Citrus Sinensis ID: 031444

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
MSSAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYVGEDRATSSTKDFHGPSTAADNRSNGVYGSGFSGLSHDPSGHGSKGSSKSEQERRKGIPWTEEEHRQIWKRRLEKHFKKFCDI
ccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHccc
ccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHccccccc
mssaatwsrEEDKAFENAIAMHcieeddskEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVnaieagniplpnyvgedratsstkdfhgpstaadnrsngvygsgfsglshdpsghgskgsskseqerrkgipwteEEHRQIWKRRLEKHFKKFCDI
mssaatwsreedKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYVGEDRATSSTKDFHGPSTAADNRSNGVYGSGFSGlshdpsghgskgsskseqerrkgipwteeehrqIWKRRLEKHFKKFCDI
MSSAATWSREEDKAFENAIAMHCIeeddskeeqqqqwqkIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYVGEDRATSSTKDFHGPSTAADNRSNGVYGSGFSGLSHDPsghgskgssksEQERRKGIPWTEEEHRQIWKRRLEKHFKKFCDI
***************************************************LKQHYQILLEDVNAIEAGNIPLPNYV******************************************************************IWKRRL**********
****ATW*REEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYVGEDRATSSTKDFHGPSTAADNRSNGVYGSGFS*****************************EEHRQIWKRRLEKHFKKFCDI
***********DKAFENAIAMHCIEE**************ASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYVGEDRATSSTKDFHGPSTAADNRSNGVYGSGFSGLS**********************PWTEEEHRQIWKRRLEKHFKKFCDI
*****TWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYVG*****************************************************KGIPWTEEEHRQIWKRRLEKHFKKFCDI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYVGEDRATSSTKDFHGPSTAADNRSNGVYGSGFSGLSHDPSGHGSKGSSKSEQERRKGIPWTEEEHRQIWKRRLEKHFKKFCDI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query159 2.2.26 [Sep-21-2011]
Q8S9H7 307 Transcription factor DIVA N/A no 0.805 0.416 0.363 3e-16
Q58FS393 Transcription factor RADI N/A no 0.421 0.720 0.418 3e-11
Q1A17397 Protein RADIALIS-like 6 O no no 0.509 0.835 0.363 7e-11
F4JVB8100 Protein RADIALIS-like 1 O no no 0.396 0.63 0.371 8e-11
Q6NNN081 Protein RADIALIS-like 3 O no no 0.396 0.777 0.385 2e-09
Q1G3C477 Protein RADIALIS-like 4 O no no 0.371 0.766 0.469 1e-08
Q8GW75100 Protein RADIALIS-like 5 O no no 0.433 0.69 0.368 3e-07
Q9SIJ5101 Protein RADIALIS-like 2 O no no 0.396 0.623 0.328 8e-07
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1 Back     alignment and function desciption
 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 26/154 (16%)

Query: 3   SAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLED 62
           S   W+  E+KAFENA+A+         E    +W+++A  VP ++V ++ + Y+ L +D
Sbjct: 22  STTRWTAAENKAFENALAVF-------DENTPNRWERVAERVPGKTVGDVMRQYKELEDD 74

Query: 63  VNAIEAGNIPLPNYVGEDRATSSTKDFHGPSTAADNRSNGVYGSGFSGLSHDPSGHGSKG 122
           V++IEAG +P+P Y     +TSS       S           G GF G        G K 
Sbjct: 75  VSSIEAGFVPVPGY-----STSSPFTLEWGS-----------GHGFDGFKQSYGTGGRKS 118

Query: 123 SS--KSEQERRKGIPWTEEEHRQIWKRRLEKHFK 154
           SS   SEQER+KG+PWTEEEH+ ++   L+K+ K
Sbjct: 119 SSGRPSEQERKKGVPWTEEEHK-LFLMGLKKYGK 151
Involved in the dorsovental asymmetry of flowers. Promotes ventral identity.
Antirrhinum majus (taxid: 4151)
>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1 Back     alignment and function description
>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1 Back     alignment and function description
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1 Back     alignment and function description
>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1 Back     alignment and function description
>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1 Back     alignment and function description
>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query159
449440923 307 PREDICTED: transcription factor DIVARICA 0.886 0.459 0.598 1e-41
255541820 297 DNA binding protein, putative [Ricinus c 0.855 0.457 0.678 6e-41
255641394243 unknown [Glycine max] 0.855 0.559 0.648 8e-41
351727817 307 MYB transcription factor MYB109 [Glycine 0.855 0.442 0.648 5e-40
225455856 296 PREDICTED: uncharacterized protein LOC10 0.849 0.456 0.654 6e-38
388515971 309 unknown [Lotus japonicus] 0.867 0.446 0.605 2e-35
327412643 302 putative MYB transcription factor [Rosa 0.836 0.440 0.576 4e-30
302398971 306 MYBR domain class transcription factor [ 0.861 0.447 0.557 1e-29
297847182 310 hypothetical protein ARALYDRAFT_891746 [ 0.817 0.419 0.5 4e-28
18402458 314 myb/SANT-like DNA-binding domain-contain 0.836 0.423 0.513 9e-28
>gi|449440923|ref|XP_004138233.1| PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] gi|449477076|ref|XP_004154922.1| PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 114/147 (77%), Gaps = 6/147 (4%)

Query: 2   SSAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLE 61
           + +A W++EEDKAFENAIA H  EE +  +  ++ W+KIASMVPS+++E+LKQHYQ+L++
Sbjct: 3   TGSAVWTKEEDKAFENAIATHWGEELEGSKGSEEMWEKIASMVPSKNMEDLKQHYQMLVD 62

Query: 62  DVNAIEAGNIPLPNY---VGEDRATSSTKDFH-GPSTAADN--RSNGVYGSGFSGLSHDP 115
           DV AIEAG IP+PNY   VGE+ A++  KD H  P  ++D+  R N  +GSGFSGLSHD 
Sbjct: 63  DVGAIEAGQIPIPNYASSVGEETASTKEKDHHLHPHGSSDSNKRPNSGFGSGFSGLSHDS 122

Query: 116 SGHGSKGSSKSEQERRKGIPWTEEEHR 142
           S H +KG S+SEQERRKGIPWTEEEHR
Sbjct: 123 SAHATKGGSRSEQERRKGIPWTEEEHR 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255541820|ref|XP_002511974.1| DNA binding protein, putative [Ricinus communis] gi|223549154|gb|EEF50643.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255641394|gb|ACU20974.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|351727817|ref|NP_001235894.1| MYB transcription factor MYB109 [Glycine max] gi|356511607|ref|XP_003524515.1| PREDICTED: uncharacterized protein LOC100812196 [Glycine max] gi|110931704|gb|ABH02851.1| MYB transcription factor MYB109 [Glycine max] Back     alignment and taxonomy information
>gi|225455856|ref|XP_002274167.1| PREDICTED: uncharacterized protein LOC100245771 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388515971|gb|AFK46047.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|327412643|emb|CCA29110.1| putative MYB transcription factor [Rosa hybrid cultivar] Back     alignment and taxonomy information
>gi|302398971|gb|ADL36780.1| MYBR domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|297847182|ref|XP_002891472.1| hypothetical protein ARALYDRAFT_891746 [Arabidopsis lyrata subsp. lyrata] gi|297337314|gb|EFH67731.1| hypothetical protein ARALYDRAFT_891746 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18402458|ref|NP_564537.1| myb/SANT-like DNA-binding domain-containing protein [Arabidopsis thaliana] gi|7770343|gb|AAF69713.1|AC016041_18 F27J15.20 [Arabidopsis thaliana] gi|21555865|gb|AAM63950.1| unknown [Arabidopsis thaliana] gi|41618992|gb|AAS09998.1| MYB transcription factor [Arabidopsis thaliana] gi|89274145|gb|ABD65593.1| At1g49010 [Arabidopsis thaliana] gi|332194260|gb|AEE32381.1| myb/SANT-like DNA-binding domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query159
TAIR|locus:2028461 314 AT1G49010 [Arabidopsis thalian 0.817 0.414 0.456 1.4e-25
TAIR|locus:2159607 298 AT5G08520 [Arabidopsis thalian 0.830 0.442 0.350 1.4e-16
TAIR|locus:2042872 298 AT2G38090 [Arabidopsis thalian 0.830 0.442 0.351 1.3e-15
TAIR|locus:2150149267 AT5G01200 [Arabidopsis thalian 0.792 0.471 0.335 8.8e-15
TAIR|locus:2074723263 AT3G11280 [Arabidopsis thalian 0.578 0.349 0.333 1.3e-14
TAIR|locus:2166459 277 AT5G05790 [Arabidopsis thalian 0.415 0.238 0.301 4.1e-13
TAIR|locus:2154508 288 AT5G58900 [Arabidopsis thalian 0.811 0.447 0.326 1.2e-12
UNIPROTKB|Q8S9H7 307 DIVARICATA "Transcription fact 0.817 0.423 0.328 2.1e-12
TAIR|locus:2175478215 AT5G04760 [Arabidopsis thalian 0.509 0.376 0.269 5.6e-11
TAIR|locus:2171711 337 AT5G23650 [Arabidopsis thalian 0.830 0.391 0.290 6.2e-10
TAIR|locus:2028461 AT1G49010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 69/151 (45%), Positives = 91/151 (60%)

Query:     2 SSAATWSREEDKAFENAIAMHCIXXXXXXXXXXXXXXXIASMVPSRSVEELKQHYQILLE 61
             S  ATWSREE+KAFENAIA+HC+               ++SMVPS+++EE+K+HYQILLE
Sbjct:     3 SVVATWSREEEKAFENAIALHCVEEEITEDQWNK----MSSMVPSKALEEVKKHYQILLE 58

Query:    62 DVNAIEAGNIPLPNY------VGEDRATSST----KDFHGPSTAADNRSNGVYGSGFSGL 111
             DV AIE G +PLP Y      + ++ A ++T    +D H  S +++ + N     G SG+
Sbjct:    59 DVKAIENGQVPLPRYHHRKGLIVDEAAAAATSPANRDSHS-SGSSEKKPN----PGTSGI 113

Query:   112 SHDPXXXXXXXXXXXEQERRKGIPWTEEEHR 142
             S              EQERRKGIPWTEEEHR
Sbjct:   114 SSS--NGGRSGGSRAEQERRKGIPWTEEEHR 142
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0009651 "response to salt stress" evidence=IEP
GO:0009733 "response to auxin stimulus" evidence=IEP
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0016556 "mRNA modification" evidence=RCA
TAIR|locus:2159607 AT5G08520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042872 AT2G38090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150149 AT5G01200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074723 AT3G11280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166459 AT5G05790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154508 AT5G58900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8S9H7 DIVARICATA "Transcription factor DIVARICATA" [Antirrhinum majus (taxid:4151)] Back     alignment and assigned GO terms
TAIR|locus:2175478 AT5G04760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171711 AT5G23650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017631001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (296 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query159
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 4e-07
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 7e-07
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 1e-06
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information 
 Score = 44.1 bits (105), Expect = 4e-07
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 10/56 (17%)

Query: 6  TWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLE 61
           W+ EED+     +  +           +  W+KIA  +P R+ E+ ++ ++ LL+
Sbjct: 3  EWTEEEDELLIELVKKY----------GKNNWEKIAKELPGRTAEQCRERWRNLLK 48

Length = 49
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 159
KOG0724 335 consensus Zuotin and related molecular chaperones 99.44
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.19
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.0
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.95
PLN03212249 Transcription repressor MYB5; Provisional 98.51
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.37
PLN03091 459 hypothetical protein; Provisional 98.32
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 98.13
PLN03212249 Transcription repressor MYB5; Provisional 97.73
PLN03091 459 hypothetical protein; Provisional 97.47
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.43
COG5259 531 RSC8 RSC chromatin remodeling complex subunit RSC8 97.4
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.33
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.33
KOG4167 907 consensus Predicted DNA-binding protein, contains 97.28
KOG0048238 consensus Transcription factor, Myb superfamily [T 97.09
KOG1279 506 consensus Chromatin remodeling factor subunit and 96.76
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 96.76
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 96.6
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 96.52
KOG0049 939 consensus Transcription factor, Myb superfamily [T 95.84
PLN031421033 Probable chromatin-remodeling complex ATPase chain 94.62
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 94.56
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 94.3
KOG0048238 consensus Transcription factor, Myb superfamily [T 94.2
KOG1194 534 consensus Predicted DNA-binding protein, contains 92.21
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 91.7
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 91.57
KOG4329 445 consensus DNA-binding protein [General function pr 90.71
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 90.18
KOG0049 939 consensus Transcription factor, Myb superfamily [T 89.85
KOG4329445 consensus DNA-binding protein [General function pr 88.89
KOG4468 782 consensus Polycomb-group transcriptional regulator 88.74
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 86.77
COG5147 512 REB1 Myb superfamily proteins, including transcrip 86.15
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 85.87
KOG3554 693 consensus Histone deacetylase complex, MTA1 compon 80.59
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 80.09
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.44  E-value=4.2e-13  Score=114.88  Aligned_cols=143  Identities=31%  Similarity=0.463  Sum_probs=96.4

Q ss_pred             CCCCHHHHHHHHHHHhhhcccCCC---ChHHHhHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 031444            5 ATWSREEDKAFENAIAMHCIEEDD---SKEEQQQQWQKIASMVPS-RSVEELKQHYQILLEDVNAIEAGNIPLPNYVGED   80 (159)
Q Consensus         5 ~~WT~eEdK~FE~ALa~~~~~~~~---~p~~~~drWekIA~~VPG-KT~~ev~~hY~~L~eDV~~IEsG~vplP~y~~~~   80 (159)
                      ..|+.++.|.|+.||+.|  ..+.   ++    ++|++++.+||+ ++..+++++|..++.||..|+++++|+|.|....
T Consensus        32 ~~~~~~~~k~i~ka~~i~--~~~~~~~t~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~  105 (335)
T KOG0724|consen   32 SLWTEEEFKKIEKALAIL--DDDEPRRTP----DSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSD  105 (335)
T ss_pred             hhhHHHHHHHHHHHHHHH--hccccccch----hhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCccccCccc
Confidence            569999999999999999  5421   66    999999999999 9999999999999999999999999999998542


Q ss_pred             CCCCCCCCCCCCCCccccCCCCcCCCC------CC-CCCCC--CCCCCCCCCCcchhhhcCCCCCCHHHHHHHHHHHHHH
Q 031444           81 RATSSTKDFHGPSTAADNRSNGVYGSG------FS-GLSHD--PSGHGSKGSSKSEQERRKGIPWTEEEHRQIWKRRLEK  151 (159)
Q Consensus        81 ~~~~~~~~~~~~~~t~~~~~~~~~~~G------~~-~~~~~--~~~~~~k~~~~~~~~rkkg~pWteeEHr~fl~g~l~k  151 (159)
                      ........+..  +-........+.+-      +. .....  ..+. .........++++|++||+.+|++|+++ +.+
T Consensus       106 ~~~~~~~~~~~--~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  181 (335)
T KOG0724|consen  106 TSLAEVEEFYN--FWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGT-QRGKSNAEELRRKGTPVTERERKLVLLA-LKK  181 (335)
T ss_pred             cccccccccCC--ccccccccccCCCCCCcccccccchhhhhhcccc-cccccchhhhhhccchhHHHHHHHHHhh-hcc
Confidence            11110000000  00000000111110      00 00000  0000 1112345778999999999999999999 999


Q ss_pred             hhcccc
Q 031444          152 HFKKFC  157 (159)
Q Consensus       152 ~gk~~~  157 (159)
                      ||++.+
T Consensus       182 ~~~~~~  187 (335)
T KOG0724|consen  182 DGKIDW  187 (335)
T ss_pred             cccccc
Confidence            999864

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4329 consensus DNA-binding protein [General function prediction only] Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG4329 consensus DNA-binding protein [General function prediction only] Back     alignment and domain information
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query159
2cjj_A93 Crystal Structure Of The Myb Domain Of The Rad Tran 1e-09
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus Length = 93 Back     alignment and structure 
Iteration: 1

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 3  SAATWSREEDKAFENAIAMHCIXXXXXXXXXXXXXXXIASMVPSRSVEELKQHYQILLED 62
          S   WS +E+KAFE A+A++                 +A  V  R+ EE+K+HY+IL+ED
Sbjct: 7  SGRPWSAKENKAFERALAVY-------DKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59
Query: 63 VNAIEAGNIPLPNY 76
          +  IE+G +P PNY
Sbjct: 60 IKYIESGKVPFPNY 73

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query159
2cjj_A93 Radialis; plant development, DNA-binding protein, 5e-24
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 2e-15
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 1e-13
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 4e-05
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 5e-04
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 5e-05
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 5e-05
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 7e-05
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 1e-04
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 2e-04
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 2e-04
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93 Back     alignment and structure
 Score = 88.8 bits (220), Expect = 5e-24
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 7/76 (9%)

Query: 1  MSSAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60
            S   WS +E+KAFE A+A++        ++   +W  +A  V  R+ EE+K+HY+IL+
Sbjct: 5  RGSGRPWSAKENKAFERALAVY-------DKDTPDRWANVARAVEGRTPEEVKKHYEILV 57

Query: 61 EDVNAIEAGNIPLPNY 76
          ED+  IE+G +P PNY
Sbjct: 58 EDIKYIESGKVPFPNY 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query159
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.92
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 99.91
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 99.82
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 99.8
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.74
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.42
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.38
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.34
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.34
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 99.29
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.28
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.2
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.16
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 99.15
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.15
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.13
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.12
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.06
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.05
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 98.99
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 98.98
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 98.97
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.92
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.89
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 98.84
2crg_A70 Metastasis associated protein MTA3; transcription 98.84
2xag_B 482 REST corepressor 1; amine oxidase, chromatin regul 98.82
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 98.81
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 98.78
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.74
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.73
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 98.69
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.69
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.61
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.03
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.57
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.52
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 98.51
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.43
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.32
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.3
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 98.17
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 98.13
2crg_A70 Metastasis associated protein MTA3; transcription 98.01
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.88
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 97.8
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 97.78
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 97.68
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 97.68
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 97.67
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 96.82
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.55
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 97.53
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 97.48
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 97.41
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.32
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.17
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 96.68
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 96.46
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.39
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 96.18
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 95.1
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 95.95
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 95.92
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 95.88
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 95.87
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 95.7
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 95.52
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 95.46
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 95.38
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 95.29
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 95.14
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 95.13
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 95.09
2y9y_A 374 Imitation switch protein 1 (DEL_ATPase); transcrip 94.94
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 94.85
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 94.77
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 94.67
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 94.42
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 93.64
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 93.23
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 92.96
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 92.88
2cjj_A93 Radialis; plant development, DNA-binding protein, 92.68
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 91.91
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 91.01
2xb0_X 270 Chromo domain-containing protein 1; hydrolase, DNA 89.29
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 89.23
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
Probab=99.92  E-value=3.3e-25  Score=162.14  Aligned_cols=69  Identities=45%  Similarity=0.876  Sum_probs=61.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 031444            3 SAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYVG   78 (159)
Q Consensus         3 ~~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vplP~y~~   78 (159)
                      +...||.+||++||+||++|  +++ +|    +||++||++|||||+.||++||+.|++||..||+|+||+|+|..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~--~~~-~~----~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~   75 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVY--DKD-TP----DRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRT   75 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHS--CTT-CT----THHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred             CCCCCCHHHHHHHHHHHHHc--CCC-CC----chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence            34689999999999999999  998 89    99999999999999999999999999999999999999999974
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 159
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 6e-13
d2cqqa159 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 3e-08
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 6e-06
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 1e-04
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 3e-04
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 0.002
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 0.004
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 58.4 bits (141), Expect = 6e-13
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 7/66 (10%)

Query: 7  WSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAI 66
          WS +E+KAFE A+A++        ++   +W  +A  V  R+ EE+K+HY+IL+ED+  I
Sbjct: 4  WSAKENKAFERALAVY-------DKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI 56

Query: 67 EAGNIP 72
          E+G +P
Sbjct: 57 ESGKVP 62
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query159
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.87
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.76
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.56
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.17
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.08
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.05
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.97
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.93
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.88
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.85
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.74
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 98.57
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 98.54
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 98.54
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.53
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 98.24
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 98.07
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.95
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 97.88
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 97.77
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 97.66
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 97.25
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 97.07
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.06
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 96.88
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 96.83
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 96.41
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 96.26
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 95.21
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 94.52
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 91.6
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 85.91
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 82.69
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 81.99
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.87  E-value=1.3e-22  Score=135.93  Aligned_cols=62  Identities=44%  Similarity=0.874  Sum_probs=60.1

Q ss_pred             CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q 031444            5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPL   73 (159)
Q Consensus         5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vpl   73 (159)
                      +.||.+||++|+.||+.|  +++ ++    ++|.+||..|||||+.||++||+.|++||+.||+|+||+
T Consensus         2 ~~WT~eEd~~L~~~v~~~--~~~-~~----~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~iesg~vpf   63 (63)
T d2cjja1           2 RPWSAKENKAFERALAVY--DKD-TP----DRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF   63 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHS--CTT-CT----THHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cCCCHHHHHHHHHHHHHH--CCC-Cc----hHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccccCCCCC
Confidence            579999999999999999  988 88    999999999999999999999999999999999999996
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure