Citrus Sinensis ID: 031508

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MAASSSLFTPSTITVRKHQISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEHHHHHHHHHcccccccHHHHHHHccccccccccEEEcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEHHHHHHHHHHHHEEcHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
maassslftpstitvrkhqispssisfqglrplntraktplpklatsakrnsfggikaelstPLVISLSTGLSLFLGRfvffnfqrenvakqglpeqngvthfeaGDVRAKEYVSLLksndpvgfnIVDVLAWGSIGHIVAYYILAtssngydpkffg
Flexible Loop (DISEMBL)
maassslftpstitvrkhqispssisfqglrplntraktplpklatsakrnsfggikAELSTPLVISLSTGLSLFLGRFVFFNFQRENVakqglpeqngvTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATssngydpkffg
Low Complexity Region (SEG)
MAASSSLFTPSTITVRKHQISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG
Disordered region (IsUnstruct)
****************************************************FGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATS**********
Disordered Region (DISOPRED)
**********************************************************ELSTPLVISLSTGLSLFLGRFVFFNFQRE************VTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNG****FF*
Disordered Region (DISEMBL)
**********STITVRKHQISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG
Disordered Region (DISPRO)
***************************************************SFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASSSLFTPSTITVRKHQISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q9S7N7	160	Photosystem I reaction ce	yes	no	1.0	0.987	0.731	1e-60
P12357	167	Photosystem I reaction ce	N/A	no	0.829	0.784	0.736	2e-48
Q00327	143	Photosystem I reaction ce	N/A	no	0.620	0.685	0.828	1e-42
Q9SPM4	112	Photosystem I reaction ce	N/A	no	0.588	0.830	0.526	8e-23
P20120	39	Photosystem I reaction ce	N/A	no	0.246	1.0	0.923	9e-13
P14224	126	Photosystem I reaction ce	N/A	no	0.563	0.706	0.410	1e-12
P36886	131	Photosystem I reaction ce	N/A	no	0.632	0.763	0.317	5e-05
Q9SUI5	130	Photosystem I reaction ce	no	no	0.645	0.784	0.314	0.0001

>sp|Q9S7N7|PSAG_ARATH Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1

 Score =  231 bits (590), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/160 (73%), Positives = 134/160 (83%), Gaps = 2/160 (1%)

Query: 1   MAASSS-LFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGIKA 58
           MA S+S L +P+T +      +P+SISF GLRPL    + + LPKL+T+ +++S   ++A
Sbjct: 1   MATSASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRA 60

Query: 59  ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLK 118
           ELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLK
Sbjct: 61  ELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLK 120

Query: 119 SNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
           SNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct: 121 SNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160

Not yet known.
Arabidopsis thaliana (taxid: 3702)

>sp|P12357|PSAG_SPIOL Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1

 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/133 (73%), Positives = 106/133 (79%), Gaps = 2/133 (1%)

Query: 26  SFQGLRPLNTRAKTPLPKLATSAKRNSFG-GIKAELSTPLVISLSTGLSLFLGRFVFFNF 84
           SF GLRPL     +     + S          +AELS  LVISLSTGLSLFLGRFVFFNF
Sbjct: 36  SFSGLRPLKLNISSNNSSSSLSMSSARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNF 95

Query: 85  QRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 144
           QREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI
Sbjct: 96  QRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 154

Query: 145 LATSSNGYDPKFF 157
           LAT+SNGYDP FF
Sbjct: 155 LATASNGYDPSFF 167

Not yet known.

Spinacia oleracea (taxid: 3562)

>sp|Q00327|PSAG_HORVU Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1

 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 89/99 (89%), Gaps = 1/99 (1%)

Query: 60  LSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKS 119
           L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKS
Sbjct: 46  LEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKS 104

Query: 120 NDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
           NDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct: 105 NDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143

Not yet known.

Hordeum vulgare (taxid: 4513)

>sp|Q9SPM4|PSAG_TORRU Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1

 Score =  105 bits (263), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 65/93 (69%)

Query: 61  STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSN 120
           +T  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+N
Sbjct: 17  NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTN 76

Query: 121 DPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 153
           DP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct: 77  DPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109

Not yet known.

Tortula ruralis (taxid: 38588)

>sp|P20120|PSAG_PEA Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1

 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/39 (92%), Positives = 37/39 (94%)

Query: 59 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 97
          EL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct: 1  ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39

Not yet known.

Pisum sativum (taxid: 3888)

>sp|P14224|PSAG_CHLRE Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 6/95 (6%)

Query: 57  KAELSTPLVISLSTGLSLFLGRFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYV 114
           KA L   +VIS ST   L +GRFVF  +QR   N      P+  G T+F+  D++     
Sbjct: 29  KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS-- 84

Query: 115 SLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSS 149
           ++  +NDP GFNI+DV  WG++GH V + +LA +S
Sbjct: 85  TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119

Not yet known.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P36886|PSAK_HORVU Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare GN=PSAK PE=1 SV=1

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 23/123 (18%)

Query: 27  FQGLRPLNT-RAKTPLPKLATSAKRNSFGGIKAEL---STPLVISLSTGLSLFLGRFVFF 82
           F GLR  ++ R+   LP L    +R    GI+ +    ST L++  +T L LF GRF   
Sbjct: 14  FHGLRTYSSPRSMATLPSL----RRRRSQGIRCDYIGSSTNLIMVTTTTLMLFAGRF--- 66

Query: 83  NFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAY 142
                     GL             + A+E  S L++ DP GF + D LA G++GHI+  
Sbjct: 67  ----------GLAPSANRKATAGLKLEARE--SGLQTGDPAGFTLADTLACGAVGHIMGV 114

Query: 143 YIL 145
            I+
Sbjct: 115 GIV 117

Hordeum vulgare (taxid: 4513)

>sp|Q9SUI5|PSAK_ARATH Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 25/127 (19%)

Query: 27  FQGLRPLNTRAKTPLPKLATS--AKRNSFGGIKAEL-----STPLVISLSTGLSLFLGRF 79
           F GLR     A  P+  LA+    +R   G + A+      ST L++  ST L LF GRF
Sbjct: 12  FNGLRATKISAA-PVQGLASVQPMRRKGNGALGAKCDFIGSSTNLIMVTSTTLMLFAGRF 70

Query: 80  VFFNFQRENVAKQGL-PEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGH 138
                        GL P  N         +R +   S L++ DP GF + D LA G++GH
Sbjct: 71  -------------GLAPSAN---RKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGH 114

Query: 139 IVAYYIL 145
           I+   ++
Sbjct: 115 IIGVGVV 121

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
255581937	160	Photosystem I reaction center subunit V,	0.993	0.981	0.797	8e-64
15222757	160	photosystem I reaction center subunit V	1.0	0.987	0.731	5e-59
388495238	162	unknown [Lotus japonicus] gi|388506172|g	0.936	0.913	0.763	2e-57
297853272	159	hypothetical protein ARALYDRAFT_474626 [	0.987	0.981	0.729	8e-57
388516557	162	unknown [Medicago truncatula]	0.987	0.962	0.731	1e-56
224056901	159	hypothetical protein POPTRDRAFT_550669 [	0.943	0.937	0.772	2e-56
407057061	160	chloroplast photosystem I reaction cente	0.968	0.956	0.728	6e-56
351727473	155	uncharacterized protein LOC100305786 [Gl	0.898	0.916	0.75	1e-55
351725243	164	uncharacterized protein LOC100499718 [Gl	0.949	0.914	0.708	3e-55
407057059	150	chloroplast photosystem I reaction cente	0.879	0.926	0.763	4e-55

>gi|255581937|ref|XP_002531767.1| Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis] gi|223528603|gb|EEF30623.1| Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]

 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 126/158 (79%), Positives = 132/158 (83%), Gaps = 1/158 (0%)

Query: 1   MAASSSLFTPSTITVRKHQ-ISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAE 59
           MA S+  FTP+      H  +SPSSISFQGLRPL+T+AKT L KL  S        IKAE
Sbjct: 1   MATSTLFFTPTIQNHHHHHNLSPSSISFQGLRPLSTKAKTSLSKLTASTNSRRNFAIKAE 60

Query: 60  LSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKS 119
           LS  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKS
Sbjct: 61  LSPQLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKS 120

Query: 120 NDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 157
           NDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct: 121 NDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222757|ref|NP_175963.1| photosystem I reaction center subunit V [Arabidopsis thaliana] gi|20143884|sp|Q9S7N7.1|PSAG_ARATH RecName: Full=Photosystem I reaction center subunit V, chloroplastic; AltName: Full=PSI-G; Flags: Precursor gi|11692916|gb|AAG40061.1|AF324710_1 At1g55670 [Arabidopsis thaliana] gi|11908046|gb|AAG41452.1|AF326870_1 putative photosystem I subunit V precursor [Arabidopsis thaliana] gi|12642864|gb|AAK00374.1|AF339692_1 putative photosystem I subunit V precursor [Arabidopsis thaliana] gi|14190363|gb|AAK55662.1|AF378859_1 At1g55670/F20N2_3 [Arabidopsis thaliana] gi|5734520|emb|CAB52748.1| photosystem I subunit V precursor [Arabidopsis thaliana] gi|15215865|gb|AAK91476.1| At1g55670/F20N2_3 [Arabidopsis thaliana] gi|332195160|gb|AEE33281.1| photosystem I reaction center subunit V [Arabidopsis thaliana]

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 117/160 (73%), Positives = 134/160 (83%), Gaps = 2/160 (1%)

Query: 1   MAASSS-LFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGIKA 58
           MA S+S L +P+T +      +P+SISF GLRPL    + + LPKL+T+ +++S   ++A
Sbjct: 1   MATSASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRA 60

Query: 59  ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLK 118
           ELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLK
Sbjct: 61  ELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLK 120

Query: 119 SNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
           SNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct: 121 SNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495238|gb|AFK35685.1| unknown [Lotus japonicus] gi|388506172|gb|AFK41152.1| unknown [Lotus japonicus]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 130/152 (85%), Gaps = 4/152 (2%)

Query: 8   FTPSTITVRKHQISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFG-GIKAELSTPLVI 66
            +P+    + H + PS+++FQGLRPL TR+K  +  L+T  KR S G  +KAEL+T LVI
Sbjct: 14  LSPTIQKSQTHLLKPSNVTFQGLRPL-TRSK--VSTLSTPNKRVSRGFVVKAELNTSLVI 70

Query: 67  SLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFN 126
           SLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG+THFEAGD RAKEYVSLLKSNDPVGFN
Sbjct: 71  SLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGLTHFEAGDTRAKEYVSLLKSNDPVGFN 130

Query: 127 IVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
           IVDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct: 131 IVDVLAWGSIGHIVAYYILATASNGYDPSFFG 162

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853272|ref|XP_002894517.1| hypothetical protein ARALYDRAFT_474626 [Arabidopsis lyrata subsp. lyrata] gi|297340359|gb|EFH70776.1| hypothetical protein ARALYDRAFT_474626 [Arabidopsis lyrata subsp. lyrata]

 Score =  224 bits (571), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 132/159 (83%), Gaps = 3/159 (1%)

Query: 1   MAASSS-LFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGI-K 57
           MA+S+S L +P+T +      +P+SISF GLRPL    + + LPKL+T++ R S   + +
Sbjct: 1   MASSASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTSGRKSSSAVVR 60

Query: 58  AELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLL 117
           AELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLL
Sbjct: 61  AELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLL 120

Query: 118 KSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKF 156
           KSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP F
Sbjct: 121 KSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSF 159

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516557|gb|AFK46340.1| unknown [Medicago truncatula]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 133/164 (81%), Gaps = 8/164 (4%)

Query: 1   MAASSSLFTPS---TITVRKHQ---ISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFG 54
           MAAS+S    +   T T++KH+   + PSS+SFQG  PL TR+ T +     S KR S  
Sbjct: 1   MAASASSMISTHALTTTIQKHKTHNLKPSSLSFQGFNPL-TRS-TKVNTFTPSKKRFSSL 58

Query: 55  GIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYV 114
            +KAEL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGD RAKEYV
Sbjct: 59  VVKAELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDKRAKEYV 118

Query: 115 SLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
           SLLKSNDPVGFN+VDVLAWGS+GHIVAYYILATSSNGYDP FFG
Sbjct: 119 SLLKSNDPVGFNLVDVLAWGSLGHIVAYYILATSSNGYDPSFFG 162

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056901|ref|XP_002299080.1| hypothetical protein POPTRDRAFT_550669 [Populus trichocarpa] gi|118488141|gb|ABK95890.1| unknown [Populus trichocarpa] gi|222846338|gb|EEE83885.1| hypothetical protein POPTRDRAFT_550669 [Populus trichocarpa]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 133/154 (86%), Gaps = 5/154 (3%)

Query: 1   MAASSSLFTPSTITVRKHQISPSSISFQGLRPLNTRAKT-PLPKLATSAKRNSFGGIKAE 59
           MA SS LFTP TI    H ++PS++SFQGLRPL TRAKT  L K++T+A + S   +KAE
Sbjct: 1   MATSSLLFTP-TIQKNHHNLTPSNLSFQGLRPL-TRAKTTSLSKISTAAPKRSLA-VKAE 57

Query: 60  LSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKS 119
           L+  LVISLSTG+SLFLGRFVFFNFQRENVAKQ +PEQNG+THFEAGD RAKEYVSLLKS
Sbjct: 58  LNPSLVISLSTGVSLFLGRFVFFNFQRENVAKQ-VPEQNGLTHFEAGDKRAKEYVSLLKS 116

Query: 120 NDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 153
           NDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYD
Sbjct: 117 NDPVGFNIVDVLAWGSIGHIVAYYILATASNGYD 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407057061|gb|AFS88925.1| chloroplast photosystem I reaction center subunit V-2 [Musa AB Group] gi|421958217|gb|AFX72947.1| photosystem I reaction center subunit V-2 [Musa AB Group]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 118/162 (72%), Positives = 129/162 (79%), Gaps = 9/162 (5%)

Query: 3   ASSSLFTPSTITVRKHQI-SPSSISFQGLRPLNTRAKTPLPK-----LATSAKRNSFGGI 56
           A+SSLFT     ++K  I +PSS SF+GLRPL     +  P+     +    +    GGI
Sbjct: 2   ATSSLFT---YPMQKGSILTPSSTSFRGLRPLKPTDSSQFPQTRAISIKPVRRVRKPGGI 58

Query: 57  KAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSL 116
           +AEL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGD RAKEYV L
Sbjct: 59  RAELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDTRAKEYVGL 118

Query: 117 LKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
           LKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG
Sbjct: 119 LKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 160

Source: Musa AB Group

Species: Musa x paradisiaca

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727473|ref|NP_001236650.1| uncharacterized protein LOC100305786 [Glycine max] gi|255626601|gb|ACU13645.1| unknown [Glycine max]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/144 (75%), Positives = 123/144 (85%), Gaps = 2/144 (1%)

Query: 16  RKHQISPSSISFQGLRPLNTRAKTPLPKLATSAKRN-SFGGIKAELSTPLVISLSTGLSL 74
           + H + PS++ FQGLRPL    K    K++T+ KR    GG++AEL++ LVISLSTGLSL
Sbjct: 13  KHHHLKPSNVCFQGLRPLARFTKASSTKVSTTTKRVIPKGGVRAELNSALVISLSTGLSL 72

Query: 75  FLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWG 134
           FLGRFVFFNFQRENVAKQ +PEQNG+THFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWG
Sbjct: 73  FLGRFVFFNFQRENVAKQ-VPEQNGLTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWG 131

Query: 135 SIGHIVAYYILATSSNGYDPKFFG 158
           SIGH+VAYYILAT+SNGYDP FFG
Sbjct: 132 SIGHVVAYYILATTSNGYDPAFFG 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725243|ref|NP_001235038.1| uncharacterized protein LOC100499718 [Glycine max] gi|255626045|gb|ACU13367.1| unknown [Glycine max]

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 130/158 (82%), Gaps = 8/158 (5%)

Query: 4   SSSLFTPSTITVRKHQISPSSISFQGLRPLNTRAKTPLPKLATSAKR---NSFGGIKAEL 60
           S+   +PST   + H + PS++ FQGLRPL TR  T   K++++ KR       G++AEL
Sbjct: 12  STPALSPSTSIQKHHHLKPSNVCFQGLRPL-TRFTT---KVSSTTKRVIPKGGVGVRAEL 67

Query: 61  STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSN 120
           ++ LVISLSTGLSLFLGRFVFFNFQRENVAKQ +PEQNG+THFEAGD RAKEYVSLLKSN
Sbjct: 68  NSALVISLSTGLSLFLGRFVFFNFQRENVAKQ-VPEQNGLTHFEAGDTRAKEYVSLLKSN 126

Query: 121 DPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
           DPVGFNIVDVLAWGSIGH+VAYYILAT+SNGYDP FFG
Sbjct: 127 DPVGFNIVDVLAWGSIGHVVAYYILATTSNGYDPAFFG 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407057059|gb|AFS88924.1| chloroplast photosystem I reaction center subunit V-1 [Musa AB Group] gi|421958219|gb|AFX72948.1| photosystem I reaction center subunit V-1 [Musa AB Group]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 110/144 (76%), Positives = 119/144 (82%), Gaps = 5/144 (3%)

Query: 20  ISPSSISFQGLRPLNTRAKTPLPK-----LATSAKRNSFGGIKAELSTPLVISLSTGLSL 74
           ++PSS SF+GLRPL     +  P+     +    +    GGI+AEL+  LVISLSTGLSL
Sbjct: 7   LTPSSTSFRGLRPLKPTDSSQFPQTRAISIKPVRRVRKPGGIRAELNPSLVISLSTGLSL 66

Query: 75  FLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWG 134
           FLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGD RAKEYV LLKSNDPVGFNIVDVLAWG
Sbjct: 67  FLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDTRAKEYVGLLKSNDPVGFNIVDVLAWG 126

Query: 135 SIGHIVAYYILATSSNGYDPKFFG 158
           SIGHIVAYYILATSSNGYDPKFFG
Sbjct: 127 SIGHIVAYYILATSSNGYDPKFFG 150

Source: Musa AB Group

Species: Musa x paradisiaca

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2020502	160	PSAG "AT1G55670" [Arabidopsis	1.0	0.987	0.731	1.2e-56
TAIR|locus:2204207	130	PSAK "AT1G30380" [Arabidopsis	0.677	0.823	0.333	1.5e-05

TAIR|locus:2020502 PSAG "AT1G55670" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 117/160 (73%), Positives = 134/160 (83%)

Query:     1 MAASSS-LFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGIKA 58
             MA S+S L +P+T +      +P+SISF GLRPL    + + LPKL+T+ +++S   ++A
Sbjct:     1 MATSASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRA 60

Query:    59 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLK 118
             ELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLK
Sbjct:    61 ELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLK 120

Query:   119 SNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
             SNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct:   121 SNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009522 "photosystem I" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;ISS;IMP

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IMP

GO:0050821 "protein stabilization" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009780 "photosynthetic NADP+ reduction" evidence=IMP

GO:0042550 "photosystem I stabilization" evidence=IMP

GO:0030093 "chloroplast photosystem I" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2204207 PSAK "AT1G30380" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 44/132 (33%), Positives = 60/132 (45%)

Query:    27 FQGLRPLNTRAKTPLPKLAT--SAKRNSFG--GIKAEL---STPLVISLSTGLSLFLGRF 79
             F GLR     A  P+  LA+    +R   G  G K +    ST L++  ST L LF GRF
Sbjct:    12 FNGLRATKISA-APVQGLASVQPMRRKGNGALGAKCDFIGSSTNLIMVTSTTLMLFAGRF 70

Query:    80 VFFNFQRENVAKQGL-PEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGH 138
                          GL P  N      AG +R +   S L++ DP GF + D LA G++GH
Sbjct:    71 -------------GLAPSANRKA--TAG-LRLEARDSGLQTGDPAGFTLADTLACGTVGH 114

Query:   139 IVAYYILATSSN 150
             I+   ++    N
Sbjct:   115 IIGVGVVLGLKN 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      158       158   0.00085  106 3  11 22  0.36    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  121 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.80u 0.17s 13.97t   Elapsed:  00:00:00
  Total cpu time:  13.80u 0.17s 13.97t   Elapsed:  00:00:00
  Start:  Sat May 11 04:51:00 2013   End:  Sat May 11 04:51:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009522 "photosystem I" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P20120	PSAG_PEA	No assigned EC number	0.9230	0.2468	1.0	N/A	no
Q9S7N7	PSAG_ARATH	No assigned EC number	0.7312	1.0	0.9875	yes	no
P12357	PSAG_SPIOL	No assigned EC number	0.7368	0.8291	0.7844	N/A	no
Q00327	PSAG_HORVU	No assigned EC number	0.8282	0.6202	0.6853	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
PLN00091	160	PLN00091, PLN00091, photosystem I reaction center	5e-85
PLN00081	141	PLN00081, PLN00081, photosystem I reaction center	4e-56
TIGR03051	88	TIGR03051, PS_I_psaG_plant, photosystem I reaction	9e-49
pfam01241	78	pfam01241, PSI_PSAK, Photosystem I psaG / psaK	4e-27
PLN03070	128	PLN03070, PLN03070, photosystem I reaction center	6e-07
TIGR03050	83	TIGR03050, PS_I_psaK_plant, photosystem I reaction	2e-05

>gnl|CDD|215052 PLN00091, PLN00091, photosystem I reaction center subunit V (PsaG); Provisional

 Score =  245 bits (628), Expect = 5e-85
 Identities = 119/161 (73%), Positives = 135/161 (83%), Gaps = 4/161 (2%)

Query: 1   MAASSSLFTPSTITVRKH-QISPSSISFQGLRPLNTRAKTPL-PKLATSA-KRNSFGGIK 57
           MA S+ L TP+      H  ++PSSISFQGLRPL+    T L PK++T+A +++S   ++
Sbjct: 1   MATSALLSTPTFSKAIHHHNLTPSSISFQGLRPLSKAKTTSLLPKISTTAPRKSSAAVVR 60

Query: 58  AELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLL 117
           AEL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQ +PEQNG+THFEAGD RAKEYVSLL
Sbjct: 61  AELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQ-VPEQNGLTHFEAGDDRAKEYVSLL 119

Query: 118 KSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 158
           KSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct: 120 KSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160

Length = 160

>gnl|CDD|165655 PLN00081, PLN00081, photosystem I reaction center subunit V (PsaG); Provisional

 Score =  172 bits (436), Expect = 4e-56
 Identities = 91/138 (65%), Positives = 105/138 (76%), Gaps = 2/138 (1%)

Query: 20  ISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRF 79
           +SP S++   L P + R +        +  R      +AELS  LVISLSTG+SLFLGRF
Sbjct: 6   LSPPSVAGLRLAP-SPRVRAARVAFRAAPARRRSVAARAELSASLVISLSTGVSLFLGRF 64

Query: 80  VFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHI 139
           VFFNFQRENVAKQ +P QNG THF+AGD RAKE+ +LLKSNDPVGFN+VDVLAWGS+GHI
Sbjct: 65  VFFNFQRENVAKQ-VPAQNGKTHFDAGDERAKEFAALLKSNDPVGFNLVDVLAWGSLGHI 123

Query: 140 VAYYILATSSNGYDPKFF 157
           VAYYILAT SNGYDP FF
Sbjct: 124 VAYYILATCSNGYDPNFF 141

Length = 141

>gnl|CDD|132095 TIGR03051, PS_I_psaG_plant, photosystem I reaction center subunit V, chloroplast

 Score =  151 bits (384), Expect = 9e-49
 Identities = 63/89 (70%), Positives = 70/89 (78%), Gaps = 1/89 (1%)

Query: 65  VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVG 124
           VIS STGL L LGRFVF NFQR NVAKQ  PEQNG     A D  A +Y SLLKSNDP G
Sbjct: 1   VISGSTGLFLALGRFVFLNFQRRNVAKQV-PEQNGPKTTGATDFDALQYASLLKSNDPAG 59

Query: 125 FNIVDVLAWGSIGHIVAYYILATSSNGYD 153
           FN+VDVLAWG++GHIVA +ILAT++NGYD
Sbjct: 60  FNLVDVLAWGALGHIVAVFILATANNGYD 88

Length = 88

>gnl|CDD|216383 pfam01241, PSI_PSAK, Photosystem I psaG / psaK

 Score = 96.4 bits (240), Expect = 4e-27
 Identities = 44/93 (47%), Positives = 52/93 (55%), Gaps = 15/93 (16%)

Query: 62  TPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSND 121
           TPLVIS+ST  +LF GRF F+  QR N    GLP  NG +                KSND
Sbjct: 1   TPLVISVSTTCNLFAGRFGFYPIQRRNAGT-GLPIANGESIL--------------KSND 45

Query: 122 PVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 154
           P GFN+VDVLA GS+GHI+   I+   SNG   
Sbjct: 46  PAGFNLVDVLATGSLGHILGAGIVLGLSNGGAL 78

Length = 78

>gnl|CDD|178619 PLN03070, PLN03070, photosystem I reaction center subunit psaK 247; Provisional

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 19/126 (15%)

Query: 19  QISPSSISFQGLRPLNTRAKTPLPKLA-TSAKRNSFGGIKAEL---STPLVISLSTGLSL 74
            +  +   F GLR  +      L  +     K     G + +    ST L++  ST L L
Sbjct: 4   TMMTTLPQFNGLRASSAAPVKSLVAVQPMRRKGKGALGARCDYIGSSTNLIMVTSTTLML 63

Query: 75  FLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWG 134
           F GRF         +A     +       EA D       S L++ DP GF + D LA G
Sbjct: 64  FAGRF--------GLAPSANRKATAGLKLEARD-------SGLQTGDPAGFTLADTLACG 108

Query: 135 SIGHIV 140
           ++GHI+
Sbjct: 109 AVGHII 114

Length = 128

>gnl|CDD|188274 TIGR03050, PS_I_psaK_plant, photosystem I reaction center PsaK, plant form

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 15/80 (18%)

Query: 61  STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSN 120
           ST L++  ST L LF GRF          A  GL         EA D       S L++ 
Sbjct: 5   STNLIMVTSTTLMLFAGRFGLAPSANRK-ATAGL-------KLEARD-------SGLQTG 49

Query: 121 DPVGFNIVDVLAWGSIGHIV 140
           DP GF + D LA G++GHI+
Sbjct: 50  DPAGFTLADTLACGAVGHII 69

This protein family is based on a model that separates the photosystem I PsaK subunit of chloroplasts from chloroplast PsaG protein and from Cyanobacterial PsaK, both of which show sequence similarity. Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PLN00091	160	photosystem I reaction center subunit V (PsaG); Pr	100.0
PLN00081	141	photosystem I reaction center subunit V (PsaG); Pr	100.0
TIGR03051	88	PS_I_psaG_plant photosystem I reaction center subu	100.0
PLN03070	128	photosystem I reaction center subunit psaK 247; Pr	99.97
PF01241	81	PSI_PSAK: Photosystem I psaG / psaK; InterPro: IPR	99.92
TIGR03050	83	PS_I_psaK_plant photosystem I reaction center PsaK	99.88
CHL00164	86	psaK photosystem I subunit X; Validated	98.41
TIGR03049	81	PS_I_psaK photosystem I reaction center subunit Ps	97.7
PRK13214	86	photosystem I reaction center subunit X; Reviewed	97.11
PRK13216	91	photosystem I reaction center subunit X-like prote	95.91

>PLN00091 photosystem I reaction center subunit V (PsaG); Provisional

Probab=100.00  E-value=1.4e-69  Score=431.54  Aligned_cols=157  Identities=74%  Similarity=1.114  Sum_probs=137.1

Q ss_pred             CCCcCCcccCccccc-cccccCCCCccccccccCCCCCCCCCcc--cccccccCccceeeecCCCCeEEeehhHHHhhhh
Q 031508            1 MAASSSLFTPSTITV-RKHQISPSSISFQGLRPLNTRAKTPLPK--LATSAKRNSFGGIKAELSTPLVISLSTGLSLFLG   77 (158)
Q Consensus         1 ma~~~~~~~~~~~~~-~~~~~~p~~~sF~Glr~~~~~~~~~~~~--~~~~~kr~~~~~vrad~~tnlIis~ST~l~LflG   77 (158)
                      ||+++-..+|+.++. +|||++|+..+|+||||..+........  +.+..+|++.+.+||++++++|||+||+++||||
T Consensus         1 ma~~~~~~~p~~~~~~~~~~~~~~~~sF~GLRpl~~~~~~s~~~~~~~t~~~~s~~~~~~a~l~~~~vIs~sTa~~L~LG   80 (160)
T PLN00091          1 MATSALLSTPTFSKAIHHHNLTPSSISFQGLRPLSKAKTTSLLPKISTTAPRKSSAAVVRAELNPSLVISLSTGLSLFLG   80 (160)
T ss_pred             CcccccccCCccchhhhhhccCCCcccccccccccccccccccccccccccccchhheeeeccCccEEEEcchHHHHHhh
Confidence            777764444554443 4555789999999999988755443212  2334667775679999999999999999999999


Q ss_pred             ccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhhhhhhccCCCCCCCC
Q 031508           78 RFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF  157 (158)
Q Consensus        78 RFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~iLAt~sngy~p~~f  157 (158)
                      ||||+|||||||+|| +|+|||+||||+||.|+||++++||||||||||||||||||||||||||+||||+||||||+||
T Consensus        81 RFVFl~fQR~~v~kq-~P~qnG~Thfeagd~ra~E~~sllksnDPaGFtiVDVlAWGSlGH~Vg~~iLAt~sngy~p~f~  159 (160)
T PLN00091         81 RFVFFNFQRENVAKQ-VPEQNGLTHFEAGDDRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFF  159 (160)
T ss_pred             ceeeeccchhhHhhh-CCCcCCceeeecccHHHHHHHhhhccCCCCcceeehhhhcchhHHHHhhhheeeccCCCCCCCC
Confidence            999999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 031508          158 G  158 (158)
Q Consensus       158 ~  158 (158)
                      |
T Consensus       160 ~  160 (160)
T PLN00091        160 G  160 (160)
T ss_pred             C
Confidence            7

>PLN00081 photosystem I reaction center subunit V (PsaG); Provisional

Probab=100.00  E-value=2e-62  Score=384.20  Aligned_cols=132  Identities=69%  Similarity=1.057  Sum_probs=123.7

Q ss_pred             CCccccccccCCCCCCC---CCcccccccccCccceeeecCCCCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCC
Q 031508           23 SSISFQGLRPLNTRAKT---PLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG   99 (158)
Q Consensus        23 ~~~sF~Glr~~~~~~~~---~~~~~~~~~kr~~~~~vrad~~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng   99 (158)
                      |.|+..|||...+++..   .+++..|+.+|++  .+||++++++|||+||+++||||||||+||||||++|| +|+|||
T Consensus         7 ~~~~~~~~~~~~~~~~~~ar~a~r~aP~~r~~v--~~rA~l~~~lvIS~St~~~L~LGRFVFlpfQR~~va~q-~P~QNG   83 (141)
T PLN00081          7 SPPSVAGLRLAPSPRVRAARVAFRAAPARRRSV--AARAELSASLVISLSTGVSLFLGRFVFFNFQRENVAKQ-VPAQNG   83 (141)
T ss_pred             CCccccceecCCCcchhhhhcccccCcchhhhh--eeeeecCceEEEEcchHHHHHhhhheeehhhHHHHhhh-CCccCC
Confidence            56889999988887753   5666667677777  89999999999999999999999999999999999999 899999


Q ss_pred             ceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhhhhhhccCCCCCCCC
Q 031508          100 VTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF  157 (158)
Q Consensus       100 ~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~iLAt~sngy~p~~f  157 (158)
                      +||||+||+|+||++++||||||+|||||||||||+|||||||+||||+||||||+||
T Consensus        84 ~ThF~agd~ra~e~~~~l~tnDPaGF~ivDvlawGsiGH~vg~~iLAt~sngy~p~ff  141 (141)
T PLN00081         84 KTHFDAGDERAKEFAALLKSNDPVGFNLVDVLAWGSLGHIVAYYILATCSNGYDPNFF  141 (141)
T ss_pred             cchhhhHHHHHHHHHHhhccCCCCccchhhhhhhhhhhhhhhheeeeeccCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999998

>TIGR03051 PS_I_psaG_plant photosystem I reaction center subunit V, chloroplast

Probab=100.00  E-value=1.9e-49  Score=292.49  Aligned_cols=88  Identities=72%  Similarity=1.074  Sum_probs=87.1

Q ss_pred             EEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhhh
Q 031508           65 VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI  144 (158)
Q Consensus        65 Iis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~i  144 (158)
                      |||+||+++||+|||||+||||+|++|| +|+|||++|++++|.|++|++|.|+||||||||||||||||||||+|||+|
T Consensus         1 vIs~ST~~~L~lGRFVflp~QR~~v~~~-~P~qnG~~~~~a~~~~a~e~~s~l~s~dpaGFtivDvlawGslgh~i~~~i   79 (88)
T TIGR03051         1 VISGSTGLFLALGRFVFLNFQRRNVAKQ-VPEQNGPKTTGATDFDALQYASLLKSNDPAGFNLVDVLAWGALGHIVAVFI   79 (88)
T ss_pred             CccchhHHHHHhhhheeccchHhhhhhc-CccccCcccccchhHHHHHHhhhcccCCCCCcchhhhhhhcchhccEEEEE
Confidence            6999999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCC
Q 031508          145 LATSSNGYD  153 (158)
Q Consensus       145 LAt~sngy~  153 (158)
                      |||.+||||
T Consensus        80 lat~~nGy~   88 (88)
T TIGR03051        80 LATANNGYD   88 (88)
T ss_pred             EEecccCCC
Confidence            999999997

>PLN03070 photosystem I reaction center subunit psaK 247; Provisional

Probab=99.97  E-value=1.3e-32  Score=214.20  Aligned_cols=114  Identities=31%  Similarity=0.443  Sum_probs=89.8

Q ss_pred             CCCCccccccccCCC--CCCCCCcccccc-cccCccceeeecC---CCCeEEeehhHHHhhhhccccchhhhhhhhhcCC
Q 031508           21 SPSSISFQGLRPLNT--RAKTPLPKLATS-AKRNSFGGIKAEL---STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGL   94 (158)
Q Consensus        21 ~p~~~sF~Glr~~~~--~~~~~~~~~~~~-~kr~~~~~vrad~---~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~   94 (158)
                      .+.+|||+|||+.++  .++.++++++++ .||++  ++||||   ++|+||++||+++||+|||+|+|+|++|. .+  
T Consensus         6 ~~~~p~F~glr~~~~~~~~~~~~~~~~~~~~k~~~--~v~~d~igs~~nlIMi~~n~laL~iGRF~i~P~~nk~~-~~--   80 (128)
T PLN03070          6 MTTLPQFNGLRASSAAPVKSLVAVQPMRRKGKGAL--GARCDYIGSSTNLIMVTSTTLMLFAGRFGLAPSANRKA-TA--   80 (128)
T ss_pred             ccccccccccccccccccccccccccccccCCcce--eeEeeecCCCCcEeehHHHHHHHHHHHheechhhccCC-CC--
Confidence            356999999999665  333466666553 56666  899998   99999999999999999999998876542 11  


Q ss_pred             CccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhh-hhhhccCC
Q 031508           95 PEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY-ILATSSNG  151 (158)
Q Consensus        95 P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~-iLAt~sng  151 (158)
                          | ++++.+       +++|++|||+||+++|+|||||+|||||++ ||.-++-|
T Consensus        81 ----G-~~lp~~-------~s~l~s~dpaGf~~~~~La~~s~GHiiG~G~ILGL~~~G  126 (128)
T PLN03070         81 ----G-LKLEAR-------DSGLQTGDPAGFTLADTLACGAVGHIIGVGVVLGLKNIG  126 (128)
T ss_pred             ----C-ccCccc-------ccccccCCCCCcCHHHHHHhhhHHHHHHHHHHhcchhhc
Confidence                1 345554       489999999999999999999999999999 66554443

>PF01241 PSI_PSAK: Photosystem I psaG / psaK; InterPro: IPR000549 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.92  E-value=7.3e-27  Score=169.38  Aligned_cols=80  Identities=45%  Similarity=0.483  Sum_probs=71.5

Q ss_pred             CCCCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHH
Q 031508           60 LSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHI  139 (158)
Q Consensus        60 ~~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHi  139 (158)
                      +.++.|++++|++.|+++|||++|+||+|+. .++|.+++            |  ++|+||||+||+++|||||||+|||
T Consensus         2 sws~~v~~imi~~nl~a~~fg~~~i~~~~~g-~~lP~~~~------------~--~~l~s~~p~Gf~~~dvLA~~SlGHi   66 (81)
T PF01241_consen    2 SWSPKVAIIMIACNLFAIRFGKAPIQRPNVG-PGLPLQNP------------E--SGLASNDPAGFGLPDVLATGSLGHI   66 (81)
T ss_dssp             TTTTTCHHHHHHHHHHTTCCCCTTSSSSSST-SSSSSTTT---------------TTTTTSSCHHCCTTHHHCTTSSSCC
T ss_pred             CcchhHHHHHHHHHHHHHHHhheeeccCCCC-CCCCCCCc------------c--cccccCCCCCCCHHHHHHHhhHHHH
Confidence            4678999999999999999999999999995 55999998            2  7899999999999999999999999


Q ss_pred             HhhhhhhhccCCCCC
Q 031508          140 VAYYILATSSNGYDP  154 (158)
Q Consensus       140 Ig~~iLAt~sngy~p  154 (158)
                      ||++++...+|.+++
T Consensus        67 iG~g~IlGl~~~G~l   81 (81)
T PF01241_consen   67 IGAGIILGLSNIGVL   81 (81)
T ss_dssp             CSSSCTTSSSTT---
T ss_pred             HHHHHHHHhhhcCCC
Confidence            999999999988753

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. Photosystem I (PSI) [] is an integral membrane protein complex that uses light energy to mediate electron transfer from plastocyanin to ferredoxin. It is found in the chloroplasts of plants and cyanobacteria. PSI is composed of at least 14 different subunits, two of which, PSI-G (gene psaG) and PSI-K (gene psaK), are small hydrophobic proteins of about 7 to 9 Kd and evolutionary related []. Both seem to contain two transmembrane regions. Cyanobacteria contain only PSI-K.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0016020 membrane; PDB: 2O01_G 2WSF_G 2WSE_G 2WSC_G 3PCQ_K 1JB0_K.

>TIGR03050 PS_I_psaK_plant photosystem I reaction center PsaK, plant form

Probab=99.88  E-value=1.7e-23  Score=153.40  Aligned_cols=77  Identities=36%  Similarity=0.552  Sum_probs=63.0

Q ss_pred             CCCCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHH
Q 031508           60 LSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHI  139 (158)
Q Consensus        60 ~~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHi  139 (158)
                      .++|+||++||+++|++|||+++|+||+|... |..       .       ++..+++++|||+||+++|+|||||+|||
T Consensus         4 ~~~~~IMi~~n~lal~~Grf~i~p~~~k~~~~-G~~-------l-------p~~~~~~~s~dfagf~~~~~La~~s~GHi   68 (83)
T TIGR03050         4 SSTNLIMVTSTTLMLFAGRFGLAPSANRKATA-GLK-------L-------EARESGLQTGDPAGFTLADTLACGAVGHI   68 (83)
T ss_pred             CccchHHHHHHHHHHHHHHHhcchhhhcCCCC-CcC-------C-------cccccccCcCCCCCcCHHHHHHHhhHHHH
Confidence            57899999999999999999999999888633 321       1       11127899999999999999999999999


Q ss_pred             Hhhh-hhhhccCC
Q 031508          140 VAYY-ILATSSNG  151 (158)
Q Consensus       140 Ig~~-iLAt~sng  151 (158)
                      ||++ ||.-++-|
T Consensus        69 iG~g~ilGL~~~G   81 (83)
T TIGR03050        69 MGVGIVLGLKNIG   81 (83)
T ss_pred             HHHHHHHhhhhhc
Confidence            9999 66544433

This protein family is based on a model that separates the photosystem I PsaK subunit of chloroplasts from chloroplast PsaG protein and from Cyanobacterial PsaK, both of which show sequence similarity.

>CHL00164 psaK photosystem I subunit X; Validated

Probab=98.41  E-value=2.2e-07  Score=69.06  Aligned_cols=67  Identities=30%  Similarity=0.457  Sum_probs=48.6

Q ss_pred             ecCC--CCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhh
Q 031508           58 AELS--TPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGS  135 (158)
Q Consensus        58 ad~~--tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGs  135 (158)
                      -.|+  +++||.+|+.+++++|||..-   ..|+.-+ +|.                      ++ -.||++.|+||..|
T Consensus        14 ~~Wsp~vaiIMI~cNilai~igk~~I~---~~~~Gp~-lP~----------------------~~-f~gf~l~~lLat~s   66 (86)
T CHL00164         14 SPWSASTAIIMILCNLLCIVAGRYAIQ---VRGLGPS-IPI----------------------SG-LKGFGLPELLATTS   66 (86)
T ss_pred             CCcCCcceehhhHHHHHHHHHHHHHHc---CCCCCCC-CCC----------------------cc-cCCCCHHHHHHHhh
Confidence            3564  689999999999999999982   1111110 111                      22 58999999999999


Q ss_pred             hhHHHhhh-hhhhccCC
Q 031508          136 IGHIVAYY-ILATSSNG  151 (158)
Q Consensus       136 iGHiIg~~-iLAt~sng  151 (158)
                      +|||||++ ||.=++-|
T Consensus        67 ~GHIiG~G~ILGL~n~G   83 (86)
T CHL00164         67 LGHIIGAGSILGLSYVG   83 (86)
T ss_pred             hHHHHHHHHHHhhhhcc
Confidence            99999999 66555444

>TIGR03049 PS_I_psaK photosystem I reaction center subunit PsaK

Probab=97.70  E-value=2.1e-05  Score=58.00  Aligned_cols=67  Identities=31%  Similarity=0.480  Sum_probs=48.6

Q ss_pred             cCC--CCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhh
Q 031508           59 ELS--TPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSI  136 (158)
Q Consensus        59 d~~--tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsi  136 (158)
                      .|+  ..+||.+|+.+++++||+..   |..|+.-+ +|..+                      -=-||++.++||..|+
T Consensus        10 ~Wsp~vaiIMI~cNilai~igk~~I---~~p~~Gp~-lP~~~----------------------~f~g~~~~~lLat~s~   63 (81)
T TIGR03049        10 TWSPKVAIIMILCNVLAIAIGRYTI---QYPNVGPK-LPNSA----------------------FFGGFGLPELLATTSF   63 (81)
T ss_pred             CcCccchhhhhHHHHHHHHHHHHHH---cCCCCCCC-CCChh----------------------hhCCCCHHHHHHHhhh
Confidence            565  47899999999999999988   33333222 33211                      1138999999999999


Q ss_pred             hHHHhhh-hhhhccCC
Q 031508          137 GHIVAYY-ILATSSNG  151 (158)
Q Consensus       137 GHiIg~~-iLAt~sng  151 (158)
                      |||+|++ ||.=++-|
T Consensus        64 GHilG~G~ILGL~~~G   79 (81)
T TIGR03049        64 GHILGVGAILGLANLG   79 (81)
T ss_pred             HHHHHHHHHhhhhhhc
Confidence            9999999 66555444

Members of this protein family are the PsaK of the photosystem I reaction center. Photosystems I and II occur together in the same sets of organisms. Photosystem I uses light energy to transfer electrons from plastocyanin to ferredoxin, while photosystem II uses light energy to split water and releases molecular oxygen.

>PRK13214 photosystem I reaction center subunit X; Reviewed

Probab=97.11  E-value=0.00016  Score=53.99  Aligned_cols=67  Identities=28%  Similarity=0.374  Sum_probs=48.4

Q ss_pred             cCCC--CeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhh
Q 031508           59 ELST--PLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSI  136 (158)
Q Consensus        59 d~~t--nlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsi  136 (158)
                      .|++  .+||.+|+.+.+++||+..   |..|+.-+ +|..+                      -=-||.+-++||..|+
T Consensus        15 ~Wsp~vaiIMI~cNilai~igk~~I---~~p~~Gp~-lP~~~----------------------~f~g~g~~~lLat~sf   68 (86)
T PRK13214         15 EWSPKVALVMIICNIIAIAFGKATI---KYPNVGPA-LPSAN----------------------FFGGMGLGALLGTTSF   68 (86)
T ss_pred             CcCchhHHHHHHHHHHHHHHHHHHh---cCCCCCCC-CCChh----------------------hhCCCCHHHHHHHhhH
Confidence            5764  6899999999999999988   33333222 33211                      0138999999999999


Q ss_pred             hHHHhhh-hhhhccCC
Q 031508          137 GHIVAYY-ILATSSNG  151 (158)
Q Consensus       137 GHiIg~~-iLAt~sng  151 (158)
                      |||+|++ ||.=++-|
T Consensus        69 GHilG~G~ILGL~~~G   84 (86)
T PRK13214         69 GHILGAGAILGLANLG   84 (86)
T ss_pred             HHHHHHHHHHhhhhhc
Confidence            9999999 66655544

>PRK13216 photosystem I reaction center subunit X-like protein; Reviewed

Probab=95.91  E-value=0.003  Score=47.64  Aligned_cols=69  Identities=20%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             cCCC--CeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhh
Q 031508           59 ELST--PLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSI  136 (158)
Q Consensus        59 d~~t--nlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsi  136 (158)
                      .|++  .+||.+|+.+++++||+..   |..|+.-+ +|..                    +.+-=.||.+..+||--|+
T Consensus        18 ~Wsp~va~IMI~cNllai~ig~~~I---~~p~~Gp~-lP~p--------------------~~~~F~g~g~~~lLat~sf   73 (91)
T PRK13216         18 TWNWTGTPIIIGSCLLVLLIAGRSI---RYPHVGPK-MPLP--------------------FPSLFNNPSVATFLAAMSF   73 (91)
T ss_pred             CcCcchhHHHHHHHHHHHHHHHHHh---cCCCCCCC-CCcc--------------------chhhccCCCHHHHHHHhHH
Confidence            5654  7899999999999999988   33333222 2320                    0011148999999999999


Q ss_pred             hHHHhhh-hhhhccCC
Q 031508          137 GHIVAYY-ILATSSNG  151 (158)
Q Consensus       137 GHiIg~~-iLAt~sng  151 (158)
                      |||+|++ ||.=++-|
T Consensus        74 GHIlG~G~ILGL~~~G   89 (91)
T PRK13216         74 GHIIGVAAVLGLTNLG   89 (91)
T ss_pred             HHHHHHHHHHhhhhcc
Confidence            9999999 77655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
2wsc_G	167	Improved Model Of Plant Photosystem I Length = 167		2e-49
3lw5_G	95	Improved Model Of Plant Photosystem I Length = 95		1e-46
2o01_G	95	The Structure Of A Plant Photosystem I Supercomplex		7e-46
2wsf_K	131	Improved Model Of Plant Photosystem I Length = 131		4e-06
2wsc_K	131	Improved Model Of Plant Photosystem I Length = 131		8e-06

>pdb|2WSC|G Chain G, Improved Model Of Plant Photosystem I Length = 167

Iteration: 1
 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/133 (73%), Positives = 106/133 (79%), Gaps = 2/133 (1%)
Query: 26  SFQGLRPLNTRAKTPLPKLATSAKRNSFG-GIKAELSTPLVISLSTGLSLFLGRFVFFNF 84
           SF GLRPL     +     + S          +AELS  LVISLSTGLSLFLGRFVFFNF
Sbjct: 36  SFSGLRPLKLNISSNNSSSSLSMSSARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNF 95
Query: 85  QRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 144
           QREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI
Sbjct: 96  QRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 154
Query: 145 LATSSNGYDPKFF 157
           LAT+SNGYDP FF
Sbjct: 155 LATASNGYDPSFF 167

>pdb|3LW5|G Chain G, Improved Model Of Plant Photosystem I Length = 95

Iteration: 1
 Score =  181 bits (460), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/96 (90%), Positives = 92/96 (95%), Gaps = 1/96 (1%)
Query: 62  TPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSND 121
           + LVISLSTGLSLFLGRFVFFNFQRENVAKQ +PEQNG+THFEAGD RAKEYVSLLKSND
Sbjct: 1   SALVISLSTGLSLFLGRFVFFNFQRENVAKQ-VPEQNGLTHFEAGDTRAKEYVSLLKSND 59
Query: 122 PVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 157
           PVGFNIVDVLAWGSIGH+VAYYILAT+SNGYDP FF
Sbjct: 60  PVGFNIVDVLAWGSIGHVVAYYILATTSNGYDPAFF 95

>pdb|2O01|G Chain G, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 95

Iteration: 1
 Score =  179 bits (453), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 86/94 (91%), Positives = 91/94 (96%), Gaps = 1/94 (1%)
Query: 64  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPV 123
           LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPV
Sbjct: 3   LVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPV 61
Query: 124 GFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 157
           GFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct: 62  GFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 95

>pdb|2WSF|K Chain K, Improved Model Of Plant Photosystem I Length = 131

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 23/123 (18%)
Query: 27  FQGLRPLNT-RAKTPLPKLATSAKRNSFGGIKAEL---STPLVISLSTGLSLFLGRFVFF 82
           F GLR  ++ R+   LP L    +R    GI+ +    ST L++  +T L LF GRF   
Sbjct: 14  FHGLRTYSSPRSMATLPSL----RRRRSQGIRCDYIGSSTNLIMVTTTTLMLFAGRF--- 66
Query: 83  NFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAY 142
                     GL             + A+E  S L++ DP GF + D LA G++GHI+  
Sbjct: 67  ----------GLAPSANRKATAGLKLEARE--SGLQTGDPAGFTLADTLACGAVGHIMGV 114
Query: 143 YIL 145
            I+
Sbjct: 115 GIV 117

>pdb|2WSC|K Chain K, Improved Model Of Plant Photosystem I Length = 131

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 23/123 (18%)
Query: 27  FQGLRPLNT-RAKTPLPKLATSAKRNSFGGIKAEL---STPLVISLSTGLSLFLGRFVFF 82
           F GLR  ++ R+   LP L    +R    GI+ +    ST L++  +T L LF GRF   
Sbjct: 14  FHGLRTYSSPRSMATLPSL----RRRRSQGIRCDYIGSSTNLIMVTTTTLMLFAGRF--- 66
Query: 83  NFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAY 142
                     GL             + A+E  S +++ DP GF + D LA G++GHI+  
Sbjct: 67  ----------GLAPSANRKATAGLKLEARE--SGIQTGDPAGFTLADTLACGAVGHIMGV 114
Query: 143 YIL 145
            I+
Sbjct: 115 GIV 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
2wsc_G	167	Photosystem I reaction center subunit V, chloropla	4e-53
2wsc_K	131	Photosystem I reaction center subunit PSAK, chloro	2e-25

>2wsc_G Photosystem I reaction center subunit V, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_G* 2wsf_G* 2o01_G* 3lw5_G* Length = 167

 Score =  165 bits (417), Expect = 4e-53
 Identities = 97/157 (61%), Positives = 108/157 (68%), Gaps = 2/157 (1%)

Query: 2   AASSSLFTPSTITVRKHQISPSSISFQGLRPLNTRAKTPLPKLATS-AKRNSFGGIKAEL 60
             +           +         SF GLRPL     +     + S +        +AEL
Sbjct: 12  LLAPCSSKQPQPQQQHQHQQLKCKSFSGLRPLKLNISSNNSSSSLSMSSARRSMTCRAEL 71

Query: 61  STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSN 120
           S  LVISLSTGLSLFLGRFVFFNFQREN+AK  +PEQNG++HFEAGD RAKEYVSLLKSN
Sbjct: 72  SPSLVISLSTGLSLFLGRFVFFNFQRENMAK-QVPEQNGMSHFEAGDTRAKEYVSLLKSN 130

Query: 121 DPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 157
           DPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct: 131 DPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167

>2wsc_K Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_K* 2wsf_K* 3lw5_K* Length = 131

 Score = 93.4 bits (231), Expect = 2e-25
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 21/119 (17%)

Query: 26  SFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAEL---STPLVISLSTGLSLFLGRFVFF 82
            F GLR  ++           S +R    GI+ +    ST L++  +T L LF GRF   
Sbjct: 13  QFHGLRTYSSPRSM---ATLPSLRRRRSQGIRCDYIGSSTNLIMVTTTTLMLFAGRFGL- 68

Query: 83  NFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVA 141
                       P  N         ++ +   S +++ DP GF + D LA G++GHI+ 
Sbjct: 69  -----------APSANRKAT---AGLKLEARESGIQTGDPAGFTLADTLACGAVGHIMG 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
2wsc_G	167	Photosystem I reaction center subunit V, chloropla	100.0
2wsc_K	131	Photosystem I reaction center subunit PSAK, chloro	99.97
1jb0_K	83	Photosystem 1 reaction centre subunit X; membrane	98.25

>2wsc_G Photosystem I reaction center subunit V, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_G* 2wsf_G* 2o01_G* 3lw5_G*

Probab=100.00  E-value=4.1e-68  Score=424.99  Aligned_cols=145  Identities=70%  Similarity=1.054  Sum_probs=94.6

Q ss_pred             ccccccccccCCCCccccccccCCCCCCCCCcc--cccccccCccceeeecCCCCeEEeehhHHHhhhhccccchhhhhh
Q 031508           11 STITVRKHQISPSSISFQGLRPLNTRAKTPLPK--LATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQREN   88 (158)
Q Consensus        11 ~~~~~~~~~~~p~~~sF~Glr~~~~~~~~~~~~--~~~~~kr~~~~~vrad~~tnlIis~ST~l~LflGRFvf~p~qR~n   88 (158)
                      ++.+++|||++|+..||+||||..+..+...++  ++++++|+. ++||||+++|||||+||+++||+|||||+||||||
T Consensus        21 ~~~~~~~~~~~~~~~~f~GLrp~~~~~~~~~~~~~~~~~~~r~a-~~vra~~~tnlIIs~STal~LflGRFvflP~qR~n   99 (167)
T 2wsc_G           21 PQPQQQHQHQQLKCKSFSGLRPLKLNISSNNSSSSLSMSSARRS-MTCRAELSPSLVISLSTGLSLFLGRFVFFNFQREN   99 (167)
T ss_dssp             -----------------------------------------------------CCCHHHHHHHHHHHTTTTTCSSSSSSC
T ss_pred             CCchhhhhccCCCcccccccccCCCCCCcccccccccccccccc-ceeEecCCCcEEEEhhhHHHHHHhhheechhhHhh
Confidence            456788999999999999999977655433333  333444544 59999999999999999999999999999999999


Q ss_pred             hhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhhhhhhccCCCCCCCC
Q 031508           89 VAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF  157 (158)
Q Consensus        89 v~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~iLAt~sngy~p~~f  157 (158)
                      ++|| +|+|||++|||+||.|+||++++||||||||||||||||||||||||||+||||+||||||+||
T Consensus       100 v~kq-~P~qnG~t~feagD~ra~e~~s~l~TnDPAGFtiVDVLAwGSlGHiIg~~iLAt~sngy~p~~f  167 (167)
T 2wsc_G          100 MAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF  167 (167)
T ss_dssp             STTS-CSSSSSCCSCCCSSCCCCCSSCCCTTSSGGGSTTHHHHTTTSSSCSCSSCCSSCSSSCCCCCCC
T ss_pred             hhhc-CcccCCceeeecchhHHHHHhhhcccCCCCcchHHHHHHhhhHHHHHHHhhhhhccCCCCcccC
Confidence            9999 9999999999999999999999999999999999999999999999999999999999999998

>2wsc_K Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_K* 2wsf_K* 3lw5_K*

Probab=99.97  E-value=6.6e-34  Score=220.90  Aligned_cols=113  Identities=33%  Similarity=0.516  Sum_probs=65.7

Q ss_pred             CCCccccccccCCCCCCCCCcccccccccCccceeeecC---CCCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccC
Q 031508           22 PSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAEL---STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQN   98 (158)
Q Consensus        22 p~~~sF~Glr~~~~~~~~~~~~~~~~~kr~~~~~vrad~---~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qn   98 (158)
                      .|+|||+|||+.+++++..+.++.  ++|+. +++|||+   ++|+||++||.++|++|||+|+|+||+|. ++|.+   
T Consensus         9 ~~~p~f~glr~~~~~~~~~~~~~~--~~r~~-~~~r~~~~gs~valIMi~~n~laLaiGRf~i~p~q~~~~-~~Gp~---   81 (131)
T 2wsc_K            9 TSVPQFHGLRTYSSPRSMATLPSL--RRRRS-QGIRCDYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKA-TAGLK---   81 (131)
T ss_dssp             -------------------------------------CCTTTTTTTTHHHHHHHHHTTTGGGGTTCSCCSC-CSSSS---
T ss_pred             ccCcccccccccCCcccccccccc--ccccc-eeeEeeecCCCccEEEehhHHHHHHHHHHhcchhhhccC-CCCCC---
Confidence            468999999998777655544433  23333 5999998   79999999999999999999999988885 44432   


Q ss_pred             CceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhh-hhhhccCCC
Q 031508           99 GVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY-ILATSSNGY  152 (158)
Q Consensus        99 g~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~-iLAt~sngy  152 (158)
                          ++.       .+++|++|||+|||++|||||||+|||||++ ||.=.+-|.
T Consensus        82 ----lp~-------~~~~~~s~dpaGF~l~dvLA~gSlGHIIG~GiILGL~~~G~  125 (131)
T 2wsc_K           82 ----LEA-------RESGIQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGV  125 (131)
T ss_dssp             ----SCC-------CCSSCSCCCTHHHHTTHHHHTTSSSTTTSSSCCCSSCTTCC
T ss_pred             ----CCc-------cccccccCCCCCCCHHHHHHHhhHHHHHHHHHHHcccccCc
Confidence                222       2489999999999999999999999999998 555444343

>1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 PDB: 3pcq_K*

Probab=98.25  E-value=1.6e-07  Score=68.31  Aligned_cols=67  Identities=28%  Similarity=0.377  Sum_probs=35.3

Q ss_pred             CCCeEEeehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHH
Q 031508           61 STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIV  140 (158)
Q Consensus        61 ~tnlIis~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiI  140 (158)
                      .+++||.+|+.+++++|||..   |..|+.-+ +|.         .           .++=+.||++.++||..|+||||
T Consensus        14 ~v~iIMI~cN~lai~igk~~I---~~~~~Gp~-lP~---------~-----------~~~~f~g~~~~~lLat~S~GHIl   69 (83)
T 1jb0_K           14 SVGLVVILCNLFAIALGRYAI---QSRGKGPG-LPI---------A-----------LPALFEGFGLPELLATTSFGHLL   69 (83)
T ss_dssp             ------CHHHHHHHHHHHC-C---CCSSCCSC-C-------------------------------CCTTGGGHHHHHHHH
T ss_pred             ccceeehhHHHHHHHHHHHHH---cCCCCCCC-CCc---------c-----------chhccCCCCHHHHHHHhhHHHHH
Confidence            468999999999999999998   21111111 111         0           12236899999999999999999


Q ss_pred             hhh-hhhhccCC
Q 031508          141 AYY-ILATSSNG  151 (158)
Q Consensus       141 g~~-iLAt~sng  151 (158)
                      |++ ||.=++-|
T Consensus        70 G~G~ILGL~~~G   81 (83)
T 1jb0_K           70 AAGVVSGLQYAG   81 (83)
T ss_dssp             HHHHTTCC----
T ss_pred             HHHHHHhhhhcc
Confidence            998 66544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1jb0k_	58	Photosystem I reaction center subunit X, PsaK {Syn	84.51

>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}

class: Membrane and cell surface proteins and peptides
fold: Photosystem I reaction center subunit X, PsaK
superfamily: Photosystem I reaction center subunit X, PsaK
family: Photosystem I reaction center subunit X, PsaK
domain: Photosystem I reaction center subunit X, PsaK
species: Synechococcus elongatus [TaxId: 32046]

Probab=84.51  E-value=0.12  Score=33.76  Aligned_cols=54  Identities=28%  Similarity=0.364  Sum_probs=32.2

Q ss_pred             ehhHHHhhhhccccchhhhhhhhhcCCCccCCceeeeccchhhhhhhhccccCCCCCchhhHHHhhhhhhHHHhhh-hh
Q 031508           68 LSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY-IL  145 (158)
Q Consensus        68 ~ST~l~LflGRFvf~p~qR~nv~~qg~P~qng~t~~eagd~ra~e~~s~l~TnDPAGFtiVDVLAwGsiGHiIg~~-iL  145 (158)
                      +|+.+++++||+..   |..|+.-+ +|...-                    +==-||.+..+||--|+|||+|.+ ||
T Consensus         2 ~cN~lai~ig~~tI---~~p~~Gp~-lP~~~p--------------------~~fgg~g~~~lLat~s~GHilG~G~IL   56 (58)
T d1jb0k_           2 LCNLFAIALGRYAI---QSRGKGPG-LPIALP--------------------ALFEGFGLPELLATTSFGHLLAAGVVS   56 (58)
T ss_dssp             HHHHHHHHHHHC-C---CCSSCCSC-C-------------------------------CCTTGGGHHHHHHHHHHHHTT
T ss_pred             eehhHHHHHHHHHH---cCCCCCcC-CCccch--------------------hhccCCCHHHHHHHhhHHHHHhhhhhh
Confidence            46888999999988   33333332 343210                    001378888999999999999998 44