Citrus Sinensis ID: 031507

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MEESVYVNGNHHHSFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEESGIPLFS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEEcccccccccHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccEEEEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEccccccccccccccccEEEEccccccccccccccccccccccHHHHccccEEEEEEEEccccccccccccEccccccccccHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccEEEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
meesvyvngnhhhsfsssisqrhvsyscgscgyelnlsscnRNISsiglkygksmkRGIIAFvdidesrftqvdelqciphfsknswgiLRHRTKLLCrkcgnpigiaytdktsayspksngsdspsvpgasgrrkydvriralqpssseesgiplfs
Flexible Loop (DISEMBL)
MEESVYVNGNHHHSFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIglkygksmKRGIIAFVDIDESRFTQVDELQCIphfsknswgilRHRTKLLCRKCGNPIGIAYTdktsayspksngsdspsvpgasgrrkyDVRIRalqpssseesgiplfs
Low Complexity Region (SEG)
MEESVYVNGNHHHSFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEESGIPLFS
Disordered region (IsUnstruct)
*********************RHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTD***********************************************
Disordered Region (DISOPRED)
**********************HVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKT***********************YDVRIRALQPSSSEE*GIPLF*
Disordered Region (DISEMBL)
*************************YSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTS********************RKYDVRIRAL**************
Disordered Region (DISPRO)
****************SSISQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDK*********************RRKYDVRIRALQPS*********F*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEESVYVNGNHHHSFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEESGIPLFS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q9STN5	164	Uncharacterized protein A	yes	no	0.803	0.774	0.648	1e-42

>sp|Q9STN5|Y4833_ARATH Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana GN=At4g08330 PE=1 SV=1

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/128 (64%), Positives = 98/128 (76%), Gaps = 1/128 (0%)

Query: 22  RHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPH 81
           RHV+YSCGSCGYELNLSS NR  S+IG KYGKSMK GII+F +IDE RF+QVDE QC+PH
Sbjct: 34  RHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEGRFSQVDEFQCMPH 93

Query: 82  FSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRI 141
           FS+ SWG+ RHRTKLLCRKC N IG A  +K   Y+  +  SD P+ P      KYD+RI
Sbjct: 94  FSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSD-PTSPRIGSVTKYDIRI 152

Query: 142 RALQPSSS 149
           R+LQPSS+
Sbjct: 153 RSLQPSSA 160

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
356552677	158	PREDICTED: uncharacterized protein At4g0	1.0	1.0	0.620	8e-49
356549224	158	PREDICTED: uncharacterized protein At4g0	1.0	1.0	0.607	1e-48
224063084	159	predicted protein [Populus trichocarpa]	0.974	0.968	0.696	3e-48
255647519	158	unknown [Glycine max]	1.0	1.0	0.613	4e-48
255640660	158	unknown [Glycine max]	1.0	1.0	0.601	7e-48
118484948	164	unknown [Populus trichocarpa]	0.974	0.939	0.677	2e-47
255545404	191	conserved hypothetical protein [Ricinus	0.955	0.790	0.574	3e-46
449500695	168	PREDICTED: uncharacterized protein At4g0	0.829	0.779	0.689	8e-45
224084884	121	predicted protein [Populus trichocarpa]	0.765	1.0	0.719	1e-42
188509925	218	predicted protein [Gossypioides kirkii]	0.810	0.587	0.671	2e-42

>gi|356552677|ref|XP_003544689.1| PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Glycine max]

 Score =  197 bits (502), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 98/158 (62%), Positives = 118/158 (74%)

Query: 1   MEESVYVNGNHHHSFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGII 60
           M++S +  G H +   S  SQR V YSCG+CGYELNLSS NRN +SIG KYGKS+KRGII
Sbjct: 1   MDDSAFKRGGHFNRTYSCSSQRDVCYSCGTCGYELNLSSSNRNTASIGSKYGKSIKRGII 60

Query: 61  AFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKS 120
           +F  ID SRFTQVDE+QC+PHF K+SWG+ R RTKLLCRKCGN IG AY   TS++   S
Sbjct: 61  SFFSIDLSRFTQVDEIQCVPHFDKHSWGLFRRRTKLLCRKCGNHIGNAYNGYTSSFPLVS 120

Query: 121 NGSDSPSVPGASGRRKYDVRIRALQPSSSEESGIPLFS 158
           +G++S          KYD+RI ALQPSSSEESGIP+F+
Sbjct: 121 DGAESSPSSKVVSHTKYDIRICALQPSSSEESGIPVFA 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549224|ref|XP_003542997.1| PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Glycine max]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 118/158 (74%)

Query: 1   MEESVYVNGNHHHSFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGII 60
           M++S +    H +   S  SQR V YSCG+CGYELNLSS NRN +SIG KYGKS+KRGII
Sbjct: 1   MDDSAFKRDGHFNRTYSCSSQRDVRYSCGTCGYELNLSSSNRNTASIGSKYGKSIKRGII 60

Query: 61  AFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKS 120
           +F  ID SRFTQVDE+QC+PHF K+SWG+ R RTKLLCRKCGN IG AY   TS++   +
Sbjct: 61  SFFSIDLSRFTQVDEIQCVPHFDKHSWGLFRRRTKLLCRKCGNHIGNAYNGYTSSFPLVT 120

Query: 121 NGSDSPSVPGASGRRKYDVRIRALQPSSSEESGIPLFS 158
           +G++S          KYD+RIRALQPSSSEESGIP+++
Sbjct: 121 DGAESSPSSKVVSHTKYDIRIRALQPSSSEESGIPVYA 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063084|ref|XP_002300988.1| predicted protein [Populus trichocarpa] gi|222842714|gb|EEE80261.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 108/155 (69%), Positives = 120/155 (77%), Gaps = 1/155 (0%)

Query: 3   ESVYVNGN-HHHSFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIA 61
           +  Y+NGN HH   SSS SQRHVSYSCG CGYELNLSS NRN SSIG KYGKS+KRGII+
Sbjct: 3   KGAYLNGNPHHSFSSSSASQRHVSYSCGICGYELNLSSSNRNTSSIGSKYGKSIKRGIIS 62

Query: 62  FVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSN 121
           F  IDESRFTQVDE QCIP FS+NSWG+   RT LLCRKCGN IGIAY DK SAY   ++
Sbjct: 63  FFFIDESRFTQVDEFQCIPFFSRNSWGLFHRRTALLCRKCGNNIGIAYDDKASAYPLVAD 122

Query: 122 GSDSPSVPGASGRRKYDVRIRALQPSSSEESGIPL 156
           GSDS SV   S  RKYDV+IRALQPSS ++   P+
Sbjct: 123 GSDSSSVSEVSKHRKYDVKIRALQPSSVDQFSTPI 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647519|gb|ACU24223.1| unknown [Glycine max]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 117/158 (74%)

Query: 1   MEESVYVNGNHHHSFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGII 60
           M++S +  G H +   S  SQR V YSCG+CGYELNL S NRN +SIG KYGKS+KRGII
Sbjct: 1   MDDSAFKRGGHFNRTYSCSSQRDVCYSCGTCGYELNLFSSNRNTASIGSKYGKSIKRGII 60

Query: 61  AFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKS 120
           +F  ID SRFTQVDE+QC+PHF K+SWG+ R RTKLLCRKCGN IG AY   TS++   S
Sbjct: 61  SFFSIDLSRFTQVDEIQCVPHFDKHSWGLFRRRTKLLCRKCGNHIGNAYNGYTSSFPLVS 120

Query: 121 NGSDSPSVPGASGRRKYDVRIRALQPSSSEESGIPLFS 158
           +G++S          KYD+RI ALQPSSSEESGIP+F+
Sbjct: 121 DGAESSPSSKVVSHTKYDIRICALQPSSSEESGIPVFA 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640660|gb|ACU20615.1| unknown [Glycine max]

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 118/158 (74%)

Query: 1   MEESVYVNGNHHHSFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGII 60
           M++S +    H +   S  SQR V YSCG+CGYELNLSS NRN +SIG KYGKS+KRGII
Sbjct: 1   MDDSAFKRDGHFNRTYSCSSQRDVRYSCGTCGYELNLSSSNRNTASIGSKYGKSIKRGII 60

Query: 61  AFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKS 120
           +F  ID SRFTQVDE+QC+PHF K+SWG+ R RTKLLCRKCG+ IG AY   TS++   +
Sbjct: 61  SFFSIDLSRFTQVDEIQCVPHFDKHSWGLFRRRTKLLCRKCGSHIGNAYNGYTSSFPLVT 120

Query: 121 NGSDSPSVPGASGRRKYDVRIRALQPSSSEESGIPLFS 158
           +G++S          KYD+RIRALQPSSSEESGIP+++
Sbjct: 121 DGAESSPSSKVVSHTKYDIRIRALQPSSSEESGIPVYA 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484948|gb|ABK94339.1| unknown [Populus trichocarpa]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/155 (67%), Positives = 119/155 (76%), Gaps = 1/155 (0%)

Query: 5   VYVNGNHHHSFSSSISQRHVS-YSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFV 63
            Y+NGNHHHSFSSS +      YSCG CGYELNLSS NRN S+IG KYGKS+KRG I+F 
Sbjct: 10  AYLNGNHHHSFSSSSASHRHVSYSCGICGYELNLSSSNRNTSTIGSKYGKSIKRGKISFF 69

Query: 64  DIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGS 123
            IDESRFTQVDE QC P FSKNS G+ R RT LLCRKCGN IGIAY D+ SAY   ++GS
Sbjct: 70  FIDESRFTQVDEFQCFPFFSKNSLGLFRQRTALLCRKCGNHIGIAYADEASAYPLVADGS 129

Query: 124 DSPSVPGASGRRKYDVRIRALQPSSSEESGIPLFS 158
           DS SV     RRKYDV+IRALQPSS+E+  IPL++
Sbjct: 130 DSSSVSEVFKRRKYDVKIRALQPSSAEQFSIPLYT 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545404|ref|XP_002513762.1| conserved hypothetical protein [Ricinus communis] gi|223546848|gb|EEF48345.1| conserved hypothetical protein [Ricinus communis]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/181 (57%), Positives = 118/181 (65%), Gaps = 30/181 (16%)

Query: 6   YVNGNHHHSFSS-SISQRH----------------------------VSYSCGSCGYELN 36
           Y+NGNH HSFSS S S RH                            V   CG+CGYELN
Sbjct: 11  YLNGNHLHSFSSVSASIRHICDGELDIHKLRNFNVVICSCGAQNELLVPVFCGTCGYELN 70

Query: 37  LSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKL 96
           LSS NRN S+IG KYGKS+KRGII+F DIDESRFTQ +E QCIP+FSK+SWG  R RTKL
Sbjct: 71  LSSSNRNTSTIGSKYGKSIKRGIISFFDIDESRFTQAEEFQCIPYFSKSSWGFFRRRTKL 130

Query: 97  LCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEESGIPL 156
           LCRKCGN IGIAY D+TSAY P  +     S    S RRKYD++IRALQPSS +  G PL
Sbjct: 131 LCRKCGNYIGIAYEDETSAY-PLVSDGSDSSSVNESKRRKYDIKIRALQPSSVDRCGTPL 189

Query: 157 F 157
           +
Sbjct: 190 Y 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500695|ref|XP_004161170.1| PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Cucumis sativus]

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 91/132 (68%), Positives = 109/132 (82%), Gaps = 1/132 (0%)

Query: 21  QRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIP 80
           +R V YSCG+CGYELNLSS NRN S+IG KYGKS+KRGII+F++IDESRFTQVDELQC+P
Sbjct: 31  RRDVYYSCGACGYELNLSSINRNTSTIGSKYGKSIKRGIISFLNIDESRFTQVDELQCVP 90

Query: 81  HFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGR-RKYDV 139
           HFSKNSWG+ R R KLLCRKCGN IG A+++ T++    S+GSDS S+P    R  KY+V
Sbjct: 91  HFSKNSWGLFRRRIKLLCRKCGNYIGNAHSNHTASSPLVSDGSDSSSLPNEVSRCMKYEV 150

Query: 140 RIRALQPSSSEE 151
           +IRALQPSSS E
Sbjct: 151 KIRALQPSSSNE 162

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084884|ref|XP_002307435.1| predicted protein [Populus trichocarpa] gi|222856884|gb|EEE94431.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 95/121 (78%)

Query: 28  CGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSW 87
           CG CGYELNLSS NRN S+IG KYGKS+KRG I+F  IDESRFTQVDE QC P FSKNS 
Sbjct: 1   CGICGYELNLSSSNRNTSTIGSKYGKSIKRGKISFFFIDESRFTQVDEFQCFPFFSKNSL 60

Query: 88  GILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPS 147
           G+ R RT LLCRKCGN IGIAY D+ SAY   ++GSDS SV     RRKYDV+IRALQPS
Sbjct: 61  GLFRQRTALLCRKCGNHIGIAYADEASAYPLVADGSDSSSVSEVFKRRKYDVKIRALQPS 120

Query: 148 S 148
           S
Sbjct: 121 S 121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509925|gb|ACD56614.1| predicted protein [Gossypioides kirkii]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 103/128 (80%)

Query: 24  VSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFS 83
           +S SCGSCGYELNLSS +RN ++IG KYGKS+KRGII+F  IDESRFTQVDE QC+P+FS
Sbjct: 6   LSCSCGSCGYELNLSSSSRNTATIGSKYGKSIKRGIISFFSIDESRFTQVDEFQCVPYFS 65

Query: 84  KNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRA 143
           ++SWG+ RHRTKLLCRKCGN IG AY +KTS Y    + S+S      S  RKY+VRIRA
Sbjct: 66  RHSWGLFRHRTKLLCRKCGNHIGNAYDEKTSGYPLVLDKSNSSPSNEVSSHRKYNVRIRA 125

Query: 144 LQPSSSEE 151
           LQPSS++E
Sbjct: 126 LQPSSAQE 133

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2137455	164	AT4G08330 "AT4G08330" [Arabido	0.854	0.823	0.647	1.2e-42
TAIR|locus:504955974	127	AT2G17705 "AT2G17705" [Arabido	0.740	0.921	0.317	4.7e-09

TAIR|locus:2137455 AT4G08330 "AT4G08330" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 88/136 (64%), Positives = 103/136 (75%)

Query:    14 SFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQV 73
             S SSS S RHV+YSCGSCGYELNLSS NR  S+IG KYGKSMK GII+F +IDE RF+QV
Sbjct:    26 SSSSSSSMRHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEGRFSQV 85

Query:    74 DELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASG 133
             DE QC+PHFS+ SWG+ RHRTKLLCRKC N IG A  +K   Y+  +  SD P+ P    
Sbjct:    86 DEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSD-PTSPRIGS 144

Query:   134 RRKYDVRIRALQPSSS 149
               KYD+RIR+LQPSS+
Sbjct:   145 VTKYDIRIRSLQPSSA 160

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504955974 AT2G17705 "AT2G17705" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 40/126 (31%), Positives = 58/126 (46%)

Query:    26 YSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSK- 84
             Y+C  CG +LNL   N N       Y ++  +G ++F  +D  +F    E + +P F   
Sbjct:     6 YTCKECGSDLNL---NPNDLFPPDFYFEAGNKGTLSFAAVDAEKFRFEKEDKIMPFFETL 62

Query:    85 NSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPS--VPGASGRRKYDVRIR 142
             N WGI R RTK+ C  C + IG  Y D              PS  +P A    +Y  + +
Sbjct:    63 NYWGIQRKRTKIKCTSCNHLIGYIYDDGPPLTGGIGQYGFGPSQVIPRAP---RYRFKTK 119

Query:   143 ALQPSS 148
             A+Q SS
Sbjct:   120 AVQVSS 125


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      158       158   0.00085  106 3  11 22  0.39    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  152 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.40u 0.08s 16.48t   Elapsed:  00:00:01
  Total cpu time:  16.40u 0.08s 16.48t   Elapsed:  00:00:01
  Start:  Sat May 11 04:50:03 2013   End:  Sat May 11 04:50:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STN5	Y4833_ARATH	No assigned EC number	0.6484	0.8037	0.7743	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
COG0229	140	Conserved domain frequently associated with peptid	100.0
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	100.0
PRK00222	142	methionine sulfoxide reductase B; Provisional	100.0
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	100.0
PRK05508	119	methionine sulfoxide reductase B; Provisional	100.0
KOG0856	146	consensus Predicted pilin-like transcription facto	100.0
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	100.0
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	93.44

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.1e-43  Score=275.68  Aligned_cols=101  Identities=25%  Similarity=0.401  Sum_probs=84.1

Q ss_pred             cccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCCCC
Q 031507           12 HHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNSWG   88 (158)
Q Consensus        12 ~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s~g   88 (158)
                      -++|++.+  .+++|+|+|++||+||| +|++|||||||          ||||++ |++..|++.+         |.|+|
T Consensus        27 E~pft~~y~~~~~~GiY~c~~cg~pLF-~S~~KfdSgcG----------WPSF~~pi~~~~I~~~~---------D~S~g   86 (140)
T COG0229          27 ERPFTGEYLDNKEKGIYVCIVCGEPLF-SSEDKFDSGCG----------WPSFTKPISPDAITYKE---------DRSHG   86 (140)
T ss_pred             CCCCCChhhcccCCceEEeecCCCccc-cccccccCCCC----------CccccccCCcccceEee---------ccCCC
Confidence            46777777  88999999999999997 89999999995          555554 3344444443         46666


Q ss_pred             CceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCC-ceeeeeeceeeecCCCC
Q 031507           89 ILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGR-RKYDVRIRALQPSSSEE  151 (158)
Q Consensus        89 ~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg-~RYcIns~AL~~~~~~~  151 (158)
                        |.||||+|++|++||||||+|||+                 |+| +||||||+||+|++.++
T Consensus        87 --M~RtEVrc~~c~sHLGHVF~DGP~-----------------~tgglRYCINSasL~Fip~~~  131 (140)
T COG0229          87 --MVRTEVRCANCDSHLGHVFPDGPP-----------------PTGGLRYCINSASLRFIPKEE  131 (140)
T ss_pred             --cEEEEEEecCCCCccccccCCCCC-----------------CCCCeeEeecchheeecchhh
Confidence              899999999999999999999998                 777 99999999999999743

>TIGR00357 methionine-R-sulfoxide reductase

Probab=100.00  E-value=2.4e-42  Score=269.52  Aligned_cols=101  Identities=26%  Similarity=0.351  Sum_probs=83.5

Q ss_pred             cccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCCCC
Q 031507           12 HHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNSWG   88 (158)
Q Consensus        12 ~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s~g   88 (158)
                      -++|++.+  .+++|+|+|++||+||| +|++||+||||          ||||++ +++.+|++..         |.++|
T Consensus        25 E~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KfdSg~G----------WPSF~~~i~~~~V~~~~---------D~s~g   84 (134)
T TIGR00357        25 EPPFTNEYWDNKEEGIYVDITCGEPLF-SSEDKFDSGCG----------WPSFYKPISEEVVAYER---------DESHG   84 (134)
T ss_pred             CCCCCCCCCCCCCCeEEEccCCCCccc-cccchhcCCCC----------CcCcCcccCCCceEEee---------cCCCC
Confidence            35677776  78999999999999997 89999999995          555554 3344444443         35555


Q ss_pred             CceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507           89 ILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE  151 (158)
Q Consensus        89 ~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~  151 (158)
                        |+||||+|++||+||||||+|||+                 |||+||||||+||.|++.++
T Consensus        85 --m~RtEv~C~~Cg~HLGHVF~DGP~-----------------ptg~RyCINs~sL~F~p~~~  128 (134)
T TIGR00357        85 --MIRTEVRCRNCDAHLGHVFDDGPE-----------------PTGLRYCINSAALKFIPLEE  128 (134)
T ss_pred             --cEEEEEEecCCCCccCcccCCCCC-----------------CCCceEeecceeEecccchh
Confidence              899999999999999999999997                 99999999999999998643

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=1.1e-41  Score=268.01  Aligned_cols=102  Identities=24%  Similarity=0.402  Sum_probs=84.3

Q ss_pred             ccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCCC
Q 031507           11 HHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNSW   87 (158)
Q Consensus        11 ~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s~   87 (158)
                      --++|++.+  .+++|+|+|++||+||| +|.+||+||||          ||||++ +++++|++..         |.++
T Consensus        27 TE~pftg~~~~~~~~G~Y~C~~Cg~pLF-~S~~Kf~Sg~G----------WPSF~~~i~~~~V~~~~---------D~s~   86 (142)
T PRK00222         27 TERPFTGEYLDNKEKGIYVCIVCGEPLF-SSDTKFDSGCG----------WPSFTKPIDEEAIRELR---------DTSH   86 (142)
T ss_pred             CCCCCCCCCCCCCCCeEEEecCCCchhc-CCcccccCCCC----------CcCcCcccCCCceEEee---------ccCC
Confidence            346677776  78999999999999997 99999999995          555554 3344455443         3455


Q ss_pred             CCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507           88 GILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE  151 (158)
Q Consensus        88 g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~  151 (158)
                      |  |.||||+|++||+||||||+|||+                 |||+||||||+||+|++.++
T Consensus        87 g--m~RtEv~C~~Cg~HLGHVF~DGP~-----------------ptg~RyCINs~sL~F~p~~~  131 (142)
T PRK00222         87 G--MVRTEVRCANCDSHLGHVFPDGPK-----------------PTGLRYCINSASLKFIPKDG  131 (142)
T ss_pred             C--ceEEEEEeCCCCCccCcccCCCCC-----------------CCCCEeeeceeeEEeeccch
Confidence            5  899999999999999999999997                 99999999999999999753

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=100.00  E-value=8.4e-41  Score=257.79  Aligned_cols=100  Identities=24%  Similarity=0.395  Sum_probs=81.1

Q ss_pred             ccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCCC
Q 031507           11 HHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNSW   87 (158)
Q Consensus        11 ~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s~   87 (158)
                      --++|++.+  .+++|+|+|++||+||| +|++||+|||          |||||++ +++.+|+...         |.++
T Consensus        21 TE~pfsg~y~~~~~~G~Y~C~~Cg~pLF-~S~~Kf~Sg~----------GWPSF~~~i~~~~v~~~~---------D~s~   80 (124)
T PF01641_consen   21 TERPFSGEYWDHKEEGIYVCAVCGTPLF-SSDTKFDSGC----------GWPSFWQPIPGDAVKERE---------DFSH   80 (124)
T ss_dssp             SSSTTSSGGCCTTSSEEEEETTTS-EEE-EGGGEETSSS----------SSSEESSCSSTTSEEEEE---------EECT
T ss_pred             CCCCCccCCcCCCCCEEEEcCCCCCccc-cCcccccCCc----------CCccccCcCChHHEEEec---------cccC
Confidence            345677776  78999999999999997 8999999999          6666666 4554555543         3455


Q ss_pred             CCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecC
Q 031507           88 GILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSS  148 (158)
Q Consensus        88 g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~  148 (158)
                      |  |+||||+|++||+||||||+|||+                .+||+||||||+||.|.+
T Consensus        81 g--~~R~Ev~C~~Cg~HLGHVF~DGp~----------------~~tg~RyCINS~sL~F~p  123 (124)
T PF01641_consen   81 G--MVRTEVRCARCGSHLGHVFDDGPP----------------PPTGLRYCINSASLKFIP  123 (124)
T ss_dssp             S--SEEEEEEETTTCCEEEEEESTSST----------------TCTSCEEEE-GGGEEEEE
T ss_pred             C--ceEEEEEecCCCCccccEeCCCCC----------------CCCCcEEEeeeeeEEEec
Confidence            5  899999999999999999999997                157999999999999975

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=5.1e-40  Score=252.19  Aligned_cols=98  Identities=20%  Similarity=0.351  Sum_probs=77.3

Q ss_pred             ccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEcccCccceeecccccccccccCCCC
Q 031507           11 HHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWG   88 (158)
Q Consensus        11 ~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~id~~~~~~~~e~~~~p~f~~~s~g   88 (158)
                      --++|++.+  .+++|+|+|++||+||| +|++|||||||          ||||++..+.+|+.+.         |.+  
T Consensus        17 TE~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KfdSg~G----------WPSF~~~i~~~v~~~~---------D~~--   74 (119)
T PRK05508         17 TEPPFSGEYNDFFEKGTYVCKQCGAPLY-RSEDKFKSGCG----------WPSFDDEIKGAVKRIP---------DAD--   74 (119)
T ss_pred             CCCCCCCCCcCcCCCeEEEecCCCCccc-cccccccCCCC----------CcccCcccccceEEEe---------cCC--
Confidence            345677766  78999999999999997 99999999995          5555542123333332         233  


Q ss_pred             CceeeeEEecCccCCCeeeecCCC-CCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCC
Q 031507           89 ILRHRTKLLCRKCGNPIGIAYTDK-TSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSS  149 (158)
Q Consensus        89 ~~m~RTEv~C~~Cg~HLGHVF~DG-P~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~  149 (158)
                        |+||||+|++||+||||||+|+ |+                 |||+||||||+||+|.+.
T Consensus        75 --~~RtEv~C~~C~~HLGHVF~d~gp~-----------------ptg~RyCINS~sL~F~p~  117 (119)
T PRK05508         75 --GRRTEIVCANCGGHLGHVFEGEGFT-----------------PKNTRHCVNSISLKFVPD  117 (119)
T ss_pred             --CcEEEEEeCCCCCccCcccCCCCCC-----------------CCCCEEeecceeEEeecC
Confidence              3699999999999999999954 54                 899999999999999874

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-37  Score=244.13  Aligned_cols=101  Identities=22%  Similarity=0.379  Sum_probs=83.1

Q ss_pred             cCCCCc--cccCeEEEccccCcccccCCCCccCCCCC-CCCCCcCCCCceeEEcccCccceeecccccccccccCCCCCc
Q 031507           14 SFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIG-LKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGIL   90 (158)
Q Consensus        14 ~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~G-psf~~~~~~G~~sF~~id~~~~~~~~e~~~~p~f~~~s~g~~   90 (158)
                      .+...+  .+++|+|+|++|++||| +|++||||||| |+|+++|..|.|          ++.+         |++++  
T Consensus        41 p~tGey~~~~e~GvY~C~~C~~pLy-kS~tKfdsgcGWPAF~e~i~~gaI----------~r~~---------d~s~~--   98 (146)
T KOG0856|consen   41 PGTGEYTKHFEEGVYVCAGCGTPLY-KSTTKFDSGCGWPAFFEAIGPGAI----------TRTP---------DNSRG--   98 (146)
T ss_pred             CCCcccccccCCceEEEeecCCccc-cccccccCCCCCchhhhccCCCce----------eecc---------ccCCC--
Confidence            344444  67999999999999997 99999999996 666666655554          3333         35555  


Q ss_pred             eeeeEEecCccCCCeeeecC-CCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCCC
Q 031507           91 RHRTKLLCRKCGNPIGIAYT-DKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEES  152 (158)
Q Consensus        91 m~RTEv~C~~Cg~HLGHVF~-DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~~  152 (158)
                      |.||||.|++||+||||||+ |||.                .||++||||||+||.|.+++.+
T Consensus        99 ~~R~Ev~Ca~C~~HLGHVF~~eG~~----------------~Pt~~R~CiNS~sL~F~~~~~s  145 (146)
T KOG0856|consen   99 GRRTEVSCATCGGHLGHVFKGEGPK----------------TPTDERHCINSVSLKFVPADSS  145 (146)
T ss_pred             CcceEEEEeecCCceeeeecCCCCC----------------CCCCceeEeeeeeeeeccCCCC
Confidence            68999999999999999998 9997                5999999999999999998764

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=100.00  E-value=6.8e-36  Score=272.74  Aligned_cols=103  Identities=23%  Similarity=0.264  Sum_probs=84.3

Q ss_pred             ccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCCC
Q 031507           11 HHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNSW   87 (158)
Q Consensus        11 ~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s~   87 (158)
                      --++|++.+  .+++|+|+|++||+||| +|.+||+||||          ||||++ ++++.+++..         |.++
T Consensus       402 tE~~f~~~~~~~~~~G~y~c~~c~~pLf-~s~~Kf~sg~G----------WPsF~~~i~~~~v~~~~---------d~s~  461 (521)
T PRK14018        402 TERAFSHEYDHLFKPGIYVDVVSGEPLF-SSADKYDSGCG----------WPSFTRPIDAKVVTEHD---------DFSY  461 (521)
T ss_pred             CCCCCCCCCcCCCCCEEEEecCCCCccc-cCcccccCCCC----------CcccCcccCcCceEEee---------ccCC
Confidence            346777776  88999999999999997 99999999995          555554 3444444433         4566


Q ss_pred             CCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507           88 GILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE  151 (158)
Q Consensus        88 g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~  151 (158)
                      |  |.||||+|++||+||||||+|||+                .|||+||||||+||+|.+.++
T Consensus       462 g--~~R~Ev~c~~c~~HLGHvf~dgp~----------------~~~g~RyCiNs~~l~f~~~~~  507 (521)
T PRK14018        462 N--MRRTEVRSRAADSHLGHVFPDGPR----------------DKGGLRYCINGASLKFIPLEQ  507 (521)
T ss_pred             C--ceEEEEEECCCCCcCCcccCCCCC----------------CCCCCEeeeceeEEEeecchh
Confidence            5  899999999999999999999996                279999999999999998753

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=100.00  E-value=1e-34  Score=248.90  Aligned_cols=98  Identities=22%  Similarity=0.438  Sum_probs=78.2

Q ss_pred             cccCCCCc--cccCeEEEccccCcccccCCCCccCCCCC-CCCCCcCCCCceeEEcccCccceeecccccccccccCCCC
Q 031507           12 HHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIG-LKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWG   88 (158)
Q Consensus        12 ~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~G-psf~~~~~~G~~sF~~id~~~~~~~~e~~~~p~f~~~s~g   88 (158)
                      -++|++.+  .+++|+|+|++||+||| +|++||+|||| |||+++|+.           .++...         |.+ |
T Consensus        21 E~pf~g~~~~~~~~G~y~c~~c~~~LF-~s~~Kf~sg~GWPsF~~~~~~-----------~~~~~~---------d~~-~   78 (283)
T PRK05550         21 ERPFSGEYYDHDEKGVYLCRRCGAPLF-RSEDKFNSGCGWPSFDDEIPG-----------AVKRLP---------DAD-G   78 (283)
T ss_pred             CCCCCCcCcCCCCCcEEEcCCCCchhc-CChhhccCCCCCcCcCcccCC-----------ccEEEE---------cCC-C
Confidence            45677766  78999999999999997 99999999995 444444432           222222         222 3


Q ss_pred             CceeeeEEecCccCCCeeeecC-CCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507           89 ILRHRTKLLCRKCGNPIGIAYT-DKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE  151 (158)
Q Consensus        89 ~~m~RTEv~C~~Cg~HLGHVF~-DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~  151 (158)
                        | ||||+|++||+||||||+ |||+                 |||+||||||+||+|.+.+.
T Consensus        79 --~-R~Ev~c~~c~~HLGHvF~ddgp~-----------------ptg~RyCiNs~sL~f~p~~~  122 (283)
T PRK05550         79 --R-RTEIVCANCGAHLGHVFEGEGLT-----------------PKNTRHCVNSASLDFVPAEE  122 (283)
T ss_pred             --c-eEEEEecCCCCccCcccCCCCCC-----------------CCCccccccccccccCcccc
Confidence              4 999999999999999998 7776                 89999999999999999755

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=93.44  E-value=0.11  Score=37.36  Aligned_cols=38  Identities=16%  Similarity=0.393  Sum_probs=28.3

Q ss_pred             eEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceee
Q 031507           94 TKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQ  145 (158)
Q Consensus        94 TEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~  145 (158)
                      ..|.|++|+.+||=.|..-|++              .....-+|++...+|.
T Consensus        56 ~~l~C~~C~~~lGwkY~~a~~~--------------~~~k~g~file~~~i~   93 (96)
T PF03226_consen   56 RDLFCSGCNTILGWKYESAPEE--------------QKYKEGKFILEKASIS   93 (96)
T ss_pred             EEeEcccCChhHCcEEEEcCHh--------------HhhhCCEEEEEhhHEE
Confidence            6799999999999999766541              1244558888877765

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	100.0
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	100.0
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	100.0
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	100.0
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	100.0
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	100.0
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	100.0
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	100.0
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	100.0
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	100.0

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=100.00  E-value=9.1e-43  Score=275.98  Aligned_cols=104  Identities=19%  Similarity=0.383  Sum_probs=86.1

Q ss_pred             CCccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccC
Q 031507            9 GNHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKN   85 (158)
Q Consensus         9 ~~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~   85 (158)
                      .---+.|++.+  .+++|+|+|++||+||| +|++||||||          |||||++ |++.+|++..         |.
T Consensus        32 ~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KFdSg~----------GWPSF~~pi~~~~v~~~~---------D~   91 (154)
T 3hcj_A           32 HGTEAPFCGVFLDNKLDGVYTCRLCGLPLF-RSNAKFDSGT----------GWPSFFAPYDPAHVREIR---------DT   91 (154)
T ss_dssp             CSSSCCCCCCCCSSCSSEEEEETTTCCEEE-EECTTCCCCT----------TSSTTEEESCGGGEEEEC---------CT
T ss_pred             cCCCCCCcCCCCCCCCCEEEEccCCCCccc-cCcccccCCC----------CCcccccccCccceEEee---------cC
Confidence            33446788877  88999999999999997 8999999999          5555555 3444444432         45


Q ss_pred             CCCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507           86 SWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE  151 (158)
Q Consensus        86 s~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~  151 (158)
                      ++|  |.||||+|++||+||||||+|||+                 |||+||||||+||+|++.++
T Consensus        92 s~g--m~RtEV~C~~Cg~HLGHVF~DGP~-----------------ptg~RyCiNS~sL~F~p~~~  138 (154)
T 3hcj_A           92 SYG--MIRTEIVCARCDSHLGHVFPDGPP-----------------PTGERHCLNSVSLAFTEDGQ  138 (154)
T ss_dssp             TTT--TSCEEEEETTTCCEEEEEESCSCT-----------------TTTCEEEECGGGEEEEETTS
T ss_pred             CCC--ceEEEEEeCCCCCccCCccCCCCC-----------------CCCCEeeeceeeEEeeeCCC
Confidence            666  799999999999999999999997                 99999999999999999754

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=100.00  E-value=2.4e-42  Score=271.12  Aligned_cols=101  Identities=20%  Similarity=0.233  Sum_probs=85.9

Q ss_pred             CCccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccC
Q 031507            9 GNHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKN   85 (158)
Q Consensus         9 ~~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~   85 (158)
                      .---++|++.+  .+++|+|+|++||+||| +|++||||||          |||||++ |++ +|++..         |.
T Consensus        24 ~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KfdSg~----------GWPSF~~pi~~-~v~~~~---------D~   82 (144)
T 3e0o_A           24 NGTEPPFQNEYWDHKEEGLYVDIVSGKPLF-TSKDKFDSQC----------GWPSFTKPIEE-EVEEKL---------DT   82 (144)
T ss_dssp             CCCCCTTCSTTSSCCCSEEEEETTTCCEEE-ETTTBCCCTT----------SSCEESCCSTT-TEEEEE---------EC
T ss_pred             cCCCCCCcCCCCCcCCCEEEEeCCCCcccc-cCcccccCCC----------CCcccCchhcc-ceEEee---------cC
Confidence            33456788876  78999999999999997 8999999999          6777776 344 555443         46


Q ss_pred             CCCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCC
Q 031507           86 SWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSS  149 (158)
Q Consensus        86 s~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~  149 (158)
                      ++|  |+||||+|++||+||||||+|||+                 |||+||||||+||+|++.
T Consensus        83 s~g--m~RtEV~C~~Cg~HLGHVF~DGP~-----------------ptg~RyCiNS~sL~F~p~  127 (144)
T 3e0o_A           83 SHG--MIRTEVRSRTADSHLGHVFNDGPG-----------------PNGLRYCINSAALRFVPK  127 (144)
T ss_dssp             CTT--SCEEEEEETTTCCEEEEEESCCSS-----------------TTCCEEEECGGGEEEEEH
T ss_pred             CCC--ceEEEEEcCCCCCccCCccCCCCC-----------------CCCCEeeeceeeEeeeec
Confidence            666  799999999999999999999997                 999999999999999986

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=1.2e-42  Score=274.61  Aligned_cols=103  Identities=22%  Similarity=0.412  Sum_probs=87.2

Q ss_pred             CccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCC
Q 031507           10 NHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNS   86 (158)
Q Consensus        10 ~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s   86 (158)
                      ---++|++.+  .+++|+|+|++||+||| +|++||||||          |||||++ |++.+|++..         |.+
T Consensus        44 gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KFdSg~----------GWPSF~~pi~~~~V~~~~---------D~s  103 (151)
T 2k8d_A           44 GTEPPFTGKYHDLHDDGIYRCICCGTDLF-DSETKFDSGT----------GWPSFYDVVSEHNIKLRE---------DRS  103 (151)
T ss_dssp             TCSSSCSCCCCCCCSCSEEEETTTTEEEE-EGGGSCCSTT----------CCSEESCCSCTTSEECCC---------CBT
T ss_pred             CCCCCCccCCcCCCCCEEEEecCCCCccc-CCcccccCCC----------CCcccCcccCCCceEEee---------CCC
Confidence            3456788887  78999999999999997 8999999999          6666666 3444555443         456


Q ss_pred             CCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507           87 WGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE  151 (158)
Q Consensus        87 ~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~  151 (158)
                      +|  |+||||+|++||+||||||+|||+                 |||+||||||+||+|.+.++
T Consensus       104 ~g--m~RtEV~C~~Cg~HLGHVF~DGP~-----------------ptg~RyCINS~sL~F~p~~~  149 (151)
T 2k8d_A          104 LG--MVRCEVLCARCDAHLGHVFDDGPR-----------------PTGKRYCMNSAALKFIPRDQ  149 (151)
T ss_dssp             TS--SCEEEEEETTEEEEEEEEEECSSS-----------------SSCEEEEECSTTEEEECSSS
T ss_pred             CC--ceEEEEEeCCCCCcCCcccCCCCC-----------------CCCCEEeeceeeecccchHH
Confidence            65  899999999999999999999997                 89999999999999998764

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=100.00  E-value=2.1e-42  Score=271.22  Aligned_cols=110  Identities=18%  Similarity=0.298  Sum_probs=86.3

Q ss_pred             CccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCC-CCCCCcCCCCceeEEcccCccceeecccccccccccCC
Q 031507           10 NHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIG-LKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNS   86 (158)
Q Consensus        10 ~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~G-psf~~~~~~G~~sF~~id~~~~~~~~e~~~~p~f~~~s   86 (158)
                      ---++|++.+  .+++|+|+|++||+||| +|++||||||| |||+++|.. |-.|  .++.+|+...         |.+
T Consensus        20 gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KFdSg~GWPSF~~pi~~-~~~~--~~~~~V~~~~---------D~s   86 (143)
T 2l1u_A           20 GTEAPFSGMYLNNKETGMYHCVCCDSPLF-SSEKKYCSGTGWPSFSEAYGS-KGSD--ESHTGILRRL---------DTS   86 (143)
T ss_dssp             TCCCSCCGGGSSCCCCEEEEESSSSCEEE-EGGGBCTTTTCCSBBSSCCSC-CTTH--HHHTCEEEEE---------ECT
T ss_pred             CCCCCCcCCCcCCcCCeEEEeCCCCCeee-cCcccccCCCCChhhchhhcc-cccc--CCCCceEEee---------ccc
Confidence            3446778777  78999999999999997 89999999996 566555531 1000  0033444432         456


Q ss_pred             CCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507           87 WGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE  151 (158)
Q Consensus        87 ~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~  151 (158)
                      +|  |+||||+|++||+||||||+|||+                 |||+||||||+||+|.+.++
T Consensus        87 ~g--m~RtEV~C~~Cg~HLGHVF~DGP~-----------------ptg~RyCINS~sL~F~p~~~  132 (143)
T 2l1u_A           87 LG--CPRMEVVCKQCEAHLGHVFPDGPK-----------------PTGQRFCINSVALKFKPSKP  132 (143)
T ss_dssp             TS--SCEEEEEESSSCCCCEEEECCSSC-----------------GGGCEEEECCTTEEEEESSB
T ss_pred             CC--ceEEEEEECCCCCcCCcccCCCCC-----------------CCCCEEEeeeeEEeccchhh
Confidence            66  799999999999999999999997                 99999999999999998754

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=100.00  E-value=4.5e-42  Score=274.27  Aligned_cols=102  Identities=22%  Similarity=0.390  Sum_probs=85.9

Q ss_pred             ccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCCC
Q 031507           11 HHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNSW   87 (158)
Q Consensus        11 ~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s~   87 (158)
                      --++|++.+  .+++|+|+|++||+||| +|++||||||          |||||++ |++++|++..         |.++
T Consensus        57 TErpftg~y~~~~~~GiY~C~~Cg~pLF-~S~~KFdSGc----------GWPSF~~pi~~~~V~~~~---------D~s~  116 (164)
T 3cxk_A           57 TEPPFTGEYTDTEDAGIYHCVVCGTALF-ESGAKYHSGC----------GWPSYFKPIDGEVIDEKM---------DYTH  116 (164)
T ss_dssp             CCCTTCSTTTTCCCSEEEEETTTCCEEE-EGGGBCCCCS----------SSCEESSCSSTTSEEEEE---------ECGG
T ss_pred             CCCCCcccccccCCCeEEEccCCCcccc-CCchhccCCC----------CCcccCcccCCCceEEeE---------CCCC
Confidence            346778877  88999999999999997 8999999999          6777766 3455555543         4556


Q ss_pred             CCceeeeEEecCccCCCeeeecCCCC-CCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507           88 GILRHRTKLLCRKCGNPIGIAYTDKT-SAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE  151 (158)
Q Consensus        88 g~~m~RTEv~C~~Cg~HLGHVF~DGP-~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~  151 (158)
                      |  |+||||+|++||+||||||+||| +                 |||+||||||+||+|+++++
T Consensus       117 g--m~RtEV~C~~Cg~HLGHVF~DGP~~-----------------ptg~RyCINS~sL~F~p~~~  162 (164)
T 3cxk_A          117 G--MTRVEVRCNQCGAHLGHVFEDGPRD-----------------KTGLRYCINSAALNFEAKPE  162 (164)
T ss_dssp             G--CCEEEEEETTTCCEEEEEESCSCTT-----------------TTSCEEEECGGGEEEEECC-
T ss_pred             C--cEEEEEEeCCCCCccCcccCCCCCC-----------------CCCCEEeeceeeEeeecccc
Confidence            5  79999999999999999999999 5                 89999999999999998754

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=100.00  E-value=3.3e-42  Score=270.81  Aligned_cols=102  Identities=22%  Similarity=0.231  Sum_probs=85.2

Q ss_pred             CccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCC
Q 031507           10 NHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNS   86 (158)
Q Consensus        10 ~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s   86 (158)
                      ---++|++.+  .+++|+|+|++||+||| +|++||||||          |||||++ |++.+|+...         |.+
T Consensus        26 gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KFdSg~----------GWPSF~~pi~~~~v~~~~---------D~s   85 (146)
T 3hcg_A           26 ATEYAFSHEYDHLFKPGIYVDVVSGEPLF-SSADKYDSGC----------GWPSFTRPIDAKSVTEHD---------DFS   85 (146)
T ss_dssp             CCCCTTCSGGGGCCCSEEEEETTTCCEEE-EGGGEECCSS----------SSCEESSCSSGGGEEEEE---------EEE
T ss_pred             CCCCCCCCCCcCCCCCEEEEecCCCcccc-cCcccccCCC----------CChhhccccCCCceEEee---------cCC
Confidence            3446788876  78999999999999997 8999999999          5666666 4445555443         456


Q ss_pred             CCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCC
Q 031507           87 WGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSS  149 (158)
Q Consensus        87 ~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~  149 (158)
                      +|  |+||||+|++||+||||||+|||+                .|||+||||||+||+|++.
T Consensus        86 ~g--m~RtEV~C~~Cg~HLGHVF~DGP~----------------~~tg~RyCiNS~sL~F~p~  130 (146)
T 3hcg_A           86 YN--MRRTEVRSHAADSHLGHVFPDGPR----------------DKGGLRYCINGASLKFIPL  130 (146)
T ss_dssp             TT--EEEEEEEETTTCCEEEEEESCSCG----------------GGTSCEEEECGGGEEEEEH
T ss_pred             CC--cEEEEEEeCCCCCccCceeCCCCC----------------CCCCCEEeeeeEEEEeeeh
Confidence            65  899999999999999999999996                2699999999999999885

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=255.18  Aligned_cols=92  Identities=26%  Similarity=0.453  Sum_probs=77.6

Q ss_pred             cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCCCCCceeeeEEec
Q 031507           20 SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNSWGILRHRTKLLC   98 (158)
Q Consensus        20 ~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s~g~~m~RTEv~C   98 (158)
                      .+++|+|+|++||+||| +|++||||||          |||||++ +++.+|++..|         . ++  |.||||+|
T Consensus         8 ~~~~G~Y~C~~Cg~pLF-~S~~KFdSg~----------GWPSF~~pi~~~~v~~~~D---------~-~~--~~RtEV~C   64 (105)
T 3mao_A            8 HFEPGVYVCAKCGYELF-SSRSKYAHSS----------PWPAFTETIHADSVAKRPE---------H-NR--SEALKVSC   64 (105)
T ss_dssp             CCCSEEEEETTTCCEEE-EGGGEECCSS----------SSCEESCCSSTTSEEEEEC---------T-TS--TTEEEEEE
T ss_pred             CCCCEEEEcCCCCCccc-cCCcccCCCC----------CChhhccccCCCceEEEec---------C-CC--CCEEEEEe
Confidence            57899999999999997 8999999999          5666666 44555554432         1 23  67999999


Q ss_pred             CccCCCeeeec-CCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507           99 RKCGNPIGIAY-TDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE  151 (158)
Q Consensus        99 ~~Cg~HLGHVF-~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~  151 (158)
                      ++||+|||||| +|||+                 |||+||||||+||+|.+.++
T Consensus        65 ~~C~~HLGHVF~~DGP~-----------------ptg~RyCiNS~sL~F~p~~~  101 (105)
T 3mao_A           65 GKCGNGLGHEFLNDGPK-----------------PGQSRFSIFSSSLKFVPKGK  101 (105)
T ss_dssp             TTTCCEEEEEETTCSSS-----------------TTCCEEEECGGGEEEEETTC
T ss_pred             CCCCCccCcccCCCCcC-----------------CCCCEEeeCeeeEEeeeccc
Confidence            99999999999 79997                 99999999999999999865

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=100.00  E-value=7.8e-41  Score=257.11  Aligned_cols=98  Identities=22%  Similarity=0.422  Sum_probs=78.3

Q ss_pred             cCCCCc---cccCeEEEccccCcccccCCCCccCCCCC-CCCCCcCCCCceeEEcccCccceeecccccccccccCCCCC
Q 031507           14 SFSSSI---SQRHVSYSCGSCGYELNLSSCNRNISSIG-LKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGI   89 (158)
Q Consensus        14 ~~~~s~---~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~G-psf~~~~~~G~~sF~~id~~~~~~~~e~~~~p~f~~~s~g~   89 (158)
                      .|+..+   .+++|+|+|++||+||| +|++||||||| |||+++|+.          ..++++++         .+   
T Consensus         6 ~F~ge~y~~~~e~G~Y~C~~Cg~pLF-~S~~KfdSg~GWPSF~~~i~~----------~~v~~~~d---------~~---   62 (124)
T 2kv1_A            6 FFGGEVFQNHFEPGVYVCAKCSYELF-SSHSKYAHSSPWPAFTETIHP----------DSVTKCPE---------KN---   62 (124)
T ss_dssp             CCCSCSGGGTTCCEEEEETTTCCBCC-CTTSCCCCCSSSCCBSCCCCC----------SSCEEEEC---------SS---
T ss_pred             CccCccccCCCCCEEEEecCCCCccc-ccCCcccCCCCCceeeccccc----------ceEEEEec---------cC---
Confidence            355552   56899999999999997 99999999995 455554444          44444332         22   


Q ss_pred             ceeeeEEecCccCCCeeeec-CCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507           90 LRHRTKLLCRKCGNPIGIAY-TDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE  151 (158)
Q Consensus        90 ~m~RTEv~C~~Cg~HLGHVF-~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~  151 (158)
                      +|+||||+|++||+|||||| +|||+                 |||+||||||+||+|++.++
T Consensus        63 ~~~r~Ev~C~~Cg~HLGHVF~~DGP~-----------------ptg~RyCINS~sL~F~p~~~  108 (124)
T 2kv1_A           63 RPEALKVSCGKCGNGLGHEFLNDGPK-----------------RGQSRFCIFSSSLKFVPKGK  108 (124)
T ss_dssp             STTCEEEECTTTTCCCEEECTTSCTT-----------------TTCSCEECCTTTEEEEECSS
T ss_pred             CceEEEEEEecCCCccCCccCCCCCC-----------------CCCCEEeecceeeEeEECcc
Confidence            25799999999999999999 89997                 99999999999999998644

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=100.00  E-value=2.1e-38  Score=273.63  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=86.1

Q ss_pred             CccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCC
Q 031507           10 NHHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNS   86 (158)
Q Consensus        10 ~~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s   86 (158)
                      ---++|++.+  .+++|+|+|++||+||| +|++||||||          |||||++ +++++|+...         |.+
T Consensus       192 gTE~pftg~y~~~~~~G~Y~c~~cg~pLF-~S~~KfdSg~----------GWPSF~~~i~~~~v~~~~---------D~s  251 (313)
T 3e0m_A          192 ATEAPFTNAYDQTFEEGIYVDITTGEPLF-FAKDKFASGC----------GWPSFSRPLSKELIHYYK---------DLS  251 (313)
T ss_dssp             CCCCSSSSTTTTCCCSEEEEETTTCCEEE-EGGGBCCCCS----------SSCEESSCSSGGGEEEEE---------ECC
T ss_pred             CCCCCCCCCCCCCCCCeEEEecCCCcccc-CCCccccCCC----------CCcccCcccCCCceEEee---------cCC
Confidence            3446788876  78999999999999997 8999999999          5666666 4455555443         456


Q ss_pred             CCCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCC
Q 031507           87 WGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSE  150 (158)
Q Consensus        87 ~g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~  150 (158)
                      +|  |+||||+|++||+||||||+|||.                .|||+||||||+||+|.+.+
T Consensus       252 ~g--m~RtEv~c~~c~~HLGHVF~DGp~----------------~ptg~RyCiNs~sL~F~p~~  297 (313)
T 3e0m_A          252 HG--MERIEVRSRSGSAHLGHVFTDGPR----------------ELGGLRYCINSASLRFVAKD  297 (313)
T ss_dssp             TT--CCEEEEEESSSCCEEEEEESCSCT----------------TTTSCEEEECGGGEEEEEHH
T ss_pred             CC--cEEEEEECCCCCCccCcccCCCCC----------------CCCCCEEeeceeeEeeeccc
Confidence            66  799999999999999999999994                28999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	100.0
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	100.0
d1x68a2	34	Four and a half LIM domains protein 5, FHL-5 {Huma	80.57

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=5.7e-41  Score=261.05  Aligned_cols=101  Identities=20%  Similarity=0.227  Sum_probs=83.8

Q ss_pred             ccccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCCC
Q 031507           11 HHHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNSW   87 (158)
Q Consensus        11 ~~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s~   87 (158)
                      --++|++.+  ++++|+|+|++||+||| +|++||+|||          |||||++ ++++.++.          .|.++
T Consensus        25 TE~pFtg~y~~~~~~G~Y~C~~C~~pLF-~S~~KfdSg~----------GWPSF~~~i~~~v~~~----------~D~s~   83 (143)
T d1xm0a1          25 TEPPFQNEYWDHKEEGLYVDIVSGKPLF-TSKDKFDSQC----------GWPSFTKPIEEEVEEK----------LDTSH   83 (143)
T ss_dssp             CCCCCSCSSCSCCSSEEEEESSTTCEEE-ETTTCCCCCS----------SSCCEEESCCCSEEEE----------CCCCT
T ss_pred             CCCCCCCCCcCCCCCceEEeccccchhh-hhhhhhccCC----------ccceeecccccceEEE----------ecCCC
Confidence            345677776  78999999999999997 9999999999          6666666 34333322          13455


Q ss_pred             CCceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCCC
Q 031507           88 GILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSEE  151 (158)
Q Consensus        88 g~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~~  151 (158)
                      |  |.||||+|++||+||||||+|||+                 |||+|||||++||.|++.++
T Consensus        84 g--m~R~Ev~C~~Cg~HLGHVF~DGp~-----------------ptg~RyCINs~sL~F~p~~~  128 (143)
T d1xm0a1          84 G--MIRTEVRSRTADSHLGHVFNDGPG-----------------PNGLRYCINSAALRFVPKHK  128 (143)
T ss_dssp             T--CCCCEEEESSCTTCCCEEEESCSS-----------------SSCEEEECCGGGEEEEETTT
T ss_pred             C--ccccceEecCCCCccCccCCCCCC-----------------CCCcEeeeeeeeEEEEehhh
Confidence            5  899999999999999999999997                 99999999999999998754

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=100.00  E-value=1.4e-40  Score=258.97  Aligned_cols=101  Identities=24%  Similarity=0.259  Sum_probs=84.3

Q ss_pred             cccCCCCc--cccCeEEEccccCcccccCCCCccCCCCCCCCCCcCCCCceeEEc-ccCccceeecccccccccccCCCC
Q 031507           12 HHSFSSSI--SQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVD-IDESRFTQVDELQCIPHFSKNSWG   88 (158)
Q Consensus        12 ~~~~~~s~--~~~~G~Y~C~~Cg~~Lf~sS~~KfdSg~Gpsf~~~~~~G~~sF~~-id~~~~~~~~e~~~~p~f~~~s~g   88 (158)
                      -++|++.+  ++++|+|+|++||+||| +|++||+|||          |||||++ ++++.++..+         |.++|
T Consensus        27 E~pfsg~y~~~~~~G~Y~C~~Cg~pLF-~S~~KfdSg~----------GWPSF~~~i~~~~v~~~~---------d~s~g   86 (144)
T d1l1da_          27 EYAFSHEYDHLFKPGIYVDVVSGEPLF-SSADKYDSGC----------GWPSFTRPIDAKSVTEHD---------DFSFN   86 (144)
T ss_dssp             CCTTCSGGGGCCCSEEEEETTTCCEEE-EGGGEECCSS----------SSCEESSCSSTTSEEEEE---------ECCTT
T ss_pred             CCCCCcccccccccCceEeccccceee-ehhhcccCCc----------cceeecccccccccccee---------ccccc
Confidence            45677776  78899999999999997 9999999999          6777766 4555555543         34555


Q ss_pred             CceeeeEEecCccCCCeeeecCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeceeeecCCC
Q 031507           89 ILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSSE  150 (158)
Q Consensus        89 ~~m~RTEv~C~~Cg~HLGHVF~DGP~~~~~~~~~~~~~~~~~~ptg~RYcIns~AL~~~~~~  150 (158)
                        |.||||+|++||+||||||+|||.                .++++||||||+||+|++.+
T Consensus        87 --m~R~Ev~C~~Cg~HLGHVF~DGp~----------------~~~~~RyCiNs~sL~F~p~~  130 (144)
T d1l1da_          87 --MRRTEVRSRAADSHLGHVFPDGPR----------------DKGGLRYCINGASLKFIPLE  130 (144)
T ss_dssp             --SCEEEEEETTTCCEEEEEESCSCG----------------GGTSCEEEECGGGEEEEEHH
T ss_pred             --ccceeeEecCCCCccCcccCCCCC----------------CCCCCEeccceeeEEEEeHH
Confidence              899999999999999999999996                15689999999999999764

>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.57  E-value=0.21  Score=28.69  Aligned_cols=17  Identities=35%  Similarity=1.030  Sum_probs=13.9

Q ss_pred             CCceeeeEEecCccCCC
Q 031507           88 GILRHRTKLLCRKCGNP  104 (158)
Q Consensus        88 g~~m~RTEv~C~~Cg~H  104 (158)
                      |+..+|.||+|++||+-
T Consensus        13 gfltq~~~i~c~~cgsg   29 (34)
T d1x68a2          13 GFLTQNKEIFCQKCGSG   29 (34)
T ss_dssp             CEEEETTEEEETTTTCC
T ss_pred             eeeeccCcEEehhcCCC
Confidence            44468999999999974