Citrus Sinensis ID: 031471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKLRASFLEFFFFFFGLNCYYYFVSCVTLALLLLSINFLVLNYICRKF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maeeepkkletetptepppppstepaapaaaeppkdvaddktvipsppaedkpeeskalavvdkapeaeppagekstegsvnrDAVLARVETEKRISLIRAWEESEKSQAENKLRASFLEFFFFFFGLNCYYYFVSCVTLALLLLSINFLVLNYICRKF
Flexible Loop (DISEMBL)
maeeepkkletetptepppppSTEPAAPAAAEPPKDVADDKTVIpsppaedkpeesKALAVVDKAPeaeppagekstegsvnrdavLARVETEKRISLiraweeseksQAENKLRASFLEFFFFFFGLNCYYYFVSCVTLALLLLSINFLVLNYICRKF
Low Complexity Region (SEG)
MaeeepkkletetptepppppstepaapaaaeppkDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKLRASFLEffffffGLNCYYYFVSCVTlallllsinflvlNYICRKF
Disordered region (IsUnstruct)
**********************************************************************************************RISLIRAW***********LRASFLEFFFFFFGLNCYYYFVSCVTLALLLLSINFLVLNYICR**
Disordered Region (DISOPRED)
**************************************************************************************LARVETEKRISLIRA****************FLEFFFFFFGLNCYYYFVSCVTLALLLLSINFLVLNYICRKF
Disordered Region (DISEMBL)
*************************************ADDKTVIPS*************AVVDK****************VNRDAVLARVETEKRISLIRAWE********NKLRASFLEFFFFFFGLNCYYYFVSCVTLALLLLSINFLVLNYICRKF
Disordered Region (DISPRO)
********************************************************KAL***DKAP**************VNRDAVLARVETEKRISLIRAWEESEKSQAENKLRASFLEFFFFFFGLNCYYYFVSCVTLALLLLSINFLVLNYICRKF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKLRASFLEFFFFFFGLNCYYYFVSCVTLALLLLSINFLVLNYICRKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.628	0.505	0.583	5e-19
O80837	190	Remorin OS=Arabidopsis th	no	no	0.685	0.573	0.424	2e-12
Q9M2D8	212	Uncharacterized protein A	no	no	0.540	0.405	0.466	6e-10

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 86/120 (71%), Gaps = 20/120 (16%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDV-ADDKTVI-PS--PPAEDK--PE 54
           MAE E KK+E     +P PP      AP   E PK+V AD+K ++ P+  PPAE+K  P+
Sbjct: 1   MAELEAKKVEI---VDPAPP------APGPVEAPKEVVADEKAIVAPALPPPAEEKEKPD 51

Query: 55  ESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENK 113
           +SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AENK
Sbjct: 52  DSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENK 107

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.
Solanum tuberosum (taxid: 4113)

>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 16/125 (12%)

Query: 1   MAEEEP-KKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKAL 59
           MAEE+   K++ E+P    P     PA       P +VAD+K  I +PP    P ESKAL
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPA-------PVEVADEK--IHNPP----PVESKAL 47

Query: 60  AVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKLRASFL 119
           AVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN+ +    
Sbjct: 48  AVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKIS 105

Query: 120 EFFFF 124
           +   +
Sbjct: 106 DVHAW 110

Exhibits a non sequence-specific DNA-binding activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 4/90 (4%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EK
Sbjct: 47  KDVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEK 102

Query: 95  RISLIRAWEESEKSQAENKLRASFLEFFFF 124
           R+S +RAWEESEKS+AENK      +   +
Sbjct: 103 RLSFVRAWEESEKSKAENKAEKKIADVHAW 132


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.131    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,380,611
Number of Sequences: 539616
Number of extensions: 2881560
Number of successful extensions: 43929
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 1388
Number of HSP's that attempted gapping in prelim test: 27433
Number of HSP's gapped (non-prelim): 11190
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
432278309	199	remorin [Morus indica]	0.672	0.537	0.684	5e-29
255539463	182	Remorin, putative [Ricinus communis] gi|	0.484	0.423	0.698	6e-22
351723623	205	uncharacterized protein LOC100499700 [Gl	0.496	0.385	0.695	6e-21
224120028	204	predicted protein [Populus trichocarpa]	0.685	0.534	0.678	6e-21
351726140	206	uncharacterized protein LOC100500457 [Gl	0.496	0.383	0.670	3e-20
255541538	188	Remorin, putative [Ricinus communis] gi|	0.641	0.542	0.508	3e-19
395146529	422	hypothetical protein [Linum usitatissimu	0.672	0.253	0.589	7e-19
449517457	189	PREDICTED: remorin-like [Cucumis sativus	0.471	0.396	0.658	3e-18
224136994	201	predicted protein [Populus trichocarpa]	0.465	0.368	0.658	3e-18
358348650	209	Remorin [Medicago truncatula] gi|3555042	0.679	0.516	0.525	1e-17

>gi|432278309|gb|AGB07445.1| remorin [Morus indica]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/114 (68%), Positives = 89/114 (78%), Gaps = 7/114 (6%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALA 60
           MAEE+P K+E E P+  PP   TE     A EPPKDV ++K+VIP PP EDKP+ESKALA
Sbjct: 1   MAEEQPIKVEPEAPSSEPP---TEAKVKPAEEPPKDVTEEKSVIPHPPPEDKPDESKALA 57

Query: 61  VVDKAPEAEPPAGEKST-EGSVNRDAVLARVETEKRISLIRAWEESEKSQAENK 113
           VVD  PE   PA EKS+ EGS+NRDAVLARV TEKR+SLIRAWEESEKS+AENK
Sbjct: 58  VVDMEPE---PAAEKSSSEGSINRDAVLARVATEKRLSLIRAWEESEKSKAENK 108

Source: Morus indica

Species: Morus indica

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539463|ref|XP_002510796.1| Remorin, putative [Ricinus communis] gi|223549911|gb|EEF51398.1| Remorin, putative [Ricinus communis]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 68/83 (81%), Gaps = 6/83 (7%)

Query: 31  AEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARV 90
           +EPPKDVA++K+ IP PP E   ++SKAL  V+K+ E      EKSTEGSVNRDAVLARV
Sbjct: 15  SEPPKDVAEEKSAIPPPPQEKASDDSKALVAVEKSVE------EKSTEGSVNRDAVLARV 68

Query: 91  ETEKRISLIRAWEESEKSQAENK 113
           ETEKR+SLIRAWEESEKS+AENK
Sbjct: 69  ETEKRVSLIRAWEESEKSKAENK 91

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723623|ref|NP_001238565.1| uncharacterized protein LOC100499700 [Glycine max] gi|255625905|gb|ACU13297.1| unknown [Glycine max]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 3/82 (3%)

Query: 32  EPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVE 91
           E PKDVA++K+VIP P ++DKP+ESKAL +V+K  E    A  K TEGSVNRDAVLARV 
Sbjct: 36  EAPKDVAEEKSVIPVPSSDDKPDESKALVLVEKTQEV---AEVKPTEGSVNRDAVLARVA 92

Query: 92  TEKRISLIRAWEESEKSQAENK 113
           TEKR+SLI+AWEESEKS+AENK
Sbjct: 93  TEKRLSLIKAWEESEKSKAENK 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120028|ref|XP_002318224.1| predicted protein [Populus trichocarpa] gi|222858897|gb|EEE96444.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/115 (67%), Positives = 90/115 (78%), Gaps = 6/115 (5%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAA-AEPPKDVADDKTVIPSPP-AEDKPEESKA 58
           MAEEEPKK+ETETP+E PPPP    A P    +  KDVA++KTVI  PP  E+K EESKA
Sbjct: 1   MAEEEPKKVETETPSETPPPPPPPLAEPEPEVKAQKDVAEEKTVISPPPLVEEKVEESKA 60

Query: 59  LAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENK 113
           +AVV+KA E+     E+ TEGSVNRDAVLARV TEKRISLI+AWEESEKS+AENK
Sbjct: 61  VAVVEKASES----AEEKTEGSVNRDAVLARVVTEKRISLIKAWEESEKSKAENK 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726140|ref|NP_001238396.1| uncharacterized protein LOC100500457 [Glycine max] gi|255630375|gb|ACU15544.1| unknown [Glycine max]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 67/82 (81%), Gaps = 3/82 (3%)

Query: 32  EPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVE 91
           E PKDV ++K+VIP P ++DKP+ESKAL +V+K  E    A  K TEGS+NRDAVLARV 
Sbjct: 37  EAPKDVTEEKSVIPVPSSDDKPDESKALVLVEKTQEV---AEVKPTEGSINRDAVLARVA 93

Query: 92  TEKRISLIRAWEESEKSQAENK 113
           TEKR+SLI+AWEESEKS+AENK
Sbjct: 94  TEKRLSLIKAWEESEKSKAENK 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541538|ref|XP_002511833.1| Remorin, putative [Ricinus communis] gi|223549013|gb|EEF50502.1| Remorin, putative [Ricinus communis]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 16/118 (13%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALA 60
           MAE+E KKLE E+P  P P           AE   DVA DK  +P+P  E+KP++SKALA
Sbjct: 1   MAEQEAKKLEAESPVAPAP-----------AEAKSDVAHDKATVPTP--EEKPDDSKALA 47

Query: 61  VVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKLRASF 118
           VV+K PE+ P   +K++ GS++RD  LA VE EKR S I+AWE+SEKS+AENK +   
Sbjct: 48  VVEKVPESGP---KKTSGGSLDRDIALAEVEKEKRNSFIKAWEDSEKSKAENKAQKKL 102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146529|gb|AFN53683.1| hypothetical protein [Linum usitatissimum]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 79/112 (70%), Gaps = 5/112 (4%)

Query: 3   EEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVV 62
           EEE KKL    P  P          PAA EPPKDVA++K+VIP+PP+E+KP++S   A+V
Sbjct: 222 EEEAKKL---VPESPAAATVVVEPPPAAEEPPKDVAEEKSVIPTPPSEEKPDDSSK-AIV 277

Query: 63  DKAPEAEPPAGE-KSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENK 113
               EAEP + E K  EGSVNRD  LARVETEKR+S I+AWEESEKS+AENK
Sbjct: 278 PLQKEAEPVSEEAKPVEGSVNRDLELARVETEKRLSFIKAWEESEKSKAENK 329

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517457|ref|XP_004165762.1| PREDICTED: remorin-like [Cucumis sativus]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 65/79 (82%), Gaps = 4/79 (5%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDV ++K+VIP PP E K ++SKAL +V+K PE   P   K+TEGSVNRDAVLA+V TEK
Sbjct: 22  KDVTEEKSVIPPPP-EHKTDDSKALVLVEKVPEVADP---KTTEGSVNRDAVLAKVATEK 77

Query: 95  RISLIRAWEESEKSQAENK 113
           R+SL++AWEESEKS+AENK
Sbjct: 78  RLSLVKAWEESEKSKAENK 96

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136994|ref|XP_002322467.1| predicted protein [Populus trichocarpa] gi|222869463|gb|EEF06594.1| predicted protein [Populus trichocarpa]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 63/79 (79%), Gaps = 5/79 (6%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDVA++KTVIP   AE+K EES+A+AV++ +  AE        EGSVNRDAVLARV TEK
Sbjct: 37  KDVAEEKTVIPPSVAEEKVEESEAVAVIETSESAEEK-----KEGSVNRDAVLARVATEK 91

Query: 95  RISLIRAWEESEKSQAENK 113
           RISL++AWEESEKS+AENK
Sbjct: 92  RISLVKAWEESEKSKAENK 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348650|ref|XP_003638357.1| Remorin [Medicago truncatula] gi|355504292|gb|AES85495.1| Remorin [Medicago truncatula] gi|388496228|gb|AFK36180.1| unknown [Medicago truncatula]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 79/118 (66%), Gaps = 10/118 (8%)

Query: 3   EEEPKKLETETPTEPPPPPSTEPAA--PAAAEPPKDVADDKTVIPSPPAEDKPEE----S 56
           +E+PKK+E+E+ + PPPPP++      P    P KDVA++K+VIP       P      S
Sbjct: 4   QEQPKKIESESTSNPPPPPASTETTTTPLPEAPKKDVAEEKSVIPQDNNPPPPPPVVDDS 63

Query: 57  KALAVVDKAPEAEPPAGEKSTEG-SVNRDAVLARVETEKRISLIRAWEESEKSQAENK 113
           KAL +V K  EA   A EK  EG S++RDAVL RV TEKR+SLI+AWEESEKS+AENK
Sbjct: 64  KALVIVQKTDEA---AEEKPKEGGSIDRDAVLTRVATEKRLSLIKAWEESEKSKAENK 118

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.459	0.368	0.662	5.7e-20
TAIR|locus:2172793	202	AT5G23750 "AT5G23750" [Arabido	0.408	0.321	0.657	1.8e-16
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.465	0.349	0.538	3.8e-14
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.440	0.368	0.538	4.9e-14
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.408	0.371	0.571	4.9e-14

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 55/83 (66%), Positives = 68/83 (81%)

Query:    37 VADDKTVI-PS--PPAEDK--PEESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARV 90
             VAD+K ++ P+  PPAE+K  P++SKAL VV+ KAPE   PA EK  EGS++RDAVLARV
Sbjct:    29 VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPE---PADEKK-EGSIDRDAVLARV 84

Query:    91 ETEKRISLIRAWEESEKSQAENK 113
              TEKR+SLI+AWEESEKS+AENK
Sbjct:    85 ATEKRVSLIKAWEESEKSKAENK 107

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2172793 AT5G23750 "AT5G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 48/73 (65%), Positives = 57/73 (78%)

Query:    43 VIPSP-PAEDKPEESKALA-VVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
             V+PSP PAE+K E+SKA+  VV K  E E    E+  EGSVNRDAVLARVETEKR+SLI+
Sbjct:    45 VLPSPAPAEEKQEDSKAIVPVVPK--EVE----EEKKEGSVNRDAVLARVETEKRMSLIK 98

Query:   101 AWEESEKSQAENK 113
             AWEE+EK + ENK
Sbjct:    99 AWEEAEKCKVENK 111

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 42/78 (53%), Positives = 54/78 (69%)

Query:    36 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKR 95
             DVA++K  I +PP E   ++SKAL VV+K P  E PA  K    S++RD  LA +  EKR
Sbjct:    48 DVAEEK--IQNPPPEQIFDDSKALTVVEK-P-VEEPAPAKPASASLDRDVKLADLSKEKR 103

Query:    96 ISLIRAWEESEKSQAENK 113
             +S +RAWEESEKS+AENK
Sbjct:   104 LSFVRAWEESEKSKAENK 121

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 42/78 (53%), Positives = 56/78 (71%)

Query:    36 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKR 95
             +VAD+K  I +PP    P ESKALAVV+K  E   P  +K++ GS +RD +LA +E EK+
Sbjct:    30 EVADEK--IHNPP----PVESKALAVVEKPIEEHTP--KKASSGSADRDVILADLEKEKK 81

Query:    96 ISLIRAWEESEKSQAENK 113
              S I+AWEESEKS+AEN+
Sbjct:    82 TSFIKAWEESEKSKAENR 99

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 40/70 (57%), Positives = 53/70 (75%)

Query:    45 PSPPA-EDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
             PSPP+ E+K ++SKA+ +V  A E   P  +K   GSV+RDAVL R+E +KRISLI+AWE
Sbjct:    19 PSPPSKEEKSDDSKAIVLVVAAKE---PTEDKKV-GSVHRDAVLVRLEQDKRISLIKAWE 74

Query:   104 ESEKSQAENK 113
             E+EKS+ ENK
Sbjct:    75 EAEKSKVENK 84


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.128   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      159       106   0.00091  102 3  11 23  0.36    31
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  116 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.88u 0.15s 15.03t   Elapsed:  00:00:01
  Total cpu time:  14.88u 0.15s 15.03t   Elapsed:  00:00:01
  Start:  Sat May 11 03:18:17 2013   End:  Sat May 11 03:18:18 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
pfam03766	57	pfam03766, Remorin_N, Remorin, N-terminal region	9e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	4e-04
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.003
PRK10905	328	PRK10905, PRK10905, cell division protein DamX; Va	0.004
TIGR02102	1111	TIGR02102, pullulan_Gpos, pullulanase, extracellul	0.004

>gnl|CDD|112573 pfam03766, Remorin_N, Remorin, N-terminal region

 Score = 41.1 bits (96), Expect = 9e-06
 Identities = 28/57 (49%), Positives = 41/57 (71%), Gaps = 3/57 (5%)

Query: 34 PKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARV 90
            +VA ++   P PPA++KP++SKALAVV+    AE PA +KS+ GS++RD VLA +
Sbjct: 4  ADEVAIEEIANP-PPAKEKPDDSKALAVVE--KPAEEPAPKKSSSGSIDRDVVLADL 57

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 57

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPA-----AAEPPKDVADDKTVIPSPPAEDKPEES 56
           A        T  P+  P   +     P       A PP               E  P+ +
Sbjct: 373 AAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLT 432

Query: 57  KALAVVDKAPEAEPPAGEKSTEGSVNRD-AVLARVE 91
           +A   VD+ P+  PPA  K  E ++  D  VL ++E
Sbjct: 433 RAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQLE 468

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 18/82 (21%), Positives = 21/82 (25%), Gaps = 4/82 (4%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAV 61
                             P +  PAAPA A P           P  PA      +   A 
Sbjct: 44  PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA----APPKPAAAAAAAAAPAAP 99

Query: 62  VDKAPEAEPPAGEKSTEGSVNR 83
              A  A P A     E +  R
Sbjct: 100 PAAAAAAAPAAAAVEDEVTPLR 121

Length = 1228

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 22/92 (23%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 9   LETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEA 68
            E +T   PP       AA  A +   +        P PPA  KP    A       P  
Sbjct: 116 SEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAA-----AKPPE 170

Query: 69  EPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
             PA +         D      ET   +S +R
Sbjct: 171 PAPAAKPPPTPVARAD----PRETRVPMSRMR 198

Length = 418

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 4   EEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEE--SKALAV 61
            E K  E  TP EP   P T PA P  A  P   A       +P A  KP     +  A 
Sbjct: 107 TENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSPRPAAK 166

Query: 62  VDKAPEAEPPA 72
               P     A
Sbjct: 167 AAPKPTETITA 177

Length = 209

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 1/71 (1%)

Query: 9   LETETPTE-PPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPE 67
                P     P  +   AA AA+ P    A      P+P        +        A  
Sbjct: 33  FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAA 92

Query: 68  AEPPAGEKSTE 78
           A  PA   +  
Sbjct: 93  AAAPAAPPAAA 103

Length = 1228

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 4   EEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVD 63
           + P+             P    A P    PP+     +T  P  P    P  ++  A V 
Sbjct: 113 QVPRSTVQIQQQAQQQQPPATTAQPQPVTPPR-----QTTAPVQPQTPAPVRTQPAAPVT 167

Query: 64  KAPEAEPPAGEKSTE 78
           +A EA     EK  E
Sbjct: 168 QAVEAPKVEAEKEKE 182

Length = 256

>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 5   EPKKLETETPTEPPPPPS----TEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALA 60
           EPKK +    TEP P       TEPAAP A    K  A   T  P   A   P ++ + A
Sbjct: 164 EPKKPQATAKTEPKPVAQTPKRTEPAAPVA--STKAPAATSTPAPKETATTAPVQTASPA 221

Query: 61  VVDKAPEAEPPAGEKST 77
                  A P AG K+ 
Sbjct: 222 ----QTTATPAAGGKTA 234

Length = 328

>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 10   ETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAE 69
              E P + PPPP  EP AP    P +D    K      P ++K          D      
Sbjct: 1006 GIEAPEKTPPPPEHEPQAP--KPPTQDPDGSKPKDKVDPKDNKD--PLTPPGSDDENGET 1061

Query: 70   PPAGEKSTEGSVNRDAVL 87
            P   E+  E   ++ A L
Sbjct: 1062 PKGNEEKKEEQPDKGANL 1079

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PMID:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PMID:8798645). Length = 1111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PF03766	57	Remorin_N: Remorin, N-terminal region ; InterPro:	99.66
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	98.35
PF08078	37	PsaX: PsaX family; InterPro: IPR012986 This family	91.73

>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides

Probab=99.66  E-value=6.1e-17  Score=112.19  Aligned_cols=53  Identities=62%  Similarity=0.965  Sum_probs=46.5

Q ss_pred             CCccccCCCCCCCCCCCCCccCcceeeeecCCCCCCCCCCCCCCCchhHHHHHHHH
Q 031471           35 KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARV   90 (159)
Q Consensus        35 kdVaEEKaviP~P~~e~~~ddSKAlvvVek~~~~~~~~~~k~~~gs~dRDa~LArV   90 (159)
                      +|++++|+++|||. +++.||||||++|+|..+.  ++.+|+++||+|||++||||
T Consensus         5 ~dva~ek~~~PpP~-~~k~ddSKAl~vVek~~~e--pa~eK~s~GS~dRDa~LA~v   57 (57)
T PF03766_consen    5 KDVAEEKSVIPPPA-EEKPDDSKALVVVEKKVPE--PAEEKPSEGSIDRDAALARV   57 (57)
T ss_pred             hhhccccCCCCCCC-CCCCCccceEEEeeccCCC--ccccccCCCcchhhhhhhcC
Confidence            89999999988775 6788999999999986332  88899999999999999986

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=98.35  E-value=3.3e-07  Score=69.32  Aligned_cols=37  Identities=22%  Similarity=0.198  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHhhhhhhhHhHHHhhhhhhhhhhhcCC
Q 031471           92 TEKRISLIRAWEESEKSQAENKLRASFLEFFFFFFGL  128 (159)
Q Consensus        92 ~EKrlSlIKAWEEsEKaKaeNKa~Kkls~I~sWE~~~  128 (159)
                      .+++.+.|.|||++|++|+.||++++++.|++|||..
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~q   38 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQ   38 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4678999999999999999999999999999999864

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits

Probab=91.73  E-value=0.16  Score=33.25  Aligned_cols=18  Identities=61%  Similarity=0.827  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 031471          139 TLALLLLSINFLVLNYIC  156 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~  156 (159)
                      .-++|||.|||||--|..
T Consensus        17 ~Wa~llLaINflVAayYF   34 (37)
T PF08078_consen   17 GWALLLLAINFLVAAYYF   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            357899999999988753

PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	8e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-04

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 47.6 bits (112), Expect = 4e-07
 Identities = 17/79 (21%), Positives = 24/79 (30%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAV 61
             E  K+ E E   E     +   A  +    P       T      +  KPEE  +  V
Sbjct: 45  TNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVV 104

Query: 62  VDKAPEAEPPAGEKSTEGS 80
            +       P  +K TE  
Sbjct: 105 AETPSAEAKPKSDKETEAK 123

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 5/117 (4%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKT---VIPSPPAEDKPEESKA 58
           A  E     TE  +      + E       E  ++   +K       S  A     E+  
Sbjct: 25  AVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAAT 84

Query: 59  LAV--VDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENK 113
                   A + E  A E   E         +  ETE +       +ES+ +   NK
Sbjct: 85  TETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANK 141

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 2/116 (1%)

Query: 4   EEPKKLETETPTEPPPPPSTEPAAPAAAEPPK--DVADDKTVIPSPPAEDKPEESKALAV 61
           EE    E            +E +   A +  +     ++K       A      S A   
Sbjct: 22  EETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNE 81

Query: 62  VDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKLRAS 117
                 AE  +  K  E +    A     E + +       +    +Q +    A+
Sbjct: 82  AATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 40.7 bits (94), Expect = 8e-05
 Identities = 10/77 (12%), Positives = 15/77 (19%), Gaps = 3/77 (3%)

Query: 2  AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAV 61
           EE       E         S E          ++  +         AE     S+  + 
Sbjct: 21 GEETAV---PENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASP 77

Query: 62 VDKAPEAEPPAGEKSTE 78
                    A   S  
Sbjct: 78 ASNEAATTETAEAASAA 94

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 3/142 (2%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVAD--DKTVIPSPPAEDKPEESKAL 59
            E E  +       E     S E A+PA+ E              P   A +   E+ + 
Sbjct: 52  NEGEHARENKLEKAEGVATAS-ETASPASNEAATTETAEAASAAKPEEKASEVVAETPSA 110

Query: 60  AVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKLRASFL 119
               K+ +      E + +G  ++ A  A    ++    +    E      E K  +   
Sbjct: 111 EAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEE 170

Query: 120 EFFFFFFGLNCYYYFVSCVTLA 141
              +              V LA
Sbjct: 171 LLKWEPGAREDDAINRGSVVLA 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
1jb0_X	35	Photosystem I subunit PSAX; membrane protein, mult	93.52

>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*

Probab=93.52  E-value=0.041  Score=34.64  Aligned_cols=18  Identities=56%  Similarity=0.766  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 031471          139 TLALLLLSINFLVLNYIC  156 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~  156 (159)
                      .-+||||+|||||--|..
T Consensus        14 ~WalllLaINflVAayYF   31 (35)
T 1jb0_X           14 FWAVLLLAINFLVAAYYF   31 (35)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            357799999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1jb0x_	29	Subunit PsaX of photosystem I reaction centre {Syn	93.12

>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Subunit PsaX of photosystem I reaction centre
family: Subunit PsaX of photosystem I reaction centre
domain: Subunit PsaX of photosystem I reaction centre
species: Synechococcus elongatus [TaxId: 32046]

Probab=93.12  E-value=0.025  Score=32.74  Aligned_cols=18  Identities=56%  Similarity=0.766  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 031471          139 TLALLLLSINFLVLNYIC  156 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~  156 (159)
                      ..+||||.|||||..|..
T Consensus         8 ~wa~lllainflvaayyf   25 (29)
T d1jb0x_           8 FWAVLLLAINFLVAAYYF   25 (29)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            468999999999988753