EDF QRAKP+KDHPTIL+MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLG+YR
Sbjct: 59  EDFIQRAKPHKDHPTILRMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGIYR 118

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           KSHIPDGPGY+EKFYFNPGDTGFKVFQTK AKIGV 
Sbjct: 119 KSHIPDGPGYEEKFYFNPGDTGFKVFQTKLAKIGVA 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494892|gb|AFK35512.1| unknown [Medicago truncatula]

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 135/156 (86%), Positives = 149/156 (95%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           M + K R+VVVSALQFACTDDVSTN+ TAERLVRAAH +GANI+LIQELFEGYYFCQAQR
Sbjct: 1   MAEDKGRKVVVSALQFACTDDVSTNVTTAERLVRAAHKQGANIVLIQELFEGYYFCQAQR 60

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           EDF QRAKPYKDHPTI+++Q+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLG+YR
Sbjct: 61  EDFIQRAKPYKDHPTIMRLQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGIYR 120

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           KSHIPDGPGY+EKFYFNPGDTGFKVFQTK+AKIGV 
Sbjct: 121 KSHIPDGPGYEEKFYFNPGDTGFKVFQTKYAKIGVA 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453113|ref|XP_003596833.1| N-carbamoylputrescine amidase [Medicago truncatula] gi|355485881|gb|AES67084.1| N-carbamoylputrescine amidase [Medicago truncatula]

 Score =  291 bits (746), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 135/156 (86%), Positives = 149/156 (95%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           M + K R+VVVSALQFACTDDVSTN+ TAERLVRAAH +GANI+LIQELFEGYYFCQAQR
Sbjct: 1   MAEDKGRKVVVSALQFACTDDVSTNVTTAERLVRAAHKQGANIVLIQELFEGYYFCQAQR 60

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           EDF QRAKPYKDHPTI+++Q+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLG+YR
Sbjct: 61  EDFIQRAKPYKDHPTIMRLQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGIYR 120

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           KSHIPDGPGY+EKFYFNPGDTGFKVFQTK+AKIGV 
Sbjct: 121 KSHIPDGPGYEEKFYFNPGDTGFKVFQTKYAKIGVA 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497486|gb|AFK36809.1| unknown [Lotus japonicus]

 Score =  291 bits (746), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 137/156 (87%), Positives = 149/156 (95%), Gaps = 1/156 (0%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           MEK K REV+VSALQF+CTDDVSTN+ATAERLVRAAH KGANI+LIQELFEG+YFCQAQR
Sbjct: 1   MEK-KGREVIVSALQFSCTDDVSTNVATAERLVRAAHSKGANIVLIQELFEGHYFCQAQR 59

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           EDFF RAKPY  HPTI++MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLG+YR
Sbjct: 60  EDFFHRAKPYNGHPTIMRMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGIYR 119

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           KSHIPDGPGY+EKFYFNPGDTGFKVFQTKFAKIGV 
Sbjct: 120 KSHIPDGPGYEEKFYFNPGDTGFKVFQTKFAKIGVA 155

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550099|ref|XP_003543427.1| PREDICTED: N-carbamoylputrescine amidase-like [Glycine max]

 Score =  291 bits (745), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 138/156 (88%), Positives = 149/156 (95%), Gaps = 2/156 (1%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           MEKG  R VVVSALQFACTDDVSTN+ATAERLVRAAH +GANIILIQELFEGYYFCQAQR
Sbjct: 1   MEKG--RTVVVSALQFACTDDVSTNVATAERLVRAAHKQGANIILIQELFEGYYFCQAQR 58

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           E+F QRAKP+KDHPTIL+MQ+LAKELGVV+PVSFFEEANNAHYNS AIIDADG+DLG+YR
Sbjct: 59  EEFIQRAKPHKDHPTILRMQKLAKELGVVIPVSFFEEANNAHYNSTAIIDADGTDLGIYR 118

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           KSHIPDGPGY+EKFYFNPGDTGFKVFQTKFAK+GV 
Sbjct: 119 KSHIPDGPGYEEKFYFNPGDTGFKVFQTKFAKVGVA 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492828|ref|XP_004159114.1| PREDICTED: N-carbamoylputrescine amidase-like [Cucumis sativus]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/151 (89%), Positives = 144/151 (95%)

Query: 6   RREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQ 65
           R+ V VSA+QFACTD++STN+ TAERLVR+AH KGANIILIQELFEGYYFCQAQREDF Q
Sbjct: 5   RKAVAVSAMQFACTDEISTNVNTAERLVRSAHAKGANIILIQELFEGYYFCQAQREDFIQ 64

Query: 66  RAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP 125
           RAKPYK HPTIL+MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP
Sbjct: 65  RAKPYKGHPTILRMQQLAKELGVVIPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP 124

Query: 126 DGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           DGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 
Sbjct: 125 DGPGYQEKFYFNPGDTGFKVFQTKFAKIGVA 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443458|ref|XP_004139494.1| PREDICTED: N-carbamoylputrescine amidase-like [Cucumis sativus]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/151 (89%), Positives = 144/151 (95%)

Query: 6   RREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQ 65
           R+ V VSA+QFACTD++STN+ TAERLVR+AH KGANIILIQELFEGYYFCQAQREDF Q
Sbjct: 5   RKAVAVSAMQFACTDEISTNVNTAERLVRSAHAKGANIILIQELFEGYYFCQAQREDFIQ 64

Query: 66  RAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP 125
           RAKPYK HPTIL+MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP
Sbjct: 65  RAKPYKGHPTILRMQQLAKELGVVIPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP 124

Query: 126 DGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           DGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 
Sbjct: 125 DGPGYQEKFYFNPGDTGFKVFQTKFAKIGVA 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2038623	326	NLP1 "nitrilase-like protein 1	0.775	0.380	0.911	8.6e-71
UNIPROTKB|Q48Q56	292	PSPPH_0152 "Carbon-nitrogen hy	0.937	0.513	0.633	1.4e-46
TIGR_CMR|GSU_1027	294	GSU_1027 "glycosyl hydrolase,	0.9	0.489	0.438	7.3e-27
TIGR_CMR|CJE_1025	290	CJE_1025 "hydrolase, carbon-ni	0.775	0.427	0.392	3.5e-20
UNIPROTKB|A7MBE8	384	UPB1 "Uncharacterized protein"	0.781	0.325	0.351	1.2e-12
FB|FBgn0037513	386	pyd3 "pyd3" [Drosophila melano	0.775	0.321	0.320	2.6e-12
UNIPROTKB|E2QT84	384	UPB1 "Uncharacterized protein"	0.781	0.325	0.351	9e-12
ZFIN|ZDB-GENE-030131-1380	384	upb1 "ureidopropionase, beta"	0.775	0.322	0.335	9e-12
UNIPROTKB|J9P8R1	386	UPB1 "Uncharacterized protein"	0.781	0.323	0.351	9.1e-12
TAIR|locus:2173348	408	BETA-UP "AT5G64370" [Arabidops	0.756	0.296	0.356	1.3e-11

TAIR|locus:2038623 NLP1 "nitrilase-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
 Identities = 113/124 (91%), Positives = 120/124 (96%)

Query:    32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91
             LVR AH KGANIILIQELFEGYYFCQAQREDFF+RAKPYK+HPTI +MQ+LAKELGVV+P
Sbjct:    60 LVREAHAKGANIILIQELFEGYYFCQAQREDFFKRAKPYKNHPTIARMQKLAKELGVVIP 119

Query:    92 VSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFA 151
             VSFFEEAN AHYNSIAIIDADG+DLG+YRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFA
Sbjct:   120 VSFFEEANTAHYNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFA 179

Query:   152 KIGV 155
             KIGV
Sbjct:   180 KIGV 183

GO:0006596 "polyamine biosynthetic process" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA;ISS

GO:0050126 "N-carbamoylputrescine amidase activity" evidence=IEA;IDA

GO:0009446 "putrescine biosynthetic process" evidence=TAS

UNIPROTKB|Q48Q56 PSPPH_0152 "Carbon-nitrogen hydrolase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 95/150 (63%), Positives = 115/150 (76%)

Query:     7 REVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQR 66
             R V V+A Q AC+ D+  N+ TAE+LVR A  KGA IILIQELFE  YFCQ    D+ Q 
Sbjct:     3 RIVSVAATQMACSWDLEANIETAEKLVREAAAKGAQIILIQELFETPYFCQKPNPDYLQL 62

Query:    67 AKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPD 126
             A   + +  I   Q+LAKEL VV+P+SFFE A  A +N+IAIIDADG++LG+YRKSHIPD
Sbjct:    63 ATTIESNVAIKHFQKLAKELQVVLPISFFELAGRARFNTIAIIDADGTNLGIYRKSHIPD 122

Query:   127 GPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
             GPGY EK+YFNPGDTGFKV+QT++AKIGVG
Sbjct:   123 GPGYHEKYYFNPGDTGFKVWQTRYAKIGVG 152

GO:0005737 "cytoplasm" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

GO:0009446 "putrescine biosynthetic process" evidence=ISS

GO:0050126 "N-carbamoylputrescine amidase activity" evidence=ISS

TIGR_CMR|GSU_1027 GSU_1027 "glycosyl hydrolase, family 10" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 64/146 (43%), Positives = 86/146 (58%)

Query:    11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
             V+ +Q +CT D   NLA +   +R A   GA ++++QEL  G YFCQ +    F  A+P 
Sbjct:     6 VALVQQSCTADKDLNLAKSIENIRKASVLGAKLVVLQELHTGPYFCQNEDTAHFDLAEPI 65

Query:    71 KDHPTILKMQELAKELGVVMPVSFFEE-ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPG 129
                PT   +  +AKE GVV+  S FE  A   ++N+  + + DGS  G YRK HIPD PG
Sbjct:    66 PG-PTTELLGGVAKEFGVVLVSSLFERRAPGLYHNTAVVFEKDGSMAGTYRKMHIPDDPG 124

Query:   130 YQEKFYFNPGDTGFKVFQTKFAKIGV 155
             Y EKFYF PGD GF+  +T   K+GV
Sbjct:   125 YYEKFYFTPGDLGFEPIRTSVGKLGV 150

GO:0006807 "nitrogen compound metabolic process" evidence=ISS

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=ISS

TIGR_CMR|CJE_1025 CJE_1025 "hydrolase, carbon-nitrogen family" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 51/130 (39%), Positives = 75/130 (57%)

Query:    28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY-KDHPTILKMQELAKEL 86
             T E  +  A  +GA ++ + EL +  YFCQ++  DFF  A  Y KD   +     +A++ 
Sbjct:    21 TCE-FIEEASKQGAELVCLGELHQSEYFCQSENVDFFDYANDYEKD---VKFWANIARKN 76

Query:    87 GVVMPVSFFEEANNAHYNSIAII-DADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
              +V+  S FE+ +   Y++ A++ + DGS  G YRK HIPD P + EKFYF PGD GF+ 
Sbjct:    77 QIVLIASLFEKRSAGLYHNTAVVFEKDGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEP 136

Query:   146 FQTKFAKIGV 155
               T   K+GV
Sbjct:   137 INTSLGKLGV 146

GO:0008152 "metabolic process" evidence=ISS

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=ISS

UNIPROTKB|A7MBE8 UPB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 46/131 (35%), Positives = 73/131 (55%)

Query:    30 ERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88
             E +V  A   G NII  QE +   + FC  ++  + + A+  +D PTI   QELA++ G+
Sbjct:   101 EAVVEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTIKFCQELARKHGM 160

Query:    89 VMPVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFK 144
             V+ VS   E ++ H    +N+  ++ + G+ LG  RK+HIP    + E  Y+  G+ G  
Sbjct:   161 VV-VSPVLERDSDHGDVLWNTAVVVASSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHP 219

Query:   145 VFQTKFAKIGV 155
             VFQT+F +I V
Sbjct:   220 VFQTQFGRIAV 230

GO:0003837 "beta-ureidopropionase activity" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

FB|FBgn0037513 pyd3 "pyd3" [Drosophila melanogaster (taxid:7227)]

 Score = 171 (65.3 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 41/128 (32%), Positives = 68/128 (53%)

Query:    32 LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90
             +++AA   G NI+  QE +   + FC  ++  + + A+  ++ PT   + ELAK   +V+
Sbjct:   104 MIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVI 163

Query:    91 PVSFFE---EANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQ 147
               S  E   E     +N+  +I   G  LG +RK+HIP    + E  Y+  G+TG  VF+
Sbjct:   164 IHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFE 223

Query:   148 TKFAKIGV 155
             T+F K+ V
Sbjct:   224 TEFGKLAV 231

GO:0003837 "beta-ureidopropionase activity" evidence=ISS;IDA;NAS

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IGI

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=IC

UNIPROTKB|E2QT84 UPB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 46/131 (35%), Positives = 69/131 (52%)

Query:    30 ERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88
             E +V  A   G NII  QE +   + FC  ++  + + A+  +D PT    Q+LAK+  +
Sbjct:   101 EAIVEVAAVCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKKHDM 160

Query:    89 VMPVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFK 144
             V+ VS   E +  H    +N+  +I   G+ LG  RK+HIP    + E  Y+  G+ G  
Sbjct:   161 VV-VSPILERDREHGDILWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHP 219

Query:   145 VFQTKFAKIGV 155
             VFQT+F KI V
Sbjct:   220 VFQTQFGKIAV 230

GO:0003837 "beta-ureidopropionase activity" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

ZFIN|ZDB-GENE-030131-1380 upb1 "ureidopropionase, beta" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 43/128 (33%), Positives = 70/128 (54%)

Query:    32 LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE--LGV 88
             +V  A   G NI+  QE +   + FC  +RE + + A+  +D  T     +LAK+  + V
Sbjct:   103 MVEVAAMCGVNIVCFQEAWTMPFAFCTREREPWTEFAESAEDGLTTRFCIQLAKKHNMVV 162

Query:    89 VMPVSFFEEANNAH-YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQ 147
             V P+   +E +    +N+  ++  +G+ LG  RK+HIP    + E  Y+  G+TG +VFQ
Sbjct:   163 VSPILERDEIHGGTLWNTAVVVSNNGNVLGKTRKNHIPRVGDFNESTYYMEGNTGHRVFQ 222

Query:   148 TKFAKIGV 155
             T+F KI V
Sbjct:   223 TQFGKIAV 230

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|J9P8R1 UPB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 9.1e-12, P = 9.1e-12
 Identities = 46/131 (35%), Positives = 69/131 (52%)

Query:    30 ERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88
             E +V  A   G NII  QE +   + FC  ++  + + A+  +D PT    Q+LAK+  +
Sbjct:   103 EAIVEVAAVCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKKHDM 162

Query:    89 VMPVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFK 144
             V+ VS   E +  H    +N+  +I   G+ LG  RK+HIP    + E  Y+  G+ G  
Sbjct:   163 VV-VSPILERDREHGDILWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHP 221

Query:   145 VFQTKFAKIGV 155
             VFQT+F KI V
Sbjct:   222 VFQTQFGKIAV 232

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

TAIR|locus:2173348 BETA-UP "AT5G64370" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 46/129 (35%), Positives = 71/129 (55%)

Query:    32 LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90
             ++ AA   G NI+ +QE +   + FC  +R  + + A+P     T   +QELAK+  +V+
Sbjct:   121 IIDAAGVAGVNILCLQEAWTMPFAFCTRERR-WCEFAEPVDGESTKF-LQELAKKYNMVI 178

Query:    91 PVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVF 146
              VS   E +  H    +N+  II  +G+ +G +RK+HIP    + E  Y+  GDTG  VF
Sbjct:   179 -VSPILERDIDHGEVLWNTAVIIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGDTGHPVF 237

Query:   147 QTKFAKIGV 155
             +T F KI V
Sbjct:   238 ETVFGKIAV 246

GO:0003837 "beta-ureidopropionase activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006212 "uracil catabolic process" evidence=IMP

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93XI4	AGUB_ORYSJ	3, ., 5, ., 1, ., 5, 3	0.7843	0.9562	0.5083	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1.53	0.914
3rd Layer	3.5.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00660157	N-carbamolyputrescine amidohydrolase (EC-3.5.1.53) (301 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_820017	agmatine iminohydrolase (EC-3.5.3.12) (381 aa)	•	•	•			•	•		0.994
	estExt_Genewise1_v1.C_LG_IV0804	arginine decarboxylase (EC-4.1.1.19) (731 aa)	•						•		0.682
	gw1.164.182.1	hypothetical protein (484 aa)	•						•		0.509
	eugene3.29010002	Predicted protein (267 aa)	•						•		0.442
	gw1.III.614.1	GMP synthetase (EC-6.3.5.2) (434 aa)	•						•		0.434
	grail3.0003090402	SubName- Full=Putative uncharacterized protein; (193 aa)	•								0.433
	eugene3.80240002	Predicted protein (250 aa)							•		0.426
	estExt_fgenesh4_pm.C_LG_X0357	spermidine synthase (335 aa)	•					•	•		0.423
	grail3.0009003101	spermidine synthase (335 aa)	•					•	•		0.413
	gw1.I.1992.1	dihydropyrimidinase (EC-3.5.2.2) (504 aa)	•					•	•		0.402

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
PLN02747	296	PLN02747, PLN02747, N-carbamolyputrescine amidase	1e-111
TIGR03381	279	TIGR03381, agmatine_aguB, N-carbamoylputrescine am	1e-100
cd07573	284	cd07573, CPA, N-carbamoylputrescine amidohydrolase	3e-92
cd07568	287	cd07568, ML_beta-AS_like, mammalian-like beta-alan	7e-41
cd07197	253	cd07197, nitrilase, Nitrilase superfamily, includi	2e-34
COG0388	274	COG0388, COG0388, Predicted amidohydrolase [Genera	2e-31
pfam00795	172	pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase	1e-28
cd07572	265	cd07572, nit, Nit1, Nit 2, and related proteins, a	4e-26
cd07580	268	cd07580, nitrilase_2, Uncharacterized subgroup of	1e-25
cd07577	259	cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642	1e-23
cd07584	258	cd07584, nitrilase_6, Uncharacterized subgroup of	8e-20
cd07585	261	cd07585, nitrilase_7, Uncharacterized subgroup of	1e-18
cd07581	255	cd07581, nitrilase_3, Uncharacterized subgroup of	7e-18
cd07569	302	cd07569, DCase, N-carbamyl-D-amino acid amidohydro	8e-17
cd07587	363	cd07587, ML_beta-AS, mammalian-like beta-alanine s	1e-16
PLN02798	286	PLN02798, PLN02798, nitrilase	1e-16
cd07576	254	cd07576, R-amidase_like, Pseudomonas sp	1e-15
cd07583	253	cd07583, nitrilase_5, Uncharacterized subgroup of	1e-14
cd07586	269	cd07586, nitrilase_8, Uncharacterized subgroup of	3e-14
cd07579	279	cd07579, nitrilase_1_R2, Second nitrilase domain o	2e-13
cd07564	297	cd07564, nitrilases_CHs, Nitrilases, cyanide hydra	7e-12
PLN00202	405	PLN00202, PLN00202, beta-ureidopropionase	1e-11
PRK13981	540	PRK13981, PRK13981, NAD synthetase; Provisional	2e-10
cd07574	280	cd07574, nitrilase_Rim1_like, Uncharacterized subg	1e-08
cd07570	261	cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe	5e-08
cd07578	258	cd07578, nitrilase_1_R1, First nitrilase domain of	4e-07
TIGR04048	301	TIGR04048, nitrile_sll0784, putative nitrilase, sl	5e-06
cd07566	295	cd07566, ScNTA1_like, Saccharomyces cerevisiae N-t	3e-05
PRK02628	679	PRK02628, nadE, NAD synthetase; Reviewed	3e-04

>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase

 Score =  317 bits (813), Expect = e-111
 Identities = 131/154 (85%), Positives = 141/154 (91%)

Query: 3   KGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRED 62
            G  R+VVV+ALQFAC+DD + N+  AERLVR AH KGANIILIQELFEGYYFCQAQRED
Sbjct: 1   MGMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQRED 60

Query: 63  FFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKS 122
           FFQRAKPY+ HPTI +MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLGLYRKS
Sbjct: 61  FFQRAKPYEGHPTIARMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKS 120

Query: 123 HIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           HIPDGPGYQEKFYFNPGDTGFKVF TKFAKIGV 
Sbjct: 121 HIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVA 154

Length = 296

>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase

 Score =  288 bits (738), Expect = e-100
 Identities = 103/148 (69%), Positives = 123/148 (83%)

Query: 9   VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAK 68
           V V+ALQ AC+DDV TN+A AERLVR A  +GA IIL+ ELFEG YFC+ Q ED+F  A+
Sbjct: 1   VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQ 60

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
           P + HP I + Q LAKELGVV+PVSFFE+A NA+YNS+A+IDADGS LG+YRKSHIPDGP
Sbjct: 61  PVEGHPAIKRFQALAKELGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGP 120

Query: 129 GYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           GYQEKFYF PGDTGFKV+ T++ +IGVG
Sbjct: 121 GYQEKFYFRPGDTGFKVWDTRYGRIGVG 148

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one [Central intermediary metabolism, Polyamine biosynthesis]. Length = 279

>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

 Score =  269 bits (689), Expect = 3e-92
 Identities = 88/149 (59%), Positives = 107/149 (71%), Gaps = 1/149 (0%)

Query: 9   VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAK 68
           V V+ +Q AC++D   NLA AE LVR A  +GA I+ +QELFE  YFCQ + ED+F  A+
Sbjct: 1   VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAE 60

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANN-AHYNSIAIIDADGSDLGLYRKSHIPDG 127
           P    PT  + Q LAKELGVV+PVS FE+  N  +YNS  +IDADGS LG+YRK HIPD 
Sbjct: 61  PPIPGPTTARFQALAKELGVVIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDD 120

Query: 128 PGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           PGY EKFYF PGDTGFKVF T++ +IGV 
Sbjct: 121 PGYYEKFYFTPGDTGFKVFDTRYGRIGVL 149

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer. Length = 284

>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

 Score =  138 bits (348), Expect = 7e-41
 Identities = 56/127 (44%), Positives = 78/127 (61%), Gaps = 1/127 (0%)

Query: 30  ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89
             ++R A   GA I+ +QE+F G YFC  Q   +++ A+   + PT  +   LAKE  +V
Sbjct: 33  VTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMV 92

Query: 90  MPVSFFE-EANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQT 148
           + +  +E E     YN+ A+IDADG+ LG YRK+HIP   G+ EKFYF PG+ G+ VF T
Sbjct: 93  LILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDT 152

Query: 149 KFAKIGV 155
            F KIGV
Sbjct: 153 AFGKIGV 159

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 287

>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

 Score =  120 bits (302), Expect = 2e-34
 Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 7/146 (4%)

Query: 11  VSALQFACTD-DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKP 69
           ++A+Q A    DV  NLA A RL++ A  +GA++I++ ELF   Y  ++ +ED       
Sbjct: 1   IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDL--DLAE 58

Query: 70  YKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPG 129
             D PT+  + ELAKELG+ +     E+  +  YN+  +ID DG  +G YRK H+ D   
Sbjct: 59  ELDGPTLEALAELAKELGIYIVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFDF-- 116

Query: 130 YQEKFYFNPGDTGFKVFQTKFAKIGV 155
             E+ YF+PGD  F VF T   KIG+
Sbjct: 117 -GERRYFSPGDE-FPVFDTPGGKIGL 140

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy. Length = 253

>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only]

 Score =  113 bits (285), Expect = 2e-31
 Identities = 55/149 (36%), Positives = 79/149 (53%), Gaps = 5/149 (3%)

Query: 9   VVVSALQFA-CTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRA 67
           + V+A Q A    D + NLA   RL+R A  +GA++++  ELF   Y C+     F + A
Sbjct: 3   MRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDD--LFLEEA 60

Query: 68  KPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDG 127
                  T+  +  LA+E GV++ V          YN+ A+ID DG  LG YRK H+ D 
Sbjct: 61  AAEAGEETLEFLAALAEEGGVII-VGGPLPEREKLYNNAALIDPDGEILGKYRKLHLFD- 118

Query: 128 PGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
             Y+E+ +F PGD G  VF+T   KIG+ 
Sbjct: 119 AFYEERRFFTPGDEGVVVFETDGGKIGLL 147

Length = 274

>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase

 Score =  103 bits (259), Expect = 1e-28
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 3/135 (2%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQ 80
           D+  NL     L+  A  +GA+++++ ELF   Y   A                T+  + 
Sbjct: 13  DLEANLQKLLELIEEAARQGADLVVLPELFIPGYAHGATEYL---ELAEAIPGETLQFLS 69

Query: 81  ELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGD 140
            LA++ G+ +     E+     YN++ +ID DG  LG YRK H+     + E+  F PG 
Sbjct: 70  ALARKNGITVVAGIPEKDGGGLYNTLVLIDPDGELLGKYRKRHLVPVGEWVERPLFGPGG 129

Query: 141 TGFKVFQTKFAKIGV 155
             F VF T   K+G+
Sbjct: 130 ATFPVFDTPVGKLGL 144

This family contains hydrolases that break carbon-nitrogen bonds. The family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. Nitrilase-related proteins generally have a conserved E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha sandwich proteins. Length = 172

>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

 Score = 99.0 bits (248), Expect = 4e-26
 Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 16/156 (10%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           V+ +Q   T D   NLA A+ L+  A  +GA ++++ E F                A+  
Sbjct: 2   VALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPG---GTDAFKLALAEEE 58

Query: 71  KDHPTILKMQELAKELGVV-----MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSH-- 123
            D PT+  + ELAKE G+      +P    ++ +   YN+  + D DG  +  YRK H  
Sbjct: 59  GDGPTLQALSELAKEHGIWLVGGSIPER--DDDDGKVYNTSLVFDPDGELVARYRKIHLF 116

Query: 124 ---IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
              +P G  Y+E     PGD    V  T F KIG+G
Sbjct: 117 DVDVPGGISYRESDTLTPGDE-VVVVDTPFGKIGLG 151

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10. Length = 265

>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 98.2 bits (245), Expect = 1e-25
 Identities = 54/147 (36%), Positives = 78/147 (53%), Gaps = 9/147 (6%)

Query: 11  VSALQFA-CTDDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAK 68
           V+ +QF     D+  NLA +  L+R A   GAN++++ EL   GY F    R++ F  A+
Sbjct: 2   VACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVF--ESRDEAFALAE 59

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
              D  +     ELA ELG+ +   F E   +  YNS  ++  DG  +G YRK+H+ +  
Sbjct: 60  EVPDGASTRAWAELAAELGLYIVAGFAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN-- 116

Query: 129 GYQEKFYFNPGDTGFKVFQTKFAKIGV 155
             +EK  F PGD G  VF T F +IGV
Sbjct: 117 --EEKLLFEPGDLGLPVFDTPFGRIGV 141

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 268

>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 92.7 bits (231), Expect = 1e-23
 Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 11/136 (8%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKM 79
           +V  NL   E L++   G  A++I++ ELF  GY F    +E+    A+   D PT   +
Sbjct: 13  EVEKNLKKVESLIK---GVEADLIVLPELFNTGYAF--TSKEEVASLAESIPDGPTTRFL 67

Query: 80  QELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPG 139
           QELA+E G  +     E   +  YNS  ++  +G  +G+YRK+H+     Y+EK +F PG
Sbjct: 68  QELARETGAYIVAGLPERDGDKFYNSAVVVGPEG-YIGIYRKTHL----FYEEKLFFEPG 122

Query: 140 DTGFKVFQTKFAKIGV 155
           DTGF+VF     +IGV
Sbjct: 123 DTGFRVFDIGDIRIGV 138

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 259

>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 82.4 bits (204), Expect = 8e-20
 Identities = 54/149 (36%), Positives = 74/149 (49%), Gaps = 11/149 (7%)

Query: 11  VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKP 69
           V+ +Q      DV  NL  A  L + A  +GA++I   EL    Y         ++ ++P
Sbjct: 2   VALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEP 61

Query: 70  YKDHPTILKMQELAKELGVVMPVSFFEEANNAH--YNSIAIIDADGSDLGLYRKSHIPDG 127
             D PT+    ELAKELGV +   F E+       YNS  +ID +G  LG+YRK H+   
Sbjct: 62  -IDGPTVRLFSELAKELGVYIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHL--- 117

Query: 128 PGYQ-EKFYFNPGDTGFKVFQTKFAKIGV 155
             +  EK YF  G+  + VF T F KIGV
Sbjct: 118 --WGLEKQYFREGEQ-YPVFDTPFGKIGV 143

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 258

>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 13/148 (8%)

Query: 11  VSALQFACTD-DVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAK 68
           ++ +QF     D + NLA   R  R A  +GA ++   E+   GY   +A       R  
Sbjct: 2   IALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRA-----LSREA 56

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
              D P+   + +LA+  G+ +     E+A +  YN+  +   DG  +  YRK H     
Sbjct: 57  EVPDGPSTQALSDLARRYGLTILAGLIEKAGDRPYNTYLVCLPDGL-VHRYRKLH----L 111

Query: 129 GYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
             +E  Y   GD  + VF T   + G+ 
Sbjct: 112 FRREHPYIAAGDE-YPVFATPGVRFGIL 138

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 261

>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 77.2 bits (191), Expect = 7e-18
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           V+  QFA + D   NL    RL+  A   GA++++  E     +      +D+ + A+P 
Sbjct: 1   VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARF--GDGLDDYARVAEP- 57

Query: 71  KDHPTILKMQELAKELGVVMPVSFFEEANNAH-YNSIAIIDADGSDLGLYRKSHIPDGPG 129
            D P +  +  LA+ELG+ +    FE A +   YN++ ++  DG  + +YRK H+ D  G
Sbjct: 58  LDGPFVSALARLARELGITVVAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFG 117

Query: 130 YQEKFYFNPGDTGFKV-FQTKFAKIGV 155
           ++E     PGD    V F     K+G+
Sbjct: 118 FRESDTVAPGDELPPVVFVVGGVKVGL 144

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 255

>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

 Score = 75.0 bits (185), Expect = 8e-17
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 24/169 (14%)

Query: 7   REVVVSALQFACTDDVSTNLATAERLV---RAAHGKGANIILIQEL-----FEGYYFC-Q 57
           R+V+++A Q        T  +   RL+     A  +GA +++  EL     F  +YF  +
Sbjct: 2   RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDE 61

Query: 58  AQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNA----HYNSIAIIDADG 113
           A+ + FF+   P   +P    + + AKELG+   + + E   +      +N+  ++D  G
Sbjct: 62  AELDSFFETEMP---NPETQPLFDRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSG 118

Query: 114 SDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIG 154
             +G YRK H+P     +        EK YF PGD GF VF+     +G
Sbjct: 119 KIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVFRVPGGIMG 167

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers. Length = 302

>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 30  ERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88
           ++++ AA   G NII  QE +   + FC  ++  + + A+  +D PT    QELAK+  +
Sbjct: 93  KKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNM 152

Query: 89  VMPVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFK 144
           V+ VS   E +  H    +N+  +I   G+ LG  RK+HIP    + E  Y+  G+TG  
Sbjct: 153 VI-VSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHP 211

Query: 145 VFQTKFAKIGV 155
           VF+T+F KI V
Sbjct: 212 VFETQFGKIAV 222

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 363

>gnl|CDD|215428 PLN02798, PLN02798, nitrilase

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 13/153 (8%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           V+  Q   T+D++ N AT  RL + A   GA ++ + E F    F   +  +    A+P 
Sbjct: 13  VAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFS---FIGDKDGESLAIAEPL 69

Query: 71  KDHPTILKMQELAKELGVVMPVSFFEE--ANNAH-YNSIAIIDADGSDLGLYRKSH---- 123
            D P + + + LA+E G+ + +  F+E   +++H YN+  +ID  G     YRK H    
Sbjct: 70  -DGPIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDV 128

Query: 124 -IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
            +P GP  +E  +  PG T      +   ++G+
Sbjct: 129 DVPGGPVLKESSFTAPGKT-IVAVDSPVGRLGL 160

Length = 286

>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 11/139 (7%)

Query: 11  VSALQFACTD-DVSTNLATAERLVRAAHGKGANIILIQELF-EGYYFCQAQREDFFQRAK 68
           ++  Q    D DV+ NLA  +     A   GA++++  ELF  GY       +   + A+
Sbjct: 2   LALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGY----NIGDAVARLAE 57

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
           P  D P +  ++ +A+  G+ + V + E A  A YN+  +ID DG+ L  YRK+H+    
Sbjct: 58  P-ADGPALQALRAIARRHGIAIVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHL---F 113

Query: 129 GYQEKFYFNPGDTGFKVFQ 147
           G  E+  F PGD  F V +
Sbjct: 114 GDSERAAFTPGD-RFPVVE 131

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer. Length = 254

>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 68.3 bits (168), Expect = 1e-14
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)

Query: 11  VSALQFA-CTDDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAK 68
           ++ +Q      D   N+   E L+  A   GA++I++ E++  GY+      +D ++ A 
Sbjct: 2   IALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYF-----LDDLYELAD 56

Query: 69  PYKDHPTILKMQELAKELGVVMPV--SFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPD 126
                 T+  + ELAK+ GV + V  S  E+     YN+  +ID DG  +  YRK H   
Sbjct: 57  EDGG-ETVSFLSELAKKHGVNI-VAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIH-LF 113

Query: 127 GPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
           G    E  Y   GD   +VF+    K+G+
Sbjct: 114 GLM-GEDKYLTAGDEL-EVFELDGGKVGL 140

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 253

>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 12/148 (8%)

Query: 11  VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAK 68
           V+  Q      DV  NL     ++  A  +GA++++  EL   GY       +  ++ A 
Sbjct: 2   VAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNL----GDLVYEVAM 57

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAH-YNSIAIIDADGSDLGLYRKSHIPDG 127
              D P +  + E +  + VV    F EE  +   YNS A ++ DG  + ++RK ++P  
Sbjct: 58  H-ADDPRLQALAEASGGICVV--FGFVEEGRDGRFYNSAAYLE-DGRVVHVHRKVYLPTY 113

Query: 128 PGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
             ++E  YF PG    + F T+F + GV
Sbjct: 114 GLFEEGRYFAPGSH-LRAFDTRFGRAGV 140

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 269

>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 65.7 bits (160), Expect = 2e-13
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 15/149 (10%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKP 69
           ++  QFA T D++ NLAT +RL   A   GA +++  EL   G         D    A+ 
Sbjct: 2   IAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLD-------DPASEAES 54

Query: 70  YKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPG 129
               P +  ++ LA+ L + +   F E   +  YNS  ++  +G  +G YRK+H+     
Sbjct: 55  -DTGPAVSALRRLARRLRLYLVAGFAEADGDGLYNSAVLVGPEGL-VGTYRKTHL----I 108

Query: 130 YQEKFYFNPGDTGFKVFQTKFAKIGVGKG 158
             E+ +  PGDT + V+     ++G+  G
Sbjct: 109 EPERSWATPGDT-WPVYDLPLGRVGLLIG 136

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 279

>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

 Score = 61.3 bits (150), Expect = 7e-12
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 20/139 (14%)

Query: 29  AERLVRAAHGKGANIILIQELFEGYY----FCQA---QREDFFQRAKPYK-----DHPTI 76
           A RL+  A   GA +++  E F   Y    +  A    RE F   A+ Y+     D P +
Sbjct: 22  ACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELF---ARYYENSVEVDGPEL 78

Query: 77  LKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYF 136
            ++ E A+E G+ + +   E      YN+  +ID DG  LG +RK      P + E+  +
Sbjct: 79  ERLAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLK----PTHAERLVW 134

Query: 137 NPGD-TGFKVFQTKFAKIG 154
             GD +G +V  T   ++G
Sbjct: 135 GQGDGSGLRVVDTPIGRLG 153

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that NIT3 may produce IAA during the early stages of germination, and that NIT3 may produce IAA during embryo development and maturation. AthNIT4 has a strong substrate specificity for the nitrile, beta-cyano-L-alanine (Ala(CN)), an intermediate of cyanide detoxification. AthNIT4 has both a nitrilase activity and a nitrile hydratase (NHase) activity, which generate aspartic acid and asparagine respectively from Ala(CN). NHase catalyzes the hydration of nitriles to their corresponding amides. This subgroup belongs to a larger nitrilase superfamily comprised of belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 1. Length = 297

>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 8/129 (6%)

Query: 32  LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90
           ++ AA   G NI+ +QE +   + FC  ++  + + A+P     T   +QELA++  +V+
Sbjct: 118 MIDAAGAAGVNILCLQEAWTMPFAFCTREKR-WCEFAEPVDGESTKF-LQELARKYNMVI 175

Query: 91  PVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVF 146
            VS   E +  H    +N+  +I  +G+ +G +RK+HIP    + E  Y+  G+TG  VF
Sbjct: 176 -VSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVF 234

Query: 147 QTKFAKIGV 155
           +T F KI V
Sbjct: 235 ETAFGKIAV 243

Length = 405

>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 24/144 (16%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELF-EGYYFCQAQRED------FFQRAKPYKDH 73
           D++ N A        A   GA+++L  ELF  GY       ED      F    +     
Sbjct: 14  DIAGNAAKILAAAAEAADAGADLLLFPELFLSGY-----PPEDLLLRPAFLAACEAA--- 65

Query: 74  PTILKMQELAKEL--GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ 131
                ++ LA     G  + V          YN+ A++D  G  L  YRK  +P+   + 
Sbjct: 66  -----LERLAAATAGGPAVLVGHPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYGVFD 119

Query: 132 EKFYFNPGDTGFKVFQTKFAKIGV 155
           EK YF PG     V + K  +IGV
Sbjct: 120 EKRYFAPGPEPG-VVELKGVRIGV 142

Length = 540

>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 21/157 (13%)

Query: 11  VSALQFACT--DDVSTNLATAERLVRAAHGKGANIILIQELF---------EGYYFCQAQ 59
           V+A Q+            A  E  V  A G GA++++  E F         E        
Sbjct: 3   VAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEA 62

Query: 60  REDFFQRAKPYKDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGL 118
                     Y          ELA++ G+ ++  S     +   YN   +   DG+ +G 
Sbjct: 63  IRALAALTPDYVAL-----FSELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGT-IGH 116

Query: 119 YRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
             K H+   P  +E++  + GD   KVF T   KIG+
Sbjct: 117 QDKLHMT--PFEREEWGISGGD-KLKVFDTDLGKIGI 150

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 280

>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

 Score = 50.2 bits (121), Expect = 5e-08
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 23/144 (15%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELF-EGYYFCQAQREDFFQRAKPYKDHPTILK- 78
           D+  N       +R A  +GA++++  EL   GY       ED   R       P  L+ 
Sbjct: 13  DLEGNAEKILEAIREAKAQGADLVVFPELSLTGY-----PPEDLLLR-------PDFLEA 60

Query: 79  ----MQELAKEL---GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ 131
               ++ELA       + + V      +   YN+ A++  +G  LG+  K  +P+   + 
Sbjct: 61  AEEALEELAAATADLDIAVVVGLPLRHDGKLYNAAAVLQ-NGKILGVVPKQLLPNYGVFD 119

Query: 132 EKFYFNPGDTGFKVFQTKFAKIGV 155
           EK YF PGD    V   K  +IGV
Sbjct: 120 EKRYFTPGDKP-DVLFFKGLRIGV 142

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to classes 7 and 8. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Mycobacterium tuberculosis glutamine-dependent NAD+ synthetase forms a homooctamer. Length = 261

>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 12/149 (8%)

Query: 11  VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAK 68
            +A+QF     +   N+     L   A   GA +I+  E+   GY  C   R +     +
Sbjct: 3   AAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGY--CWYDRAEIAPFVE 60

Query: 69  PYKDHPTILKMQELAKELG--VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPD 126
           P    PT  +  ELA+E    +V+ +   +  +  +YNS  +I   G  +G +RK+H   
Sbjct: 61  PIPG-PTTARFAELAREHDCYIVVGLPEVDSRSGIYYNSAVLIGPSGV-IGRHRKTH--- 115

Query: 127 GPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
            P   E  +   GD G +VF T+  +I +
Sbjct: 116 -PYISEPKWAADGDLGHQVFDTEIGRIAL 143

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 258

>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 33/168 (19%)

Query: 7   REVVVSALQFACTDDVSTNLATAERLVRA---AHGKGANIILIQELFEGYYFCQAQREDF 63
           R V  +A+Q   +  + +   T  +++ A   A GKG  +I+  E F  YY        +
Sbjct: 1   RIVRAAAVQ--ISPVLFSLEGTLAKVLEAIAEAAGKGVQLIVFPETFVPYY-------PY 51

Query: 64  FQRAKPY----KDH------------PTILKMQELAKELGVVMPVSFFEEANNAHYNSIA 107
           F   +P     K+H            P    + E A+E G+V+ +   E  + + YN+  
Sbjct: 52  FSFVQPPVLMGKEHLRLYEQAVVVPGPVTDAVAEAAREHGMVVVLGVNERDHGSLYNTQL 111

Query: 108 IIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGD-TGFKVFQTKFAKIG 154
           I DADG  L L R+   P    Y E+  +  GD  G KV  T   ++G
Sbjct: 112 IFDADGE-LVLKRRKITPT---YHERMVWGQGDGAGLKVVDTAVGRVG 155

This family represents a subfamily of a C-N bond-cleaving hydrolases (see pfam00795). Members occur as part of a cluster of genes in a probable biosynthetic cluster that contains a radical SAM protein, an N-acetyltransferase, a flavoprotein, several proteins of unknown function, and usually a glycosyltransferase. Members are closely related to a characterized aliphatic nitrilase from Rhodopseudomonas rhodochrous J1, for which an active site Cys was found at position 165 [Unknown function, Enzymes of unknown specificity]. Length = 301

>gnl|CDD|143590 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 28/158 (17%)

Query: 11  VSALQFAC-TDDVSTNLATAERLVRAAHG----KGANIILIQEL-FEGYYFCQAQREDFF 64
           ++ LQ       V  NL+ A  L+         K  +I+++ EL   GY F         
Sbjct: 2   IACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNF------HSL 55

Query: 65  QRAKPY----KDHPTILKMQELAKELGVVMPVSFFEEANNAH---YNSIAIIDADGSDLG 117
           +  KPY       P+    +E+AK+    + + + E+ + +    YNS  ++D +G  + 
Sbjct: 56  EHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVF 115

Query: 118 LYRKSHI---PDGPGYQEKFYFNPGDTGFKVFQTKFAK 152
            YRKS +    +  G +E    NPG  GF+ F   FAK
Sbjct: 116 NYRKSFLYYTDEEWGCEE----NPG--GFQTFPLPFAK 147

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3. Length = 295

>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 14/125 (11%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRED-FFQRAKPYKDHPTILKM 79
           D + N A    L R A   G  + +  EL    Y C    +D F Q          +  +
Sbjct: 26  DPAFNAARILALARRAADDGVALAVFPELSLSGYSC----DDLFLQDTLLDAVEDALATL 81

Query: 80  QELAKELGVV----MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFY 135
            E + +L  +     P+       +  YN   +I   G  LG+  KS++P+   + EK +
Sbjct: 82  VEASADLDPLLVVGAPLRV----RHRLYNCAVVI-HRGRILGVVPKSYLPNYREFYEKRW 136

Query: 136 FNPGD 140
           F PGD
Sbjct: 137 FAPGD 141

Length = 679

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
TIGR03381	279	agmatine_aguB N-carbamoylputrescine amidase. Membe	100.0
PLN02747	296	N-carbamolyputrescine amidase	100.0
cd07568	287	ML_beta-AS_like mammalian-like beta-alanine syntha	100.0
cd07587	363	ML_beta-AS mammalian-like beta-alanine synthase (b	100.0
cd07573	284	CPA N-carbamoylputrescine amidohydrolase (CPA) (cl	100.0
PLN00202	405	beta-ureidopropionase	100.0
PF00795	186	CN_hydrolase: Carbon-nitrogen hydrolase The Prosit	100.0
PLN02504	346	nitrilase	100.0
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	100.0
cd07579	279	nitrilase_1_R2 Second nitrilase domain of an uncha	100.0
PRK10438	256	C-N hydrolase family amidase; Provisional	100.0
cd07584	258	nitrilase_6 Uncharacterized subgroup of the nitril	100.0
cd07564	297	nitrilases_CHs Nitrilases, cyanide hydratase (CH)s	100.0
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	100.0
PLN02798	286	nitrilase	100.0
cd07569	302	DCase N-carbamyl-D-amino acid amidohydrolase (DCas	100.0
cd07570	261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	100.0
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	100.0
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	100.0
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	99.98
cd07578	258	nitrilase_1_R1 First nitrilase domain of an unchar	99.98
cd07575	252	Xc-1258_like Xanthomonas campestris XC1258 and rel	99.98
cd07585	261	nitrilase_7 Uncharacterized subgroup of the nitril	99.98
cd07577	259	Ph0642_like Pyrococcus horikoshii Ph0642 and relat	99.98
cd07567	299	biotinidase_like biotinidase and vanins (class 4 n	99.97
COG0388	274	Predicted amidohydrolase [General function predict	99.97
cd07586	269	nitrilase_8 Uncharacterized subgroup of the nitril	99.97
cd07197	253	nitrilase Nitrilase superfamily, including nitrile	99.97
cd07566	295	ScNTA1_like Saccharomyces cerevisiae N-terminal am	99.97
PRK02628	679	nadE NAD synthetase; Reviewed	99.97
PRK13981	540	NAD synthetase; Provisional	99.97
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	99.97
PLN02339	700	NAD+ synthase (glutamine-hydrolysing)	99.97
cd07571	270	ALP_N-acyl_transferase Apolipoprotein N-acyl trans	99.97
cd07574	280	nitrilase_Rim1_like Uncharacterized subgroup of th	99.97
cd07582	294	nitrilase_4 Uncharacterized subgroup of the nitril	99.97
PRK13287	333	amiF formamidase; Provisional	99.96
PRK13286	345	amiE acylamide amidohydrolase; Provisional	99.96
TIGR00546	391	lnt apolipoprotein N-acyltransferase. This enzyme	99.95
KOG0807	295	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.94
KOG0806	298	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.93
PRK00302	505	lnt apolipoprotein N-acyltransferase; Reviewed	99.92
PRK12291	418	apolipoprotein N-acyltransferase; Reviewed	99.92
KOG0808	387	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.91
KOG0805	337	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.91
PRK13825	388	conjugal transfer protein TraB; Provisional	99.86
COG0815	518	Lnt Apolipoprotein N-acyltransferase [Cell envelop	99.75
KOG2303	706	consensus Predicted NAD synthase, contains CN hydr	99.51
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	92.61
cd07567	299	biotinidase_like biotinidase and vanins (class 4 n	90.8
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	90.8
cd07584	258	nitrilase_6 Uncharacterized subgroup of the nitril	90.09
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	88.67
PRK13286	345	amiE acylamide amidohydrolase; Provisional	88.35
cd07585	261	nitrilase_7 Uncharacterized subgroup of the nitril	88.19
cd07587	363	ML_beta-AS mammalian-like beta-alanine synthase (b	88.17
KOG0807	295	consensus Carbon-nitrogen hydrolase [Amino acid tr	88.11
cd07568	287	ML_beta-AS_like mammalian-like beta-alanine syntha	87.31
PRK15018	245	1-acyl-sn-glycerol-3-phosphate acyltransferase; Pr	87.19
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	85.91
PLN00202	405	beta-ureidopropionase	85.15
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	85.1
TIGR03381	279	agmatine_aguB N-carbamoylputrescine amidase. Membe	85.05
cd07197	253	nitrilase Nitrilase superfamily, including nitrile	85.04
cd07586	269	nitrilase_8 Uncharacterized subgroup of the nitril	85.0
cd07582	294	nitrilase_4 Uncharacterized subgroup of the nitril	84.82
cd07570	261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	84.57
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	82.73
COG0388	274	Predicted amidohydrolase [General function predict	82.59
PLN02798	286	nitrilase	82.14
cd07577	259	Ph0642_like Pyrococcus horikoshii Ph0642 and relat	81.88
PLN02504	346	nitrilase	80.93
cd07579	279	nitrilase_1_R2 Second nitrilase domain of an uncha	80.64
cd07573	284	CPA N-carbamoylputrescine amidohydrolase (CPA) (cl	80.56

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase

Probab=100.00  E-value=4.5e-36  Score=223.20  Aligned_cols=152  Identities=68%  Similarity=1.138  Sum_probs=134.3

Q ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422            9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (160)
Q Consensus         9 ~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   88 (160)
                      ||||++|+++..|++.|++++.+++++|+++++|||||||++++||.+.+....+.+.+++...+..++.++++|+++++
T Consensus         1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   80 (279)
T TIGR03381         1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGV   80 (279)
T ss_pred             CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCc
Confidence            68999999988899999999999999999999999999999999997655433445555554446789999999999999


Q ss_pred             EEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +|++|+++++++++||++++++++|+++..|+|+||+..+.+.|..+|++|+..+.+|+++++|+|++||||
T Consensus        81 ~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D  152 (279)
T TIGR03381        81 VIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWD  152 (279)
T ss_pred             EEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEEcC
Confidence            999999988888999999999999999999999999876566788899999854789999999999999998

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.

>PLN02747 N-carbamolyputrescine amidase

Probab=100.00  E-value=3.4e-35  Score=220.26  Aligned_cols=157  Identities=83%  Similarity=1.321  Sum_probs=136.6

Q ss_pred             CCCcccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHH
Q 031422            4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA   83 (160)
Q Consensus         4 ~~~~~~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   83 (160)
                      +|.+++|||++|+++..|++.|++++.+++++|++.|+|||||||++++||.+.....++.+.++....+..++.++++|
T Consensus         2 ~~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   81 (296)
T PLN02747          2 GMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLA   81 (296)
T ss_pred             CCCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHH
Confidence            46678999999999878999999999999999999999999999999999876533334555555443357889999999


Q ss_pred             HHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        84 ~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      ++++++|++|.+++.++++||++++++++|+++.+|+|.||+..+.+.|..+|.+|+..+++|+++++|+|++||||
T Consensus        82 ~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~~~~~~~~~rig~~IC~D  158 (296)
T PLN02747         82 KELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAICWD  158 (296)
T ss_pred             HHcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCCeeEEcCCccEEEEEEcc
Confidence            99999999999888888999999999999999999999999876566788889999744689999999999999998

>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=100.00  E-value=1.1e-34  Score=216.60  Aligned_cols=154  Identities=38%  Similarity=0.666  Sum_probs=132.8

Q ss_pred             cccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHH
Q 031422            7 REVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK   78 (160)
Q Consensus         7 ~~~~va~~Q~~~~--------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   78 (160)
                      +++|||++|+++.        .+.+.|++++.+++++|+++|+|||||||++++||.+.+....+.+.++...+++.++.
T Consensus         2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   81 (287)
T cd07568           2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKR   81 (287)
T ss_pred             ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHH
Confidence            5799999999974        78899999999999999999999999999999998654322234444554334678999


Q ss_pred             HHHHHHHcCcEEEecccccc-CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEe
Q 031422           79 MQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGK  157 (160)
Q Consensus        79 l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~I  157 (160)
                      |+++|+++++++++|+.++. ++++||++++|+++|+++.+|+|+||++.+.+.|..+|.+|+..+.+|+++++|+|++|
T Consensus        82 l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~~~f~~~~~~iG~~I  161 (287)
T cd07568          82 FAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIGVYI  161 (287)
T ss_pred             HHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCCceEEcCCceEEEEE
Confidence            99999999999999988764 57899999999999999999999999988778888899999844689999999999999


Q ss_pred             ccC
Q 031422          158 GFY  160 (160)
Q Consensus       158 Cy~  160 (160)
                      |||
T Consensus       162 CyD  164 (287)
T cd07568         162 CYD  164 (287)
T ss_pred             Eec
Confidence            998

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=100.00  E-value=1.4e-34  Score=221.43  Aligned_cols=156  Identities=29%  Similarity=0.407  Sum_probs=132.6

Q ss_pred             CCcccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccc-hhhHhhhcccCCCChH
Q 031422            5 KRREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPT   75 (160)
Q Consensus         5 ~~~~~~va~~Q~~~~--------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~-~~~~~~~~~~~~~~~~   75 (160)
                      ..+.+|||++|+++.        .|.+.|++++.+++++|+++|+|||||||++++||..... ...+.+.+++..+++.
T Consensus        60 ~~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~  139 (363)
T cd07587          60 PPRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPT  139 (363)
T ss_pred             CCceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChH
Confidence            345799999999862        4899999999999999999999999999999999853221 1124445554334688


Q ss_pred             HHHHHHHHHHcCcEEEecccccc---CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCee
Q 031422           76 ILKMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAK  152 (160)
Q Consensus        76 ~~~l~~~a~~~~i~i~~g~~~~~---~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~r  152 (160)
                      ++.|+++|++++++|++|+.+++   ++++||++++|+++|++++.|+|+||+..+.+.|+.+|.+|+..+++|+++++|
T Consensus       140 ~~~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~gr  219 (363)
T cd07587         140 TKFCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGK  219 (363)
T ss_pred             HHHHHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCce
Confidence            99999999999999999988875   368999999999999999999999999877788999999998546899999999


Q ss_pred             EEEEeccC
Q 031422          153 IGVGKGFY  160 (160)
Q Consensus       153 ig~~ICy~  160 (160)
                      ||++||||
T Consensus       220 iG~~ICyD  227 (363)
T cd07587         220 IAVNICYG  227 (363)
T ss_pred             EEEEEecc
Confidence            99999998

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

Probab=100.00  E-value=3.6e-33  Score=208.13  Aligned_cols=152  Identities=58%  Similarity=0.954  Sum_probs=132.5

Q ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422            9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (160)
Q Consensus         9 ~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   88 (160)
                      ||||++|+++..|++.|++++.+.+++|+++++|||||||++++||.+.+....+.+.+++...+..++.++++|+++++
T Consensus         1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i   80 (284)
T cd07573           1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGV   80 (284)
T ss_pred             CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCE
Confidence            68999999998899999999999999999999999999999999997665433445555522346788999999999999


Q ss_pred             EEEecccccc-CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        89 ~i~~g~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      ++++|+.++. ++++||++++++++|+++.+|+|.||+..+.+.|..+|.+|+..+.+|+++++|+|++||||
T Consensus        81 ~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D  153 (284)
T cd07573          81 VIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWD  153 (284)
T ss_pred             EEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCCceEecCCceEEEEEecc
Confidence            9999998774 46899999999999999999999999876667788899999833799999999999999998

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.

>PLN00202 beta-ureidopropionase

Probab=100.00  E-value=5.2e-33  Score=215.00  Aligned_cols=154  Identities=27%  Similarity=0.434  Sum_probs=131.7

Q ss_pred             CcccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHH
Q 031422            6 RREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL   77 (160)
Q Consensus         6 ~~~~~va~~Q~~~~--------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   77 (160)
                      .+++|||++|+++.        .+.+.|++++.+++++|+++|+|||||||++++||........+.+.+++. .+...+
T Consensus        84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~-~g~~~~  162 (405)
T PLN00202         84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-DGESTK  162 (405)
T ss_pred             CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhC-CCHHHH
Confidence            56799999999972        479999999999999999999999999999999985321111244555554 368899


Q ss_pred             HHHHHHHHcCcEEEecccccc---CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEE
Q 031422           78 KMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIG  154 (160)
Q Consensus        78 ~l~~~a~~~~i~i~~g~~~~~---~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig  154 (160)
                      .++++|++++++|++|+.+++   ++++|||+++++++|+++++|+|+||++.+.+.|+.+|.+|+...++|+++++|+|
T Consensus       163 ~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~~vf~t~~gkiG  242 (405)
T PLN00202        163 FLQELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIA  242 (405)
T ss_pred             HHHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCceEEEeCCCeEE
Confidence            999999999999999987753   35799999999999999999999999988888899999999864689999999999


Q ss_pred             EEeccC
Q 031422          155 VGKGFY  160 (160)
Q Consensus       155 ~~ICy~  160 (160)
                      ++||||
T Consensus       243 v~ICYD  248 (405)
T PLN00202        243 VNICYG  248 (405)
T ss_pred             EEEccc
Confidence            999998

>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []

Probab=100.00  E-value=3.4e-33  Score=196.31  Aligned_cols=150  Identities=33%  Similarity=0.459  Sum_probs=127.8

Q ss_pred             EEEEEeCCC---CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccccccc----ccchhhHhhhcccCCCChHHHHHHHH
Q 031422           10 VVSALQFAC---TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFC----QAQREDFFQRAKPYKDHPTILKMQEL   82 (160)
Q Consensus        10 ~va~~Q~~~---~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~   82 (160)
                      |||++|+++   ..+.+.|++++.+++++|+++++|||||||++++||..    .....++...+... .+..++.+.++
T Consensus         1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   79 (186)
T PF00795_consen    1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPL-DGPYLERLAEL   79 (186)
T ss_dssp             EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHS-TSHHHHHHHHH
T ss_pred             CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhcccc-ccHHHHHHHHH
Confidence            799999995   57899999999999999999999999999999999832    33334455555543 26899999999


Q ss_pred             HHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcc-cceeecCCCCCceeEEe-----CCeeEEEE
Q 031422           83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-EKFYFNPGDTGFKVFQT-----KFAKIGVG  156 (160)
Q Consensus        83 a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~-e~~~~~~g~~~~~v~~~-----~~~rig~~  156 (160)
                      ++++++.+++|+++++++++||++++++++|+++.+|+|+||+|.+.+. |..+|.+|....+++++     +|+|+|++
T Consensus        80 a~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~g~~ig~~  159 (186)
T PF00795_consen   80 AKENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFPVFETPVFDFGGGRIGVL  159 (186)
T ss_dssp             HHHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESEEEEETETEETTEEEEEE
T ss_pred             HHhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeeccceeeeeecceeeeccceEEEE
Confidence            9999999999999999999999999999999999999999999988888 88889988544566665     47999999


Q ss_pred             eccC
Q 031422          157 KGFY  160 (160)
Q Consensus       157 ICy~  160 (160)
                      ||||
T Consensus       160 ICyd  163 (186)
T PF00795_consen  160 ICYD  163 (186)
T ss_dssp             EGGG
T ss_pred             EEcc
Confidence            9998

They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....

>PLN02504 nitrilase

Probab=100.00  E-value=1.6e-32  Score=209.16  Aligned_cols=149  Identities=23%  Similarity=0.330  Sum_probs=126.6

Q ss_pred             cccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccch------------h---hHhhhcccC
Q 031422            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR------------E---DFFQRAKPY   70 (160)
Q Consensus         7 ~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~------------~---~~~~~~~~~   70 (160)
                      .+||||++|+++ ..|.+.|++++.+++++|+++|+|||||||++++||+.....            .   .+...+...
T Consensus        23 ~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  102 (346)
T PLN02504         23 STVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDV  102 (346)
T ss_pred             CceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhcccC
Confidence            568999999998 578999999999999999999999999999999999752111            0   122334333


Q ss_pred             CCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCC-CceeEEeC
Q 031422           71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTK  149 (160)
Q Consensus        71 ~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~-~~~v~~~~  149 (160)
                       .++.++.|+++|++++++|++|++++.++++||++++|+++|+++.+|+|.|+..    .|..+|.+|.. .+++|+++
T Consensus       103 -~g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~g~~~~vf~~~  177 (346)
T PLN02504        103 -PGPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGDGSTIPVYDTP  177 (346)
T ss_pred             -CCHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCCCCCCceEEcC
Confidence             3678999999999999999999988888899999999999999999999998754    58888988862 36899999


Q ss_pred             CeeEEEEeccC
Q 031422          150 FAKIGVGKGFY  160 (160)
Q Consensus       150 ~~rig~~ICy~  160 (160)
                      ++|+|++||||
T Consensus       178 ~griG~lICyD  188 (346)
T PLN02504        178 IGKIGAVICWE  188 (346)
T ss_pred             CceEEEEEecc
Confidence            99999999998

>cd07576 R-amidase_like Pseudomonas sp

Probab=100.00  E-value=1.2e-32  Score=202.17  Aligned_cols=143  Identities=29%  Similarity=0.467  Sum_probs=126.0

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (160)
Q Consensus        10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   88 (160)
                      |||++|+++ ..+++.|++++.+++++|+++|+|||||||++++||...+...   +.+... .+...+.++++++++++
T Consensus         1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~---~~~~~~-~~~~~~~l~~~a~~~~~   76 (254)
T cd07576           1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVA---RLAEPA-DGPALQALRAIARRHGI   76 (254)
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhh---hhhccc-CChHHHHHHHHHHHcCC
Confidence            699999999 6899999999999999999999999999999999997654321   122222 35789999999999999


Q ss_pred             EEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      ++++|++++.++++||++++++++|+++.+|+|.||++.   .|..+|.+|+. +.+|+++++|+|++||||
T Consensus        77 ~ii~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~---~E~~~~~~G~~-~~v~~~~~~kig~~IC~D  144 (254)
T cd07576          77 AIVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGD---SERAAFTPGDR-FPVVELRGLRVGLLICYD  144 (254)
T ss_pred             EEEEeccccCCCceEEEEEEECCCCCEeeEEEeeccCCc---chhhhccCCCC-ceEEEECCeEEEEEEeec
Confidence            999999988888999999999999999999999999862   57778999997 799999999999999998

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=2.1e-32  Score=203.56  Aligned_cols=138  Identities=29%  Similarity=0.481  Sum_probs=121.9

Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcE
Q 031422           10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV   89 (160)
Q Consensus        10 ~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~   89 (160)
                      |||++|+++..|++.|++++.+++++|+++++|||||||++++||...      ...++.. .+..++.|+++|++++++
T Consensus         1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~------~~~~~~~-~~~~~~~l~~lA~~~~i~   73 (279)
T cd07579           1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDP------ASEAESD-TGPAVSALRRLARRLRLY   73 (279)
T ss_pred             CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCCh------HHhcccC-CCHHHHHHHHHHHHcCeE
Confidence            699999999669999999999999999999999999999999998632      1122322 357899999999999999


Q ss_pred             EEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        90 i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +++|++++.++++||++++++++| ++..|+|.||++    .|..+|.+|+. +++|+++++|+|++||||
T Consensus        74 iv~G~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~----~E~~~f~~G~~-~~v~~~~~~kiG~~ICyD  138 (279)
T cd07579          74 LVAGFAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE----PERSWATPGDT-WPVYDLPLGRVGLLIGHD  138 (279)
T ss_pred             EEEeceEccCCcEEEEEEEEeCCe-eEEEEecccCCC----cchhhccCCCC-CeeEEcCceeEEEEEecc
Confidence            999999888889999999999888 679999999986    47789999987 799999999999999998

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK10438 C-N hydrolase family amidase; Provisional

Probab=100.00  E-value=2.2e-32  Score=201.20  Aligned_cols=141  Identities=16%  Similarity=0.215  Sum_probs=116.1

Q ss_pred             cccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHH
Q 031422            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE   85 (160)
Q Consensus         7 ~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   85 (160)
                      .+||||++|+++ ..|++.|++++.++++++  +++|||||||++++||...+.    .   +....++..+.|+++|++
T Consensus         2 ~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~----~---~~~~~~~~~~~l~~~A~~   72 (256)
T PRK10438          2 SGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAA----A---SSLPQDDVVAWMTAKAQQ   72 (256)
T ss_pred             CCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccch----h---hccccchHHHHHHHHHHH
Confidence            358999999998 579999999999999976  699999999999999975421    1   111124678899999999


Q ss_pred             cCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        86 ~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +++.++++..+..++++|||+++++++|. +..|+|+||++.  +.|..+|.+|+. +++|+++++|+|++||||
T Consensus        73 ~~~~i~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~iG~~ICyD  143 (256)
T PRK10438         73 TNALIAGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNA-RVIVEWRGWRILPLVCYD  143 (256)
T ss_pred             cCeEEEEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCC-ceEEEECCEEEEEEEEee
Confidence            99865444445556778999999999997 579999999753  368889999997 799999999999999998

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=2.8e-32  Score=200.77  Aligned_cols=145  Identities=37%  Similarity=0.578  Sum_probs=125.7

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (160)
Q Consensus        10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   88 (160)
                      |||++|+++ ..|++.|++++++++++|+++++|||||||++++||.+........+.+... .+...+.++++|+++++
T Consensus         1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~i   79 (258)
T cd07584           1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPI-DGPTVRLFSELAKELGV   79 (258)
T ss_pred             CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCC-CCcHHHHHHHHHHHcCe
Confidence            699999998 5899999999999999999999999999999999997654433333344433 35788999999999999


Q ss_pred             EEEeccccccC--CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           89 VMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        89 ~i~~g~~~~~~--~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      ++++|++++.+  +++||++++++++|+++..|+|.||++    .|..+|.+|+. +++|+++++|+|++||||
T Consensus        80 ~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~-~~~~~~~~~~~g~~IC~D  148 (258)
T cd07584          80 YIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQ-YPVFDTPFGKIGVMICYD  148 (258)
T ss_pred             EEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCC-CeeEEcCCceEEEEEEcC
Confidence            99999987643  689999999999999999999999975    47778999987 799999999999999998

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

Probab=100.00  E-value=2.9e-32  Score=204.51  Aligned_cols=147  Identities=27%  Similarity=0.391  Sum_probs=125.3

Q ss_pred             cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccch-------hh---HhhhcccCCCChHHH
Q 031422            9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR-------ED---FFQRAKPYKDHPTIL   77 (160)
Q Consensus         9 ~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~-------~~---~~~~~~~~~~~~~~~   77 (160)
                      ||||++|+++ +.|++.|++++.+++++|+++++|+|||||++++||+..++.       ..   +.+.+.+. .+.+++
T Consensus         1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   79 (297)
T cd07564           1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEV-DGPELE   79 (297)
T ss_pred             CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCC-CCHHHH
Confidence            6899999987 589999999999999999999999999999999999754321       11   22333332 367899


Q ss_pred             HHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCC-CceeEEeCCeeEEEE
Q 031422           78 KMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTKFAKIGVG  156 (160)
Q Consensus        78 ~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~-~~~v~~~~~~rig~~  156 (160)
                      .|+++|++++++|++|++++.++++||++++++++|+++..|+|+||..    .|..+|.+|+. .+++|+++++|+|++
T Consensus        80 ~l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~----~E~~~~~~g~~~~~~v~~~~~~kig~~  155 (297)
T cd07564          80 RLAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH----AERLVWGQGDGSGLRVVDTPIGRLGAL  155 (297)
T ss_pred             HHHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCCc----hhhhhcccCCCCCceEEecCCceEEEE
Confidence            9999999999999999988878899999999999999999999999754    57778888763 368999999999999


Q ss_pred             eccC
Q 031422          157 KGFY  160 (160)
Q Consensus       157 ICy~  160 (160)
                      ||||
T Consensus       156 ICyD  159 (297)
T cd07564         156 ICWE  159 (297)
T ss_pred             EEhh
Confidence            9998

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=3.3e-32  Score=199.91  Aligned_cols=143  Identities=27%  Similarity=0.429  Sum_probs=124.6

Q ss_pred             EEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422           10 VVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (160)
Q Consensus        10 ~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   88 (160)
                      |||++|+++. .|++.|++++.+++++|+++|+|||||||++++||.+.+.    ...+.+. .+...+.++++++++++
T Consensus         1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~----~~~~~~~-~~~~~~~l~~~a~~~~~   75 (253)
T cd07583           1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDL----YELADED-GGETVSFLSELAKKHGV   75 (253)
T ss_pred             CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhH----Hhhhccc-CchHHHHHHHHHHHcCc
Confidence            6999999994 8999999999999999999999999999999999975432    1122322 46889999999999999


Q ss_pred             EEEeccc-cccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           89 VMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        89 ~i~~g~~-~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      ++++|+. ++.++++||++++++++|+++..|+|+||++.  +.|..+|.+|+. +++|+++++|+|++||||
T Consensus        76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~-~~v~~~~~~rig~~IC~D  145 (253)
T cd07583          76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDE-LEVFELDGGKVGLFICYD  145 (253)
T ss_pred             EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCC-ceEEEeCCeEEEEEEEec
Confidence            9999965 55678999999999999999999999999874  357788999997 799999999999999998

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PLN02798 nitrilase

Probab=100.00  E-value=5.2e-32  Score=202.16  Aligned_cols=151  Identities=27%  Similarity=0.415  Sum_probs=126.1

Q ss_pred             CCCcccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccc-ccccccccchhhHhhhcccCCCChHHHHHHHH
Q 031422            4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELF-EGYYFCQAQREDFFQRAKPYKDHPTILKMQEL   82 (160)
Q Consensus         4 ~~~~~~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   82 (160)
                      +|..+||||++|+++..|++.|++++++++++|+++++|||||||++ ++|+....    ..+.++.. .+...+.|+++
T Consensus         6 ~~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~----~~~~~~~~-~~~~~~~l~~~   80 (286)
T PLN02798          6 TAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGE----SLAIAEPL-DGPIMQRYRSL   80 (286)
T ss_pred             cccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchh----hhhhcccC-CCHHHHHHHHH
Confidence            36678999999999888999999999999999999999999999984 56765332    23334433 35789999999


Q ss_pred             HHHcCcEEEec-cccc--cCCeeeEEEEEEcCCCCEeEEeeeccCCCC-----CCcccceeecCCCCCceeEEeCCeeEE
Q 031422           83 AKELGVVMPVS-FFEE--ANNAHYNSIAIIDADGSDLGLYRKSHIPDG-----PGYQEKFYFNPGDTGFKVFQTKFAKIG  154 (160)
Q Consensus        83 a~~~~i~i~~g-~~~~--~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~-----~~~~e~~~~~~g~~~~~v~~~~~~rig  154 (160)
                      |+++++++++| .+++  .++++||++++++++|+++..|+|+||++.     ..+.|..+|.+|+. +.+|+++++|+|
T Consensus        81 A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~k~g  159 (286)
T PLN02798         81 ARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKT-IVAVDSPVGRLG  159 (286)
T ss_pred             HHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCe-eeEEecCCceEE
Confidence            99999999887 4454  457899999999999999999999999532     23457788999987 799999999999


Q ss_pred             EEeccC
Q 031422          155 VGKGFY  160 (160)
Q Consensus       155 ~~ICy~  160 (160)
                      ++||||
T Consensus       160 ~~IC~D  165 (286)
T PLN02798        160 LTVCYD  165 (286)
T ss_pred             EEEEEc
Confidence            999998

>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

Probab=100.00  E-value=4.1e-32  Score=204.13  Aligned_cols=154  Identities=26%  Similarity=0.390  Sum_probs=124.5

Q ss_pred             cccEEEEEeCCC-CC--CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccc---hhhHhhhcccCCCChHHHHHH
Q 031422            7 REVVVSALQFAC-TD--DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ---REDFFQRAKPYKDHPTILKMQ   80 (160)
Q Consensus         7 ~~~~va~~Q~~~-~~--~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~l~   80 (160)
                      +++|||++|+++ ..  +.+.|++++.+.+++|+++|+|||||||++++||.....   ..+.....+....++..+.++
T Consensus         2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (302)
T cd07569           2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLF   81 (302)
T ss_pred             ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHH
Confidence            468999999987 33  789999999999999999999999999999999854211   111221112112357888999


Q ss_pred             HHHHHcCcEEEecccccc-CC---eeeEEEEEEcCCCCEeEEeeeccCCCCCCc--------ccceeecCCCCCceeEEe
Q 031422           81 ELAKELGVVMPVSFFEEA-NN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGY--------QEKFYFNPGDTGFKVFQT  148 (160)
Q Consensus        81 ~~a~~~~i~i~~g~~~~~-~~---~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~--------~e~~~~~~g~~~~~v~~~  148 (160)
                      ++|+++++++++|++++. ++   ++||++++|+++|+++.+|+|+||++.+++        .|..+|.+|+..+++|++
T Consensus        82 ~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~~~  161 (302)
T cd07569          82 DRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVFRV  161 (302)
T ss_pred             HHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCceEec
Confidence            999999999999998753 34   899999999999999999999999875432        367789999933799999


Q ss_pred             CCeeEEEEeccC
Q 031422          149 KFAKIGVGKGFY  160 (160)
Q Consensus       149 ~~~rig~~ICy~  160 (160)
                      +++|+|++||||
T Consensus       162 ~~~rig~~IC~D  173 (302)
T cd07569         162 PGGIMGMCICND  173 (302)
T ss_pred             CCceEEEEEeec
Confidence            999999999998

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

Probab=100.00  E-value=2e-32  Score=201.89  Aligned_cols=144  Identities=24%  Similarity=0.327  Sum_probs=121.5

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchh--hHhhhcccCCCChHHHHHHHHHHHc
Q 031422           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRE--DFFQRAKPYKDHPTILKMQELAKEL   86 (160)
Q Consensus        10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~a~~~   86 (160)
                      |||++|+++ ..|++.|++++.+.+++|+++|+|||||||++++||...+...  .+.+.     ....++.|.+.++++
T Consensus         1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~   75 (261)
T cd07570           1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEA-----AEEALEELAAATADL   75 (261)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHH-----HHHHHHHHHHhcccC
Confidence            699999998 5899999999999999999999999999999999997543211  11110     123445555555667


Q ss_pred             CcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        87 ~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      ++++++|++++.++++||+++++ ++|+++.+|+|+||++++.+.|..+|.+|+. +.+|+++++|+|++||||
T Consensus        76 ~i~ii~G~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D  147 (261)
T cd07570          76 DIAVVVGLPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYGVFDEKRYFTPGDK-PDVLFFKGLRIGVEICED  147 (261)
T ss_pred             CcEEEEeceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCccccccccCccCCC-CCeEEECCEEEEEEeecc
Confidence            99999999988888999999999 6899999999999998877889999999997 689999999999999998

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=100.00  E-value=5.9e-32  Score=199.69  Aligned_cols=147  Identities=32%  Similarity=0.438  Sum_probs=124.1

Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcE
Q 031422           10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV   89 (160)
Q Consensus        10 ~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~   89 (160)
                      |||++|+++..+++.|++++.+++++|+++++|||||||++++||.+......  ..+. ...+...+.++++|++++++
T Consensus         1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~--~~~~-~~~~~~~~~l~~~a~~~~i~   77 (265)
T cd07572           1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLA--LAEE-EGDGPTLQALSELAKEHGIW   77 (265)
T ss_pred             CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhh--hhcc-ccCChHHHHHHHHHHHCCeE
Confidence            69999999888999999999999999999999999999999999875432111  0112 12357889999999999999


Q ss_pred             EEec-cccccC--CeeeEEEEEEcCCCCEeEEeeeccCCCC-----CCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           90 MPVS-FFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDG-----PGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        90 i~~g-~~~~~~--~~~~Ns~~~i~~~G~i~~~y~K~~l~~~-----~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +++| ++++.+  +++||++++++++|+++..|+|+||++.     ..+.|..+|.+|+. +.+|+++++|+|++||||
T Consensus        78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D  155 (265)
T cd07572          78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDE-VVVVDTPFGKIGLGICYD  155 (265)
T ss_pred             EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCc-ceEEecCCceEEEEEEec
Confidence            9987 556655  8999999999999999999999999532     23678889999997 799999999999999998

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=1e-31  Score=197.42  Aligned_cols=147  Identities=30%  Similarity=0.490  Sum_probs=126.7

Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEE
Q 031422           11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM   90 (160)
Q Consensus        11 va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i   90 (160)
                      ||++|+++.+|++.|++++.+++++|+++|+|+|||||++++||...+.  .+.+.+.+. .+..++.++++|+++++++
T Consensus         1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~--~~~~~~~~~-~~~~~~~l~~~a~~~~i~i   77 (255)
T cd07581           1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLD--DYARVAEPL-DGPFVSALARLARELGITV   77 (255)
T ss_pred             CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchh--hHHhhhccC-CCHHHHHHHHHHHHcCeEE
Confidence            6899999989999999999999999999999999999999999975432  123334433 3578899999999999999


Q ss_pred             EeccccccC-CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCC-ceeEEeCCeeEEEEeccC
Q 031422           91 PVSFFEEAN-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG-FKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        91 ~~g~~~~~~-~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~-~~v~~~~~~rig~~ICy~  160 (160)
                      ++|++++.+ +++||++++|+++|+++.+|+|.||++...+.|..+|.+|+.. ..+++++++|+|++||||
T Consensus        78 v~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D  149 (255)
T cd07581          78 VAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELPPVVFVVGGVKVGLATCYD  149 (255)
T ss_pred             EEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCCceEEecCCceEEEEEEec
Confidence            999998865 4899999999999999999999999876667788899999862 367888899999999998

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.98  E-value=2e-31  Score=197.32  Aligned_cols=145  Identities=35%  Similarity=0.594  Sum_probs=123.8

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (160)
Q Consensus        10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   88 (160)
                      |||++|+++ ..+++.|++++.+++++|+++++|||||||++++||...+.. +....+.....+...+.++++|+++++
T Consensus         1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~   79 (268)
T cd07580           1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRD-EAFALAEEVPDGASTRAWAELAAELGL   79 (268)
T ss_pred             CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHH-HHHHhhccCCCCchHHHHHHHHHHcCc
Confidence            699999999 489999999999999999999999999999999998755422 122222222235688999999999999


Q ss_pred             EEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      ++++|++++.++++||++++++++|. +..|+|.||++    .|..+|.+|+..+++|+++++|+|++||||
T Consensus        80 ~i~~G~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~----~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D  146 (268)
T cd07580          80 YIVAGFAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN----EEKLLFEPGDLGLPVFDTPFGRIGVAICYD  146 (268)
T ss_pred             EEEeecccccCCceEEEEEEECCCCc-EEEEEEecCCc----hhcceecCCCCCCceEEcCCCcEEEEEECc
Confidence            99999998888899999999998885 78999999986    477899999865689999999999999998

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.98  E-value=3.9e-31  Score=194.80  Aligned_cols=145  Identities=26%  Similarity=0.324  Sum_probs=122.2

Q ss_pred             cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcC
Q 031422            9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG   87 (160)
Q Consensus         9 ~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~   87 (160)
                      +|||++|+++ .+|++.|++++.+.+++|+++|+|||||||++++||...+.. +.....+.. .+...+.+++++++++
T Consensus         1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~-~~~~~~~~~-~~~~~~~l~~~a~~~~   78 (258)
T cd07578           1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRA-EIAPFVEPI-PGPTTARFAELAREHD   78 (258)
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHH-HhhhhcccC-CCHHHHHHHHHHHHcC
Confidence            5899999998 589999999999999999999999999999999999754431 122233322 3578899999999999


Q ss_pred             cEEEecccccc--CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           88 VVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        88 i~i~~g~~~~~--~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +.+++|++++.  ++++||++++|+++| ++.+|+|.||+.    .|..+|.+|+..+.+|+++++|+|++||||
T Consensus        79 i~ii~G~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~----~e~~~~~~g~~~~~v~~~~~~rig~~IC~D  148 (258)
T cd07578          79 CYIVVGLPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI----SEPKWAADGDLGHQVFDTEIGRIALLICMD  148 (258)
T ss_pred             cEEEEecceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc----ccccccCCCCCCceEEECCCccEEEEEeeC
Confidence            99999998764  478999999999888 789999999864    467789999854689999999999999998

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.98  E-value=6.1e-31  Score=193.18  Aligned_cols=141  Identities=22%  Similarity=0.271  Sum_probs=122.1

Q ss_pred             cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcC
Q 031422            9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG   87 (160)
Q Consensus         9 ~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~   87 (160)
                      ||||++|+++ ..|++.|++++.+.+++|++ |+|||||||++++||.+..     .+.++.. .+..+++++++|++++
T Consensus         1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~-----~~~~~~~-~~~~~~~l~~la~~~~   73 (252)
T cd07575           1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNA-----EALAEPM-NGPTLQWMKAQAKKKG   73 (252)
T ss_pred             CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccH-----HHhhccc-CChHHHHHHHHHHHCC
Confidence            6899999999 58999999999999999997 9999999999999997532     1233332 3578999999999999


Q ss_pred             cEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           88 VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        88 i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +.+++|++++.++++||++++++++|.+ ..|+|+||++.+  .|..+|.+|+. ..+|+++++|+|++||||
T Consensus        74 i~i~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D  142 (252)
T cd07575          74 AAITGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNE-RVIVEYKGWKILLQVCYD  142 (252)
T ss_pred             eEEEEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCC-ceEEEECCEEEEEEEEec
Confidence            9999888888888999999999999986 499999997542  57788999986 799999999999999998

Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.98  E-value=3.8e-31  Score=195.06  Aligned_cols=141  Identities=26%  Similarity=0.410  Sum_probs=122.9

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (160)
Q Consensus        10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   88 (160)
                      |||++|+++ .+|++.|++++.+++++|+++|+|||||||++++||.+.+..   ...+. ...+..++.++++|+++++
T Consensus         1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~---~~~~~-~~~~~~~~~l~~~a~~~~~   76 (261)
T cd07585           1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRAL---SREAE-VPDGPSTQALSDLARRYGL   76 (261)
T ss_pred             CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCccc---chhcc-cCCChHHHHHHHHHHHcCc
Confidence            699999998 589999999999999999999999999999999999764321   11111 1236788999999999999


Q ss_pred             EEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      ++++|++++.++++||++++++++|. +..|+|.||++    .|..+|.+|+. +++|+++++|+|++||||
T Consensus        77 ~i~~G~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~----~E~~~~~~G~~-~~v~~~~~~rig~~IC~D  142 (261)
T cd07585          77 TILAGLIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR----REHPYIAAGDE-YPVFATPGVRFGILICYD  142 (261)
T ss_pred             EEEEeccccCCCceeEEEEEECCCCc-EeEEeeecCCc----cccceEcCCCC-CceEEcCCceEEEEEEcC
Confidence            99999998888899999999999887 58999999987    47789999987 799999999999999998

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.98  E-value=4.3e-31  Score=194.65  Aligned_cols=142  Identities=35%  Similarity=0.582  Sum_probs=122.1

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (160)
Q Consensus        10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   88 (160)
                      |||++|+++ ..|++.|++++.+++++|+   +|||||||++++||..... ..+.+.+++..++..++.|+++|+++++
T Consensus         1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~-~~~~~~~~~~~~~~~~~~l~~~a~~~~i   76 (259)
T cd07577           1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSK-EEVASLAESIPDGPTTRFLQELARETGA   76 (259)
T ss_pred             CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCH-HHHHHhhcccCCChHHHHHHHHHHHhCc
Confidence            699999998 5899999999999999884   9999999999999975432 2334444433246889999999999999


Q ss_pred             EEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      ++++|++++.++++||++++++++| ++.+|+|+||++    .|..+|++|+..+.+|+++++|+|++||||
T Consensus        77 ~ii~G~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~----~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D  143 (259)
T cd07577          77 YIVAGLPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY----EEKLFFEPGDTGFRVFDIGDIRIGVMICFD  143 (259)
T ss_pred             EEEecceeccCCceEEEEEEECCCc-cEeeEeeccCCh----hhhccccCCCCCCceEEeCCcEEEEEEEcC
Confidence            9999999888889999999999888 899999999976    477889999833799999999999999998

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)

Probab=99.97  E-value=2.9e-31  Score=198.37  Aligned_cols=147  Identities=19%  Similarity=0.253  Sum_probs=118.8

Q ss_pred             cEEEEEeCCC-CCCH-------HHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHh-h-----------hc-
Q 031422            9 VVVSALQFAC-TDDV-------STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFF-Q-----------RA-   67 (160)
Q Consensus         9 ~~va~~Q~~~-~~~~-------~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~-~-----------~~-   67 (160)
                      .++|+||..+ +.+.       +.|++++.+++++|+++++|||||||++++||...++..... +           .+ 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (299)
T cd07567           1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD   80 (299)
T ss_pred             CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence            3789999987 4444       899999999999999999999999999999997654321110 0           00 


Q ss_pred             -ccCCCChHHHHHHHHHHHcCcEEEecccccc-----------C-CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccce
Q 031422           68 -KPYKDHPTILKMQELAKELGVVMPVSFFEEA-----------N-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKF  134 (160)
Q Consensus        68 -~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-----------~-~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~  134 (160)
                       .....+..++.|+++|++++++|++|+.++.           + +++||++++|+++|+++.+|+|+||+     .|..
T Consensus        81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~  155 (299)
T cd07567          81 PDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPG  155 (299)
T ss_pred             ccccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----cccc
Confidence             0112357889999999999999999988763           2 36999999999999999999999997     3777


Q ss_pred             eecCCCCCceeEEeCCe-eEEEEeccC
Q 031422          135 YFNPGDTGFKVFQTKFA-KIGVGKGFY  160 (160)
Q Consensus       135 ~~~~g~~~~~v~~~~~~-rig~~ICy~  160 (160)
                      +|.+|+..+.+|+++++ |+|++||||
T Consensus       156 ~~~~G~~~~~vf~t~~g~kiGvlICyD  182 (299)
T cd07567         156 FDVPPEPEIVTFDTDFGVTFGIFTCFD  182 (299)
T ss_pred             ccCCCCCCceEEECCCCCEEEEEEEee
Confidence            88899644789999975 999999998

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking

>COG0388 Predicted amidohydrolase [General function prediction only]

Probab=99.97  E-value=7e-31  Score=195.00  Aligned_cols=149  Identities=37%  Similarity=0.537  Sum_probs=124.9

Q ss_pred             ccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHc
Q 031422            8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL   86 (160)
Q Consensus         8 ~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~   86 (160)
                      .+|||++|+++ ..|.+.|++++.+++++|+++++|||||||++++||.+.+  ..+.+.+.....+...+.++++++++
T Consensus         2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~--~~~~~~~~~~~~~~~~~~l~~~a~~~   79 (274)
T COG0388           2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED--DLFLEEAAAEAGEETLEFLAALAEEG   79 (274)
T ss_pred             ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc--HHHHHhhhhccCChHHHHHHHHHHhC
Confidence            58999999998 7899999999999999999999999999999999998775  22333333334568999999999966


Q ss_pred             CcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        87 ~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      .+.+++|...... ..||++++++++|+++.+|+|.||++. .+.|+.+|.+|+....+|+++++|+|++||||
T Consensus        80 ~~~ivg~~~~~~~-~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D  151 (274)
T COG0388          80 GVIIVGGPLPERE-KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGVVVFETDGGKIGLLICYD  151 (274)
T ss_pred             CeEEEEeeeeccc-cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccceeEEeCCceEEEEEEee
Confidence            6666665443333 788888888899999999999999986 66799999999973359999999999999998

>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.97  E-value=7.4e-31  Score=194.32  Aligned_cols=143  Identities=27%  Similarity=0.413  Sum_probs=120.3

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (160)
Q Consensus        10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   88 (160)
                      |||++|+++ ..+++.|++++.+.+++|+++|+|+|||||++++||.+.+.   ..+.+... ..+.++.|++.++  ++
T Consensus         1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~---~~~~~~~~-~~~~~~~l~~~a~--~~   74 (269)
T cd07586           1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDL---VYEVAMHA-DDPRLQALAEASG--GI   74 (269)
T ss_pred             CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhh---hhhhhccc-chHHHHHHHHHcC--CC
Confidence            699999998 58999999999999999999999999999999999986532   12222221 2355666666652  89


Q ss_pred             EEEecccccc-CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        89 ~i~~g~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      .+++|++++. ++++||+++++ ++|+++.+|+|+|||+++.+.|..+|++|+. +.+|+++++|+|++||||
T Consensus        75 ~ii~G~~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~-~~vf~~~~~~ig~~IC~D  145 (269)
T cd07586          75 CVVFGFVEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLPTYGLFEEGRYFAPGSH-LRAFDTRFGRAGVLICED  145 (269)
T ss_pred             EEEEeCeEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCCCCCccceeeeecCCCc-ceEEEeCCeEEEEEEEec
Confidence            9999998876 48999999999 8999999999999987766778889999997 799999999999999998

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

Probab=99.97  E-value=1.9e-30  Score=190.14  Aligned_cols=144  Identities=40%  Similarity=0.638  Sum_probs=124.8

Q ss_pred             EEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcE
Q 031422           11 VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV   89 (160)
Q Consensus        11 va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~   89 (160)
                      ||++|+++. .+.++|++++.+.+++|+++++|+|||||++++||...+..... ..... ......++++++++++++.
T Consensus         1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~-~~~~~-~~~~~~~~l~~~a~~~~i~   78 (253)
T cd07197           1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDL-DLAEE-LDGPTLEALAELAKELGIY   78 (253)
T ss_pred             CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhh-hhccc-CCchHHHHHHHHHHHhCeE
Confidence            689999995 89999999999999999999999999999999998765432111 11121 1357899999999999999


Q ss_pred             EEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        90 i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +++|++++.++++||++++++++|+++.+|+|.||++   +.|..+|.+|+. ..+|+++++|+|++||||
T Consensus        79 ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~-~~~f~~~~~~ig~~IC~d  145 (253)
T cd07197          79 IVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDE-FPVFDTPGGKIGLLICYD  145 (253)
T ss_pred             EEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCC-CceEEcCCceEEEEEEec
Confidence            9999998888899999999999999999999999987   367788999987 799999999999999998

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and

>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

Probab=99.97  E-value=1.5e-30  Score=194.54  Aligned_cols=150  Identities=23%  Similarity=0.265  Sum_probs=115.5

Q ss_pred             EEEEEeCCCC-CCHHHHHHHHHHHHHHHHh----CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHH
Q 031422           10 VVSALQFACT-DDVSTNLATAERLVRAAHG----KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK   84 (160)
Q Consensus        10 ~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~----~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~   84 (160)
                      |||++|+++. .|++.|++++.+++++|++    +++|||||||++++||...+. .+....++....+...+.++++|+
T Consensus         1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~-~~~~~~ae~~~~g~~~~~l~~lAk   79 (295)
T cd07566           1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSL-EHIKPYLEPTTSGPSFEWAREVAK   79 (295)
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccH-HHHHHHHHhcCCCHHHHHHHHHHH
Confidence            6999999984 8999999999999999988    899999999999999975432 112223332224678899999999


Q ss_pred             HcCcEEEeccccccC---CeeeEEEEEEcCCCCEeEEeeeccCCCCCC---cccc-eeec------CCCCCce-eEEeCC
Q 031422           85 ELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG---YQEK-FYFN------PGDTGFK-VFQTKF  150 (160)
Q Consensus        85 ~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~---~~e~-~~~~------~g~~~~~-v~~~~~  150 (160)
                      +++++|++|++++.+   +++|||+++|+++|+++++|+|+||++...   +.|. .++.      +|+.... ++...+
T Consensus        80 ~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~~~~~~~~  159 (295)
T cd07566          80 KFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPFAKDDDFDGGSVDVT  159 (295)
T ss_pred             hcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCccccccccccccccccccccCCc
Confidence            999999999887753   489999999999999999999999986421   1122 1222      7765222 233358


Q ss_pred             eeEEEEeccC
Q 031422          151 AKIGVGKGFY  160 (160)
Q Consensus       151 ~rig~~ICy~  160 (160)
                      +|+|++||||
T Consensus       160 ~kiG~~ICyD  169 (295)
T cd07566         160 LKTSIGICMD  169 (295)
T ss_pred             ceeEEEEEec
Confidence            9999999998

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.

>PRK02628 nadE NAD synthetase; Reviewed

Probab=99.97  E-value=1.8e-30  Score=212.40  Aligned_cols=150  Identities=23%  Similarity=0.223  Sum_probs=126.9

Q ss_pred             cccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHH
Q 031422            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE   85 (160)
Q Consensus         7 ~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   85 (160)
                      +.||||++|+++ .+|++.|++++.+.+++|+++++|||||||++++||.+.+...... ..+.  ....++.|++++++
T Consensus        11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~-~~~~--~~~~l~~L~~~a~~   87 (679)
T PRK02628         11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDT-LLDA--VEDALATLVEASAD   87 (679)
T ss_pred             CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHH-HHHh--hHHHHHHHHHHHhh
Confidence            568999999999 5899999999999999999999999999999999998776421111 1111  13677889999999


Q ss_pred             cCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCc----------------eeEEe-
Q 031422           86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF----------------KVFQT-  148 (160)
Q Consensus        86 ~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~----------------~v~~~-  148 (160)
                      +++.+++|++++.++++||++++++ +|++++.|+|+|||++..|.|.++|.+|+...                .+|++ 
T Consensus        88 ~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~~vf~~~  166 (679)
T PRK02628         88 LDPLLVVGAPLRVRHRLYNCAVVIH-RGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLCGQEVPFGTDLLFEAE  166 (679)
T ss_pred             cCEEEEEeeEEEECCEEEEEEEEEc-CCEEEEEeccccCCCCCcccccccccCCCCCCCceEeecCeeeccCCceeEEec
Confidence            9999999998877889999999996 79999999999999988899999999998511                24655 


Q ss_pred             --CCeeEEEEeccC
Q 031422          149 --KFAKIGVGKGFY  160 (160)
Q Consensus       149 --~~~rig~~ICy~  160 (160)
                        +++|+|+.||||
T Consensus       167 ~~~g~kiGv~IC~D  180 (679)
T PRK02628        167 DLPGFVFGVEICED  180 (679)
T ss_pred             ccCCcEEEEEEecc
Confidence              689999999998

>PRK13981 NAD synthetase; Provisional

Probab=99.97  E-value=2.3e-30  Score=207.85  Aligned_cols=144  Identities=26%  Similarity=0.265  Sum_probs=123.4

Q ss_pred             cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHH--
Q 031422            9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE--   85 (160)
Q Consensus         9 ~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~--   85 (160)
                      ||||++|+++ .+|++.|++++.+.+++|+++|+|||||||++++||.+.++..... .     .....+.+.+++++  
T Consensus         1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~-~-----~~~~~~~l~~La~~~~   74 (540)
T PRK13981          1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPA-F-----LAACEAALERLAAATA   74 (540)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHH-H-----HHHHHHHHHHHHHhcC
Confidence            6899999998 6899999999999999999999999999999999998654311100 0     01234556677766  


Q ss_pred             cCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        86 ~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +++.+++|++++.++++||++++++ +|+++..|+|+||++++.|.|..+|++|+. ..+|+++++|+|++||||
T Consensus        75 ~~i~ii~G~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~-~~~~~~~g~rigv~IC~D  147 (540)
T PRK13981         75 GGPAVLVGHPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYGVFDEKRYFAPGPE-PGVVELKGVRIGVPICED  147 (540)
T ss_pred             CCCEEEEeCcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCCCcCccccccCCCC-ceEEEECCEEEEEEEehh
Confidence            7999999999888889999999997 799999999999999888899999999987 689999999999999998

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=99.97  E-value=7.9e-30  Score=190.68  Aligned_cols=144  Identities=24%  Similarity=0.209  Sum_probs=118.8

Q ss_pred             cEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh--CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHH
Q 031422            9 VVVSALQFAC-----TDDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE   81 (160)
Q Consensus         9 ~~va~~Q~~~-----~~~~~~n~~~~~~~i~~a~~--~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (160)
                      ++||++|+++     ..+++.|++++.+++++|++  +|+|||||||++++||.....  +..+.++.. .++.++.|++
T Consensus         1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~--~~~~~a~~~-~~~~~~~l~~   77 (291)
T cd07565           1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKW--TMDETACTV-PGPETDIFAE   77 (291)
T ss_pred             CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcc--hhhhhccCC-CChhHHHHHH
Confidence            4799999997     47899999999999999986  599999999999999874321  234444443 3678999999


Q ss_pred             HHHHcCcEEEeccccccC---CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeC-CeeEEEEe
Q 031422           82 LAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGVGK  157 (160)
Q Consensus        82 ~a~~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~-~~rig~~I  157 (160)
                      +|+++++++++|+.++.+   +++||++++|+++|+++.+|+|+||+..     ...|.+|+..++++++. |+|+|++|
T Consensus        78 lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~~-----~e~~~~G~~~~~v~~~~~g~riG~~I  152 (291)
T cd07565          78 ACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWVP-----IEPWYPGDLGTPVCEGPKGSKIALII  152 (291)
T ss_pred             HHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCCC-----cccccCCCCCceeeECCCCCEEEEEE
Confidence            999999999999887653   6899999999999999999999998542     23478998546889985 67999999


Q ss_pred             ccC
Q 031422          158 GFY  160 (160)
Q Consensus       158 Cy~  160 (160)
                      |||
T Consensus       153 CyD  155 (291)
T cd07565         153 CHD  155 (291)
T ss_pred             EcC
Confidence            998

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>PLN02339 NAD+ synthase (glutamine-hydrolysing)

Probab=99.97  E-value=1.6e-30  Score=212.63  Aligned_cols=150  Identities=14%  Similarity=0.056  Sum_probs=120.3

Q ss_pred             cccEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHH
Q 031422            7 REVVVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE   85 (160)
Q Consensus         7 ~~~~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   85 (160)
                      +.||||++|++++ +|++.|++++.+.+++|+++|+|||||||++++||.+.+...   +.+........+..|.+.+++
T Consensus         2 ~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~---~~~~~~~~~~~L~~La~~a~~   78 (700)
T PLN02339          2 RLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFL---ELDTVTHSWECLAEILVGDLT   78 (700)
T ss_pred             ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhh---ChhHHHHHHHHHHHHHhhccc
Confidence            4689999999995 799999999999999999999999999999999998765321   111100001344444444457


Q ss_pred             cCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCC-----------------------
Q 031422           86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG-----------------------  142 (160)
Q Consensus        86 ~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~-----------------------  142 (160)
                      +++.+++|+++..++++||+++++ .+|++++.|+|.|||+++.|.|.++|.||+..                       
T Consensus        79 ~~i~vvvG~p~~~~~~lYN~a~vi-~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpf  157 (700)
T PLN02339         79 DGILCDIGMPVIHGGVRYNCRVFC-LNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPF  157 (700)
T ss_pred             CCeEEEEeeeEEECCeEEEEEEEE-eCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceecc
Confidence            799999999987778899999999 57999999999999998889999999998521                       


Q ss_pred             -ceeEEeCCeeEEEEeccC
Q 031422          143 -FKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus       143 -~~v~~~~~~rig~~ICy~  160 (160)
                       ..+|++++.|+|+.||||
T Consensus       158 g~~~~~~~g~~iGv~ICeD  176 (700)
T PLN02339        158 GDGYLQFLDTAVAAETCEE  176 (700)
T ss_pred             CcceeecCCeEEEEEEecc
Confidence             124566788999999998

>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases)

Probab=99.97  E-value=2.7e-30  Score=191.52  Aligned_cols=137  Identities=18%  Similarity=0.214  Sum_probs=120.6

Q ss_pred             cEEEEEeCCCC-C------CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHH
Q 031422            9 VVVSALQFACT-D------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE   81 (160)
Q Consensus         9 ~~va~~Q~~~~-~------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (160)
                      +|||++|+++. .      +.++|++++.+++++|+++++|+|||||++++||..              ..+..++.+++
T Consensus         1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~--------------~~~~~~~~l~~   66 (270)
T cd07571           1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQ--------------RDPDALARLAR   66 (270)
T ss_pred             CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcccc--------------cCHHHHHHHHH
Confidence            48999999983 3      789999999999999999999999999999998751              13578899999


Q ss_pred             HHHHcCcEEEeccccccC--CeeeEEEEEEcCCCCEeEEeeeccCCCCCCc---------------ccceeecCCCCCce
Q 031422           82 LAKELGVVMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGY---------------QEKFYFNPGDTGFK  144 (160)
Q Consensus        82 ~a~~~~i~i~~g~~~~~~--~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~---------------~e~~~~~~g~~~~~  144 (160)
                      +|+++++++++|++++.+  +++||++++++++|+++.+|+|+||++..++               .|..+|.+|+. +.
T Consensus        67 ~ak~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~-~~  145 (270)
T cd07571          67 AARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTG-PQ  145 (270)
T ss_pred             HHHhcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCC-CC
Confidence            999999999999987755  4899999999999999999999999876543               35678999987 79


Q ss_pred             eEEeCC-eeEEEEeccC
Q 031422          145 VFQTKF-AKIGVGKGFY  160 (160)
Q Consensus       145 v~~~~~-~rig~~ICy~  160 (160)
                      +|++++ +|+|++||||
T Consensus       146 vf~~~~~~r~g~~IC~D  162 (270)
T cd07571         146 PLLLGGGVRVGPLICYE  162 (270)
T ss_pred             ccccCCCceEEEEEEee
Confidence            999999 9999999998

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.

>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

Probab=99.97  E-value=9.8e-30  Score=189.33  Aligned_cols=147  Identities=24%  Similarity=0.321  Sum_probs=118.3

Q ss_pred             cEEEEEeCCCC--CCHHHHHHHHHHHHHHHHhCCCcEEEecccccccccc---ccch--hhHhhhcccCCCChHHHHHHH
Q 031422            9 VVVSALQFACT--DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFC---QAQR--EDFFQRAKPYKDHPTILKMQE   81 (160)
Q Consensus         9 ~~va~~Q~~~~--~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~---~~~~--~~~~~~~~~~~~~~~~~~l~~   81 (160)
                      ||||++|+++.  .+.+.|++++++++++|+++|+|||||||++++||..   .+..  .+....... ..+...+.+++
T Consensus         1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~   79 (280)
T cd07574           1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAA-LTPDYVALFSE   79 (280)
T ss_pred             CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHH-HHHHHHHHHHH
Confidence            68999999983  7999999999999999999999999999999988521   1110  111111111 12578899999


Q ss_pred             HHHHcCcEEEecc-ccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           82 LAKELGVVMPVSF-FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        82 ~a~~~~i~i~~g~-~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +|++++++|++|. +++.++++||++++++++|.+ .+|+|.||++..  .+..++.+|+. +.+|+++++|+|++||||
T Consensus        80 ~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~-~~v~~~~~~~ig~~IC~D  155 (280)
T cd07574          80 LARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDK-LKVFDTDLGKIGILICYD  155 (280)
T ss_pred             HHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCC-ceEEecCCccEEEEEecc
Confidence            9999999999985 456778999999999999987 999999998742  23345789987 789999999999999998

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.97  E-value=3.3e-29  Score=187.72  Aligned_cols=150  Identities=25%  Similarity=0.296  Sum_probs=119.8

Q ss_pred             EEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh-----CCCcEEEeccccccccccccchhh--HhhhcccCCCChHHH
Q 031422           10 VVSALQFAC-----TDDVSTNLATAERLVRAAHG-----KGANIILIQELFEGYYFCQAQRED--FFQRAKPYKDHPTIL   77 (160)
Q Consensus        10 ~va~~Q~~~-----~~~~~~n~~~~~~~i~~a~~-----~~~dlvv~PE~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~   77 (160)
                      +++.+|...     .+|++.|++++.+++++|++     +++|||||||++++||...+....  +.+.+++. +++.++
T Consensus         2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~-~~~~~~   80 (294)
T cd07582           2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDI-PGPETE   80 (294)
T ss_pred             eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccC-CCHHHH
Confidence            578889876     37899999999999999986     479999999999999986543222  34555554 478999


Q ss_pred             HHHHHHHHcCcEEEeccccccC---CeeeEEEEEEcCCCCEeEEeeeccCCCCCC-------ccc-ceeecCC-CCCcee
Q 031422           78 KMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG-------YQE-KFYFNPG-DTGFKV  145 (160)
Q Consensus        78 ~l~~~a~~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~-------~~e-~~~~~~g-~~~~~v  145 (160)
                      .|+++|++++++|++|..++.+   +++||++++++++|+++..|+|+||+....       +.+ ...+.+| +..+++
T Consensus        81 ~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~~v  160 (294)
T cd07582          81 ALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDALFPV  160 (294)
T ss_pred             HHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCccccccee
Confidence            9999999999999999887643   689999999999999999999999975321       112 1234455 333689


Q ss_pred             EEeCCeeEEEEeccC
Q 031422          146 FQTKFAKIGVGKGFY  160 (160)
Q Consensus       146 ~~~~~~rig~~ICy~  160 (160)
                      ++++++|+|++||||
T Consensus       161 ~~~~~~~iG~~ICyD  175 (294)
T cd07582         161 ADTEIGNLGCLACEE  175 (294)
T ss_pred             ecCCCceEEEEEeec
Confidence            999999999999998

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13287 amiF formamidase; Provisional

Probab=99.96  E-value=2.3e-28  Score=185.55  Aligned_cols=147  Identities=22%  Similarity=0.214  Sum_probs=119.3

Q ss_pred             CcccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHhC--CCcEEEeccccccccccccchhhHhhhcccCCCChHHHH
Q 031422            6 RREVVVSALQFAC-----TDDVSTNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK   78 (160)
Q Consensus         6 ~~~~~va~~Q~~~-----~~~~~~n~~~~~~~i~~a~~~--~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   78 (160)
                      ..+++||++|+++     ..+++.|++++.+.+++|++.  ++|||||||++++||....|.  ..+.+... +++.++.
T Consensus        11 ~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~--~~~~a~~~-~g~~~~~   87 (333)
T PRK13287         11 IEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWT--TEEFLCTV-DGPEVDA   87 (333)
T ss_pred             CCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccc--hhhhcccC-CCHHHHH
Confidence            4679999999996     368999999999999999864  899999999999999765431  12333333 3578999


Q ss_pred             HHHHHHHcCcEEEeccccccC-C-eeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeC-CeeEEE
Q 031422           79 MQELAKELGVVMPVSFFEEAN-N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGV  155 (160)
Q Consensus        79 l~~~a~~~~i~i~~g~~~~~~-~-~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~-~~rig~  155 (160)
                      ++++|+++++++++|..++.+ + ++|||+++++++|+++.+|+|+||+.     +...|.+|+..+++|+++ |.|+|+
T Consensus        88 l~~~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~~v~~~~~g~kiG~  162 (333)
T PRK13287         88 FAQACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGIPVCDGPGGSKLAV  162 (333)
T ss_pred             HHHHHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCCceEECCCCceEEE
Confidence            999999999999998876543 3 49999999999999999999999743     223578998436899986 569999


Q ss_pred             EeccC
Q 031422          156 GKGFY  160 (160)
Q Consensus       156 ~ICy~  160 (160)
                      +||||
T Consensus       163 ~ICyD  167 (333)
T PRK13287        163 CICHD  167 (333)
T ss_pred             EEEec
Confidence            99998

>PRK13286 amiE acylamide amidohydrolase; Provisional

Probab=99.96  E-value=1.6e-27  Score=181.29  Aligned_cols=145  Identities=17%  Similarity=0.157  Sum_probs=116.8

Q ss_pred             cccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHH--hCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHH
Q 031422            7 REVVVSALQFAC-----TDDVSTNLATAERLVRAAH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM   79 (160)
Q Consensus         7 ~~~~va~~Q~~~-----~~~~~~n~~~~~~~i~~a~--~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l   79 (160)
                      ..++||++|++.     ..++..|++++.+.+++|+  ..++|||||||++++||....  .++.+.+... .+...+.|
T Consensus        11 ~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~--~~~~~~a~~i-~g~~~~~l   87 (345)
T PRK13286         11 DTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDR--QEMYETASTI-PGEETAIF   87 (345)
T ss_pred             CceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcCh--HHHHHhcccC-CCHHHHHH
Confidence            569999999984     3578999999999999886  458999999999999965332  2344555554 36788999


Q ss_pred             HHHHHHcCcEEEeccc-cc----cCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeC-CeeE
Q 031422           80 QELAKELGVVMPVSFF-EE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKI  153 (160)
Q Consensus        80 ~~~a~~~~i~i~~g~~-~~----~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~-~~ri  153 (160)
                      +++|++++++++.|.. ++    .++++||++++|+++|+++.+|+|+|++.     +...|.||+. ..+++++ |.|+
T Consensus        88 ~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~-----~~e~~~pG~~-~~v~~~~~G~ki  161 (345)
T PRK13286         88 AEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC-----PIEGWYPGDC-TYVSEGPKGLKI  161 (345)
T ss_pred             HHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc-----hhhceecCCC-CEEEeCCCCcEE
Confidence            9999999999887765 33    13569999999999999999999999754     3346789987 6899986 5699


Q ss_pred             EEEeccC
Q 031422          154 GVGKGFY  160 (160)
Q Consensus       154 g~~ICy~  160 (160)
                      |++||||
T Consensus       162 G~lIC~D  168 (345)
T PRK13286        162 SLIICDD  168 (345)
T ss_pred             EEEEEec
Confidence            9999998

>TIGR00546 lnt apolipoprotein N-acyltransferase

Probab=99.95  E-value=6.6e-27  Score=181.49  Aligned_cols=139  Identities=15%  Similarity=0.133  Sum_probs=115.0

Q ss_pred             cccEEEEEeCCCCC-------CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHH
Q 031422            7 REVVVSALQFACTD-------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM   79 (160)
Q Consensus         7 ~~~~va~~Q~~~~~-------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l   79 (160)
                      .++||+++|.++..       +.++|++++.+.+++|++ ++|+|||||++++++....             .....+.+
T Consensus       158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~l  223 (391)
T TIGR00546       158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADRL  223 (391)
T ss_pred             CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHHH
Confidence            56999999999843       367899999999998876 8999999999998764210             12367889


Q ss_pred             HHHHHHcCcEEEeccccccCC---eeeEEEEEEcCCCCEeEEeeeccCCCCCCccc----------------ceeecCCC
Q 031422           80 QELAKELGVVMPVSFFEEANN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE----------------KFYFNPGD  140 (160)
Q Consensus        80 ~~~a~~~~i~i~~g~~~~~~~---~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e----------------~~~~~~g~  140 (160)
                      +++++++++.+++|..+.+++   ++|||+++++++|+++.+|+|+||.|.+++.+                ..+|.+|+
T Consensus       224 ~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~  303 (391)
T TIGR00546       224 KLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGP  303 (391)
T ss_pred             HHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCC
Confidence            999999999999998866433   79999999999999999999999988765422                24688998


Q ss_pred             CCceeEEeCCeeEEEEeccC
Q 031422          141 TGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus       141 ~~~~v~~~~~~rig~~ICy~  160 (160)
                      . +++++++++|+|++||||
T Consensus       304 ~-~~~~~~~~~~~g~~ICyE  322 (391)
T TIGR00546       304 G-PQVLKLPGGKIAPLICYE  322 (391)
T ss_pred             C-CCCCcCCCceeeeeEEee
Confidence            7 789999999999999998

This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.

>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.94  E-value=8.6e-27  Score=164.03  Aligned_cols=148  Identities=26%  Similarity=0.402  Sum_probs=125.4

Q ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422            9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (160)
Q Consensus         9 ~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   88 (160)
                      .+||++|+....|..+|++.+.+++++|+.+||++|.|||.+-  |.... ..+-.++++++ ++.+++..+++|++++|
T Consensus        16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~d--Fi~~n-~~esi~Lae~l-~~k~m~~y~elar~~nI   91 (295)
T KOG0807|consen   16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFD--FIGQN-PLESIELAEPL-DGKFMEQYRELARSHNI   91 (295)
T ss_pred             ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhh--hhcCC-cccceeccccc-ChHHHHHHHHHHHhcCe
Confidence            6899999999999999999999999999999999999999843  21111 22345567764 68999999999999999


Q ss_pred             EEEec-cccccC---CeeeEEEEEEcCCCCEeEEeeeccCC-----CCCCcccceeecCCCCCceeEEeCCeeEEEEecc
Q 031422           89 VMPVS-FFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIP-----DGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGF  159 (160)
Q Consensus        89 ~i~~g-~~~~~~---~~~~Ns~~~i~~~G~i~~~y~K~~l~-----~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy  159 (160)
                      |+.+| ..++.+   .+++|+.++++.+|+++..|+|.||+     +.+.+.|+....||..-.+.++++-||+|..|||
T Consensus        92 wlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGlaICY  171 (295)
T KOG0807|consen   92 WLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGLAICY  171 (295)
T ss_pred             eEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccceeeee
Confidence            99986 445543   69999999999999999999999995     3456789999999998667799999999999999


Q ss_pred             C
Q 031422          160 Y  160 (160)
Q Consensus       160 ~  160 (160)
                      |
T Consensus       172 D  172 (295)
T KOG0807|consen  172 D  172 (295)
T ss_pred             e
Confidence            8

>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.93  E-value=8.1e-26  Score=165.18  Aligned_cols=154  Identities=26%  Similarity=0.316  Sum_probs=129.4

Q ss_pred             CcccEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccc-cchhhHhhhcccCCCChHHHHHHHHH
Q 031422            6 RREVVVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ-AQREDFFQRAKPYKDHPTILKMQELA   83 (160)
Q Consensus         6 ~~~~~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~a   83 (160)
                      ..++++|++|.... .+...|++.....+++|+++++++|||||.+++||... .+..-..+...+-..++.++.+++++
T Consensus        11 ~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~va   90 (298)
T KOG0806|consen   11 LPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQGLSEVA   90 (298)
T ss_pred             ccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHHhHHHH
Confidence            35679999999994 68999999999999999999999999999999999873 32221122222111368999999999


Q ss_pred             HHcCcEEEecccccc--CCeeeEEEEEEcCCCCEeEEeeeccCCCCC--C---cccceeecCCCCCceeEEeCCeeEEEE
Q 031422           84 KELGVVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDGP--G---YQEKFYFNPGDTGFKVFQTKFAKIGVG  156 (160)
Q Consensus        84 ~~~~i~i~~g~~~~~--~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~--~---~~e~~~~~~g~~~~~v~~~~~~rig~~  156 (160)
                      +++++++++|.++..  .++.||+..+++++|..+..|||.||++..  .   |.|...|.+|.. +.+++...+|+|+.
T Consensus        91 ~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~-f~~~~~~~gkfGi~  169 (298)
T KOG0806|consen   91 ERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQ-FTVVDTSYGKFGIF  169 (298)
T ss_pred             hhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcC-CCcccCCCCceEEE
Confidence            999999999988764  489999999999999999999999998642  2   678889999998 79999999999999


Q ss_pred             eccC
Q 031422          157 KGFY  160 (160)
Q Consensus       157 ICy~  160 (160)
                      ||||
T Consensus       170 IC~D  173 (298)
T KOG0806|consen  170 ICFD  173 (298)
T ss_pred             EEec
Confidence            9998

>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed

Probab=99.92  E-value=8.8e-25  Score=174.50  Aligned_cols=139  Identities=19%  Similarity=0.147  Sum_probs=110.6

Q ss_pred             cccEEEEEeCCCCC-------CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHH
Q 031422            7 REVVVSALQFACTD-------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM   79 (160)
Q Consensus         7 ~~~~va~~Q~~~~~-------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l   79 (160)
                      .++||+++|.++..       +.++|++++.+.++++ ++++|+|||||++++++. .+            ..+...+.+
T Consensus       218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~-~~------------~~~~~~~~l  283 (505)
T PRK00302        218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL-ED------------LPQAFLKAL  283 (505)
T ss_pred             CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc-cc------------ccHHHHHHH
Confidence            46999999999843       4567888888888844 578999999999886542 10            123567789


Q ss_pred             HHHHHHcCcEEEeccccccC---C-eeeEEEEEEcCCCCEeEEeeeccCCCCCCccc---------------ceeecCCC
Q 031422           80 QELAKELGVVMPVSFFEEAN---N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNPGD  140 (160)
Q Consensus        80 ~~~a~~~~i~i~~g~~~~~~---~-~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e---------------~~~~~~g~  140 (160)
                      +++++++++.+++|..+..+   + ++||+++++++ |+++.+|+|+||+|.+++.+               ..+|.+|+
T Consensus       284 ~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~  362 (505)
T PRK00302        284 DDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGP  362 (505)
T ss_pred             HHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCC
Confidence            99999999999999886542   3 69999999988 88899999999988765421               12688998


Q ss_pred             CCceeEEeCCeeEEEEeccC
Q 031422          141 TGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus       141 ~~~~v~~~~~~rig~~ICy~  160 (160)
                      ...++++++++|+|++||||
T Consensus       363 ~~~~v~~~~~~~ig~~ICyE  382 (505)
T PRK00302        363 YVQPPLLAKGLKLAPLICYE  382 (505)
T ss_pred             CCCCCcccCCceEEEEEeeh
Confidence            43689999999999999998

>PRK12291 apolipoprotein N-acyltransferase; Reviewed

Probab=99.92  E-value=5.4e-24  Score=165.82  Aligned_cols=133  Identities=14%  Similarity=0.117  Sum_probs=106.1

Q ss_pred             cEEEEEeCCCCCC-------HHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHH
Q 031422            9 VVVSALQFACTDD-------VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE   81 (160)
Q Consensus         9 ~~va~~Q~~~~~~-------~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (160)
                      .+|+++|+|+.++       .+.+.++..+.+++|.+.++|+|||||++++.+...              .+...+.+++
T Consensus       195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~--------------~~~~~~~l~~  260 (418)
T PRK12291        195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNN--------------SPILLDKLKE  260 (418)
T ss_pred             CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhh--------------CHHHHHHHHH
Confidence            4999999998433       357788888999888888999999999988644210              1245666777


Q ss_pred             HHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCc----------------ccceeecCCCCCcee
Q 031422           82 LAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY----------------QEKFYFNPGDTGFKV  145 (160)
Q Consensus        82 ~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~----------------~e~~~~~~g~~~~~v  145 (160)
                      .+  .++.+++|.+..+++++|||++++++ |+ ..+|+|+||+|.+++                .+..+|++|+. .++
T Consensus       261 ~~--~~~~ii~G~~~~~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~-~~~  335 (418)
T PRK12291        261 LS--HKITIITGALRVEDGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASK-FSD  335 (418)
T ss_pred             hc--cCCcEEEeeeeccCCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCC-Ccc
Confidence            64  57899999887766789999999974 77 689999999877542                34557899986 689


Q ss_pred             EEeCCeeEEEEeccC
Q 031422          146 FQTKFAKIGVGKGFY  160 (160)
Q Consensus       146 ~~~~~~rig~~ICy~  160 (160)
                      +++++.|+|++||||
T Consensus       336 ~~~~g~~ig~lICYE  350 (418)
T PRK12291        336 FTLDGVKFRNAICYE  350 (418)
T ss_pred             eeeCCeEEEEEEeee
Confidence            999999999999998

>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.91  E-value=2.5e-23  Score=148.46  Aligned_cols=153  Identities=28%  Similarity=0.431  Sum_probs=133.8

Q ss_pred             cccEEEEEeCCC--C--CC----HHHHHHHHHHHHHHHHhCCCcEEEeccccccccc-cccchhhHhhhcccCCCChHHH
Q 031422            7 REVVVSALQFAC--T--DD----VSTNLATAERLVRAAHGKGANIILIQELFEGYYF-CQAQREDFFQRAKPYKDHPTIL   77 (160)
Q Consensus         7 ~~~~va~~Q~~~--~--~~----~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~   77 (160)
                      +-++|+++|-.+  +  ..    .+..-+++...++.|+..|+.+|+|.|.|..+|. |...+-.|-+++++..+++..+
T Consensus        72 r~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~  151 (387)
T KOG0808|consen   72 RVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTK  151 (387)
T ss_pred             cEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHH
Confidence            347899999987  2  22    3445567778888888899999999999999874 5555666889999988899999


Q ss_pred             HHHHHHHHcCcEEEecccccc---CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEE
Q 031422           78 KMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIG  154 (160)
Q Consensus        78 ~l~~~a~~~~i~i~~g~~~~~---~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig  154 (160)
                      .++++|+++++.|+....+++   ++.++|++++|+.+|.++++.+|.|+|.-+.|.|+.++..|+.+-|||++.++|||
T Consensus       152 flqklakkhdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgria  231 (387)
T KOG0808|consen  152 FLQKLAKKHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGRIA  231 (387)
T ss_pred             HHHHHHhhCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecceEE
Confidence            999999999999999988874   46799999999999999999999999999999999999999988899999999999


Q ss_pred             EEecc
Q 031422          155 VGKGF  159 (160)
Q Consensus       155 ~~ICy  159 (160)
                      +.|||
T Consensus       232 vnicy  236 (387)
T KOG0808|consen  232 VNICY  236 (387)
T ss_pred             EEeec
Confidence            99999

>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.91  E-value=1.7e-23  Score=148.09  Aligned_cols=149  Identities=26%  Similarity=0.374  Sum_probs=126.8

Q ss_pred             cccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccc------------hhh---HhhhcccC
Q 031422            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ------------RED---FFQRAKPY   70 (160)
Q Consensus         7 ~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~------------~~~---~~~~~~~~   70 (160)
                      ...||+++|... ..|....++++++.+.+|+++|+.||||||.++.||+.+..            +++   +...+...
T Consensus        16 s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIev   95 (337)
T KOG0805|consen   16 SIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIEV   95 (337)
T ss_pred             cceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhhcC
Confidence            457999999987 57888899999999999999999999999999999986531            333   34444444


Q ss_pred             CCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCC-CceeEEeC
Q 031422           71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTK  149 (160)
Q Consensus        71 ~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~-~~~v~~~~  149 (160)
                       .++..++|..+|+++++.+++|..++++..+|.++++++|+|..++.+||..+..    .|+-.|..|+. .+|||+++
T Consensus        96 -~gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTa----lERciWGqGDGSTiPV~dT~  170 (337)
T KOG0805|consen   96 -PGPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTA----LERCIWGQGDGSTIPVYDTP  170 (337)
T ss_pred             -CChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCccccccccccccch----hhheeeccCCCcccceeecc
Confidence             4688999999999999999999999999999999999999999999999996554    57766666542 38999999


Q ss_pred             CeeEEEEeccC
Q 031422          150 FAKIGVGKGFY  160 (160)
Q Consensus       150 ~~rig~~ICy~  160 (160)
                      -+|||.+|||+
T Consensus       171 iGKIG~AICWE  181 (337)
T KOG0805|consen  171 IGKIGAAICWE  181 (337)
T ss_pred             cchhceeeecc
Confidence            99999999995

>PRK13825 conjugal transfer protein TraB; Provisional

Probab=99.86  E-value=9.3e-21  Score=146.07  Aligned_cols=135  Identities=14%  Similarity=0.007  Sum_probs=100.1

Q ss_pred             ccEEEEEeCCCCCC--H---HHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHH
Q 031422            8 EVVVSALQFACTDD--V---STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQEL   82 (160)
Q Consensus         8 ~~~va~~Q~~~~~~--~---~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   82 (160)
                      +.++-.+++++.++  .   ..+..++.+.+++|.+.++|+|||||+++++|....              .   +.+++.
T Consensus       185 p~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~--------------~---~~~~~~  247 (388)
T PRK13825        185 PAGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT--------------E---RLWRES  247 (388)
T ss_pred             CCCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc--------------c---HHHHHH
Confidence            34677788877322  1   233446666777788889999999999998764210              1   123555


Q ss_pred             HHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcc-------cceeecCCCCCceeEEeCCeeEEE
Q 031422           83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-------EKFYFNPGDTGFKVFQTKFAKIGV  155 (160)
Q Consensus        83 a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~-------e~~~~~~g~~~~~v~~~~~~rig~  155 (160)
                      ++++++.+++|..+++++++||++++++++|.. ..|+|+||.+.+++.       |..++.+|....+++++++.|+|+
T Consensus       248 l~~~~i~II~G~~~~~~~~~yNsa~v~~~~G~~-~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~  326 (388)
T PRK13825        248 LRGSDVTVIAGAAVVDPGGYDNVLVAISAGGGR-ILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAP  326 (388)
T ss_pred             HHhCCCeEEEEeeecCCCCceEEEEEEeCCCCe-eeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEE
Confidence            688999999998887788899999999988864 499999998765432       556677774223689999999999


Q ss_pred             EeccC
Q 031422          156 GKGFY  160 (160)
Q Consensus       156 ~ICy~  160 (160)
                      +||||
T Consensus       327 lICYE  331 (388)
T PRK13825        327 LICYE  331 (388)
T ss_pred             EEeee
Confidence            99998

>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.75  E-value=1.5e-17  Score=132.36  Aligned_cols=139  Identities=16%  Similarity=0.160  Sum_probs=97.0

Q ss_pred             cccEEEEEeCCCCC----CHHHHHHHHHHHHH---HHH--hCCCcEEEeccccccccccccchhhHhhhcccCCCChHHH
Q 031422            7 REVVVSALQFACTD----DVSTNLATAERLVR---AAH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL   77 (160)
Q Consensus         7 ~~~~va~~Q~~~~~----~~~~n~~~~~~~i~---~a~--~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   77 (160)
                      ..++|+++|.|+++    |.+.....+...+.   .+.  ..++|+|||||.+++-..        .+      ......
T Consensus       226 ~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~--------~~------~~~~~~  291 (518)
T COG0815         226 PTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDL--------TR------HPDALA  291 (518)
T ss_pred             CceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccch--------hh------cchHHH
Confidence            45899999999953    33333333333232   222  379999999999885211        11      123356


Q ss_pred             HHHHHHHHcCcEEEeccccc--cCC--eeeEEEEEEcCCCCEeEEeeeccCCCCCCccc---------------ceeecC
Q 031422           78 KMQELAKELGVVMPVSFFEE--ANN--AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNP  138 (160)
Q Consensus        78 ~l~~~a~~~~i~i~~g~~~~--~~~--~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e---------------~~~~~~  138 (160)
                      ++.+.+++.+..+++|....  .++  ++|||+++++++|++..+|+|+||.|.++|..               ...|.+
T Consensus       292 ~~~~~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f~~  371 (518)
T COG0815         292 RLAEALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDFSR  371 (518)
T ss_pred             HHHHHHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccccC
Confidence            78888889999999994332  233  48999999999989999999999998877642               235566


Q ss_pred             CCCCceeEEeCC-eeEEEEeccC
Q 031422          139 GDTGFKVFQTKF-AKIGVGKGFY  160 (160)
Q Consensus       139 g~~~~~v~~~~~-~rig~~ICy~  160 (160)
                      |+. ..++.+++ .|+++.||||
T Consensus       372 G~~-~~v~~~~~~~~~~~~ICYE  393 (518)
T COG0815         372 GPG-PQVLLLAGGPKIAPLICYE  393 (518)
T ss_pred             CCC-CcceecCCCceeeceeeeh
Confidence            876 46666665 6699999997

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]

Probab=99.51  E-value=1.3e-14  Score=112.06  Aligned_cols=130  Identities=19%  Similarity=0.234  Sum_probs=109.1

Q ss_pred             CCcccEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHH
Q 031422            5 KRREVVVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA   83 (160)
Q Consensus         5 ~~~~~~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   83 (160)
                      |++.++||.++.|-+ .|.+.|.++|.+.+++|++.||.+-+-||+-++||.|.+-   +++....+   ...+.|.++.
T Consensus         1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DH---f~E~Dt~~---HswE~l~~l~   74 (706)
T KOG2303|consen    1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDH---FLESDTLL---HSWEMLAELV   74 (706)
T ss_pred             CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHh---hccchHHH---HHHHHHHHHH
Confidence            678899999999997 6999999999999999999999999999999999998752   23322221   3344455544


Q ss_pred             ---HHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCC
Q 031422           84 ---KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT  141 (160)
Q Consensus        84 ---~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~  141 (160)
                         ...++.+.+|+|....+..||+.+++ -+|+|+.+..|+.|.+.+.|.|.+||.|+..
T Consensus        75 ~~~~~~~il~diGmPv~hr~~ryNCrv~~-~n~kil~IRpKm~lanDgnyRE~RwFt~W~~  134 (706)
T KOG2303|consen   75 ESPVTQDILCDIGMPVMHRNVRYNCRVLF-LNRKILLIRPKMWLANDGNYRESRWFTPWTR  134 (706)
T ss_pred             cCCCCCCeeEecCCchhhhhhhhccceee-cCCeEEEEcccceeccCCCchhhcccccccc
Confidence               44578888999999999999999999 6899999999999999999999999998764

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=92.61  E-value=1.8  Score=32.62  Aligned_cols=70  Identities=17%  Similarity=0.112  Sum_probs=44.2

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cC-CeeeEEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NAHYNSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~-~~~~Ns~~~i  109 (160)
                      ..+..+.+|+|+++.|-.+....                 .......++..|.+++++++...... ++ ..++=.+.++
T Consensus       161 ~~r~la~~GAdill~ps~~~~~~-----------------~~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~iv  223 (291)
T cd07565         161 IARECAYKGAELIIRIQGYMYPA-----------------KDQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIV  223 (291)
T ss_pred             HHHHHHHCCCeEEEECCcCCCCc-----------------chHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEE
Confidence            44555568999999997543110                 01333456778889999988532222 22 2455667888


Q ss_pred             cCCCCEeEE
Q 031422          110 DADGSDLGL  118 (160)
Q Consensus       110 ~~~G~i~~~  118 (160)
                      +|+|+++..
T Consensus       224 dP~G~ila~  232 (291)
T cd07565         224 NFDGRTLGE  232 (291)
T ss_pred             CCCCCEEEe
Confidence            999998643

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)

Probab=90.80  E-value=2.1  Score=32.53  Aligned_cols=71  Identities=15%  Similarity=0.077  Sum_probs=44.6

Q ss_pred             HHHHHHhC-CCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEc
Q 031422           32 LVRAAHGK-GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIID  110 (160)
Q Consensus        32 ~i~~a~~~-~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~  110 (160)
                      ..+..+.+ |+|+++.|=.|.....                .......++..|.+++++++....... ...+-.+.+++
T Consensus       188 ~~r~la~~~GAdlil~paaw~~~~~----------------~~~w~~l~~arA~eN~~~vi~~N~~g~-~~~~G~S~iv~  250 (299)
T cd07567         188 PALELVKKLGVDDIVFPTAWFSELP----------------FLTAVQIQQAWAYANGVNLLAANYNNP-SAGMTGSGIYA  250 (299)
T ss_pred             HHHHHHHhCCCCEEEECCccCCCCC----------------chhHHHHHHHHHHHcCceEEEecCCCC-cCccccceEEc
Confidence            34444556 9999999965432111                012334567889999999987433322 22346678888


Q ss_pred             CC-CCEeEEe
Q 031422          111 AD-GSDLGLY  119 (160)
Q Consensus       111 ~~-G~i~~~y  119 (160)
                      |. |+++...
T Consensus       251 P~~G~v~a~~  260 (299)
T cd07567         251 GRSGALVYHY  260 (299)
T ss_pred             CCCCcEEEEe
Confidence            99 9988654

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking

>cd07576 R-amidase_like Pseudomonas sp

Probab=90.80  E-value=3.5  Score=30.00  Aligned_cols=68  Identities=19%  Similarity=0.131  Sum_probs=40.9

Q ss_pred             HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCC-eeeEEEEEEc
Q 031422           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN-AHYNSIAIID  110 (160)
Q Consensus        33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~-~~~Ns~~~i~  110 (160)
                      .+..+.+|+|+|+.|=.+...+.                 ......++..|.+++++++...... .++ .+.=.+.+++
T Consensus       151 ~~~~~~~gadii~~p~~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~  213 (254)
T cd07576         151 VRALALAGADLVLVPTALMEPYG-----------------FVARTLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAG  213 (254)
T ss_pred             HHHHHHCCCCEEEECCccCCCcc-----------------hhhhhhhHHHHHhCCCEEEEEcccCCCCCceeeeeeEEEC
Confidence            44455679999999854332111                 1122345667889999987643322 222 3344568888


Q ss_pred             CCCCEeE
Q 031422          111 ADGSDLG  117 (160)
Q Consensus       111 ~~G~i~~  117 (160)
                      |+|+++.
T Consensus       214 p~G~il~  220 (254)
T cd07576         214 PDGTVLA  220 (254)
T ss_pred             CCCCEeE
Confidence            9998763

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=90.09  E-value=4.2  Score=29.72  Aligned_cols=69  Identities=16%  Similarity=0.159  Sum_probs=40.8

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec-cccccCCeee-EEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS-FFEEANNAHY-NSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g-~~~~~~~~~~-Ns~~~i  109 (160)
                      ..+.++.+|+|+++.|=.+...              .   ........+..|.+++++++.. ..-..++..+ =.+.++
T Consensus       154 ~~r~~~~~gadll~~ps~~~~~--------------~---~~~~~~~~~~rA~En~~~vv~~n~~g~~~~~~~~G~S~ii  216 (258)
T cd07584         154 VARILTLKGAEVIFCPSAWREQ--------------D---ADIWDINLPARALENTVFVAAVNRVGNEGDLVLFGKSKIL  216 (258)
T ss_pred             HHHHHHHCCCcEEEECCccCCC--------------C---chHHHHHHHHHHHhCCcEEEEECccccCCCceecceeEEE
Confidence            4556667899999999532210              0   0122223456678899998852 2222233333 357788


Q ss_pred             cCCCCEeE
Q 031422          110 DADGSDLG  117 (160)
Q Consensus       110 ~~~G~i~~  117 (160)
                      +++|+++.
T Consensus       217 ~p~G~il~  224 (258)
T cd07584         217 NPRGQVLA  224 (258)
T ss_pred             CCCCceee
Confidence            89999763

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=88.67  E-value=2.8  Score=30.76  Aligned_cols=69  Identities=22%  Similarity=0.155  Sum_probs=40.4

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cC-Ce-eeEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NA-HYNSIAI  108 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~-~~-~~Ns~~~  108 (160)
                      ..+.++.+|+|+|+.|=.+.....                ...+...++..|.+++++++...... .+ +. .+=.+.+
T Consensus       161 ~~r~~~~~gadli~~p~~~~~~~~----------------~~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i  224 (265)
T cd07572         161 LARALARQGADILTVPAAFTMTTG----------------PAHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMI  224 (265)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCcc----------------hHHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEE
Confidence            455666789999999953321100                01222334666888999987743322 22 22 2335777


Q ss_pred             EcCCCCEe
Q 031422          109 IDADGSDL  116 (160)
Q Consensus       109 i~~~G~i~  116 (160)
                      ++|+|+++
T Consensus       225 ~~p~G~il  232 (265)
T cd07572         225 VDPWGEVL  232 (265)
T ss_pred             ECCCcHHH
Confidence            88999865

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

>PRK13286 amiE acylamide amidohydrolase; Provisional

Probab=88.35  E-value=6.1  Score=30.69  Aligned_cols=70  Identities=21%  Similarity=0.202  Sum_probs=44.1

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cC-CeeeEEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NAHYNSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~-~~~~Ns~~~i  109 (160)
                      ..+..+.+|+|+|+-|-.+..+.                 .......++..|.+++++++...... ++ -.++=.+.++
T Consensus       174 ~~R~la~~GAelii~psa~~~~~-----------------~~~~~~~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Iv  236 (345)
T PRK13286        174 IWRDCAMKGAELIVRCQGYMYPA-----------------KEQQVLVAKAMAWANNCYVAVANAAGFDGVYSYFGHSAII  236 (345)
T ss_pred             HHHHHHHcCCeEEEEccccCCCc-----------------hHHHHHHHHHHHHHCCCEEEEEecccccCCceeeeeEEEE
Confidence            45556678999999885432110                 01233456777889999987743322 22 2345668889


Q ss_pred             cCCCCEeEE
Q 031422          110 DADGSDLGL  118 (160)
Q Consensus       110 ~~~G~i~~~  118 (160)
                      +++|+++..
T Consensus       237 dp~G~vla~  245 (345)
T PRK13286        237 GFDGRTLGE  245 (345)
T ss_pred             CCCCcEEEe
Confidence            999998644

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=88.19  E-value=5.5  Score=29.14  Aligned_cols=73  Identities=19%  Similarity=0.075  Sum_probs=42.0

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCC-eeeEEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN-AHYNSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~-~~~Ns~~~i  109 (160)
                      ..+..+.+|+|+|+.|=.+.......             ....+...++..|.+++++++...... .++ .+.=.++++
T Consensus       148 ~~r~l~~~gadlil~p~~~~~~~~~~-------------~~~~~~~~~~~rA~e~~~~vv~~n~~g~~~~~~~~G~S~i~  214 (261)
T cd07585         148 NVRATALLGAEILFAPHATPGTTSPK-------------GREWWMRWLPARAYDNGVFVAACNGVGRDGGEVFPGGAMIL  214 (261)
T ss_pred             HHHHHHHCCCCEEEECCccCCCCCcc-------------hHHHHHHHhHHHHhhcCeEEEEecccccCCCceecceEEEE
Confidence            34556678999999995433211000             001233345677888999987632222 222 233456888


Q ss_pred             cCCCCEeE
Q 031422          110 DADGSDLG  117 (160)
Q Consensus       110 ~~~G~i~~  117 (160)
                      +|+|+++.
T Consensus       215 ~p~G~v~~  222 (261)
T cd07585         215 DPYGRVLA  222 (261)
T ss_pred             CCCCCEEe
Confidence            89998764

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=88.17  E-value=3.6  Score=32.18  Aligned_cols=67  Identities=15%  Similarity=-0.011  Sum_probs=40.6

Q ss_pred             HHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c--------------
Q 031422           34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A--------------   98 (160)
Q Consensus        34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~--------------   98 (160)
                      +..+.+|+|+|+.|=.+.....                ...+...++..|.+++++++...... +              
T Consensus       235 r~la~~GAdiil~Psa~~~~~~----------------~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~  298 (363)
T cd07587         235 LMYGLNGAEIVFNPSATVGALS----------------EPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPA  298 (363)
T ss_pred             HHHHHcCCcEEEECCCcCCCCc----------------hHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence            3445679999999965421100                01223446677888999987532211 1              


Q ss_pred             ---CCeeeEEEEEEcCCCCEe
Q 031422           99 ---NNAHYNSIAIIDADGSDL  116 (160)
Q Consensus        99 ---~~~~~Ns~~~i~~~G~i~  116 (160)
                         ...++-.+++++|+|+++
T Consensus       299 ~~~~~~f~G~S~Ii~P~G~il  319 (363)
T cd07587         299 HKDFGHFYGSSYVAAPDGSRT  319 (363)
T ss_pred             ccccccccceeEEECCCCCCc
Confidence               023566789999999864

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=88.11  E-value=1.1  Score=32.87  Aligned_cols=71  Identities=14%  Similarity=0.070  Sum_probs=50.0

Q ss_pred             HhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc---cCCeeeEEEEEEcCCC
Q 031422           37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE---ANNAHYNSIAIIDADG  113 (160)
Q Consensus        37 ~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~---~~~~~~Ns~~~i~~~G  113 (160)
                      .+.||+++.+|-.|..--.                ...+--.|+..|-+.+++++...-..   ..+.-|--+++++|.|
T Consensus       183 R~~gA~iLtyPSAFT~~TG----------------~AHWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWG  246 (295)
T KOG0807|consen  183 RKMGAQILTYPSAFTIKTG----------------EAHWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWG  246 (295)
T ss_pred             HHcCCcEEeccchhhhccc----------------HHHHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchh
Confidence            3679999999987652110                01222346777889999998854432   3456788899999999


Q ss_pred             CEeEEeeecc
Q 031422          114 SDLGLYRKSH  123 (160)
Q Consensus       114 ~i~~~y~K~~  123 (160)
                      .+++.+....
T Consensus       247 tVva~~se~~  256 (295)
T KOG0807|consen  247 TVVARCSERT  256 (295)
T ss_pred             hhheecCCCC
Confidence            9999888764

>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=87.31  E-value=6.9  Score=29.14  Aligned_cols=71  Identities=17%  Similarity=0.010  Sum_probs=40.7

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c----CCeeeEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A----NNAHYNSI  106 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~----~~~~~Ns~  106 (160)
                      ..+..+.+|+|+++.|=.+..++.                .......++..|.+++++++...... .    ...++-.+
T Consensus       170 ~~r~la~~Ga~li~~ps~~~~~~~----------------~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S  233 (287)
T cd07568         170 GWRALGLNGAEIVFNPSATVAGLS----------------EYLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSS  233 (287)
T ss_pred             HHHHHHHCCCeEEEECCcCCCCCc----------------hhhhHHHHHHHHHHCCcEEEEeccccccCCCccceEecee
Confidence            345556789999999854332111                01111234556778888887422111 1    12445667


Q ss_pred             EEEcCCCCEeEE
Q 031422          107 AIIDADGSDLGL  118 (160)
Q Consensus       107 ~~i~~~G~i~~~  118 (160)
                      .+++|+|+++..
T Consensus       234 ~ii~p~G~il~~  245 (287)
T cd07568         234 YFVDPRGQFVAS  245 (287)
T ss_pred             EEECCCceEEEe
Confidence            888999998643

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional

Probab=87.19  E-value=3.5  Score=30.36  Aligned_cols=57  Identities=14%  Similarity=-0.023  Sum_probs=37.8

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422           21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV   92 (160)
Q Consensus        21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~   92 (160)
                      +.....+.+.+..+...+++..+++|||..-+...            .   -.++..-.-.+|.+.++.|+-
T Consensus       120 ~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g------------~---l~~Fk~Ga~~lA~~~~~PIvP  176 (245)
T PRK15018        120 NRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR------------G---LLPFKTGAFHAAIAAGVPIIP  176 (245)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCC------------C---CCCccHHHHHHHHHcCCCEEE
Confidence            44555666777777777778899999997554211            0   124556667778888888753

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=85.91  E-value=10  Score=27.91  Aligned_cols=73  Identities=14%  Similarity=0.090  Sum_probs=41.2

Q ss_pred             HHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCe-eeEEEEEEcC
Q 031422           34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNA-HYNSIAIIDA  111 (160)
Q Consensus        34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~-~~Ns~~~i~~  111 (160)
                      +..+.+|+|+|+.|=.+.......         ..  ........++..|.+++++++. +..-.+++. ++=.+.+++|
T Consensus       154 r~~~~~ga~li~~ps~~~~~~~~~---------~~--~~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p  222 (268)
T cd07580         154 RLLALQGADIVCVPTNWVPMPRPP---------EG--GPPMANILAMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGP  222 (268)
T ss_pred             HHHHHcCCCEEEEcCcccccCCcc---------cc--cCcHHHHhhHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECC
Confidence            445667999999997554221100         00  0011222345567789999876 332223333 3345689999


Q ss_pred             CCCEeE
Q 031422          112 DGSDLG  117 (160)
Q Consensus       112 ~G~i~~  117 (160)
                      +|+++.
T Consensus       223 ~G~~~~  228 (268)
T cd07580         223 DGWPLA  228 (268)
T ss_pred             CCCeee
Confidence            999763

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PLN00202 beta-ureidopropionase

Probab=85.15  E-value=7.2  Score=31.01  Aligned_cols=68  Identities=15%  Similarity=-0.024  Sum_probs=41.3

Q ss_pred             HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c----------C--
Q 031422           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A----------N--   99 (160)
Q Consensus        33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~----------~--   99 (160)
                      .+..+.+|+|+|+.|=.+.....                ...+...++..|.+++++++...... +          +  
T Consensus       255 ~r~la~~GAdiIl~Psa~~~~~~----------------~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~  318 (405)
T PLN00202        255 WLAFGLNGAEIVFNPSATVGDLS----------------EPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKP  318 (405)
T ss_pred             HHHHHHCCCcEEEECCCCCCccC----------------HHHHHHHHHHHHHhcCCEEEEeccccccccccccccccccc
Confidence            33345679999999965431100                01233456777888999987632211 1          1  


Q ss_pred             -----CeeeEEEEEEcCCCCEe
Q 031422          100 -----NAHYNSIAIIDADGSDL  116 (160)
Q Consensus       100 -----~~~~Ns~~~i~~~G~i~  116 (160)
                           ..++=.+++++|+|+++
T Consensus       319 ~~~~~~~f~G~S~Iv~P~G~vl  340 (405)
T PLN00202        319 QHKDFGHFYGSSHFSAPDASCT  340 (405)
T ss_pred             cccccccccceeEEEcCCCCEe
Confidence                 23567788999999875

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=85.10  E-value=7.5  Score=28.29  Aligned_cols=70  Identities=17%  Similarity=0.072  Sum_probs=41.0

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec-cccccC-CeeeEEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS-FFEEAN-NAHYNSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g-~~~~~~-~~~~Ns~~~i  109 (160)
                      ..+..+.+|+|+|+.|=.+... .                ...+...++..|.+++++++.. ..-..+ ..++=.+.++
T Consensus       151 ~~r~~~~~ga~ll~~ps~~~~~-~----------------~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii  213 (253)
T cd07583         151 LFRKLALEGAEILFVPAEWPAA-R----------------IEHWRTLLRARAIENQAFVVACNRVGTDGGNEFGGHSMVI  213 (253)
T ss_pred             HHHHHHHcCCcEEEECCCCCCC-c----------------hHHHHHHHHHHHHHhCCEEEEEcCcccCCCceecceeEEE
Confidence            4566667899999999543210 0                0122223456788889988753 222222 2334456778


Q ss_pred             cCCCCEeEE
Q 031422          110 DADGSDLGL  118 (160)
Q Consensus       110 ~~~G~i~~~  118 (160)
                      +|+|+++..
T Consensus       214 ~p~G~il~~  222 (253)
T cd07583         214 DPWGEVLAE  222 (253)
T ss_pred             CCCchhhee
Confidence            899987643

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase

Probab=85.05  E-value=12  Score=27.54  Aligned_cols=75  Identities=17%  Similarity=0.054  Sum_probs=42.8

Q ss_pred             HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-c-----cCCeeeEEE
Q 031422           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-E-----ANNAHYNSI  106 (160)
Q Consensus        33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~-----~~~~~~Ns~  106 (160)
                      .+..+.+|+|+|+.|=.+..... ..        ... ....+...++..|.+++++++..... .     .+..++=.+
T Consensus       159 ~r~~a~~ga~lil~ps~~~~~~~-~~--------~~~-~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S  228 (279)
T TIGR03381       159 ARAMALMGAEVLFYPTAIGSEPH-DP--------DLD-SRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSS  228 (279)
T ss_pred             HHHHHHcCCCEEEecCccCCCCc-cc--------ccc-cHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeE
Confidence            45556789999999865432110 00        000 00123344556688899998763222 1     123455667


Q ss_pred             EEEcCCCCEeE
Q 031422          107 AIIDADGSDLG  117 (160)
Q Consensus       107 ~~i~~~G~i~~  117 (160)
                      .+++|+|+++.
T Consensus       229 ~i~~p~G~il~  239 (279)
T TIGR03381       229 FIADHTGELVA  239 (279)
T ss_pred             EEECCCCcEee
Confidence            89999999874

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

Probab=85.04  E-value=9.3  Score=27.56  Aligned_cols=68  Identities=26%  Similarity=0.228  Sum_probs=43.6

Q ss_pred             HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-cc-CCeeeEEEEEEc
Q 031422           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-NNAHYNSIAIID  110 (160)
Q Consensus        33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~-~~~~~Ns~~~i~  110 (160)
                      .+.+..+|+|+|+.|=......                 ........+..|.+++++++..... .. +...+-.+.+++
T Consensus       152 ~~~~~~~g~dli~~ps~~~~~~-----------------~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~G~S~i~~  214 (253)
T cd07197         152 ARELALKGADIILVPAAWPTAR-----------------REHWELLLRARAIENGVYVVAANRVGEEGGLEFAGGSMIVD  214 (253)
T ss_pred             HHHHHHCCCcEEEECCcCCCcc-----------------hHHHHHHHHHHHHHhCCeEEEecCCCCCCCccccceeEEEC
Confidence            3445677999999998644210                 0244456777889999998774332 22 234445678888


Q ss_pred             CCCCEeE
Q 031422          111 ADGSDLG  117 (160)
Q Consensus       111 ~~G~i~~  117 (160)
                      |.|+++.
T Consensus       215 p~G~~~~  221 (253)
T cd07197         215 PDGEVLA  221 (253)
T ss_pred             CCCceee
Confidence            9998763

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and

>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=85.00  E-value=9.3  Score=28.07  Aligned_cols=75  Identities=13%  Similarity=0.042  Sum_probs=43.2

Q ss_pred             HHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cC-CeeeEEEEEEcC
Q 031422           34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NAHYNSIAIIDA  111 (160)
Q Consensus        34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~-~~~~Ns~~~i~~  111 (160)
                      +..+.+|+|+|+.|=.+.....  .        ............++..|.+++++++...... .+ ..++-.+.+++|
T Consensus       153 ~~~~~~ga~lil~ps~~~~~~~--~--------~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~G~S~ii~p  222 (269)
T cd07586         153 YLLALDGADVIFIPANSPARGV--G--------GDFDNEENWETLLKFYAMMNGVYVVFANRVGVEDGVYFWGGSRVVDP  222 (269)
T ss_pred             HHHHHCCCCEEEEeCCCccccC--c--------cccchhHHHHHHHHHHHHHhCCeEEEEeeecCcCCceEeCCcEEECC
Confidence            3445689999999965432110  0        0000001234456777899999987743322 22 344455788889


Q ss_pred             CCCEeEE
Q 031422          112 DGSDLGL  118 (160)
Q Consensus       112 ~G~i~~~  118 (160)
                      +|+++..
T Consensus       223 ~G~il~~  229 (269)
T cd07586         223 DGEVVAE  229 (269)
T ss_pred             CCCEEEe
Confidence            9998743

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=84.82  E-value=13  Score=27.97  Aligned_cols=70  Identities=16%  Similarity=0.047  Sum_probs=41.2

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccccc-C----Ceee-EE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-N----NAHY-NS  105 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~----~~~~-Ns  105 (160)
                      ..+..+.+|+|+|+.|=.+.....                .......++..|.+++++++....... +    ...| -.
T Consensus       181 ~~r~la~~Gadlil~psa~~~~~~----------------~~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~  244 (294)
T cd07582         181 VARGLAMNGAEVLLRSSSEVPSVE----------------LDPWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGG  244 (294)
T ss_pred             HHHHHHHCCCcEEEEcCCCCCCcc----------------hhhHHHHHHHHHHhcCCEEEEecccccCcccccCceecce
Confidence            345556679999999875432110                012223456778889999885322221 1    1223 45


Q ss_pred             EEEEcCCCCEeE
Q 031422          106 IAIIDADGSDLG  117 (160)
Q Consensus       106 ~~~i~~~G~i~~  117 (160)
                      +.+++|+|+++.
T Consensus       245 S~ivdp~G~vla  256 (294)
T cd07582         245 SMIVDYKGRVLA  256 (294)
T ss_pred             eEEECCCCCEEE
Confidence            677789999864

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

Probab=84.57  E-value=10  Score=27.73  Aligned_cols=69  Identities=16%  Similarity=0.062  Sum_probs=41.3

Q ss_pred             HHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCCe-eeEEEEEEcC
Q 031422           34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNA-HYNSIAIIDA  111 (160)
Q Consensus        34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~~-~~Ns~~~i~~  111 (160)
                      +..+..|+|+++.|=.+.  +...          .   .......++..|.+++++++...... .++. +.=.+.+++|
T Consensus       156 r~~~~~ga~ll~~ps~~~--~~~~----------~---~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p  220 (261)
T cd07570         156 AELALAGADLILNLSASP--FHLG----------K---QDYRRELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADN  220 (261)
T ss_pred             HHHHHcCCcEEEEeCCCc--cccC----------c---HHHHHHHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcC
Confidence            445567999999996432  1100          0   01223457788899999987743322 2222 2344688899


Q ss_pred             CCCEeE
Q 031422          112 DGSDLG  117 (160)
Q Consensus       112 ~G~i~~  117 (160)
                      +|+++.
T Consensus       221 ~G~vl~  226 (261)
T cd07570         221 DGELLA  226 (261)
T ss_pred             CCCEEE
Confidence            999874

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=82.73  E-value=12  Score=27.22  Aligned_cols=69  Identities=19%  Similarity=0.094  Sum_probs=40.4

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcC
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA  111 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~  111 (160)
                      ..+..+.+|+|+++.|=.+..+..               .........+..|.+++++++......  ....=.+.++++
T Consensus       155 ~~~~~~~~ga~lil~ps~~~~~~~---------------~~~~~~~~~~~rA~en~~~vv~~n~~g--~~~~G~S~i~~p  217 (255)
T cd07581         155 LARALALAGADVIVVPAAWVAGPG---------------KEEHWETLLRARALENTVYVAAAGQAG--PRGIGRSMVVDP  217 (255)
T ss_pred             HHHHHHHCCCcEEEECCcccCCCC---------------chHHHHHHHHHHHHHhCCEEEEEcCcC--CCcccceEEECC
Confidence            445556789999999854321110               001333455667788999987642221  122334678889


Q ss_pred             CCCEeE
Q 031422          112 DGSDLG  117 (160)
Q Consensus       112 ~G~i~~  117 (160)
                      +|.++.
T Consensus       218 ~G~i~~  223 (255)
T cd07581         218 LGVVLA  223 (255)
T ss_pred             Ccceee
Confidence            998764

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>COG0388 Predicted amidohydrolase [General function prediction only]

Probab=82.59  E-value=13  Score=27.55  Aligned_cols=65  Identities=20%  Similarity=0.097  Sum_probs=43.9

Q ss_pred             HhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccC---CeeeEEEEEEcCCC
Q 031422           37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADG  113 (160)
Q Consensus        37 ~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G  113 (160)
                      +..|+++++.|-.+.....                .......++..|.+++++++.......+   ...+-.+++++|+|
T Consensus       163 a~~Gaeii~~p~a~~~~~~----------------~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G  226 (274)
T COG0388         163 ALGGAELLLVPAAWPAERG----------------LDHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDG  226 (274)
T ss_pred             HhcCCeEEEEcCCCCCccc----------------HHHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCc
Confidence            4458999999997664321                0123334677788899999875433322   46778889999999


Q ss_pred             CEeE
Q 031422          114 SDLG  117 (160)
Q Consensus       114 ~i~~  117 (160)
                      +++.
T Consensus       227 ~v~~  230 (274)
T COG0388         227 EVLA  230 (274)
T ss_pred             cEEe
Confidence            8653

>PLN02798 nitrilase

Probab=82.14  E-value=13  Score=27.73  Aligned_cols=70  Identities=17%  Similarity=0.164  Sum_probs=42.1

Q ss_pred             HHHHHH-hCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc---cCCeeeEEEE
Q 031422           32 LVRAAH-GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE---ANNAHYNSIA  107 (160)
Q Consensus        32 ~i~~a~-~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~---~~~~~~Ns~~  107 (160)
                      ..+.++ .+|+|+|+.|-.+.....                .......++..|.+++++++...-..   .+...+=.+.
T Consensus       171 ~~r~~a~~~Gadlil~ps~~~~~~~----------------~~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~  234 (286)
T PLN02798        171 LYQQLRFEHGAQVLLVPSAFTKPTG----------------EAHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHAL  234 (286)
T ss_pred             HHHHHHHhCCCcEEEECCcCCCCCc----------------HHHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeE
Confidence            345555 789999999964321100                01222345677888999987632221   1233445678


Q ss_pred             EEcCCCCEeE
Q 031422          108 IIDADGSDLG  117 (160)
Q Consensus       108 ~i~~~G~i~~  117 (160)
                      +++|+|+++.
T Consensus       235 ii~p~G~il~  244 (286)
T PLN02798        235 IIDPWGTVVA  244 (286)
T ss_pred             EECCCccchh
Confidence            8899998863

>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=81.88  E-value=17  Score=26.61  Aligned_cols=65  Identities=20%  Similarity=0.008  Sum_probs=39.1

Q ss_pred             HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c----CC-eeeEEE
Q 031422           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A----NN-AHYNSI  106 (160)
Q Consensus        33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~----~~-~~~Ns~  106 (160)
                      .+..+.+|+|+|+.|-.+...                    .....++..|.+++++++...... .    .+ ...-.+
T Consensus       150 ~r~~~~~Gadli~~ps~~~~~--------------------~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S  209 (259)
T cd07577         150 ARTLALKGADIIAHPANLVLP--------------------YCPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKS  209 (259)
T ss_pred             HHHHHHcCCCEEEECCccCCc--------------------hhhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeee
Confidence            455556899999999643211                    111234667788899987532211 1    12 234557


Q ss_pred             EEEcCCCCEeE
Q 031422          107 AIIDADGSDLG  117 (160)
Q Consensus       107 ~~i~~~G~i~~  117 (160)
                      .+++|+|+++.
T Consensus       210 ~i~~p~G~i~~  220 (259)
T cd07577         210 QITSPKGEVLA  220 (259)
T ss_pred             EEECCCCCEEe
Confidence            88999999864

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PLN02504 nitrilase

Probab=80.93  E-value=13  Score=28.92  Aligned_cols=66  Identities=20%  Similarity=0.086  Sum_probs=41.0

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc---------------
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE---------------   96 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~---------------   96 (160)
                      ..+..+.+|+|+++.|=.+    +                ...+...++..|.+++++++.....               
T Consensus       194 ~~r~la~~Gadii~~p~~~----~----------------~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~  253 (346)
T PLN02504        194 LRTAMYAKGIEIYCAPTAD----S----------------RETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFS  253 (346)
T ss_pred             HHHHHHHCCCeEEEECCCC----C----------------chhHHHHHHHHHHccCcEEEEecccccccccCcccccccc
Confidence            3445557899999998432    1                0133345677899999998763221               


Q ss_pred             -cc-----C-CeeeEEEEEEcCCCCEeE
Q 031422           97 -EA-----N-NAHYNSIAIIDADGSDLG  117 (160)
Q Consensus        97 -~~-----~-~~~~Ns~~~i~~~G~i~~  117 (160)
                       ..     + ..++=.+++++|+|+++.
T Consensus       254 G~~~~~~~~~~~~~G~S~IvdP~G~vla  281 (346)
T PLN02504        254 GTEEDLTPDSIVCAGGSVIISPSGTVLA  281 (346)
T ss_pred             cccccccccccccCcceEEECCCCCEec
Confidence             00     1 123456889999998863

>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=80.64  E-value=12  Score=28.04  Aligned_cols=84  Identities=10%  Similarity=0.008  Sum_probs=44.0

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhh--hcccCCC-ChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQ--RAKPYKD-HPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAI  108 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~--~~~~~~~-~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~  108 (160)
                      ..+..+.+|+|+|+.|-.+...+. ..|......  ...+... ....+.++..|.+++++++..........+.-.+.+
T Consensus       144 ~~r~~a~~Ga~ii~~psa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv~aN~~g~~~~~~G~S~i  222 (279)
T cd07579         144 AGRVLALRGCDLLACPAAIAIPFV-GAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFAFANVPDPARGYTGWSGV  222 (279)
T ss_pred             HHHHHHHCCCCEEEECCCcCCccc-cccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEEEeeccCCccccccccEE
Confidence            345556789999999987543211 000000000  0000000 012335677889999999875333222233344678


Q ss_pred             EcCCCCEe
Q 031422          109 IDADGSDL  116 (160)
Q Consensus       109 i~~~G~i~  116 (160)
                      ++|.|.++
T Consensus       223 i~P~G~v~  230 (279)
T cd07579         223 FGPDTFAF  230 (279)
T ss_pred             ECCCeEEc
Confidence            88998764

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

Probab=80.56  E-value=21  Score=26.45  Aligned_cols=78  Identities=18%  Similarity=0.021  Sum_probs=42.5

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c-----CCeeeEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A-----NNAHYNS  105 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~-----~~~~~Ns  105 (160)
                      ..+....+|+|+++.|=.+-  +...+    ......  ........++..|.+++++++...... .     +-.+.=.
T Consensus       159 ~~r~~~~~gadlil~ps~~~--~~~~~----~~~~~~--~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~  230 (284)
T cd07573         159 AARLMALQGAEILFYPTAIG--SEPQE----PPEGLD--QRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGS  230 (284)
T ss_pred             HHHHHHHCCCCEEEecCccc--CCCCC----ccccCC--chHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeece
Confidence            34556678999999985432  11000    000000  011333445667888999988632221 1     2234456


Q ss_pred             EEEEcCCCCEeE
Q 031422          106 IAIIDADGSDLG  117 (160)
Q Consensus       106 ~~~i~~~G~i~~  117 (160)
                      +.+++|+|+++.
T Consensus       231 S~i~~p~G~i~~  242 (284)
T cd07573         231 SFIADPFGEILA  242 (284)
T ss_pred             eEEECCCCCeee
Confidence            788889998763

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
1j31_A	262	Crystal Structure Of Hypothetical Protein Ph0642 Fr		8e-18
3ivz_A	262	Crystal Structure Of Hyperthermophilic Nitrilase Le		1e-15
2vhh_A	405	Crystal Structure Of A Pyrimidine Degrading Enzyme		1e-13
2w1v_A	276	Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso		7e-10
1uf4_A	303	Crystal Structure Of C171aV236A MUTANT OF N-Carbamy		2e-09
1erz_A	303	Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh		2e-09
1fo6_A	304	Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A		3e-09
2ggl_A	304	The Mutant A222c Of Agrobacterium Radiobacter N-Car		3e-09
2ggk_A	304	The Mutant A302c Of Agrobacterium Radiobacter N-Car		3e-09

>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262

Iteration: 1
 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 8/136 (5%)
Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKM 79
           ++  N + AE+L++ A  +GA ++++ ELF+ GY F    RE+ F  A+   +  T   +
Sbjct: 15  ELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNF--ESREEVFDVAQQIPEGETTTFL 72
Query: 80  QELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPG 139
            ELA+ELG+ +     E++ N  YNS  ++   G  +G YRK H+     Y+EK +F PG
Sbjct: 73  XELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGY-IGKYRKIHL----FYREKVFFEPG 127
Query: 140 DTGFKVFQTKFAKIGV 155
           D GFKVF   FAK+GV
Sbjct: 128 DLGFKVFDIGFAKVGV 143

>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 25  NLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83
           N + AE+L++ A  +GA ++++ ELF+ GY F    RE+ F+ A+   +  T   + ++A
Sbjct: 19  NYSKAEKLIKEASKQGAQLVVLPELFDTGYNF--ETREEVFEIAQKIPEGETTTFLMDVA 76
Query: 84  KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF 143
           ++ GV +     E+  +  YNS  ++   G  +G YRK H+     Y+EKF+F PGD GF
Sbjct: 77  RDTGVYIVAGTAEKDGDVLYNSAVVVGPRGF-IGKYRKIHL----FYREKFFFEPGDLGF 131
Query: 144 KVFQTKFAKIGV 155
           +VF   F K+GV
Sbjct: 132 RVFDLGFMKVGV 143

>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 12/163 (7%)
Query: 5   KRREVVVSALQFACTDDVSTNLAT--------AERLVRAAHGKGANIILIQELFE-GYYF 55
           KRR V V A+Q +     +  +           + +++AA   G NI+  QE +   + F
Sbjct: 69  KRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF 128
Query: 56  CQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE---EANNAHYNSIAIIDAD 112
           C  ++  + + A+  ++ PT   + ELAK   +V+  S  E   E     +N+  +I   
Sbjct: 129 CTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNS 188
Query: 113 GSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
           G  LG +RK+HIP    + E  Y+  G+TG  VF+T+F K+ V
Sbjct: 189 GRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAV 231

>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           ++ +Q   +   S NL  A  LVR A  +GANI+ + E F   Y        +F      
Sbjct: 6   LALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPY-----GTTYFPDYAEK 60
Query: 71  KDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDG 127
               +  K+ E+AKE  + ++  S  EE     YN+ ++   DGS L  +RK H+   D 
Sbjct: 61  IPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDV 120
Query: 128 PG---YQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           PG   +QE    +PGD+ F  F T + K+G+G
Sbjct: 121 PGKITFQESKTLSPGDS-FSTFDTPYCKVGLG 151

>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D- Amino Acid Amidohydrolase Length = 303

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 21/142 (14%)
Query: 32  LVRAAHGKGANIILIQEL-----FEGYYFC-QAQREDFFQRAKPYKDHPTILKMQELAKE 85
           ++  A  +GAN I+  EL     F  ++F  +A+ + F++   P    P +  + E A E
Sbjct: 30  MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMP---GPVVRPLFEKAAE 86
Query: 86  LGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EK 133
           LG+   + +     E      +N+  ++D  G  +G YRK H+P    Y+        EK
Sbjct: 87  LGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK 146
Query: 134 FYFNPGDTGFKVFQTKFAKIGV 155
            YF PGD GF V+    AK+G+
Sbjct: 147 RYFEPGDLGFPVYDVDAAKMGM 168

>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 21/142 (14%)
Query: 32  LVRAAHGKGANIILIQEL-----FEGYYFC-QAQREDFFQRAKPYKDHPTILKMQELAKE 85
           ++  A  +GAN I+  EL     F  ++F  +A+ + F++   P    P +  + E A E
Sbjct: 30  MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMP---GPVVRPLFEKAAE 86
Query: 86  LGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EK 133
           LG+   + +     E      +N+  ++D  G  +G YRK H+P    Y+        EK
Sbjct: 87  LGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK 146
Query: 134 FYFNPGDTGFKVFQTKFAKIGV 155
            YF PGD GF V+    AK+G+
Sbjct: 147 RYFEPGDLGFPVYDVDAAKMGM 168

>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
           + + + RE VV  L      D+ TN A+          +G N I+  EL     F  ++F
Sbjct: 15  IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56  C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
             +A+ + F++   P    P +  + E A ELG+   + +     E      +N+  ++D
Sbjct: 60  TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGV 155
             G  +G YRK H+P    Y+        EK YF PGD GF V+    AK+G+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGM 169

>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
           + + + RE VV  L      D+ TN A+          +G N I+  EL     F  ++F
Sbjct: 15  IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56  C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
             +A+ + F++   P    P +  + E A ELG+   + +     E      +N+  ++D
Sbjct: 60  TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGV 155
             G  +G YRK H+P    Y+        EK YF PGD GF V+    AK+G+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGM 169

>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
           + + + RE VV  L      D+ TN A+          +G N I+  EL     F  ++F
Sbjct: 15  IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56  C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
             +A+ + F++   P    P +  + E A ELG+   + +     E      +N+  ++D
Sbjct: 60  TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGV 155
             G  +G YRK H+P    Y+        EK YF PGD GF V+    AK+G+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGM 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	1e-64
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	1e-61
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	4e-59
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	4e-47
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	1e-46
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	1e-34
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	7e-31
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	1e-25
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	2e-23
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	3e-23
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	5e-19
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	8e-10
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	4e-09
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	1e-08
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	5e-08

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405

 Score =  201 bits (514), Expect = 1e-64
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 5   KRREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYF 55
           KRR V V A+Q +                    + +++AA   G NI+  QE +   + F
Sbjct: 69  KRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF 128

Query: 56  CQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE---ANNAHYNSIAIIDAD 112
           C  ++  + + A+  ++ PT   + ELAK   +V+  S  E         +N+  +I   
Sbjct: 129 CTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNS 188

Query: 113 GSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           G  LG +RK+HIP    + E  Y+  G+TG  VF+T+F K+ V 
Sbjct: 189 GRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAVN 232

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262

 Score =  189 bits (483), Expect = 1e-61
 Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 7/147 (4%)

Query: 11  VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKP 69
           V+ +Q      +   N + AE+L++ A  +GA ++++ ELF+  Y  +  RE+ F+ A+ 
Sbjct: 4   VAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFE-TREEVFEIAQK 62

Query: 70  YKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPG 129
             +  T   + ++A++ GV +     E+  +  YNS  ++   G  +G YRK H+     
Sbjct: 63  IPEGETTTFLMDVARDTGVYIVAGTAEKDGDVLYNSAVVVGPRGF-IGKYRKIHL----F 117

Query: 130 YQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           Y+EKF+F PGD GF+VF   F K+GV 
Sbjct: 118 YREKFFFEPGDLGFRVFDLGFMKVGVM 144

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303

 Score =  184 bits (469), Expect = 4e-59
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 18/168 (10%)

Query: 7   REVVVSALQF---ACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ---AQR 60
           R+++++  Q    A  +     +     ++  A  +GAN I+  EL    +F +      
Sbjct: 2   RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDE 61

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA----NNAHYNSIAIIDADGSDL 116
            +     +     P +  + E A ELG+   + + E          +N+  ++D  G  +
Sbjct: 62  AELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIV 121

Query: 117 GLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGVG 156
           G YRK H+P    Y+        EK YF PGD GF V+    AK+G+ 
Sbjct: 122 GKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMF 169

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283

 Score =  153 bits (389), Expect = 4e-47
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 9/153 (5%)

Query: 5   KRREVVVSALQFACTD-DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDF 63
           +   + ++ +Q      D   NL   +     A  +GA ++L  ELF   Y         
Sbjct: 17  RGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVP----SQI 72

Query: 64  FQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAH-YNSIAIIDADGSDLGLYRKS 122
             +    +      +++ +A++ G+ +  S            +  + D  G  L  Y+K 
Sbjct: 73  CAQVSAEQVDAARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKV 132

Query: 123 HIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
            +      +EK  F PG+    V      ++ +
Sbjct: 133 QLYG---PEEKAAFVPGEQPPPVLSWGGRQLSL 162

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334

 Score =  153 bits (388), Expect = 1e-46
 Identities = 40/161 (24%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 7   REVVVSALQFAC-----TDDVSTNLATAERLVRA--AHGKGANIILIQELFEGYYFCQAQ 59
              +V+A+QF         D+  N+ +  R + A  A   G  +I+  E           
Sbjct: 12  EGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKW 71

Query: 60  REDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE---EANNAHYNSIAIIDADGSDL 116
             + F    P           +  KE  V    S  E   ++N   YN+  IID  G  +
Sbjct: 72  LSEEFLLDVP---GKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEII 128

Query: 117 GLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKF-AKIGVG 156
             YRK   P  P   E +Y  PGD G  V +    +K+ V 
Sbjct: 129 LKYRKLF-PWNP--IEPWY--PGDLGMPVCEGPGGSKLAVC 164

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341

 Score =  122 bits (308), Expect = 1e-34
 Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 24/172 (13%)

Query: 1   MEKG----KRREVVVSALQFAC-----TDDVSTNLATAERLVR--AAHGKGANIILIQEL 49
           M  G        V V+ + +         +V  N      ++        G ++++  E 
Sbjct: 1   MRHGDISSSNDTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEY 60

Query: 50  FEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV-----MPVSFFEEANNAHYN 104
                       +  + A                ++  V            E    A YN
Sbjct: 61  SL--QGIMYDPAEMMETAVAI-PGEETEIFSRACRKANVWGVFSLTGERHEEHPRKAPYN 117

Query: 105 SIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           ++ +ID +G  +  YRK   P  P   E +Y  PG   +     K  KI + 
Sbjct: 118 TLVLIDNNGEIVQKYRKII-PWCP--IEGWY--PGGQTYVSEGPKGMKISLI 164

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276

 Score =  111 bits (279), Expect = 7e-31
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 12/152 (7%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           ++ +Q   +   S NL  A  LVR A  +GANI+ + E F            F   A+  
Sbjct: 6   LALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFN----SPYGTTYFPDYAEKI 61

Query: 71  KDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDLGLYRKSH-----I 124
               +  K+ E+AKE  + +   S  EE     YN+ ++   DGS L  +RK H     +
Sbjct: 62  -PGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDV 120

Query: 125 PDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           P    +QE    +PGD+ F  F T + K+G+G
Sbjct: 121 PGKITFQESKTLSPGDS-FSTFDTPYCKVGLG 151

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440

 Score =  100 bits (250), Expect = 1e-25
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 18/166 (10%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           M  G+     ++  Q    +D+  N   A+ ++  A  K   ++ + E F+         
Sbjct: 10  MATGRHF---IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFD----FIGLN 62

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVV-----MPVSFFEEANNAHYNSIAIIDADGSD 115
           ++         D   + K +ELA++  +      +      +A +  +N+  IID+DG  
Sbjct: 63  KNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHP-WNTHLIIDSDGVT 121

Query: 116 LGLYRKSH-----IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
              Y K H     IP      E  +   G        T   ++G+ 
Sbjct: 122 RAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLS 167

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291

 Score = 92.0 bits (229), Expect = 2e-23
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 17/159 (10%)

Query: 11  VSALQFACT-DDVSTNLATAERLVR--AAHGKGANIILIQELFEGYYFCQAQREDFFQRA 67
           V+ +Q + +  D   NL  A   +           ++++ E F   Y    Q   + +  
Sbjct: 13  VALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTD-QFRKYSEVI 71

Query: 68  KPYKDHPTILKMQELAKELGVV-----MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKS 122
            P +   ++  +  LA +  ++     +P    +   +  YN+  I + DG  +  +RK 
Sbjct: 72  NPKEPSTSVQFLSNLANKFKIILVGGTIPEL--DPKTDKIYNTSIIFNEDGKLIDKHRKV 129

Query: 123 H-----IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
           H     IP+G  + E    +PG+       TK+ K GVG
Sbjct: 130 HLFDVDIPNGISFHESETLSPGEK-STTIDTKYGKFGVG 167

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281

 Score = 91.6 bits (228), Expect = 3e-23
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 10/149 (6%)

Query: 11  VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKP 69
           V   Q      D S N     +          +++++ E++   Y      E   ++A  
Sbjct: 23  VQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDL----EHLNEKADN 78

Query: 70  YKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
                +   ++ LA++  V +   S     NN  +N+   ++  G  +  Y K H+    
Sbjct: 79  -NLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVP-- 135

Query: 129 GYQEKFYFNPGDTGFKVFQT-KFAKIGVG 156
             +E  +   G+   + FQ      +   
Sbjct: 136 MLREHEFLTAGEYVAEPFQLSDGTYVTQL 164

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266

 Score = 80.0 bits (198), Expect = 5e-19
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 14/147 (9%)

Query: 11  VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAK 68
           +S +Q +    D + N      L+    G  ++++++ E F  G+        +   +A+
Sbjct: 6   ISLVQGSTRWHDPAGNRDYYGALLEPLAG-QSDLVILPETFTSGF------SNEAIDKAE 58

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
              D PT+  ++  A  LG  +  S      +  +N +     DG  L  Y K H+    
Sbjct: 59  D-MDGPTVAWIRTQAARLGAAITGSVQLRTEHGVFNRLLWATPDG-ALQYYDKRHLFR-- 114

Query: 129 GYQEKFYFNPGDTGFKVFQTKFAKIGV 155
              E   +  G       + K  +I  
Sbjct: 115 FGNEHLRYAAGRE-RLCVEWKGWRINP 140

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590

 Score = 55.1 bits (133), Expect = 8e-10
 Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 28/153 (18%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ--AQREDFFQRAKPYKDHPTILK 78
           D++ N     R  R +  +GA+++   E+    Y  +  A R  F + ++          
Sbjct: 18  DIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTA-------- 69

Query: 79  MQELAKEL------------GVVMPVSFFEEANNAH----YNSIAIIDADGSDLGLYRKS 122
           ++ELA  L            G +      +           N+ A++   G     + K 
Sbjct: 70  LRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKH 128

Query: 123 HIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
           H+P+   + E  YF PGDT   + +     I +
Sbjct: 129 HLPNYGVFDEFRYFVPGDT-MPIVRLHGVDIAL 160

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 35/157 (22%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ--AQREDFFQRAKPYKDHPTILK 78
           D   N+      +  A      I+ + EL    Y C+     +   + A  Y        
Sbjct: 19  DWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEY-------- 70

Query: 79  MQELAKELG-----VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEK 133
             E+A         + +P+          YN + +++ +G   G   K  + +   + E 
Sbjct: 71  CFEIAASCTDITVSLGLPMRI----AGITYNCVCLVE-NGIVKGFSAKQFLANEGVHYET 125

Query: 134 FYFNPGDT---------------GFKVFQTKFAKIGV 155
            +F                    G  ++  K A+IG 
Sbjct: 126 RWFTAWPRNHTTTFLYNDVKYPFGDVLYNVKDARIGF 162

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 28/148 (18%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK-- 78
           D + N A+   + RA H  GA + +  EL    Y      ED   +        ++L   
Sbjct: 26  DPAANAASVLDMARACHDDGAALAVFPELTLSGYSI----EDVLLQ-------DSLLDAV 74

Query: 79  ---MQELAKELG-------VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
              + +L  E         V  P+       +  YN+  +I   G+ LG+  KS++P   
Sbjct: 75  EDALLDLVTESADLLPVLVVGAPLRH----RHRIYNTAVVI-HRGAVLGVVPKSYLPTYR 129

Query: 129 GYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
            + E+    PGD      +   A +  G
Sbjct: 130 EFYERRQMAPGDGERGTIRIGGADVAFG 157

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 34/149 (22%), Positives = 48/149 (32%), Gaps = 16/149 (10%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELF-EGYY---------FCQAQRE--DFFQRAK 68
           D + N+A      +AAH  GA+ ++  EL   GY          F  A            
Sbjct: 20  DFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPAFYAASDAALAELAAQL 79

Query: 69  PYKDHPTIL--KMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPD 126
                  +L           G               YN+ ++I   G   G YRK  +P+
Sbjct: 80  KPFAGLAVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIV-GGEVAGTYRKQDLPN 138

Query: 127 GPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
              + EK YF        VF+    K GV
Sbjct: 139 TEVFDEKRYFATDA-APYVFELNGVKFGV 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	100.0
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	100.0
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	100.0
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	100.0
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	100.0
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	100.0
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	100.0
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	100.0
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	100.0
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	100.0
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	100.0
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	99.98
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	99.97
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	99.97
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	99.97
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	92.58
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	90.73
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	88.38
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	88.34
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	87.67
4fva_A	256	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	87.46
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	87.15
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	86.49
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	86.01
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	85.1
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	84.13
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	80.73

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A

Probab=100.00  E-value=2.1e-35  Score=216.86  Aligned_cols=146  Identities=34%  Similarity=0.584  Sum_probs=131.0

Q ss_pred             cEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcC
Q 031422            9 VVVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG   87 (160)
Q Consensus         9 ~~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~   87 (160)
                      ||||++|+++. .|++.|++++.+++++|+++++|||||||++++||...+ ..++.+.+++..++..++.|+++|++++
T Consensus         2 ~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~-~~~~~~~a~~~~~~~~~~~l~~~a~~~~   80 (262)
T 3ivz_A            2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFET-REEVFEIAQKIPEGETTTFLMDVARDTG   80 (262)
T ss_dssp             CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSC-HHHHHHHCBCTTTSHHHHHHHHHHHHHC
T ss_pred             eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCC-HHHHHHhcCccCCCHHHHHHHHHHHHcC
Confidence            79999999994 899999999999999999999999999999999997654 2245566665445789999999999999


Q ss_pred             cEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           88 VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        88 i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +++++|++++.++++||++++++++| ++..|+|+||+    +.|..+|.+|+..+.+|+++++|+|++||||
T Consensus        81 ~~iv~G~~~~~~~~~yNs~~~i~~~G-~~~~y~K~hL~----~~E~~~f~~G~~~~~v~~~~~~~ig~~IC~D  148 (262)
T 3ivz_A           81 VYIVAGTAEKDGDVLYNSAVVVGPRG-FIGKYRKIHLF----YREKFFFEPGDLGFRVFDLGFMKVGVMICFD  148 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEETTE-EEEEEECSSCC----GGGGGTCBCCCSCSCEEECSSCEEEECCGGG
T ss_pred             cEEEEeEEEeeCCcEEEEEEEEcCCe-eEEEEeecccC----CchhceEeCCCCCceEEEECCEEEEEEEecC
Confidence            99999999988999999999999999 99999999995    3789999999833799999999999999998

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=100.00  E-value=5.4e-35  Score=216.70  Aligned_cols=148  Identities=15%  Similarity=0.193  Sum_probs=131.6

Q ss_pred             CCcccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHH
Q 031422            5 KRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA   83 (160)
Q Consensus         5 ~~~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   83 (160)
                      ++.+||||++|+++ ..|++.|++++.+++++|+++++|||||||++++||...    ++...+++. .+...+.|+++|
T Consensus        17 ~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~----~~~~~a~~~-~~~~~~~l~~la   91 (281)
T 3p8k_A           17 RGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLE----HLNEKADNN-LGQSFSFIKHLA   91 (281)
T ss_dssp             TTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGG----GHHHHSEET-THHHHHHHHHHH
T ss_pred             cCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChh----HHHHhhhcc-CcHHHHHHHHHH
Confidence            45789999999999 589999999999999999999999999999999999854    345555543 368899999999


Q ss_pred             HHcCcEEEeccc-cccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCc-eeEEe-CCeeEEEEeccC
Q 031422           84 KELGVVMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF-KVFQT-KFAKIGVGKGFY  160 (160)
Q Consensus        84 ~~~~i~i~~g~~-~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~-~v~~~-~~~rig~~ICy~  160 (160)
                      +++++++++|.+ ++.++++||++++++++|+++..|+|+||++.  |.|..+|.+|+. . .+|++ +++|+|++||||
T Consensus        92 ~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~--f~E~~~f~~G~~-~~~v~~~~~~~~ig~~IC~D  168 (281)
T 3p8k_A           92 EKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPM--LREHEFLTAGEY-VAEPFQLSDGTYVTQLICYD  168 (281)
T ss_dssp             HHHTCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCTT--TTGGGTCCCCSS-CCCCEECTTCCEEEEEEGGG
T ss_pred             hhCCeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCCC--cCccccCcCCCC-CceeEEeCCCcEEEEEEecC
Confidence            999999999975 56788999999999999999999999999863  578999999997 6 89999 999999999998

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1

Probab=100.00  E-value=7.6e-35  Score=216.75  Aligned_cols=155  Identities=22%  Similarity=0.374  Sum_probs=128.7

Q ss_pred             CCCC--CCcccEEEEEeCC-CCCCHHHHHHHHHHHHHHH--HhCCCcEEEeccccccccccccchhhHhhhcccC-CC--
Q 031422            1 MEKG--KRREVVVSALQFA-CTDDVSTNLATAERLVRAA--HGKGANIILIQELFEGYYFCQAQREDFFQRAKPY-KD--   72 (160)
Q Consensus         1 ~~~~--~~~~~~va~~Q~~-~~~~~~~n~~~~~~~i~~a--~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~-~~--   72 (160)
                      ||.+  |.+++|||++|++ ...+.+.|++++.+++++|  ++.++|||||||++++||...    ++...++.. ..  
T Consensus         1 ~~~~~~m~~~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~~~----~~~~~~~~~~~~~~   76 (291)
T 1f89_A            1 MSASKILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTD----QFRKYSEVINPKEP   76 (291)
T ss_dssp             -CCSSSBSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHH----HHHHHTTBCCSSSC
T ss_pred             CCccccccccceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCChH----HHHHHhhhhccCCC
Confidence            4544  5567999999999 4789999999999999999  889999999999999998643    344455543 13  


Q ss_pred             ChHHHHHHHHHHHcCcEEEecc-ccccC--CeeeEEEEEEcCCCCEeEEeeeccCCC-----CCCcccceeecCCCCCce
Q 031422           73 HPTILKMQELAKELGVVMPVSF-FEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFK  144 (160)
Q Consensus        73 ~~~~~~l~~~a~~~~i~i~~g~-~~~~~--~~~~Ns~~~i~~~G~i~~~y~K~~l~~-----~~~~~e~~~~~~g~~~~~  144 (160)
                      +...+.|+++|+++++++++|. +++.+  +++||++++++++|+++.+|+|+||++     ...+.|..+|.+|+. +.
T Consensus        77 ~~~~~~l~~~a~~~~~~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hLf~e~~P~~~~~~E~~~f~~G~~-~~  155 (291)
T 1f89_A           77 STSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEK-ST  155 (291)
T ss_dssp             CHHHHHHHHHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCC-CE
T ss_pred             ChHHHHHHHHHHHcCcEEEeceeecccCCCCceEEEEEEECCCCcEEeEEeeeccCCCccCccccccccccccCCCC-Cc
Confidence            6899999999999999999995 56555  789999999999999999999999954     223568889999987 79


Q ss_pred             eEEeCCeeEEEEeccC
Q 031422          145 VFQTKFAKIGVGKGFY  160 (160)
Q Consensus       145 v~~~~~~rig~~ICy~  160 (160)
                      +|+++++|+|++||||
T Consensus       156 v~~~~~~~ig~~ICyD  171 (291)
T 1f89_A          156 TIDTKYGKFGVGICYD  171 (291)
T ss_dssp             EEEETTEEEEECCGGG
T ss_pred             eEecCCeeEEEEEecc
Confidence            9999999999999998

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}

Probab=100.00  E-value=1.1e-34  Score=214.47  Aligned_cols=148  Identities=30%  Similarity=0.393  Sum_probs=128.6

Q ss_pred             cccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHc
Q 031422            7 REVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL   86 (160)
Q Consensus         7 ~~~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~   86 (160)
                      +++|||++|+++..|.+.|++++.+++++|+++++|||||||++++||...+    +...+++. .+...+.|+++|+++
T Consensus         2 ~~~~va~vQ~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~----~~~~~~~~-~~~~~~~l~~~a~~~   76 (276)
T 2w1v_A            2 STFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTY----FPDYAEKI-PGESTQKLSEVAKES   76 (276)
T ss_dssp             CEEEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTT----HHHHCBCS-SSHHHHHHHHHHHHH
T ss_pred             CccEEEEEeccccCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHHH----HHHHhccC-CCHHHHHHHHHHHHc
Confidence            5699999999988899999999999999999999999999999999997543    34444443 368999999999999


Q ss_pred             CcEEEecc-ccccCCeeeEEEEEEcCCCCEeEEeeeccCC-----CCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           87 GVVMPVSF-FEEANNAHYNSIAIIDADGSDLGLYRKSHIP-----DGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        87 ~i~i~~g~-~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~-----~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      ++++++|. +++.++++||++++++++|+++.+|+|+||+     ....+.|..+|.+|+. +++|+++++|+|++||||
T Consensus        77 ~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~-~~v~~~~~~~ig~~ICyD  155 (276)
T 2w1v_A           77 SIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDS-FSTFDTPYCKVGLGICYD  155 (276)
T ss_dssp             TSEEECCCEEEEETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCC-CCEEECSSCEEEECCGGG
T ss_pred             CeEEEecceeecCCCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCC-ceeEEeCCceEEEEEEec
Confidence            99999994 5556789999999999999999999999994     2223568889999987 799999999999999998

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=100.00  E-value=4.1e-35  Score=217.54  Aligned_cols=148  Identities=18%  Similarity=0.219  Sum_probs=129.1

Q ss_pred             CCcccEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHh-hhcccCCCChHHHHHHHH
Q 031422            5 KRREVVVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFF-QRAKPYKDHPTILKMQEL   82 (160)
Q Consensus         5 ~~~~~~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~   82 (160)
                      ++.+||||++|+++. .|++.|++++.+++++|+++++|||||||++++||...+    +. +.+++. .++.++.|+++
T Consensus        17 ~~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~d----~~~~~a~~~-~~~~~~~l~~~   91 (283)
T 3hkx_A           17 RGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQ----ICAQVSAEQ-VDAARSRLRGI   91 (283)
T ss_dssp             TTEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHHH----HHHHCCHHH-HHHHHHHHHHH
T ss_pred             cCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHH----HHHHhcccc-CCHHHHHHHHH
Confidence            567799999999994 699999999999999999999999999999999997543    22 333322 24788999999


Q ss_pred             HHHcCcEEEeccccccC-CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           83 AKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        83 a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      |+++++++++|++++.+ +++||++++++++|+++..|+|+||++.   .|..+|.+|+..+++|+++++|+|++||||
T Consensus        92 a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~---~E~~~f~~G~~~~~v~~~~~~~ig~~IC~D  167 (283)
T 3hkx_A           92 ARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGP---EEKAAFVPGEQPPPVLSWGGRQLSLLVCYD  167 (283)
T ss_dssp             HHHTTSEEEECCBCSSCTTTCCBEEEEECTTSCEEEEEECSSCCHH---HHHHHSCCCCSCCCEEEETTEEEEECCGGG
T ss_pred             HHHhCCEEEEEEEEEcCCCCEEEEEEEEcCCCcEEEEEccccCCCc---CchhhccCCCCCceEEEECCEEEEEEEecC
Confidence            99999999999998865 7899999999999999999999999752   488899999874579999999999999998

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}

Probab=100.00  E-value=2.1e-34  Score=211.88  Aligned_cols=143  Identities=17%  Similarity=0.203  Sum_probs=126.5

Q ss_pred             cccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHH
Q 031422            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE   85 (160)
Q Consensus         7 ~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   85 (160)
                      .++|||++|+++ ..+.+.|++++.+++++| +.++|||||||++++||...     ....+++. .+...+.|+++|++
T Consensus         2 ~~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~~-----~~~~a~~~-~~~~~~~l~~~a~~   74 (266)
T 2e11_A            2 HDLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSNE-----AIDKAEDM-DGPTVAWIRTQAAR   74 (266)
T ss_dssp             CCEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCSG-----GGGGCEET-TSHHHHHHHHHHHH
T ss_pred             CccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCChh-----HHHhhccC-CCHHHHHHHHHHHH
Confidence            468999999999 589999999999999999 88999999999999998532     22334433 46899999999999


Q ss_pred             cCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        86 ~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +++++++|++++.++++||++++++++|+++ +|+|+||++.  +.|..+|.+|+. +.+|+++++|+|++||||
T Consensus        75 ~~~~iv~G~~~~~~~~~yNs~~~i~~~G~i~-~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~ig~~ICyD  145 (266)
T 2e11_A           75 LGAAITGSVQLRTEHGVFNRLLWATPDGALQ-YYDKRHLFRF--GNEHLRYAAGRE-RLCVEWKGWRINPQVCYD  145 (266)
T ss_dssp             HTSEEEEEEEEEETTEEEEEEEEECTTSCEE-EEECSSCCGG--GTTTTTSBCCCS-CCCEEETTEEEEEEEGGG
T ss_pred             hCCEEEEeeeEccCCcEEEEEEEECCCCCEE-EEeeeccCCC--cChhhhccCCCC-ceEEEECCEEEEEEEEec
Confidence            9999999999888889999999999999999 9999999874  358889999987 799999999999999998

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A

Probab=100.00  E-value=6.7e-34  Score=220.04  Aligned_cols=156  Identities=29%  Similarity=0.424  Sum_probs=121.8

Q ss_pred             CCcccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEecccccccccccc-chhhHhhhcccCCCChH
Q 031422            5 KRREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQA-QREDFFQRAKPYKDHPT   75 (160)
Q Consensus         5 ~~~~~~va~~Q~~~~--------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~-~~~~~~~~~~~~~~~~~   75 (160)
                      +.++||||++|+++.        .+.+.|++++.+++++|+++++|||||||++++||.... ....+.+.+++...+..
T Consensus        69 ~~~~~rVAlvQ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~  148 (405)
T 2vhh_A           69 KRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPT  148 (405)
T ss_dssp             CCCEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHH
T ss_pred             CCCCCEEEEEeccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHH
Confidence            446799999999873        357899999999999999999999999999999985321 11123345554434788


Q ss_pred             HHHHHHHHHHcCcEEEecccccc---CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCee
Q 031422           76 ILKMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAK  152 (160)
Q Consensus        76 ~~~l~~~a~~~~i~i~~g~~~~~---~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~r  152 (160)
                      ++.|+++|++++++|++|++++.   ++++||++++|+++|+++.+|+|+||++++.|.|..+|.+|+..+++|+++++|
T Consensus       149 ~~~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hL~~~g~f~E~~~f~~G~~~~~vf~~~~~r  228 (405)
T 2vhh_A          149 TKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGK  228 (405)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC----------CCCCSCCCEEEETTEE
T ss_pred             HHHHHHHHHHCCEEEEEeceecccCCCCcEEEEEEEECCCCeEEEEEecccCCCCCCcCcccceeCCCCCCeeEEECCEE
Confidence            99999999999999999999875   578999999999999999999999999877788999999998546899999999


Q ss_pred             EEEEeccC
Q 031422          153 IGVGKGFY  160 (160)
Q Consensus       153 ig~~ICy~  160 (160)
                      +|++||||
T Consensus       229 iG~~ICyD  236 (405)
T 2vhh_A          229 LAVNICYG  236 (405)
T ss_dssp             EEECCGGG
T ss_pred             EEEEEecc
Confidence            99999998

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A

Probab=100.00  E-value=3.5e-33  Score=208.76  Aligned_cols=153  Identities=25%  Similarity=0.385  Sum_probs=125.9

Q ss_pred             cccEEEEEeCCCC---CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccc---hhhHhhhcccCCCChHHHHHH
Q 031422            7 REVVVSALQFACT---DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ---REDFFQRAKPYKDHPTILKMQ   80 (160)
Q Consensus         7 ~~~~va~~Q~~~~---~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~l~   80 (160)
                      ++||||++|+++.   .+.+.|++++.+++++|+++++|||||||++++||.+.++   ..++....+....+..++.|+
T Consensus         2 ~~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (303)
T 1uf5_A            2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLF   81 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHH
T ss_pred             ccEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHH
Confidence            4689999999984   6999999999999999999999999999999999965431   111111111111367889999


Q ss_pred             HHHHHcCcEEEecccccc-CC---eeeEEEEEEcCCCCEeEEeeeccCCCCC------Cc--ccceeecCCC-CCceeEE
Q 031422           81 ELAKELGVVMPVSFFEEA-NN---AHYNSIAIIDADGSDLGLYRKSHIPDGP------GY--QEKFYFNPGD-TGFKVFQ  147 (160)
Q Consensus        81 ~~a~~~~i~i~~g~~~~~-~~---~~~Ns~~~i~~~G~i~~~y~K~~l~~~~------~~--~e~~~~~~g~-~~~~v~~  147 (160)
                      ++|+++++++++|++++. ++   ++||++++++++|+++.+|+|+||++..      .|  .|..+|.+|+ . +.+|+
T Consensus        82 ~~a~~~~~~iv~G~~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~e~~p~~~~~~~E~~~f~~G~~~-~~v~~  160 (303)
T 1uf5_A           82 EKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLG-FPVYD  160 (303)
T ss_dssp             HHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCSSC-SCEEE
T ss_pred             HHHHHhCeEEEEeeeEecCCCCCcceeeEEEEECCCCCEeeeEeeeecCCcccccccccccccchhhccCCCCC-CceEe
Confidence            999999999999998764 45   8999999999999999999999997322      23  5888999998 5 79999


Q ss_pred             eCCeeEEEEeccC
Q 031422          148 TKFAKIGVGKGFY  160 (160)
Q Consensus       148 ~~~~rig~~ICy~  160 (160)
                      ++++|+|++||||
T Consensus       161 ~~~~~ig~~ICyD  173 (303)
T 1uf5_A          161 VDAAKMGMFIAND  173 (303)
T ss_dssp             ETTEEEEECCGGG
T ss_pred             cCCceEEEEEecC
Confidence            9999999999998

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=1.3e-32  Score=222.99  Aligned_cols=148  Identities=15%  Similarity=0.153  Sum_probs=129.5

Q ss_pred             CcccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHH
Q 031422            6 RREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK   84 (160)
Q Consensus         6 ~~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~   84 (160)
                      |+++|||++|+++ .+|++.|++++.+.+++|+++++|||||||++++||.+.+..   .  .... .....+.|+++|+
T Consensus         3 M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~---~--~~~~-~~~~~~~l~~la~   76 (634)
T 3ilv_A            3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLF---L--TDWV-AETAIEYCFEIAA   76 (634)
T ss_dssp             -CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGG---G--SHHH-HHHHHHHHHHHHT
T ss_pred             CCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHHHh---h--Chhh-hHHHHHHHHHHHH
Confidence            4679999999999 489999999999999999999999999999999999877542   1  1111 1356788999999


Q ss_pred             Hc-CcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCC---------------ceeEEe
Q 031422           85 EL-GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG---------------FKVFQT  148 (160)
Q Consensus        85 ~~-~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~---------------~~v~~~  148 (160)
                      +. ++++++|++++.++++||+++++ ++|+++..|+|+||++++.|.|.++|.+|+..               ..+|++
T Consensus        77 ~~~~i~ivvG~p~~~~~~lyNsa~vi-~~G~il~~y~K~hL~~~~~f~E~r~f~pG~~~~~~~~~~~g~~~p~g~~vf~~  155 (634)
T 3ilv_A           77 SCTDITVSLGLPMRIAGITYNCVCLV-ENGIVKGFSAKQFLANEGVHYETRWFTAWPRNHTTTFLYNDVKYPFGDVLYNV  155 (634)
T ss_dssp             TCTTSEEEEEEEEEETTEEEEEEEEE-ETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTCEEEEEETTEEEEEESCCEEE
T ss_pred             hCCCCEEEEeeeEeeCCCccEEEEEE-ECCeEEEEEcCEeCCCCCCcChhhhcCCCCccccceecccCcccccCCeEEEE
Confidence            86 99999999998889999999999 79999999999999999999999999999862               158999


Q ss_pred             CCeeEEEEeccC
Q 031422          149 KFAKIGVGKGFY  160 (160)
Q Consensus       149 ~~~rig~~ICy~  160 (160)
                      +++|+|+.||||
T Consensus       156 ~g~~iG~~IC~D  167 (634)
T 3ilv_A          156 KDARIGFEICED  167 (634)
T ss_dssp             TTEEEEECCTTC
T ss_pred             CCEEEEEEEecc
Confidence            999999999998

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=100.00  E-value=1.2e-32  Score=221.77  Aligned_cols=148  Identities=20%  Similarity=0.268  Sum_probs=128.5

Q ss_pred             CCcccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHH
Q 031422            5 KRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA   83 (160)
Q Consensus         5 ~~~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   83 (160)
                      |.++||||++|+++ .+|++.|++++.+++++|+++++|||||||++++||++.+...    ....  .....+.|+++|
T Consensus         1 M~~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~dl~~----~~~~--~~~~~~~l~~la   74 (590)
T 3n05_A            1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL----RSSF--VEASRTALRELA   74 (590)
T ss_dssp             -CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCCGGGGG----CHHH--HHHHHHHHHHHH
T ss_pred             CCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCChHHHhh----CHHH--HHHHHHHHHHHH
Confidence            55689999999999 5899999999999999999999999999999999999765421    1111  125667889999


Q ss_pred             HHc--C----cEEEeccccccC----------CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEE
Q 031422           84 KEL--G----VVMPVSFFEEAN----------NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQ  147 (160)
Q Consensus        84 ~~~--~----i~i~~g~~~~~~----------~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~  147 (160)
                      +++  +    +++++|++++.+          +++||++++++ +|+++..|+|+||++++.|.|.++|.+|+. +.+|+
T Consensus        75 ~~~~~~~~~~i~ivvG~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~~L~~~~~f~E~r~f~~G~~-~~v~~  152 (590)
T 3n05_A           75 ARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYGVFDEFRYFVPGDT-MPIVR  152 (590)
T ss_dssp             HHHHHTTCTTSCEEEEEEEECSSCBTTTTBCTTCEEEEEEEEE-TTEEEEEEECCCCCSSSSCCHHHHCCCCCE-EEEEE
T ss_pred             HhhhhccCCceEEEEeeEEEEcCcccccccccCCeeEEEEEEe-CCEEEEEEeCccCCCCCccCccccccCCCc-ceEEE
Confidence            888  6    999999987743          37999999997 899999999999999999999999999997 79999


Q ss_pred             eCCeeEEEEeccC
Q 031422          148 TKFAKIGVGKGFY  160 (160)
Q Consensus       148 ~~~~rig~~ICy~  160 (160)
                      ++++|+|+.||||
T Consensus       153 ~~g~~iG~~IC~D  165 (590)
T 3n05_A          153 LHGVDIALAICED  165 (590)
T ss_dssp             ETTEEEEEEEGGG
T ss_pred             ECCEEEEEEeehh
Confidence            9999999999998

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=100.00  E-value=1.6e-32  Score=219.61  Aligned_cols=147  Identities=23%  Similarity=0.288  Sum_probs=120.7

Q ss_pred             cccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccch--hhHhhhcccCCCChHHHHHHHH-
Q 031422            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR--EDFFQRAKPYKDHPTILKMQEL-   82 (160)
Q Consensus         7 ~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~-   82 (160)
                      ++||||++|+++ .+|++.|++++.+++++|+++|||||||||++++||++.+..  ..+.+.+.     ..+..+.+. 
T Consensus         5 MkmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~~~Dl~~~~~~~~~~~-----~~l~~la~~~   79 (565)
T 4f4h_A            5 MKTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPAFYAASD-----AALAELAAQL   79 (565)
T ss_dssp             -CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGCHHHHHHHH-----HHHHHHHHHH
T ss_pred             cceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCChHHhhhCHHHHHHHH-----HHHHHHHHHh
Confidence            359999999998 589999999999999999999999999999999999988652  12222221     222333222 


Q ss_pred             HHHcCcEEEeccccccC----------------CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeE
Q 031422           83 AKELGVVMPVSFFEEAN----------------NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVF  146 (160)
Q Consensus        83 a~~~~i~i~~g~~~~~~----------------~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~  146 (160)
                      ++..++++++|++.+.+                +++||+++++. +|+++..|+|+|||+++.|.|.++|.+|+. +.+|
T Consensus        80 ~~~~~i~ivvG~p~~~~~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~hLp~~~~f~E~r~f~~G~~-~~v~  157 (565)
T 4f4h_A           80 KPFAGLAVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIV-GGEVAGTYRKQDLPNTEVFDEKRYFATDAA-PYVF  157 (565)
T ss_dssp             TTSTTCEEEEEEEEECC-----CCCCCCTTSCCCSEEEEEEEEE-TTEEEEEEECCSCCCSTTCCGGGTCCCCCC-CCEE
T ss_pred             hhcCCcEEEEeeeeeecccccccccceecccCCCceEEEEEEEE-CCEEEEEEeeeecCCCcccceeccccCCCc-ceeE
Confidence            23358999999886532                35999999996 699999999999999999999999999998 7999


Q ss_pred             EeCCeeEEEEeccC
Q 031422          147 QTKFAKIGVGKGFY  160 (160)
Q Consensus       147 ~~~~~rig~~ICy~  160 (160)
                      +++++|+|+.||||
T Consensus       158 ~~~g~~iGv~IC~D  171 (565)
T 4f4h_A          158 ELNGVKFGVVICED  171 (565)
T ss_dssp             EETTEEEEECCGGG
T ss_pred             EecCcEEEEEEeeh
Confidence            99999999999998

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*

Probab=99.98  E-value=3.1e-32  Score=221.86  Aligned_cols=148  Identities=22%  Similarity=0.229  Sum_probs=129.5

Q ss_pred             cccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchh--hHhhhcccCCCChHHHHHHHHH
Q 031422            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRE--DFFQRAKPYKDHPTILKMQELA   83 (160)
Q Consensus         7 ~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~a   83 (160)
                      +.||||++|+++ .+|++.|++++.+.+++|+++|+|||||||++++||.+.+...  ++.+.+     ...++.|.+++
T Consensus        11 g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~-----~~~l~~l~~~a   85 (680)
T 3sdb_A           11 GFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAV-----EDALLDLVTES   85 (680)
T ss_dssp             TEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHHH-----HHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHhhCHHHHHhh-----HHHHHHHHHHh
Confidence            469999999999 4999999999999999999999999999999999999876421  222222     36788999999


Q ss_pred             HHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCc---------------eeE--
Q 031422           84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF---------------KVF--  146 (160)
Q Consensus        84 ~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~---------------~v~--  146 (160)
                      +++++++++|++++.++++||++++++ +|++++.|+|+||++++.|.|.++|.+|+...               .+|  
T Consensus        86 ~~~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hL~~~~~f~E~r~F~~G~~~~~~i~~~g~~vpfg~~~vf~~  164 (680)
T 3sdb_A           86 ADLLPVLVVGAPLRHRHRIYNTAVVIH-RGAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVAFGTDLLFAA  164 (680)
T ss_dssp             TTCSSEEEEEEEEEETTEEEEEEEEEE-TTEEEEEEECSCCCEETTEEGGGTEECCTTCCSEEEETTEEEEBSSCEEEEE
T ss_pred             hcCCcEEEEeceEEeCCCceEEEEEEe-CCCEEEEEeeecCCCCCccChhhhcCCCCCCCceeeecCcccccCCceeEee
Confidence            999999999999988899999999998 89999999999999999999999999998621               146  


Q ss_pred             -EeCCeeEEEEeccC
Q 031422          147 -QTKFAKIGVGKGFY  160 (160)
Q Consensus       147 -~~~~~rig~~ICy~  160 (160)
                       +++++|+|+.||||
T Consensus       165 ~~~~g~riGv~IC~D  179 (680)
T 3sdb_A          165 SDLPGFVLHVEIAED  179 (680)
T ss_dssp             TTCTTCEEEEEEGGG
T ss_pred             eccCCeEEEEEEecc
Confidence             68999999999998

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A

Probab=99.97  E-value=8.5e-31  Score=198.81  Aligned_cols=145  Identities=17%  Similarity=0.149  Sum_probs=122.2

Q ss_pred             cccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh--CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHH
Q 031422            7 REVVVSALQFAC-----TDDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM   79 (160)
Q Consensus         7 ~~~~va~~Q~~~-----~~~~~~n~~~~~~~i~~a~~--~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l   79 (160)
                      .++|||++|+++     ..+++.|++++.+++++|++  .++|||||||++++||...  ..++.+.+++. .+..++.|
T Consensus        11 ~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~--~~~~~~~a~~~-~~~~~~~l   87 (341)
T 2uxy_A           11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYD--PAEMMETAVAI-PGEETEIF   87 (341)
T ss_dssp             TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCS--HHHHHHHCBCS-SSHHHHHH
T ss_pred             CccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCCC--HHHHHHHhccC-CCHHHHHH
Confidence            679999999985     25789999999999999987  7999999999999997532  22345556654 36899999


Q ss_pred             HHHHHHcCcEEEeccc-cccC----CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEe-CCeeE
Q 031422           80 QELAKELGVVMPVSFF-EEAN----NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQT-KFAKI  153 (160)
Q Consensus        80 ~~~a~~~~i~i~~g~~-~~~~----~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~-~~~ri  153 (160)
                      +++|+++++++++|++ ++.+    +++||++++++++|+++.+|+|+||+.     |..+|.+|+. ..+|++ .|.|+
T Consensus        88 ~~~a~~~~i~iv~G~~ge~~~~~~~~~~yNsa~vi~p~G~i~~~Y~K~hlf~-----e~~~f~pG~~-~~v~~~~~G~ri  161 (341)
T 2uxy_A           88 SRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWC-----PIEGWYPGGQ-TYVSEGPKGMKI  161 (341)
T ss_dssp             HHHHHHHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCCT-----TTCCCBCCCC-CCCEECGGGCEE
T ss_pred             HHHHHHhCcEEEEEeeeeEcCCCCCCceEEEEEEECCCCcEEEEEEeeccCC-----CccceeCCCC-ceEEECCCCCEE
Confidence            9999999999999988 7642    359999999999999999999999854     4567899987 689999 56799


Q ss_pred             EEEeccC
Q 031422          154 GVGKGFY  160 (160)
Q Consensus       154 g~~ICy~  160 (160)
                      |++||||
T Consensus       162 G~~ICyD  168 (341)
T 2uxy_A          162 SLIIXDD  168 (341)
T ss_dssp             EEEEGGG
T ss_pred             EEEEccC
Confidence            9999998

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=99.97  E-value=2.9e-31  Score=207.52  Aligned_cols=149  Identities=19%  Similarity=0.287  Sum_probs=124.6

Q ss_pred             cccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHc
Q 031422            7 REVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL   86 (160)
Q Consensus         7 ~~~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~   86 (160)
                      +++|||++|+++..|.+.|++++.+++++|+++|+|||||||++++++....   +....+++. .+...+.|+++|+++
T Consensus        13 ~~~kVa~vQ~~~~~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~~~---~~~~~a~~~-~~~~~~~l~~~A~~~   88 (440)
T 1ems_A           13 GRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKN---EQIDLAMAT-DCEYMEKYRELARKH   88 (440)
T ss_dssp             SEEEEEEECBCCCSCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHH---HHHHHHHHH-HHHHHHHHHHHHHHT
T ss_pred             CCceEEEEecCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcchh---HHHHhhccC-CCHHHHHHHHHHHHc
Confidence            4799999999998899999999999999999999999999999998775321   122223222 257889999999999


Q ss_pred             CcEEEecccc---c-cCCeeeEEEEEEcCCCCEeEEeeeccCCC-----CCCcccceeecCCCCCcee-EEeCCeeEEEE
Q 031422           87 GVVMPVSFFE---E-ANNAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKV-FQTKFAKIGVG  156 (160)
Q Consensus        87 ~i~i~~g~~~---~-~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~-----~~~~~e~~~~~~g~~~~~v-~~~~~~rig~~  156 (160)
                      ++++++|++.   + .++++||++++++++|+++.+|+|+||++     ...|.|..+|.+|+. ..+ |+++++|+|++
T Consensus        89 ~i~iv~G~~~~~e~~~~~~~yNs~~~i~~~G~i~~~yrK~hL~~~~~P~~~~~~E~~~f~~G~~-~~~~~~~~~~~iG~~  167 (440)
T 1ems_A           89 NIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTE-MIPPVDTPIGRLGLS  167 (440)
T ss_dssp             TCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCS-CCCCEEETTEEECCC
T ss_pred             CeEEEeccccccccCCCCcEEEEEEEECCCCcEEEEEeeeeecCccCCCCCcccccccccCCCC-CceeEECCCeeEEEE
Confidence            9999999654   4 35789999999999999999999999963     223568889999997 566 99999999999


Q ss_pred             eccC
Q 031422          157 KGFY  160 (160)
Q Consensus       157 ICy~  160 (160)
                      ||||
T Consensus       168 ICyD  171 (440)
T 1ems_A          168 ICYD  171 (440)
T ss_dssp             CGGG
T ss_pred             Eecc
Confidence            9998

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A

Probab=99.97  E-value=7.5e-31  Score=198.65  Aligned_cols=146  Identities=22%  Similarity=0.188  Sum_probs=120.3

Q ss_pred             cccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh--CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHH
Q 031422            7 REVVVSALQFAC-----TDDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM   79 (160)
Q Consensus         7 ~~~~va~~Q~~~-----~~~~~~n~~~~~~~i~~a~~--~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l   79 (160)
                      +++|||++|+++     ..+.+.|++++.+++++|++  .++|||||||++++||....  .++.+.+++. .+..++.|
T Consensus        12 ~~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~~--~~~~~~a~~~-~~~~~~~l   88 (334)
T 2dyu_A           12 EGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAK--WLSEEFLLDV-PGKETELY   88 (334)
T ss_dssp             -CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTTT--TTSGGGCBCS-SSHHHHHH
T ss_pred             CccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCCh--hHHHHhhccC-CCHHHHHH
Confidence            469999999985     25789999999999999987  79999999999999976432  1233444443 36889999


Q ss_pred             HHHHHHcCcEEEeccccccC-Ce--eeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEe-CCeeEEE
Q 031422           80 QELAKELGVVMPVSFFEEAN-NA--HYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQT-KFAKIGV  155 (160)
Q Consensus        80 ~~~a~~~~i~i~~g~~~~~~-~~--~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~-~~~rig~  155 (160)
                      +++|+++++++++|++++.+ ++  +||++++++++|+++..|+|+||+.     |..+|.+|+...++|++ .|.|+|+
T Consensus        89 ~~~a~~~~i~iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hlf~-----e~~~f~~G~~~~~v~~~~~g~~iG~  163 (334)
T 2dyu_A           89 AKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPWN-----PIEPWYPGDLGMPVCEGPGGSKLAV  163 (334)
T ss_dssp             HHHHHHHTCEEEEEEEECCSSTTSCCEEEEEEECTTSCEEEEEECSSCCT-----TTCCCCCCCSCCCCEECGGGCEEEE
T ss_pred             HHHHHHhCeEEEEeeEEECCCCCceeEEEEEEECCCCCEEEEEeeccCCC-----CcccCcCCCCCceeEECCCCCEEEE
Confidence            99999999999999998753 44  9999999999999999999999864     44578999874459998 4679999


Q ss_pred             EeccC
Q 031422          156 GKGFY  160 (160)
Q Consensus       156 ~ICy~  160 (160)
                      +||||
T Consensus       164 ~ICyD  168 (334)
T 2dyu_A          164 CICHD  168 (334)
T ss_dssp             EEGGG
T ss_pred             EEECC
Confidence            99998

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=92.58  E-value=0.52  Score=34.13  Aligned_cols=70  Identities=20%  Similarity=0.269  Sum_probs=43.8

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCCee-eEEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNAH-YNSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~~~-~Ns~~~i  109 (160)
                      ..+..+.+|+|+++.|=.+..++.                 ......++..|.+++++++...... .++.. +=.++++
T Consensus       173 ~~r~l~~~Ga~li~~ps~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii  235 (283)
T 3hkx_A          173 MVRAAAARGAQLVLVPTALAGDET-----------------SVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVV  235 (283)
T ss_dssp             HHHHHHHTTCSEEEEECCCBSCCT-----------------HHHHTHHHHHHHHHTCEEEEECBEEEETTEEEECCCEEE
T ss_pred             HHHHHHHCCCCEEEECCCCCCccc-----------------HHHHHHHHHHHHHhCCEEEEEccccCCCCeEEeeEEEEE
Confidence            445556789999999976432210                 1223346677889999998743322 23322 3347889


Q ss_pred             cCCCCEeEE
Q 031422          110 DADGSDLGL  118 (160)
Q Consensus       110 ~~~G~i~~~  118 (160)
                      +|+|+++..
T Consensus       236 ~p~G~vl~~  244 (283)
T 3hkx_A          236 GPAGQPLGE  244 (283)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCCEEEe
Confidence            999998643

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=90.73  E-value=1  Score=32.52  Aligned_cols=69  Identities=13%  Similarity=0.045  Sum_probs=43.1

Q ss_pred             HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-ccC-CeeeEEEEEEc
Q 031422           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EAN-NAHYNSIAIID  110 (160)
Q Consensus        33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~-~~~~Ns~~~i~  110 (160)
                      .+..+.+|+|+|+.|-.|....         .        ......++..|.+++++++..... ..+ ..++=.+++++
T Consensus       175 ~r~~~~~Gadli~~psa~~~~~---------~--------~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~  237 (281)
T 3p8k_A          175 LRYPARSGAKIAFYVAQWPMSR---------L--------QHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVIN  237 (281)
T ss_dssp             HHHHHHTTCCEEEEEECCBGGG---------H--------HHHHHHHHHHHHHHTSEEEEEECEEECSSCEEECCCEEEC
T ss_pred             HHHHHHCCCCEEEECCCCCCcc---------H--------HHHHHHHHHHHHHcCCEEEEEccCcCCCCcEEeeeEEEEC
Confidence            3445568999999996443110         0        122334667788999999863332 223 33445578899


Q ss_pred             CCCCEeEE
Q 031422          111 ADGSDLGL  118 (160)
Q Consensus       111 ~~G~i~~~  118 (160)
                      |+|+++..
T Consensus       238 p~G~vl~~  245 (281)
T 3p8k_A          238 PNGDLVGE  245 (281)
T ss_dssp             TTSCEEEE
T ss_pred             CCCCEEEe
Confidence            99998754

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A

Probab=88.38  E-value=2.3  Score=31.56  Aligned_cols=70  Identities=19%  Similarity=0.069  Sum_probs=43.8

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c-CCeeeEEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A-NNAHYNSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~-~~~~~Ns~~~i  109 (160)
                      ..+.++.+|+|+|+.|-.+....                 .......++..|.+++++++...... + +..++=.++++
T Consensus       174 ~~r~~~~~Gadlil~psaw~~~~-----------------~~~~~~~~~arA~En~~~vv~an~~G~~~~~~~~G~S~Ii  236 (334)
T 2dyu_A          174 LAREAAYKGCNVYIRISGYSTQV-----------------NDQWILTNRSNAWHNLMYTVSVNLAGYDNVFYYFGEGQIC  236 (334)
T ss_dssp             HHHHHHHTTCSEEEEEESSCTTS-----------------HHHHHHHHHHHHHHHTCEEEEEECSBSSSSCCCCCEEEEE
T ss_pred             HHHHHHHcCCCEEEEeCCCCCCc-----------------HHHHHHHHHHHHHhCCCEEEEECCCcCCCCeeeeeEEEEE
Confidence            44555567999999996542110                 01233456777889999987743322 2 22344567888


Q ss_pred             cCCCCEeEE
Q 031422          110 DADGSDLGL  118 (160)
Q Consensus       110 ~~~G~i~~~  118 (160)
                      +|+|+++..
T Consensus       237 dp~G~vla~  245 (334)
T 2dyu_A          237 NFDGTTLVQ  245 (334)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCCEeee
Confidence            999998753

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A

Probab=88.34  E-value=2  Score=32.01  Aligned_cols=70  Identities=20%  Similarity=0.208  Sum_probs=43.9

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cC-CeeeEEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NAHYNSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~-~~~~Ns~~~i  109 (160)
                      ..+.++.+|+|+|+.|-.|..  ..               .......++..|.+++++++...... ++ ..++=.++++
T Consensus       174 ~~r~l~~~Gadlll~psa~~~--~~---------------~~~~~~l~~arA~En~~~vv~an~~G~~~~~~~~G~S~Ii  236 (341)
T 2uxy_A          174 IWRDCAMKGAELIVRCQGYMY--PA---------------KDQQVMMAKAMAWANNCYVAVANAAGFDGVYSYFGHSAII  236 (341)
T ss_dssp             HHHHHHHTTCSEEEEEECCBT--TC---------------HHHHHHHHHHHHHHHTCEEEEEECEEECSSCEEECCCEEE
T ss_pred             HHHHHHHcCCCEEEEcCCCCC--Cc---------------HHHHHHHHHHHHHhCCcEEEEECCCCCCCCceeeeEEEEE
Confidence            445556689999999965421  10               01334456777889999988743322 22 2344467888


Q ss_pred             cCCCCEeEE
Q 031422          110 DADGSDLGL  118 (160)
Q Consensus       110 ~~~G~i~~~  118 (160)
                      +++|+++..
T Consensus       237 dp~G~vla~  245 (341)
T 2uxy_A          237 GFDGRTLGE  245 (341)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCCEEEE
Confidence            999998753

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=87.67  E-value=4.1  Score=29.58  Aligned_cols=73  Identities=10%  Similarity=0.083  Sum_probs=47.6

Q ss_pred             cEEEEEeCCCC------CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHH
Q 031422            9 VVVSALQFACT------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQEL   82 (160)
Q Consensus         9 ~~va~~Q~~~~------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   82 (160)
                      +++..+.....      ...+...+.+.+.++.|+.-|++.|++|-.     +.......+...      ...++.+.+.
T Consensus        90 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~-----~~~~~~~~~~~~------~~~l~~l~~~  158 (305)
T 3obe_A           90 LRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQPSL-----PRIENEDDAKVV------SEIFNRAGEI  158 (305)
T ss_dssp             CEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEECCC-----CCCSSHHHHHHH------HHHHHHHHHH
T ss_pred             CeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeCCC-----CCCCCHHHHHHH------HHHHHHHHHH
Confidence            56666655431      234667788999999999999999999721     111112223222      1566778888


Q ss_pred             HHHcCcEEEe
Q 031422           83 AKELGVVMPV   92 (160)
Q Consensus        83 a~~~~i~i~~   92 (160)
                      |+++|+.+.+
T Consensus       159 a~~~Gv~l~l  168 (305)
T 3obe_A          159 TKKAGILWGY  168 (305)
T ss_dssp             HHTTTCEEEE
T ss_pred             HHHcCCEEEE
Confidence            8999998876

>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}

Probab=87.46  E-value=0.46  Score=32.89  Aligned_cols=42  Identities=17%  Similarity=0.362  Sum_probs=25.7

Q ss_pred             CcccEEEEEeCCCC----CCHHHHHHHHHHHHHHHHhCCCcEEEecccc
Q 031422            6 RREVVVSALQFACT----DDVSTNLATAERLVRAAHGKGANIILIQELF   50 (160)
Q Consensus         6 ~~~~~va~~Q~~~~----~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~   50 (160)
                      .+.+++-++..|+.    .+.....+.+.+.|+   +.++|+|+|.|..
T Consensus         9 ~~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~---~~~pDIi~LQEv~   54 (256)
T 4fva_A            9 LKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVK---NVNPDILFLQEVV   54 (256)
T ss_dssp             CTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHH---HHCCSEEEEEEEC
T ss_pred             CCCCEEEEEEEecCCCCCcCHHHHHHHHHHHHH---HcCCCEEEEEecC
Confidence            34455666666662    234444445555554   4589999999963

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1

Probab=87.15  E-value=1.7  Score=31.29  Aligned_cols=70  Identities=14%  Similarity=0.062  Sum_probs=42.4

Q ss_pred             HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc---cCCeeeEEEEEE
Q 031422           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE---ANNAHYNSIAII  109 (160)
Q Consensus        33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~---~~~~~~Ns~~~i  109 (160)
                      .+..+.+|+|+++.|-.+....         .   .    ......++..|.+++++++......   .+..++-.++++
T Consensus       178 ~r~l~~~Ga~ll~~ps~~~~~~---------~---~----~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii  241 (291)
T 1f89_A          178 AMLSARKGAFAMIYPSAFNTVT---------G---P----LHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVV  241 (291)
T ss_dssp             HHHHHHTTEEEEEEECCCBTTH---------H---H----HHHHHHHHHHHHHHTSEEEEECCCCCTTSSSCBCCCCEEE
T ss_pred             HHHHHhhCCCEEEECCcCCCCC---------c---H----HHHHHHHHHHHHHcCCEEEEecCccCCCCCCeeeeEEEEE
Confidence            4445567999999995322100         0   0    1233456677889999987743322   223345567889


Q ss_pred             cCCCCEeEE
Q 031422          110 DADGSDLGL  118 (160)
Q Consensus       110 ~~~G~i~~~  118 (160)
                      +|+|+++..
T Consensus       242 ~p~G~vl~~  250 (291)
T 1f89_A          242 DPRGKIVAE  250 (291)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCCEEEe
Confidence            999998753

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A

Probab=86.49  E-value=3  Score=29.58  Aligned_cols=67  Identities=16%  Similarity=-0.033  Sum_probs=42.6

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCCe-eeEEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNA-HYNSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~~-~~Ns~~~i  109 (160)
                      ..+..+.+|+|+++.|=.+...                    .....++..|.+++++++...... +++. .+=.++++
T Consensus       154 ~~r~~~~~ga~li~~ps~~~~~--------------------~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii  213 (262)
T 3ivz_A          154 SARTLALKGADVIAHPANLVMP--------------------YAPRAMPIRALENKVYTVTADRVGEERGLKFIGKSLIA  213 (262)
T ss_dssp             HHHHHHHTTCSEEEEEECCCSS--------------------CHHHHHHHHHHHHTCEEEEEECCSEETTEECCCCCEEE
T ss_pred             HHHHHHHCCCCEEEEcCCCCch--------------------HHHHHHHHHHHhcCcEEEEECCCCcCCCceEeeeEEEE
Confidence            3445567899999999764321                    122346677889999987743322 2222 23447888


Q ss_pred             cCCCCEeEE
Q 031422          110 DADGSDLGL  118 (160)
Q Consensus       110 ~~~G~i~~~  118 (160)
                      +|+|+++..
T Consensus       214 ~p~G~il~~  222 (262)
T 3ivz_A          214 SPKAEVLSM  222 (262)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCCEeec
Confidence            999988643

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=86.01  E-value=2.1  Score=34.36  Aligned_cols=72  Identities=14%  Similarity=0.146  Sum_probs=46.1

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccc-cccCC-eeeEEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANN-AHYNSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~-~~~~~-~~~Ns~~~i  109 (160)
                      ..+.++.+|+++++.|=.+.....    .           .......++..|.+++++++.... -.+++ .++-.++++
T Consensus       177 ~~r~la~~GA~ii~~psAs~~~~g----k-----------~~~r~~ll~arA~e~~~~vvy~N~vG~~~~~~f~G~S~ii  241 (565)
T 4f4h_A          177 AAQLAKAAGAQVLIVPNGSPYHMN----K-----------DAVRIDILRARIRETGLPMVYVNLVGGQDELVFDGGSFVL  241 (565)
T ss_dssp             HHHHHHHTTCSEEEEEECCBCCTT----H-----------HHHHHHHHHHHHHHHCCCEEEEECEEEETTEEEEBCCEEE
T ss_pred             hhHHHHhCCCeeeecccccccccC----c-----------HHHHHHHHHHHHHHhCCcEEEeeeecCCCCeEEECCccee
Confidence            344556789999999975432110    0           012334578889999999877433 22333 455778999


Q ss_pred             cCCCCEeEE
Q 031422          110 DADGSDLGL  118 (160)
Q Consensus       110 ~~~G~i~~~  118 (160)
                      +++|+++..
T Consensus       242 dp~G~vla~  250 (565)
T 4f4h_A          242 DGAGELVAK  250 (565)
T ss_dssp             CTTSCEEEE
T ss_pred             cCCCcEEEE
Confidence            999998643

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}

Probab=85.10  E-value=2  Score=30.77  Aligned_cols=69  Identities=12%  Similarity=0.053  Sum_probs=41.9

Q ss_pred             HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c--CCeeeEEEEEE
Q 031422           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A--NNAHYNSIAII  109 (160)
Q Consensus        33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~--~~~~~Ns~~~i  109 (160)
                      .+..+.+|+|+++.|-.+.....    .            ......++..|.+++++++...... +  +..++=.++++
T Consensus       162 ~r~~~~~ga~ll~~ps~~~~~~~----~------------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii  225 (276)
T 2w1v_A          162 AQIYAQRGCQLLVYPGAFNLTTG----P------------AHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVV  225 (276)
T ss_dssp             HHHHHHTTEEEEEEECCCCTTHH----H------------HHHHHHHHHHHHHHTCEEEEECCCCCTTSSSCCCCCCEEE
T ss_pred             HHHHHHcCCCEEEECCcCCCcCC----H------------HHHHHHHHHHHHHcCcEEEEecccccCCCCceeeeEeEEE
Confidence            44555679999999964321000    0            1223346677889999988743322 1  22344567888


Q ss_pred             cCCCCEeE
Q 031422          110 DADGSDLG  117 (160)
Q Consensus       110 ~~~G~i~~  117 (160)
                      +|+|+++.
T Consensus       226 ~p~G~v~~  233 (276)
T 2w1v_A          226 DPWGQVLT  233 (276)
T ss_dssp             CTTSCEEE
T ss_pred             CCCCCEeE
Confidence            99999875

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}

Probab=84.13  E-value=4.5  Score=28.67  Aligned_cols=62  Identities=13%  Similarity=-0.088  Sum_probs=39.2

Q ss_pred             CCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-ccCC--eeeEEEEEEcCCCCEe
Q 031422           40 GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN--AHYNSIAIIDADGSDL  116 (160)
Q Consensus        40 ~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~--~~~Ns~~~i~~~G~i~  116 (160)
                      |+|+++.|-.|....     .            ......++..|.+++++++..... .+++  ...=.+++++|+|+++
T Consensus       165 ga~~i~~~s~w~~~~-----~------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~v~  227 (266)
T 2e11_A          165 DFDLQLFVANWPSAR-----A------------YAWKTLLRARAIENLCFVAAVNRVGVDGNQLHYAGDSAVIDFLGQPQ  227 (266)
T ss_dssp             SCSEEEEEECCCGGG-----H------------HHHHHHHHHHHHHTTSEEEEEECEEECTTSCEEEEEEEEECTTSCEE
T ss_pred             CCcEEEEeCCCCCCc-----h------------HHHHHHHHHHHHhcCcEEEEEcCCcCCCCCceEeeeEEEECCCCcee
Confidence            899999887643210     0            123344667789999999874322 2222  3445678999999987


Q ss_pred             EE
Q 031422          117 GL  118 (160)
Q Consensus       117 ~~  118 (160)
                      ..
T Consensus       228 ~~  229 (266)
T 2e11_A          228 VE  229 (266)
T ss_dssp             EE
T ss_pred             ee
Confidence            53

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=80.73  E-value=11  Score=30.32  Aligned_cols=72  Identities=21%  Similarity=0.260  Sum_probs=45.3

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-ccCCeee-EEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANNAHY-NSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~~~~-Ns~~~i  109 (160)
                      ..+.++.+|+|+++.|=.+.  +...          .   .......++..|.+++++++..... ..++..| =.++++
T Consensus       172 ~~~~la~~Ga~ii~~psa~p--~~~g----------k---~~~~~~l~~~rA~e~~~~vv~an~~G~~~~~~f~G~S~ii  236 (590)
T 3n05_A          172 RVPAARSAGAGLLLSVNASP--YERD----------K---DDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVV  236 (590)
T ss_dssp             HHHHHHHTTCSEEEEEECCB--CCCC----------S---SCHHHHHHHHHHHHHTSEEEEEECEEEETTEEEEBCCEEE
T ss_pred             HHHHHHHcCCCEEEEecCCc--cccC----------c---HHHHHHHHHHHHHHhCCEEEEEecccCCCCeEEeCcEEEE
Confidence            34455668999999986532  1100          0   1244566788899999999874332 2334444 457888


Q ss_pred             cCCCCEeEE
Q 031422          110 DADGSDLGL  118 (160)
Q Consensus       110 ~~~G~i~~~  118 (160)
                      +++|+++..
T Consensus       237 dp~G~vla~  245 (590)
T 3n05_A          237 DRDGEVVAR  245 (590)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCcEEEE
Confidence            999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1uf5a_	303	d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol	2e-22
d1j31a_	262	d.160.1.2 (A:) Hypothetical protein PH0642 {Archae	3e-22
d1emsa2	271	d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te	4e-16
d1f89a_	281	d.160.1.1 (A:) hypothetical protein yl85 {Baker's	7e-10

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 18/172 (10%)

Query: 7   REVVVSALQFACT---DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ---AQR 60
           R+++++  Q       +     +     ++  A  +GAN I+  EL    +F +      
Sbjct: 2   RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDE 61

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIIDADGSDL 116
            +     +     P +  + E A ELG+   + +     E      +N+  ++D  G  +
Sbjct: 62  AELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIV 121

Query: 117 GLYRKSHIPDGPGYQE--------KFYFNPGDTGFKVFQTKFAKIGVGKGFY 160
           G YRK H+P    Y+         K YF PGD GF V+    AK+G+     
Sbjct: 122 GKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIAND 173

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 87.4 bits (215), Expect = 3e-22
 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 7/146 (4%)

Query: 11  VSALQFACTD-DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKP 69
           V  +Q      ++  N + AE+L++ A  +GA ++++ ELF+  Y  +  RE+ F  A+ 
Sbjct: 4   VGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFE-SREEVFDVAQQ 62

Query: 70  YKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPG 129
             +  T   + ELA+ELG+ +     E++ N  YNS  ++   G  +G YRK H+     
Sbjct: 63  IPEGETTTFLMELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGY-IGKYRKIHLF---- 117

Query: 130 YQEKFYFNPGDTGFKVFQTKFAKIGV 155
           Y+EK +F PGD GFKVF   FAK+GV
Sbjct: 118 YREKVFFEPGDLGFKVFDIGFAKVGV 143

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.3 bits (173), Expect = 4e-16
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 8/159 (5%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           M  G+     ++  Q    +D+  N   A+ ++  A  K   ++ + E F+     + ++
Sbjct: 1   MATGRHF---IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQ 57

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
            D                 ++    L +              +N+  IID+DG     Y 
Sbjct: 58  IDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYN 117

Query: 121 KSHIPDGPGYQEKFYFN-----PGDTGFKVFQTKFAKIG 154
           K H+ D     +           G        T   ++G
Sbjct: 118 KLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLG 156

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 7e-10
 Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 7   REVVVSALQFACT-DDVSTNLATAERLVR--AAHGKGANIILIQELFEGYYFCQAQREDF 63
           +++ V+ +Q + +  D   NL  A   +           ++++ E F   Y    Q   +
Sbjct: 8   QKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTD-QFRKY 66

Query: 64  FQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAH 102
            +   P +   ++  +  LA +  +++      E +   
Sbjct: 67  SEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKT 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1j31a_	262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	100.0
d1f89a_	281	hypothetical protein yl85 {Baker's yeast (Saccharo	100.0
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	100.0
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	99.97
d1j31a_	262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	89.39
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	89.37
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	85.96
d1f89a_	281	hypothetical protein yl85 {Baker's yeast (Saccharo	81.29

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3e-34  Score=208.90  Aligned_cols=146  Identities=34%  Similarity=0.556  Sum_probs=129.4

Q ss_pred             cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcC
Q 031422            9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG   87 (160)
Q Consensus         9 ~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~   87 (160)
                      ||||++|+++ ..|++.|++++.+++++|+++|+|||||||++++||...+.. .....+.....+...+.++++|++++
T Consensus         2 ~ria~~Q~~~~~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~   80 (262)
T d1j31a_           2 VKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESRE-EVFDVAQQIPEGETTTFLMELARELG   80 (262)
T ss_dssp             EEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSSHH-HHHTTCBCTTTSHHHHHHHHHHHHHT
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCchhhhh-HhhhhhhhcccCHHHHHHHHhhhccC
Confidence            7999999998 689999999999999999999999999999999999866532 23344444445789999999999999


Q ss_pred             cEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422           88 VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY  160 (160)
Q Consensus        88 i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~  160 (160)
                      +.+++|++++.++++||+++++++ |+++..|+|+||+.    .|..+|.+|+..+++++++++|+|++||||
T Consensus        81 i~i~~g~~~~~~~~~~n~~~~i~~-g~~~~~y~K~~l~~----~e~~~~~~G~~~~~v~~~~~~~ig~~IC~D  148 (262)
T d1j31a_          81 LYIVAGTAEKSGNYLYNSAVVVGP-RGYIGKYRKIHLFY----REKVFFEPGDLGFKVFDIGFAKVGVMICFD  148 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEET-TEEEEEEECSSCCT----THHHHCCCCCSCSCEEECSSCEEEECCGGG
T ss_pred             ceEEeeeeecccccccccceEEEe-eeEEEEEeeeecCc----cCceeECCCCCCceEEEeCCceEEEEEehh
Confidence            999999999999999999999985 88999999999986    577889999876789999999999999998

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-33  Score=205.28  Aligned_cols=157  Identities=22%  Similarity=0.367  Sum_probs=129.0

Q ss_pred             CCCCCcccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhC--CCcEEEeccccccccccccchhhHhhhcccCCCChHHHH
Q 031422            2 EKGKRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK   78 (160)
Q Consensus         2 ~~~~~~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~--~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   78 (160)
                      |+.|+++||||++|+++ +.|.+.|++++.+++++|+++  ++|||||||++++||.+.++. +......+...++.++.
T Consensus         3 ~~~m~~~~kia~~Q~~~~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~   81 (281)
T d1f89a_           3 SKILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFR-KYSEVINPKEPSTSVQF   81 (281)
T ss_dssp             SSSBSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHH-HHTTBCCSSSCCHHHHH
T ss_pred             hhhhccCceEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEcCCcccCCCchhHHH-HHHhhhcccCCCHHHHH
Confidence            56788999999999998 689999999999999998654  888999999999999866432 12222233335789999


Q ss_pred             HHHHHHHcCcEEEeccc-c--ccCCeeeEEEEEEcCCCCEeEEeeeccCCCCC-----CcccceeecCCCCCceeEEeCC
Q 031422           79 MQELAKELGVVMPVSFF-E--EANNAHYNSIAIIDADGSDLGLYRKSHIPDGP-----GYQEKFYFNPGDTGFKVFQTKF  150 (160)
Q Consensus        79 l~~~a~~~~i~i~~g~~-~--~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~-----~~~e~~~~~~g~~~~~v~~~~~  150 (160)
                      ++++|++++++|++|.. +  ..++++||++++++++|+++..|+|+++++..     .+.|..+|.+|.. ..++++++
T Consensus        82 l~~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~~~k~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~  160 (281)
T d1f89a_          82 LSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEK-STTIDTKY  160 (281)
T ss_dssp             HHHHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCC-CEEEEETT
T ss_pred             HHHHhhhcCceeecceeeeeccccCceeeecccccccccccccccccccccccccccccccccceeeeecc-cccccccc
Confidence            99999999999999964 3  35689999999999999999999999987543     2456777888887 79999999


Q ss_pred             eeEEEEeccC
Q 031422          151 AKIGVGKGFY  160 (160)
Q Consensus       151 ~rig~~ICy~  160 (160)
                      +|+|++||||
T Consensus       161 ~~~g~~iC~d  170 (281)
T d1f89a_         161 GKFGVGICYD  170 (281)
T ss_dssp             EEEEECCGGG
T ss_pred             cccccccccc
Confidence            9999999998

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=100.00  E-value=3.8e-33  Score=206.72  Aligned_cols=154  Identities=26%  Similarity=0.408  Sum_probs=127.0

Q ss_pred             cccEEEEEeCCC---CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccc---hhhHhhhcccCCCChHHHHHH
Q 031422            7 REVVVSALQFAC---TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ---REDFFQRAKPYKDHPTILKMQ   80 (160)
Q Consensus         7 ~~~~va~~Q~~~---~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~l~   80 (160)
                      ++||||++|+.+   ..+.+.|++++.+++++|+++|+|||||||++++||.+...   ..++....+.....+.++.+.
T Consensus         2 ~~~~ia~~Q~~Pi~~~~~~~~~l~r~~~li~~A~~~gadlvvfPE~~l~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (303)
T d1uf5a_           2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLF   81 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHH
T ss_pred             cEEEEEEEccCCcCCCcCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCCccccccchhHHhhhhhhhcCCHHHHHHH
Confidence            679999999975   35789999999999999999999999999999999976533   222333333333567889999


Q ss_pred             HHHHHcCcEEEeccccc----cCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcc--------cceeecCCCCCceeEEe
Q 031422           81 ELAKELGVVMPVSFFEE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQT  148 (160)
Q Consensus        81 ~~a~~~~i~i~~g~~~~----~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~--------e~~~~~~g~~~~~v~~~  148 (160)
                      ++|+++++++++|+.++    .++++||++++++++|+++.+|+|+||++.+.+.        |..+|.+++...++|++
T Consensus        82 ~~A~~~~i~i~~G~~~~~~~~~~~~~yNs~~li~~~G~i~~~y~K~~L~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~  161 (303)
T d1uf5a_          82 EKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDV  161 (303)
T ss_dssp             HHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCSSCSCEEEE
T ss_pred             HHHHhcCceEEEEeeeeeeecCCCeeEEEEEeeccccccccccccccCCCCccccccccccccccceecccCCcceeEEe
Confidence            99999999999998764    3468999999999999999999999998765543        44556666655789999


Q ss_pred             CCeeEEEEeccC
Q 031422          149 KFAKIGVGKGFY  160 (160)
Q Consensus       149 ~~~rig~~ICy~  160 (160)
                      +++|+|++||||
T Consensus       162 ~~~rig~~IC~D  173 (303)
T d1uf5a_         162 DAAKMGMFIAND  173 (303)
T ss_dssp             TTEEEEECCGGG
T ss_pred             cCcEEEeecccc
Confidence            999999999998

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=3.8e-32  Score=198.41  Aligned_cols=151  Identities=19%  Similarity=0.270  Sum_probs=124.8

Q ss_pred             CcccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHH
Q 031422            6 RREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE   85 (160)
Q Consensus         6 ~~~~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   85 (160)
                      .+++|||++|+++..|++.|++++.+++++|+++|+|||||||+++.++.+.   .+..+.+.+. .++.++.++++|++
T Consensus         3 ~~~~rVA~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~~~~~~~~---~~~~~~a~~~-~~~~~~~l~~~a~~   78 (271)
T d1emsa2           3 TGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNK---NEQIDLAMAT-DCEYMEKYRELARK   78 (271)
T ss_dssp             CSEEEEEEECBCCCSCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSH---HHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHCcCeEEECCccccccCCCH---HHHHHHHHhh-cchHHHhhhhhhhc
Confidence            3568999999998889999999999999999999999999999975444322   2334444433 35788999999999


Q ss_pred             cCcEEEeccccc----cCCeeeEEEEEEcCCCCEeEEeeeccCCCCCC-----cccceeecCCCCCceeEEeCCeeEEEE
Q 031422           86 LGVVMPVSFFEE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPG-----YQEKFYFNPGDTGFKVFQTKFAKIGVG  156 (160)
Q Consensus        86 ~~i~i~~g~~~~----~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~-----~~e~~~~~~g~~~~~v~~~~~~rig~~  156 (160)
                      +++++++|.++.    .++++||++++++++|+++.+|+|.||++...     +.|..++.+|+....+++++++|+|++
T Consensus        79 ~~i~v~~G~~~~~~~~~~~~~yNsa~vi~~~g~i~~~~~K~~l~~~~~~~~~~~~e~~~~~~g~~~~~v~~~~~~~~g~~  158 (271)
T d1emsa2          79 HNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLS  158 (271)
T ss_dssp             TTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCSCCCCEEETTEEECCC
T ss_pred             ccccccccceeeeeecCCCceeEEEEEEeCCceEEEeeeeecccccccccccceeccccccCCccccceeecCCcccccc
Confidence            999999986643    24689999999999999999999999986543     346678889987678999999999999


Q ss_pred             eccC
Q 031422          157 KGFY  160 (160)
Q Consensus       157 ICy~  160 (160)
                      ||||
T Consensus       159 iC~D  162 (271)
T d1emsa2         159 ICYD  162 (271)
T ss_dssp             CGGG
T ss_pred             cccc
Confidence            9998

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.39  E-value=0.85  Score=30.69  Aligned_cols=66  Identities=20%  Similarity=-0.027  Sum_probs=41.2

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-ccCC-eeeEEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~-~~~Ns~~~i  109 (160)
                      ..+.++.+|+|+++.|=.+...                    .....++..|.+++++++..... .+++ .++=.+.++
T Consensus       154 ~~~~~~~~ga~lil~p~~~~~~--------------------~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~i~  213 (262)
T d1j31a_         154 SARTLALKGAEIIAHPANLVMP--------------------YAPRAMPIRALENRVYTITADRVGEERGLKFIGKSLIA  213 (262)
T ss_dssp             HHHHHHHTTCSEEEEECCCCSS--------------------CHHHHHHHHHHHHTCEEEEECCCSEETTEECCCCCEEE
T ss_pred             HHHHHHHhccccccCCcccccc--------------------cchhhhhhhhhcccceEEEEecccccCCccccCCCEEE
Confidence            3455567899999998432211                    12234566788999999864332 2333 233446788


Q ss_pred             cCCCCEeE
Q 031422          110 DADGSDLG  117 (160)
Q Consensus       110 ~~~G~i~~  117 (160)
                      +|+|+++.
T Consensus       214 ~p~G~~l~  221 (262)
T d1j31a_         214 SPKAEVLS  221 (262)
T ss_dssp             CTTSCEEE
T ss_pred             eCCCCEEE
Confidence            89999864

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=89.37  E-value=1  Score=30.84  Aligned_cols=79  Identities=16%  Similarity=0.028  Sum_probs=43.2

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec-cccccCC-eeeEEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS-FFEEANN-AHYNSIAII  109 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g-~~~~~~~-~~~Ns~~~i  109 (160)
                      ..+.++.+|+++++.|=.+.+........    ....   .......++..|.+++++++.. ....+++ .++=.+.++
T Consensus       179 ~~~~la~~Ga~ii~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~arA~en~~~vv~~n~~g~~~~~~~~G~S~I~  251 (303)
T d1uf5a_         179 AWRVMGLRGAEIICGGYNTPTHNPPVPQH----DHLT---SFHHLLSMQAGSYQNGAWSAAAGKAGMEENCMLLGHSCIV  251 (303)
T ss_dssp             HHHHHHHTTCSEEEEEECCBSCCTTCGGG----GGGH---HHHHHHHHHHHHHHHTCEEEEEEBCEEETTEEECCCCEEE
T ss_pred             hhhhHhhCCCEEEEEeccccccCCccccc----chhh---cchhhhhhhhhhhcccceeeeccccccccccccccCcEEE
Confidence            44455678999999876543322111100    0000   0122233455677899998763 3333333 344557899


Q ss_pred             cCCCCEeE
Q 031422          110 DADGSDLG  117 (160)
Q Consensus       110 ~~~G~i~~  117 (160)
                      +|+|+++.
T Consensus       252 ~p~G~vla  259 (303)
T d1uf5a_         252 APTGEIVA  259 (303)
T ss_dssp             CTTSCEEE
T ss_pred             eCCCCEEE
Confidence            99999874

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.96  E-value=0.81  Score=30.87  Aligned_cols=70  Identities=13%  Similarity=0.054  Sum_probs=42.1

Q ss_pred             HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-cc-CC-eeeEEEEE
Q 031422           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-NN-AHYNSIAI  108 (160)
Q Consensus        32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~-~~-~~~Ns~~~  108 (160)
                      ..+..+.+++++|+.|=......        ..        ......++..+.+.+++++..... .. ++ ..+=.+++
T Consensus       168 ~~~~~~~~ga~~i~~p~a~~~~~--------~~--------~~~~~~~~~~a~~~~~~~~~~n~~g~~~~~~~~~G~S~I  231 (271)
T d1emsa2         168 LSLWNRKRGAQLLSFPSAFTLNT--------GL--------AHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMV  231 (271)
T ss_dssp             HHHHHHHTTCSEEECCBCCCHHH--------HH--------HHHHHHHHHHHHHHTCEEEECBBEEEEETTEEEECCCEE
T ss_pred             HHHHHHhhcCcEEEecccccccc--------cc--------hhHHHHHHHHHhhhccccccccccccCCCCCEEeeeeEE
Confidence            34556678999999994322100        00        122344677788899999875332 22 22 33445678


Q ss_pred             EcCCCCEeE
Q 031422          109 IDADGSDLG  117 (160)
Q Consensus       109 i~~~G~i~~  117 (160)
                      ++|+|+++.
T Consensus       232 ~~P~G~il~  240 (271)
T d1emsa2         232 VDPWGAVVA  240 (271)
T ss_dssp             ECTTSCEEE
T ss_pred             EcCCCcEEE
Confidence            899999864

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.29  E-value=1.7  Score=29.27  Aligned_cols=69  Identities=14%  Similarity=0.075  Sum_probs=41.7

Q ss_pred             HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCC--eeeEEEEEE
Q 031422           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN--AHYNSIAII  109 (160)
Q Consensus        33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~--~~~Ns~~~i  109 (160)
                      .+..+.+++++++.|=.......                .......++..|.+++++++...... .++  ..+=.++++
T Consensus       177 ~r~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii  240 (281)
T d1f89a_         177 AMLSARKGAFAMIYPSAFNTVTG----------------PLHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVV  240 (281)
T ss_dssp             HHHHHHTTEEEEEEECCCBTTHH----------------HHHHHHHHHHHHHHHTSEEEEECCCCCTTSSSCBCCCCEEE
T ss_pred             hhhhhcccccceeEeeccccccc----------------cccccchhhhhcccccccceeeeecccCCCCcEeeeceEEE
Confidence            44556778999999854221100                01233445667888999988754432 222  233456889


Q ss_pred             cCCCCEeE
Q 031422          110 DADGSDLG  117 (160)
Q Consensus       110 ~~~G~i~~  117 (160)
                      +|+|+++.
T Consensus       241 ~p~G~vl~  248 (281)
T d1f89a_         241 DPRGKIVA  248 (281)
T ss_dssp             CTTSCEEE
T ss_pred             cCCCCEEE
Confidence            99999763