Citrus Sinensis ID: 031554

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS
Secondary Structure (PSIPRED)
ccccHHHcHHHHHHccccEEEEEccccccHHHHHHHHHHHccccEEEEEcccccccHHHHHHcccccccEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
EcccHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHcccEEEEcHHHHccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvtnpldyveplgkagasgFTFHVEISKDNWQELVQRIKSkgmrpgvalkpgtsveevyplveganPVEMVLVMtvepgfggqkfmpEMMDKVRSLrnrypsldievdgglgpsTIAEAASAGAncivagssvfgapepaHVISLMRKSVEDAQKNS
Flexible Loop (DISEMBL)
mvtnpldyveplgkagasGFTFHVEISKDNWQELVQRIKSkgmrpgvalkpgtsvEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS
Low Complexity Region (SEG)
MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS
Disordered region (IsUnstruct)
*******YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEM***VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP****V***************
Disordered Region (DISOPRED)
MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK*********
Disordered Region (DISEMBL)
MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK*********
Disordered Region (DISPRO)
MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q9SE42	228	Ribulose-phosphate 3-epim	yes	no	1.0	0.688	0.802	3e-71
Q96AT9	228	Ribulose-phosphate 3-epim	yes	no	0.974	0.671	0.525	9e-39
P46969	238	Ribulose-phosphate 3-epim	yes	no	0.929	0.613	0.553	1e-38
Q8VEE0	228	Ribulose-phosphate 3-epim	yes	no	0.974	0.671	0.512	3e-38
Q5R5Y2	228	Ribulose-phosphate 3-epim	yes	no	0.974	0.671	0.518	4e-38
Q755M2	239	Ribulose-phosphate 3-epim	yes	no	0.942	0.619	0.546	4e-37
Q6FL81	246	Ribulose-phosphate 3-epim	yes	no	0.961	0.613	0.529	4e-37
O14105	228	Ribulose-phosphate 3-epim	yes	no	0.968	0.666	0.525	2e-36
P65760	229	Ribulose-phosphate 3-epim	yes	no	0.917	0.628	0.401	4e-24
P65761	229	Ribulose-phosphate 3-epim	yes	no	0.917	0.628	0.401	4e-24

>sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1

 Score =  267 bits (682), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 126/157 (80%), Positives = 141/157 (89%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNP DYVEPL KAGASGFTFH+E+S+DNWQEL+Q IK+KGMRPGV+L+PGT VEEV+P
Sbjct: 72  MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFP 131

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVE  NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 132 LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA 191

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
           SAGANCIVAGSS+FGA EP  VIS +RKSVE +Q  S
Sbjct: 192 SAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1

>sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1

 Score =  159 bits (401), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 5/158 (3%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGTSVE + P
Sbjct: 72  MVSKPEQWVKPMAVAGANQYTFHLE-ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 130

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
               AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PSLDIEVDGG+GP T+ + A
Sbjct: 131 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 187

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
            AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct: 188 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPE1 PE=1 SV=1

 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/150 (55%), Positives = 107/150 (71%), Gaps = 4/150 (2%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV NP  +V+   K GA  FTFH E ++D    LV+ IKSKG++   A+KPGTSV+ ++ 
Sbjct: 82  MVENPEKWVDDFAKCGADQFTFHYEATQDPLH-LVKLIKSKGIKAACAIKPGTSVDVLFE 140

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           L   A  ++M LVMTVEPGFGGQKFM +MM KV +LR ++P L+I+VDGGLG  TI +AA
Sbjct: 141 L---APHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAA 197

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
            AGAN IVAG+SVF A +P  VIS M++ V
Sbjct: 198 KAGANVIVAGTSVFTAADPHDVISFMKEEV 227

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate (By similarity). Involved in the protective response to oxidative stress.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1

 Score =  157 bits (396), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/158 (51%), Positives = 114/158 (72%), Gaps = 5/158 (3%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGT+VE + P
Sbjct: 72  MVSRPEQWVKPMAVAGANQYTFHLE-ATENPGALIKDIRENGMKVGLAIKPGTTVEYLAP 130

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
               AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++P+LDIEVDGG+GP T+ + A
Sbjct: 131 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCA 187

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
            AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct: 188 EAGANMIVSGSAIMRSDDPRAVINLLRNVCSEAAQKRS 225

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1

 Score =  156 bits (395), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 5/158 (3%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV+ P  +V+P+  AGA+ + FH+E + +N   L++ I+  GM+ G+A+KPGTSVE + P
Sbjct: 72  MVSKPEQWVKPMAVAGANQYAFHLE-ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 130

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
               AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PSLDIEVDGG+GP T+ + A
Sbjct: 131 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 187

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
            AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct: 188 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPE1 PE=3 SV=1

 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 4/152 (2%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV  P  +V+   + GA  FTFH E +K N  ELV+ IKS+G+R   A+KP T V+ ++ 
Sbjct: 80  MVAEPEKWVDVFVENGADQFTFHYEATK-NPLELVKLIKSRGIRAACAIKPDTPVDVLFE 138

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           L   A  ++M LVMTVEPGFGGQKFMP+MM KV +LR ++P LDI+VDGGLG  TI  AA
Sbjct: 139 L---APYLDMALVMTVEPGFGGQKFMPDMMPKVAALREKFPQLDIQVDGGLGKETIPHAA 195

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152
            AGAN IVAG+SVF A +   VIS M+ +V D
Sbjct: 196 KAGANVIVAGTSVFAAADQKDVISYMKDNVRD 227

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPE1 PE=3 SV=1

 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 82/155 (52%), Positives = 104/155 (67%), Gaps = 4/155 (2%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV  P  +V    KAGA  FTFH E +KD    LV+ IK  G++   A+KPGT V+ ++ 
Sbjct: 85  MVEEPEKWVADFAKAGADQFTFHYEATKDPLS-LVKLIKENGIKAACAIKPGTPVDVLFE 143

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           L   A  ++M LVMTVEPGFGGQKFMP+MM KV +LR ++P ++I+VDGGLG  TI  AA
Sbjct: 144 L---APYLDMALVMTVEPGFGGQKFMPDMMPKVEALRTKFPHMNIQVDGGLGKETIGVAA 200

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155
            AGAN IVAG+SVF A +P  VIS M++ V    K
Sbjct: 201 KAGANVIVAGTSVFTASDPHEVISFMKEEVRKELK 235

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC31G5.05c PE=3 SV=1

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/156 (52%), Positives = 103/156 (66%), Gaps = 4/156 (2%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV  P  Y++ L  AGAS F FH E ++ + +E++ R   KGM  G ALKP T VE + P
Sbjct: 72  MVIEPERYIDQLADAGASLFCFHYEATEKH-EEIISRAHEKGMLVGCALKPKTPVEVILP 130

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
            VE    ++MVLVMTVEPG GGQ FMPE + KV  LR +YP+L++EVDGGL   T+  AA
Sbjct: 131 FVE---KLDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLKTVDAAA 187

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156
            AGAN IVAG++VF A  P  VIS +R SV  AQ+ 
Sbjct: 188 DAGANVIVAGTAVFHAQSPEEVISGLRNSVMKAQET 223

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe PE=3 SV=1

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 99/152 (65%), Gaps = 8/152 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           M+ NP  +  P  +AGA   TFH E + DN   + + I++ G + G+++KPGT +E   P
Sbjct: 71  MIDNPDRWAPPYAEAGAYNVTFHAE-ATDNPVGVARDIRAAGAKAGISVKPGTPLE---P 126

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTI 116
            ++     + +LVM+VEPGFGGQ+F+PE++ KVR++R        ++ +E+DGG+   TI
Sbjct: 127 YLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTI 186

Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148
            +AA AG +C VAGS+V+GA +PA  ++ +R+
Sbjct: 187 EQAAEAGVDCFVAGSAVYGADDPAAAVAALRR 218

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Mycobacterium tuberculosis (taxid: 1773)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=rpe PE=3 SV=1

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 99/152 (65%), Gaps = 8/152 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           M+ NP  +  P  +AGA   TFH E + DN   + + I++ G + G+++KPGT +E   P
Sbjct: 71  MIDNPDRWAPPYAEAGAYNVTFHAE-ATDNPVGVARDIRAAGAKAGISVKPGTPLE---P 126

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTI 116
            ++     + +LVM+VEPGFGGQ+F+PE++ KVR++R        ++ +E+DGG+   TI
Sbjct: 127 YLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTI 186

Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148
            +AA AG +C VAGS+V+GA +PA  ++ +R+
Sbjct: 187 EQAAEAGVDCFVAGSAVYGADDPAAAVAALRR 218

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Mycobacterium bovis (taxid: 1765)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
255536945	226	ribulose-5-phosphate-3-epimerase, putati	1.0	0.694	0.866	2e-75
225452134	222	PREDICTED: ribulose-phosphate 3-epimeras	0.980	0.693	0.889	3e-75
296090234	291	unnamed protein product [Vitis vinifera]	0.980	0.529	0.889	8e-75
224060236	226	predicted protein [Populus trichocarpa]	1.0	0.694	0.866	1e-74
356571509	228	PREDICTED: ribulose-phosphate 3-epimeras	0.993	0.684	0.858	9e-73
388509346	157	unknown [Lotus japonicus]	0.993	0.993	0.852	2e-72
255629039	228	unknown [Glycine max]	0.993	0.684	0.852	2e-72
388496054	226	unknown [Lotus japonicus]	0.993	0.690	0.852	3e-72
449441680	226	PREDICTED: ribulose-phosphate 3-epimeras	1.0	0.694	0.828	3e-72
351723811	228	uncharacterized protein LOC100527490 [Gl	1.0	0.688	0.853	3e-71

>gi|255536945|ref|XP_002509539.1| ribulose-5-phosphate-3-epimerase, putative [Ricinus communis] gi|223549438|gb|EEF50926.1| ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 136/157 (86%), Positives = 149/157 (94%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNP+DYVEPLGKAGASGFTFHVE S+DNW +L+QRIKSKGMRPGVALKPGTS+EEVYP
Sbjct: 70  MVTNPIDYVEPLGKAGASGFTFHVEASRDNWADLIQRIKSKGMRPGVALKPGTSIEEVYP 129

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVE  NPVEMVLVMTVEPGFGGQKFMP MM+KV++LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 130 LVECENPVEMVLVMTVEPGFGGQKFMPTMMEKVKTLRKKYPSLDIEVDGGLGPSTIDLAA 189

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
           SAGANCIVAGSSVFGAPEPAHVISLM+KSV++AQ+NS
Sbjct: 190 SAGANCIVAGSSVFGAPEPAHVISLMKKSVQEAQENS 226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452134|ref|XP_002263010.1| PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [Vitis vinifera]

 Score =  285 bits (730), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 137/154 (88%), Positives = 147/154 (95%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNPLDYVEPLGKAGASGFTFHVE+SK+NWQELV+RI+SKGMRPGVALKPGT +EEVYP
Sbjct: 69  MVTNPLDYVEPLGKAGASGFTFHVEVSKENWQELVERIRSKGMRPGVALKPGTPIEEVYP 128

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVEG NPVEMVLVMTVEPGFGGQKFMPEMMDKVR+LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 129 LVEGENPVEMVLVMTVEPGFGGQKFMPEMMDKVRALRKKYPSLDIEVDGGLGPSTIDMAA 188

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154
           SAGANCIVAGSSVFGAP+P  VISL+RKSVE+AQ
Sbjct: 189 SAGANCIVAGSSVFGAPKPEQVISLLRKSVEEAQ 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090234|emb|CBI40053.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (727), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 137/154 (88%), Positives = 147/154 (95%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNPLDYVEPLGKAGASGFTFHVE+SK+NWQELV+RI+SKGMRPGVALKPGT +EEVYP
Sbjct: 138 MVTNPLDYVEPLGKAGASGFTFHVEVSKENWQELVERIRSKGMRPGVALKPGTPIEEVYP 197

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVEG NPVEMVLVMTVEPGFGGQKFMPEMMDKVR+LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 198 LVEGENPVEMVLVMTVEPGFGGQKFMPEMMDKVRALRKKYPSLDIEVDGGLGPSTIDMAA 257

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154
           SAGANCIVAGSSVFGAP+P  VISL+RKSVE+AQ
Sbjct: 258 SAGANCIVAGSSVFGAPKPEQVISLLRKSVEEAQ 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060236|ref|XP_002300099.1| predicted protein [Populus trichocarpa] gi|118488638|gb|ABK96131.1| unknown [Populus trichocarpa] gi|222847357|gb|EEE84904.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 136/157 (86%), Positives = 147/157 (93%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNPLDYVEPLGKAGASGFTFHVE+S+DNW +LVQRIKSKGMRPGV+LKPGT +EEVYP
Sbjct: 70  MVTNPLDYVEPLGKAGASGFTFHVEVSRDNWGDLVQRIKSKGMRPGVSLKPGTPIEEVYP 129

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVEG NPVEMVLVMTVEPGFGGQKFMPE MDKVR+LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 130 LVEGENPVEMVLVMTVEPGFGGQKFMPETMDKVRTLRKKYPSLDIEVDGGLGPSTIDMAA 189

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
           SAGANCIVAGSSVFGAP+ A VISL+RKSVE+ QKN+
Sbjct: 190 SAGANCIVAGSSVFGAPDSAQVISLLRKSVEEVQKNN 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571509|ref|XP_003553919.1| PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform [Glycine max]

 Score =  277 bits (709), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 134/156 (85%), Positives = 140/156 (89%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNPLDYVEPL KAGASGFTFHVE SKDNW+EL+QRIKS GM PGVALKPGT +EEVYP
Sbjct: 70  MVTNPLDYVEPLAKAGASGFTFHVETSKDNWEELIQRIKSHGMTPGVALKPGTPIEEVYP 129

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVE  NPVEMVLVMTVEPGFGGQKFMPEMMDKVR LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 130 LVEAGNPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKKYPSLDIEVDGGLGPSTIDVAA 189

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156
           SAGANCIVAGSSVFGAPEP  VISL+R SVE AQ+ 
Sbjct: 190 SAGANCIVAGSSVFGAPEPVQVISLLRNSVEKAQQT 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509346|gb|AFK42739.1| unknown [Lotus japonicus]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/156 (85%), Positives = 142/156 (91%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNPLDYVEPLGKAGASGFTFHVE SKDNW+EL+QRIKS+GM+PGVALKPGT +E+VYP
Sbjct: 1   MVTNPLDYVEPLGKAGASGFTFHVEASKDNWKELIQRIKSQGMKPGVALKPGTPIEDVYP 60

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVE  NPVEMVLVMTV PGFGGQKFMPEMMDKVR LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 61  LVEAENPVEMVLVMTVAPGFGGQKFMPEMMDKVRILRKKYPSLDIEVDGGLGPSTIDMAA 120

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156
           SAGANCIVAGSSVFGAPEPA VISL+R SVE  Q+ 
Sbjct: 121 SAGANCIVAGSSVFGAPEPAQVISLLRNSVEKGQQT 156

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629039|gb|ACU14864.1| unknown [Glycine max]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/156 (85%), Positives = 140/156 (89%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNPLDYVEPL KAGASGFTFHVE SKDNW+EL+QRIKS GM PGVALKPGT +EEVYP
Sbjct: 70  MVTNPLDYVEPLAKAGASGFTFHVETSKDNWEELIQRIKSHGMTPGVALKPGTPIEEVYP 129

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVE  NPVEMVLVMTVEPGFGGQKFMPEMMDKVR LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 130 LVEAGNPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKKYPSLDIEVDGGLGPSTIDVAA 189

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156
           SAGANCIVAGSSVFGAPEP  VISL++ SVE AQ+ 
Sbjct: 190 SAGANCIVAGSSVFGAPEPVQVISLLKNSVEKAQQT 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496054|gb|AFK36093.1| unknown [Lotus japonicus]

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/156 (85%), Positives = 141/156 (90%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNPLDYVEPLGKAGASGFTFHVE SKDNW+EL+QRIKS+GM PGVALKPGT +E+VYP
Sbjct: 70  MVTNPLDYVEPLGKAGASGFTFHVEASKDNWKELIQRIKSQGMEPGVALKPGTPIEDVYP 129

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVE  NPVEMVLVMTV PGFGGQKFMPEMMDKVR LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 130 LVEAENPVEMVLVMTVAPGFGGQKFMPEMMDKVRILRKKYPSLDIEVDGGLGPSTIDMAA 189

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156
           SAGANCIVAGSSVFGAPEPA VISL+R SVE  Q+ 
Sbjct: 190 SAGANCIVAGSSVFGAPEPAQVISLLRNSVEKGQQT 225

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441680|ref|XP_004138610.1| PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [Cucumis sativus]

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/157 (82%), Positives = 144/157 (91%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNPLDYVEPL KAGASGFTFHVE+SKDNWQ+L+Q IKSKGM+ GVALKPGT +EEVYP
Sbjct: 70  MVTNPLDYVEPLAKAGASGFTFHVEVSKDNWQQLIQEIKSKGMKSGVALKPGTPIEEVYP 129

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVE  NPV++VLVMTVEPGFGGQKFMPE MDKVR+LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 130 LVESENPVDLVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPSLDIEVDGGLGPSTIDAAA 189

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
           SAGANCIVAGSSVFGAPEP+ VIS++R SVE+AQ+ S
Sbjct: 190 SAGANCIVAGSSVFGAPEPSEVISILRNSVEEAQQKS 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723811|ref|NP_001236780.1| uncharacterized protein LOC100527490 [Glycine max] gi|255632468|gb|ACU16584.1| unknown [Glycine max]

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 134/157 (85%), Positives = 139/157 (88%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNPLDYVEPL KAGASGFTFHVE SKDNW+EL+QRIKS GM PGVALKPGT V EVYP
Sbjct: 70  MVTNPLDYVEPLAKAGASGFTFHVETSKDNWKELIQRIKSHGMIPGVALKPGTPVGEVYP 129

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVE  NPVEMVLVMTVEPGFGGQKFM E MDKVR LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 130 LVEAENPVEMVLVMTVEPGFGGQKFMAETMDKVRILRKKYPSLDIEVDGGLGPSTIDVAA 189

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
           SAGANCIVAGSSVFGAPEPA VISL+R SVE AQ+ S
Sbjct: 190 SAGANCIVAGSSVFGAPEPAQVISLLRSSVEKAQQTS 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2038456	227	AT1G63290 [Arabidopsis thalian	1.0	0.691	0.796	1.5e-65
TAIR|locus:2082349	225	AT3G01850 [Arabidopsis thalian	0.980	0.684	0.805	1.1e-64
CGD|CAL0002810	230	orf19.7108 [Candida albicans (	0.949	0.647	0.522	9.9e-39
UNIPROTKB|G5E6S3	187	RPE "Uncharacterized protein"	0.974	0.818	0.537	5.5e-38
UNIPROTKB|C9J6A7	159	RPE "Ribulose-phosphate 3-epim	0.974	0.962	0.525	1.9e-37
UNIPROTKB|C9JPQ7	160	RPE "Ribulose-phosphate 3-epim	0.974	0.956	0.525	1.9e-37
UNIPROTKB|Q96AT9	228	RPE "Ribulose-phosphate 3-epim	0.974	0.671	0.525	1.9e-37
UNIPROTKB|F6V404	228	RPE "Ribulose-phosphate 3-epim	0.974	0.671	0.525	3e-37
UNIPROTKB|F1SSS3	187	LOC100737311 "Uncharacterized	0.974	0.818	0.525	3e-37
UNIPROTKB|F1SSS5	190	LOC100737311 "Uncharacterized	0.974	0.805	0.525	3e-37

TAIR|locus:2038456 AT1G63290 [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 125/157 (79%), Positives = 144/157 (91%)

Query:     1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
             MVTNP+DYV+ + KAGASGFTFHVE++++NWQELV++IK+ GMRPGVALKPGT VE+VYP
Sbjct:    71 MVTNPMDYVDQMAKAGASGFTFHVEVAQENWQELVKKIKAAGMRPGVALKPGTPVEQVYP 130

Query:    61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
             LVEG NPVEMVLVMTVEPGFGGQKFMP MMDKVR+LRN+YP+LDIEVDGGLGPSTI  AA
Sbjct:   131 LVEGTNPVEMVLVMTVEPGFGGQKFMPSMMDKVRALRNKYPTLDIEVDGGLGPSTIDAAA 190

Query:   121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
             +AGANCIVAGSSVFGAP+P  VISL+R SVE AQ ++
Sbjct:   191 AAGANCIVAGSSVFGAPKPGDVISLLRASVEKAQPST 227

GO:0003824 "catalytic activity" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2082349 AT3G01850 [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 124/154 (80%), Positives = 140/154 (90%)

Query:     1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
             MVTNP+DYV  + KAGASGFTFHVE+++DNWQ+LV++IKS GMRPGVALKPGT VE+VYP
Sbjct:    69 MVTNPMDYVAQMAKAGASGFTFHVEVAQDNWQQLVEKIKSTGMRPGVALKPGTPVEQVYP 128

Query:    61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
             LVEG  PVEMVLVMTVEPGFGGQKFMP+MMDKVR+LR +YP+LDI+VDGGLGPSTI  AA
Sbjct:   129 LVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALRQKYPTLDIQVDGGLGPSTIDTAA 188

Query:   121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154
             +AGANCIVAGSSVFGAPEP  VISL+R SVE AQ
Sbjct:   189 AAGANCIVAGSSVFGAPEPGDVISLLRTSVEKAQ 222

GO:0003824 "catalytic activity" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

CGD|CAL0002810 orf19.7108 [Candida albicans (taxid:5476)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 80/153 (52%), Positives = 111/153 (72%)

Query:     1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
             MV+ P +++E + KAG   +TFH E +KD    ++++IK  G++  +A+KP T VEEV+P
Sbjct:    76 MVSEPDEWIEEIAKAGGDSYTFHFEATKDP-ARVIKKIKEHGLKAAMAIKPKTPVEEVFP 134

Query:    61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
               E    ++MVLVMTVEPGFGGQKFMP+MM KV +LR +YP+LD++VDGGLG  TI  AA
Sbjct:   135 YAED---LDMVLVMTVEPGFGGQKFMPDMMPKVETLREKYPNLDVQVDGGLGKDTIQPAA 191

Query:   121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153
              AGAN IVAG+SVF   +P  V+  ++++V DA
Sbjct:   192 DAGANVIVAGTSVFKPEDPKPVVQYLKQTVADA 224

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

UNIPROTKB|G5E6S3 RPE "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 85/158 (53%), Positives = 114/158 (72%)

Query:     1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
             MV+ P  +V+P+  AGA+ +TFH+E + DN   L++ I+  GM+ G+A+KPGTSVE + P
Sbjct:    31 MVSRPEQWVKPMAVAGANQYTFHLEAT-DNPGALIKDIRENGMKVGLAIKPGTSVEYLAP 89

Query:    61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
                 AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PSLDIEVDGG+GP TI + A
Sbjct:    90 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCA 146

Query:   121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
              AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   147 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 184

GO:0046872 "metal ion binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

UNIPROTKB|C9J6A7 RPE "Ribulose-phosphate 3-epimerase" [Homo sapiens (taxid:9606)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 83/158 (52%), Positives = 114/158 (72%)

Query:     1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
             MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGTSVE + P
Sbjct:     4 MVSKPEQWVKPMAVAGANQYTFHLEAT-ENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 62

Query:    61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
                 AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PSLDIEVDGG+GP T+ + A
Sbjct:    63 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 119

Query:   121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
              AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   120 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 157

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0048029 "monosaccharide binding" evidence=IEA

UNIPROTKB|C9JPQ7 RPE "Ribulose-phosphate 3-epimerase" [Homo sapiens (taxid:9606)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 83/158 (52%), Positives = 114/158 (72%)

Query:     1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
             MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGTSVE + P
Sbjct:     4 MVSKPEQWVKPMAVAGANQYTFHLEAT-ENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 62

Query:    61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
                 AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PSLDIEVDGG+GP T+ + A
Sbjct:    63 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 119

Query:   121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
              AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   120 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 157

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0048029 "monosaccharide binding" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

UNIPROTKB|Q96AT9 RPE "Ribulose-phosphate 3-epimerase" [Homo sapiens (taxid:9606)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 83/158 (52%), Positives = 114/158 (72%)

Query:     1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
             MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGTSVE + P
Sbjct:    72 MVSKPEQWVKPMAVAGANQYTFHLEAT-ENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 130

Query:    61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
                 AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PSLDIEVDGG+GP T+ + A
Sbjct:   131 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 187

Query:   121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
              AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   188 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0048029 "monosaccharide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IDA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=EXP;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IDA;TAS

GO:0006098 "pentose-phosphate shunt" evidence=IDA;TAS

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|F6V404 RPE "Ribulose-phosphate 3-epimerase" [Canis lupus familiaris (taxid:9615)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 83/158 (52%), Positives = 114/158 (72%)

Query:     1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
             MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGT+VE + P
Sbjct:    72 MVSRPEQWVKPMAVAGANQYTFHLEAT-ENPGALIKDIRENGMKVGLAIKPGTTVEYLAP 130

Query:    61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
                 AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PSLDIEVDGG+GP TI + A
Sbjct:   131 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCA 187

Query:   121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
              AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   188 EAGANMIVSGSAIMRSDDPRSVINLLRNVCSEAAQKRS 225

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

UNIPROTKB|F1SSS3 LOC100737311 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 83/158 (52%), Positives = 114/158 (72%)

Query:     1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
             MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGT+VE + P
Sbjct:    31 MVSRPEQWVKPMAVAGANQYTFHLEAT-ENPGALIKDIRENGMKVGLAIKPGTTVEYLAP 89

Query:    61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
                 AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PSLDIEVDGG+GP TI + A
Sbjct:    90 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCA 146

Query:   121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
              AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   147 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 184

GO:0046872 "metal ion binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

UNIPROTKB|F1SSS5 LOC100737311 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 83/158 (52%), Positives = 114/158 (72%)

Query:     1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
             MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGT+VE + P
Sbjct:    34 MVSRPEQWVKPMAVAGANQYTFHLEAT-ENPGALIKDIRENGMKVGLAIKPGTTVEYLAP 92

Query:    61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
                 AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PSLDIEVDGG+GP TI + A
Sbjct:    93 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCA 149

Query:   121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
              AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   150 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 187

GO:0046872 "metal ion binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SE42	RPE1_ORYSJ	5, ., 1, ., 3, ., 1	0.8025	1.0	0.6885	yes	no
Q8VEE0	RPE_MOUSE	5, ., 1, ., 3, ., 1	0.5126	0.9745	0.6710	yes	no
P46969	RPE_YEAST	5, ., 1, ., 3, ., 1	0.5533	0.9299	0.6134	yes	no
O14105	RPE_SCHPO	5, ., 1, ., 3, ., 1	0.5256	0.9681	0.6666	yes	no
Q6FL81	RPE_CANGA	5, ., 1, ., 3, ., 1	0.5290	0.9617	0.6138	yes	no
Q96AT9	RPE_HUMAN	5, ., 1, ., 3, ., 1	0.5253	0.9745	0.6710	yes	no
Q5R5Y2	RPE_PONAB	5, ., 1, ., 3, ., 1	0.5189	0.9745	0.6710	yes	no
Q755M2	RPE_ASHGO	5, ., 1, ., 3, ., 1	0.5460	0.9426	0.6192	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.1.3.1	0.946
3rd Layer	5.1.3	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
PLN02334	229	PLN02334, PLN02334, ribulose-phosphate 3-epimerase	2e-90
PTZ00170	228	PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epime	4e-74
cd00429	211	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RP	3e-69
PRK05581	220	PRK05581, PRK05581, ribulose-phosphate 3-epimerase	4e-60
COG0036	220	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Car	1e-56
pfam00834	201	pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 ep	8e-48
TIGR01163	210	TIGR01163, rpe, ribulose-phosphate 3-epimerase	1e-47
PRK09722	229	PRK09722, PRK09722, allulose-6-phosphate 3-epimera	9e-32
PRK08745	223	PRK08745, PRK08745, ribulose-phosphate 3-epimerase	2e-30
PRK08883	220	PRK08883, PRK08883, ribulose-phosphate 3-epimerase	3e-30
PRK08005	210	PRK08005, PRK08005, epimerase; Validated	3e-14
PRK08091	228	PRK08091, PRK08091, ribulose-phosphate 3-epimerase	9e-05
COG0269	217	COG0269, SgbH, 3-hexulose-6-phosphate synthase and	9e-05
TIGR01334	277	TIGR01334, modD, putative molybdenum utilization p	1e-04
PRK14057	254	PRK14057, PRK14057, epimerase; Provisional	3e-04
cd01568	269	cd01568, QPRTase_NadC, Quinolinate phosphoribosyl	5e-04
cd04722	200	cd04722, TIM_phosphate_binding, TIM barrel protein	0.001
TIGR03128	206	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synth	0.001
pfam01729	169	pfam01729, QRPTase_C, Quinolinate phosphoribosyl t	0.003
cd00564	196	cd00564, TMP_TenI, Thiamine monophosphate synthase	0.004

>gnl|CDD|215192 PLN02334, PLN02334, ribulose-phosphate 3-epimerase

 Score =  262 bits (671), Expect = 2e-90
 Identities = 102/158 (64%), Positives = 118/158 (74%), Gaps = 2/158 (1%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVE-ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
           MVTNP DYV    KAGAS FTFH+E  S  +   L+Q+IKS GM+ GV L PGT VE V 
Sbjct: 73  MVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVE 132

Query: 60  PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA 119
           P+VE    V+MVLVM+VEPGFGGQ F+P MMDKVR+LR +YP LDIEVDGG+GPSTI +A
Sbjct: 133 PVVEKGL-VDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKA 191

Query: 120 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
           A AGAN IVAGS+VFGAP+ A VIS +R SVE A    
Sbjct: 192 AEAGANVIVAGSAVFGAPDYAEVISGLRASVEKAAVAV 229

Length = 229

>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase; Provisional

 Score =  221 bits (564), Expect = 4e-74
 Identities = 83/151 (54%), Positives = 111/151 (73%), Gaps = 1/151 (0%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV+NP  +V+   KAGAS FTFH+E ++D+ + + ++I+  GM+ GVA+KP T VE ++P
Sbjct: 73  MVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFP 132

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           L++    V+MVLVMTVEPGFGGQ FM +MM KVR LR RYP L+I+VDGG+   TI  AA
Sbjct: 133 LIDTDL-VDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAA 191

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
            AGAN IVAGSS+F A +    I L+R+SV+
Sbjct: 192 DAGANVIVAGSSIFKAKDRKQAIELLRESVQ 222

Length = 228

>gnl|CDD|238244 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)

 Score =  207 bits (530), Expect = 3e-69
 Identities = 73/151 (48%), Positives = 98/151 (64%), Gaps = 8/151 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV NP  Y+E   KAGA   TFH E + D+    +Q IK  GM+ GVAL PGT VE + P
Sbjct: 65  MVENPERYIEAFAKAGADIITFHAEAT-DHLHRTIQLIKELGMKAGVALNPGTPVEVLEP 123

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTI 116
            ++    V++VLVM+V PGFGGQKF+PE+++K+R LR   P    +L IEVDGG+   TI
Sbjct: 124 YLD---EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETI 180

Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMR 147
              A AGA+ +VAGS++FG+ + A  I  +R
Sbjct: 181 PLLAEAGADVLVAGSALFGSDDYAEAIKELR 211

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. Length = 211

>gnl|CDD|235515 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated

 Score =  185 bits (471), Expect = 4e-60
 Identities = 68/153 (44%), Positives = 96/153 (62%), Gaps = 8/153 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV NP  YV    KAGA   TFHVE + ++   L+Q IKS G++ G+ L P T +E +  
Sbjct: 69  MVENPDRYVPDFAKAGADIITFHVE-ASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLED 127

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPSTI 116
           +++    +++VL+M+V PGFGGQKF+PE+++K+R LR     R   + IEVDGG+    I
Sbjct: 128 VLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNI 184

Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
            E A AGA+  VAGS+VFGAP+    I  +R  
Sbjct: 185 KECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217

Length = 220

>gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

 Score =  176 bits (448), Expect = 1e-56
 Identities = 65/156 (41%), Positives = 96/156 (61%), Gaps = 7/156 (4%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV NP  Y+E   KAGA   TFH E ++      +Q IK  G++ G+ L P T +E + P
Sbjct: 69  MVENPDRYIEAFAKAGADIITFHAEATEHIH-RTIQLIKELGVKAGLVLNPATPLEALEP 127

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP---SLDIEVDGGLGPSTIA 117
           +++    V++VL+M+V PGFGGQKF+PE+++K+R LR        + IEVDGG+   TI 
Sbjct: 128 VLD---DVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIK 184

Query: 118 EAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153
           + A+AGA+  VAGS++FGA +    I  +R  +  A
Sbjct: 185 QLAAAGADVFVAGSALFGADDYKATIRELRGELLKA 220

Length = 220

>gnl|CDD|216142 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family

 Score =  153 bits (388), Expect = 8e-48
 Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 8/141 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV  P   +    +AGA   +FH E S D+    +Q IK  G + G+ L P T ++ +  
Sbjct: 65  MVEEPDRIIPDFAEAGADIISFHAEAS-DHPHRTIQLIKEAGAKAGLVLNPATPLDAIEY 123

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS----LDIEVDGGLGPSTI 116
           L++    +++VL+M+V PGFGGQ F+P ++ K+R +R           IEVDGG+    I
Sbjct: 124 LLD---DLDLVLLMSVNPGFGGQSFIPSVLPKIRKVRKMIDEGGLDTLIEVDGGVNLDNI 180

Query: 117 AEAASAGANCIVAGSSVFGAP 137
            + A AGA+ +VAGS+VFGAP
Sbjct: 181 PQIAEAGADVLVAGSAVFGAP 201

This enzyme catalyzes the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate. Length = 201

>gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase

 Score =  153 bits (388), Expect = 1e-47
 Identities = 61/151 (40%), Positives = 92/151 (60%), Gaps = 8/151 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV NP  Y+E   +AGA   T H E + ++   L+Q IK  G + G+ L P T +E +  
Sbjct: 64  MVENPDRYIEDFAEAGADIITVHPE-ASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEY 122

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR---NRY-PSLDIEVDGGLGPSTI 116
           ++     V++VL+M+V PGFGGQKF+P+ ++K+R +R   +    S+ IEVDGG+     
Sbjct: 123 VLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNA 179

Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMR 147
            E A AGA+ +VAGS++FGA +   VI  +R
Sbjct: 180 RELAEAGADILVAGSAIFGADDYKEVIRSLR 210

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants [Energy metabolism, Pentose phosphate pathway]. Length = 210

>gnl|CDD|236616 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional

 Score =  112 bits (283), Expect = 9e-32
 Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 11/138 (7%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVE-ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
           MVT+P DY++ L  AGA   T H E I+   ++ L+  I+  GM+ G+ L P T VE + 
Sbjct: 67  MVTDPQDYIDQLADAGADFITLHPETINGQAFR-LIDEIRRAGMKVGLVLNPETPVESIK 125

Query: 60  PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-----RNRYPSLDIEVDGGLGPS 114
             +     ++ + VMTV+PGF GQ F+PEM+DK+  L     RN    L IEVDG     
Sbjct: 126 YYIH---LLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYL-IEVDGSCNQK 181

Query: 115 TIAEAASAGANCIVAGSS 132
           T  +   AGA+  + G+S
Sbjct: 182 TYEKLMEAGADVFIVGTS 199

Length = 229

>gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional

 Score =  109 bits (274), Expect = 2e-30
 Identities = 61/160 (38%), Positives = 98/160 (61%), Gaps = 11/160 (6%)

Query: 1   MVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
           ++  P+D + P    AGA+  +FH E S+ +    +Q IKS G + G+ L P T V+   
Sbjct: 69  LMVEPVDRIVPDFADAGATTISFHPEASR-HVHRTIQLIKSHGCQAGLVLNPATPVD--- 124

Query: 60  PLVEGANP-VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD----IEVDGGLGPS 114
            +++   P +++VLVM+V PGFGGQ F+P  +DK+R++R +  +L     +E+DGG+   
Sbjct: 125 -ILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKAD 183

Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154
            I   A+AGA+  VAGS++F AP+ A VI+ MR +V   +
Sbjct: 184 NIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVAAVR 223

Length = 223

>gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional

 Score =  108 bits (272), Expect = 3e-30
 Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 9/159 (5%)

Query: 1   MVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
           ++  P+D + P   KAGAS  TFHVE S ++    +Q IK  G + GV L P T +  + 
Sbjct: 65  LMVKPVDRIIPDFAKAGASMITFHVEAS-EHVDRTLQLIKEHGCQAGVVLNPATPLHHLE 123

Query: 60  PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS----LDIEVDGGLGPST 115
            +++    V+++L+M+V PGFGGQ F+P  +DK+R++R         + +E+DGG+    
Sbjct: 124 YIMD---KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDN 180

Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154
           I E A AGA+  VAGS++FG P+   VI  MR  +   +
Sbjct: 181 IREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELAKVK 219

Length = 220

>gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated

 Score = 66.6 bits (162), Expect = 3e-14
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 4/134 (2%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV++P  ++  L          H E S  N  E++  I++ G + G+AL P T +     
Sbjct: 66  MVSSPQRWLPWLAAIRPGWIFIHAE-SVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           L   A  ++ +++MT EP   GQ+F+  M +KV   R  +P+ +   DGG+        A
Sbjct: 125 L---ALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLA 181

Query: 121 SAGANCIVAGSSVF 134
           +AGA  +V G ++F
Sbjct: 182 AAGAQHLVIGRALF 195

Length = 210

>gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 29/156 (18%), Positives = 68/156 (43%), Gaps = 10/156 (6%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEV 58
           MV +  +  +    AGA   T  VE    +    ++ +  +   +  G+ L P T +  +
Sbjct: 76  MVRDQFEVAKACVAAGADIVTLQVE-QTHDLALTIEWLAKQKTTVLIGLCLCPETPISLL 134

Query: 59  YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD----IEVDGGLGPS 114
            P ++    ++++ ++T++P  G +     ++D+V  + NR  +      I +DG +   
Sbjct: 135 EPYLD---QIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLE 191

Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
             +       + +V+GS++F   E    +   + S+
Sbjct: 192 LASYLKQHQIDWVVSGSALFSQGELKTTLKEWKSSL 227

Length = 228

>gnl|CDD|223347 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 82  GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAH 141
           G+ +  + ++K++ L +      + V GG+ P  I      GA+ ++ G ++ GA +PA 
Sbjct: 146 GKSWGEDDLEKIKKLSD--LGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAE 203

Query: 142 VISLMRKSVE 151
                ++ ++
Sbjct: 204 AARKFKEEID 213

Length = 217

>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 23/131 (17%)

Query: 20  FTFHVEISKDN--WQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE 77
           F  H     DN  W   + R+K                 E    VE     + + V+   
Sbjct: 162 FANHRTFLNDNFDWGGAIGRLKQTA-------------PERKITVEADTIEQALTVLQAS 208

Query: 78  PG-FGGQKFMPEMMDKVRSLRNRYPSLD----IEVDGGLGPSTIAEAASAGANCIVAGSS 132
           P      KF P+   ++  L  R    D    +   GG+ P  IA+   AG +  +  + 
Sbjct: 209 PDILQLDKFTPQ---QLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAP 265

Query: 133 VFGAPEPAHVI 143
            + AP    V 
Sbjct: 266 YYAAPCDIKVK 276

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown [Unknown function, General]. Length = 277

>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 46  GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYP 101
           G++L P T ++ + P++   + VE++ ++ V PG+G +    ++ ++V  L     ++  
Sbjct: 136 GISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKRE 192

Query: 102 SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
              I +DG L    +    + G + +V+GS++F
Sbjct: 193 GKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225

Length = 254

>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 84  KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137
              PE + +   L    P + +E  GG+    I   A  G + I  G+    AP
Sbjct: 209 NMSPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETGVDVISTGALTHSAP 262

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. Length = 269

>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 14  KAGASGFTFHVE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV 71
            AGA G   H           EL++ ++       V +K   + E      E A  V+ V
Sbjct: 82  AAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAG-VDEV 140

Query: 72  LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130
            +     G GG+  +P     +  L  R   + +   GG+  P   AEA + GA+ ++ G
Sbjct: 141 GLGNGGGGGGGRDAVPIADL-LLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVG 199

Query: 131 S 131
           S
Sbjct: 200 S 200

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200

>gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 105 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148
           + V GG+   TI +    G + ++ G ++  A +PA     +RK
Sbjct: 161 VAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRK 204

Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. Length = 206

>gnl|CDD|216667 pfam01729, QRPTase_C, Quinolinate phosphoribosyl transferase, C-terminal domain

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 84  KFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137
            F PE + + V  L  R   + +EV GG+    + E A  G + I  G+     P
Sbjct: 108 NFSPEEVREAVEELDERAGRVLLEVSGGITLDNVLEYAKTGVDVISVGALTHSVP 162

Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyzes the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold. Length = 169

>gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148
           GG+ P   AE  +AGA+ +   S++ GA +PA     +  
Sbjct: 157 GGITPENAAEVLAAGADGVAVISAITGADDPAAAARELLA 196

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	100.0
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	100.0
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	100.0
PRK08005	210	epimerase; Validated	100.0
KOG3111	224	consensus D-ribulose-5-phosphate 3-epimerase [Carb	100.0
PRK14057	254	epimerase; Provisional	100.0
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	100.0
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	100.0
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	100.0
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	100.0
PLN02334	229	ribulose-phosphate 3-epimerase	100.0
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	99.97
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	99.96
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	99.96
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	99.96
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	99.96
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	99.96
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	99.95
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	99.95
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	99.93
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	99.92
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	99.92
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	99.89
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	99.86
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	99.85
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	99.84
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	99.77
PLN02591	250	tryptophan synthase	99.66
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	99.65
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	99.61
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	99.58
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	99.56
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	99.54
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	99.54
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	99.49
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	99.47
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	99.47
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	99.46
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	99.45
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	99.45
PRK07695	201	transcriptional regulator TenI; Provisional	99.44
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	99.43
PRK13305	218	sgbH 3-keto-L-gulonate-6-phosphate decarboxylase;	99.4
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	99.34
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	99.34
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	99.32
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.31
PRK04302	223	triosephosphate isomerase; Provisional	99.29
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	99.27
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.26
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	99.26
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	99.25
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	99.24
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	99.24
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	99.22
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	99.21
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	99.2
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	99.2
KOG4175	268	consensus Tryptophan synthase alpha chain [Amino a	99.16
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	99.14
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	99.1
PRK00208	250	thiG thiazole synthase; Reviewed	99.1
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	99.08
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	99.01
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	99.01
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.0
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	98.97
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.94
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	98.93
PRK08999	312	hypothetical protein; Provisional	98.93
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	98.91
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	98.88
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	98.87
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	98.84
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	98.81
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	98.81
TIGR01334	277	modD putative molybdenum utilization protein ModD.	98.81
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.77
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	98.76
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	98.75
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	98.74
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	98.74
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	98.74
PRK07226	267	fructose-bisphosphate aldolase; Provisional	98.73
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.71
cd04725	216	OMP_decarboxylase_like Orotidine 5'-phosphate deca	98.7
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	98.7
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	98.69
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	98.69
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	98.68
PF00215	226	OMPdecase: Orotidine 5'-phosphate decarboxylase /	98.67
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	98.66
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.66
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.65
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	98.64
PRK06806	281	fructose-bisphosphate aldolase; Provisional	98.63
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	98.63
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	98.62
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	98.62
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	98.62
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	98.61
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	98.61
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	98.6
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	98.59
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	98.58
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.57
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.57
PRK01222	210	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	98.56
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	98.56
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	98.56
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	98.55
PRK14024	241	phosphoribosyl isomerase A; Provisional	98.54
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	98.54
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	98.53
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	98.52
PRK06096	284	molybdenum transport protein ModD; Provisional	98.52
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	98.52
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	98.5
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	98.5
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	98.48
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	98.47
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	98.47
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.46
COG0284	240	PyrF Orotidine-5'-phosphate decarboxylase [Nucleot	98.46
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	98.45
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	98.45
PRK07315	293	fructose-bisphosphate aldolase; Provisional	98.43
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	98.41
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	98.41
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	98.41
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	98.4
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	98.39
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	98.38
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	98.38
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	98.38
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	98.38
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	98.37
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	98.35
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	98.34
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	98.31
PF00697	197	PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome	98.31
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.3
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.29
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	98.29
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.28
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	98.27
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	98.26
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	98.24
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.24
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	98.23
PLN02460	338	indole-3-glycerol-phosphate synthase	98.23
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	98.22
COG0157	280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	98.22
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	98.21
COG0149	251	TpiA Triosephosphate isomerase [Carbohydrate trans	98.2
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	98.2
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	98.2
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	98.2
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.19
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	98.19
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	98.19
PRK13958	207	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	98.18
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	98.15
PLN02716	308	nicotinate-nucleotide diphosphorylase (carboxylati	98.14
PRK11572	248	copper homeostasis protein CutC; Provisional	98.14
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.13
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	98.13
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	98.12
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	98.12
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	98.12
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	98.11
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.09
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	98.09
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	98.08
PRK14565	237	triosephosphate isomerase; Provisional	98.06
PRK14567	253	triosephosphate isomerase; Provisional	98.05
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	98.04
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	98.03
cd00311	242	TIM Triosephosphate isomerase (TIM) is a glycolyti	98.03
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.03
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	98.02
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	98.02
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	98.02
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	98.0
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.99
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.98
PRK14024	241	phosphoribosyl isomerase A; Provisional	97.97
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	97.97
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	97.96
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	97.96
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	97.95
PRK08227	264	autoinducer 2 aldolase; Validated	97.95
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	97.95
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.94
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.94
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	97.93
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	97.93
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	97.92
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.91
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	97.9
PLN02826	409	dihydroorotate dehydrogenase	97.9
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.9
TIGR00559	237	pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req	97.9
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	97.9
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	97.9
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	97.89
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	97.88
PLN02363	256	phosphoribosylanthranilate isomerase	97.85
PRK06801	286	hypothetical protein; Provisional	97.84
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	97.84
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	97.84
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	97.84
PRK05265	239	pyridoxine 5'-phosphate synthase; Provisional	97.83
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	97.83
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	97.83
PRK14905	355	triosephosphate isomerase/PTS system glucose/sucro	97.82
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	97.78
PTZ00333	255	triosephosphate isomerase; Provisional	97.77
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	97.76
PRK00042	250	tpiA triosephosphate isomerase; Provisional	97.76
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	97.76
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	97.75
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	97.73
PRK13523	337	NADPH dehydrogenase NamA; Provisional	97.72
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	97.71
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.7
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	97.7
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	97.69
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	97.68
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	97.67
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	97.67
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	97.67
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	97.65
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.62
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	97.6
PRK06852	304	aldolase; Validated	97.59
PLN02429	315	triosephosphate isomerase	97.59
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	97.58
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	97.55
cd02067	119	B12-binding B12 binding domain (B12-BD). This doma	97.55
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	97.52
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	97.52
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	97.52
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	97.5
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	97.5
cd01571	302	NAPRTase_B Nicotinate phosphoribosyltransferase (N	97.5
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	97.48
cd00003	234	PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase	97.47
PRK15492	260	triosephosphate isomerase; Provisional	97.46
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	97.45
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	97.45
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	97.45
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	97.45
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	97.44
PRK07188	352	nicotinate phosphoribosyltransferase; Provisional	97.43
TIGR02127	261	pyrF_sub2 orotidine 5'-phosphate decarboxylase, su	97.42
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	97.4
COG3142	241	CutC Uncharacterized protein involved in copper re	97.39
PRK12331	448	oxaloacetate decarboxylase; Provisional	97.38
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	97.38
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	97.37
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	97.37
PLN02561	253	triosephosphate isomerase	97.37
TIGR00419	205	tim triosephosphate isomerase. Triosephosphate iso	97.36
PLN02411	391	12-oxophytodienoate reductase	97.35
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.35
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	97.34
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	97.3
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	97.26
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	97.26
PRK10605	362	N-ethylmaleimide reductase; Provisional	97.23
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	97.21
COG1411	229	Uncharacterized protein related to proFAR isomeras	97.2
PRK05500	477	bifunctional orotidine 5'-phosphate decarboxylase/	97.2
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	97.19
PF00121	244	TIM: Triosephosphate isomerase; InterPro: IPR00065	97.18
PRK09250	348	fructose-bisphosphate aldolase; Provisional	97.18
PRK05265	239	pyridoxine 5'-phosphate synthase; Provisional	97.16
PRK15452	443	putative protease; Provisional	97.16
PRK08185	283	hypothetical protein; Provisional	97.11
PLN02535	364	glycolate oxidase	97.09
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	97.09
PRK15447	301	putative protease; Provisional	97.09
KOG4201	289	consensus Anthranilate synthase component II [Amin	97.08
PF03740	239	PdxJ: Pyridoxal phosphate biosynthesis protein Pdx	97.08
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.08
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	97.08
PRK08662	343	nicotinate phosphoribosyltransferase; Reviewed	97.03
KOG2335	358	consensus tRNA-dihydrouridine synthase [Translatio	97.02
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	97.01
cd00516	281	PRTase_typeII Phosphoribosyltransferase (PRTase) t	97.0
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	97.0
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	96.99
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.99
TIGR00559	237	pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req	96.97
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	96.96
PLN02274	505	inosine-5'-monophosphate dehydrogenase	96.96
PRK06256	336	biotin synthase; Validated	96.95
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	96.95
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	96.93
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	96.92
PF03740	239	PdxJ: Pyridoxal phosphate biosynthesis protein Pdx	96.91
PRK09282	592	pyruvate carboxylase subunit B; Validated	96.91
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	96.91
PRK14041	467	oxaloacetate decarboxylase; Provisional	96.9
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	96.89
KOG1606	296	consensus Stationary phase-induced protein, SOR/SN	96.88
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.88
cd02071	122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	96.88
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	96.87
PLN02623	581	pyruvate kinase	96.86
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	96.86
PRK12330	499	oxaloacetate decarboxylase; Provisional	96.86
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	96.86
PLN02979	366	glycolate oxidase	96.86
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	96.86
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	96.85
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	96.84
PLN02389	379	biotin synthase	96.8
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	96.77
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	96.73
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	96.73
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	96.73
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	96.72
PRK08508	279	biotin synthase; Provisional	96.71
cd00003	234	PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase	96.71
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	96.71
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	96.69
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	96.65
PRK02261	137	methylaspartate mutase subunit S; Provisional	96.59
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	96.59
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	96.58
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	96.57
PRK12581	468	oxaloacetate decarboxylase; Provisional	96.55
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	96.51
cd02070	201	corrinoid_protein_B12-BD B12 binding domain of cor	96.51
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	96.48
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	96.46
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	96.44
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	96.41
TIGR03239	249	GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co	96.39
PRK14040	593	oxaloacetate decarboxylase; Provisional	96.39
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	96.37
PRK14566	260	triosephosphate isomerase; Provisional	96.37
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	96.36
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	96.35
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	96.27
PRK07094	323	biotin synthase; Provisional	96.26
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	96.2
PRK15108	345	biotin synthase; Provisional	96.19
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	96.18
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	96.18
KOG0538	363	consensus Glycolate oxidase [Energy production and	96.15
PRK00125	278	pyrF orotidine 5'-phosphate decarboxylase; Reviewe	96.11
PRK05826	465	pyruvate kinase; Provisional	96.1
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.03
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	96.02
PRK10558	256	alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro	96.01
TIGR00676	272	fadh2 5,10-methylenetetrahydrofolate reductase, pr	96.01
PLN02746	347	hydroxymethylglutaryl-CoA lyase	95.98
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	95.98
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	95.96
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	95.94
PRK14042	596	pyruvate carboxylase subunit B; Provisional	95.9
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	95.85
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	95.84
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	95.78
TIGR02311	249	HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola	95.77
PRK10128	267	2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	95.74
PRK02227	238	hypothetical protein; Provisional	95.72
COG0502	335	BioB Biotin synthase and related enzymes [Coenzyme	95.69
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	95.68
PF09587	250	PGA_cap: Bacterial capsule synthesis protein PGA_c	95.57
PRK13962	645	bifunctional phosphoglycerate kinase/triosephospha	95.56
PRK12999	1146	pyruvate carboxylase; Reviewed	95.56
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.56
PF04309	175	G3P_antiterm: Glycerol-3-phosphate responsive anti	95.54
PRK10076	213	pyruvate formate lyase II activase; Provisional	95.51
PF00224	348	PK: Pyruvate kinase, barrel domain; InterPro: IPR0	95.44
cd02069	213	methionine_synthase_B12_BD B12 binding domain of m	95.35
cd03316	357	MR_like Mandelate racemase (MR)-like subfamily of	95.33
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	95.32
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	95.32
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	95.27
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	95.26
PTZ00300	454	pyruvate kinase; Provisional	95.24
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	95.18
PLN02334	229	ribulose-phosphate 3-epimerase	95.14
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	95.09
PRK07084	321	fructose-bisphosphate aldolase; Provisional	95.08
PRK00915	513	2-isopropylmalate synthase; Validated	95.05
TIGR01417	565	PTS_I_fam phosphoenolpyruvate-protein phosphotrans	95.03
PRK06464	795	phosphoenolpyruvate synthase; Validated	95.02
PF06073	110	DUF934: Bacterial protein of unknown function (DUF	94.91
TIGR00677	281	fadh2_euk methylenetetrahydrofolate reductase, euk	94.89
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	94.82
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	94.78
COG0854	243	PdxJ Pyridoxal phosphate biosynthesis protein [Coe	94.75
PRK09389	488	(R)-citramalate synthase; Provisional	94.73
KOG3055	263	consensus Phosphoribosylformimino-5-aminoimidazole	94.69
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	94.69
TIGR01064	473	pyruv_kin pyruvate kinase. This enzyme is a homote	94.68
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	94.68
COG0854	243	PdxJ Pyridoxal phosphate biosynthesis protein [Coe	94.54
PRK12344	524	putative alpha-isopropylmalate/homocitrate synthas	94.52
COG0325	228	Predicted enzyme with a TIM-barrel fold [General f	94.48
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	94.48
PRK09250	348	fructose-bisphosphate aldolase; Provisional	94.44
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	94.42
PF01120	346	Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR00	94.34
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	94.3
cd00288	480	Pyruvate_Kinase Pyruvate kinase (PK): Large allost	94.25
PLN02540	565	methylenetetrahydrofolate reductase	94.24
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	94.19
PRK00955	620	hypothetical protein; Provisional	94.17
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	94.15
KOG4202	227	consensus Phosphoribosylanthranilate isomerase [Am	94.1
PRK09426	714	methylmalonyl-CoA mutase; Reviewed	94.02
TIGR01418	782	PEP_synth phosphoenolpyruvate synthase. Also calle	93.98
PRK06852	304	aldolase; Validated	93.98
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	93.92
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	93.85
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	93.77
PF13941	457	MutL: MutL protein	93.74
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	93.72
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	93.71
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	93.65
COG0826	347	Collagenase and related proteases [Posttranslation	93.64
cd08207	406	RLP_NonPhot Ribulose bisphosphate carboxylase like	93.58
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	93.53
PF14871	132	GHL6: Hypothetical glycosyl hydrolase 6	93.47
cd02068	127	radical_SAM_B12_BD B12 binding domain_like associa	93.44
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	93.39
PRK09240	371	thiH thiamine biosynthesis protein ThiH; Reviewed	93.35
smart00812	384	Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydro	93.34
cd07381	239	MPP_CapA CapA and related proteins, metallophospha	93.33
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	93.19
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	93.08
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	93.05
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	93.02
TIGR00977	526	LeuA_rel 2-isopropylmalate synthase/homocitrate sy	92.96
PRK06267	350	hypothetical protein; Provisional	92.91
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	92.88
cd07947	279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	92.87
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	92.63
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	92.45
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	92.38
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	92.35
COG0119	409	LeuA Isopropylmalate/homocitrate/citramalate synth	92.33
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	92.17
COG0320	306	LipA Lipoate synthase [Coenzyme metabolism]	92.13
TIGR02370	197	pyl_corrinoid methyltransferase cognate corrinoid	92.07
PLN03228	503	methylthioalkylmalate synthase; Provisional	92.0
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	91.98
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	91.85
cd02072	128	Glm_B12_BD B12 binding domain of glutamate mutase	91.78
COG1891	235	Uncharacterized protein conserved in archaea [Func	91.55
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	91.55
PF05913	357	DUF871: Bacterial protein of unknown function (DUF	91.52
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	91.46
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	91.45
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	91.44
TIGR00486	249	YbgI_SA1388 dinuclear metal center protein, YbgI/S	91.42
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	91.36
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	91.34
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	91.27
cd08210	364	RLP_RrRLP Ribulose bisphosphate carboxylase like p	91.23
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	91.11
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	91.04
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	91.0
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	90.92
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	90.89
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	90.8
PRK09432	296	metF 5,10-methylenetetrahydrofolate reductase; Pro	90.76
PF03328	221	HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family	90.6
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	90.53
TIGR01362	258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	90.31
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	90.24
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	90.18
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	90.02
PRK13958	207	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	90.0
PRK10799	247	metal-binding protein; Provisional	89.98
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	89.93
TIGR00973	494	leuA_bact 2-isopropylmalate synthase, bacterial ty	89.83
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	89.8
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	89.77
KOG3974	306	consensus Predicted sugar kinase [Carbohydrate tra	89.73
TIGR02026	497	BchE magnesium-protoporphyrin IX monomethyl ester	89.7
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	89.63
smart00854	239	PGA_cap Bacterial capsule synthesis protein PGA_ca	89.61
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	89.35
PLN02321	632	2-isopropylmalate synthase	89.31
PRK13533	487	7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr	89.16
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	89.07
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	89.03
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	88.85
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	88.82
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	88.79
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	88.71
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	88.7

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.8e-47  Score=290.69  Aligned_cols=147  Identities=44%  Similarity=0.746  Sum_probs=141.5

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ||++|++|++.|+++|||+||||.|+..+. .+++++||++|+++|+++||+||++.+++++   +.+|+|++|||+|||
T Consensus        69 MV~~p~~~i~~fa~agad~It~H~E~~~~~-~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l---~~vD~VllMsVnPGf  144 (220)
T COG0036          69 MVENPDRYIEAFAKAGADIITFHAEATEHI-HRTIQLIKELGVKAGLVLNPATPLEALEPVL---DDVDLVLLMSVNPGF  144 (220)
T ss_pred             ecCCHHHHHHHHHHhCCCEEEEEeccCcCH-HHHHHHHHHcCCeEEEEECCCCCHHHHHHHH---hhCCEEEEEeECCCC
Confidence            999999999999999999999999988888 9999999999999999999999999999999   899999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhCC---CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYP---SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~---~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      +||+|.+++++||+++|++..   ++.|+||||||.+|++++.++|||.+|+||++|+.+|..++++.++....
T Consensus       145 gGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~~  218 (220)
T COG0036         145 GGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGELL  218 (220)
T ss_pred             cccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHHHhh
Confidence            999999999999999999865   67899999999999999999999999999999999999999999987654

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=6.2e-46  Score=288.07  Aligned_cols=149  Identities=40%  Similarity=0.673  Sum_probs=142.4

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ||+||++|++.++++|||+|+||+|++.++ .+++++||++|+++|+++||.||++.+++++   +.+|+|++|||+|||
T Consensus        70 Mv~~P~~~i~~~~~~gad~I~~H~Ea~~~~-~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l---~~vD~VlvMtV~PGf  145 (223)
T PRK08745         70 MVEPVDRIVPDFADAGATTISFHPEASRHV-HRTIQLIKSHGCQAGLVLNPATPVDILDWVL---PELDLVLVMSVNPGF  145 (223)
T ss_pred             ccCCHHHHHHHHHHhCCCEEEEcccCcccH-HHHHHHHHHCCCceeEEeCCCCCHHHHHHHH---hhcCEEEEEEECCCC
Confidence            999999999999999999999999998888 9999999999999999999999999999999   899999999999999


Q ss_pred             CCcccchhHHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      +||+|.++.++||+++|++    .+++.|+||||||.+|++++.++|||++|+||+||+++|+.++++.+++.+..+
T Consensus       146 ~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~~~~  222 (223)
T PRK08745        146 GGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVAAV  222 (223)
T ss_pred             CCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999986    346889999999999999999999999999999999899999999999887654

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=100.00  E-value=4.8e-45  Score=283.06  Aligned_cols=146  Identities=21%  Similarity=0.327  Sum_probs=139.9

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC--ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM--RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~--~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      ||.||++|++.|+++|||+++||+|++.++ .++++.||++|+  ++|+++||+||++.+++++   +.+|+|++|||+|
T Consensus        76 Mv~~P~~~i~~~~~aGad~It~H~Ea~~~~-~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l---~~vD~VLiMtV~P  151 (228)
T PRK08091         76 MVRDQFEVAKACVAAGADIVTLQVEQTHDL-ALTIEWLAKQKTTVLIGLCLCPETPISLLEPYL---DQIDLIQILTLDP  151 (228)
T ss_pred             ccCCHHHHHHHHHHhCCCEEEEcccCcccH-HHHHHHHHHCCCCceEEEEECCCCCHHHHHHHH---hhcCEEEEEEECC
Confidence            999999999999999999999999998888 999999999999  9999999999999999999   8999999999999


Q ss_pred             CCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554           79 GFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      ||+||+|.+.+++||+++|++    .+++.|+||||||.+|++++.++|||++|+||++|+.+|+.+.++.|++.+
T Consensus       152 GfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~~~~  227 (228)
T PRK08091        152 RTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKSSL  227 (228)
T ss_pred             CCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHHHhh
Confidence            999999999999999999986    346789999999999999999999999999999999889999999999875

>PRK08005 epimerase; Validated

Probab=100.00  E-value=4.5e-45  Score=280.61  Aligned_cols=143  Identities=27%  Similarity=0.433  Sum_probs=137.9

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ||+||++|++.++++|||++|||+|++.++ .+++++||++|+++|+++||.||++.+++++   +.+|+|++|+|+|||
T Consensus        66 Mv~~P~~~i~~~~~~gad~It~H~Ea~~~~-~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l---~~vD~VlvMsV~PGf  141 (210)
T PRK08005         66 MVSSPQRWLPWLAAIRPGWIFIHAESVQNP-SEILADIRAIGAKAGLALNPATPLLPYRYLA---LQLDALMIMTSEPDG  141 (210)
T ss_pred             ccCCHHHHHHHHHHhCCCEEEEcccCccCH-HHHHHHHHHcCCcEEEEECCCCCHHHHHHHH---HhcCEEEEEEecCCC
Confidence            999999999999999999999999998888 9999999999999999999999999999999   899999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      +||+|.+.+++||+++|++.+...|+||||||.+|++++.++|||++|+||+||+.+|+.++++.|.
T Consensus       142 ~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~~  208 (210)
T PRK08005        142 RGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFT  208 (210)
T ss_pred             ccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHh
Confidence            9999999999999999998877789999999999999999999999999999999889988887764

>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.9e-44  Score=268.71  Aligned_cols=151  Identities=64%  Similarity=1.005  Sum_probs=147.1

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ||+||++|+++++++||+.+|||+|+.+.+ .+++++||+.|+++|++|+|.||++.+++++   +.+|.+|+|||+|||
T Consensus        72 MV~~Peq~V~~~a~agas~~tfH~E~~q~~-~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~---~~~D~vLvMtVePGF  147 (224)
T KOG3111|consen   72 MVENPEQWVDQMAKAGASLFTFHYEATQKP-AELVEKIREKGMKVGLALKPGTPVEDLEPLA---EHVDMVLVMTVEPGF  147 (224)
T ss_pred             eecCHHHHHHHHHhcCcceEEEEEeeccCH-HHHHHHHHHcCCeeeEEeCCCCcHHHHHHhh---ccccEEEEEEecCCC
Confidence            899999999999999999999999999998 9999999999999999999999999999999   889999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~  155 (157)
                      +||+|.++.+.|++.+|+.+|+..|+||||++++|+..+.+||||.+|+||++|++.||.+.++.||+....+..
T Consensus       148 GGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~~  222 (224)
T KOG3111|consen  148 GGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEKAAC  222 (224)
T ss_pred             chhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhhhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887653

>PRK14057 epimerase; Provisional

Probab=100.00  E-value=5.5e-44  Score=280.22  Aligned_cols=149  Identities=21%  Similarity=0.349  Sum_probs=141.4

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC---------ceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM---------RPGVALKPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~---------~~gl~l~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      ||.||++|++.|+++|||+|+||+|+..++ .+++++||++|+         ++|+++||+||++.+++++   +.+|+|
T Consensus        83 MV~~P~~~i~~~~~aGad~It~H~Ea~~~~-~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l---~~vD~V  158 (254)
T PRK14057         83 MVADQWTAAQACVKAGAHCITLQAEGDIHL-HHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPIL---SDVEVI  158 (254)
T ss_pred             eeCCHHHHHHHHHHhCCCEEEEeeccccCH-HHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHH---HhCCEE
Confidence            999999999999999999999999998888 999999999997         5999999999999999999   899999


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      ++|+|+|||+||+|.+++++||+++|++.    +++.|+||||||.+|++++.++|||++|+||++|+.+|++++++.|+
T Consensus       159 LvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~  238 (254)
T PRK14057        159 QLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWR  238 (254)
T ss_pred             EEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHH
Confidence            99999999999999999999999999863    46889999999999999999999999999999999889999999999


Q ss_pred             HHHHHH
Q 031554          148 KSVEDA  153 (157)
Q Consensus       148 ~~~~~~  153 (157)
                      +.+..+
T Consensus       239 ~~~~~~  244 (254)
T PRK14057        239 AMFKVA  244 (254)
T ss_pred             HHHhhc
Confidence            887654

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=6.4e-44  Score=276.66  Aligned_cols=148  Identities=40%  Similarity=0.681  Sum_probs=141.7

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ||+||++|++.++++|||++|||.|+++++ .++++++|++|+++|+++||+||++.+++++   +.+|+|++||++|||
T Consensus        66 Mv~~p~~~i~~~~~~gad~i~~H~Ea~~~~-~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l---~~~D~vlvMtV~PGf  141 (220)
T PRK08883         66 MVKPVDRIIPDFAKAGASMITFHVEASEHV-DRTLQLIKEHGCQAGVVLNPATPLHHLEYIM---DKVDLILLMSVNPGF  141 (220)
T ss_pred             ccCCHHHHHHHHHHhCCCEEEEcccCcccH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH---HhCCeEEEEEecCCC
Confidence            999999999999999999999999999888 9999999999999999999999999999999   899999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhCC----CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +||+|.+..++||++++++..    +++|+||||||.+|++++.++|||++|+||+||+++|+.++++++++.++.
T Consensus       142 gGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~~  217 (220)
T PRK08883        142 GGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELAK  217 (220)
T ss_pred             CCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999998743    588999999999999999999999999999999999999999999987654

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=1.1e-43  Score=276.07  Aligned_cols=149  Identities=36%  Similarity=0.611  Sum_probs=139.2

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      ||+||++|++.++++|||+|+||+|+.. ++ .++++.||++|+++|+++||+||++.+++++   +.+|+|++|+|+||
T Consensus        67 Mv~~P~~~i~~~~~aGad~it~H~Ea~~~~~-~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l---~~vD~VLvMsV~PG  142 (229)
T PRK09722         67 MVTDPQDYIDQLADAGADFITLHPETINGQA-FRLIDEIRRAGMKVGLVLNPETPVESIKYYI---HLLDKITVMTVDPG  142 (229)
T ss_pred             EecCHHHHHHHHHHcCCCEEEECccCCcchH-HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH---HhcCEEEEEEEcCC
Confidence            8999999999999999999999999864 67 8999999999999999999999999999999   89999999999999


Q ss_pred             CCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc-cccC-CCCHHHHHHHHHHHHHHH
Q 031554           80 FGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGS-SVFG-APEPAHVISLMRKSVEDA  153 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS-ai~~-~~d~~~~~~~l~~~~~~~  153 (157)
                      |+||+|.+++++||+++|++.    +++.|+||||||.+|++++.++|||++|+|| +||+ .+|+.+.++.+++.++++
T Consensus       143 f~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~~~  222 (229)
T PRK09722        143 FAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIEAA  222 (229)
T ss_pred             CcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999863    4578999999999999999999999999996 5998 478999999999877654

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=100.00  E-value=2.2e-42  Score=264.63  Aligned_cols=133  Identities=49%  Similarity=0.852  Sum_probs=119.7

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ||+||++|++.+.++|+|+|+||.|+..++ .++++++|++|+++|+++||.||++.+++++   +.+|+|++|+|+|||
T Consensus        65 Mv~~P~~~i~~~~~~g~~~i~~H~E~~~~~-~~~i~~ik~~g~k~GialnP~T~~~~~~~~l---~~vD~VlvMsV~PG~  140 (201)
T PF00834_consen   65 MVENPERYIEEFAEAGADYITFHAEATEDP-KETIKYIKEAGIKAGIALNPETPVEELEPYL---DQVDMVLVMSVEPGF  140 (201)
T ss_dssp             ESSSGGGHHHHHHHHT-SEEEEEGGGTTTH-HHHHHHHHHTTSEEEEEE-TTS-GGGGTTTG---CCSSEEEEESS-TTT
T ss_pred             eeccHHHHHHHHHhcCCCEEEEcccchhCH-HHHHHHHHHhCCCEEEEEECCCCchHHHHHh---hhcCEEEEEEecCCC
Confidence            899999999999999999999999999988 9999999999999999999999999999999   899999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554           81 GGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      +||+|.+++++||++++++.    +++.|+||||||.+|++++.++|||++|+||++|+++
T Consensus       141 ~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~~~  201 (201)
T PF00834_consen  141 GGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSAIFKAD  201 (201)
T ss_dssp             SSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHHHHTS-
T ss_pred             CcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCC
Confidence            99999999999999999863    5699999999999999999999999999999999853

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=7.1e-38  Score=244.18  Aligned_cols=152  Identities=55%  Similarity=0.902  Sum_probs=143.8

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      |+.+|..|++.++++|+|++|||.|+..+.+.++++.+|++|+++|++++|.||++.++++++. +.+|+|++|+++||+
T Consensus        73 m~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~-~~vD~Vl~m~v~pG~  151 (228)
T PTZ00170         73 MVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDT-DLVDMVLVMTVEPGF  151 (228)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHcc-chhhhHHhhhcccCC
Confidence            8899999999999999999999999988734899999999999999999999999999999854 578999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      +||.|.+..+++++++++..+++.|+||||||++|++.+.++|||++|+||+||+++||.++++.+++.++..
T Consensus       152 ~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~~~  224 (228)
T PTZ00170        152 GGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQKH  224 (228)
T ss_pred             CCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998878999999999999999999999999999999999999999999999988763

>PLN02334 ribulose-phosphate 3-epimerase

Probab=100.00  E-value=1.5e-34  Score=225.45  Aligned_cols=149  Identities=67%  Similarity=1.028  Sum_probs=140.8

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCC--CCeEEEEee
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANP--VEMVLVMTV   76 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~--~d~vl~m~v   76 (157)
                      |+.||.+|++.+.++|||+|+||.|  +.+.+ .+.++.++++|+++|++++|+|+.+.+++++   ..  +|+|++|++
T Consensus        73 mv~~p~d~~~~~~~~gad~v~vH~~q~~~d~~-~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~---~~~~~Dyi~~~~v  148 (229)
T PLN02334         73 MVTNPEDYVPDFAKAGASIFTFHIEQASTIHL-HRLIQQIKSAGMKAGVVLNPGTPVEAVEPVV---EKGLVDMVLVMSV  148 (229)
T ss_pred             ccCCHHHHHHHHHHcCCCEEEEeeccccchhH-HHHHHHHHHCCCeEEEEECCCCCHHHHHHHH---hccCCCEEEEEEE
Confidence            7899999999999999999999999  45666 8999999999999999999999999999998   67  999999999


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      +||+++|.|.+..+++++++++..++++|+||||||++|++++.++|||++|+||+||+++||.++++.|++.++++
T Consensus       149 ~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~~  225 (229)
T PLN02334        149 EPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEKA  225 (229)
T ss_pred             ecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999998778899999999999999999999999999999999999999999999887764

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=99.97  E-value=4e-29  Score=192.78  Aligned_cols=146  Identities=47%  Similarity=0.787  Sum_probs=134.7

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      |+.+|.++++.+.++|+|+++||.+..+.. ...++.++++|.++|++++|+|+.+.++++.   ..+|++++|+++||+
T Consensus        69 ~v~d~~~~i~~~~~~g~d~v~vh~~~~~~~-~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~---~~~d~i~~~~~~~g~  144 (220)
T PRK05581         69 MVENPDRYVPDFAKAGADIITFHVEASEHI-HRLLQLIKSAGIKAGLVLNPATPLEPLEDVL---DLLDLVLLMSVNPGF  144 (220)
T ss_pred             eeCCHHHHHHHHHHcCCCEEEEeeccchhH-HHHHHHHHHcCCEEEEEECCCCCHHHHHHHH---hhCCEEEEEEECCCC
Confidence            788999999999999999999999987766 8999999999999999999999999999988   679999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhCC----CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      +||.|.+..+++++++++..+    ++.|++|||||++|++++.++|+|++|+||+||+++||.+++++|++.+
T Consensus       145 tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~~  218 (220)
T PRK05581        145 GGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAEL  218 (220)
T ss_pred             CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHh
Confidence            999999999999999987643    2668999999999999999999999999999999999999999998764

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.96  E-value=1.1e-28  Score=194.14  Aligned_cols=142  Identities=22%  Similarity=0.336  Sum_probs=126.5

Q ss_pred             CcChHHHHHHHHhCCCCEEEEc---ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            2 VTNPLDYVEPLGKAGASGFTFH---VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         2 v~~p~~~i~~~~~~gad~v~vh---~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      +.+|.+|++.+.++|+|.+++|   .|+.++. .++++.++++|+++|++++|.||.+++++++   ...|.+++|+++|
T Consensus        87 ~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~-~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~---~~~~~~l~msv~~  162 (244)
T PRK13125         87 VDSLDNFLNMARDVGADGVLFPDLLIDYPDDL-EKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS---KLSPLFIYYGLRP  162 (244)
T ss_pred             hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHH-HHHHHHHHHcCCCEEEEECCCCCHHHHHHHH---HhCCCEEEEEeCC
Confidence            6799999999999999999999   6766777 8999999999999999999999999999999   7899999999999


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccC---CCCHHHHHHHHHH
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFG---APEPAHVISLMRK  148 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~---~~d~~~~~~~l~~  148 (157)
                      |++ ++|.+...++++++|+..++.+|++|||| |+++++.+.++|||++|+||++|+   .++..+..+.+++
T Consensus       163 ~~g-~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~  235 (244)
T PRK13125        163 ATG-VPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEELEKNGVESALNLLKK  235 (244)
T ss_pred             CCC-CCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHH
Confidence            995 58999999999999998777789999999 899999999999999999999996   3444444444443

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=99.96  E-value=4.4e-28  Score=185.51  Aligned_cols=143  Identities=43%  Similarity=0.707  Sum_probs=132.1

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      |+.++.+|++.+.++|+|++++|.+..++. ...++.+|++|.++++.++++|+.+.++++.   ..+|++++|+++||+
T Consensus        64 m~~~~~~~~~~~~~~gadgv~vh~~~~~~~-~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~---~~~d~i~~~~~~~g~  139 (210)
T TIGR01163        64 MVENPDRYIEDFAEAGADIITVHPEASEHI-HRLLQLIKDLGAKAGIVLNPATPLEFLEYVL---PDVDLVLLMSVNPGF  139 (210)
T ss_pred             eeCCHHHHHHHHHHcCCCEEEEccCCchhH-HHHHHHHHHcCCcEEEEECCCCCHHHHHHHH---hhCCEEEEEEEcCCC
Confidence            788999999999999999999999987777 8999999999999999999999999999998   789999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      +|+.|.+..++++++++++.    ++++++++||||++|++++.++|||++|+||+||+++||.+++++++
T Consensus       140 tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~~  210 (210)
T TIGR01163       140 GGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGADDYKEVIRSLR  210 (210)
T ss_pred             CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHhC
Confidence            99999999999998888753    34789999999999999999999999999999999999999988763

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=99.96  E-value=3.6e-28  Score=201.57  Aligned_cols=145  Identities=12%  Similarity=0.180  Sum_probs=132.4

Q ss_pred             CCcChHHH-HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEe-ee
Q 031554            1 MVTNPLDY-VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMT-VE   77 (157)
Q Consensus         1 Mv~~p~~~-i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~-v~   77 (157)
                      |+.||.++ ++.++++|||++|||.|+..+.+.+.++.+|++|+++|+ ++||+||.+.++++.   ..+|+|++|+ ++
T Consensus       234 K~~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~---~~vD~Vllht~vd  310 (391)
T PRK13307        234 KTLDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLK---VKPDVVELHRGID  310 (391)
T ss_pred             cccChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhh---CCCCEEEEccccC
Confidence            67899999 889999999999999999886669999999999999999 899999999999997   8999999997 88


Q ss_pred             CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554           78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus        78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      ||  +|   +..+++|+++|+..++++|+|||||+.++++++.++|||++|+||+||+++||.++++++++.++..
T Consensus       311 p~--~~---~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i~~~  381 (391)
T PRK13307        311 EE--GT---EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKLKPD  381 (391)
T ss_pred             CC--cc---cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhhccC
Confidence            88  33   3467899999988778999999999999999999999999999999999999999999999987643

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=99.96  E-value=3.7e-28  Score=188.07  Aligned_cols=152  Identities=14%  Similarity=0.162  Sum_probs=137.6

Q ss_pred             CCcChHHHHH-HHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            1 MVTNPLDYVE-PLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         1 Mv~~p~~~i~-~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      |+.||.+++. .++++|+|++|||.++.++.+.+.++.++++|+++|++++|.++.+.++++++. +..|+++.|+++||
T Consensus        64 K~~Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~-~~~~~vl~~a~~~~  142 (216)
T PRK13306         64 KIADAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDA-GISQVIYHRSRDAQ  142 (216)
T ss_pred             eecCCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcC-Chhhhhhhhhhhhh
Confidence            4567777776 889999999999999988877899999999999999999999999999877744 47899999999999


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~  155 (157)
                      ++||.|.+..+++|+++++.  ++.|.|||||++++++.+.++|||.+|+||+||+++||.++++.+++.++..|+
T Consensus       143 ~~G~v~s~~~~~~ir~~~~~--~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~~i~~~~~  216 (216)
T PRK13306        143 LAGVAWGEKDLNKVKKLSDM--GFKVSVTGGLVVEDLKLFKGIPVKTFIAGRAIRGAADPAAAARAFKDEIAKYWG  216 (216)
T ss_pred             hcCCCCCHHHHHHHHHHhcC--CCeEEEcCCCCHhhHHHHhcCCCCEEEECCcccCCCCHHHHHHHHHHHHHhccC
Confidence            99999999999999999873  577999999999999999999999999999999999999999999999987663

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=99.96  E-value=1.6e-27  Score=182.22  Aligned_cols=143  Identities=50%  Similarity=0.825  Sum_probs=131.5

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      |+.||.++++.+.++|+|++++|.+..+.. .+.++.++++|.++|++++++|+.+.++++.   ..+|++++++++||.
T Consensus        65 ~~~d~~~~~~~~~~~g~dgv~vh~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~d~i~~~~~~~g~  140 (211)
T cd00429          65 MVENPERYIEAFAKAGADIITFHAEATDHL-HRTIQLIKELGMKAGVALNPGTPVEVLEPYL---DEVDLVLVMSVNPGF  140 (211)
T ss_pred             eeCCHHHHHHHHHHcCCCEEEECccchhhH-HHHHHHHHHCCCeEEEEecCCCCHHHHHHHH---hhCCEEEEEEECCCC
Confidence            678999999999999999999999987766 8999999999999999999989988888887   679999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhCC----CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      +++.+.+..++++++++++.+    +++++++|||+++|++++.++|||++|+||+||+.+||.+++++++
T Consensus       141 tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~~~~~~~~~~~~  211 (211)
T cd00429         141 GGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKELR  211 (211)
T ss_pred             CCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHhC
Confidence            999998888999999988753    5899999999999999999999999999999999999999988764

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=99.95  E-value=6.5e-27  Score=179.14  Aligned_cols=143  Identities=20%  Similarity=0.266  Sum_probs=128.8

Q ss_pred             CcChHHH-HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            2 VTNPLDY-VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         2 v~~p~~~-i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      +.+|.++ ++.+.++|||++++|.++....+.+++++++++|+++++.+ +|.|+.+.++++.+  .++|+|   +++||
T Consensus        61 ~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~--~g~d~v---~~~pg  135 (206)
T TIGR03128        61 TMDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE--LGADYI---GVHTG  135 (206)
T ss_pred             eccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH--cCCCEE---EEcCC
Confidence            4588888 99999999999999999875434899999999999999995 99999988888773  278987   55899


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      |++|.+.+..+++++++++..+.+.|+++|||+.+|++++.++|||++++||+||+++|+.+.++.+++.
T Consensus       136 ~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~  205 (206)
T TIGR03128       136 LDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL  205 (206)
T ss_pred             cCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence            9999999888999999999888889999999999999999999999999999999999999999999865

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=99.95  E-value=4.8e-28  Score=186.81  Aligned_cols=146  Identities=21%  Similarity=0.292  Sum_probs=127.1

Q ss_pred             CcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            2 VTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         2 v~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      ..+|..+++.+.++|||++|||.|+..+.+.++++.++++|+++|++++|.+ .+.++.+.   +.+|.++.|+++||++
T Consensus        66 ~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~-~~~~~~~~---~~~~~v~~m~~e~G~~  141 (215)
T PRK13813         66 PNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSH-PGALEFIQ---PHADKLAKLAQEAGAF  141 (215)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCC-CCCCCCHH---HHHHHHHHHHHHhCCC
Confidence            4567777799999999999999998766558999999999999999999876 44455555   5678899999999999


Q ss_pred             CcccchhHHHHHHHHHhhCCC-CcEEEEcCCCHhh--HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           82 GQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLGPST--IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI~~~~--i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      ||.|.+..+++|+++++..+. +.+ +||||+.++  ++.+.++|||++|+||+||+++||.+.++.+++.+++
T Consensus       142 g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~~~  214 (215)
T PRK13813        142 GVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEIRG  214 (215)
T ss_pred             eEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHHhc
Confidence            999999889999999887643 567 999999975  9999999999999999999999999999999988764

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=99.93  E-value=7.3e-25  Score=173.58  Aligned_cols=145  Identities=18%  Similarity=0.334  Sum_probs=128.2

Q ss_pred             CCcCh------HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCC-eEEE
Q 031554            1 MVTNP------LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVE-MVLV   73 (157)
Q Consensus         1 Mv~~p------~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d-~vl~   73 (157)
                      |..||      ++|++.+.++|+|.+++|.+..++. .++++.+|++|+.+++.++|.|+.++++++.   ...+ +|.+
T Consensus        94 ~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~-~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~---~~~~gfiy~  169 (256)
T TIGR00262        94 TYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEES-GDLVEAAKKHGVKPIFLVAPNADDERLKQIA---EKSQGFVYL  169 (256)
T ss_pred             EeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHH-HHHHHHHHHCCCcEEEEECCCCCHHHHHHHH---HhCCCCEEE
Confidence            56788      9999999999999999999988877 9999999999999999999999999999999   6677 9999


Q ss_pred             EeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHH
Q 031554           74 MTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISL  145 (157)
Q Consensus        74 m~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~  145 (157)
                      |++. |++||.  |.+...++++++|+.. +.+|+|+|||+ +++++++.++|||++|+||++|+.     .++.+.++.
T Consensus       170 vs~~-G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~~~~~~~~~~~~~  247 (256)
T TIGR00262       170 VSRA-GVTGARNRAASALNELVKRLKAYS-AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEENLNTPEKMLQA  247 (256)
T ss_pred             EECC-CCCCCcccCChhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhccCCHHHHHHH
Confidence            9997 999996  8888999999999974 56899999998 999999999999999999999962     256666666


Q ss_pred             HHHHHH
Q 031554          146 MRKSVE  151 (157)
Q Consensus       146 l~~~~~  151 (157)
                      +++.++
T Consensus       248 i~~~~~  253 (256)
T TIGR00262       248 LEEFVQ  253 (256)
T ss_pred             HHHHHH
Confidence            665554

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=99.92  E-value=2.9e-24  Score=168.86  Aligned_cols=125  Identities=18%  Similarity=0.291  Sum_probs=115.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCC-CCCeEEEEeeeCCCCCcc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGAN-PVEMVLVMTVEPGFGGQK   84 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~-~~d~vl~m~v~pG~~gq~   84 (157)
                      ++|++.+.++|+|.+++|-...++. .++++.+|++|+++++.++|.|+.+++++++   . ..|+|++|++.|++++|.
T Consensus        94 ~~fi~~~~~aG~~giiipDl~~ee~-~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~---~~~~~~vy~~s~~g~tG~~~  169 (242)
T cd04724          94 ERFLRDAKEAGVDGLIIPDLPPEEA-EEFREAAKEYGLDLIFLVAPTTPDERIKKIA---ELASGFIYYVSRTGVTGART  169 (242)
T ss_pred             HHHHHHHHHCCCcEEEECCCCHHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH---hhCCCCEEEEeCCCCCCCcc
Confidence            9999999999999999965544555 8999999999999999999999999999999   5 789999999999999998


Q ss_pred             -cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           85 -FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        85 -~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                       |.+...++++++|+. .+++|.|||||+ .++++++.++ ||++|+||++|+.
T Consensus       170 ~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~  221 (242)
T cd04724         170 ELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKI  221 (242)
T ss_pred             CCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHH
Confidence             788889999999997 589999999999 6799999999 9999999999863

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=99.92  E-value=2.9e-24  Score=163.68  Aligned_cols=138  Identities=22%  Similarity=0.252  Sum_probs=116.2

Q ss_pred             CCcChHHH-HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE-ecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            1 MVTNPLDY-VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         1 Mv~~p~~~-i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      |+.+|.++ ++.+.++|||++++|.++..+...+++++++++|++++++ ++|.|+.+..+.+.   ..+|++.+   .|
T Consensus        61 ~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~---~~  134 (202)
T cd04726          61 KTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK---LGVDIVIL---HR  134 (202)
T ss_pred             EeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH---CCCCEEEE---cC
Confidence            55677655 7999999999999999987654488999999999999996 89999999887444   58999877   45


Q ss_pred             CCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 031554           79 GFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  145 (157)
Q Consensus        79 G~~gq~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~  145 (157)
                      ++.++.+ .+...++++++++. ++++|.++||||++|+.++.++|||++|+||+||+++||.++++.
T Consensus       135 ~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~~  201 (202)
T cd04726         135 GIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAARE  201 (202)
T ss_pred             cccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHhc
Confidence            5555554 35567788888876 589999999999999999999999999999999999999888764

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=99.89  E-value=1.3e-21  Score=155.37  Aligned_cols=142  Identities=13%  Similarity=0.217  Sum_probs=119.5

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCC-eEEEEeeeCCCCCc
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVE-MVLVMTVEPGFGGQ   83 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d-~vl~m~v~pG~~gq   83 (157)
                      .++|++.+.++|+|.+.+|.+..++. .++++.++++|+.++..++|+||.++++++.   ...+ +|.+|+ .||++||
T Consensus       108 ~e~F~~~~~~aGvdgviipDLP~ee~-~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~---~~a~gFIY~vS-~~GvTG~  182 (263)
T CHL00200        108 INKFIKKISQAGVKGLIIPDLPYEES-DYLISVCNLYNIELILLIAPTSSKSRIQKIA---RAAPGCIYLVS-TTGVTGL  182 (263)
T ss_pred             HHHHHHHHHHcCCeEEEecCCCHHHH-HHHHHHHHHcCCCEEEEECCCCCHHHHHHHH---HhCCCcEEEEc-CCCCCCC
Confidence            47899999999999999999998888 9999999999999999999999999999999   6677 777777 7899998


Q ss_pred             c--cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccc---cCCCCHHHHHHHHHHHHHH
Q 031554           84 K--FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV---FGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        84 ~--~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai---~~~~d~~~~~~~l~~~~~~  152 (157)
                      .  +.+...+.++++|+. .+.+|+|+|||+ +++++++.++|||++|+||++   +...++.+.++.+++.++.
T Consensus       183 ~~~~~~~~~~~i~~ir~~-t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~~~~~~~~~~~~~~~~~~  256 (263)
T CHL00200        183 KTELDKKLKKLIETIKKM-TNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLGSSPEKGLDQLSEFCKV  256 (263)
T ss_pred             CccccHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHHhcChhhHHHHHHHHHHH
Confidence            4  344556668888875 589999999999 899999999999999999998   5444455545555554443

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=99.86  E-value=9.6e-21  Score=159.74  Aligned_cols=144  Identities=21%  Similarity=0.293  Sum_probs=126.0

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      |..+++.+.++|||+|++|.+..+.++.++++.++++|+.+++ .++++|+.+.++++.+  .++|+|.+   .||+++|
T Consensus        70 g~~~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~---~pg~~~~  144 (430)
T PRK07028         70 GAIEVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINV---HVGIDQQ  144 (430)
T ss_pred             hHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEE---Eeccchh
Confidence            7789999999999999999886554447899999999999998 5788899888777774  36999944   5999988


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      .+.+..++.++++++.. +++|.++|||+.+|+.++.++|||++++||+||+++||.+.++.+++.+++.|
T Consensus       145 ~~~~~~~~~l~~l~~~~-~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~~~  214 (430)
T PRK07028        145 MLGKDPLELLKEVSEEV-SIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDSGK  214 (430)
T ss_pred             hcCCChHHHHHHHHhhC-CCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhccC
Confidence            88777788899988764 58999999999999999999999999999999999999999999999988765

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=99.85  E-value=6.8e-20  Score=140.01  Aligned_cols=141  Identities=19%  Similarity=0.262  Sum_probs=118.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC----
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG----   81 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~----   81 (157)
                      ...++++++|||++|+..-+++.++...++.++++|+.+.+.+ +..||.+..+++.++  ++|++++.   -|.+    
T Consensus        71 ~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~--gvd~~~~H---~g~D~q~~  145 (217)
T COG0269          71 IEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKEL--GVDQVILH---RGRDAQAA  145 (217)
T ss_pred             HHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHh--CCCEEEEE---ecccHhhc
Confidence            3568999999999999999999999999999999999999975 666666666655443  89999875   4544    


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      |+.+..+.+++++++.++  ++.++|.|||++++++.+...|+++||+||+|.++.||.++.+++++.+++.|
T Consensus       146 G~~~~~~~l~~ik~~~~~--g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~~~  216 (217)
T COG0269         146 GKSWGEDDLEKIKKLSDL--GAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDKIW  216 (217)
T ss_pred             CCCccHHHHHHHHHhhcc--CceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhccC
Confidence            445544556666666654  48999999999999999999999999999999999999999999999998766

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=99.84  E-value=5.5e-20  Score=140.82  Aligned_cols=140  Identities=19%  Similarity=0.206  Sum_probs=117.0

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      ++++.+.++|+|+|++|.+.  .. ...++.+++.+..+|++++  |+.+..+.+.   .++|+|.++.+.|+...+...
T Consensus        72 ~~~~~a~~~gad~vh~~~~~--~~-~~~~~~~~~~~~~~g~~~~--t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~  143 (212)
T PRK00043         72 DRVDLALAVGADGVHLGQDD--LP-VADARALLGPDAIIGLSTH--TLEEAAAALA---AGADYVGVGPIFPTPTKKDAK  143 (212)
T ss_pred             ChHHHHHHcCCCEEecCccc--CC-HHHHHHHcCCCCEEEEeCC--CHHHHHHHhH---cCCCEEEECCccCCCCCCCCC
Confidence            47889999999999998764  33 4667778888999998874  7667666666   799999998888876655544


Q ss_pred             hh-HHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           87 PE-MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        87 ~~-~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +. .+++++++++..++++|.++||||.+|+.++.++|||++++||+||+++||.+.++.+++.++.+|
T Consensus       144 ~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~~~  212 (212)
T PRK00043        144 APQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRAAR  212 (212)
T ss_pred             CCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhhcC
Confidence            33 488899998887669999999999999999999999999999999999999999999998887654

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=99.77  E-value=9.7e-18  Score=126.06  Aligned_cols=131  Identities=20%  Similarity=0.190  Sum_probs=107.8

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc-c
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-M   86 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-~   86 (157)
                      +++.+.++|+|++++...  +.. ...++.++..+..+|++++  |+.+ +.+..+  .++|+|.++.+.|+..++.+ .
T Consensus        64 ~~~~a~~~g~~~vh~~~~--~~~-~~~~~~~~~~~~~~g~~~~--t~~~-~~~~~~--~g~d~i~~~~~~~~~~~~~~~~  135 (196)
T cd00564          64 RVDLALAVGADGVHLGQD--DLP-VAEARALLGPDLIIGVSTH--SLEE-ALRAEE--LGADYVGFGPVFPTPTKPGAGP  135 (196)
T ss_pred             hHHHHHHcCCCEEecCcc--cCC-HHHHHHHcCCCCEEEeeCC--CHHH-HHHHhh--cCCCEEEECCccCCCCCCCCCC
Confidence            577889999997755543  334 5777888888999999874  5544 444442  57999999999998888776 6


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      +..+++++++++. .++++.++|||+.+|+.++.++|+|++++||++|+.+||.++++.++
T Consensus       136 ~~~~~~~~~~~~~-~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~  195 (196)
T cd00564         136 PLGLELLREIAEL-VEIPVVAIGGITPENAAEVLAAGADGVAVISAITGADDPAAAARELL  195 (196)
T ss_pred             CCCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence            7788899998876 57999999999999999999999999999999999999999988875

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PLN02591 tryptophan synthase

Probab=99.66  E-value=7e-15  Score=116.11  Aligned_cols=143  Identities=17%  Similarity=0.280  Sum_probs=111.8

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-   83 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-   83 (157)
                      .++|++.+.++|+|.+.++--..++. .++.+.++++|+.....+.|+|+.++++.+.+.  .-++|-+.++ .|.+|. 
T Consensus        95 ~~~F~~~~~~aGv~GviipDLP~ee~-~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~--~~gFIY~Vs~-~GvTG~~  170 (250)
T PLN02591         95 IDKFMATIKEAGVHGLVVPDLPLEET-EALRAEAAKNGIELVLLTTPTTPTERMKAIAEA--SEGFVYLVSS-TGVTGAR  170 (250)
T ss_pred             HHHHHHHHHHcCCCEEEeCCCCHHHH-HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh--CCCcEEEeeC-CCCcCCC
Confidence            47899999999999999997666666 899999999999999999999999999988853  2345544454 455554 


Q ss_pred             -ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC----CCHHHHHHHHHHHHHH
Q 031554           84 -KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA----PEPAHVISLMRKSVED  152 (157)
Q Consensus        84 -~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~----~d~~~~~~~l~~~~~~  152 (157)
                       .+.+...+.++++|+. .+.++.+.+||+ +++++++.+.|||++|+||++.+.    +++.+..+.+.+.+++
T Consensus       171 ~~~~~~~~~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~~~~~~~~~~~~~~~~~~~  244 (250)
T PLN02591        171 ASVSGRVESLLQELKEV-TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALGEAKSPEEGLKRLEKLAKS  244 (250)
T ss_pred             cCCchhHHHHHHHHHhc-CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhhhccChhHHHHHHHHHHHH
Confidence             2334445558888886 689999999999 899999999999999999998652    3455555555555543

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=99.65  E-value=5.3e-15  Score=113.99  Aligned_cols=139  Identities=20%  Similarity=0.281  Sum_probs=113.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      +.++.+.+.|||+||+.++  |.+ .....++...++.+|++++   +.+.+.+-.+  ..+|||.+..+.|.-.-+.-.
T Consensus        72 d~~dlA~~~~AdGVHlGq~--D~~-~~~ar~~~~~~~iIG~S~h---~~eea~~A~~--~g~DYv~~GpifpT~tK~~~~  143 (211)
T COG0352          72 DRVDLALAVGADGVHLGQD--DMP-LAEARELLGPGLIIGLSTH---DLEEALEAEE--LGADYVGLGPIFPTSTKPDAP  143 (211)
T ss_pred             CcHHHHHhCCCCEEEcCCc--ccc-hHHHHHhcCCCCEEEeecC---CHHHHHHHHh--cCCCEEEECCcCCCCCCCCCC
Confidence            3577888999999999998  344 6677777778889999985   5554444442  359999999888764433335


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +..++.++.+++.. .+++.+.|||+++|++++.++|||++.+-|+||.++|+..+.+++++.+....
T Consensus       144 ~~G~~~l~~~~~~~-~iP~vAIGGi~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~~~  210 (211)
T COG0352         144 PLGLEGLREIRELV-NIPVVAIGGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALEDEK  210 (211)
T ss_pred             ccCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHhhc
Confidence            66788888888774 48999999999999999999999999999999999999999999999887643

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=99.61  E-value=2.5e-14  Score=113.39  Aligned_cols=143  Identities=17%  Similarity=0.313  Sum_probs=110.0

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-   83 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-   83 (157)
                      .++|++.+.++|+|.+.++--..++. .++.+.++++|+.....+.|+||.++++.+.+.  .-.+|.+++.. |.+|. 
T Consensus       104 ~e~F~~~~~~aGvdGlIipDLP~ee~-~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~--a~gFiY~vs~~-GvTG~~  179 (259)
T PF00290_consen  104 IERFFKEAKEAGVDGLIIPDLPPEES-EELREAAKKHGLDLIPLVAPTTPEERIKKIAKQ--ASGFIYLVSRM-GVTGSR  179 (259)
T ss_dssp             HHHHHHHHHHHTEEEEEETTSBGGGH-HHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH---SSEEEEESSS-SSSSTT
T ss_pred             hHHHHHHHHHcCCCEEEEcCCChHHH-HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHh--CCcEEEeeccC-CCCCCc
Confidence            57899999999999999997766677 889999999999999999999999999999853  23444444444 54443 


Q ss_pred             c-cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHHHHHH
Q 031554           84 K-FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKSVEDA  153 (157)
Q Consensus        84 ~-~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~~~  153 (157)
                      . +.....+.++++|+.. +.++++.+||+ +++++.+. .|||++|+||++.+.     ++....++++++..++-
T Consensus       180 ~~~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~~~~~~~~~~~~~~~~~l  254 (259)
T PF00290_consen  180 TELPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENGDDAEKFLKELKEFVREL  254 (259)
T ss_dssp             SSCHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence            3 3445667799999886 99999999999 69999988 999999999998752     45667777777766653

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=99.58  E-value=6.9e-15  Score=114.96  Aligned_cols=148  Identities=20%  Similarity=0.236  Sum_probs=100.0

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhH-hcCCCCCeEEEEe--
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLV-EGANPVEMVLVMT--   75 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~-~~~~~~d~vl~m~--   75 (157)
                      |..+|.++++.+.++|+|++|||.++...++....+..+++  +..+++.+-.+.+.+.+++.. +. +.-++++..+  
T Consensus        65 i~~t~~~~i~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~-~~~~~v~~~a~~  143 (230)
T PRK00230         65 IPNTVAKAVRALAKLGVDMVNVHASGGPRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINL-SLEEQVLRLAKL  143 (230)
T ss_pred             ccccHHHHHHHHHHcCCCEEEEcccCCHHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCC-CHHHHHHHHHHH
Confidence            67899999999999999999999999887766666666654  556777643344444443211 00 0011221111  


Q ss_pred             -eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           76 -VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        76 -v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                       .+.|.+|....+..   ++.+|+..+.-.+.|.+||+++           +..+.+++|||++|+|++||+++||.+++
T Consensus       144 a~~~g~dgvv~~~~~---~~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a  220 (230)
T PRK00230        144 AQEAGLDGVVCSAQE---AAAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAY  220 (230)
T ss_pred             HHHcCCeEEEeChHH---HHHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHH
Confidence             12233332222222   3555555444445788999987           79999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 031554          144 SLMRKSVED  152 (157)
Q Consensus       144 ~~l~~~~~~  152 (157)
                      +.+++.+..
T Consensus       221 ~~i~~~i~~  229 (230)
T PRK00230        221 EAILAEIAG  229 (230)
T ss_pred             HHHHHHhhc
Confidence            999987753

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=99.56  E-value=2.5e-13  Score=107.41  Aligned_cols=123  Identities=20%  Similarity=0.349  Sum_probs=101.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCC-CeEEEEeeeCCCCCcc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPV-EMVLVMTVEPGFGGQK   84 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~-d~vl~m~v~pG~~gq~   84 (157)
                      ++|++.+.++|+|.+.++--..++. .++.+.++++|+.+...+.|+|+.++++.+.+   .. .+|.+.++. |.+|..
T Consensus       112 e~F~~~~~~~GvdGlivpDLP~ee~-~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~---~a~GFiY~vs~~-GvTG~~  186 (265)
T COG0159         112 EKFLRRAKEAGVDGLLVPDLPPEES-DELLKAAEKHGIDPIFLVAPTTPDERLKKIAE---AASGFIYYVSRM-GVTGAR  186 (265)
T ss_pred             HHHHHHHHHcCCCEEEeCCCChHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH---hCCCcEEEEecc-cccCCC
Confidence            7899999999999999997777777 78999999999999999999999999999995   33 344444444 434433


Q ss_pred             cc-h-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           85 FM-P-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        85 ~~-~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      -. . ...+.++++|+.. +.++.|.+||+ +++++++.++ ||++|+||++.+
T Consensus       187 ~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~  238 (265)
T COG0159         187 NPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK  238 (265)
T ss_pred             cccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence            22 2 3566789999886 99999999999 7999999999 999999999885

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=99.54  E-value=1.1e-13  Score=116.01  Aligned_cols=141  Identities=16%  Similarity=0.172  Sum_probs=111.0

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-cc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-KF   85 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-~~   85 (157)
                      ++++.+.+.|||+||+..+..+   ....+.+...+..+|++.  ++..|..+...   .++|||.+..+.|...-+ ..
T Consensus       268 D~~dlAl~~gAdGVHLGQeDL~---~~~aR~ilg~~~iIGvSt--Hs~eEl~~A~~---~gaDYI~lGPIFpT~TK~~~~  339 (437)
T PRK12290        268 DYWQLAIKHQAYGVHLGQEDLE---EANLAQLTDAGIRLGLST--HGYYELLRIVQ---IQPSYIALGHIFPTTTKQMPS  339 (437)
T ss_pred             CHHHHHHHcCCCEEEcChHHcc---hhhhhhhcCCCCEEEEec--CCHHHHHHHhh---cCCCEEEECCccCCCCCCCCC
Confidence            4678889999999999987533   344455555678888887  45555445444   689999999888764433 34


Q ss_pred             chhHHHHHHHHHhhC--------CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554           86 MPEMMDKVRSLRNRY--------PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~--------~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~  155 (157)
                      .+..+++++++++..        .++++.+.|||+.+|+.++.++||+++.+-|+|++++||.++++.|++.+..++.
T Consensus       340 ~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~~~~  417 (437)
T PRK12290        340 KPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAENQL  417 (437)
T ss_pred             CCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhhcCC
Confidence            556777887777654        2699999999999999999999999999999999999999999999998876543

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.54  E-value=3.9e-13  Score=106.75  Aligned_cols=128  Identities=18%  Similarity=0.251  Sum_probs=101.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      ..++|++.+.++|+|.+.++--..++. .++.+.++++|+.....+.|+|+.++++.+.+.  ..++|.+.++..-++.+
T Consensus       105 G~e~f~~~~~~aGvdGviipDLp~ee~-~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~--s~gfIY~vs~~GvTG~~  181 (258)
T PRK13111        105 GVERFAADAAEAGVDGLIIPDLPPEEA-EELRAAAKKHGLDLIFLVAPTTTDERLKKIASH--ASGFVYYVSRAGVTGAR  181 (258)
T ss_pred             CHHHHHHHHHHcCCcEEEECCCCHHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCcc
Confidence            457899999999999999986655555 889999999999999999999999999888853  34555554554223322


Q ss_pred             -ccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCC
Q 031554           84 -KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        84 -~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                       .+.+...+.++++|+.. +.++.+.||| +++++.++.+. ||++|+||++.+.
T Consensus       182 ~~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~  234 (258)
T PRK13111        182 SADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKI  234 (258)
T ss_pred             cCCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHH
Confidence             33445666889988865 8999999999 57999999875 9999999998753

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.49  E-value=9.8e-13  Score=102.28  Aligned_cols=137  Identities=12%  Similarity=0.125  Sum_probs=99.0

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      +.++.+.+.|+|+||+..+.  .+ ....+.....+..+|++.  .++.+.+.+-.+  .++|||.+..+.+.+. ....
T Consensus        78 d~~dlA~~~~adGVHLg~~d--~~-~~~~r~~~~~~~iiG~s~--~~s~~~a~~A~~--~gaDYv~~Gpv~t~tK-~~~~  149 (221)
T PRK06512         78 GDSRIAGRVKADGLHIEGNL--AA-LAEAIEKHAPKMIVGFGN--LRDRHGAMEIGE--LRPDYLFFGKLGADNK-PEAH  149 (221)
T ss_pred             CHHHHHHHhCCCEEEECccc--cC-HHHHHHhcCCCCEEEecC--CCCHHHHHHhhh--cCCCEEEECCCCCCCC-CCCC
Confidence            35788889999999999763  23 232332223345566653  234443333222  5899999987754221 1233


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +..++.++.+++. .++++.+-|||+.+|+.++.++||+++.+-|+|++++||.+++++|++.++.
T Consensus       150 p~gl~~l~~~~~~-~~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~  214 (221)
T PRK06512        150 PRNLSLAEWWAEM-IEIPCIVQAGSDLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE  214 (221)
T ss_pred             CCChHHHHHHHHh-CCCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence            4456777777765 4799999999999999999999999999999999999999999999998875

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=99.47  E-value=3.3e-12  Score=98.59  Aligned_cols=130  Identities=18%  Similarity=0.283  Sum_probs=100.5

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      .+++.+.++|||+|++.....+ +.+.++++.++..|+.+.+.++   ..+.++...+  ..+|++.+-    +.+++.+
T Consensus        85 ~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~~~~--~g~~~i~~t----~~~~~~~  155 (217)
T cd00331          85 YQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVH---DEEELERALA--LGAKIIGIN----NRDLKTF  155 (217)
T ss_pred             HHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHH--cCCCEEEEe----CCCcccc
Confidence            5899999999999998765544 3447788888888998877774   4444555544  478998653    4445554


Q ss_pred             chhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554           86 MPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM  146 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l  146 (157)
                      .+. ++.++++++.. .+.++.+-|||+ ++++.++.++|||++++||+|++..||.+.+++|
T Consensus       156 ~~~-~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~~  217 (217)
T cd00331         156 EVD-LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALREL  217 (217)
T ss_pred             CcC-HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHhC
Confidence            433 47778888775 468999999997 6999999999999999999999999999888753

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=99.47  E-value=1.8e-12  Score=98.30  Aligned_cols=131  Identities=16%  Similarity=0.134  Sum_probs=92.6

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-Ccccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQKFM   86 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq~~~   86 (157)
                      +++.+.+.|+|.|++.....+   ....+.....+..+|+++  ++..+..+ ..+  .++||+.+-.+.|... .+...
T Consensus        65 ~~~la~~~g~~GvHl~~~~~~---~~~~r~~~~~~~~ig~s~--h~~~e~~~-a~~--~g~dyi~~~~v~~t~~k~~~~~  136 (196)
T TIGR00693        65 RVDLALALGADGVHLGQDDLP---ASEARALLGPDKIIGVST--HNLEELAE-AEA--EGADYIGFGPIFPTPTKKDPAP  136 (196)
T ss_pred             HHHHHHHcCCCEEecCcccCC---HHHHHHhcCCCCEEEEeC--CCHHHHHH-HhH--cCCCEEEECCccCCCCCCCCCC
Confidence            467788999999999754322   334444444566677766  45444333 332  5899998765544211 11112


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM  146 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l  146 (157)
                      +..++.++++++..++++|.+-|||+++|++++.++|+|++++||+|++++||.++++.|
T Consensus       137 ~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l  196 (196)
T TIGR00693       137 PAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL  196 (196)
T ss_pred             CCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence            234667777777666789999999999999999999999999999999999999888753

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.46  E-value=3e-12  Score=98.94  Aligned_cols=137  Identities=18%  Similarity=0.147  Sum_probs=99.4

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-ccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-KFM   86 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-~~~   86 (157)
                      +++.+.+.|+|+||+..+..  + ....+.++..+..+|+++  ++..+..+..-   .++||+.+-.+.|...-+ .-.
T Consensus        71 ~~~lA~~~~adGVHlg~~d~--~-~~~~r~~~~~~~~iG~S~--H~~~e~~~A~~---~gaDYi~lgpvf~T~tK~~~~~  142 (211)
T PRK03512         71 YWRLAIKHQAYGVHLGQEDL--E-TADLNAIRAAGLRLGVST--HDDMEIDVALA---ARPSYIALGHVFPTQTKQMPSA  142 (211)
T ss_pred             HHHHHHHcCCCEEEcChHhC--C-HHHHHHhcCCCCEEEEeC--CCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCC
Confidence            56788889999999986532  2 233334433455667776  45444333333   589999998776543221 112


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +..++.++++.+...++++.+-|||+.+|+.++.++|++++.+-|+|++++||.++++++++.+..
T Consensus       143 ~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~~~  208 (211)
T PRK03512        143 PQGLAQLARHVERLADYPTVAIGGISLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELAEV  208 (211)
T ss_pred             CCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHHhh
Confidence            234566677666545799999999999999999999999999999999999999999999987764

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.45  E-value=2.2e-12  Score=106.17  Aligned_cols=137  Identities=16%  Similarity=0.147  Sum_probs=100.2

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP   87 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~   87 (157)
                      +++.+...|+|+||+..+.  -+ ....+.+...+..+|+++  +++.+..+..-   .++|||.+..+.|...-....+
T Consensus       209 ~vdlAl~~~aDGVHLgq~d--l~-~~~aR~llg~~~iIG~S~--Hs~~e~~~A~~---~GaDYI~lGPvf~T~tKp~~~~  280 (347)
T PRK02615        209 RVDIALAVDADGVHLGQED--LP-LAVARQLLGPEKIIGRST--TNPEEMAKAIA---EGADYIGVGPVFPTPTKPGKAP  280 (347)
T ss_pred             hHHHHHHcCCCEEEeChhh--cC-HHHHHHhcCCCCEEEEec--CCHHHHHHHHH---cCCCEEEECCCcCCCCCCCCCC
Confidence            5778899999999998653  23 222233322345566666  45555444444   6899999876655322211223


Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      -.++.++.+++.. ++++.+-|||+++|+.++.++|+++|.++|+|++++||.++++.+.+.+...
T Consensus       281 ~Gle~l~~~~~~~-~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~~  345 (347)
T PRK02615        281 AGLEYLKYAAKEA-PIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSRE  345 (347)
T ss_pred             CCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhcc
Confidence            4577788877754 6899999999999999999999999999999999999999999999887653

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=99.45  E-value=5.5e-12  Score=97.13  Aligned_cols=125  Identities=22%  Similarity=0.273  Sum_probs=99.5

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP   87 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~   87 (157)
                      .++.+.++|||+++.+..   +  .+.+++++..|..+++.+  .|+-|..+.+-   .++|||.+   .|.   ..+  
T Consensus        75 ~~~~a~~aGA~fivsp~~---~--~~v~~~~~~~~~~~~~G~--~t~~E~~~A~~---~Gad~vk~---Fpa---~~~--  136 (206)
T PRK09140         75 QVDRLADAGGRLIVTPNT---D--PEVIRRAVALGMVVMPGV--ATPTEAFAALR---AGAQALKL---FPA---SQL--  136 (206)
T ss_pred             HHHHHHHcCCCEEECCCC---C--HHHHHHHHHCCCcEEccc--CCHHHHHHHHH---cCCCEEEE---CCC---CCC--
Confidence            678999999999999864   2  588888888998877774  67766666665   68999986   353   122  


Q ss_pred             hHHHHHHHHHhhCC-CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC----CCHHHHHHHHHHHHH
Q 031554           88 EMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA----PEPAHVISLMRKSVE  151 (157)
Q Consensus        88 ~~~~ki~~l~~~~~-~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~----~d~~~~~~~l~~~~~  151 (157)
                       .++.++++++..+ ++++.+.||||++|++++.++|+|.+.+||+||++    +++.+..+.+++.++
T Consensus       137 -G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~~~~  204 (206)
T PRK09140        137 -GPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVAAYR  204 (206)
T ss_pred             -CHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHHHHh
Confidence             3566777888775 79999999999999999999999999999999986    667777777766554

>PRK07695 transcriptional regulator TenI; Provisional

Probab=99.44  E-value=6.3e-12  Score=96.08  Aligned_cols=135  Identities=14%  Similarity=0.178  Sum_probs=97.0

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP   87 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~   87 (157)
                      +.+.+.+.|+|.||+..+.  .++....+..  .+..+|+.++  + .+.+.+..+  .++|++.+..+.|....+...+
T Consensus        65 ~~~la~~~~~~gvHl~~~~--~~~~~~r~~~--~~~~ig~s~~--s-~e~a~~a~~--~Gadyi~~g~v~~t~~k~~~~~  135 (201)
T PRK07695         65 RVDIALLLNIHRVQLGYRS--FSVRSVREKF--PYLHVGYSVH--S-LEEAIQAEK--NGADYVVYGHVFPTDCKKGVPA  135 (201)
T ss_pred             HHHHHHHcCCCEEEeCccc--CCHHHHHHhC--CCCEEEEeCC--C-HHHHHHHHH--cCCCEEEECCCCCCCCCCCCCC
Confidence            4567888899999998653  2212222222  2677888653  3 444544443  5899998765555433222233


Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      ..++.++++++.. ++++.+-|||+++|+.++.++|+|++.+||+|++++||.++++++++.+++
T Consensus       136 ~g~~~l~~~~~~~-~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~  199 (201)
T PRK07695        136 RGLEELSDIARAL-SIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKK  199 (201)
T ss_pred             CCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhh
Confidence            3466777777653 699999999999999999999999999999999999999999999988743

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=99.43  E-value=9.9e-12  Score=98.83  Aligned_cols=134  Identities=19%  Similarity=0.293  Sum_probs=99.9

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      .+|. .+.++.++|||+|++.....+ ..+.++++.+++.|+.+-+.++  +..+ ++...+  .++|+|.+   + +.+
T Consensus       121 ~~~~-qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh--~~~E-~~~A~~--~gadiIgi---n-~rd  190 (260)
T PRK00278        121 IDPY-QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVH--DEEE-LERALK--LGAPLIGI---N-NRN  190 (260)
T ss_pred             CCHH-HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeC--CHHH-HHHHHH--cCCCEEEE---C-CCC
Confidence            3455 789999999999999988743 3558999999999999888885  3332 233332  47898864   4 223


Q ss_pred             CcccchhHHHHHHHHHhhCCC-CcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           82 GQKFMPEMMDKVRSLRNRYPS-LDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      -+.|.+. ++...++.+..|+ ..+.+-||| +++++..+.++|+|++++||+|.+++||.+.++.|.
T Consensus       191 l~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~  257 (260)
T PRK00278        191 LKTFEVD-LETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALRELL  257 (260)
T ss_pred             cccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHh
Confidence            3344333 6667777776654 355555666 699999999999999999999999999999988775

>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=99.40  E-value=7.9e-13  Score=102.56  Aligned_cols=149  Identities=13%  Similarity=0.147  Sum_probs=98.4

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceE-EEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPG-VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~g-l~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      -|....+.+.++|+|++++|.-+....+....+..+++|..+- -.+...|+ +..+++.++ ..-++++..+......|
T Consensus        68 Ip~tv~~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~t~-~~~~~l~~~-g~~~~v~h~a~~a~~~G  145 (218)
T PRK13305         68 AGETLAQQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNWTL-DDARDWHRI-GVRQAIYHRGRDAQASG  145 (218)
T ss_pred             ChHHHHHHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEecCc-chHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence            3666777888999999999987655554555555555454321 11221222 222333222 22233333332222223


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN  156 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~~  156 (157)
                      .-+.+.-++.++++..  +++++.|.|||++++.+...+.++|.+|+||+|++++||.++++++++.++..|+.
T Consensus       146 ~v~s~~e~~~ir~~~~--~~~~i~VtpGIr~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~~i~~~~~~  217 (218)
T PRK13305        146 QQWGEADLARMKALSD--IGLELSITGGITPADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHAQIDAIWGG  217 (218)
T ss_pred             CCCCHHHHHHHHHHhC--CCCcEEEeCCcCccccccccccCCCEEEECCcccCCCCHHHHHHHHHHHHHHhhcC
Confidence            3334444555655543  36889999999999999999999999999999999999999999999999988864

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=99.34  E-value=4.9e-11  Score=88.62  Aligned_cols=124  Identities=21%  Similarity=0.257  Sum_probs=92.6

Q ss_pred             cChHHHH----HHHHhCCCCEEEEcccCCcc---hHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEE
Q 031554            3 TNPLDYV----EPLGKAGASGFTFHVEISKD---NWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLV   73 (157)
Q Consensus         3 ~~p~~~i----~~~~~~gad~v~vh~e~~~~---~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~   73 (157)
                      .++..++    ..+.++|+|+|.+|.+....   . .++++.+++.  ++.+++.+++.+......-..   ..+|++.+
T Consensus        67 ~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~-~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~---~g~d~i~~  142 (200)
T cd04722          67 NDAAAAVDIAAAAARAAGADGVEIHGAVGYLARED-LELIRELREAVPDVKVVVKLSPTGELAAAAAEE---AGVDEVGL  142 (200)
T ss_pred             CCchhhhhHHHHHHHHcCCCEEEEeccCCcHHHHH-HHHHHHHHHhcCCceEEEEECCCCccchhhHHH---cCCCEEEE
Confidence            4455555    37889999999999886431   4 6888999987  899999998877665432122   57899999


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH-hhHHHHHHcCCCEEEEcc
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGS  131 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~Gad~vV~GS  131 (157)
                      ....++..++...+.....++++++ ..+++|.++|||+. +++.++.++|||++.+||
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs  200 (200)
T cd04722         143 GNGGGGGGGRDAVPIADLLLILAKR-GSKVPVIAGGGINDPEDAAEALALGADGVIVGS  200 (200)
T ss_pred             cCCcCCCCCccCchhHHHHHHHHHh-cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence            8777765555444333344555444 35799999999997 999999999999999997

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=99.34  E-value=4.1e-11  Score=103.14  Aligned_cols=142  Identities=17%  Similarity=0.152  Sum_probs=104.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      ++++.+.+.|+|.||+..+..  + ....+.....+..+|+++  ++..+..+..-   .++|||.+-.+.|...-....
T Consensus       358 d~~~lA~~~~adGvHl~~~d~--~-~~~~r~~~~~~~~iG~S~--h~~~e~~~a~~---~gadyi~~gpif~t~tk~~~~  429 (502)
T PLN02898        358 DRVDVALACDADGVHLGQSDM--P-VRLARSLLGPGKIIGVSC--KTPEQAEQAWK---DGADYIGCGGVFPTNTKANNK  429 (502)
T ss_pred             ChHHHHHhcCCCEEEeChHhc--C-HHHHHHhcCCCCEEEEeC--CCHHHHHHHhh---cCCCEEEECCeecCCCCCCCC
Confidence            357788899999999986632  2 233333333356667776  56655444444   689999987776643322123


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCC---EEEEcccccCCCCHHHHHHHHHHHHHHHhhcC
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN---CIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS  157 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad---~vV~GSai~~~~d~~~~~~~l~~~~~~~~~~~  157 (157)
                      +-.++.++++.+. .++++.+-|||+++|++++.++|++   ++.++|+|++++||.++++.+++.+...-|.|
T Consensus       430 ~~g~~~~~~~~~~-~~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~~~~~~~  502 (502)
T PLN02898        430 TIGLDGLREVCEA-SKLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILTEALSES  502 (502)
T ss_pred             CCCHHHHHHHHHc-CCCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence            3456777777665 4789999999999999999999999   99999999999999999999999887655443

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=99.32  E-value=5.8e-11  Score=92.34  Aligned_cols=124  Identities=19%  Similarity=0.260  Sum_probs=94.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      ...++++.+.++|+|.|.+|..   .+ .++++.+++.++.++..+.+   .+.++.+.+  ..+|+|.+.+..+|..+.
T Consensus        68 ~~~~~~~~~~~~g~d~v~l~~~---~~-~~~~~~~~~~~i~~i~~v~~---~~~~~~~~~--~gad~i~~~~~~~~G~~~  138 (236)
T cd04730          68 DFEALLEVALEEGVPVVSFSFG---PP-AEVVERLKAAGIKVIPTVTS---VEEARKAEA--AGADALVAQGAEAGGHRG  138 (236)
T ss_pred             CHHHHHHHHHhCCCCEEEEcCC---CC-HHHHHHHHHcCCEEEEeCCC---HHHHHHHHH--cCCCEEEEeCcCCCCCCC
Confidence            3567899999999999999976   34 68899999999888776642   344454443  468999887654443333


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCH-hhHHHHHHcCCCEEEEcccccCCC
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      .+....++.++++++.. +.++.+.|||+. +++.++.++|||++++||++++..
T Consensus       139 ~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~  192 (236)
T cd04730         139 TFDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE  192 (236)
T ss_pred             ccccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence            33234566777777654 689999999996 999999999999999999998754

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.31  E-value=1.3e-10  Score=90.01  Aligned_cols=128  Identities=17%  Similarity=0.131  Sum_probs=97.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +++ .++.+.++||+++.-+.-    . .+++++++++|+-.---.  .||-|..+.+.   .++|+|-+   .|.   .
T Consensus        77 ~~~-~~~~a~~aGA~FivsP~~----~-~~v~~~~~~~~i~~iPG~--~T~~E~~~A~~---~Gad~vkl---FPa---~  139 (213)
T PRK06552         77 DAV-TARLAILAGAQFIVSPSF----N-RETAKICNLYQIPYLPGC--MTVTEIVTALE---AGSEIVKL---FPG---S  139 (213)
T ss_pred             CHH-HHHHHHHcCCCEEECCCC----C-HHHHHHHHHcCCCEECCc--CCHHHHHHHHH---cCCCEEEE---CCc---c
Confidence            444 568889999999885532    2 689999999998654433  46666666665   79999986   452   1


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC------CCHHHHHHHHHHHHH
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA------PEPAHVISLMRKSVE  151 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~------~d~~~~~~~l~~~~~  151 (157)
                      .+   ..+.++.++..++++++.+.||||.+|+.++.++|++++.+||.+++.      +++.+.++++.+.++
T Consensus       140 ~~---G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~  210 (213)
T PRK06552        140 TL---GPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR  210 (213)
T ss_pred             cC---CHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence            22   255678888888899999999999999999999999999999999976      345666666665554

>PRK04302 triosephosphate isomerase; Provisional

Probab=99.29  E-value=3.1e-10  Score=88.24  Aligned_cols=139  Identities=22%  Similarity=0.300  Sum_probs=98.7

Q ss_pred             HHHHHHHHhCCCCEEEEcc-c--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-CCC
Q 031554            6 LDYVEPLGKAGASGFTFHV-E--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP-GFG   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~-e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-G~~   81 (157)
                      +.+++++.++|+|+|.+.. |  .+.+.+.+.++.++++|+.+.+.+  ++ .+.++.+.+  ...|+|.++.+.. |++
T Consensus        75 ~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v--~~-~~~~~~~~~--~~~~~I~~~p~~~igt~  149 (223)
T PRK04302         75 HILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCV--NN-PETSAAAAA--LGPDYVAVEPPELIGTG  149 (223)
T ss_pred             hhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEc--CC-HHHHHHHhc--CCCCEEEEeCccccccC
Confidence            4568899999999999885 2  112223788889999999888544  33 444555543  3578887765431 332


Q ss_pred             --CcccchhHHH-HHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           82 --GQKFMPEMMD-KVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        82 --gq~~~~~~~~-ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                        .+...++.++ .++.+|+...+.+|.+.|||+ ++.+..+.+.|+|++++||++.+.+||.+.++.|.+.
T Consensus       150 ~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~~  221 (223)
T PRK04302        150 IPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVSP  221 (223)
T ss_pred             CCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHhh
Confidence              1112344433 355566655578999999996 7888999999999999999999999999998887653

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=99.27  E-value=6.2e-12  Score=97.15  Aligned_cols=130  Identities=19%  Similarity=0.240  Sum_probs=85.3

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCce-EEE-e-cCCC-----CH-HhHHhhHhcCCCCCeEEEE
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRP-GVA-L-KPGT-----SV-EEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~-gl~-l-~~~t-----~~-~~~~~~~~~~~~~d~vl~m   74 (157)
                      .+..+++.+++.|||++|+|.++..+.+..+++.++++|..+ +++ + |+..     ++ +.+..+..   ...     
T Consensus        64 t~~~~~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~~~~~~~~~v~~~a~---~~~-----  135 (213)
T TIGR01740        64 TVKLQYESKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSLDYGEDTMEKVLEYAK---EAK-----  135 (213)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhhhCcCHHHHHHHHHH---Hhh-----
Confidence            456788889999999999999998887688898888877443 333 2 2221     11 11222211   110     


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh---hH--------HHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS---TI--------AEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~---~i--------~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                        .-|..|--..+...+.++   +..++ .+.+.+||+++   ..        +.+.++|||.+|+||+||+++||.+++
T Consensus       136 --~~g~~g~v~~~~~~~~ir---~~~~~-~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~  209 (213)
T TIGR01740       136 --AFGLDGPVCSAEEAKEIR---KFTGD-FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAA  209 (213)
T ss_pred             --hcCCeEEEeCHHHHHHHH---HhcCC-ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHH
Confidence              012222222344444444   44333 46799999876   33        889999999999999999999999998


Q ss_pred             HHHH
Q 031554          144 SLMR  147 (157)
Q Consensus       144 ~~l~  147 (157)
                      +.++
T Consensus       210 ~~~~  213 (213)
T TIGR01740       210 KRIR  213 (213)
T ss_pred             HHhC
Confidence            8764

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.26  E-value=1.7e-10  Score=87.65  Aligned_cols=112  Identities=19%  Similarity=0.085  Sum_probs=88.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      +.++.+.++|||+++.+...     .+.++..+.++...  .+...|+-+..+.+.   .++|||-+   .|..   .  
T Consensus        75 d~~~~A~~~gAdgv~~p~~~-----~~~~~~~~~~~~~~--i~G~~t~~e~~~A~~---~Gadyv~~---Fpt~---~--  136 (187)
T PRK07455         75 EDLEEAIAAGAQFCFTPHVD-----PELIEAAVAQDIPI--IPGALTPTEIVTAWQ---AGASCVKV---FPVQ---A--  136 (187)
T ss_pred             HHHHHHHHcCCCEEECCCCC-----HHHHHHHHHcCCCE--EcCcCCHHHHHHHHH---CCCCEEEE---CcCC---c--
Confidence            68899999999999888653     35666777777653  233578887777776   79999987   4641   1  


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ...++.++++++..+++++.+.||||++|++++.++||+++.+||+||+.
T Consensus       137 ~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~~  186 (187)
T PRK07455        137 VGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPK  186 (187)
T ss_pred             ccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhcccC
Confidence            22466788888887889999999999999999999999999999999963

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=99.26  E-value=2e-10  Score=91.44  Aligned_cols=138  Identities=17%  Similarity=0.160  Sum_probs=98.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC---
Q 031554            7 DYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG---   82 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g---   82 (157)
                      .-++.+.++|+|+|-   |+. ..|..++++.+|.. ..+=+.....|--|.++..-   .+.|+|-- +.++|++.   
T Consensus        80 ~Ea~~L~~~GvDiID---eTe~lrPade~~~~~K~~-f~vpfmad~~~l~EAlrai~---~GadmI~T-t~e~gTg~v~~  151 (287)
T TIGR00343        80 VEAQILEALGVDYID---ESEVLTPADWTFHIDKKK-FKVPFVCGARDLGEALRRIN---EGAAMIRT-KGEAGTGNIVE  151 (287)
T ss_pred             HHHHHHHHcCCCEEE---ccCCCCcHHHHHHHHHHH-cCCCEEccCCCHHHHHHHHH---CCCCEEec-cccCCCccHHH
Confidence            346778999999993   332 23446677777663 34444455556566677777   78998843 22334332   


Q ss_pred             ---------------c------------ccchhHHHHHHHHHhhCCCCcEE--EEcCC-CHhhHHHHHHcCCCEEEEccc
Q 031554           83 ---------------Q------------KFMPEMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        83 ---------------q------------~~~~~~~~ki~~l~~~~~~~~I~--vdGGI-~~~~i~~~~~~Gad~vV~GSa  132 (157)
                                     +            +-....++.++++++.. ++++.  +.||| |++++..+.+.|||++++||+
T Consensus       152 av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSa  230 (287)
T TIGR00343       152 AVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSG  230 (287)
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHH
Confidence                           0            00122456677777653 58888  99999 999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHH
Q 031554          133 VFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus       133 i~~~~d~~~~~~~l~~~~~~~  153 (157)
                      ||+++||.+..++|.+.+..+
T Consensus       231 I~ks~dP~~~akafv~ai~~~  251 (287)
T TIGR00343       231 IFKSSNPEKLAKAIVEATTHY  251 (287)
T ss_pred             hhcCCCHHHHHHHHHHHHHHc
Confidence            999999999999999988764

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=99.25  E-value=2.4e-10  Score=87.43  Aligned_cols=120  Identities=19%  Similarity=0.271  Sum_probs=86.2

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc-CCceE--EEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC-
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK-GMRPG--VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG-   79 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g~~~g--l~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG-   79 (157)
                      ++....+.+.+.|+|+|++|...   + ...++.+|+. |.++.  +.++.++..+....+.   ..+||+++-+-.++ 
T Consensus        61 ~~~~i~~ia~~~~~d~Vqlhg~e---~-~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~---~~aD~il~dt~~~~~  133 (203)
T cd00405          61 DLEEILEIAEELGLDVVQLHGDE---S-PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYA---GEVDAILLDSKSGGG  133 (203)
T ss_pred             CHHHHHHHHHhcCCCEEEECCCC---C-HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhcc---ccCCEEEEcCCCCCC
Confidence            34566678889999999999763   3 3566777763 55555  4454444544445555   68999998765443 


Q ss_pred             --CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEEEcccccCC
Q 031554           80 --FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGA  136 (157)
Q Consensus        80 --~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~GSai~~~  136 (157)
                        ..|+.+.-+.+   ++++   ..+++.+.||||++|+.++.+.| ++++.++|++..+
T Consensus       134 ~Gg~g~~~~~~~l---~~~~---~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~  187 (203)
T cd00405         134 GGGTGKTFDWSLL---RGLA---SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETS  187 (203)
T ss_pred             CCCCcceEChHHh---hccc---cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCC
Confidence              24566554444   4333   46899999999999999999999 9999999999976

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=99.24  E-value=5.5e-10  Score=88.90  Aligned_cols=137  Identities=17%  Similarity=0.144  Sum_probs=97.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-   83 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-   83 (157)
                      ..-++.+.++|+|+|-   ++. ..|..++++.+|..- ..-+.-...|--|.++..-   .+.|+|-- +.. |+.+. 
T Consensus        77 ~~Ea~~L~eaGvDiID---aT~r~rP~~~~~~~iK~~~-~~l~MAD~stleEal~a~~---~Gad~I~T-Tl~-gyT~~~  147 (283)
T cd04727          77 FVEAQILEALGVDMID---ESEVLTPADEEHHIDKHKF-KVPFVCGARNLGEALRRIS---EGAAMIRT-KGE-AGTGNV  147 (283)
T ss_pred             HHHHHHHHHcCCCEEe---ccCCCCcHHHHHHHHHHHc-CCcEEccCCCHHHHHHHHH---CCCCEEEe-cCC-CCCCcH
Confidence            3456788999999993   322 235467888888842 2333333344445566666   78999853 222 33333 


Q ss_pred             ------------------ccc-----------hhHHHHHHHHHhhCCCCcEE--EEcCC-CHhhHHHHHHcCCCEEEEcc
Q 031554           84 ------------------KFM-----------PEMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        84 ------------------~~~-----------~~~~~ki~~l~~~~~~~~I~--vdGGI-~~~~i~~~~~~Gad~vV~GS  131 (157)
                                        .+.           +..++.++++++.. ++++.  +.||| +++++.++.++|||++++||
T Consensus       148 ~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGS  226 (283)
T cd04727         148 VEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGS  226 (283)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence                              111           22456677777764 57886  99999 99999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHHHHH
Q 031554          132 SVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       132 ai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +||+++||.+..++|++.+..
T Consensus       227 AI~~a~dP~~~tk~f~~ai~~  247 (283)
T cd04727         227 GIFKSENPEKRARAIVEAVTH  247 (283)
T ss_pred             HhhcCCCHHHHHHHHHHHHHh
Confidence            999999999999999998764

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=99.24  E-value=5e-10  Score=86.74  Aligned_cols=127  Identities=20%  Similarity=0.270  Sum_probs=88.8

Q ss_pred             HHHHHHHhCCCCEEEEcccC---Cc-chHHHHHHHHHH-cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEI---SK-DNWQELVQRIKS-KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~---~~-~~~~~~i~~ir~-~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      ++++.+.++|||+|.+-.-.   ++ +.+.++++++++ .++.+...+   ++.+++....+  .++|++.+-  .-|..
T Consensus        79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v---~t~ee~~~a~~--~G~d~i~~~--~~g~t  151 (221)
T PRK01130         79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADC---STLEEGLAAQK--LGFDFIGTT--LSGYT  151 (221)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeC---CCHHHHHHHHH--cCCCEEEcC--Cceee
Confidence            47899999999988875322   11 333789999999 676655433   34555555554  578988541  11222


Q ss_pred             Cc--ccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHH
Q 031554           82 GQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAH  141 (157)
Q Consensus        82 gq--~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~  141 (157)
                      +.  ...+..++.++++++.. ++++.+.||| +++++.++.++|||++++||+|++..++.+
T Consensus       152 ~~~~~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~~~  213 (221)
T PRK01130        152 EETKKPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEITK  213 (221)
T ss_pred             cCCCCCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHHHH
Confidence            22  12233466788888765 7899999999 599999999999999999999997555444

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=99.22  E-value=3.4e-10  Score=87.56  Aligned_cols=127  Identities=18%  Similarity=0.266  Sum_probs=87.8

Q ss_pred             HHHHHHHhCCCCEEEEcccC---Cc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEI---SK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~---~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      .+++.+.++|||+|.+-...   +. ..+.+++++++++| ..-+.+.+.|+-+... ..+  .++|++.+-  .-|+.+
T Consensus        83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~-a~~--~G~d~i~~~--~~g~t~  156 (219)
T cd04729          83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALN-AAK--LGFDIIGTT--LSGYTE  156 (219)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHH-HHH--cCCCEEEcc--Cccccc
Confidence            37899999999998885322   11 13388999999998 3333344455544433 333  589988431  113322


Q ss_pred             cc--cchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHH
Q 031554           83 QK--FMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPA  140 (157)
Q Consensus        83 q~--~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~  140 (157)
                      +.  .....++.++++++.. +.++.+.||| +++++.++.++|||++.+||+|++.+|+-
T Consensus       157 ~~~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~  216 (219)
T cd04729         157 ETAKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEHIT  216 (219)
T ss_pred             cccCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHh
Confidence            21  1123456777777765 7999999999 58999999999999999999999887764

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=99.21  E-value=2.8e-10  Score=102.31  Aligned_cols=144  Identities=13%  Similarity=0.158  Sum_probs=99.8

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~   85 (157)
                      +++.+.+.|+| ||+..+  +.+ ....+.....+..+|++++....++.+.....-..  ++||+.+..+.|...-..-
T Consensus        71 ~~~la~~~~~d-VHlg~~--dl~-~~~~r~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~  146 (755)
T PRK09517         71 RLDVAVELGLH-VHIGQG--DTP-YTQARRLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDA  146 (755)
T ss_pred             hHHHHHHcCCC-eecCCC--cCC-HHHHHHhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCC
Confidence            56788899999 555554  343 34444444445677887742222222222210001  4899999877664322111


Q ss_pred             -chhHHHHHHHHHhhCC--CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554           86 -MPEMMDKVRSLRNRYP--SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        86 -~~~~~~ki~~l~~~~~--~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~  155 (157)
                       .+-.++.++++++...  ++++.+-|||+++|++++.++||+++.+.|+|++++||.++++++++.+...++
T Consensus       147 ~~~lG~~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~~~~~~  219 (755)
T PRK09517        147 PPALGVDGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAFQPTRS  219 (755)
T ss_pred             CCCCCHHHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHHHHhhc
Confidence             1235677888887764  499999999999999999999999999999999999999999999998876543

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=99.20  E-value=4e-10  Score=85.56  Aligned_cols=111  Identities=19%  Similarity=0.184  Sum_probs=85.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      .+.++.+.++|+|+++.+..    . .++++.++++|..+-+-+  .|+-+..+.+-   .++|+|.+   .|.      
T Consensus        66 ~~~~~~a~~~Ga~~i~~p~~----~-~~~~~~~~~~~~~~i~gv--~t~~e~~~A~~---~Gad~i~~---~p~------  126 (190)
T cd00452          66 PEQADAAIAAGAQFIVSPGL----D-PEVVKAANRAGIPLLPGV--ATPTEIMQALE---LGADIVKL---FPA------  126 (190)
T ss_pred             HHHHHHHHHcCCCEEEcCCC----C-HHHHHHHHHcCCcEECCc--CCHHHHHHHHH---CCCCEEEE---cCC------
Confidence            34678899999999986643    2 578888888887654433  46655555554   68999987   342      


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .+...+.++.+++..+++++.+-||||++|+.++.++|+|.+++||++|+
T Consensus       127 ~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~  176 (190)
T cd00452         127 EAVGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPK  176 (190)
T ss_pred             cccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcch
Confidence            11244566777777778999999999999999999999999999999993

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=99.20  E-value=6.8e-10  Score=83.55  Aligned_cols=117  Identities=18%  Similarity=0.165  Sum_probs=82.4

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP   87 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~   87 (157)
                      +++.+.+.|+|.||+.....  + ....+.....+..+|.+++  +..+..+...   .++||+.+-.+.|...-....+
T Consensus        64 ~~~la~~~~~dGvHl~~~~~--~-~~~~r~~~~~~~~ig~S~h--~~~e~~~a~~---~g~dYv~~gpvf~T~sk~~~~~  135 (180)
T PF02581_consen   64 RVDLALELGADGVHLGQSDL--P-PAEARKLLGPDKIIGASCH--SLEEAREAEE---LGADYVFLGPVFPTSSKPGAPP  135 (180)
T ss_dssp             -HHHHHHCT-SEEEEBTTSS--S-HHHHHHHHTTTSEEEEEES--SHHHHHHHHH---CTTSEEEEETSS--SSSSS-TT
T ss_pred             CHHHHHhcCCCEEEeccccc--c-hHHhhhhcccceEEEeecC--cHHHHHHhhh---cCCCEEEECCccCCCCCccccc
Confidence            56788899999999998643  3 3444555556788898884  4444333333   5899999987766544333355


Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccc
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai  133 (157)
                      -.++.++++++.. .+++.+-|||+++|+.++.++|++++.+.|+|
T Consensus       136 ~g~~~l~~~~~~~-~~pv~AlGGI~~~~i~~l~~~Ga~gvAvi~aI  180 (180)
T PF02581_consen  136 LGLDGLREIARAS-PIPVYALGGITPENIPELREAGADGVAVISAI  180 (180)
T ss_dssp             CHHHHHHHHHHHT-SSCEEEESS--TTTHHHHHHTT-SEEEESHHH
T ss_pred             cCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEeeC
Confidence            6788888888875 59999999999999999999999999999876

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=99.16  E-value=6.8e-10  Score=84.47  Aligned_cols=124  Identities=20%  Similarity=0.331  Sum_probs=98.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-   84 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~-   84 (157)
                      ++|+..+.++||+...+.--.+++. +.+-+++|++|+.....+.|.|+.++.+-+.   .-.|.+++.-..-|..|.. 
T Consensus       113 e~~iq~ak~aGanGfiivDlPpEEa-~~~Rne~~k~gislvpLvaPsTtdeRmell~---~~adsFiYvVSrmG~TG~~~  188 (268)
T KOG4175|consen  113 ENYIQVAKNAGANGFIIVDLPPEEA-ETLRNEARKHGISLVPLVAPSTTDERMELLV---EAADSFIYVVSRMGVTGTRE  188 (268)
T ss_pred             HHHHHHHHhcCCCceEeccCChHHH-HHHHHHHHhcCceEEEeeCCCChHHHHHHHH---HhhcceEEEEEeccccccHH
Confidence            6899999999999999987777777 8899999999999999999999999988887   4556655554444655432 


Q ss_pred             cchhHH-HHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554           85 FMPEMM-DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        85 ~~~~~~-~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      -..+.+ +.+.++|+...+.+++|.+||+ +|+..++-+. ||++|+||.|.
T Consensus       189 svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv  239 (268)
T KOG4175|consen  189 SVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIV  239 (268)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccceEecHHHH
Confidence            222222 2466667776789999999999 7999998877 99999999876

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=99.14  E-value=5.7e-09  Score=81.75  Aligned_cols=137  Identities=20%  Similarity=0.232  Sum_probs=98.9

Q ss_pred             HHHHHhC-CCCEEEEcccCC-----cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            9 VEPLGKA-GASGFTFHVEIS-----KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         9 i~~~~~~-gad~v~vh~e~~-----~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      .+++.|. |-|||-+-.-..     +++ .+++++++..   |+.+-..+  ..++...+.+.+.  +++.|.-++..-|
T Consensus        82 a~lare~~~~~~iKlEVi~d~~~Llpd~-~~tv~aa~~L~~~Gf~vlpyc--~dd~~~ar~l~~~--G~~~vmPlg~pIG  156 (248)
T cd04728          82 ARLAREALGTDWIKLEVIGDDKTLLPDP-IETLKAAEILVKEGFTVLPYC--TDDPVLAKRLEDA--GCAAVMPLGSPIG  156 (248)
T ss_pred             HHHHHHHhCCCeEEEEEecCccccccCH-HHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHc--CCCEeCCCCcCCC
Confidence            3444444 668887653332     245 8899999998   88655444  3455556666653  7888844434446


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      . |+..  ...+.|+.+++. .+++|.+||||+ ++++.+..+.|||.+++||+|.+++||....+.|+..++..|
T Consensus       157 s-g~Gi--~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr  228 (248)
T cd04728         157 S-GQGL--LNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGR  228 (248)
T ss_pred             C-CCCC--CCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHH
Confidence            3 3433  124556666666 578999999999 899999999999999999999999999999999999887654

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=99.10  E-value=2.2e-09  Score=85.81  Aligned_cols=138  Identities=16%  Similarity=0.171  Sum_probs=96.6

Q ss_pred             HHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc--
Q 031554            8 YVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--   84 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~--   84 (157)
                      -++.+.++|+|+|-   |+. ..|..++++.+|.. ..+=+.....|--|.++..-   .+.|+|-- +-++|++.-.  
T Consensus        88 Ea~~L~~~GvDiID---~Te~lrpad~~~~~~K~~-f~~~fmad~~~l~EAlrai~---~GadmI~T-tge~gtg~v~~a  159 (293)
T PRK04180         88 EAQILEALGVDYID---ESEVLTPADEEYHIDKWD-FTVPFVCGARNLGEALRRIA---EGAAMIRT-KGEAGTGNVVEA  159 (293)
T ss_pred             HHHHHHHcCCCEEe---ccCCCCchHHHHHHHHHH-cCCCEEccCCCHHHHHHHHH---CCCCeeec-cCCCCCccHHHH
Confidence            45678899999993   332 23435667777663 34444445555556677776   78998843 1134443210  


Q ss_pred             ----------------c-----------chhHHHHHHHHHhhCCCCcEE--EEcCC-CHhhHHHHHHcCCCEEEEccccc
Q 031554           85 ----------------F-----------MPEMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        85 ----------------~-----------~~~~~~ki~~l~~~~~~~~I~--vdGGI-~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                                      +           ....++.|+++++.. ++++.  +.||| |++++..+.++|||.+++||+||
T Consensus       160 v~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~  238 (293)
T PRK04180        160 VRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIF  238 (293)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhh
Confidence                            0           112345566666653 57887  99999 99999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 031554          135 GAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       135 ~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +++||.+..++|.+.+..+.
T Consensus       239 ks~dP~~~akafv~ai~~~~  258 (293)
T PRK04180        239 KSGDPEKRARAIVEATTHYD  258 (293)
T ss_pred             cCCCHHHHHHHHHHHHHHcC
Confidence            99999999999999887643

>PRK00208 thiG thiazole synthase; Reviewed

Probab=99.10  E-value=4.7e-09  Score=82.32  Aligned_cols=136  Identities=19%  Similarity=0.224  Sum_probs=97.5

Q ss_pred             HHHHhC-CCCEEEEcccC-----CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554           10 EPLGKA-GASGFTFHVEI-----SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus        10 ~~~~~~-gad~v~vh~e~-----~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      +++.|. |-|||-+-.-.     .+++ .+++++++..   |+.+--.+  ..++...+.+.++  ++|.|.-++..-| 
T Consensus        83 ~lare~~~~~~iKlEVi~d~~~llpd~-~~tv~aa~~L~~~Gf~vlpyc--~~d~~~ak~l~~~--G~~~vmPlg~pIG-  156 (250)
T PRK00208         83 RLAREALGTNWIKLEVIGDDKTLLPDP-IETLKAAEILVKEGFVVLPYC--TDDPVLAKRLEEA--GCAAVMPLGAPIG-  156 (250)
T ss_pred             HHHHHHhCCCeEEEEEecCCCCCCcCH-HHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHc--CCCEeCCCCcCCC-
Confidence            344443 56887665322     2345 8899999998   88655444  3455556666653  7888844334446 


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +|+...  ..+.++.+++. .++++.+||||+ ++++.+..+.|||++++||+|++++||....+.|+..++..|
T Consensus       157 sg~gi~--~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr  228 (250)
T PRK00208        157 SGLGLL--NPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGR  228 (250)
T ss_pred             CCCCCC--CHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence            334431  13446666666 578999999999 899999999999999999999999999999999999887654

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=99.08  E-value=7.3e-10  Score=88.54  Aligned_cols=92  Identities=22%  Similarity=0.358  Sum_probs=68.8

Q ss_pred             HHHHHHHHHcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdG  109 (157)
                      ...++.+|+... ...+.++++|+.+..+.+.   .++|+|++..+.|         +.+++ ++.+++. ++++|++.|
T Consensus       168 ~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~---~gaD~I~ld~~~~---------e~l~~~v~~i~~~-~~i~i~asG  234 (269)
T cd01568         168 TEAVKRARAAAPFEKKIEVEVETLEEAEEALE---AGADIIMLDNMSP---------EELKEAVKLLKGL-PRVLLEASG  234 (269)
T ss_pred             HHHHHHHHHhCCCCCeEEEecCCHHHHHHHHH---cCCCEEEECCCCH---------HHHHHHHHHhccC-CCeEEEEEC
Confidence            677888888743 4455666678877777776   7899999864333         44444 3333443 678999999


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      |||++|+.++.++|||++++|+..+..
T Consensus       235 GIt~~ni~~~a~~Gad~Isvgal~~s~  261 (269)
T cd01568         235 GITLENIRAYAETGVDVISTGALTHSA  261 (269)
T ss_pred             CCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence            999999999999999999998766654

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=99.01  E-value=2.3e-08  Score=78.03  Aligned_cols=129  Identities=16%  Similarity=0.249  Sum_probs=89.0

Q ss_pred             HHHHHHhCCCCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEEecC--------CC--CHHh-HHhhHhcCCCCC
Q 031554            8 YVEPLGKAGASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVALKP--------GT--SVEE-VYPLVEGANPVE   69 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~l~~--------~t--~~~~-~~~~~~~~~~~d   69 (157)
                      .++.+.+.|||.+.+.......       .+.++.+.++++|+++.+....        .+  .++. .+...+  .++|
T Consensus        81 ~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~--~GaD  158 (235)
T cd00958          81 SVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAE--LGAD  158 (235)
T ss_pred             CHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHH--HCCC
Confidence            3788899999998666432221       2245556667789988775543        11  2222 222333  4899


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH-------hhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-------STIAEAASAGANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~-------~~i~~~~~~Gad~vV~GSai~~~~d~~~~  142 (157)
                      +|-+   .+  .+      .++.++++.+.. ++++.+-||++.       ++++++.++||+++.+||+||+++||.+.
T Consensus       159 ~Ik~---~~--~~------~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~  226 (235)
T cd00958         159 IVKT---KY--TG------DAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAM  226 (235)
T ss_pred             EEEe---cC--CC------CHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHH
Confidence            9966   11  11      345566666653 467888899854       67999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 031554          143 ISLMRKSV  150 (157)
Q Consensus       143 ~~~l~~~~  150 (157)
                      ++++++++
T Consensus       227 ~~~~~~~~  234 (235)
T cd00958         227 LRAISAVV  234 (235)
T ss_pred             HHHHHHHh
Confidence            99998764

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=99.01  E-value=2.5e-08  Score=75.40  Aligned_cols=134  Identities=21%  Similarity=0.278  Sum_probs=90.2

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      .+.++.+.++|+|+|.+-.-.-.  .++.++++++|+.+..+.-.+  .|-.+.....-   -++|+|-  +.--|+...
T Consensus        54 ~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADi--st~ee~~~A~~---~G~D~I~--TTLsGYT~~  126 (192)
T PF04131_consen   54 LKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKYQLVMADI--STLEEAINAAE---LGFDIIG--TTLSGYTPY  126 (192)
T ss_dssp             HHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE---SSHHHHHHHHH---TT-SEEE---TTTTSSTT
T ss_pred             HHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeec--CCHHHHHHHHH---cCCCEEE--cccccCCCC
Confidence            46788999999999999743221  345899999999993222235  44444444444   5899885  445576654


Q ss_pred             cc-chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554           84 KF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus        84 ~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      .. ....++.++++++.  +.++.+.|+|+ ++.+.++.++||+.+|+||+|.+   |....+++.+.++
T Consensus       127 t~~~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr---P~~It~~F~~ai~  191 (192)
T PF04131_consen  127 TKGDGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR---PQEITKRFVDAIK  191 (192)
T ss_dssp             STTSSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH----HHHHHHHHHHHCH
T ss_pred             CCCCCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC---HHHHHHHHHHHHh
Confidence            43 33467888888875  78899999998 89999999999999999999995   6666666666554

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.00  E-value=2.4e-08  Score=77.30  Aligned_cols=117  Identities=15%  Similarity=0.123  Sum_probs=86.4

Q ss_pred             CcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            2 VTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         2 v~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      |.++ ..++.+.++||++++.+.-.     .++++.++++++..--  ..-||-|..+.+-   .+.|.|-+   .|+  
T Consensus        74 Vl~~-~~a~~a~~aGA~FivsP~~~-----~~vi~~a~~~~i~~iP--G~~TptEi~~a~~---~Ga~~vKl---FPa--  137 (212)
T PRK05718         74 VLNP-EQLAQAIEAGAQFIVSPGLT-----PPLLKAAQEGPIPLIP--GVSTPSELMLGME---LGLRTFKF---FPA--  137 (212)
T ss_pred             ccCH-HHHHHHHHcCCCEEECCCCC-----HHHHHHHHHcCCCEeC--CCCCHHHHHHHHH---CCCCEEEE---ccc--
Confidence            3445 46789999999999998642     5889999998775332  3346666444444   68898866   463  


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                       +.+.  ..+.++.++.-+|++++.+.|||+.+|++++.++|+-.++.||.+|+.+
T Consensus       138 -~~~g--g~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L~~~~  190 (212)
T PRK05718        138 -EASG--GVKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIGGSWMVPKD  190 (212)
T ss_pred             -hhcc--CHHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEEChHhCCcc
Confidence             2111  3456788888889999999999999999999999976777778888643

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=98.97  E-value=5.3e-08  Score=74.32  Aligned_cols=135  Identities=21%  Similarity=0.311  Sum_probs=100.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc---hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD---NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~---~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      .+-++.++++|++.|.+-.-.-..   ++.++++++|..|....-.+  .|..|.+....   .++|+|-  |.--|+.+
T Consensus        88 lkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~--St~ee~l~a~~---~G~D~IG--TTLsGYT~  160 (229)
T COG3010          88 LKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADC--STFEEGLNAHK---LGFDIIG--TTLSGYTG  160 (229)
T ss_pred             HHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEecc--CCHHHHHHHHH---cCCcEEe--cccccccC
Confidence            456889999999999998543332   44677888777776555455  46666665555   6899884  45567766


Q ss_pred             ccc--chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           83 QKF--MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        83 q~~--~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      ..-  .+..++-++++.+  .++.+.+-|.++ ++.++...+.||+.+|+||||.+   |++-..|+.+.+++
T Consensus       161 ~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR---p~~It~~F~~~ik~  228 (229)
T COG3010         161 YTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR---PEEITQWFVDAIKS  228 (229)
T ss_pred             CCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC---HHHHHHHHHHHHhc
Confidence            322  2335677888877  579999999999 89999999999999999999995   67777777777654

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.94  E-value=5.7e-08  Score=75.96  Aligned_cols=125  Identities=18%  Similarity=0.186  Sum_probs=88.4

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEecC--------------C-CCHHhHHhhHhcCCCCCe
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVALKP--------------G-TSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l~~--------------~-t~~~~~~~~~~~~~~~d~   70 (157)
                      +.++.+.++|||.|++..+...++ ..+.+..+..|. ++-+++..              . ++++.++.+.+  .+++.
T Consensus        89 ~~~~~~~~~Ga~~v~iGs~~~~~~-~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~--~G~~~  165 (241)
T PRK13585         89 EDAASLLDLGVDRVILGTAAVENP-EIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEE--LGAGS  165 (241)
T ss_pred             HHHHHHHHcCCCEEEEChHHhhCh-HHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHH--cCCCE
Confidence            346778899999999998887776 555555555442 33333321              1 44555666554  48899


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCC
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPE  138 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d  138 (157)
                      +++..+.+....   ....++.++++++.. ++++.+.|||+ .+++..+..+||+.+++||++++.+.
T Consensus       166 i~~~~~~~~g~~---~g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~  230 (241)
T PRK13585        166 ILFTNVDVEGLL---EGVNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKF  230 (241)
T ss_pred             EEEEeecCCCCc---CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCc
Confidence            999877653111   223455677777764 68999999999 89999999999999999999997654

>cd04732 HisA HisA

Probab=98.93  E-value=6.7e-08  Score=75.08  Aligned_cols=123  Identities=15%  Similarity=0.155  Sum_probs=88.5

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEec---------------CCCCHHhHHhhHhcCCCCCeE
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVALK---------------PGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l~---------------~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      .++.+.+.|||.|.+......++ ..+-+..++.|. ++.+++.               +.++.+.++.+.+  .+++.+
T Consensus        87 ~~~~~~~~Gad~vvigs~~l~dp-~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ga~~i  163 (234)
T cd04732          87 DIERLLDLGVSRVIIGTAAVKNP-ELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEE--LGVKAI  163 (234)
T ss_pred             HHHHHHHcCCCEEEECchHHhCh-HHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHH--cCCCEE
Confidence            45677789999999998887777 555555666665 5555543               3344555666653  469999


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      +++.+......   ....++.++++++.. ++++.+.|||+ .+++..+.+.|||.+++||+++..+
T Consensus       164 ii~~~~~~g~~---~g~~~~~i~~i~~~~-~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~  226 (234)
T cd04732         164 IYTDISRDGTL---SGPNFELYKELAAAT-GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK  226 (234)
T ss_pred             EEEeecCCCcc---CCCCHHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence            99887653221   223356677777653 68999999999 6889999999999999999988654

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK08999 hypothetical protein; Provisional

Probab=98.93  E-value=1.3e-08  Score=82.55  Aligned_cols=117  Identities=19%  Similarity=0.183  Sum_probs=80.1

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP   87 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~   87 (157)
                      +++.+.+.|+|+||+..+....   ...+. ...+..+|++.  ++..+ +.+..+  .++||+.+-.+.|..+-....+
T Consensus       196 ~~~la~~~~~~GvHl~~~d~~~---~~~r~-~~~~~~ig~S~--h~~~~-~~~a~~--~~~dyi~~gpvf~t~tk~~~~~  266 (312)
T PRK08999        196 DPELAEDLGADGVHLTSAQLAA---LAARP-LPAGRWVAASC--HDAEE-LARAQR--LGVDFAVLSPVQPTASHPGAAP  266 (312)
T ss_pred             cHHHHHhcCCCEEEcChhhcCh---Hhhcc-CCCCCEEEEec--CCHHH-HHHHHh--cCCCEEEECCCcCCCCCCCCCC
Confidence            5678889999999999764332   11122 12345667766  44444 333322  4799999986655322111223


Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      -.++.++++++. .++++.+-|||+.+|++++.++|++++.+-|+|+
T Consensus       267 ~g~~~~~~~~~~-~~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~~  312 (312)
T PRK08999        267 LGWEGFAALIAG-VPLPVYALGGLGPGDLEEAREHGAQGIAGIRGLW  312 (312)
T ss_pred             CCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence            356777777765 3799999999999999999999999999999875

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=98.91  E-value=8.6e-08  Score=73.73  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=88.3

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +++ -++.+.++||+++.-+.-    . .+++++++++|+-.---  .-||-|....+-   .+.|.|=+   .|+..  
T Consensus        69 ~~~-~a~~a~~aGA~FivsP~~----~-~~v~~~~~~~~i~~iPG--~~TptEi~~A~~---~Ga~~vKl---FPA~~--  132 (204)
T TIGR01182        69 NPE-QLRQAVDAGAQFIVSPGL----T-PELAKHAQDHGIPIIPG--VATPSEIMLALE---LGITALKL---FPAEV--  132 (204)
T ss_pred             CHH-HHHHHHHcCCCEEECCCC----C-HHHHHHHHHcCCcEECC--CCCHHHHHHHHH---CCCCEEEE---CCchh--
Confidence            444 477889999999955532    2 58999999999865442  347777777776   78898855   47421  


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                       +  .....++.++.-+|+.++..-|||+.+|+.++.++|+..+.+||.+|+.+
T Consensus       133 -~--GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~~~  183 (204)
T TIGR01182       133 -S--GGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGGSWLVPKD  183 (204)
T ss_pred             -c--CCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcCch
Confidence             1  01346788888889999999999999999999999999999999999743

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.88  E-value=1.8e-08  Score=81.26  Aligned_cols=92  Identities=21%  Similarity=0.361  Sum_probs=69.5

Q ss_pred             HHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEE
Q 031554           32 QELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEV  107 (157)
Q Consensus        32 ~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~v  107 (157)
                      .+.++.+|+.   ..++++.+  +|..+..+.+-   .++|+|++-         +|.++.+++ ++.+++..+++++++
T Consensus       183 ~~av~~~r~~~~~~~~I~VEv--~tleea~eA~~---~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leA  248 (288)
T PRK07428        183 GEAITRIRQRIPYPLTIEVET--ETLEQVQEALE---YGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEA  248 (288)
T ss_pred             HHHHHHHHHhCCCCCEEEEEC--CCHHHHHHHHH---cCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEE
Confidence            6788888885   34555555  55555555554   789999874         455666666 444455567899999


Q ss_pred             EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      -||||.+|++++.++|+|.+++||.+.+++
T Consensus       249 sGGIt~~ni~~ya~tGvD~Isvgsl~~sa~  278 (288)
T PRK07428        249 SGNITLETIRAVAETGVDYISSSAPITRSP  278 (288)
T ss_pred             ECCCCHHHHHHHHHcCCCEEEEchhhhCCC
Confidence            999999999999999999999999988654

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=98.87  E-value=1.3e-07  Score=73.50  Aligned_cols=123  Identities=15%  Similarity=0.158  Sum_probs=90.6

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEec---------------CCCCHHhHHhhHhcCCCCCe
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALK---------------PGTSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~---------------~~t~~~~~~~~~~~~~~~d~   70 (157)
                      +-++.+.++|||.|.+..+...++ ..+.+.+++.| -++.+++.               +.++.+.++.+.+  .++|.
T Consensus        85 ed~~~~~~~Ga~~vvlgs~~l~d~-~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~--~g~~~  161 (230)
T TIGR00007        85 EDVEKLLDLGVDRVIIGTAAVENP-DLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEE--LGLEG  161 (230)
T ss_pred             HHHHHHHHcCCCEEEEChHHhhCH-HHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHh--CCCCE
Confidence            356788899999999998877777 77777788877 34554443               2344555666664  47899


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ++++.+......+.   ..++.++++++. .+.++.+.|||+ .+++..+.++|||.+++||+++..
T Consensus       162 ii~~~~~~~g~~~g---~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~  224 (230)
T TIGR00007       162 IIYTDISRDGTLSG---PNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG  224 (230)
T ss_pred             EEEEeecCCCCcCC---CCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence            99887765322222   246667777776 478999999999 699999999999999999998753

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=98.84  E-value=8e-08  Score=76.22  Aligned_cols=133  Identities=20%  Similarity=0.259  Sum_probs=90.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCC-c---ch---HHHHHHHHHHcCCceEEEec------CCCCHHhHH----hhHhcCCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEIS-K---DN---WQELVQRIKSKGMRPGVALK------PGTSVEEVY----PLVEGANPVE   69 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~-~---~~---~~~~i~~ir~~g~~~gl~l~------~~t~~~~~~----~~~~~~~~~d   69 (157)
                      ..++.+.+.|||.|-+..-.. .   +.   +.++.+.++++|+.+-+.+.      +..+.+.+.    ...+  .++|
T Consensus        94 ~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~--~GAD  171 (258)
T TIGR01949        94 TTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAE--LGAD  171 (258)
T ss_pred             eeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHH--HCCC
Confidence            457899999999888864311 1   11   13344445567877655322      122222222    2222  5899


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-------HhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAGANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-------~~~i~~~~~~Gad~vV~GSai~~~~d~~~~  142 (157)
                      ||-+-     +.+      .++.++++.+. ..++|.+.|||+       .++++++.++||+++.+||+||+++||.++
T Consensus       172 yikt~-----~~~------~~~~l~~~~~~-~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~  239 (258)
T TIGR01949       172 IVKTP-----YTG------DIDSFRDVVKG-CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGI  239 (258)
T ss_pred             EEecc-----CCC------CHHHHHHHHHh-CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHH
Confidence            99751     221      34455666554 258899999999       788999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 031554          143 ISLMRKSVEDA  153 (157)
Q Consensus       143 ~~~l~~~~~~~  153 (157)
                      ++.|++++.+.
T Consensus       240 ~~~l~~~i~~~  250 (258)
T TIGR01949       240 TKAVCKIVHEN  250 (258)
T ss_pred             HHHHHHHHhCC
Confidence            99999988753

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=98.81  E-value=1.2e-07  Score=74.06  Aligned_cols=136  Identities=22%  Similarity=0.343  Sum_probs=88.2

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +|+..++.+.+.|.|.+.+..-....+++++++.+++.--.+ +.+-|.++...    .   +..|.+++|++--|.. .
T Consensus        20 ~~~~~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~~~~lP-vilfPg~~~~v----s---~~aDail~~svlNs~n-~   90 (230)
T PF01884_consen   20 NPEEALEAACESGTDAIIVGGSDTGVTLDNVVALIKRVTDLP-VILFPGSPSQV----S---PGADAILFPSVLNSRN-P   90 (230)
T ss_dssp             -HHHHHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHHHSSS--EEEETSTCCG---------TTSSEEEEEEETTBSS-T
T ss_pred             CcHHHHHHHHhcCCCEEEECCCCCccchHHHHHHHHhcCCCC-EEEeCCChhhc----C---cCCCEEEEEEEecCCC-c
Confidence            567778888999999999997662223388888898873333 34445555432    2   5778888887753321 0


Q ss_pred             ccc-----------------------------------------h----h---------------------------HH-
Q 031554           84 KFM-----------------------------------------P----E---------------------------MM-   90 (157)
Q Consensus        84 ~~~-----------------------------------------~----~---------------------------~~-   90 (157)
                      .|.                                         +    +                           .. 
T Consensus        91 ~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~  170 (230)
T PF01884_consen   91 YWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVP  170 (230)
T ss_dssp             TTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HH
T ss_pred             chHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCcc
Confidence            110                                         0    0                           02 


Q ss_pred             HHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           91 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        91 ~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      ..+.++++...+.++.+.|||+ .+++.++.++|||.+|+|.++.+..+.++.++.+++
T Consensus       171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~i~a  229 (230)
T PF01884_consen  171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALETIKA  229 (230)
T ss_dssp             HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTHHHH
T ss_pred             HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHHHhh
Confidence            4455555555688999999999 799999999999999999999976665666665543

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=98.81  E-value=2.8e-07  Score=72.22  Aligned_cols=58  Identities=22%  Similarity=0.440  Sum_probs=45.5

Q ss_pred             HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           90 MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        90 ~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      .+.++++++.....++.+.|||+ .++++++..+|||.+|+||++.+  |+.+.++++++.
T Consensus       172 ~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~  230 (232)
T PRK04169        172 PEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKA  230 (232)
T ss_pred             HHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhh
Confidence            45667777764333899999999 68999999999999999999995  566666666554

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=98.81  E-value=1.7e-07  Score=75.20  Aligned_cols=114  Identities=15%  Similarity=0.247  Sum_probs=83.5

Q ss_pred             HHHHHHhCCCCEEEEcccCCc--------------chHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554            8 YVEPLGKAGASGFTFHVEISK--------------DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~--------------~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      +-..+..+|....|...-+..              +.+.+.++.+|++  +.++.+.+  . +++.+.+.++  .++|.|
T Consensus       138 l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv--~-tleea~ea~~--~GaDiI  212 (277)
T TIGR01334       138 LAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEA--D-TIEQALTVLQ--ASPDIL  212 (277)
T ss_pred             HHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEEC--C-CHHHHHHHHH--cCcCEE
Confidence            345567788888887743332              1347889999987  45555555  3 6677777775  589999


Q ss_pred             EEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554           72 LVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      ++-         .|.++.+.+ ++.+++..+++.+++-||||++|++++.+.|+|++++|+-.+.
T Consensus       213 ~lD---------n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~~a  268 (277)
T TIGR01334       213 QLD---------KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAPYYA  268 (277)
T ss_pred             EEC---------CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcceec
Confidence            985         244454444 5556656678999999999999999999999999999986543

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.77  E-value=3.9e-07  Score=69.92  Aligned_cols=115  Identities=17%  Similarity=0.036  Sum_probs=87.5

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      .+++ .++.+.++||+++.-+.-   +  .+++++++++|+-.---+  -||-|....+-   .+.|.|=+   .|+...
T Consensus        64 l~~e-~a~~ai~aGA~FivSP~~---~--~~vi~~a~~~~i~~iPG~--~TptEi~~A~~---~Ga~~vK~---FPa~~~  129 (201)
T PRK06015         64 LNAK-QFEDAAKAGSRFIVSPGT---T--QELLAAANDSDVPLLPGA--ATPSEVMALRE---EGYTVLKF---FPAEQA  129 (201)
T ss_pred             cCHH-HHHHHHHcCCCEEECCCC---C--HHHHHHHHHcCCCEeCCC--CCHHHHHHHHH---CCCCEEEE---CCchhh
Confidence            3444 568889999999887743   2  689999999998654433  46777667676   78888855   474110


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                           ...+.++.++.-+|+.++...|||+.+|+.++.++|+...+.||.++..
T Consensus       130 -----GG~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~l~~~  178 (201)
T PRK06015        130 -----GGAAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAPK  178 (201)
T ss_pred             -----CCHHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCeEEEEchhhCCc
Confidence                 0134678888888999999999999999999999999999999999964

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=98.76  E-value=1.4e-07  Score=72.20  Aligned_cols=112  Identities=24%  Similarity=0.266  Sum_probs=84.3

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP   87 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~   87 (157)
                      .++.+.++||+++.-+.-   +  .+++++++++|+-+.--+  -||-|....+-   .+.|.|=+   .|...   +  
T Consensus        72 ~a~~a~~aGA~FivSP~~---~--~~v~~~~~~~~i~~iPG~--~TptEi~~A~~---~G~~~vK~---FPA~~---~--  133 (196)
T PF01081_consen   72 QAEAAIAAGAQFIVSPGF---D--PEVIEYAREYGIPYIPGV--MTPTEIMQALE---AGADIVKL---FPAGA---L--  133 (196)
T ss_dssp             HHHHHHHHT-SEEEESS-------HHHHHHHHHHTSEEEEEE--SSHHHHHHHHH---TT-SEEEE---TTTTT---T--
T ss_pred             HHHHHHHcCCCEEECCCC---C--HHHHHHHHHcCCcccCCc--CCHHHHHHHHH---CCCCEEEE---ecchh---c--
Confidence            678889999999988753   2  699999999998766655  36666666666   68888855   47521   1  


Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      ...+.++.++.-+|++++...|||+.+|+.++.++|+..+++||.+|+.+
T Consensus       134 GG~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~L~~~~  183 (196)
T PF01081_consen  134 GGPSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAGAVAVGGGSWLFPKD  183 (196)
T ss_dssp             THHHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred             CcHHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCCCEEEEECchhcCHH
Confidence            12556788888889999999999999999999999999999999999743

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=98.75  E-value=3.6e-07  Score=71.13  Aligned_cols=47  Identities=26%  Similarity=0.343  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           90 MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        90 ~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      .+.++++++...+.++.+.|||+ .++++++.++|||.+|+||.+++.
T Consensus       167 ~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d  214 (223)
T TIGR01768       167 PELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED  214 (223)
T ss_pred             HHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence            45577777765579999999999 799999999999999999999964

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=98.74  E-value=3.5e-07  Score=72.60  Aligned_cols=132  Identities=18%  Similarity=0.338  Sum_probs=92.9

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcch-HHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDN-WQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~-~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      +|. .+.+...+|||.|.+.....+.. +.++++.++..|+.+-+.++....+   +..++  .+.+.|.+=..+..   
T Consensus       120 d~~-QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El---~~al~--~~a~iiGINnRdL~---  190 (254)
T PF00218_consen  120 DPY-QIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEEL---ERALE--AGADIIGINNRDLK---  190 (254)
T ss_dssp             SHH-HHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHH---HHHHH--TT-SEEEEESBCTT---
T ss_pred             CHH-HHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHH---HHHHH--cCCCEEEEeCcccc---
Confidence            344 56677899999999998777653 2689999999999999999533333   33332  46777755333322   


Q ss_pred             cccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554           83 QKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM  146 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l  146 (157)
                       .|. -.+++-.++....| ++.+...+||+ ++++..+..+|+|+|.+|+++.+++||.+++++|
T Consensus       191 -tf~-vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L  254 (254)
T PF00218_consen  191 -TFE-VDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDPGEALREL  254 (254)
T ss_dssp             -TCC-BHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred             -Ccc-cChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence             221 23445556666554 57788999999 7999999999999999999999999999998875

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.74  E-value=5.1e-07  Score=72.40  Aligned_cols=135  Identities=19%  Similarity=0.300  Sum_probs=93.1

Q ss_pred             ChHHH---HHHHHhCCCCEEEEcccCCc-----------chHHHHHHHHHHc-CCceEEEecCCCCHHh----HHhhHhc
Q 031554            4 NPLDY---VEPLGKAGASGFTFHVEISK-----------DNWQELVQRIKSK-GMRPGVALKPGTSVEE----VYPLVEG   64 (157)
Q Consensus         4 ~p~~~---i~~~~~~gad~v~vh~e~~~-----------~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~----~~~~~~~   64 (157)
                      +|+.|   ++.+.+.|+|.|-++.-.+.           +.+.++++++|+. ++-+.+=+.+..+.+.    ++.+.+ 
T Consensus       109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~-  187 (289)
T cd02810         109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAER-  187 (289)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHH-
Confidence            45444   56667789999999854321           1236788888886 5666666777666333    333332 


Q ss_pred             CCCCCeEEEEeeeCC------------------CCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCC
Q 031554           65 ANPVEMVLVMTVEPG------------------FGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGA  124 (157)
Q Consensus        65 ~~~~d~vl~m~v~pG------------------~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Ga  124 (157)
                       .++|+|.+....++                  ..|....+..++.++++++..+ +++|.+.|||+ .+++.++..+||
T Consensus       188 -~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GA  266 (289)
T cd02810         188 -AGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGA  266 (289)
T ss_pred             -cCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCc
Confidence             47899987533221                  1122223346778889988765 79999999998 799999999999


Q ss_pred             CEEEEcccccCC-CCHH
Q 031554          125 NCIVAGSSVFGA-PEPA  140 (157)
Q Consensus       125 d~vV~GSai~~~-~d~~  140 (157)
                      |.+-+||+++.. ++.-
T Consensus       267 d~V~vg~a~~~~GP~~~  283 (289)
T cd02810         267 SAVQVATALMWDGPDVI  283 (289)
T ss_pred             cHheEcHHHHhcCccHH
Confidence            999999999875 5543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=98.74  E-value=6.3e-07  Score=72.95  Aligned_cols=117  Identities=18%  Similarity=0.231  Sum_probs=88.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-Ccc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQK   84 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq~   84 (157)
                      ...++.+.+.|++.|.++.-   .+ .++++++|++|+++...+   ++++..+...+  .++|.|.+.+.+.|.. ++ 
T Consensus        77 ~~~~~~~~~~~v~~v~~~~g---~p-~~~i~~lk~~g~~v~~~v---~s~~~a~~a~~--~GaD~Ivv~g~eagGh~g~-  146 (307)
T TIGR03151        77 DELVDLVIEEKVPVVTTGAG---NP-GKYIPRLKENGVKVIPVV---ASVALAKRMEK--AGADAVIAEGMESGGHIGE-  146 (307)
T ss_pred             HHHHHHHHhCCCCEEEEcCC---Cc-HHHHHHHHHcCCEEEEEc---CCHHHHHHHHH--cCCCEEEEECcccCCCCCC-
Confidence            45778889999999999754   45 679999999998765444   45555555554  5899999987766422 22 


Q ss_pred             cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           85 FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                        ...+.-++++++.. +++|.+.|||. .+.+..+...|||++.+||.+..
T Consensus       147 --~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~  195 (307)
T TIGR03151       147 --LTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC  195 (307)
T ss_pred             --CcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence              23566777777664 68999999998 57799988999999999998654

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=98.73  E-value=4.6e-07  Score=72.28  Aligned_cols=132  Identities=22%  Similarity=0.318  Sum_probs=86.5

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc----c---hHHHHHHHHHHcCCceEEE-------ecCCCCHHhH----HhhHhcCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISK----D---NWQELVQRIKSKGMRPGVA-------LKPGTSVEEV----YPLVEGANPV   68 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~----~---~~~~~i~~ir~~g~~~gl~-------l~~~t~~~~~----~~~~~~~~~~   68 (157)
                      ..++.+.+.|||.+-+......    +   .+.++.+.++++|+.+-+.       +......+.+    +...+  .++
T Consensus        97 ~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e--~GA  174 (267)
T PRK07226         97 GTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAE--LGA  174 (267)
T ss_pred             ecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHH--HCC
Confidence            3478899999998887733211    1   1134445556678766553       2111121221    11222  488


Q ss_pred             CeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhh-------HHHHHHcCCCEEEEcccccCCCCHHH
Q 031554           69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST-------IAEAASAGANCIVAGSSVFGAPEPAH  141 (157)
Q Consensus        69 d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~-------i~~~~~~Gad~vV~GSai~~~~d~~~  141 (157)
                      |+|=     +.+.+      ..+.++++.+. ..++|.+.|||+.+|       +.++.++||+++.+|++||+.+||.+
T Consensus       175 D~vK-----t~~~~------~~~~l~~~~~~-~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~  242 (267)
T PRK07226        175 DIVK-----TNYTG------DPESFREVVEG-CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEA  242 (267)
T ss_pred             CEEe-----eCCCC------CHHHHHHHHHh-CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHH
Confidence            9993     22332      13444555443 258899999999775       67778999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 031554          142 VISLMRKSVED  152 (157)
Q Consensus       142 ~~~~l~~~~~~  152 (157)
                      .++.|+.++.+
T Consensus       243 ~~~~l~~~v~~  253 (267)
T PRK07226        243 ITRAISAVVHE  253 (267)
T ss_pred             HHHHHHHHHhC
Confidence            99999998764

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.71  E-value=9e-07  Score=68.93  Aligned_cols=113  Identities=18%  Similarity=0.192  Sum_probs=86.7

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +++ .++.+.++||+++.-+.-   +  .+++++++++|+-..--+  -||-|....+-   .+.|.|=+   .|+..+ 
T Consensus        80 ~~e-~a~~a~~aGA~FiVsP~~---~--~~v~~~~~~~~i~~iPG~--~TpsEi~~A~~---~Ga~~vKl---FPA~~~-  144 (222)
T PRK07114         80 DAA-TAALYIQLGANFIVTPLF---N--PDIAKVCNRRKVPYSPGC--GSLSEIGYAEE---LGCEIVKL---FPGSVY-  144 (222)
T ss_pred             CHH-HHHHHHHcCCCEEECCCC---C--HHHHHHHHHcCCCEeCCC--CCHHHHHHHHH---CCCCEEEE---Cccccc-
Confidence            444 457889999999877643   2  589999999987654433  36666666666   78888855   474211 


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCH--hhHHHHHHcCCCEEEEcccccCC
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~--~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                           ....++.++.-+|+.++...|||+.  +|+.++.++|+..+.+||.+|..
T Consensus       145 -----G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~  194 (222)
T PRK07114        145 -----GPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPK  194 (222)
T ss_pred             -----CHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCc
Confidence                 2456788888889999999999998  89999999999999999999853

>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

Probab=98.70  E-value=4.3e-08  Score=75.91  Aligned_cols=124  Identities=23%  Similarity=0.257  Sum_probs=79.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCce-EEEecCCCCHHhHHh------------hHhc--CCCCCeE
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRP-GVALKPGTSVEEVYP------------LVEG--ANPVEMV   71 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~-gl~l~~~t~~~~~~~------------~~~~--~~~~d~v   71 (157)
                      .+++.+.+.|+|++|+|.-+....+..+++..++++..+ +++...+.+.+.+++            +.+.  ...++.+
T Consensus        67 ~~~~~~~~~gad~~Tvh~~~G~~~l~~~~~~~~~~~~~~~~v~~lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~  146 (216)
T cd04725          67 AAAEALLGLGADAVTVHPYGGSDMLKAALEAAEEKGKGLFAVTVLSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGV  146 (216)
T ss_pred             HHHHHHHhcCCCEEEECCcCCHHHHHHHHHHHhccCCeEEEEEcCCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEE
Confidence            455668889999999999887777778888887765443 444322323332222            1110  0122222


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh----------hHHHHHHcCCCEEEEcccccCCCCHHH
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS----------TIAEAASAGANCIVAGSSVFGAPEPAH  141 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~----------~i~~~~~~Gad~vV~GSai~~~~d~~~  141 (157)
                      ..    ++        ...+.++  +...+++. .+-+||+++          +..++.+.|++++++|++|++++||.+
T Consensus       147 V~----~~--------~~~~~i~--~~~~~~~~-~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~  211 (216)
T cd04725         147 VC----GA--------TEPEALR--RALGPDFL-ILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVA  211 (216)
T ss_pred             EE----CC--------cchHHHH--HhhCCCCe-EEcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHH
Confidence            21    11        1122222  22335665 688999998          899999999999999999999999998


Q ss_pred             HHHH
Q 031554          142 VISL  145 (157)
Q Consensus       142 ~~~~  145 (157)
                      +++.
T Consensus       212 ~~~~  215 (216)
T cd04725         212 AAEA  215 (216)
T ss_pred             HHhc
Confidence            8765

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.70  E-value=2.1e-07  Score=74.68  Aligned_cols=89  Identities=13%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             HHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE
Q 031554           32 QELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd  108 (157)
                      .+.++.+|+.   +.++|+.++  |..+..+...   .++|||++-         .+.++.++++.++.  .+.+++++-
T Consensus       175 ~~~v~~aR~~~~~~~~Igvsv~--tleea~~A~~---~gaDyI~lD---------~~~~e~l~~~~~~~--~~~i~i~Ai  238 (277)
T PRK08072        175 TKAVTSVREKLGHMVKIEVETE--TEEQVREAVA---AGADIIMFD---------NRTPDEIREFVKLV--PSAIVTEAS  238 (277)
T ss_pred             HHHHHHHHHhCCCCCEEEEEeC--CHHHHHHHHH---cCCCEEEEC---------CCCHHHHHHHHHhc--CCCceEEEE
Confidence            6777788876   356777774  5444444444   689999871         24445554444322  245789999


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ||||.+|++++.++|+|++++|+-.+++
T Consensus       239 GGIt~~ni~~~a~~Gvd~IAvg~l~~sa  266 (277)
T PRK08072        239 GGITLENLPAYGGTGVDYISLGFLTHSV  266 (277)
T ss_pred             CCCCHHHHHHHHHcCCCEEEEChhhcCC
Confidence            9999999999999999999999966644

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=98.69  E-value=2.6e-06  Score=68.58  Aligned_cols=141  Identities=21%  Similarity=0.331  Sum_probs=92.9

Q ss_pred             HHHHHHhCCCCEEEEcccCCc------------chHHHHHHHHHHc-CCceEEEecCCCC-H-HhHHhhHhcCCCCCeEE
Q 031554            8 YVEPLGKAGASGFTFHVEISK------------DNWQELVQRIKSK-GMRPGVALKPGTS-V-EEVYPLVEGANPVEMVL   72 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~------------~~~~~~i~~ir~~-g~~~gl~l~~~t~-~-~~~~~~~~~~~~~d~vl   72 (157)
                      ..+.+.++|+|+|-+|.-++.            +.+.++++.+|+. ++-+.+=++|+.+ . +.++.+.+  .++|.|.
T Consensus       107 ~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~--~G~d~i~  184 (296)
T cd04740         107 VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEE--AGADGLT  184 (296)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHH--cCCCEEE
Confidence            334556789999999853221            1225788999987 7777766776643 2 22333332  4789886


Q ss_pred             EEeee-----------C-------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccc
Q 031554           73 VMTVE-----------P-------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        73 ~m~v~-----------p-------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai  133 (157)
                      +..+.           |       |+.|....+..++.++++++.. +++|...|||+ .+++.++..+|||.+-+||++
T Consensus       185 ~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~  263 (296)
T cd04740         185 LINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTAN  263 (296)
T ss_pred             EECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhh
Confidence            64221           1       2334444455677888888764 79999999995 899999999999999999998


Q ss_pred             cCCCCH-HHHHHHHHHHHH
Q 031554          134 FGAPEP-AHVISLMRKSVE  151 (157)
Q Consensus       134 ~~~~d~-~~~~~~l~~~~~  151 (157)
                      +..++. .+..+.+.+.++
T Consensus       264 l~~p~~~~~i~~~l~~~~~  282 (296)
T cd04740         264 FVDPEAFKEIIEGLEAYLD  282 (296)
T ss_pred             hcChHHHHHHHHHHHHHHH
Confidence            864443 233344444333

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=98.69  E-value=8.4e-08  Score=71.81  Aligned_cols=94  Identities=27%  Similarity=0.449  Sum_probs=67.2

Q ss_pred             HHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdG  109 (157)
                      .+.++.+|++. ...-+.+..++ ++.+++.++  .++|.|++-..         .++.+++ +++++...+.+.|++-|
T Consensus        67 ~~av~~~~~~~~~~~~I~VEv~~-~ee~~ea~~--~g~d~I~lD~~---------~~~~~~~~v~~l~~~~~~v~ie~SG  134 (169)
T PF01729_consen   67 EEAVKAARQAAPEKKKIEVEVEN-LEEAEEALE--AGADIIMLDNM---------SPEDLKEAVEELRELNPRVKIEASG  134 (169)
T ss_dssp             HHHHHHHHHHSTTTSEEEEEESS-HHHHHHHHH--TT-SEEEEES----------CHHHHHHHHHHHHHHTTTSEEEEES
T ss_pred             HHHHHHHHHhCCCCceEEEEcCC-HHHHHHHHH--hCCCEEEecCc---------CHHHHHHHHHHHhhcCCcEEEEEEC
Confidence            78888888862 22225555455 555555554  68999998643         3345554 55666677889999999


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      |||++|++++.+.|+|.+++||...+++
T Consensus       135 GI~~~ni~~ya~~gvD~isvg~~~~~a~  162 (169)
T PF01729_consen  135 GITLENIAEYAKTGVDVISVGSLTHSAP  162 (169)
T ss_dssp             SSSTTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred             CCCHHHHHHHHhcCCCEEEcChhhcCCc
Confidence            9999999999999999999999877653

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.68  E-value=2e-06  Score=67.39  Aligned_cols=132  Identities=17%  Similarity=0.199  Sum_probs=87.9

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEec--------------------CCCCHHhHHhhHhcCC
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVALK--------------------PGTSVEEVYPLVEGAN   66 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l~--------------------~~t~~~~~~~~~~~~~   66 (157)
                      -++.+.+.|+|.|.+......++ ..+.+..++.+. ++.+++.                    ..+..+.++.+.+  .
T Consensus        85 d~~~~l~~G~~~v~ig~~~~~~p-~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~--~  161 (243)
T cd04731          85 DARRLLRAGADKVSINSAAVENP-ELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE--L  161 (243)
T ss_pred             HHHHHHHcCCceEEECchhhhCh-HHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH--C
Confidence            44566678999999998777777 555555566553 3555543                    1122334444443  5


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEcccccCCC-CHHHHH
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSVFGAP-EPAHVI  143 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~GSai~~~~-d~~~~~  143 (157)
                      ++|.+++.++.+....+.+   .++-++++++. .++++.+-|||+ ++++..+.+. |+|.+++||+++... +..+..
T Consensus       162 G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~~-~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~  237 (243)
T cd04731         162 GAGEILLTSMDRDGTKKGY---DLELIRAVSSA-VNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELK  237 (243)
T ss_pred             CCCEEEEeccCCCCCCCCC---CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHH
Confidence            8999999877653333333   35556666655 378999999997 7999998886 999999999988543 444433


Q ss_pred             HHH
Q 031554          144 SLM  146 (157)
Q Consensus       144 ~~l  146 (157)
                      +.+
T Consensus       238 ~~~  240 (243)
T cd04731         238 EYL  240 (243)
T ss_pred             HHH
Confidence            433

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP

Probab=98.67  E-value=1.5e-07  Score=73.16  Aligned_cols=123  Identities=24%  Similarity=0.285  Sum_probs=83.1

Q ss_pred             HHHhCCCCEEEEcccCCcchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhh------------HhcC--CCCCeEEEE
Q 031554           11 PLGKAGASGFTFHVEISKDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPL------------VEGA--NPVEMVLVM   74 (157)
Q Consensus        11 ~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~------------~~~~--~~~d~vl~m   74 (157)
                      .+.+.|||++|+|.-+..+++..+++..+++|  ..+++.+..+...+.++.+            .+..  ..++.+.  
T Consensus        80 ~~~~~gaD~vTv~~~~G~~tl~~~~~~a~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~G~v--  157 (226)
T PF00215_consen   80 AAFELGADAVTVHPFAGDDTLEAAVKAAKKHGRKGVFVVDLLSNPDSEDLQDLGLGVDQEIVHRAADLAAKAGVDGIV--  157 (226)
T ss_dssp             HHHTTTESEEEEEGTTHHHHHHHHHHHHHHTTESEEEEEESTTSTTHHHHHHHHCTHHHHHHHHHHHHHHHTTEEEEE--
T ss_pred             hhhcCCCcEEEEeccCCHHHHHHHHHHHhccCCcceEEEEecCCCCHHHHHhhhcccHHHHHHHHHHhhccccccCcc--
Confidence            44799999999999988888899999999998  5566666545554444441            0000  0111111  


Q ss_pred             eeeCCCCCcccchhHHHHHHHH----HhhCCCC---cEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCCCCHHHHHHHH
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSL----RNRYPSL---DIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGAPEPAHVISLM  146 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l----~~~~~~~---~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~~d~~~~~~~l  146 (157)
                        -++     ..+    .+++.    ....|++   ...+.||++....+.+.. .|+|++|+||+|.+++||.++++++
T Consensus       158 --~~~-----~~~----~~~~~~~~~~~l~PGi~~~~~~~~~~~~~~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i  226 (226)
T PF00215_consen  158 --CSA-----TEP----AIRKAGPNFKILTPGIGAIQGAVAGGQKRATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI  226 (226)
T ss_dssp             --ETT-----TCH----HHHHHTTTSEEEEESBSSSTCEECSSHHCHHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred             --ccc-----ccc----cccccccchhhccCCCCcccccCcccccccccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence              111     111    33332    1123443   678999999988887765 8999999999999999999998764

In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=98.66  E-value=1.6e-06  Score=68.87  Aligned_cols=125  Identities=17%  Similarity=0.194  Sum_probs=83.7

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecC--------------------CCCHHhHHhhHhcCC
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKP--------------------GTSVEEVYPLVEGAN   66 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~--------------------~t~~~~~~~~~~~~~   66 (157)
                      -++.+.+.|++.+.+..+...++ .-+-+.+++++ -++.+++..                    .++.+.++.+.+  .
T Consensus        88 d~~~l~~~G~~~vvigs~~~~~~-~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~--~  164 (258)
T PRK01033         88 QAKKIFSLGVEKVSINTAALEDP-DLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEA--L  164 (258)
T ss_pred             HHHHHHHCCCCEEEEChHHhcCH-HHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHH--c
Confidence            35556688999999998777766 44444444444 234444431                    123444555543  4


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH-HcCCCEEEEcccc-cCCCCH
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-SAGANCIVAGSSV-FGAPEP  139 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~-~~Gad~vV~GSai-~~~~d~  139 (157)
                      .++.+++..+......+-+   .++.++++++. .++++.+-|||+ .+++.++. +.|+|++++|+++ |...++
T Consensus       165 g~~~ii~~~i~~~G~~~G~---d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~~~~  236 (258)
T PRK01033        165 GAGEILLNSIDRDGTMKGY---DLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKGVYK  236 (258)
T ss_pred             CCCEEEEEccCCCCCcCCC---CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCcccc
Confidence            7899999877653222222   56667777766 579999999999 69999987 8999999999996 553333

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.66  E-value=1.6e-06  Score=68.07  Aligned_cols=122  Identities=13%  Similarity=0.072  Sum_probs=87.4

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC------------C---CHHhHHhhHhcCCCCCeE
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG------------T---SVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~------------t---~~~~~~~~~~~~~~~d~v   71 (157)
                      .-++.+.++||+.|.+.-++..++ +-+-+...+.|-++.+++...            +   +.+.++++.+  ..+..+
T Consensus        89 e~v~~~l~~Ga~kvvigt~a~~~~-~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~--~g~~~i  165 (234)
T PRK13587         89 SQIMDYFAAGINYCIVGTKGIQDT-DWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSD--IPLGGI  165 (234)
T ss_pred             HHHHHHHHCCCCEEEECchHhcCH-HHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHH--cCCCEE
Confidence            457788899999999999988887 444444555666666665321            1   2455555553  357889


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      +++.+......+-..   ++-++++++. .+.++.+-||++ .+.+..+.+.|++.+++||++++
T Consensus       166 i~tdi~~dGt~~G~~---~~li~~l~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~  226 (234)
T PRK13587        166 IYTDIAKDGKMSGPN---FELTGQLVKA-TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ  226 (234)
T ss_pred             EEecccCcCCCCccC---HHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence            999887643434333   3344555554 478999999999 69999999999999999999986

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=98.65  E-value=1.1e-06  Score=68.22  Aligned_cols=123  Identities=15%  Similarity=0.183  Sum_probs=84.7

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC---------------CCCHHhHHhhHhcCCCCCeE
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP---------------GTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~---------------~t~~~~~~~~~~~~~~~d~v   71 (157)
                      .-++.+.+.|||.|.+......++ ..+.+.++..+-++.+++..               .++.+.++.+.+  .+++.+
T Consensus        87 ed~~~~~~~Ga~~vilg~~~l~~~-~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~--~g~~~i  163 (233)
T PRK00748         87 ETVEALLDAGVSRVIIGTAAVKNP-ELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFED--AGVKAI  163 (233)
T ss_pred             HHHHHHHHcCCCEEEECchHHhCH-HHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHh--cCCCEE
Confidence            356778889999999998777766 44444444444444444432               123455555552  368999


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcccccCC
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVFGA  136 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai~~~  136 (157)
                      +++.+......+.   ..++.++++++.. ++++.+-|||+ .+++.++.+.| ||++++||+++..
T Consensus       164 i~~~~~~~g~~~G---~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~  226 (233)
T PRK00748        164 IYTDISRDGTLSG---PNVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG  226 (233)
T ss_pred             EEeeecCcCCcCC---CCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence            9988876322222   2456677777664 58999999999 69999999988 9999999998753

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=98.64  E-value=2.8e-07  Score=73.69  Aligned_cols=89  Identities=22%  Similarity=0.380  Sum_probs=62.9

Q ss_pred             HHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEE
Q 031554           32 QELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEV  107 (157)
Q Consensus        32 ~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~v  107 (157)
                      ...++.+|+.   +.++|+.++  |. +.+.+..+  .++|||++-   |      |.++   .++++.+... ++++++
T Consensus       169 ~~~v~~~r~~~~~~~~Igvev~--s~-eea~~A~~--~gaDyI~ld---~------~~~e---~l~~~~~~~~~~ipi~A  231 (268)
T cd01572         169 TEAVRRARAAAPFTLKIEVEVE--TL-EQLKEALE--AGADIIMLD---N------MSPE---ELREAVALLKGRVLLEA  231 (268)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEC--CH-HHHHHHHH--cCCCEEEEC---C------cCHH---HHHHHHHHcCCCCcEEE
Confidence            4556677775   466788874  44 44444443  689999883   2      2233   4444444432 689999


Q ss_pred             EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      -||||++|++++.++|+|++++||..++++
T Consensus       232 iGGI~~~ni~~~a~~Gvd~Iav~sl~~~a~  261 (268)
T cd01572         232 SGGITLENIRAYAETGVDYISVGALTHSAP  261 (268)
T ss_pred             ECCCCHHHHHHHHHcCCCEEEEEeeecCCC
Confidence            999999999999999999999999777543

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=98.63  E-value=1.8e-06  Score=69.54  Aligned_cols=136  Identities=15%  Similarity=0.196  Sum_probs=97.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc-----hHHHHHHHHHHcCCceEEE---ec-----------CCCCHHhHHhhHhcCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD-----NWQELVQRIKSKGMRPGVA---LK-----------PGTSVEEVYPLVEGAN   66 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~-----~~~~~i~~ir~~g~~~gl~---l~-----------~~t~~~~~~~~~~~~~   66 (157)
                      ..+++.+.+.|+++|-+=.-..+.     ...++.+.++++|..+...   +.           ..|..+.+.++.+. .
T Consensus        87 ~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~-t  165 (281)
T PRK06806         87 FEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEE-T  165 (281)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHh-h
Confidence            457888999999888876322221     1155667788888766443   22           02455666666532 4


Q ss_pred             CCCeEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554           67 PVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus        67 ~~d~vl~--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG--GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~  142 (157)
                      ++|++.+  .++++.+.+  ..+-.+++++++++.. +++++.-|  ||+.++++++.++|++.+-++|+++.  ++.++
T Consensus       166 g~DyLAvaiG~~hg~~~~--~~~l~~~~L~~i~~~~-~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~--a~~~a  240 (281)
T PRK06806        166 DVDALAVAIGNAHGMYNG--DPNLRFDRLQEINDVV-HIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFN--SVITA  240 (281)
T ss_pred             CCCEEEEccCCCCCCCCC--CCccCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHH--HHHHH
Confidence            8999999  878865422  2334677888888874 79999999  99999999999999999999999996  56666


Q ss_pred             HHHHH
Q 031554          143 ISLMR  147 (157)
Q Consensus       143 ~~~l~  147 (157)
                      ++++.
T Consensus       241 ~~~~~  245 (281)
T PRK06806        241 VNNLV  245 (281)
T ss_pred             HHHHH
Confidence            66554

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=98.63  E-value=1.5e-06  Score=67.21  Aligned_cols=132  Identities=15%  Similarity=0.216  Sum_probs=84.4

Q ss_pred             cChHHHHH---HHHhCCCCEEEEcccCC----------------cchHHHHHHHHHHc-CCceEEEecC--CCC---HHh
Q 031554            3 TNPLDYVE---PLGKAGASGFTFHVEIS----------------KDNWQELVQRIKSK-GMRPGVALKP--GTS---VEE   57 (157)
Q Consensus         3 ~~p~~~i~---~~~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~-g~~~gl~l~~--~t~---~~~   57 (157)
                      .+|+.|.+   .+.++|+|.|-+|.-.+                .+.+.++++.+|+. +..+.+-++.  ...   .+.
T Consensus        64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~  143 (231)
T cd02801          64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLEL  143 (231)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHH
Confidence            35665554   45677999999995431                12236788888875 3344443432  222   222


Q ss_pred             HHhhHhcCCCCCeEEEEeeeCCCCCc-ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEccccc
Q 031554           58 VYPLVEGANPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSVF  134 (157)
Q Consensus        58 ~~~~~~~~~~~d~vl~m~v~pG~~gq-~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~GSai~  134 (157)
                      ++.+.+  .++|++.+.+.   ...| ...+..++.++++++. .+++|.++|||+ .+++.++.+. |||.+.+|++++
T Consensus       144 ~~~l~~--~Gvd~i~v~~~---~~~~~~~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l  217 (231)
T cd02801         144 AKALED--AGASALTVHGR---TREQRYSGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGAL  217 (231)
T ss_pred             HHHHHH--hCCCEEEECCC---CHHHcCCCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhH
Confidence            333332  46888866433   2222 1223456667777765 579999999995 8999999887 899999999999


Q ss_pred             CCCCHH
Q 031554          135 GAPEPA  140 (157)
Q Consensus       135 ~~~d~~  140 (157)
                      ..++.-
T Consensus       218 ~~P~~~  223 (231)
T cd02801         218 GNPWLF  223 (231)
T ss_pred             hCCHHH
Confidence            766543

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.62  E-value=2.1e-06  Score=72.17  Aligned_cols=125  Identities=22%  Similarity=0.271  Sum_probs=82.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC--CC
Q 031554            7 DYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--GG   82 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~--~g   82 (157)
                      +.++.+.++|+|.|.+-.-.. ...+.+.++++|+.--..-+.. +..|.- ..+.+++  .++|.|.+ +.-||.  .+
T Consensus       156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e-~a~~l~~--aGaD~I~v-G~g~Gs~c~t  231 (404)
T PRK06843        156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKE-AALDLIS--VGADCLKV-GIGPGSICTT  231 (404)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHH-HHHHHHH--cCCCEEEE-CCCCCcCCcc
Confidence            688999999999999754332 1233678888887521222323 444544 4444443  58999986 666763  11


Q ss_pred             ccc---c-h--hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           83 QKF---M-P--EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        83 q~~---~-~--~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      +..   . |  ..+..+.++.+. .+++|.+||||+ ...+.....+|||.+++||++.+.
T Consensus       232 r~~~g~g~p~ltai~~v~~~~~~-~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt  291 (404)
T PRK06843        232 RIVAGVGVPQITAICDVYEVCKN-TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT  291 (404)
T ss_pred             eeecCCCCChHHHHHHHHHHHhh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeee
Confidence            111   1 1  233344444433 368999999997 799999999999999999999863

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=98.62  E-value=5.9e-06  Score=64.77  Aligned_cols=136  Identities=19%  Similarity=0.231  Sum_probs=101.3

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC---------------CCHHhHHhhHhcCCCCC
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG---------------TSVEEVYPLVEGANPVE   69 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~---------------t~~~~~~~~~~~~~~~d   69 (157)
                      -.+.++.+.++|++.|.+.--+..+| ..+.+.++++|-++.++|...               ++.+.++++.+  .++.
T Consensus        86 s~~~v~~ll~~G~~rViiGt~av~~p-~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~--~g~~  162 (241)
T COG0106          86 SLEDVEALLDAGVARVIIGTAAVKNP-DLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEE--VGLA  162 (241)
T ss_pred             CHHHHHHHHHCCCCEEEEecceecCH-HHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHh--cCCC
Confidence            35678899999999999999999999 888889999998888877432               23455666664  3567


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEcccccCCC-CHHHHHHHH
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSVFGAP-EPAHVISLM  146 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~GSai~~~~-d~~~~~~~l  146 (157)
                      .+++--+.-  +|-..- ..++-++++.+.. ++++.+-|||+ .+.++.+.+. |+.++|+|+|++... ++.++++-+
T Consensus       163 ~ii~TdI~~--DGtl~G-~n~~l~~~l~~~~-~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~  238 (241)
T COG0106         163 HILYTDISR--DGTLSG-PNVDLVKELAEAV-DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACV  238 (241)
T ss_pred             eEEEEeccc--ccccCC-CCHHHHHHHHHHh-CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHH
Confidence            777654442  332211 2344566666665 88999999999 6999999999 899999999998643 677777665


Q ss_pred             H
Q 031554          147 R  147 (157)
Q Consensus       147 ~  147 (157)
                      +
T Consensus       239 ~  239 (241)
T COG0106         239 R  239 (241)
T ss_pred             h
Confidence            4

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.62  E-value=3.1e-07  Score=74.06  Aligned_cols=94  Identities=18%  Similarity=0.273  Sum_probs=67.3

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdGG  110 (157)
                      .+.++.+|++--..-+.+..+|-.+ +.+.++  .++|.|++-         .|.++.+++ ++.+++..+++.+++-||
T Consensus       187 ~~ai~~~r~~~~~~kIeVEv~tl~e-a~eal~--~gaDiI~LD---------nm~~e~vk~av~~~~~~~~~v~ieaSGG  254 (289)
T PRK07896        187 VAALRAVRAAAPDLPCEVEVDSLEQ-LDEVLA--EGAELVLLD---------NFPVWQTQEAVQRRDARAPTVLLESSGG  254 (289)
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCHHH-HHHHHH--cCCCEEEeC---------CCCHHHHHHHHHHHhccCCCEEEEEECC
Confidence            6788888875211224554455544 444444  689999884         355566655 444455667899999999


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      ||++|++++.+.|+|.+++|+...+++
T Consensus       255 I~~~ni~~yA~tGvD~Is~galt~sa~  281 (289)
T PRK07896        255 LTLDTAAAYAETGVDYLAVGALTHSVP  281 (289)
T ss_pred             CCHHHHHHHHhcCCCEEEeChhhcCCC
Confidence            999999999999999999999777543

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=98.61  E-value=4.2e-06  Score=66.26  Aligned_cols=133  Identities=17%  Similarity=0.187  Sum_probs=88.5

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEec----C-------------------CCCHHhHHhhHh
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALK----P-------------------GTSVEEVYPLVE   63 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~----~-------------------~t~~~~~~~~~~   63 (157)
                      -++.+.+.||+.|.+.-+...++ ..+-+..+..| -++.+++.    +                   .++.+.++.+.+
T Consensus        88 d~~~~~~~Ga~~vivgt~~~~~p-~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~  166 (254)
T TIGR00735        88 DVDKLLRAGADKVSINTAAVKNP-ELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEK  166 (254)
T ss_pred             HHHHHHHcCCCEEEEChhHhhCh-HHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHH
Confidence            45566778999999998887777 44444455556 45555553    1                   122344445543


Q ss_pred             cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcccccCCC-CHH
Q 031554           64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVFGAP-EPA  140 (157)
Q Consensus        64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai~~~~-d~~  140 (157)
                        .++|.|++.++......+.+   .++-++++++. .++++.+-|||+ ++.+.++.+.| +|++++|++++... +..
T Consensus       167 --~G~~~iivt~i~~~g~~~g~---~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~  240 (254)
T TIGR00735       167 --LGAGEILLTSMDKDGTKSGY---DLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIG  240 (254)
T ss_pred             --cCCCEEEEeCcCcccCCCCC---CHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHH
Confidence              47899999776653222222   34556666666 378999999999 69999999888 99999999987533 444


Q ss_pred             HHHHHHH
Q 031554          141 HVISLMR  147 (157)
Q Consensus       141 ~~~~~l~  147 (157)
                      +..+.++
T Consensus       241 ~~~~~~~  247 (254)
T TIGR00735       241 EVKEYLA  247 (254)
T ss_pred             HHHHHHH
Confidence            4444443

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.61  E-value=2.1e-06  Score=67.27  Aligned_cols=122  Identities=19%  Similarity=0.197  Sum_probs=85.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEecCC-----------CCHHhHHhhHhcCCCCCeEEE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVALKPG-----------TSVEEVYPLVEGANPVEMVLV   73 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l~~~-----------t~~~~~~~~~~~~~~~d~vl~   73 (157)
                      ..-++.+.++||+.|.+.-++..+  +-.-+.+++.|. ++.+++...           ++.+.++.+.   ..++.+++
T Consensus        90 ~edv~~~l~~Ga~~viigt~~~~~--~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~  164 (233)
T cd04723          90 LENAQEWLKRGASRVIVGTETLPS--DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLA---KWPEELIV  164 (233)
T ss_pred             HHHHHHHHHcCCCeEEEcceeccc--hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHH---HhCCeEEE
Confidence            345677889999999999887654  233444555565 666665431           2455566665   34888999


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ..+..-..++...   ++-++++.+. .++++.+.|||+ .+.+..+.+.|++.+++||+++..
T Consensus       165 ~di~~~G~~~g~~---~~~~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g  224 (233)
T cd04723         165 LDIDRVGSGQGPD---LELLERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG  224 (233)
T ss_pred             EEcCccccCCCcC---HHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence            8887543333333   3445555555 478999999999 699999999999999999998864

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=98.60  E-value=4.8e-06  Score=65.74  Aligned_cols=133  Identities=17%  Similarity=0.187  Sum_probs=87.5

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEec--C------------------C-CCHHhHHhhHhcC
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALK--P------------------G-TSVEEVYPLVEGA   65 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~--~------------------~-t~~~~~~~~~~~~   65 (157)
                      .++.+.+.|++.|.+..+...+| ..+-+..+..| -++.+++.  .                  + ++.+.++++.+  
T Consensus        88 ~~~~~l~~Ga~~Viigt~~l~~p-~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--  164 (253)
T PRK02083         88 DARRLLRAGADKVSINSAAVANP-ELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE--  164 (253)
T ss_pred             HHHHHHHcCCCEEEEChhHhhCc-HHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH--
Confidence            44556668999999998777777 44444444444 23344442  1                  1 22344455543  


Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH-cCCCEEEEcccccC-CCCHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS-AGANCIVAGSSVFG-APEPAHV  142 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~-~Gad~vV~GSai~~-~~d~~~~  142 (157)
                      .+++.+++.++......|.+   .++.++++++.. ++++.+-|||+ .+.+.++.+ .|+|.+++||++.. .-++.+.
T Consensus       165 ~g~~~ii~~~i~~~g~~~g~---d~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~  240 (253)
T PRK02083        165 LGAGEILLTSMDRDGTKNGY---DLELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGEL  240 (253)
T ss_pred             cCCCEEEEcCCcCCCCCCCc---CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHH
Confidence            47899988766653333443   356667777663 68999999999 589988876 59999999999874 3455655


Q ss_pred             HHHHH
Q 031554          143 ISLMR  147 (157)
Q Consensus       143 ~~~l~  147 (157)
                      .+.++
T Consensus       241 ~~~~~  245 (253)
T PRK02083        241 KAYLA  245 (253)
T ss_pred             HHHHH
Confidence            55554

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.59  E-value=5.2e-07  Score=72.44  Aligned_cols=90  Identities=17%  Similarity=0.238  Sum_probs=64.1

Q ss_pred             HHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                      ...++.+|+..  .++++.+  +| .+.+.+.++  .++|+|++-         .|.++.++++.+..  .+++++++-|
T Consensus       177 ~~av~~~r~~~~~~~I~VEv--~t-leea~eA~~--~gaD~I~LD---------~~~~e~l~~~v~~~--~~~i~leAsG  240 (277)
T PRK05742        177 AQAVAAAHRIAPGKPVEVEV--ES-LDELRQALA--AGADIVMLD---------ELSLDDMREAVRLT--AGRAKLEASG  240 (277)
T ss_pred             HHHHHHHHHhCCCCeEEEEe--CC-HHHHHHHHH--cCCCEEEEC---------CCCHHHHHHHHHHh--CCCCcEEEEC
Confidence            55677777764  5566666  55 444444443  689999762         24455555544322  2578999999


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      |||.+|++++.++|+|++++|+...+++
T Consensus       241 GIt~~ni~~~a~tGvD~Isvg~lt~s~~  268 (277)
T PRK05742        241 GINESTLRVIAETGVDYISIGAMTKDVK  268 (277)
T ss_pred             CCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence            9999999999999999999999777653

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=98.58  E-value=3.7e-06  Score=65.40  Aligned_cols=123  Identities=20%  Similarity=0.259  Sum_probs=79.6

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHH-HcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIK-SKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir-~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      .++.+.++.++++|-|.|.+..-..  .+.+.+++++|| +.+..+.+..+..+.+      .   +.+|.+++|++--.
T Consensus        28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~i------s---~~aDavff~svLNS   98 (240)
T COG1646          28 EEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGI------S---PYADAVFFPSVLNS   98 (240)
T ss_pred             cccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhcc------C---ccCCeEEEEEEecC
Confidence            3567788999999999999995431  122388999999 6677666655433322      1   45677777765311


Q ss_pred             ----CC--Ccc---------------------------------c-chhH------------------------------
Q 031554           80 ----FG--GQK---------------------------------F-MPEM------------------------------   89 (157)
Q Consensus        80 ----~~--gq~---------------------------------~-~~~~------------------------------   89 (157)
                          +-  -|.                                 . .|..                              
T Consensus        99 ~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~  178 (240)
T COG1646          99 DNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGD  178 (240)
T ss_pred             CCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCC
Confidence                11  000                                 0 0000                              


Q ss_pred             ---HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC
Q 031554           90 ---MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        90 ---~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                         .+.+++.+   ...++.+.|||+ .++++++.++|||.+|+|..+.+++
T Consensus       179 Pv~~e~v~~v~---~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~  227 (240)
T COG1646         179 PVPVEMVSRVL---SDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP  227 (240)
T ss_pred             CcCHHHHHHhh---ccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence               11111111   124789999999 7999999999999999999998754

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.57  E-value=5e-06  Score=65.57  Aligned_cols=130  Identities=17%  Similarity=0.235  Sum_probs=92.0

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC------------CC---CHHhHHhhHhcCCCCCeE
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP------------GT---SVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~------------~t---~~~~~~~~~~~~~~~d~v   71 (157)
                      .-++.+.++||+.|.+.-++..++  ++++.+.++|-++.+++..            .+   +.+.+.++.+  ..+..+
T Consensus        86 e~~~~~l~~Ga~rvvigT~a~~~p--~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~--~g~~~i  161 (241)
T PRK14114         86 DYAEKLRKLGYRRQIVSSKVLEDP--SFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKE--YGLEEI  161 (241)
T ss_pred             HHHHHHHHCCCCEEEECchhhCCH--HHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHh--cCCCEE
Confidence            456778899999999999888877  6777777777666665532            12   3444555543  367899


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-----C-CCEEEEcccccCCC-CHHHHH
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-----G-ANCIVAGSSVFGAP-EPAHVI  143 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-----G-ad~vV~GSai~~~~-d~~~~~  143 (157)
                      +++.+.--...+-+.   ++.++++++. .+.++.+.||++ .+++..+.+.     | ++++++|||++... ++.++.
T Consensus       162 i~tdI~rdGt~~G~d---~el~~~l~~~-~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~~  237 (241)
T PRK14114        162 VHTEIEKDGTLQEHD---FSLTRKIAIE-AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVMK  237 (241)
T ss_pred             EEEeechhhcCCCcC---HHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHHH
Confidence            998887643333333   4445666655 478999999999 6999999886     6 99999999998643 444444


Q ss_pred             H
Q 031554          144 S  144 (157)
Q Consensus       144 ~  144 (157)
                      +
T Consensus       238 ~  238 (241)
T PRK14114        238 R  238 (241)
T ss_pred             H
Confidence            3

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.57  E-value=2.5e-06  Score=73.76  Aligned_cols=125  Identities=22%  Similarity=0.232  Sum_probs=85.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHH--HHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQ--ELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~--~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      ..-++.+.++|+|.|.+-.- ..+...  +.++++|+.--..-+.. |..|..+... ..+  .++|.|.+ ++.||...
T Consensus       250 ~~r~~~l~~ag~d~i~iD~~-~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~-a~~--aGaD~i~v-g~g~G~~~  324 (505)
T PLN02274        250 KERLEHLVKAGVDVVVLDSS-QGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQN-LIQ--AGVDGLRV-GMGSGSIC  324 (505)
T ss_pred             HHHHHHHHHcCCCEEEEeCC-CCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHH-HHH--cCcCEEEE-CCCCCccc
Confidence            56788999999999999653 233323  78999998532222322 4455554444 443  69999876 55555211


Q ss_pred             cc--------cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           83 QK--------FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        83 q~--------~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ..        -....+..+.++.+. .+++|.+||||+ ...+....++|||.+.+||++...
T Consensus       325 ~t~~~~~~g~~~~~~i~~~~~~~~~-~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t  386 (505)
T PLN02274        325 TTQEVCAVGRGQATAVYKVASIAAQ-HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGT  386 (505)
T ss_pred             cCccccccCCCcccHHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhccc
Confidence            11        012355567777665 368999999999 799999999999999999998764

>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=98.56  E-value=7.2e-06  Score=63.36  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=83.4

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc-CCceEEEecCCC--CHHhHHhhHhcCCCCCeEEEEeeeC-
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK-GMRPGVALKPGT--SVEEVYPLVEGANPVEMVLVMTVEP-   78 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m~v~p-   78 (157)
                      .+|....+.+.+.+.|+|-+|..   .+ ..+++.+|+. +.++.-++...+  .+....++.   +.+|++|+-+-.| 
T Consensus        64 ~~~~~i~~~~~~~~~d~vQLHg~---e~-~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~---~~~d~~L~Ds~~~~  136 (210)
T PRK01222         64 ASDEEIDEIVETVPLDLLQLHGD---ET-PEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYY---GDADGLLLDAYVGL  136 (210)
T ss_pred             CCHHHHHHHHHhcCCCEEEECCC---CC-HHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhh---ccCCEEEEcCCCCC
Confidence            35777788888999999999975   23 4677788774 566666665544  344444454   5789999987554 


Q ss_pred             -CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccC
Q 031554           79 -GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFG  135 (157)
Q Consensus        79 -G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~  135 (157)
                       |..|..|.-..+.  +   +.  ..++.++|||+++|+.+++.. ++.++=+-|.+=.
T Consensus       137 ~GGtG~~~dw~~l~--~---~~--~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~  188 (210)
T PRK01222        137 PGGTGKTFDWSLLP--A---GL--AKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVES  188 (210)
T ss_pred             CCCCCCccchHHhh--h---cc--CCCEEEECCCCHHHHHHHHHhcCCCEEEecCceEC
Confidence             5557776544331  1   12  457999999999999998864 7888877777653

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=98.56  E-value=4.5e-06  Score=64.99  Aligned_cols=119  Identities=16%  Similarity=0.198  Sum_probs=81.4

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCc-eEEEec--C-------------------CCCHHhHHhhHhcC
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMR-PGVALK--P-------------------GTSVEEVYPLVEGA   65 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~-~gl~l~--~-------------------~t~~~~~~~~~~~~   65 (157)
                      -++.+.+.|++.|.+..+...++ ..+-+..++.+.+ +-+++.  .                   ..+++.++.+.+  
T Consensus        88 d~~~~~~~G~~~vilg~~~l~~~-~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--  164 (232)
T TIGR03572        88 DAKKLLSLGADKVSINTAALENP-DLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQ--  164 (232)
T ss_pred             HHHHHHHcCCCEEEEChhHhcCH-HHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHH--
Confidence            44557788999999998877776 5444445555544 333332  2                   123444555543  


Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHH-HHHcCCCEEEEcccc
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE-AASAGANCIVAGSSV  133 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~-~~~~Gad~vV~GSai  133 (157)
                      .++|.+++.++.+....+..   .++-++++++.. +.++.+-|||+ .+++.. +...|||.+++||++
T Consensus       165 ~G~d~i~i~~i~~~g~~~g~---~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~  230 (232)
T TIGR03572       165 LGAGEILLNSIDRDGTMKGY---DLELIKTVSDAV-SIPVIALGGAGSLDDLVEVALEAGASAVAAASLF  230 (232)
T ss_pred             cCCCEEEEeCCCccCCcCCC---CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence            57899999987653222222   356667777663 68999999999 789988 888999999999986

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=98.56  E-value=5e-06  Score=67.21  Aligned_cols=134  Identities=20%  Similarity=0.272  Sum_probs=88.3

Q ss_pred             ChHHHHH---HHHhCC-CCEEEEcc-----cC----C---cchHHHHHHHHHHc-CCceEEEecCCCC-HHhHHhhHhcC
Q 031554            4 NPLDYVE---PLGKAG-ASGFTFHV-----EI----S---KDNWQELVQRIKSK-GMRPGVALKPGTS-VEEVYPLVEGA   65 (157)
Q Consensus         4 ~p~~~i~---~~~~~g-ad~v~vh~-----e~----~---~~~~~~~i~~ir~~-g~~~gl~l~~~t~-~~~~~~~~~~~   65 (157)
                      +|+.|.+   .+.++| +|.|-++.     ..    .   .+.+.++++.+|+. .+-+++=++|+.+ ...+.+.++- 
T Consensus       102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~-  180 (301)
T PRK07259        102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEE-  180 (301)
T ss_pred             CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHH-
Confidence            4555554   446678 99998832     21    1   12237888889987 5666666776532 2223333322 


Q ss_pred             CCCCeEEEEeeeCCC------------------CCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCE
Q 031554           66 NPVEMVLVMTVEPGF------------------GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANC  126 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~------------------~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~  126 (157)
                      .++|.|.+..+.+|.                  .|....+..++.++++++.. +++|...|||+ .+++.++..+|||.
T Consensus       181 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~  259 (301)
T PRK07259        181 AGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV-DIPIIGMGGISSAEDAIEFIMAGASA  259 (301)
T ss_pred             cCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCc
Confidence            578988764433332                  22222344677888888865 79999999995 89999999999999


Q ss_pred             EEEcccccCCCCH
Q 031554          127 IVAGSSVFGAPEP  139 (157)
Q Consensus       127 vV~GSai~~~~d~  139 (157)
                      +-+||+++..++.
T Consensus       260 V~igr~ll~~P~~  272 (301)
T PRK07259        260 VQVGTANFYDPYA  272 (301)
T ss_pred             eeEcHHHhcCcHH
Confidence            9999998864443

>cd02812 PcrB_like PcrB_like proteins

Probab=98.55  E-value=3.6e-06  Score=65.40  Aligned_cols=47  Identities=30%  Similarity=0.386  Sum_probs=40.0

Q ss_pred             HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           90 MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        90 ~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      .+.++++++...+.++.+.|||+ +++++++.++|||.+|+||++++.
T Consensus       163 ~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~  210 (219)
T cd02812         163 PEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED  210 (219)
T ss_pred             HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence            44567777654478999999997 799999999999999999999974

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=98.54  E-value=4.6e-06  Score=65.59  Aligned_cols=131  Identities=15%  Similarity=0.181  Sum_probs=90.8

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC--------------CCCHHhHHhhHhcCCCCCeEE
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP--------------GTSVEEVYPLVEGANPVEMVL   72 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~--------------~t~~~~~~~~~~~~~~~d~vl   72 (157)
                      +-++.+.++||+.+.+..+...+| +-+-+.+++.+-++.+++..              .++++.++.+.+  .+++.++
T Consensus        88 edv~~~l~~Ga~kvviGs~~l~~p-~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~--~G~~~ii  164 (241)
T PRK14024         88 ESLEAALATGCARVNIGTAALENP-EWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDS--AGCSRYV  164 (241)
T ss_pred             HHHHHHHHCCCCEEEECchHhCCH-HHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHh--cCCCEEE
Confidence            467788899999999998888877 55555556666555443321              122444454443  5889999


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH---HcCCCEEEEcccccCCC-CHHHHHH
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA---SAGANCIVAGSSVFGAP-EPAHVIS  144 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~---~~Gad~vV~GSai~~~~-d~~~~~~  144 (157)
                      ++.+......+.   ..++.++++++. .++++.+-|||+ .+++..+.   +.|+|++++|++++... ++.++.+
T Consensus       165 v~~~~~~g~~~G---~d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~  237 (241)
T PRK14024        165 VTDVTKDGTLTG---PNLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALA  237 (241)
T ss_pred             EEeecCCCCccC---CCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHH
Confidence            998876323222   246677777776 478999999999 68988875   35999999999987543 5555443

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=98.54  E-value=1.2e-06  Score=70.23  Aligned_cols=90  Identities=20%  Similarity=0.302  Sum_probs=61.6

Q ss_pred             HHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEE
Q 031554           32 QELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vd  108 (157)
                      .+.++.+|+.  +.++|+.+  +|..+..+...   .++|+|.+-...|         ..++. ++.+++..+++++++-
T Consensus       171 ~~av~~~R~~~~~~~IgVev--~t~eea~~A~~---~gaD~I~ld~~~p---------~~l~~~~~~~~~~~~~i~i~As  236 (272)
T cd01573         171 LKALARLRATAPEKKIVVEV--DSLEEALAAAE---AGADILQLDKFSP---------EELAELVPKLRSLAPPVLLAAA  236 (272)
T ss_pred             HHHHHHHHHhCCCCeEEEEc--CCHHHHHHHHH---cCCCEEEECCCCH---------HHHHHHHHHHhccCCCceEEEE
Confidence            4566777765  24566666  56555455544   6899998853333         33343 3334555568999999


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ||||++|+.++.++|||++++|+ ++.+
T Consensus       237 GGI~~~ni~~~~~~Gvd~I~vsa-i~~a  263 (272)
T cd01573         237 GGINIENAAAYAAAGADILVTSA-PYYA  263 (272)
T ss_pred             CCCCHHHHHHHHHcCCcEEEECh-hhcC
Confidence            99999999999999999995555 5543

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=98.53  E-value=2.4e-06  Score=69.55  Aligned_cols=131  Identities=18%  Similarity=0.257  Sum_probs=88.5

Q ss_pred             HHHHHHHhCCCCEEEEcccC---------C---c-------------chHHHHHHHHHHc---CCceEEEecCCC-----
Q 031554            7 DYVEPLGKAGASGFTFHVEI---------S---K-------------DNWQELVQRIKSK---GMRPGVALKPGT-----   53 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~---------~---~-------------~~~~~~i~~ir~~---g~~~gl~l~~~t-----   53 (157)
                      .-.+.+.++|+|.|-+|.-.         +   .             ..+.++++.+|+.   ++.+++-+++.+     
T Consensus       145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g  224 (327)
T cd02803         145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG  224 (327)
T ss_pred             HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence            34456678999999999641         0   0             0125788888885   556788788653     


Q ss_pred             -CHHh----HHhhHhcCCCCCeEEEEeeeCCCCCcccc---------hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHH
Q 031554           54 -SVEE----VYPLVEGANPVEMVLVMTVEPGFGGQKFM---------PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE  118 (157)
Q Consensus        54 -~~~~----~~~~~~~~~~~d~vl~m~v~pG~~gq~~~---------~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~  118 (157)
                       +.+.    ++.+.+  .++|+|-+-   .|+..+...         ...++.++++++.. +++|.+.|||+ .+++.+
T Consensus       225 ~~~~e~~~la~~l~~--~G~d~i~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~  298 (327)
T cd02803         225 LTLEEAIEIAKALEE--AGVDALHVS---GGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEE  298 (327)
T ss_pred             CCHHHHHHHHHHHHH--cCCCEEEeC---CCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHH
Confidence             2333    233332  368988654   333322211         23455677777764 78999999998 899999


Q ss_pred             HHHc-CCCEEEEcccccCCCCHHHHH
Q 031554          119 AASA-GANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       119 ~~~~-Gad~vV~GSai~~~~d~~~~~  143 (157)
                      +++. |||.|.+|++++..+|+...+
T Consensus       299 ~l~~g~aD~V~igR~~ladP~l~~k~  324 (327)
T cd02803         299 ILAEGKADLVALGRALLADPDLPNKA  324 (327)
T ss_pred             HHHCCCCCeeeecHHHHhCccHHHHH
Confidence            9998 899999999999878765443

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=98.52  E-value=8.3e-06  Score=64.46  Aligned_cols=131  Identities=13%  Similarity=0.148  Sum_probs=92.2

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      +|. .+.+...+|||.|.++....+. .+.++++.+++.|+.+-+.++....++..  +.   .+.+.|.   ++.- +=
T Consensus       113 d~~-QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a--~~---~ga~iiG---INnR-dL  182 (247)
T PRK13957        113 DEI-QIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLA--LD---CGAEIIG---INTR-DL  182 (247)
T ss_pred             CHH-HHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHH--Hh---CCCCEEE---EeCC-CC
Confidence            455 4455566999999999877764 34889999999999999999533333332  22   4677664   4421 11


Q ss_pred             cccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554           83 QKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM  146 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l  146 (157)
                      ..| .-.++.-.++....| +..+..-+||+ ++++..+..+ +|+|.+|+++.+++||.++++.|
T Consensus       183 ~t~-~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~~~l  246 (247)
T PRK13957        183 DTF-QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSL  246 (247)
T ss_pred             ccc-eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHHHHh
Confidence            111 122445556666665 45556779999 7999999887 99999999999999999988765

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=98.52  E-value=1.2e-06  Score=70.44  Aligned_cols=88  Identities=13%  Similarity=0.392  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHH-HhhCCCCcEEE
Q 031554           31 WQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-RNRYPSLDIEV  107 (157)
Q Consensus        31 ~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l-~~~~~~~~I~v  107 (157)
                      +.+.++.+|++  ..+  +.+..+ .++.+.+.++  .++|.|++         -.|.++.++++.++ ++..+++.+++
T Consensus       176 i~~av~~~r~~~~~~k--IeVEv~-tleqa~ea~~--agaDiI~L---------Dn~~~e~l~~av~~~~~~~~~~~lea  241 (284)
T PRK06096        176 WSGAINQLRRHAPEKK--IVVEAD-TPKEAIAALR--AQPDVLQL---------DKFSPQQATEIAQIAPSLAPHCTLSL  241 (284)
T ss_pred             HHHHHHHHHHhCCCCC--EEEECC-CHHHHHHHHH--cCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEE
Confidence            36788888886  344  444434 5556666665  58999998         24666766665444 33457889999


Q ss_pred             EcCCCHhhHHHHHHcCCCEEEEccc
Q 031554          108 DGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus       108 dGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      -||||++|++++.+.|+|++++|+-
T Consensus       242 SGGI~~~ni~~yA~tGvD~Is~gal  266 (284)
T PRK06096        242 AGGINLNTLKNYADCGIRLFITSAP  266 (284)
T ss_pred             ECCCCHHHHHHHHhcCCCEEEECcc
Confidence            9999999999999999999988875

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=98.52  E-value=8.2e-07  Score=70.93  Aligned_cols=87  Identities=16%  Similarity=0.270  Sum_probs=60.7

Q ss_pred             HHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE
Q 031554           32 QELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd  108 (157)
                      ...++.+|+.   +.++|+.+  +|..+..+...   .++|||++-   |      +.++.++++.+..  ...+++++-
T Consensus       165 ~~av~~~r~~~~~~~~Igvev--~t~eea~~A~~---~gaDyI~ld---~------~~~e~lk~~v~~~--~~~ipi~As  228 (265)
T TIGR00078       165 EKAVKRARAAAPFALKIEVEV--ESLEEAEEAAE---AGADIIMLD---N------MKPEEIKEAVQLL--KGRVLLEAS  228 (265)
T ss_pred             HHHHHHHHHhCCCCCeEEEEe--CCHHHHHHHHH---cCCCEEEEC---C------CCHHHHHHHHHHh--cCCCcEEEE
Confidence            5677788875   46677777  45544444444   689999873   2      3334444433321  124889999


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      ||||.+|++++.++|||++.+ |+++.
T Consensus       229 GGI~~~ni~~~a~~Gvd~Isv-gait~  254 (265)
T TIGR00078       229 GGITLDNLEEYAETGVDVISS-GALTH  254 (265)
T ss_pred             CCCCHHHHHHHHHcCCCEEEe-CHHHc
Confidence            999999999999999999999 55554

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.50  E-value=1.6e-06  Score=69.71  Aligned_cols=93  Identities=22%  Similarity=0.367  Sum_probs=66.6

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHH-HHhhC--CCCcEEEE
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS-LRNRY--PSLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~-l~~~~--~~~~I~vd  108 (157)
                      .+.++.+|++....-+.+..++ ++.+.+.++  .++|.|++-.         |.++.++++.+ +++.+  +++.+++-
T Consensus       170 ~~av~~~r~~~~~~kIeVEv~~-leea~~a~~--agaDiI~LDn---------~~~e~l~~~v~~l~~~~~~~~~~leaS  237 (278)
T PRK08385        170 EEAIRRAKEFSVYKVVEVEVES-LEDALKAAK--AGADIIMLDN---------MTPEEIREVIEALKREGLRERVKIEVS  237 (278)
T ss_pred             HHHHHHHHHhCCCCcEEEEeCC-HHHHHHHHH--cCcCEEEECC---------CCHHHHHHHHHHHHhcCcCCCEEEEEE
Confidence            6788888887532224444444 444545554  6899988742         34566666444 55544  67899999


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ||||.+|++++.++|+|.+++|+..+++
T Consensus       238 GGI~~~ni~~yA~tGvD~Is~galt~sa  265 (278)
T PRK08385        238 GGITPENIEEYAKLDVDVISLGALTHSV  265 (278)
T ss_pred             CCCCHHHHHHHHHcCCCEEEeChhhcCC
Confidence            9999999999999999999999977754

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=98.50  E-value=7.6e-06  Score=67.20  Aligned_cols=119  Identities=18%  Similarity=0.293  Sum_probs=82.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      ...++.+.+.+++.|+++.-.+.   .++++.++++|+++...+   ++++.++...+  ..+|.|.+-+.+.|  |..-
T Consensus       103 ~~~~~~~~~~~~~~v~~~~G~p~---~~~i~~l~~~gi~v~~~v---~s~~~A~~a~~--~G~D~iv~qG~eAG--GH~g  172 (330)
T PF03060_consen  103 EEQLDVALEAKPDVVSFGFGLPP---PEVIERLHAAGIKVIPQV---TSVREARKAAK--AGADAIVAQGPEAG--GHRG  172 (330)
T ss_dssp             HHHHHHHHHS--SEEEEESSSC----HHHHHHHHHTT-EEEEEE---SSHHHHHHHHH--TT-SEEEEE-TTSS--EE--
T ss_pred             ccccccccccceEEEEeecccch---HHHHHHHHHcCCcccccc---CCHHHHHHhhh--cCCCEEEEeccccC--CCCC
Confidence            45667777788889999987543   688999999999877766   56666666665  58999998877654  3222


Q ss_pred             -c-hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           86 -M-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        86 -~-~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                       . ...+.-+.++++.. +++|.+.|||. .+.+......|||++.+||.+.-
T Consensus       173 ~~~~~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~  224 (330)
T PF03060_consen  173 FEVGSTFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA  224 (330)
T ss_dssp             -SSG-HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHT
T ss_pred             ccccceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEe
Confidence             1 24677778888774 59999999997 68899999999999999998653

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=98.48  E-value=4.3e-06  Score=68.57  Aligned_cols=121  Identities=26%  Similarity=0.275  Sum_probs=80.9

Q ss_pred             HHHHHHHhCCC--CEEEE-----cccCCcchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            7 DYVEPLGKAGA--SGFTF-----HVEISKDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         7 ~~i~~~~~~ga--d~v~v-----h~e~~~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      ..++.+.++|+  |.+.+     |.+    .+.++++++|+.--.+-+.. +..| .+....+.+  .++|.+.+ +..|
T Consensus       100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~----~~~e~I~~ir~~~p~~~vi~g~V~t-~e~a~~l~~--aGad~i~v-g~~~  171 (326)
T PRK05458        100 DFVDQLAAEGLTPEYITIDIAHGHSD----SVINMIQHIKKHLPETFVIAGNVGT-PEAVRELEN--AGADATKV-GIGP  171 (326)
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCchH----HHHHHHHHHHhhCCCCeEEEEecCC-HHHHHHHHH--cCcCEEEE-CCCC
Confidence            56778899955  99999     644    33788999998632233333 4444 445555554  58999765 4445


Q ss_pred             CCC-------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           79 GFG-------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        79 G~~-------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      |..       |.....-.+.-++++++.. +.+|.+||||. ..++.+...+|||.+.+|+++.+.
T Consensus       172 G~~~~t~~~~g~~~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~  236 (326)
T PRK05458        172 GKVCITKIKTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGH  236 (326)
T ss_pred             CcccccccccCCCCCccHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCC
Confidence            511       1111111333466666543 68899999999 799999999999999999998753

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.47  E-value=1.3e-06  Score=70.02  Aligned_cols=92  Identities=21%  Similarity=0.344  Sum_probs=66.2

Q ss_pred             HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHH-HhhCCCCcEEE
Q 031554           32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-RNRYPSLDIEV  107 (157)
Q Consensus        32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l-~~~~~~~~I~v  107 (157)
                      .+.++.+|+. .  .++.+.+  + .++.+.+.++  .++|.|++-       +  |.++.++++-++ +...+++.+.+
T Consensus       169 ~~~v~~~k~~~p~~~~I~VEv--~-tleea~~A~~--~GaDiI~LD-------n--~~~e~l~~~v~~~~~~~~~~~ieA  234 (273)
T PRK05848        169 KEFIQHARKNIPFTAKIEIEC--E-SLEEAKNAMN--AGADIVMCD-------N--MSVEEIKEVVAYRNANYPHVLLEA  234 (273)
T ss_pred             HHHHHHHHHhCCCCceEEEEe--C-CHHHHHHHHH--cCCCEEEEC-------C--CCHHHHHHHHHHhhccCCCeEEEE
Confidence            7888888885 2  4444445  4 4555555554  589988752       1  355666654443 33346788999


Q ss_pred             EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      -||||++|++++.+.|+|.+++||.+..++
T Consensus       235 sGgIt~~ni~~ya~~GvD~IsvG~l~~sa~  264 (273)
T PRK05848        235 SGNITLENINAYAKSGVDAISSGSLIHQAT  264 (273)
T ss_pred             ECCCCHHHHHHHHHcCCCEEEeChhhcCCC
Confidence            999999999999999999999999888553

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.47  E-value=8.9e-06  Score=67.82  Aligned_cols=126  Identities=21%  Similarity=0.309  Sum_probs=84.2

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccC-------Cc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEI-------SK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~-------~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      +-.++++.+.++|+|.+++|...       .. ++ ..+.+.+++.++.+..  ..-...+.++.+++  .++|.|.+ +
T Consensus       142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~-~~i~~~ik~~~ipVIa--G~V~t~e~A~~l~~--aGAD~V~V-G  215 (368)
T PRK08649        142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEP-LNLKEFIYELDVPVIV--GGCVTYTTALHLMR--TGAAGVLV-G  215 (368)
T ss_pred             CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCH-HHHHHHHHHCCCCEEE--eCCCCHHHHHHHHH--cCCCEEEE-C
Confidence            34678899999999999999632       11 35 7788888887766532  22344555665654  59999966 6


Q ss_pred             eeCCCC--Ccc-c---chhHHHHHHHHH---hh------CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           76 VEPGFG--GQK-F---MPEMMDKVRSLR---NR------YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        76 v~pG~~--gq~-~---~~~~~~ki~~l~---~~------~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ..||..  +.. .   .| .+..|.+..   +.      ..+++|.+||||+ ...+.....+|||.+.+||.+...
T Consensus       216 ~G~Gs~~~t~~~~g~g~p-~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t  291 (368)
T PRK08649        216 IGPGAACTSRGVLGIGVP-MATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARA  291 (368)
T ss_pred             CCCCcCCCCcccCCCCcC-HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhccc
Confidence            666621  111 1   12 222222222   11      1258999999998 689999999999999999998753

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.46  E-value=9.5e-06  Score=63.61  Aligned_cols=121  Identities=12%  Similarity=0.121  Sum_probs=82.4

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCC---------------CCHHhHHhhHhcCCCCCe
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPG---------------TSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~---------------t~~~~~~~~~~~~~~~d~   70 (157)
                      +-++.+.+.||+.|.+.-++..+| +-+-+.++++| -++.+++...               ++.+.++++.+  ..+.-
T Consensus        86 e~~~~~l~~Ga~kvvigt~a~~~p-~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~--~g~~~  162 (232)
T PRK13586         86 EKAKRLLSLDVNALVFSTIVFTNF-NLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNE--LELLG  162 (232)
T ss_pred             HHHHHHHHCCCCEEEECchhhCCH-HHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHh--cCCCE
Confidence            456788899999999999998888 54444566664 3444444321               23344444443  35678


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      ++++.+.--...+-+.-+.   ++++++. ++. +.+.||++ .+++..+.+.|+|++++|+|++.
T Consensus       163 ii~tdI~~dGt~~G~d~el---~~~~~~~-~~~-viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~  223 (232)
T PRK13586        163 IIFTYISNEGTTKGIDYNV---KDYARLI-RGL-KEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL  223 (232)
T ss_pred             EEEecccccccCcCcCHHH---HHHHHhC-CCC-EEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence            8888887643444444444   4444444 444 67899999 59999999999999999999984

>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

Probab=98.46  E-value=1.2e-06  Score=69.03  Aligned_cols=147  Identities=20%  Similarity=0.228  Sum_probs=85.4

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe---eeCCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT---VEPGFGG   82 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~---v~pG~~g   82 (157)
                      .+.+.+.+.|+|.+|+|.-.-.+.+..+.+...++| .-.+++.++++.-..+...--..+--+.|+-++   -..|..|
T Consensus        80 ~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dg  159 (240)
T COG0284          80 LAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDG  159 (240)
T ss_pred             HHHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcCceEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceE
Confidence            456678889999999998775566577777888777 445666555544431100000000011111111   1224444


Q ss_pred             cccchhHHHHHHHHHhh-----CCCCcEEEEcCCCHh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554           83 QKFMPEMMDKVRSLRNR-----YPSLDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~-----~~~~~I~vdGGI~~~--~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      ---.+.-.++++++...     .|++....+||==..  +..+...+|+|.+|+|+.|+.++||.++++++.+.+...
T Consensus       160 vv~~~~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~~~  237 (240)
T COG0284         160 VVCSAEEVAAIREILGPDFLILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREIARE  237 (240)
T ss_pred             EEcCHHHHHHHHHhcCCCcEEECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHHHh
Confidence            33334455566665541     133322223332222  256677799999999999999999999999888776653

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=98.45  E-value=6e-06  Score=68.80  Aligned_cols=127  Identities=19%  Similarity=0.192  Sum_probs=83.2

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccC--------CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEI--------SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~--------~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      +..++.+.+.++|+|.+++|...        ..++ ..+.+.+++.++.+..  .--.+.+.+.++++  .++|.|++. 
T Consensus       143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p-~~l~~~i~~~~IPVI~--G~V~t~e~A~~~~~--aGaDgV~~G-  216 (369)
T TIGR01304       143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEP-LNLKEFIGELDVPVIA--GGVNDYTTALHLMR--TGAAGVIVG-  216 (369)
T ss_pred             CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCH-HHHHHHHHHCCCCEEE--eCCCCHHHHHHHHH--cCCCEEEEC-
Confidence            56788999999999999999421        2245 6777777777765543  23345666666664  589999832 


Q ss_pred             eeCCCCCccc----ch--hHHHHHHHHHhh-----C-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           76 VEPGFGGQKF----MP--EMMDKVRSLRNR-----Y-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        76 v~pG~~gq~~----~~--~~~~ki~~l~~~-----~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      -.-+......    .|  ..+..+.++++.     . ..++|.+||||. ...+...+.+|||.+.+||++...
T Consensus       217 ~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a  290 (369)
T TIGR01304       217 PGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARA  290 (369)
T ss_pred             CCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhh
Confidence            1111011100    11  233344443331     1 248999999999 699999999999999999998753

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=98.45  E-value=2.6e-06  Score=66.50  Aligned_cols=122  Identities=20%  Similarity=0.230  Sum_probs=84.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEe--cCC--------------CCHHhHHhhHhcCCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVAL--KPG--------------TSVEEVYPLVEGANPVE   69 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l--~~~--------------t~~~~~~~~~~~~~~~d   69 (157)
                      .-++.+.++||+.|.+.-++..++ +-+-+.+..+|. ++.+++  .-.              ++.+.++++.+  ..+.
T Consensus        86 ed~~~ll~~Ga~~Vvigt~~~~~~-~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~--~g~~  162 (229)
T PF00977_consen   86 EDAERLLDAGADRVVIGTEALEDP-ELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEE--LGAG  162 (229)
T ss_dssp             HHHHHHHHTT-SEEEESHHHHHCC-HHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHH--TT-S
T ss_pred             HHHHHHHHhCCCEEEeChHHhhch-hHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHh--cCCc
Confidence            456788999999999999888887 555555555666 554444  222              13445555554  4788


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .++++.+.--...+-+.   ++.++++++.. +.++.+.|||+ .+++.++.+.|++.+++|++++.
T Consensus       163 ~ii~tdi~~dGt~~G~d---~~~~~~l~~~~-~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~  225 (229)
T PF00977_consen  163 EIILTDIDRDGTMQGPD---LELLKQLAEAV-NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE  225 (229)
T ss_dssp             EEEEEETTTTTTSSS-----HHHHHHHHHHH-SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred             EEEEeeccccCCcCCCC---HHHHHHHHHHc-CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence            99999887643444333   34566666654 78999999995 79999999999999999999874

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=98.43  E-value=1.7e-05  Score=64.30  Aligned_cols=138  Identities=14%  Similarity=0.178  Sum_probs=94.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc-----hHHHHHHHHHHcCCceEEEe-------------cCCCCHHhHHhhHhcCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD-----NWQELVQRIKSKGMRPGVAL-------------KPGTSVEEVYPLVEGANPV   68 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~-----~~~~~i~~ir~~g~~~gl~l-------------~~~t~~~~~~~~~~~~~~~   68 (157)
                      +.+..+.+.|+++|-+=.-..+.     ...++.+.++.+|+.+-..+             +.-|..+.+.++.+  .++
T Consensus        90 ~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~--tgv  167 (293)
T PRK07315         90 EDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVE--TGI  167 (293)
T ss_pred             HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHH--cCC
Confidence            47788899999888776322221     11445555666665442221             11256666666664  689


Q ss_pred             CeEEEE--eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554           69 EMVLVM--TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus        69 d~vl~m--~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG--I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~  144 (157)
                      |++.+-  ++|=-|.+.. .+-.+++++++++..++++++.-||  |+.++++++.+.|++.+-++|+++.  ++.++++
T Consensus       168 D~LAv~iG~vHG~y~t~~-k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~--~~~~~~~  244 (293)
T PRK07315        168 DFLAAGIGNIHGPYPENW-EGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQI--AFANATR  244 (293)
T ss_pred             CEEeeccccccccCCCCC-CcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHH--HHHHHHH
Confidence            999886  5641122211 1345778888888876799999999  9999999999999999999999985  6666666


Q ss_pred             HHHHH
Q 031554          145 LMRKS  149 (157)
Q Consensus       145 ~l~~~  149 (157)
                      ++.+.
T Consensus       245 ~~~~~  249 (293)
T PRK07315        245 KFARD  249 (293)
T ss_pred             HHHHh
Confidence            65543

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=98.41  E-value=2.8e-05  Score=62.94  Aligned_cols=120  Identities=14%  Similarity=0.208  Sum_probs=83.9

Q ss_pred             HHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            8 YVEPLGKAGASGFTFHVEISKD----NWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      .++.+.+.|+|.+.+|...+..    . .+.++++++. +..+.+-.  -.+.+.++...+  .++|.|.+-. +.| ..
T Consensus       134 ~i~~~~~~g~~~i~l~~~~p~~~~~~~-~~~i~~l~~~~~~pvivK~--v~s~~~a~~a~~--~G~d~I~v~~-~gG-~~  206 (299)
T cd02809         134 LLRRAEAAGYKALVLTVDTPVLGRRLT-WDDLAWLRSQWKGPLILKG--ILTPEDALRAVD--AGADGIVVSN-HGG-RQ  206 (299)
T ss_pred             HHHHHHHcCCCEEEEecCCCCCCCCCC-HHHHHHHHHhcCCCEEEee--cCCHHHHHHHHH--CCCCEEEEcC-CCC-CC
Confidence            4555677899999999876531    1 3678888886 55544432  144566666655  5899998742 212 11


Q ss_pred             cccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554           83 QKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ..+.+..+.-+.++++..+ +++|.++|||+ ..++.+....|||.+-+|+.++
T Consensus       207 ~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l  260 (299)
T cd02809         207 LDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFL  260 (299)
T ss_pred             CCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence            1124456777888877654 69999999998 7899888899999999999755

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=98.41  E-value=1.8e-05  Score=62.51  Aligned_cols=130  Identities=15%  Similarity=0.161  Sum_probs=87.6

Q ss_pred             CCCEEEEcccC-----CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554           16 GASGFTFHVEI-----SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP   87 (157)
Q Consensus        16 gad~v~vh~e~-----~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~   87 (157)
                      +-|||-+-.-.     .+++ .+++++.+..   |+.+-.-+  ..+.-..+++.+  -++..|.-++..-|.+---..+
T Consensus       104 ~~~wIKLEVi~D~~~LlPD~-~etl~Aae~Lv~eGF~VlPY~--~~D~v~a~rLed--~Gc~aVMPlgsPIGSg~Gl~n~  178 (267)
T CHL00162        104 DNNFVKLEVISDPKYLLPDP-IGTLKAAEFLVKKGFTVLPYI--NADPMLAKHLED--IGCATVMPLGSPIGSGQGLQNL  178 (267)
T ss_pred             CCCeEEEEEeCCCcccCCCh-HHHHHHHHHHHHCCCEEeecC--CCCHHHHHHHHH--cCCeEEeeccCcccCCCCCCCH
Confidence            36787654221     1245 6777776653   55433333  334444555554  3566666655555544323344


Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      ..   |+.+++. ++++|.+|+||+ ++++.+..+.|+|++-+.|+|++++||.+..+.++..++-.|
T Consensus       179 ~~---l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AGR  242 (267)
T CHL00162        179 LN---LQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAGR  242 (267)
T ss_pred             HH---HHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHHH
Confidence            44   4445554 579999999999 799999999999999999999999999999999998776443

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=98.41  E-value=1.6e-05  Score=65.33  Aligned_cols=127  Identities=22%  Similarity=0.220  Sum_probs=83.1

Q ss_pred             HHHHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--
Q 031554            6 LDYVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG--   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~--   81 (157)
                      ...++.+.++|+|.+.+...  ..+.. .+.++++|+.+-.+-+....-...+.++.+.+  .++|.|.+ +.-||..  
T Consensus        96 ~~~~~~l~eagv~~I~vd~~~G~~~~~-~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~--aGaD~I~v-g~g~G~~~~  171 (325)
T cd00381          96 KERAEALVEAGVDVIVIDSAHGHSVYV-IEMIKFIKKKYPNVDVIAGNVVTAEAARDLID--AGADGVKV-GIGPGSICT  171 (325)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCcHHH-HHHHHHHHHHCCCceEEECCCCCHHHHHHHHh--cCCCEEEE-CCCCCcCcc
Confidence            46788899999999887532  22334 78899999876223333333456666666665  58999976 3344431  


Q ss_pred             Ccc---cchhHHHHHHHHHhhC--CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           82 GQK---FMPEMMDKVRSLRNRY--PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        82 gq~---~~~~~~~ki~~l~~~~--~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ++.   .....+.-+.++++..  .+++|.+||||+ ...+....++|||.+.+||.+...
T Consensus       172 t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t  232 (325)
T cd00381         172 TRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGT  232 (325)
T ss_pred             cceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccc
Confidence            110   0111233333333322  268999999998 699999999999999999988753

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=98.40  E-value=2.7e-05  Score=60.12  Aligned_cols=120  Identities=23%  Similarity=0.298  Sum_probs=89.0

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCCC--CHHhHHhhHhcCCCCCeEEEEeee---
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPGT--SVEEVYPLVEGANPVEMVLVMTVE---   77 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m~v~---   77 (157)
                      ++....+.+.+.+.|.|=+|.+   ++ .+.++++|+.. +.+.-+++...  ..+....+.   ..+|.+++-+-.   
T Consensus        63 ~~~~i~~i~~~~~ld~VQlHG~---e~-~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~---~~~d~~LlDa~~~~~  135 (208)
T COG0135          63 SIEEILEIAEELGLDAVQLHGD---ED-PEYIDQLKEELGVPVIKAISVSEEGDLELAAREE---GPVDAILLDAKVPGL  135 (208)
T ss_pred             CHHHHHHHHHhcCCCEEEECCC---CC-HHHHHHHHhhcCCceEEEEEeCCccchhhhhhcc---CCccEEEEcCCCCCC
Confidence            4455667778889999999986   34 58888888864 77766665544  355555555   789999998753   


Q ss_pred             CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCC-CEEEEcccccCC
Q 031554           78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA-NCIVAGSSVFGA  136 (157)
Q Consensus        78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Ga-d~vV~GSai~~~  136 (157)
                      +|..||.|.-..+...      ....++...||+|++|+.+.++.+. .++=+-|.+=.+
T Consensus       136 ~GGtG~~fDW~~l~~~------~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGVE~~  189 (208)
T COG0135         136 PGGTGQTFDWNLLPKL------RLSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGVESS  189 (208)
T ss_pred             CCCCCcEECHHHhccc------cccCCEEEECCCCHHHHHHHHHhcCCceEEeccccccC
Confidence            5888999876655443      1345699999999999999999888 888777877443

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=98.39  E-value=2.6e-05  Score=63.70  Aligned_cols=136  Identities=20%  Similarity=0.213  Sum_probs=95.3

Q ss_pred             HHHHHHhC-CCCEEEEc--ccC---CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe-ee
Q 031554            8 YVEPLGKA-GASGFTFH--VEI---SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT-VE   77 (157)
Q Consensus         8 ~i~~~~~~-gad~v~vh--~e~---~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~-v~   77 (157)
                      ..+++.|+ |-|||-+-  .|.   .+++ .+++++++..   |+.+-..++  +++...+.+.++  ++  +.+|- -.
T Consensus       155 ~a~lare~~~~~~iKlEvi~e~~~llpd~-~~~v~aa~~L~~~Gf~v~~yc~--~d~~~a~~l~~~--g~--~avmPl~~  227 (326)
T PRK11840        155 TLRLAREAGGWDLVKLEVLGDAKTLYPDM-VETLKATEILVKEGFQVMVYCS--DDPIAAKRLEDA--GA--VAVMPLGA  227 (326)
T ss_pred             HHHHHHHhcCCCeEEEEEcCCCCCcccCH-HHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHhc--CC--EEEeeccc
Confidence            34445554 66887654  322   2245 8899999998   887655553  455556666643  33  56664 33


Q ss_pred             CCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           78 PGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        78 pG~~gq~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      |=.+|+.. .|+.   |+.+.+. +++++.+|+||+ ++++.+..+.|+|++-+-|+|.+++||....+.|+..++-.|
T Consensus       228 pIGsg~gv~~p~~---i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aGr  302 (326)
T PRK11840        228 PIGSGLGIQNPYT---IRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAGR  302 (326)
T ss_pred             cccCCCCCCCHHH---HHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHHH
Confidence            32244443 4444   4444444 579999999999 799999999999999999999999999999999998876443

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=98.38  E-value=3.8e-06  Score=66.45  Aligned_cols=131  Identities=18%  Similarity=0.287  Sum_probs=95.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcch-HHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDN-WQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~-~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      ..+..+...|||.|.+.....++. +.++.+.+++.|+.+=+.++....++.+..     -+.+.|   +++-- +=..|
T Consensus       120 yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~-----~ga~iI---GINnR-dL~tf  190 (254)
T COG0134         120 YQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALK-----LGAKII---GINNR-DLTTL  190 (254)
T ss_pred             HHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHh-----CCCCEE---EEeCC-Ccchh
Confidence            367788889999999998777643 488999999999999999964444443333     256666   34421 11111


Q ss_pred             chhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           86 MPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                       .-.++.-.++....| +..+..-.||+ ++++..+...|||+|-+|+++.+++|+.++++.+.
T Consensus       191 -~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l~  253 (254)
T COG0134         191 -EVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALRELL  253 (254)
T ss_pred             -eecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHHhh
Confidence             123444555555554 47788999999 89999999999999999999999999998888763

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=98.38  E-value=3.7e-05  Score=61.99  Aligned_cols=126  Identities=16%  Similarity=0.177  Sum_probs=88.1

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcc--h---HHHHHHHHHHcCCceEEEecC--------------CCCHHhHHhhHhcC
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKD--N---WQELVQRIKSKGMRPGVALKP--------------GTSVEEVYPLVEGA   65 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~--~---~~~~i~~ir~~g~~~gl~l~~--------------~t~~~~~~~~~~~~   65 (157)
                      +.+.++.+.+.|+++|.+=.-..+.  .   ..++.+.++.+|..+-..+..              -|+.+.+.++.+. 
T Consensus        86 ~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~-  164 (282)
T TIGR01859        86 SYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKE-  164 (282)
T ss_pred             CHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHH-
Confidence            4567888999999887665322221  1   144556667778765544332              3466667777742 


Q ss_pred             CCCCeEE--EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCCHhhHHHHHHcCCCEEEEccccc
Q 031554           66 NPVEMVL--VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        66 ~~~d~vl--~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG--GI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      .++|++.  +.++++-+.+.  ..-.+++++++++.. ++++..-|  ||+.++++++.++|++.+-+++.+.
T Consensus       165 tgvD~Lavs~Gt~hg~~~~~--~~l~~e~L~~i~~~~-~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~  234 (282)
T TIGR01859       165 TGVDYLAAAIGTSHGKYKGE--PGLDFERLKEIKELT-NIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCR  234 (282)
T ss_pred             HCcCEEeeccCccccccCCC--CccCHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHH
Confidence            3899998  45556444432  223477888888774 69999999  9999999999999999999999875

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=98.38  E-value=3.9e-05  Score=61.96  Aligned_cols=135  Identities=17%  Similarity=0.237  Sum_probs=86.7

Q ss_pred             cChHHHHHHH---HhC--CCCEEEEcccCCc------------chHHHHHHHHHHc-CCceEEEecCCC-CHHhHHhhHh
Q 031554            3 TNPLDYVEPL---GKA--GASGFTFHVEISK------------DNWQELVQRIKSK-GMRPGVALKPGT-SVEEVYPLVE   63 (157)
Q Consensus         3 ~~p~~~i~~~---~~~--gad~v~vh~e~~~------------~~~~~~i~~ir~~-g~~~gl~l~~~t-~~~~~~~~~~   63 (157)
                      .+|+.|.+.+   .++  ++|.+-+-.-.+.            +.+.++++++|+. ++.+.+=++++. ....+.+.++
T Consensus       100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~  179 (300)
T TIGR01037       100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAE  179 (300)
T ss_pred             CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHH
Confidence            4566665443   443  3899988533211            2237788888875 666666676543 2223333333


Q ss_pred             cCCCCCeEEEEeeeCC------------------CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCC
Q 031554           64 GANPVEMVLVMTVEPG------------------FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA  124 (157)
Q Consensus        64 ~~~~~d~vl~m~v~pG------------------~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Ga  124 (157)
                      - .++|.|.+....+|                  +.|....+..++.++++++.. +++|..-|||+ ++++.++..+||
T Consensus       180 ~-~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GA  257 (300)
T TIGR01037       180 E-AGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGA  257 (300)
T ss_pred             H-cCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHcCC
Confidence            2 58999987532222                  122222233456778887764 68999999996 899999999999


Q ss_pred             CEEEEcccccCCCCH
Q 031554          125 NCIVAGSSVFGAPEP  139 (157)
Q Consensus       125 d~vV~GSai~~~~d~  139 (157)
                      |.+-+||+++..++.
T Consensus       258 d~V~igr~~l~~p~~  272 (300)
T TIGR01037       258 SAVQVGTAVYYRGFA  272 (300)
T ss_pred             CceeecHHHhcCchH
Confidence            999999998875543

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.38  E-value=3.9e-05  Score=63.03  Aligned_cols=143  Identities=14%  Similarity=0.261  Sum_probs=93.2

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc-----------chHHHHHHHHHHc-CCceEEEecCCC-CHHhHHhhHhcCCCCCeEEE
Q 031554            7 DYVEPLGKAGASGFTFHVEISK-----------DNWQELVQRIKSK-GMRPGVALKPGT-SVEEVYPLVEGANPVEMVLV   73 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~-----------~~~~~~i~~ir~~-g~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~   73 (157)
                      ++++.+.++|+|++.+|.-.+.           +.+.+.++.+++. .+-+.+=+.|.. .+..+.+.++. .++|.|.+
T Consensus       118 ~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~-~G~dgI~~  196 (334)
T PRK07565        118 DYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDA-AGADGLVL  196 (334)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHH-cCCCeEEE
Confidence            4556667889999999753211           1125677888876 455555577764 34444343333 58999987


Q ss_pred             EeeeCC---------------CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-
Q 031554           74 MTVEPG---------------FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-  136 (157)
Q Consensus        74 m~v~pG---------------~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-  136 (157)
                      ....++               .+|....+..++-++++++.. +++|..-|||. .+++.++..+|||.+=+||+++.. 
T Consensus       197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g  275 (334)
T PRK07565        197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHG  275 (334)
T ss_pred             ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhC
Confidence            643322               223333445677788887764 78999999999 799999999999999999998863 


Q ss_pred             CCH-HHHHHHHHHHHH
Q 031554          137 PEP-AHVISLMRKSVE  151 (157)
Q Consensus       137 ~d~-~~~~~~l~~~~~  151 (157)
                      ++. .+..+.|++.+.
T Consensus       276 ~~~~~~i~~~L~~~l~  291 (334)
T PRK07565        276 PDYIGTILRGLEDWME  291 (334)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            322 233444444433

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=98.37  E-value=2.5e-05  Score=61.67  Aligned_cols=130  Identities=10%  Similarity=-0.036  Sum_probs=87.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC---------------C---CHHhHHhhHhcCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG---------------T---SVEEVYPLVEGANP   67 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~---------------t---~~~~~~~~~~~~~~   67 (157)
                      .+-++.+.+.|||.|.+.-++..++ .-+-+.++..|-++.+++...               +   +.+.++++.+  .+
T Consensus        86 ~e~~~~~l~~Ga~~vvigT~a~~~p-~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~--~g  162 (243)
T TIGR01919        86 DSSLRAALTGGRARVNGGTAALENP-WWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDS--GG  162 (243)
T ss_pred             HHHHHHHHHcCCCEEEECchhhCCH-HHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHh--CC
Confidence            3456778899999999998888887 444444555665655544321               2   2233444443  36


Q ss_pred             CCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH---HcCCCEEEEcccccCCC-CHHHH
Q 031554           68 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA---SAGANCIVAGSSVFGAP-EPAHV  142 (157)
Q Consensus        68 ~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~---~~Gad~vV~GSai~~~~-d~~~~  142 (157)
                      +..+++..+.-....+-+.   ++-++++++. .+.++.+.||++ .+++..+.   ..|++++++|++++... +..++
T Consensus       163 ~~~ii~tdI~~dGt~~G~d---~~l~~~l~~~-~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~~~  238 (243)
T TIGR01919       163 CSRVVVTDSKKDGLSGGPN---ELLLEVVAAR-TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLEAA  238 (243)
T ss_pred             CCEEEEEecCCcccCCCcC---HHHHHHHHhh-CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHHHH
Confidence            7889998887643333333   3445555555 478999999999 58998875   46999999999998643 44443

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=98.35  E-value=5.9e-05  Score=61.87  Aligned_cols=143  Identities=14%  Similarity=0.254  Sum_probs=94.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc-----------chHHHHHHHHHHc-CCceEEEecCCC-CHHhHHhhHhcCCCCCeEEE
Q 031554            7 DYVEPLGKAGASGFTFHVEISK-----------DNWQELVQRIKSK-GMRPGVALKPGT-SVEEVYPLVEGANPVEMVLV   73 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~-----------~~~~~~i~~ir~~-g~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~   73 (157)
                      ++.+.+.++|+|++-+|.-.+.           +.+.+.++.+++. ..-+.+=+.|.. .+..+.+.++- .++|.|.+
T Consensus       116 ~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~-~Gadgi~~  194 (325)
T cd04739         116 DYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDA-AGADGLVL  194 (325)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHH-cCCCeEEE
Confidence            4566667889999999865321           1125778888876 454555577763 34333333322 58999987


Q ss_pred             EeeeC---------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-
Q 031554           74 MTVEP---------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-  136 (157)
Q Consensus        74 m~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-  136 (157)
                      ....+               |.+|....+..++-++++++.. +++|..-|||. .+++.++..+|||.+=+||+++.. 
T Consensus       195 ~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~g  273 (325)
T cd04739         195 FNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHG  273 (325)
T ss_pred             EcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcC
Confidence            64321               2334444455677788887754 79999999999 799999989999999999998853 


Q ss_pred             CCH-HHHHHHHHHHHH
Q 031554          137 PEP-AHVISLMRKSVE  151 (157)
Q Consensus       137 ~d~-~~~~~~l~~~~~  151 (157)
                      ++. .+-.+.|.+.++
T Consensus       274 p~~~~~i~~~L~~~l~  289 (325)
T cd04739         274 PDYIGTLLAGLEAWME  289 (325)
T ss_pred             chHHHHHHHHHHHHHH
Confidence            332 334444554443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=98.34  E-value=2.1e-05  Score=70.31  Aligned_cols=132  Identities=16%  Similarity=0.190  Sum_probs=97.2

Q ss_pred             HHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      .+.+...+|||.|.+.....+. .+.++++.+++.|+.+-+.++....++  +.+.   .+.+.|-+=..+.    ..| 
T Consensus       125 QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~--~a~~---~ga~iiGINnRdL----~tf-  194 (695)
T PRK13802        125 QIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIE--RAIA---AGAKVIGINARNL----KDL-  194 (695)
T ss_pred             HHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHH--HHHh---CCCCEEEEeCCCC----ccc-
Confidence            5667788999999999887763 448999999999999999995333332  3333   4777774432222    112 


Q ss_pred             hhHHHHHHHHHhhCCC-CcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYPS-LDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~-~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      .-.++.-.+|....|. ..+..-+||+ ++++..+.++|+|.|.+|+++.+++||...++.|...
T Consensus       195 ~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~  259 (695)
T PRK13802        195 KVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKA  259 (695)
T ss_pred             eeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhc
Confidence            1234555666666554 5566779999 7999999999999999999999999999999888654

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=98.31  E-value=6.2e-05  Score=61.65  Aligned_cols=131  Identities=15%  Similarity=0.283  Sum_probs=86.5

Q ss_pred             cChHHHHH---HHHhCCCCEEEEcccCC----------------cchHHHHHHHHHHc-CCceEEEec----CCC-CHHh
Q 031554            3 TNPLDYVE---PLGKAGASGFTFHVEIS----------------KDNWQELVQRIKSK-GMRPGVALK----PGT-SVEE   57 (157)
Q Consensus         3 ~~p~~~i~---~~~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~-g~~~gl~l~----~~t-~~~~   57 (157)
                      .+|+.+.+   .+.+.|+|.|-++.-.+                .+.+.++++.+++. ++.+++-+.    +++ ....
T Consensus        74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~  153 (321)
T PRK10415         74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVE  153 (321)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHH
Confidence            57888844   34568999999986654                22236777777764 556666552    221 2222


Q ss_pred             HHhhHhcCCCCCeEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH-cCCCEEEEccccc
Q 031554           58 VYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS-AGANCIVAGSSVF  134 (157)
Q Consensus        58 ~~~~~~~~~~~d~vl~m~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~-~Gad~vV~GSai~  134 (157)
                      +.+.++. .++|.|.+.   +.+..|.+. +..++.++++++.. +++|..-|||+ .+++.++.+ .|+|++.+|++++
T Consensus       154 ~a~~le~-~G~d~i~vh---~rt~~~~~~G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l  228 (321)
T PRK10415        154 IAQLAED-CGIQALTIH---GRTRACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ  228 (321)
T ss_pred             HHHHHHH-hCCCEEEEe---cCccccccCCCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence            3233322 578998664   433333332 23567788888764 68999999995 899999886 7999999999988


Q ss_pred             CCCC
Q 031554          135 GAPE  138 (157)
Q Consensus       135 ~~~d  138 (157)
                      ..|.
T Consensus       229 ~nP~  232 (321)
T PRK10415        229 GRPW  232 (321)
T ss_pred             cCCh
Confidence            6553

>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate

Probab=98.31  E-value=6.6e-06  Score=62.86  Aligned_cols=123  Identities=19%  Similarity=0.273  Sum_probs=79.0

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +|.+.++.+.+.+.|+|-+|...   + .++.+.++ .+..+.-++.+......+..+... ..+|++|+- ...|..|+
T Consensus        59 ~~~~I~~~~~~~~ld~vQLHG~e---~-~e~~~~l~-~~~~vi~~~~v~~~~~~~~~~~~~-~~~d~~LlD-~~~GgtG~  131 (197)
T PF00697_consen   59 SPEEILEIVEELGLDVVQLHGDE---S-PEYIKLLR-AGLPVIKAIHVDKDIDLLDYLERY-ESVDYFLLD-SGSGGTGK  131 (197)
T ss_dssp             -HHHHHHHHHHCTESEEEE-SGG-----HHHHHHHH-TTSEEEEEEEESSCHSCCHHCHCS-TT-SEEEEE-SSSTSSSS
T ss_pred             CHHHHHHHHHHcCCCEEEECCCC---C-HHHHHHhh-cCceEEEEEEeCCccchHHHHHhc-ccccEEeEc-cCCCcCCc
Confidence            45667788889999999999874   4 57777777 467777777666544322222211 355999987 44566788


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCC
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA  136 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~  136 (157)
                      .|.-..+.++.+   .....++.+.||||++|+.++++ .++.++=+-|.+=.+
T Consensus       132 ~~dw~~~~~~~~---~~~~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsSGvE~~  182 (197)
T PF00697_consen  132 TFDWSLLKKIVE---SYSPKPVILAGGLNPENVREAIRQVRPYGVDVSSGVETS  182 (197)
T ss_dssp             ---GGGGCCCHH---T-GTSTEEEESS--TTTHHHHHHHC--SEEEESGGGEEE
T ss_pred             ccCHHHhhhhhh---hcccCcEEEEcCCChHHHHHHHHhcCceEEEeCCccccC
Confidence            887776655544   22368899999999999999888 899999888887543

In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.30  E-value=4.6e-05  Score=65.87  Aligned_cols=126  Identities=16%  Similarity=0.254  Sum_probs=82.7

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      ...++.+.++|+|.|.+-....  ... .+.++++|+.--.+-+....-...+..+.+.+  .++|.|.+ ++-||...-
T Consensus       243 ~~~~~~l~~ag~d~i~id~a~G~s~~~-~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~--aGad~I~v-g~g~Gs~~~  318 (495)
T PTZ00314        243 IERAAALIEAGVDVLVVDSSQGNSIYQ-IDMIKKLKSNYPHVDIIAGNVVTADQAKNLID--AGADGLRI-GMGSGSICI  318 (495)
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCchHH-HHHHHHHHhhCCCceEEECCcCCHHHHHHHHH--cCCCEEEE-CCcCCcccc
Confidence            4567889999999999765211  122 47899999863223333322334455555655  68998876 666763111


Q ss_pred             c--c----ch--hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           84 K--F----MP--EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        84 ~--~----~~--~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      .  .    .|  ..+..+.++.+. .++++.+||||. ...+....++|||.+.+||++.+.
T Consensus       319 t~~~~~~g~p~~~ai~~~~~~~~~-~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~  379 (495)
T PTZ00314        319 TQEVCAVGRPQASAVYHVARYARE-RGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGT  379 (495)
T ss_pred             cchhccCCCChHHHHHHHHHHHhh-cCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccc
Confidence            1  0    11  233344444333 368999999998 799999999999999999998763

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.29  E-value=3.6e-05  Score=60.20  Aligned_cols=116  Identities=14%  Similarity=0.181  Sum_probs=78.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHH-HcCCceEEEecC---------------CCCHHhHHhhHhcCCCCCe
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIK-SKGMRPGVALKP---------------GTSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir-~~g~~~gl~l~~---------------~t~~~~~~~~~~~~~~~d~   70 (157)
                      .-++.+.+.|++.+.+.-++. ++  ++++.+. +.|- +.+++..               -++.+.++.+.   ..+..
T Consensus        86 edv~~l~~~G~~~vivGtaa~-~~--~~l~~~~~~~g~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~---~~~~~  158 (228)
T PRK04128         86 ESIKDAYEIGVENVIIGTKAF-DL--EFLEKVTSEFEG-ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLK---NYVNR  158 (228)
T ss_pred             HHHHHHHHCCCCEEEECchhc-CH--HHHHHHHHHcCC-EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHH---HHhCE
Confidence            456677888999999998887 55  5665554 4453 5454431               11234444444   34678


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      ++++.+.--  |....+.      ++.+..++.++.+.|||+ .+++.++.+.|++++++||+++...
T Consensus       159 ii~t~i~~d--Gt~~G~d------~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~  218 (228)
T PRK04128        159 FIYTSIERD--GTLTGIE------EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGR  218 (228)
T ss_pred             EEEEeccch--hcccCHH------HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCC
Confidence            888888753  3222222      233333578999999999 6999999999999999999998643

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=98.29  E-value=1.8e-05  Score=64.98  Aligned_cols=130  Identities=21%  Similarity=0.243  Sum_probs=90.1

Q ss_pred             hHHHHHHHHhCC--CCEEEEcccCCc----------chHHHHHHHHHHc-C-----CceEEEecCCCCHHhHHhhH---h
Q 031554            5 PLDYVEPLGKAG--ASGFTFHVEISK----------DNWQELVQRIKSK-G-----MRPGVALKPGTSVEEVYPLV---E   63 (157)
Q Consensus         5 p~~~i~~~~~~g--ad~v~vh~e~~~----------~~~~~~i~~ir~~-g-----~~~gl~l~~~t~~~~~~~~~---~   63 (157)
                      +++|.+.+.+++  ||++.+-.-.+.          +.+.++++++|+. +     +-+.+=+.|..+.+.+.++.   +
T Consensus       147 ~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~  226 (327)
T cd04738         147 VEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVAL  226 (327)
T ss_pred             HHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHH
Confidence            567777666654  999888542221          1236788888774 2     55666677776543333332   2


Q ss_pred             cCCCCCeEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCE
Q 031554           64 GANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANC  126 (157)
Q Consensus        64 ~~~~~d~vl~m~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~  126 (157)
                      - .++|.|.+....+               |++|....+..++.++++++... +++|..-|||+ .+.+.++..+|||.
T Consensus       227 ~-aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~  305 (327)
T cd04738         227 E-HGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASL  305 (327)
T ss_pred             H-cCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCH
Confidence            2 5899998765322               34454445567888999988764 68999999995 89999999999999


Q ss_pred             EEEcccccC
Q 031554          127 IVAGSSVFG  135 (157)
Q Consensus       127 vV~GSai~~  135 (157)
                      +-+||+++.
T Consensus       306 V~vg~~~~~  314 (327)
T cd04738         306 VQLYTGLVY  314 (327)
T ss_pred             HhccHHHHh
Confidence            999999864

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.28  E-value=3e-05  Score=66.24  Aligned_cols=127  Identities=20%  Similarity=0.249  Sum_probs=82.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--C
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG--G   82 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~--g   82 (157)
                      ...++.+.++|+|.+.+-.-.. ...+.+.++++|+.--.+-+....-...+..+.+++  .++|.|-+ ++.||..  .
T Consensus       226 ~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~v-g~g~G~~~~t  302 (450)
T TIGR01302       226 KERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRV-GIGPGSICTT  302 (450)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEE-CCCCCcCCcc
Confidence            4567788999999999864211 122377888898862222222222344455555554  58999977 6677721  1


Q ss_pred             cc---cc-h--hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           83 QK---FM-P--EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        83 q~---~~-~--~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      +.   +. |  ..+..+.++.+. .+++|.+||||+ ..++....++|||.+.+||++.+.
T Consensus       303 ~~~~~~g~p~~~~i~~~~~~~~~-~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~  362 (450)
T TIGR01302       303 RIVAGVGVPQITAVYDVAEYAAQ-SGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGT  362 (450)
T ss_pred             ceecCCCccHHHHHHHHHHHHhh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence            11   11 1  233334433332 478999999999 799999999999999999998764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=98.27  E-value=7.4e-05  Score=59.53  Aligned_cols=132  Identities=18%  Similarity=0.221  Sum_probs=88.0

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHHcC---CceEEEec--CC---------------CCHHhHHhhH
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD----NWQELVQRIKSKG---MRPGVALK--PG---------------TSVEEVYPLV   62 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~~g---~~~gl~l~--~~---------------t~~~~~~~~~   62 (157)
                      ..++.+.++||+.|.+.--+..+    | +-+-+.++++|   +-+++...  ..               ++.+.+.++.
T Consensus        95 e~i~~~l~~Ga~rViigT~Av~~~~~~p-~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~  173 (262)
T PLN02446         95 ENAMSYLDAGASHVIVTSYVFRDGQIDL-ERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFL  173 (262)
T ss_pred             HHHHHHHHcCCCEEEEchHHHhCCCCCH-HHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHH
Confidence            67889999999999999766665    6 55555556665   22233332  11               2334445555


Q ss_pred             hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc--CCCEEEEcccc--cCCC
Q 031554           63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA--GANCIVAGSSV--FGAP  137 (157)
Q Consensus        63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~--Gad~vV~GSai--~~~~  137 (157)
                      +  ..++.+++-.+.-....+-+   .++-++++++. .+++|.+-||++ .+++..+.+.  |+..+|+|+|+  |...
T Consensus       174 ~--~g~~eii~TdI~rDGtl~G~---d~el~~~l~~~-~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~  247 (262)
T PLN02446        174 A--AYCDEFLVHGVDVEGKRLGI---DEELVALLGEH-SPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGN  247 (262)
T ss_pred             H--hCCCEEEEEEEcCCCcccCC---CHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCC
Confidence            4  35888888777653222222   34555666666 578999999999 7999999887  57899999999  7543


Q ss_pred             -CHHHHHHH
Q 031554          138 -EPAHVISL  145 (157)
Q Consensus       138 -d~~~~~~~  145 (157)
                       +.++++.|
T Consensus       248 ~~l~ea~~~  256 (262)
T PLN02446        248 LPYDDVVAW  256 (262)
T ss_pred             ccHHHHHHH
Confidence             44555444

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.26  E-value=1e-05  Score=65.42  Aligned_cols=92  Identities=17%  Similarity=0.204  Sum_probs=65.1

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL  111 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI  111 (157)
                      .+.++.+|+.....-+.+..+| ++.+.+.++  .++|.|++-         +|.++.+++.-++.+  .++.+++-|||
T Consensus       193 ~~av~~~r~~~~~~kIeVEvet-leea~eA~~--aGaDiImLD---------nmspe~l~~av~~~~--~~~~lEaSGGI  258 (294)
T PRK06978        193 GAALDAAFALNAGVPVQIEVET-LAQLETALA--HGAQSVLLD---------NFTLDMMREAVRVTA--GRAVLEVSGGV  258 (294)
T ss_pred             HHHHHHHHHhCCCCcEEEEcCC-HHHHHHHHH--cCCCEEEEC---------CCCHHHHHHHHHhhc--CCeEEEEECCC
Confidence            7788888886432235555555 445555554  689999883         245555555333222  35789999999


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      |++|++++.+.|+|.+++|+...+++
T Consensus       259 t~~ni~~yA~tGVD~IS~galthsa~  284 (294)
T PRK06978        259 NFDTVRAFAETGVDRISIGALTKDVR  284 (294)
T ss_pred             CHHHHHHHHhcCCCEEEeCccccCCc
Confidence            99999999999999999998766654

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.24  E-value=1.3e-05  Score=64.69  Aligned_cols=92  Identities=13%  Similarity=0.169  Sum_probs=64.8

Q ss_pred             HHHHHHHHHcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554           32 QELVQRIKSKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG  110 (157)
                      .+.++.+|++.- ..-+.+..+|. +.+.+.++  .++|.|++-         +|.|+.+++.-++.+  .++.+++-||
T Consensus       184 ~~av~~~r~~~~~~~kIeVEv~tl-eea~~a~~--agaDiImLD---------nmspe~l~~av~~~~--~~~~leaSGG  249 (290)
T PRK06559        184 QKAIAQARAYAPFVKMVEVEVESL-AAAEEAAA--AGADIIMLD---------NMSLEQIEQAITLIA--GRSRIECSGN  249 (290)
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCH-HHHHHHHH--cCCCEEEEC---------CCCHHHHHHHHHHhc--CceEEEEECC
Confidence            678888888642 22345554444 55555554  689999883         245565555443322  2578999999


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      ||++|++++.+.|+|.+++|+-..+++
T Consensus       250 I~~~ni~~yA~tGVD~Is~galthsa~  276 (290)
T PRK06559        250 IDMTTISRFRGLAIDYVSSGSLTHSAK  276 (290)
T ss_pred             CCHHHHHHHHhcCCCEEEeCccccCCc
Confidence            999999999999999999999666443

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.24  E-value=1.3e-05  Score=63.22  Aligned_cols=83  Identities=16%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEE
Q 031554           50 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIV  128 (157)
Q Consensus        50 ~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV  128 (157)
                      ...+|++.++.|.+  ..+|.+.+.-.+....|+.-   ..+-|+++.+..  .+++++|||+ .++++.+.++|||-+|
T Consensus        28 ~~~dP~~~A~~~~~--~ga~~lhivDLd~a~~g~~~---n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvv  100 (241)
T PRK14114         28 YEKDPAELVEKLIE--EGFTLIHVVDLSKAIENSVE---NLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQI  100 (241)
T ss_pred             ECCCHHHHHHHHHH--CCCCEEEEEECCCcccCCcc---hHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEE
Confidence            44689998888875  47899999888865666553   344556666654  5899999999 6999999999999999


Q ss_pred             EcccccCCCCH
Q 031554          129 AGSSVFGAPEP  139 (157)
Q Consensus       129 ~GSai~~~~d~  139 (157)
                      +||..++.++.
T Consensus       101 igT~a~~~p~~  111 (241)
T PRK14114        101 VSSKVLEDPSF  111 (241)
T ss_pred             ECchhhCCHHH
Confidence            99999975544

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.23  E-value=2.7e-05  Score=64.37  Aligned_cols=147  Identities=20%  Similarity=0.260  Sum_probs=96.0

Q ss_pred             ChHHHHHHHHhCC--CCEEEEcccCCc----------chHHHHHHHHHHc-C-----CceEEEecCCCCHHhHHhhHhc-
Q 031554            4 NPLDYVEPLGKAG--ASGFTFHVEISK----------DNWQELVQRIKSK-G-----MRPGVALKPGTSVEEVYPLVEG-   64 (157)
Q Consensus         4 ~p~~~i~~~~~~g--ad~v~vh~e~~~----------~~~~~~i~~ir~~-g-----~~~gl~l~~~t~~~~~~~~~~~-   64 (157)
                      .+.+|.+.+.+++  ||++.+-.-.+.          +.+.++++++|+. +     +-+.+=++|+.+.+.+.++.+. 
T Consensus       155 ~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l  234 (344)
T PRK05286        155 AVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLA  234 (344)
T ss_pred             CHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHH
Confidence            3567777776666  999887642211          1236788888875 4     5566668888764333222221 


Q ss_pred             -CCCCCeEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCE
Q 031554           65 -ANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANC  126 (157)
Q Consensus        65 -~~~~d~vl~m~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~  126 (157)
                       -.++|.|.+....+               |++|....+..++-++++++..+ +++|..-|||+ .+++.++..+|||.
T Consensus       235 ~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~  314 (344)
T PRK05286        235 LEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASL  314 (344)
T ss_pred             HHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCH
Confidence             15799998875431               12222223446778888887753 68999999999 79999999999999


Q ss_pred             EEEcccccC-CCCHH-HHHHHHHHHH
Q 031554          127 IVAGSSVFG-APEPA-HVISLMRKSV  150 (157)
Q Consensus       127 vV~GSai~~-~~d~~-~~~~~l~~~~  150 (157)
                      |-+||+++. .++.- +..+.|++.+
T Consensus       315 V~v~~~~~~~gP~~~~~i~~~L~~~l  340 (344)
T PRK05286        315 VQIYSGLIYEGPGLVKEIVRGLARLL  340 (344)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            999999864 35543 3334444443

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=98.23  E-value=1.9e-05  Score=64.96  Aligned_cols=131  Identities=16%  Similarity=0.235  Sum_probs=91.1

Q ss_pred             HHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      .+.++..+|||.|.+-....++ .+.++++.+++.|+.+-+.++....++   ..++. .+++.|-+=..+.    ..|.
T Consensus       195 QI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~Ele---rAl~~-~ga~iIGINNRdL----~Tf~  266 (338)
T PLN02460        195 QIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMD---RVLGI-EGVELIGINNRSL----ETFE  266 (338)
T ss_pred             HHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHH---HHHhc-CCCCEEEEeCCCC----Ccce
Confidence            4557788899999998777664 448999999999999999995443333   33311 2566664322221    1121


Q ss_pred             hhHHHHHHHHHh-----hC--CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           87 PEMMDKVRSLRN-----RY--PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        87 ~~~~~ki~~l~~-----~~--~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                       -.++.-.++..     ..  .++.+..-+||+ ++++..+.++|+|.|-+|+++.+++||.++++.|.
T Consensus       267 -vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l~~L~  334 (338)
T PLN02460        267 -VDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGIAGLF  334 (338)
T ss_pred             -ECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHHHHh
Confidence             12333333333     22  245567779999 79999999999999999999999999999988874

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=98.22  E-value=0.0001  Score=59.58  Aligned_cols=146  Identities=22%  Similarity=0.328  Sum_probs=93.9

Q ss_pred             hHHHHHHH---HhC---CCCEEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhc--
Q 031554            5 PLDYVEPL---GKA---GASGFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEG--   64 (157)
Q Consensus         5 p~~~i~~~---~~~---gad~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~--   64 (157)
                      |+.|++.+   .+.   |+|++-+-.-.+           .+.+.++++.+++. .+-+.+=|.|.++.+.+.++.+.  
T Consensus       102 ~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~  181 (294)
T cd04741         102 AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALN  181 (294)
T ss_pred             HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence            55555544   343   699998854321           12337788888886 45556668888876555444431  


Q ss_pred             CC--CCCeEEEE-------eeeC--------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHH
Q 031554           65 AN--PVEMVLVM-------TVEP--------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEA  119 (157)
Q Consensus        65 ~~--~~d~vl~m-------~v~p--------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~  119 (157)
                      ..  ++|.|...       .+++              |.+|....+..++.++++++..+ +++|..-|||. .+++.++
T Consensus       182 ~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~  261 (294)
T cd04741         182 AFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRM  261 (294)
T ss_pred             ccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHH
Confidence            13  67777641       1221              12233335567888899988765 69999999998 7999999


Q ss_pred             HHcCCCEEEEcccccC-CCCHHHHHHHHHHHHHHH
Q 031554          120 ASAGANCIVAGSSVFG-APEPAHVISLMRKSVEDA  153 (157)
Q Consensus       120 ~~~Gad~vV~GSai~~-~~d~~~~~~~l~~~~~~~  153 (157)
                      ..+|||.+=+||+++. .+.   .++++.+.+++.
T Consensus       262 l~aGA~~Vqv~ta~~~~gp~---~~~~i~~~L~~~  293 (294)
T cd04741         262 RLAGASAVQVGTALGKEGPK---VFARIEKELEDI  293 (294)
T ss_pred             HHcCCCceeEchhhhhcCch---HHHHHHHHHHhh
Confidence            9999999999999874 343   333344444443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]

Probab=98.22  E-value=1.6e-05  Score=63.56  Aligned_cols=95  Identities=20%  Similarity=0.287  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           31 WQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        31 ~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                      +.+.++.+|++ +..+-+.+.++|..+..+.+-   .++|.|++-         .|.|+.++..-++.....++.+++-|
T Consensus       174 i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~---agaDiImLD---------Nm~~e~~~~av~~l~~~~~~~lEaSG  241 (280)
T COG0157         174 ITEAVRRARAAAPFTKKIEVEVESLEEAEEALE---AGADIIMLD---------NMSPEELKEAVKLLGLAGRALLEASG  241 (280)
T ss_pred             HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH---cCCCEEEec---------CCCHHHHHHHHHHhccCCceEEEEeC
Confidence            37889999987 444556676677666656665   789999883         25556555544444445678999999


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      |||++|++.+.+.|+|.|.+|+-....+
T Consensus       242 gIt~~ni~~yA~tGVD~IS~galths~~  269 (280)
T COG0157         242 GITLENIREYAETGVDVISVGALTHSAP  269 (280)
T ss_pred             CCCHHHHHHHhhcCCCEEEeCccccCCc
Confidence            9999999999999999999997655443

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.21  E-value=0.00014  Score=58.98  Aligned_cols=130  Identities=22%  Similarity=0.301  Sum_probs=89.5

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHc-CCceEEEecCCC-CH-HhHHhhH
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEISK---------------DNWQELVQRIKSK-GMRPGVALKPGT-SV-EEVYPLV   62 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~-g~~~gl~l~~~t-~~-~~~~~~~   62 (157)
                      +|+.|.+   .+.+.|+|++.+-.-.+.               +.+.++++.+|+. +.-+.+=+.|+. .+ +.++.+.
T Consensus       111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~  190 (299)
T cd02940         111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAK  190 (299)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHH
Confidence            5655554   445579999988533211               1236778888775 455566576654 22 2333333


Q ss_pred             hcCCCCCeEEEE-------e-----------eeC-----CCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHH
Q 031554           63 EGANPVEMVLVM-------T-----------VEP-----GFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIA  117 (157)
Q Consensus        63 ~~~~~~d~vl~m-------~-----------v~p-----G~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~  117 (157)
                      +  .++|.|.+.       .           +++     |++|....|-.++.|+++++.. ++++|...|||+ .+++.
T Consensus       191 ~--~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~  268 (299)
T cd02940         191 E--GGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAA  268 (299)
T ss_pred             H--cCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHH
Confidence            2  589998752       1           121     4556666677899999999876 479999999999 79999


Q ss_pred             HHHHcCCCEEEEcccccC
Q 031554          118 EAASAGANCIVAGSSVFG  135 (157)
Q Consensus       118 ~~~~~Gad~vV~GSai~~  135 (157)
                      ++..+|||.+-+||+++.
T Consensus       269 ~~l~aGA~~V~i~ta~~~  286 (299)
T cd02940         269 EFLLLGASVVQVCTAVMN  286 (299)
T ss_pred             HHHHcCCChheEceeecc
Confidence            999999999999999775

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.20  E-value=7.3e-05  Score=59.12  Aligned_cols=138  Identities=20%  Similarity=0.249  Sum_probs=88.3

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCC--------HHhHHhhHhc-CCCCCe-
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTS--------VEEVYPLVEG-ANPVEM-   70 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~--------~~~~~~~~~~-~~~~d~-   70 (157)
                      .+++.++|+++|.+.        .|. +..+..-+++++++|+.+.+=++ +|.        .+.+.+.++. +..++- 
T Consensus        81 ~~mL~d~G~~~viiGHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG-Etl~~reag~t~~v~~~Ql~~~l~~l~~~  158 (251)
T COG0149          81 AEMLKDLGAKYVLIGHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG-ETLEEREAGKTLEVLKRQLAAALAALSPE  158 (251)
T ss_pred             HHHHHHcCCCEEEECccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC-CCHHHHhccChHHHHHHHHHHHHhhcCcc
Confidence            468899999999986        232 22346788899999998766554 333        1222222210 022221 


Q ss_pred             -EEEEeeeC----CCCCcccc---hhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHH-HHHcCCCEEEEcccccCCC
Q 031554           71 -VLVMTVEP----GFGGQKFM---PEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAE-AASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        71 -vl~m~v~p----G~~gq~~~---~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~-~~~~Gad~vV~GSai~~~~  137 (157)
                       =.+...+|    |++-..-.   +.+..-|+......    .+++|...|||+++|+.+ +...++|++-+||+..+++
T Consensus       159 ~~~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~  238 (251)
T COG0149         159 ANIVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKAD  238 (251)
T ss_pred             cCeEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecch
Confidence             11224466    64422222   22344455544432    579999999999999976 5788999999999999999


Q ss_pred             CHHHHHHHHHH
Q 031554          138 EPAHVISLMRK  148 (157)
Q Consensus       138 d~~~~~~~l~~  148 (157)
                      |+.+.++.+.+
T Consensus       239 ~f~~ii~~~~~  249 (251)
T COG0149         239 DFLAILEALAK  249 (251)
T ss_pred             hHHHHHHHHhh
Confidence            99888777654

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=98.20  E-value=0.00016  Score=57.51  Aligned_cols=123  Identities=13%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             ChHHHHHHHHhCCCCEEEEc-----ccCC-----cchHHHHHHHHHHcCCceEEE--ecC-------CCCHHh-HHhhHh
Q 031554            4 NPLDYVEPLGKAGASGFTFH-----VEIS-----KDNWQELVQRIKSKGMRPGVA--LKP-------GTSVEE-VYPLVE   63 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh-----~e~~-----~~~~~~~i~~ir~~g~~~gl~--l~~-------~t~~~~-~~~~~~   63 (157)
                      ++..-+..+..+|||+|-+-     ..+.     ... .+++++-++.|..+-+.  +++       +.+++. ++....
T Consensus        90 d~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a-~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~  168 (257)
T TIGR00259        90 DAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNA-GELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVE  168 (257)
T ss_pred             CCHHHHHHHHHhCCCEEEEccEeeeEecccccccccH-HHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHH
Confidence            56667788889999999872     1111     123 56666666656555442  321       234433 332222


Q ss_pred             cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554           64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      . ...|.|++-+.   ..|+.+..+.   ++++|+..++.++.+.||+|++|+.++.+. +|++++||.+=+
T Consensus       169 ~-~~aDavivtG~---~TG~~~d~~~---l~~vr~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~~K~  232 (257)
T TIGR00259       169 R-GLADAVILSGK---TTGTEVDLEL---LKLAKETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATTIKK  232 (257)
T ss_pred             h-cCCCEEEECcC---CCCCCCCHHH---HHHHHhccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCCccc
Confidence            2 45899987422   2366655554   445555556789999999999999999887 999999999753

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=98.20  E-value=8.1e-05  Score=57.38  Aligned_cols=40  Identities=28%  Similarity=0.491  Sum_probs=33.9

Q ss_pred             HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           90 MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        90 ~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .+.++++|+.. +.++.+.|||+ .++++++.++|||.+|+|
T Consensus       165 ~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG  205 (205)
T TIGR01769       165 PETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG  205 (205)
T ss_pred             HHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence            45566666664 78999999997 799999999999999998

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=98.20  E-value=0.00013  Score=60.48  Aligned_cols=129  Identities=19%  Similarity=0.179  Sum_probs=86.8

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCC--------cchH---HHHHHHHHHc-CCceEEEe-cCCCCHHhHHhhHhcCCCCCeE
Q 031554            5 PLDYVEPLGKAGASGFTFHVEIS--------KDNW---QELVQRIKSK-GMRPGVAL-KPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~--------~~~~---~~~i~~ir~~-g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      |+...+.....+||.+.+|....        +...   .+.++.+++. ++-+++=. ...++.+.++.+.+  .++|.|
T Consensus       137 ~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~--~Gvd~I  214 (352)
T PRK05437        137 VEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLAD--AGVKAI  214 (352)
T ss_pred             HHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHH--cCCCEE
Confidence            56666666777999999997431        1121   2678888886 66666533 23466777777765  489999


Q ss_pred             EEEeeeCCCCC------c-----------ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccc
Q 031554           72 LVMTVEPGFGG------Q-----------KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        72 l~m~v~pG~~g------q-----------~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai  133 (157)
                      .+-+ ..|+..      .           .|...+..-+.++++...+++|.++|||+ ..++.++...|||.+-+|+++
T Consensus       215 ~Vsg-~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~  293 (352)
T PRK05437        215 DVAG-AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPF  293 (352)
T ss_pred             EECC-CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHH
Confidence            8843 222110      0           01112445566666654579999999999 799999999999999999987


Q ss_pred             cCC
Q 031554          134 FGA  136 (157)
Q Consensus       134 ~~~  136 (157)
                      +.+
T Consensus       294 l~~  296 (352)
T PRK05437        294 LKA  296 (352)
T ss_pred             HHH
Confidence            753

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.19  E-value=5.4e-05  Score=65.27  Aligned_cols=127  Identities=22%  Similarity=0.262  Sum_probs=81.7

Q ss_pred             hHHHHHHHHhCCCCEEEE---cccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC-
Q 031554            5 PLDYVEPLGKAGASGFTF---HVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-   80 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~v---h~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~-   80 (157)
                      +.+.++.+.++|+|.+.+   |... ... .+.++.+|+..-.+-+.+..-...+..+.+.+  .++|.|-+ +.-||. 
T Consensus       229 ~~e~a~~L~~agvdvivvD~a~g~~-~~v-l~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~--aGad~i~v-g~g~gs~  303 (486)
T PRK05567        229 NEERAEALVEAGVDVLVVDTAHGHS-EGV-LDRVREIKAKYPDVQIIAGNVATAEAARALIE--AGADAVKV-GIGPGSI  303 (486)
T ss_pred             hHHHHHHHHHhCCCEEEEECCCCcc-hhH-HHHHHHHHhhCCCCCEEEeccCCHHHHHHHHH--cCCCEEEE-CCCCCcc
Confidence            367788999999998877   3222 223 67888888864222222232344555555554  58999976 223441 


Q ss_pred             -CCcc---cchhHHHHHHHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           81 -GGQK---FMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        81 -~gq~---~~~~~~~ki~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                       .++.   +....+.-+.++++.  ..+++|.+||||+ ..++....++|||.+.+||+|.+.
T Consensus       304 ~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~  366 (486)
T PRK05567        304 CTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGT  366 (486)
T ss_pred             ccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccccc
Confidence             1121   111234444444442  2468999999999 799999999999999999999864

>cd04732 HisA HisA

Probab=98.19  E-value=1.5e-05  Score=61.89  Aligned_cols=82  Identities=16%  Similarity=0.312  Sum_probs=63.6

Q ss_pred             cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEE
Q 031554           50 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIV  128 (157)
Q Consensus        50 ~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV  128 (157)
                      ...+|++.++.|.+  .++|.+.+...+..+.++...   ++.++++++.. ++++.++|||+ ++.++++.++|||.++
T Consensus        27 ~~~dp~~~a~~~~~--~g~d~l~v~dl~~~~~~~~~~---~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vv  100 (234)
T cd04732          27 YSDDPVEVAKKWEE--AGAKWLHVVDLDGAKGGEPVN---LELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVI  100 (234)
T ss_pred             ECCCHHHHHHHHHH--cCCCEEEEECCCccccCCCCC---HHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence            35678888888875  478999888777665555544   44556666654 68999999999 6999999999999999


Q ss_pred             EcccccCCC
Q 031554          129 AGSSVFGAP  137 (157)
Q Consensus       129 ~GSai~~~~  137 (157)
                      +||+.+..+
T Consensus       101 igs~~l~dp  109 (234)
T cd04732         101 IGTAAVKNP  109 (234)
T ss_pred             ECchHHhCh
Confidence            999988643

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=98.19  E-value=7e-05  Score=59.47  Aligned_cols=123  Identities=23%  Similarity=0.263  Sum_probs=81.0

Q ss_pred             ChHHHHHHHHhCCCCEEEEcc-----cCC-----cchHHHHHHHHHHcCCceEEE--ecCC-------CCHHh-HHhhHh
Q 031554            4 NPLDYVEPLGKAGASGFTFHV-----EIS-----KDNWQELVQRIKSKGMRPGVA--LKPG-------TSVEE-VYPLVE   63 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~-----e~~-----~~~~~~~i~~ir~~g~~~gl~--l~~~-------t~~~~-~~~~~~   63 (157)
                      +|..-+..+..+|||+|=+-.     .+.     ... .+++++=++.|..+-+.  +++.       .+++. ++...+
T Consensus        91 d~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a-~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~  169 (254)
T PF03437_consen   91 DPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCA-GELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVE  169 (254)
T ss_pred             CCHHHHHHHHHhCCCEEEecCEEceecccCccccccH-HHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHH
Confidence            566667788889999997431     111     122 55666666667664442  3321       23443 333222


Q ss_pred             cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554           64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      . ...|.|++-+..-   |+.   ..+++++++|+..+ +++.+.+|+|.+|+.++.+. ||++|+||++=+.
T Consensus       170 ~-~~aDaviVtG~~T---G~~---~~~~~l~~vr~~~~-~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K~~  233 (254)
T PF03437_consen  170 R-GGADAVIVTGKAT---GEP---PDPEKLKRVREAVP-VPVLVGSGVTPENIAEYLSY-ADGAIVGSYFKKD  233 (254)
T ss_pred             h-cCCCEEEECCccc---CCC---CCHHHHHHHHhcCC-CCEEEecCCCHHHHHHHHHh-CCEEEEeeeeeeC
Confidence            2 6799998853332   333   45667888888776 99999999999999998764 9999999997643

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=98.18  E-value=7.6e-05  Score=57.54  Aligned_cols=117  Identities=15%  Similarity=0.201  Sum_probs=78.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeee--C
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVE--P   78 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~--p   78 (157)
                      +|+...+.+..+|.|+|-+|.+.   + .++++.+++.  +.++.-++..+. ..+.+.++.   ..+|++|+-+..  +
T Consensus        63 ~~~~i~~~~~~~~~d~vQLHG~e---~-~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~---~~~d~~LlDs~~~~~  135 (207)
T PRK13958         63 DLTTIEHILSNTSINTIQLHGTE---S-IDFIQEIKKKYSSIKIIKALPADENIIQNINKYK---GFVDLFIIDTPSVSY  135 (207)
T ss_pred             CHHHHHHHHHhCCCCEEEECCCC---C-HHHHHHHhhcCCCceEEEEecccHHHHHHHHHHH---hhCCEEEEcCCCCCC
Confidence            46667777778999999999863   3 4677888764  356555665532 223345555   568999998742  3


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH--cCCCEEEEccccc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS--AGANCIVAGSSVF  134 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~--~Gad~vV~GSai~  134 (157)
                      |..|+.|.-..+   +++    ...++...||||++|+.++..  .++.++=+-|.+=
T Consensus       136 GGtG~~~dw~~~---~~~----~~~p~iLAGGL~peNV~~a~~~~~~p~gVDvsSGVE  186 (207)
T PRK13958        136 GGTGQTYDWTIL---KHI----KDIPYLIAGGINSENIQTVEQLKLSHQGYDIASGIE  186 (207)
T ss_pred             CcCCcEeChHHh---hhc----cCCCEEEECCCCHHHHHHHHhcCCCCCEEEcccccC
Confidence            555777764443   332    134789999999999999764  4667776666653

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=98.15  E-value=0.00033  Score=57.48  Aligned_cols=129  Identities=17%  Similarity=0.177  Sum_probs=85.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCC--------cchHH---HHHHHHHHc-CCceEEEe-cCCCCHHhHHhhHhcCCCCCe
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEIS--------KDNWQ---ELVQRIKSK-GMRPGVAL-KPGTSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~--------~~~~~---~~i~~ir~~-g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~   70 (157)
                      ++..+.+.....+||.+.+|....        +....   +.++.+++. .+-+.+=. ...++.+.++.+.+  .++|.
T Consensus       128 ~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~--~Gvd~  205 (326)
T cd02811         128 GVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLAD--AGVKA  205 (326)
T ss_pred             CHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHH--cCCCE
Confidence            455566666667999999997431        11213   567777775 55555533 33467777777766  58999


Q ss_pred             EEEEeeeCCCC-------Cccc------------chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           71 VLVMTVEPGFG-------GQKF------------MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        71 vl~m~v~pG~~-------gq~~------------~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      |.+-+. -|+.       -+.+            ...+...+.++++..++++|.++|||+ ...+......|||.+-+|
T Consensus       206 I~vsG~-GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~  284 (326)
T cd02811         206 IDVAGA-GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMA  284 (326)
T ss_pred             EEECCC-CCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEc
Confidence            987432 1110       0111            112345667776665589999999998 699999999999999999


Q ss_pred             ccccC
Q 031554          131 SSVFG  135 (157)
Q Consensus       131 Sai~~  135 (157)
                      +++..
T Consensus       285 ~~~L~  289 (326)
T cd02811         285 GPFLK  289 (326)
T ss_pred             HHHHH
Confidence            97653

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)

Probab=98.14  E-value=3.8e-05  Score=62.46  Aligned_cols=99  Identities=17%  Similarity=0.241  Sum_probs=62.8

Q ss_pred             HHHHHHHHHc----CCceEEEecCCCCHHhHHhhHhc----CCCCCeEEEEee--eCCCCCcccchhHHHHHHHHHhh-C
Q 031554           32 QELVQRIKSK----GMRPGVALKPGTSVEEVYPLVEG----ANPVEMVLVMTV--EPGFGGQKFMPEMMDKVRSLRNR-Y  100 (157)
Q Consensus        32 ~~~i~~ir~~----g~~~gl~l~~~t~~~~~~~~~~~----~~~~d~vl~m~v--~pG~~gq~~~~~~~~ki~~l~~~-~  100 (157)
                      .+.++.+|++    +...-+.+..+| ++.+.+.+++    +.++|.|++-..  .|.-..+  .++.+   +++.+. .
T Consensus       187 ~~av~~~r~~~~~~~~~~kIeVEv~t-leea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~--~~e~l---~~av~~~~  260 (308)
T PLN02716        187 TNAVQSADKYLEEKGLSMKIEVETRT-LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDV--DVSML---KEAVELIN  260 (308)
T ss_pred             HHHHHHHHHhhhhcCCCeeEEEEECC-HHHHHHHHHhcccccCCCCEEEeCCCcccccccCC--CHHHH---HHHHHhhC
Confidence            6788888872    222234444345 6666666640    126999998543  2321111  23333   333332 2


Q ss_pred             CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          101 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       101 ~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ..+++++-||||.+|+.++.+.|+|.+++|+...++
T Consensus       261 ~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galthsa  296 (308)
T PLN02716        261 GRFETEASGNVTLDTVHKIGQTGVTYISSGALTHSV  296 (308)
T ss_pred             CCceEEEECCCCHHHHHHHHHcCCCEEEeCccccCC
Confidence            346799999999999999999999999999866643

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=98.14  E-value=8.1e-05  Score=58.84  Aligned_cols=113  Identities=13%  Similarity=0.124  Sum_probs=76.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchH-----HHHHHHHHHcCCceEE--Eec-CCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNW-----QELVQRIKSKGMRPGV--ALK-PGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~-----~~~i~~ir~~g~~~gl--~l~-~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      .-++.+.+.|+|.+.|..-..+..+     .++++.++  ++.+-+  ++. ..++.+.++.++++  ++|.||--    
T Consensus        77 ~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~~l--G~~rILTS----  148 (248)
T PRK11572         77 EDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLADL--GVARILTS----  148 (248)
T ss_pred             HHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHHHc--CCCEEECC----
Confidence            3477889999999999976555322     33344432  333222  332 23566777777765  68888742    


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                        ||+.-..+.++.++++.+...+..|.+.||||.+|++++.+.|+.-|=.
T Consensus       149 --Gg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~tG~~~~H~  197 (248)
T PRK11572        149 --GQQQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLDAGVREVHS  197 (248)
T ss_pred             --CCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEee
Confidence              3333355678888888776656569999999999999999999987743

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.13  E-value=2e-05  Score=61.84  Aligned_cols=82  Identities=22%  Similarity=0.290  Sum_probs=62.5

Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .+|++.++.|.+. .++|.+.+.-.+-...++.   ..++-|+++.+. .+.+|+++|||+ .+.++.+.++||+-+|+|
T Consensus        31 ~dp~~~a~~~~~~-~Ga~~l~ivDLd~a~~~~~---~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvig  105 (234)
T PRK13587         31 RSAEESIAYYSQF-ECVNRIHIVDLIGAKAQHA---REFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVG  105 (234)
T ss_pred             CCHHHHHHHHHhc-cCCCEEEEEECcccccCCc---chHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEEC
Confidence            5788888888742 3589999887764444544   345556666664 368999999999 699999999999999999


Q ss_pred             ccccCCCC
Q 031554          131 SSVFGAPE  138 (157)
Q Consensus       131 Sai~~~~d  138 (157)
                      |+.++.++
T Consensus       106 t~a~~~~~  113 (234)
T PRK13587        106 TKGIQDTD  113 (234)
T ss_pred             chHhcCHH
Confidence            99887544

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=98.13  E-value=9.9e-05  Score=61.15  Aligned_cols=124  Identities=23%  Similarity=0.280  Sum_probs=79.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccC--CcchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554            6 LDYVEPLGKAGASGFTFHVEI--SKDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-   81 (157)
                      .+.++.+.++|+|++.+..-.  ..+. .+.++++|+.--++-+.. |..|. +..+.+++  .++|.|-+ ++=||.- 
T Consensus       110 ~er~~~L~~agvD~ivID~a~g~s~~~-~~~ik~ik~~~~~~~viaGNV~T~-e~a~~L~~--aGad~vkV-GiGpGsiC  184 (352)
T PF00478_consen  110 FERAEALVEAGVDVIVIDSAHGHSEHV-IDMIKKIKKKFPDVPVIAGNVVTY-EGAKDLID--AGADAVKV-GIGPGSIC  184 (352)
T ss_dssp             HHHHHHHHHTT-SEEEEE-SSTTSHHH-HHHHHHHHHHSTTSEEEEEEE-SH-HHHHHHHH--TT-SEEEE-SSSSSTTB
T ss_pred             HHHHHHHHHcCCCEEEccccCccHHHH-HHHHHHHHHhCCCceEEecccCCH-HHHHHHHH--cCCCEEEE-eccCCccc
Confidence            567888999999999995321  1233 678888888644444433 44444 44555655  68999977 3445422 


Q ss_pred             --------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           82 --------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        82 --------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                              |.+ +-..+-.+.+.++. .+++|.+||||+ ..++-..+.+|||.+-+||.+-+.
T Consensus       185 tTr~v~GvG~P-Q~tAv~~~a~~a~~-~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt  246 (352)
T PF00478_consen  185 TTREVTGVGVP-QLTAVYECAEAARD-YGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGT  246 (352)
T ss_dssp             HHHHHHSBSCT-HHHHHHHHHHHHHC-TTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTB
T ss_pred             ccccccccCCc-HHHHHHHHHHHhhh-ccCceeecCCcCcccceeeeeeecccceeechhhccC
Confidence                    222 11344455555554 379999999999 699999999999999999988754

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=98.12  E-value=0.00011  Score=56.71  Aligned_cols=127  Identities=20%  Similarity=0.225  Sum_probs=86.6

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC--CC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG--FG   81 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG--~~   81 (157)
                      ||. .++++.++||+++.-+.-   +  .++++.++++|+-+.--+  .||-|....+-   .+.+.+=+.   |+  ++
T Consensus        74 ~~~-q~~~a~~aGa~fiVsP~~---~--~ev~~~a~~~~ip~~PG~--~TptEi~~Ale---~G~~~lK~F---Pa~~~G  139 (211)
T COG0800          74 NPE-QARQAIAAGAQFIVSPGL---N--PEVAKAANRYGIPYIPGV--ATPTEIMAALE---LGASALKFF---PAEVVG  139 (211)
T ss_pred             CHH-HHHHHHHcCCCEEECCCC---C--HHHHHHHHhCCCcccCCC--CCHHHHHHHHH---cChhheeec---CccccC
Confidence            455 567889999998876532   2  588999999887544333  35655555554   466666443   54  22


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHHHH
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKSVE  151 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~  151 (157)
                      |       ..-++.++.-.+++++...|||+.+|++.+..+|+.++=+||.++..     +|+.+..+..++.++
T Consensus       140 g-------~~~~ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~~~~~~~~~~~i~~~a~~~~~  207 (211)
T COG0800         140 G-------PAMLKALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPKDLIAAGDWDRITELAREAVA  207 (211)
T ss_pred             c-------HHHHHHHcCCCCCCeEeecCCCCHHHHHHHHhCCceEEecCccccChhhhhcccHHHHHHHHHHHHH
Confidence            2       22345555566889999999999999999999998877778998853     466555555555443

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=98.12  E-value=0.00033  Score=57.15  Aligned_cols=130  Identities=15%  Similarity=0.259  Sum_probs=85.6

Q ss_pred             cChHHHHHHH---HhCCCCEEEEcccCCc----------------chHHHHHHHHHHc-CCceEEEecCC---C---CHH
Q 031554            3 TNPLDYVEPL---GKAGASGFTFHVEISK----------------DNWQELVQRIKSK-GMRPGVALKPG---T---SVE   56 (157)
Q Consensus         3 ~~p~~~i~~~---~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~-g~~~gl~l~~~---t---~~~   56 (157)
                      .+|+.+.+.+   .++|+|.|-+|.-.+.                +.+.++++.+|+. ++.+.+-+...   +   ..+
T Consensus        72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~  151 (319)
T TIGR00737        72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVE  151 (319)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHH
Confidence            4676666544   5689999999864331                1225677777764 55555555321   1   223


Q ss_pred             hHHhhHhcCCCCCeEEEEeeeC--CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH-HcCCCEEEEccc
Q 031554           57 EVYPLVEGANPVEMVLVMTVEP--GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-SAGANCIVAGSS  132 (157)
Q Consensus        57 ~~~~~~~~~~~~d~vl~m~v~p--G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~-~~Gad~vV~GSa  132 (157)
                      .++.+.+  .++|.|.+.+..+  |+.+    +..++.++++++.. +++|.+-|||+ .+++.++. ..|||++.+|++
T Consensus       152 ~a~~l~~--~G~d~i~vh~r~~~~~~~~----~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~  224 (319)
T TIGR00737       152 AARIAED--AGAQAVTLHGRTRAQGYSG----EANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRG  224 (319)
T ss_pred             HHHHHHH--hCCCEEEEEcccccccCCC----chhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChh
Confidence            3333332  4789997754322  2222    34577788888764 58999999998 79999887 689999999999


Q ss_pred             ccCCCCH
Q 031554          133 VFGAPEP  139 (157)
Q Consensus       133 i~~~~d~  139 (157)
                      ++..+..
T Consensus       225 ~l~~P~l  231 (319)
T TIGR00737       225 ALGNPWL  231 (319)
T ss_pred             hhhCChH
Confidence            8876554

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=98.12  E-value=1.8e-05  Score=64.10  Aligned_cols=89  Identities=17%  Similarity=0.207  Sum_probs=61.5

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL  111 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI  111 (157)
                      .+.++.+|++....-+.+..+| ++.+.+.++  .++|.|++-.         |.++.++++-++.  ..++.+++-|||
T Consensus       196 ~~av~~~r~~~~~~kIeVEv~s-leea~ea~~--~gaDiI~LDn---------~s~e~~~~av~~~--~~~~~ieaSGGI  261 (296)
T PRK09016        196 RQAVEKAFWLHPDVPVEVEVEN-LDELDQALK--AGADIIMLDN---------FTTEQMREAVKRT--NGRALLEVSGNV  261 (296)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCC-HHHHHHHHH--cCCCEEEeCC---------CChHHHHHHHHhh--cCCeEEEEECCC
Confidence            6777777776322225555566 666666665  5899998842         3344444433221  246889999999


Q ss_pred             CHhhHHHHHHcCCCEEEEccccc
Q 031554          112 GPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      |++|++++.+.|+|.+++|+..-
T Consensus       262 ~~~ni~~yA~tGVD~Is~galth  284 (296)
T PRK09016        262 TLETLREFAETGVDFISVGALTK  284 (296)
T ss_pred             CHHHHHHHHhcCCCEEEeCcccc
Confidence            99999999999999999998443

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.11  E-value=2.7e-05  Score=62.69  Aligned_cols=89  Identities=19%  Similarity=0.309  Sum_probs=61.9

Q ss_pred             HHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE
Q 031554           32 QELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd  108 (157)
                      .+.++.+|++.   .++-+.+  + .++.+.+.++  .++|.|++-.         |.++.+++.-++.+  ...++++-
T Consensus       181 ~~ai~~~r~~~~~~~kIeVEv--~-tleea~ea~~--~gaDiI~LDn---------~s~e~l~~av~~~~--~~~~leaS  244 (281)
T PRK06106        181 REAIRRARAGVGHLVKIEVEV--D-TLDQLEEALE--LGVDAVLLDN---------MTPDTLREAVAIVA--GRAITEAS  244 (281)
T ss_pred             HHHHHHHHHhCCCCCcEEEEe--C-CHHHHHHHHH--cCCCEEEeCC---------CCHHHHHHHHHHhC--CCceEEEE
Confidence            67888888873   3444444  4 4445555554  6899998842         33444444333222  34669999


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ||||++|++++.+.|+|.+++|+...++
T Consensus       245 GGI~~~ni~~yA~tGVD~Is~Galthsa  272 (281)
T PRK06106        245 GRITPETAPAIAASGVDLISVGWLTHSA  272 (281)
T ss_pred             CCCCHHHHHHHHhcCCCEEEeChhhcCC
Confidence            9999999999999999999999976644

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.09  E-value=2.6e-05  Score=60.95  Aligned_cols=80  Identities=16%  Similarity=0.391  Sum_probs=61.9

Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .+|++.++.+.+  .++|++.+...+....+..   ...+.|+++.+.. +.++.++|||+ .+++..+.++|||.+++|
T Consensus        32 ~~~~e~a~~~~~--~G~~~l~i~dl~~~~~~~~---~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iG  105 (241)
T PRK13585         32 GDPVEVAKRWVD--AGAETLHLVDLDGAFEGER---KNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILG  105 (241)
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEechhhhcCCc---ccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence            578888888876  5789998876654333322   3456777777764 68999999999 799999999999999999


Q ss_pred             ccccCCC
Q 031554          131 SSVFGAP  137 (157)
Q Consensus       131 Sai~~~~  137 (157)
                      |..++.+
T Consensus       106 s~~~~~~  112 (241)
T PRK13585        106 TAAVENP  112 (241)
T ss_pred             hHHhhCh
Confidence            9998644

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=98.09  E-value=0.00016  Score=56.64  Aligned_cols=138  Identities=20%  Similarity=0.239  Sum_probs=86.0

Q ss_pred             HHHHHHhC-CCCEEEEcccCC-----cchHHHHHHHHH---HcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            8 YVEPLGKA-GASGFTFHVEIS-----KDNWQELVQRIK---SKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         8 ~i~~~~~~-gad~v~vh~e~~-----~~~~~~~i~~ir---~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      ..+++.|+ |-|||-+-.-..     +++ .+++++.+   +-|+.+---++  .+.-..+++.+  -++..|.-++..-
T Consensus        81 ~A~laRe~~~t~wIKLEVi~D~~~L~PD~-~etl~Aae~Lv~eGF~VlPY~~--~D~v~akrL~d--~GcaavMPlgsPI  155 (247)
T PF05690_consen   81 TARLAREAFGTNWIKLEVIGDDKTLLPDP-IETLKAAEILVKEGFVVLPYCT--DDPVLAKRLED--AGCAAVMPLGSPI  155 (247)
T ss_dssp             HHHHHHHTTS-SEEEE--BS-TTT--B-H-HHHHHHHHHHHHTT-EEEEEE---S-HHHHHHHHH--TT-SEBEEBSSST
T ss_pred             HHHHHHHHcCCCeEEEEEeCCCCCcCCCh-hHHHHHHHHHHHCCCEEeecCC--CCHHHHHHHHH--CCCCEEEeccccc
Confidence            33444554 778887653322     234 56666554   45776655554  33444555555  3777887777666


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      |.+-.-..+.   .|+.+++.. ++++.||+||. +.++.+.-+.|+|.+-+-|+|..+.||....+.++..++-.|
T Consensus       156 GSg~Gi~n~~---~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AGR  228 (247)
T PF05690_consen  156 GSGRGIQNPY---NLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEAGR  228 (247)
T ss_dssp             TT---SSTHH---HHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             ccCcCCCCHH---HHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence            6443333344   455566654 89999999998 799999999999999999999999999999999998776433

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.08  E-value=5.4e-05  Score=60.92  Aligned_cols=91  Identities=15%  Similarity=0.297  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE
Q 031554           31 WQELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV  107 (157)
Q Consensus        31 ~~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v  107 (157)
                      +.+.++.+|++.   .++-+.+  + +++.+.+.++  .++|.|++-         +|.++.+++.-++.+  ....+++
T Consensus       179 i~~av~~~r~~~~~~~kIeVEv--~-slee~~ea~~--~gaDiImLD---------n~s~e~l~~av~~~~--~~~~lea  242 (281)
T PRK06543        179 LTEALRHVRAQLGHTTHVEVEV--D-RLDQIEPVLA--AGVDTIMLD---------NFSLDDLREGVELVD--GRAIVEA  242 (281)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEe--C-CHHHHHHHHh--cCCCEEEEC---------CCCHHHHHHHHHHhC--CCeEEEE
Confidence            367888888863   3444444  4 4445555443  689999883         245555555333222  2468999


Q ss_pred             EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      -||||.+|++++.+.|+|.+++|+-..+.+
T Consensus       243 SGgI~~~ni~~yA~tGVD~Is~galths~~  272 (281)
T PRK06543        243 SGNVNLNTVGAIASTGVDVISVGALTHSVR  272 (281)
T ss_pred             ECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence            999999999999999999999999666543

>PRK14565 triosephosphate isomerase; Provisional

Probab=98.06  E-value=0.00019  Score=56.51  Aligned_cols=132  Identities=14%  Similarity=0.205  Sum_probs=84.3

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCCe
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVEM   70 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d~   70 (157)
                      .+++.++|++++.+.        .|. ++.+.+-++.+.++|+.+.+-+.  ...+         .+...++. ....+-
T Consensus        78 ~~mLkd~G~~~viiGHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG--E~~e~r~~~~~~~~~~~Ql~~~l~~~~~  154 (237)
T PRK14565         78 AKMLKECGCSYVILGHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG--ETLEDRENGMTKDVLLEQCSNCLPKHGE  154 (237)
T ss_pred             HHHHHHcCCCEEEECcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC--CCHHHHHccChHHHHHHHHHHHhcCCCC
Confidence            468899999999986        232 22224444788889999888775  2222         11111110 022221


Q ss_pred             EEEEeeeC----CCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccCCCCHHHHHH
Q 031554           71 VLVMTVEP----GFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus        71 vl~m~v~p----G~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~~~d~~~~~~  144 (157)
                       ++..-+|    | +|+.-.++..++ .+.+|+...+.+|...|+++++|+.++.+. ++|++-+|++..+.+++..-++
T Consensus       155 -ivIAYEPvWAIG-tG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~  232 (237)
T PRK14565        155 -FIIAYEPVWAIG-GSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQ  232 (237)
T ss_pred             -EEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHH
Confidence             2334466    5 355555554443 455566556789999999999999998665 9999999999887666655554


Q ss_pred             H
Q 031554          145 L  145 (157)
Q Consensus       145 ~  145 (157)
                      .
T Consensus       233 ~  233 (237)
T PRK14565        233 Q  233 (237)
T ss_pred             H
Confidence            4

>PRK14567 triosephosphate isomerase; Provisional

Probab=98.05  E-value=0.00024  Score=56.45  Aligned_cols=134  Identities=16%  Similarity=0.184  Sum_probs=83.1

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCH--------HhHHhhHhc-CCCCCe-
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSV--------EEVYPLVEG-ANPVEM-   70 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~--------~~~~~~~~~-~~~~d~-   70 (157)
                      .+++.+.|++++.+.        .|. ++.+..-++.+.++|+.+.+-+. +|..        +.+...++. +..++. 
T Consensus        78 ~~mLkd~G~~yviiGHSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG-Et~eere~g~~~~vv~~Ql~~~l~~i~~~  155 (253)
T PRK14567         78 ARMLEDIGCDYLLIGHSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG-ESLDDRQSGKLKQVLATQLSLILENLSVE  155 (253)
T ss_pred             HHHHHHcCCCEEEECcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC-CcHHHHHcCCHHHHHHHHHHHHHccCCHH
Confidence            468899999999986        343 23336777788889999888775 2221        122222210 022221 


Q ss_pred             ---EEEEeeeC----CCCCcccchhHHHH-HHHHHhh--------CCCCcEEEEcCCCHhhHHHHHHcC-CCEEEEcccc
Q 031554           71 ---VLVMTVEP----GFGGQKFMPEMMDK-VRSLRNR--------YPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSV  133 (157)
Q Consensus        71 ---vl~m~v~p----G~~gq~~~~~~~~k-i~~l~~~--------~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~GSai  133 (157)
                         =++..-+|    |+ |+.-.++..++ .+.+|+.        ..+++|...|+++++|+.++.+.+ +|++-+|++.
T Consensus       156 ~~~~ivIAYEPvWAIGT-G~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgas  234 (253)
T PRK14567        156 QLAKVVIAYEPVWAIGT-GVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGAS  234 (253)
T ss_pred             HhCCEEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhh
Confidence               02233456    43 44334433322 3333331        246899999999999999998888 9999999998


Q ss_pred             cCCCCHHHHHHH
Q 031554          134 FGAPEPAHVISL  145 (157)
Q Consensus       134 ~~~~d~~~~~~~  145 (157)
                      .+.+++.+-++.
T Consensus       235 L~~~~F~~Ii~~  246 (253)
T PRK14567        235 LKAAEFNEIINQ  246 (253)
T ss_pred             hcHHHHHHHHHH
Confidence            866666555544

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=98.04  E-value=0.00043  Score=58.52  Aligned_cols=128  Identities=18%  Similarity=0.234  Sum_probs=87.7

Q ss_pred             HHHHHHHhCCCCEEEEcccCC---------------cchHHHHHHHHHHc-CCceEEEecCCC-CHHhHHhhHhcCCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEIS---------------KDNWQELVQRIKSK-GMRPGVALKPGT-SVEEVYPLVEGANPVE   69 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~---------------~~~~~~~i~~ir~~-g~~~gl~l~~~t-~~~~~~~~~~~~~~~d   69 (157)
                      ++.+.+.+.|+|++.+-.-.+               .+.+.++++.+++. .+-+.+=|.|+. .+..+.+.++. .++|
T Consensus       117 ~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~-~Gad  195 (420)
T PRK08318        117 EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKR-GGAD  195 (420)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHH-CCCC
Confidence            345556778999999853221               12336777888775 344455577664 34344333333 5889


Q ss_pred             eEEE-------Eee-------eC---------CCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCC-HhhHHHHHHcC
Q 031554           70 MVLV-------MTV-------EP---------GFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLG-PSTIAEAASAG  123 (157)
Q Consensus        70 ~vl~-------m~v-------~p---------G~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~-~~~i~~~~~~G  123 (157)
                      .|.+       |.+       .|         |++|....|-.++.|+++++..  ++++|..-|||. .+++.++..+|
T Consensus       196 gi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG  275 (420)
T PRK08318        196 AVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLG  275 (420)
T ss_pred             EEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhC
Confidence            8884       221       11         3456666666789999998875  379999999998 79999999999


Q ss_pred             CCEEEEcccccC
Q 031554          124 ANCIVAGSSVFG  135 (157)
Q Consensus       124 ad~vV~GSai~~  135 (157)
                      ||.|=+||+++.
T Consensus       276 A~~Vqi~ta~~~  287 (420)
T PRK08318        276 AGTVQVCTAAMQ  287 (420)
T ss_pred             CChheeeeeecc
Confidence            999999999875

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=98.03  E-value=5.1e-05  Score=60.07  Aligned_cols=82  Identities=20%  Similarity=0.327  Sum_probs=63.1

Q ss_pred             CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554           51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA  129 (157)
Q Consensus        51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~  129 (157)
                      ..+|++.++.+.+  .++|.+.+.-+.....++.   ..++-++++++.. ++++.++|||+ .+.+..+..+||+.+++
T Consensus        29 ~~dp~~~a~~~~~--~G~~~l~v~Dl~~~~~~~~---~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~viv  102 (254)
T TIGR00735        29 AGDPVELAQRYDE--EGADELVFLDITASSEGRT---TMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSI  102 (254)
T ss_pred             CCCHHHHHHHHHH--cCCCEEEEEcCCcccccCh---hhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence            3467777777765  4789998887775433322   4566677777664 68999999999 89999999999999999


Q ss_pred             cccccCCCC
Q 031554          130 GSSVFGAPE  138 (157)
Q Consensus       130 GSai~~~~d  138 (157)
                      ||+.+..++
T Consensus       103 gt~~~~~p~  111 (254)
T TIGR00735       103 NTAAVKNPE  111 (254)
T ss_pred             ChhHhhChH
Confidence            999997544

>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate

Probab=98.03  E-value=0.00012  Score=57.87  Aligned_cols=126  Identities=23%  Similarity=0.307  Sum_probs=79.8

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCCe
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVEM   70 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d~   70 (157)
                      .+++.++|+++|.+.        .|+.+ .+..-++.+.++|+.+.+-+.  .+.+         .+...++. +..++.
T Consensus        77 ~~mL~d~G~~~viiGHSERR~~f~Et~~-~i~~Kv~~a~~~gl~pIvCiG--E~~~~r~~~~~~~~~~~Ql~~~l~~~~~  153 (242)
T cd00311          77 AEMLKDAGAKYVIIGHSERRQYFGETDE-DVAKKVKAALEAGLTPILCVG--ETLEEREAGKTEEVVAAQLAAVLAGVED  153 (242)
T ss_pred             HHHHHHcCCCEEEeCcccccCcCCCCcH-HHHHHHHHHHHCCCEEEEEeC--CCHHHHHcCCHHHHHHHHHHHHHhcchh
Confidence            468899999999997        25433 447788889999999887774  3331         22233211 022110


Q ss_pred             --EEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC----CCCcEEEEcCCCHhhHHHHHHcC-CCEEEEccccc
Q 031554           71 --VLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY----PSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVF  134 (157)
Q Consensus        71 --vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~----~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~GSai~  134 (157)
                        =+++.-+|    |+ |..-.++ .-+-++.+|+    .+    .+++|...|+|+++|+.++.+.+ +|++-+||+..
T Consensus       154 ~~~~iIAYEPvWAIGt-G~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl  232 (242)
T cd00311         154 LAPVVIAYEPVWAIGT-GKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASL  232 (242)
T ss_pred             hcCeEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhh
Confidence              02233356    54 3433333 3333333443    22    36899999999999999999999 99999999987


Q ss_pred             CCCC
Q 031554          135 GAPE  138 (157)
Q Consensus       135 ~~~d  138 (157)
                      +.++
T Consensus       233 ~~~~  236 (242)
T cd00311         233 KAES  236 (242)
T ss_pred             CHHH
Confidence            5443

The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=98.03  E-value=4.3e-05  Score=59.29  Aligned_cols=81  Identities=12%  Similarity=0.309  Sum_probs=62.4

Q ss_pred             CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554           51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA  129 (157)
Q Consensus        51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~  129 (157)
                      ..+|.+.++.|.+  .++|.+.+...+.-+.|+.   ..++.++++++. .+.++.++|||+ .+++.++.++|||.+++
T Consensus        29 ~~~~~~~a~~~~~--~g~~~i~v~dld~~~~g~~---~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vil  102 (233)
T PRK00748         29 SDDPVAQAKAWED--QGAKWLHLVDLDGAKAGKP---VNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVII  102 (233)
T ss_pred             cCCHHHHHHHHHH--cCCCEEEEEeCCccccCCc---ccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence            3577787887764  4789999988753334432   346667777666 368999999999 69999999999999999


Q ss_pred             cccccCCC
Q 031554          130 GSSVFGAP  137 (157)
Q Consensus       130 GSai~~~~  137 (157)
                      |++++..+
T Consensus       103 g~~~l~~~  110 (233)
T PRK00748        103 GTAAVKNP  110 (233)
T ss_pred             CchHHhCH
Confidence            99999644

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=98.02  E-value=2.1e-05  Score=61.39  Aligned_cols=86  Identities=19%  Similarity=0.349  Sum_probs=64.2

Q ss_pred             EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCE
Q 031554           48 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANC  126 (157)
Q Consensus        48 ~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~  126 (157)
                      .....+|++.++.|.+  .++|.+.+.-.+....|   .+..++-|+++.+.. ..+++++|||+ .+.+..+.++||+-
T Consensus        25 ~~~~~dP~~~a~~~~~--~g~~~l~ivDLdaa~~g---~~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~   98 (229)
T PF00977_consen   25 TVYSGDPVEVAKAFNE--QGADELHIVDLDAAKEG---RGSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADR   98 (229)
T ss_dssp             ECECCCHHHHHHHHHH--TT-SEEEEEEHHHHCCT---HHHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SE
T ss_pred             eEECcCHHHHHHHHHH--cCCCEEEEEEccCcccC---chhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCE
Confidence            3455788998888854  58899988776643333   235667778887775 49999999999 68899999999999


Q ss_pred             EEEcccccCCCCH
Q 031554          127 IVAGSSVFGAPEP  139 (157)
Q Consensus       127 vV~GSai~~~~d~  139 (157)
                      +|+||+.|+.++.
T Consensus        99 Vvigt~~~~~~~~  111 (229)
T PF00977_consen   99 VVIGTEALEDPEL  111 (229)
T ss_dssp             EEESHHHHHCCHH
T ss_pred             EEeChHHhhchhH
Confidence            9999999875544

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=98.02  E-value=0.00018  Score=59.64  Aligned_cols=114  Identities=18%  Similarity=0.354  Sum_probs=80.2

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc----------CCceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEee
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK----------GMRPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~----------g~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      ....+++.|.=.| +|.+.+.+.-.+.++.++++          ...++.++.+.. ..+.+..+++  .++|++.+-+.
T Consensus        53 mAiama~~Gglgv-ih~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~--agvD~ivID~a  129 (352)
T PF00478_consen   53 MAIAMARLGGLGV-IHRNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVE--AGVDVIVIDSA  129 (352)
T ss_dssp             HHHHHHHTTSEEE-EESSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHH--TT-SEEEEE-S
T ss_pred             HHHHHHHhcCCce-ecCCCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHH--cCCCEEEcccc
Confidence            4455667776444 67665432214566666542          567888998775 5677888876  58999988655


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      + |     ..+..++.++++|+.+|+++|.+..=.|.+.+..|.++|||++-+|
T Consensus       130 ~-g-----~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVG  177 (352)
T PF00478_consen  130 H-G-----HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVG  177 (352)
T ss_dssp             S-T-----TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred             C-c-----cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEe
Confidence            5 3     3446778899999999989987666677999999999999999999

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=98.02  E-value=4.8e-05  Score=60.60  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=58.4

Q ss_pred             CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      ..+|++.++.|.+  .++.++=+.-..+   |..   ...+-|+++++  .+.+|.+.|||+.++++.+.++|||-+|+|
T Consensus        42 ~~dP~~~A~~~~~--~Ga~~lHvVDLdg---g~~---~n~~~i~~i~~--~~~~vqvGGGIR~e~i~~~l~~Ga~rViig  111 (262)
T PLN02446         42 DKSAAEFAEMYKR--DGLTGGHVIMLGA---DDA---SLAAALEALRA--YPGGLQVGGGVNSENAMSYLDAGASHVIVT  111 (262)
T ss_pred             CCCHHHHHHHHHH--CCCCEEEEEECCC---CCc---ccHHHHHHHHh--CCCCEEEeCCccHHHHHHHHHcCCCEEEEc
Confidence            3789999998886  3666665554443   222   23556666766  358999999999999999999999999999


Q ss_pred             ccccCC
Q 031554          131 SSVFGA  136 (157)
Q Consensus       131 Sai~~~  136 (157)
                      |+.|+.
T Consensus       112 T~Av~~  117 (262)
T PLN02446        112 SYVFRD  117 (262)
T ss_pred             hHHHhC
Confidence            999874

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=98.00  E-value=0.0002  Score=61.33  Aligned_cols=130  Identities=13%  Similarity=0.154  Sum_probs=92.7

Q ss_pred             HHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      .+.+...+|||.|.+-....+. .+.++++.+++.|+.+-+.++....++.   .++  .+.+.|-   ++- ..=..|.
T Consensus       124 QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~---al~--~~a~iiG---iNn-RdL~t~~  194 (454)
T PRK09427        124 QIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELER---AIA--LGAKVIG---INN-RNLRDLS  194 (454)
T ss_pred             HHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHH---HHh--CCCCEEE---EeC-CCCccce
Confidence            5667788999999999877764 4488999999999999999964444433   332  4667664   341 1111111


Q ss_pred             hhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                       -.++.-.++..+.| ++.+..-+||+ ++++..+.. |+|+|.+|+++.+++||.+++++|..
T Consensus       195 -vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~~  256 (454)
T PRK09427        195 -IDLNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAEDDLELAVRKLIL  256 (454)
T ss_pred             -ECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCHHHHHHHHhc
Confidence             22444455555554 45667789999 699998865 79999999999999999999988854

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.99  E-value=0.00039  Score=59.88  Aligned_cols=132  Identities=20%  Similarity=0.267  Sum_probs=82.8

Q ss_pred             hHHHHHHHHhCCCCEEEEcccC-CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--
Q 031554            5 PLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG--   81 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~--   81 (157)
                      -...++.+.++|+|.+.+-.-. ....+.+.++++|+.-..+-+....--..+..+.+.+  .++|.|-+ ++-||.-  
T Consensus       226 ~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~--~G~d~i~v-g~g~Gs~~t  302 (475)
T TIGR01303       226 VGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLE--AGANIIKV-GVGPGAMCT  302 (475)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHH--hCCCEEEE-CCcCCcccc
Confidence            3467788899999999885332 1123377888898863223333332334455555654  58999864 2333311  


Q ss_pred             -------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-CCHHH
Q 031554           82 -------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-PEPAH  141 (157)
Q Consensus        82 -------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-~d~~~  141 (157)
                             |.+.....++-.+.+++.  +++|.+||||+ ..++.....+|||.+.+||.+-+. +.|.+
T Consensus       303 tr~~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~  369 (475)
T TIGR01303       303 TRMMTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD  369 (475)
T ss_pred             CccccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCc
Confidence                   222222233333333433  78999999999 799999999999999999987653 34443

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.98  E-value=7.3e-05  Score=58.65  Aligned_cols=79  Identities=18%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .+|++.++.|.+  ..+|.+.+.-.+.-. ++.-   ..+-|+++.+... .+++++|||+ .++++.+.+.|||-+|+|
T Consensus        30 ~dP~~~a~~~~~--~ga~~lhivDLd~a~-~~~~---n~~~i~~i~~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~kvvig  102 (232)
T PRK13586         30 GNPIEIASKLYN--EGYTRIHVVDLDAAE-GVGN---NEMYIKEISKIGF-DWIQVGGGIRDIEKAKRLLSLDVNALVFS  102 (232)
T ss_pred             CCHHHHHHHHHH--CCCCEEEEEECCCcC-CCcc---hHHHHHHHHhhCC-CCEEEeCCcCCHHHHHHHHHCCCCEEEEC
Confidence            479998888875  478999888777433 4332   3455666666322 3899999999 599999999999999999


Q ss_pred             ccccCCC
Q 031554          131 SSVFGAP  137 (157)
Q Consensus       131 Sai~~~~  137 (157)
                      |..++.+
T Consensus       103 t~a~~~p  109 (232)
T PRK13586        103 TIVFTNF  109 (232)
T ss_pred             chhhCCH
Confidence            9988744

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=97.97  E-value=6.3e-05  Score=59.14  Aligned_cols=79  Identities=13%  Similarity=0.331  Sum_probs=62.0

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      +|++.++.|.+  .++|.+.+.-.+ +..|..   ..++-|+++.+.. ..+++++|||+ .+.++.+..+||+-+++||
T Consensus        33 dp~~~a~~~~~--~g~~~l~ivDLd-~~~g~~---~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs  105 (241)
T PRK14024         33 SPLDAALAWQR--DGAEWIHLVDLD-AAFGRG---SNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGT  105 (241)
T ss_pred             CHHHHHHHHHH--CCCCEEEEEecc-ccCCCC---ccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence            78888888875  578888888776 332322   3456677777764 68999999999 7999999999999999999


Q ss_pred             cccCCCC
Q 031554          132 SVFGAPE  138 (157)
Q Consensus       132 ai~~~~d  138 (157)
                      +.++.++
T Consensus       106 ~~l~~p~  112 (241)
T PRK14024        106 AALENPE  112 (241)
T ss_pred             hHhCCHH
Confidence            9997544

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=97.97  E-value=0.00012  Score=58.14  Aligned_cols=134  Identities=19%  Similarity=0.264  Sum_probs=87.9

Q ss_pred             HHHHHHhCCCCEEEEcc----cCCcc---hHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc--CCCCC
Q 031554            8 YVEPLGKAGASGFTFHV----EISKD---NWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG--ANPVE   69 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~----e~~~~---~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~--~~~~d   69 (157)
                      .++.+...|||.|.+|.    |...+   .+.+..+.++++|+-..+.+.|-.+.-         .+....++  --+.|
T Consensus       102 ~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGAD  181 (265)
T COG1830         102 TVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGAD  181 (265)
T ss_pred             eHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCC
Confidence            46788899999999993    22222   125667778889997776554443321         11100000  02677


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-------hHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-------TIAEAASAGANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-------~i~~~~~~Gad~vV~GSai~~~~d~~~~  142 (157)
                      +|=.   .  +.|   .+   +..+++-+.++ +++.+.||=+.+       -...+.++||.++++|+-||+.++|...
T Consensus       182 IiK~---~--ytg---~~---e~F~~vv~~~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m  249 (265)
T COG1830         182 IIKT---K--YTG---DP---ESFRRVVAACG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAM  249 (265)
T ss_pred             eEee---c--CCC---Ch---HHHHHHHHhCC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHH
Confidence            7732   2  122   11   34455555666 999999998873       3345688999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 031554          143 ISLMRKSVEDA  153 (157)
Q Consensus       143 ~~~l~~~~~~~  153 (157)
                      ++.+..++.+.
T Consensus       250 ~~Ai~~Ivhe~  260 (265)
T COG1830         250 VKAIQAIVHEN  260 (265)
T ss_pred             HHHHHHHhcCC
Confidence            99888877553

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=97.96  E-value=0.00059  Score=56.17  Aligned_cols=133  Identities=20%  Similarity=0.322  Sum_probs=84.6

Q ss_pred             cChHHHHHHH---HhCCCCEEEEcccCCc----------------chHHHHHHHHHHc-CCceEEEe--cCC--CCH---
Q 031554            3 TNPLDYVEPL---GKAGASGFTFHVEISK----------------DNWQELVQRIKSK-GMRPGVAL--KPG--TSV---   55 (157)
Q Consensus         3 ~~p~~~i~~~---~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~-g~~~gl~l--~~~--t~~---   55 (157)
                      .+|+.|.+.+   .++|+|.|-+|.-.+.                +.+.++++.+++. +..+.+=+  ..+  ...   
T Consensus        74 ~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~  153 (333)
T PRK11815         74 SDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFL  153 (333)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHH
Confidence            5677776544   5679999999954331                1225778888774 44444422  211  112   


Q ss_pred             -HhHHhhHhcCCCCCeEEEEeeeC---CCCCc---ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           56 -EEVYPLVEGANPVEMVLVMTVEP---GFGGQ---KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        56 -~~~~~~~~~~~~~d~vl~m~v~p---G~~gq---~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                       +.++.+.+  .++|.+.+.+...   |+.+.   ...+..++.++++++..++++|..-|||+ .+++.++.+ |+|++
T Consensus       154 ~~~~~~l~~--aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgV  230 (333)
T PRK11815        154 CDFVDTVAE--AGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGV  230 (333)
T ss_pred             HHHHHHHHH--hCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEE
Confidence             22233322  4789997653321   22221   22334577788888876789999999997 799999886 79999


Q ss_pred             EEcccccCCCC
Q 031554          128 VAGSSVFGAPE  138 (157)
Q Consensus       128 V~GSai~~~~d  138 (157)
                      .+|++++..+.
T Consensus       231 mIGRa~l~nP~  241 (333)
T PRK11815        231 MIGRAAYHNPY  241 (333)
T ss_pred             EEcHHHHhCCH
Confidence            99999886553

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=97.96  E-value=0.00047  Score=61.11  Aligned_cols=122  Identities=18%  Similarity=0.139  Sum_probs=83.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC--CHHhHHhhHhcCCCCCeEEEEeeeC--C
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT--SVEEVYPLVEGANPVEMVLVMTVEP--G   79 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m~v~p--G   79 (157)
                      +|+...+.+.+.+.|.|-+|.+..+.. ...++.+++.++++.=++...+  .++.+.++.   +.+|++|+-+-.|  |
T Consensus        67 ~~~~i~~~~~~~~ld~vQLHG~e~~~~-~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~---~~~d~~LlDs~~~~~G  142 (610)
T PRK13803         67 SAKAMLKFSKKNGIDFVQLHGAESKAE-PAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYR---DHVKYFLFDNKTKIYG  142 (610)
T ss_pred             CHHHHHHHHHhcCCCEEEECCCCCccc-HHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhh---ccCCEEEEcCCCCCCC
Confidence            466677777889999999998754333 4778888877766655554433  355566666   6689999987554  4


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCC--EEEEcccccC
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGAN--CIVAGSSVFG  135 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad--~vV~GSai~~  135 (157)
                      ..|+.|.-..+   +.   .....++.+.|||+++|+.++++ ..+.  +|=+-|.+-.
T Consensus       143 GtG~~fdw~~~---~~---~~~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDvsSGvE~  195 (610)
T PRK13803        143 GSGKSFDWEKF---YN---YNFKFPFFLSGGLSPTNFDRIINLTHPQILGIDVSSGFED  195 (610)
T ss_pred             CCCCccChHHh---hh---cccCCcEEEEeCCCHHHHHHHHhhhCCCceEEEccCcccC
Confidence            45777764433   22   22245789999999999999876 4445  5656677763

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=97.95  E-value=0.00083  Score=52.71  Aligned_cols=125  Identities=14%  Similarity=0.147  Sum_probs=87.1

Q ss_pred             ChHHHHHHH--HhCCCCEEEEcccCC----------------cchHHHHHHHHHHcCCceEEEecCCCCH----HhHHhh
Q 031554            4 NPLDYVEPL--GKAGASGFTFHVEIS----------------KDNWQELVQRIKSKGMRPGVALKPGTSV----EEVYPL   61 (157)
Q Consensus         4 ~p~~~i~~~--~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~g~~~gl~l~~~t~~----~~~~~~   61 (157)
                      +|+.|++.+  .+.++|++-+-.-.+                .+.+.++++.+++.++.+.+=+.+..+.    +..+.+
T Consensus        78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l  157 (231)
T TIGR00736        78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNL  157 (231)
T ss_pred             CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHH
Confidence            567676554  445899988753321                1233778888887777777767765431    223333


Q ss_pred             HhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           62 VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        62 ~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      . - .++|.|.+-   .++.|..  ...++.|+++++..++++|..=|||+ .+++.++.++|||.+-+|+++++
T Consensus       158 ~-~-aGad~i~Vd---~~~~g~~--~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~  225 (231)
T TIGR00736       158 V-D-DGFDGIHVD---AMYPGKP--YADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK  225 (231)
T ss_pred             H-H-cCCCEEEEe---eCCCCCc--hhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence            3 2 689999664   4444431  24688899998876568999999999 69999999999999999998875

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK08227 autoinducer 2 aldolase; Validated

Probab=97.95  E-value=0.00023  Score=56.90  Aligned_cols=130  Identities=16%  Similarity=0.149  Sum_probs=84.1

Q ss_pred             HHHHHHhCCCCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEEecCCCC-----HHhHHhhHhc--CCCCCeEEE
Q 031554            8 YVEPLGKAGASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVALKPGTS-----VEEVYPLVEG--ANPVEMVLV   73 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~l~~~t~-----~~~~~~~~~~--~~~~d~vl~   73 (157)
                      -++.+...|||.|.+|...-.+       .+.++.++++++|+-+.. +.|.-+     .+.+....++  --+.|+|=+
T Consensus        99 sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~  177 (264)
T PRK08227         99 DMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKT  177 (264)
T ss_pred             cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEec
Confidence            3778999999999999533221       125566788889986444 544332     1111111110  016777732


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH------hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------STIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~------~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                         .+  .+     +.+++   +-+-+ .+++.+.||=+.      +.+....++||.++++|+-||+.+||.+.++.++
T Consensus       178 ---~y--~~-----~~f~~---vv~a~-~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~  243 (264)
T PRK08227        178 ---YY--VE-----EGFER---ITAGC-PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVH  243 (264)
T ss_pred             ---CC--CH-----HHHHH---HHHcC-CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHH
Confidence               22  11     23333   33333 578999999883      2344568899999999999999999999999999


Q ss_pred             HHHHH
Q 031554          148 KSVED  152 (157)
Q Consensus       148 ~~~~~  152 (157)
                      .++.+
T Consensus       244 ~IVh~  248 (264)
T PRK08227        244 AVVHE  248 (264)
T ss_pred             HHHhC
Confidence            88764

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=97.95  E-value=0.00037  Score=57.50  Aligned_cols=129  Identities=18%  Similarity=0.248  Sum_probs=84.1

Q ss_pred             HHHHHhCCCCEEEEcccC---------C---c-------------chHHHHHHHHHHc-CC-ceEEEecCCC--------
Q 031554            9 VEPLGKAGASGFTFHVEI---------S---K-------------DNWQELVQRIKSK-GM-RPGVALKPGT--------   53 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~---------~---~-------------~~~~~~i~~ir~~-g~-~~gl~l~~~t--------   53 (157)
                      ...+.++|+|+|-+|.-.         +   .             ..+.++++.+|+. |. .+|+=+++..        
T Consensus       158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~  237 (338)
T cd02933         158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDS  237 (338)
T ss_pred             HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCC
Confidence            345577899999999543         1   0             1225889999985 54 4676676542        


Q ss_pred             -CHHh---HHhhHhcCCCCCeEEEEeeeCC-CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEE
Q 031554           54 -SVEE---VYPLVEGANPVEMVLVMTVEPG-FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCI  127 (157)
Q Consensus        54 -~~~~---~~~~~~~~~~~d~vl~m~v~pG-~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~v  127 (157)
                       +.+.   +.+.++- .++|+|-+-   .| +..+. ....++..+++|+.. +++|.+-|||+++++.++++.| +|.|
T Consensus       238 ~~~ee~~~~~~~l~~-~g~d~i~vs---~g~~~~~~-~~~~~~~~~~ik~~~-~ipvi~~G~i~~~~a~~~l~~g~~D~V  311 (338)
T cd02933         238 DPEATFSYLAKELNK-RGLAYLHLV---EPRVAGNP-EDQPPDFLDFLRKAF-KGPLIAAGGYDAESAEAALADGKADLV  311 (338)
T ss_pred             CCHHHHHHHHHHHHH-cCCcEEEEe---cCCCCCcc-cccchHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHcCCCCEE
Confidence             2332   2233322 357888662   12 22222 223445566666653 6889999999999999998876 9999


Q ss_pred             EEcccccCCCCHHHHH
Q 031554          128 VAGSSVFGAPEPAHVI  143 (157)
Q Consensus       128 V~GSai~~~~d~~~~~  143 (157)
                      -+|+++...+++-..+
T Consensus       312 ~~gR~~ladP~~~~k~  327 (338)
T cd02933         312 AFGRPFIANPDLVERL  327 (338)
T ss_pred             EeCHhhhhCcCHHHHH
Confidence            9999999888764443

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.94  E-value=7.9e-05  Score=57.80  Aligned_cols=79  Identities=14%  Similarity=0.279  Sum_probs=61.0

Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      ..|.+.++.|.+  .+++.+.+...+.-+.|+.-   .++.++++++.. +.++.++|||+ .+.+..+.++|||.+|+|
T Consensus        28 ~dp~~~a~~~~~--~g~~~l~v~dl~~~~~g~~~---~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlg  101 (230)
T TIGR00007        28 DDPVEAAKKWEE--EGAERIHVVDLDGAKEGGPV---NLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRVIIG  101 (230)
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEeCCccccCCCC---cHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence            467888877754  46899988877754455442   345566666654 68999999999 699999999999999999


Q ss_pred             ccccCC
Q 031554          131 SSVFGA  136 (157)
Q Consensus       131 Sai~~~  136 (157)
                      |+.++.
T Consensus       102 s~~l~d  107 (230)
T TIGR00007       102 TAAVEN  107 (230)
T ss_pred             hHHhhC
Confidence            999864

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.94  E-value=0.00028  Score=60.88  Aligned_cols=125  Identities=19%  Similarity=0.197  Sum_probs=82.2

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeC-----
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEP-----   78 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-----   78 (157)
                      ...++.+.++|+|.|.+-.-.- ...+.++++++|+.--.+-+.. |..|..+...-+.   .++|.|-+ ++=|     
T Consensus       229 ~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~---aGad~v~v-gig~gsict  304 (479)
T PRK07807        229 AAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE---AGADIVKV-GVGPGAMCT  304 (479)
T ss_pred             HHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH---cCCCEEEE-CccCCcccc
Confidence            4677888999999988752211 2233788999998643444444 6667665444444   68999864 2223     


Q ss_pred             --CCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           79 --GFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        79 --G~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                        +..|... | .+.-+.++++.  ..++++.+||||+ +..+.....+|||.+++||.+-..
T Consensus       305 t~~~~~~~~-p-~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~  365 (479)
T PRK07807        305 TRMMTGVGR-P-QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGT  365 (479)
T ss_pred             cccccCCch-h-HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccC
Confidence              2222221 1 23333333332  2479999999999 799999999999999999988654

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=97.93  E-value=0.00094  Score=55.01  Aligned_cols=125  Identities=22%  Similarity=0.258  Sum_probs=82.4

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCc--------chH---HHHHHHHHHc-CCceEEEe-cCCCCHHhHHhhHhcCCCCCeE
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISK--------DNW---QELVQRIKSK-GMRPGVAL-KPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~--------~~~---~~~i~~ir~~-g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      +..+.+.....+||.+-+|.....        ...   .+.++.+++. ++.+++=. ...++.+.++.+.+  .++|.|
T Consensus       130 ~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~--aGvd~I  207 (333)
T TIGR02151       130 PEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLAD--AGVSAI  207 (333)
T ss_pred             HHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHH--cCCCEE
Confidence            334445555567888888864211        121   2678888886 66666533 33466777776665  489999


Q ss_pred             EEEeeeCCCCCccc--------------------chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           72 LVMTVEPGFGGQKF--------------------MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        72 l~m~v~pG~~gq~~--------------------~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .+-+    .+|..|                    .....+.+.++++...+++|.++|||+ ...+.++...|||.+-+|
T Consensus       208 ~Vsg----~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalGAd~V~ig  283 (333)
T TIGR02151       208 DVAG----AGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMA  283 (333)
T ss_pred             EECC----CCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhCCCeehhh
Confidence            8853    222211                    112344566666533579999999996 899999999999999999


Q ss_pred             ccccC
Q 031554          131 SSVFG  135 (157)
Q Consensus       131 Sai~~  135 (157)
                      ++++.
T Consensus       284 r~~L~  288 (333)
T TIGR02151       284 RPFLK  288 (333)
T ss_pred             HHHHH
Confidence            98773

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=97.93  E-value=0.00022  Score=59.09  Aligned_cols=131  Identities=15%  Similarity=0.226  Sum_probs=81.5

Q ss_pred             HHHHhCCCCEEEEcccC---------C------cc----------hHHHHHHHHHHc-C------CceEEEecCCCC---
Q 031554           10 EPLGKAGASGFTFHVEI---------S------KD----------NWQELVQRIKSK-G------MRPGVALKPGTS---   54 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---------~------~~----------~~~~~i~~ir~~-g------~~~gl~l~~~t~---   54 (157)
                      ..+.++|+|+|-+|.-.         +      |+          .+.++++.+|+. |      ..+|+=+++...   
T Consensus       151 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~  230 (353)
T cd04735         151 RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEP  230 (353)
T ss_pred             HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCC
Confidence            44577899999999521         1      10          125788888885 4      456777776432   


Q ss_pred             ---HHhHH---hhHhcCCCCCeEEEEeeeCCCCCcc--cchhHHHHHHHHHhhC-CCCcEEEEcCC-CHhhHHHHHHcCC
Q 031554           55 ---VEEVY---PLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRY-PSLDIEVDGGL-GPSTIAEAASAGA  124 (157)
Q Consensus        55 ---~~~~~---~~~~~~~~~d~vl~m~v~pG~~gq~--~~~~~~~ki~~l~~~~-~~~~I~vdGGI-~~~~i~~~~~~Ga  124 (157)
                         .+...   +.++- .++|+|-+-.-.  +....  ..+.....++.+++.. .+++|.+-||| +++++.++++.|+
T Consensus       231 g~~~ee~~~i~~~L~~-~GvD~I~Vs~g~--~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~ga  307 (353)
T cd04735         231 GIRMEDTLALVDKLAD-KGLDYLHISLWD--FDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGA  307 (353)
T ss_pred             CCCHHHHHHHHHHHHH-cCCCEEEeccCc--cccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCC
Confidence               23222   22222 368998664211  11111  1111233344455543 46889999999 5999999999999


Q ss_pred             CEEEEcccccCCCCHHHHH
Q 031554          125 NCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       125 d~vV~GSai~~~~d~~~~~  143 (157)
                      |.+.+|+++...+|+-..+
T Consensus       308 D~V~~gR~liadPdl~~k~  326 (353)
T cd04735         308 DLVAIGRGLLVDPDWVEKI  326 (353)
T ss_pred             ChHHHhHHHHhCccHHHHH
Confidence            9999999998878765443

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=97.92  E-value=0.00077  Score=55.31  Aligned_cols=125  Identities=20%  Similarity=0.213  Sum_probs=81.7

Q ss_pred             HHHHHHHhCC--CCEEEEcccCC-cchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554            7 DYVEPLGKAG--ASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-   81 (157)
Q Consensus         7 ~~i~~~~~~g--ad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-   81 (157)
                      +.+..+.++|  +|+|.+-.-.- ...+.+.++++|+.--.+-+.. |. ...+..+.+.+  .++|.|.+ ++.||.. 
T Consensus        97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV-~t~e~a~~l~~--aGad~I~V-~~G~G~~~  172 (321)
T TIGR01306        97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV-GTPEAVRELEN--AGADATKV-GIGPGKVC  172 (321)
T ss_pred             HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC-CCHHHHHHHHH--cCcCEEEE-CCCCCccc
Confidence            5677888988  79888754211 1223677888888643332322 33 35566666665  68999874 4455532 


Q ss_pred             ------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           82 ------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        82 ------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                            |..+..-.+.-|.++++.. +++|.+||||+ ..++.+.+.+|||.+-+||.+-+.
T Consensus       173 ~tr~~~g~g~~~~~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~  233 (321)
T TIGR01306       173 ITKIKTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGH  233 (321)
T ss_pred             cceeeeccCCCchHHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCc
Confidence                  1112111244566666653 68999999999 588989999999999999877653

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.91  E-value=7.3e-05  Score=58.45  Aligned_cols=75  Identities=24%  Similarity=0.464  Sum_probs=56.6

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      +|.+.++.|.   ..++.+.+...+-...|+.   ..++-++++.+. .+.++.++|||+ .+.+..+.+.|+|.+|+||
T Consensus        31 dp~~~a~~~~---~~~~~l~ivDldga~~g~~---~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGt  103 (228)
T PRK04128         31 DPVEIALRFS---EYVDKIHVVDLDGAFEGKP---KNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGT  103 (228)
T ss_pred             CHHHHHHHHH---HhCCEEEEEECcchhcCCc---chHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence            6888888887   4488888865552223432   234555666655 478999999999 6999999999999999999


Q ss_pred             ccc
Q 031554          132 SVF  134 (157)
Q Consensus       132 ai~  134 (157)
                      +.+
T Consensus       104 aa~  106 (228)
T PRK04128        104 KAF  106 (228)
T ss_pred             hhc
Confidence            988

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=97.90  E-value=0.00072  Score=57.94  Aligned_cols=115  Identities=19%  Similarity=0.234  Sum_probs=81.5

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      .+|....+.+.+++.|+|-+|..-   + .++++.+++.   ++++.=++...+... ..++    ..+|++++-+ .+|
T Consensus       316 ~~~~~i~~i~~~~~lD~vQLHG~e---~-~~~~~~l~~~~~~~~~iikai~v~~~~~-~~~~----~~~d~~LlDs-~~G  385 (454)
T PRK09427        316 ADIEDIVDIAKQLSLAAVQLHGDE---D-QAYIDALREALPKTCQIWKAISVGDTLP-ARDL----QHVDRYLLDN-GQG  385 (454)
T ss_pred             CCHHHHHHHHHHcCCCEEEeCCCC---C-HHHHHHHHhhcCCCCeEEEEeecCchhh-hhhh----cCCCEEEEcC-CCC
Confidence            356677777889999999999853   2 3667777763   355665676654332 2233    3589999876 557


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ..|++|.-..+.      ... ..++...||++++|+.+....++.++=+-|.+=
T Consensus       386 GtG~~~DW~~l~------~~~-~~p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE  433 (454)
T PRK09427        386 GTGQTFDWSLLP------GQS-LDNVLLAGGLNPDNCQQAAQLGCAGLDFNSGVE  433 (454)
T ss_pred             CCCCccChHHhh------hcc-cCCEEEECCCCHHHHHHHHhcCCCEEEeCCccc
Confidence            778888654332      111 457999999999999998888999988888775

>PLN02826 dihydroorotate dehydrogenase

Probab=97.90  E-value=0.0015  Score=55.36  Aligned_cols=131  Identities=15%  Similarity=0.198  Sum_probs=88.8

Q ss_pred             hHHHHHHHHhCC--CCEEEEcccCCc----------chHHHHHHHHHHc----------CCceEEEecCCCCHHhHHhhH
Q 031554            5 PLDYVEPLGKAG--ASGFTFHVEISK----------DNWQELVQRIKSK----------GMRPGVALKPGTSVEEVYPLV   62 (157)
Q Consensus         5 p~~~i~~~~~~g--ad~v~vh~e~~~----------~~~~~~i~~ir~~----------g~~~gl~l~~~t~~~~~~~~~   62 (157)
                      +.+|...+..++  ||++.+-.-++.          +.+.++++.+++.          ..-+.+=+.|+.+.+.+..+.
T Consensus       203 ~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia  282 (409)
T PLN02826        203 AADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIA  282 (409)
T ss_pred             HHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHH
Confidence            577887776666  999998743222          1225566665532          233444578887654433333


Q ss_pred             hc--CCCCCeEEEEeee----------------CCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHc
Q 031554           63 EG--ANPVEMVLVMTVE----------------PGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASA  122 (157)
Q Consensus        63 ~~--~~~~d~vl~m~v~----------------pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~  122 (157)
                      +.  ..++|.|.+--..                -|.+|....+..++-++++++... +++|..+|||. .+++-+.+.+
T Consensus       283 ~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~A  362 (409)
T PLN02826        283 AVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRA  362 (409)
T ss_pred             HHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHh
Confidence            21  1579998775311                134566666678888999988753 69999999999 6999999999


Q ss_pred             CCCEEEEcccccC
Q 031554          123 GANCIVAGSSVFG  135 (157)
Q Consensus       123 Gad~vV~GSai~~  135 (157)
                      ||+.+=+||+++-
T Consensus       363 GAs~VQv~Ta~~~  375 (409)
T PLN02826        363 GASLVQLYTAFAY  375 (409)
T ss_pred             CCCeeeecHHHHh
Confidence            9999999999663

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.90  E-value=0.00051  Score=59.58  Aligned_cols=126  Identities=22%  Similarity=0.175  Sum_probs=79.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc--hHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC--
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD--NWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--   80 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~--~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~--   80 (157)
                      ...++.+.++|+|.+.+- -++.+  ...+.++++|+. +..+-|.-..-...+.++.+++  .++|.|.+ ++.||.  
T Consensus       244 ~~ra~~Lv~aGvd~i~vd-~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~v-g~g~Gs~c  319 (502)
T PRK07107        244 AERVPALVEAGADVLCID-SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKV-GIGGGSIC  319 (502)
T ss_pred             HHHHHHHHHhCCCeEeec-CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEE-CCCCCcCc
Confidence            356778899999999885 33333  125788888885 3222222211223445555554  58999987 888881  


Q ss_pred             --CCcc-cch---hHHHHHHHHHhh-----CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           81 --GGQK-FMP---EMMDKVRSLRNR-----YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        81 --~gq~-~~~---~~~~ki~~l~~~-----~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                        ..|. ...   ..+..+.+.++.     ..+++|.+||||+ ..++.....+|||.+-+||.+-+
T Consensus       320 ~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag  386 (502)
T PRK07107        320 ITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFAR  386 (502)
T ss_pred             ccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhc
Confidence              1111 111   233344443321     2248999999999 58888888999999999998765

>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase

Probab=97.90  E-value=0.00058  Score=53.48  Aligned_cols=139  Identities=13%  Similarity=0.162  Sum_probs=98.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      ..+++.+.+..+|.||+-.|...+              .+..+++.+++.|+++.+++.|+..-  ++.-.+  -++|.|
T Consensus        73 ~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~~~q--i~~A~~--~GAd~V  148 (237)
T TIGR00559        73 EEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDADKDQ--ISAAAE--VGADRI  148 (237)
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHH--hCcCEE
Confidence            358999999999999999876542              23778999999999999999877433  322222  389999


Q ss_pred             EEEeeeCCCCCcccc----hhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHHc-C-CCEEEEcccccCC---CCHH
Q 031554           72 LVMTVEPGFGGQKFM----PEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASA-G-ANCIVAGSSVFGA---PEPA  140 (157)
Q Consensus        72 l~m~v~pG~~gq~~~----~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~~-G-ad~vV~GSai~~~---~d~~  140 (157)
                      -+.|-.   ....|.    ..-+++++...+.  ..++.+.+.-|+|-+|+..+... + .+-+-+|-+|+..   --..
T Consensus       149 ELhTG~---YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsiia~Al~~Gl~  225 (237)
T TIGR00559       149 EIHTGP---YANAYNKKEMAEELQRIVKASVHAHSLGLKVNAGHGLNYHNVKYFAEILPYLDELNIGHAIIADAVYLGLE  225 (237)
T ss_pred             EEechh---hhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHHhCCCCceEEecCHHHHHHHHHHhHH
Confidence            886533   222222    2235566555443  35799999999999999998665 4 6889999877742   1346


Q ss_pred             HHHHHHHHHHH
Q 031554          141 HVISLMRKSVE  151 (157)
Q Consensus       141 ~~~~~l~~~~~  151 (157)
                      ++++++++.++
T Consensus       226 ~AV~~m~~~~~  236 (237)
T TIGR00559       226 EAIREMRDLIK  236 (237)
T ss_pred             HHHHHHHHHHh
Confidence            77777777654

PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.90  E-value=0.00011  Score=58.09  Aligned_cols=82  Identities=21%  Similarity=0.338  Sum_probs=63.8

Q ss_pred             CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554           51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA  129 (157)
Q Consensus        51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~  129 (157)
                      ..+|++.++.+.+  .+++.+.+........++   +..++-++++++.. ++++.++|||+ .+++.++...|+|.+++
T Consensus        29 ~~d~~~~a~~~~~--~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Vii  102 (253)
T PRK02083         29 AGDPVELAKRYNE--EGADELVFLDITASSEGR---DTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSI  102 (253)
T ss_pred             cCCHHHHHHHHHH--cCCCEEEEEeCCcccccC---cchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence            3577777777754  578999988777522222   45677778877764 68999999999 79999999999999999


Q ss_pred             cccccCCCC
Q 031554          130 GSSVFGAPE  138 (157)
Q Consensus       130 GSai~~~~d  138 (157)
                      ||+.++.++
T Consensus       103 gt~~l~~p~  111 (253)
T PRK02083        103 NSAAVANPE  111 (253)
T ss_pred             ChhHhhCcH
Confidence            999997543

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=97.90  E-value=0.00043  Score=54.39  Aligned_cols=119  Identities=21%  Similarity=0.241  Sum_probs=88.3

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEecCCCC----H----HhHH
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALKPGTS----V----EEVY   59 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~~~t~----~----~~~~   59 (157)
                      .+-.+.++.+.++|++.|.+.....+               +.+.+.++.++++|+.+.+.+...+.    .    +.++
T Consensus        74 ~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~  153 (265)
T cd03174          74 RNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAK  153 (265)
T ss_pred             cCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHH
Confidence            33367899999999999999977652               22378888999999999887743333    3    3334


Q ss_pred             hhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc----CCCHhhHHHHHHcCCCEE
Q 031554           60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG----GLGPSTIAEAASAGANCI  127 (157)
Q Consensus        60 ~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG----GI~~~~i~~~~~~Gad~v  127 (157)
                      .+.+  .++|.|.+    +.+.|.....+..+.++.+++..+++++.+=+    |....|.-...++||+.|
T Consensus       154 ~~~~--~g~~~i~l----~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~i  219 (265)
T cd03174         154 ALEE--AGADEISL----KDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRV  219 (265)
T ss_pred             HHHH--cCCCEEEe----chhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEE
Confidence            4443  36888875    35566665666777799999887778888777    888899999999999986

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=97.89  E-value=0.00017  Score=59.40  Aligned_cols=137  Identities=20%  Similarity=0.273  Sum_probs=92.5

Q ss_pred             ChHHHHHHHHhCC--CCEEEEcccCC----------cchHHHHHHHHHHc-C-------CceEEEecCCCCHHhHHhhHh
Q 031554            4 NPLDYVEPLGKAG--ASGFTFHVEIS----------KDNWQELVQRIKSK-G-------MRPGVALKPGTSVEEVYPLVE   63 (157)
Q Consensus         4 ~p~~~i~~~~~~g--ad~v~vh~e~~----------~~~~~~~i~~ir~~-g-------~~~gl~l~~~t~~~~~~~~~~   63 (157)
                      .+++|.+.+.+++  ||++.+-.-++          .+.+.++++.+++. .       +-+.+=+.|+.+.+.+..+.+
T Consensus       152 ~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~  231 (335)
T TIGR01036       152 AKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIAD  231 (335)
T ss_pred             CHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHH
Confidence            3678888888887  99999854211          11225667776653 1       445556888876333322222


Q ss_pred             c--CCCCCeEEEEeee---------------CCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCC
Q 031554           64 G--ANPVEMVLVMTVE---------------PGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGA  124 (157)
Q Consensus        64 ~--~~~~d~vl~m~v~---------------pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Ga  124 (157)
                      .  ..++|.|.+....               -|.+|....+-.++.++++++..+ +++|..-|||. .+++.++..+||
T Consensus       232 ~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA  311 (335)
T TIGR01036       232 SLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGA  311 (335)
T ss_pred             HHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCC
Confidence            0  1578988865321               123455555667888888887654 68999999998 799999999999


Q ss_pred             CEEEEcccccC-CCCHH
Q 031554          125 NCIVAGSSVFG-APEPA  140 (157)
Q Consensus       125 d~vV~GSai~~-~~d~~  140 (157)
                      |.+-+||+++. .++..
T Consensus       312 ~~Vqv~ta~~~~Gp~~~  328 (335)
T TIGR01036       312 SLLQIYSGFIYWGPPLV  328 (335)
T ss_pred             cHHHhhHHHHHhCchHH
Confidence            99999999875 35543

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=97.88  E-value=0.00091  Score=54.66  Aligned_cols=132  Identities=12%  Similarity=0.174  Sum_probs=87.9

Q ss_pred             CcChHHHHH---HHHhCCCCEEEEcccCCc----------------chHHHHHHHHHHc---CCceEEEecCCCC----H
Q 031554            2 VTNPLDYVE---PLGKAGASGFTFHVEISK----------------DNWQELVQRIKSK---GMRPGVALKPGTS----V   55 (157)
Q Consensus         2 v~~p~~~i~---~~~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~---g~~~gl~l~~~t~----~   55 (157)
                      -.+|+.+.+   .+.+.|+|.|-+|.-.+.                +.+.++++.+++.   ++.+.+=+.+...    .
T Consensus        71 g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~  150 (312)
T PRK10550         71 GQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERK  150 (312)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHH
Confidence            357887775   346789999999954431                1225677777774   3556665544321    2


Q ss_pred             HhHHhhHhcCCCCCeEEEEeeeCCCCCcccchh--HHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH-HcCCCEEEEcc
Q 031554           56 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE--MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-SAGANCIVAGS  131 (157)
Q Consensus        56 ~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~--~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~-~~Gad~vV~GS  131 (157)
                      ..+.+.++. .++|.+.+   ++++..|.+...  .++.++++++.. +++|..-|||+ .+.+.++. ..|+|++-+|+
T Consensus       151 ~~~a~~l~~-~Gvd~i~V---h~Rt~~~~y~g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGR  225 (312)
T PRK10550        151 FEIADAVQQ-AGATELVV---HGRTKEDGYRAEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGR  225 (312)
T ss_pred             HHHHHHHHh-cCCCEEEE---CCCCCccCCCCCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcH
Confidence            223333333 57888855   566666655432  467788888764 78999999995 79998876 68999999999


Q ss_pred             cccCCCC
Q 031554          132 SVFGAPE  138 (157)
Q Consensus       132 ai~~~~d  138 (157)
                      +.+..|.
T Consensus       226 g~l~nP~  232 (312)
T PRK10550        226 GALNIPN  232 (312)
T ss_pred             HhHhCcH
Confidence            8776553

>PLN02363 phosphoribosylanthranilate isomerase

Probab=97.85  E-value=0.001  Score=52.95  Aligned_cols=119  Identities=14%  Similarity=0.115  Sum_probs=75.9

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH---HhHHh-hHhcCCCCCeEEEEeeeC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV---EEVYP-LVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~---~~~~~-~~~~~~~~d~vl~m~v~p   78 (157)
                      .+|+...+.+.+.|.|+|-+|...   + .+.++.++. +.++.-++...+..   +...+ +.   ..+|++|+-+- .
T Consensus       109 ~~~~~I~~~~~~~~ld~VQLHG~e---~-~~~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~---~~~D~~LlDs~-~  179 (256)
T PLN02363        109 DDANTILRAADSSDLELVQLHGNG---S-RAAFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDC---HLADWILVDSA-T  179 (256)
T ss_pred             CCHHHHHHHHHhcCCCEEEECCCC---C-HHHHHHhhc-CCcEEEEEEECchHHHHHHHHhhcc---ccCCEEEEeCC-C
Confidence            356667788889999999999753   2 355666664 35554456554332   22222 22   35799988763 3


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEccccc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVF  134 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~  134 (157)
                      |..|..|.-..+..    .......++...|||+++|+.+++. .++.++=+-|.+=
T Consensus       180 GGtG~t~DW~~l~~----~~~~~~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE  232 (256)
T PLN02363        180 GGSGKGFNWQNFKL----PSVRSRNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGIC  232 (256)
T ss_pred             CCCCCccCHHHhcc----cccccCCCEEEECCCCHHHHHHHHHhcCCcEEEeCCccc
Confidence            66788776433310    0111234689999999999999865 5777777766664

>PRK06801 hypothetical protein; Provisional

Probab=97.84  E-value=0.0011  Score=53.59  Aligned_cols=126  Identities=15%  Similarity=0.153  Sum_probs=85.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc--ch---HHHHHHHHHHcCCceEEEe-----------------cCCCCHHhHHhhHh
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK--DN---WQELVQRIKSKGMRPGVAL-----------------KPGTSVEEVYPLVE   63 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~--~~---~~~~i~~ir~~g~~~gl~l-----------------~~~t~~~~~~~~~~   63 (157)
                      ...++.+.+.|++.|-+=.-..+  +.   ..++.+.++.+|+.+-..+                 ...|..+.+.++.+
T Consensus        87 ~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~  166 (286)
T PRK06801         87 FEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVD  166 (286)
T ss_pred             HHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHH
Confidence            45788899999999988422211  11   1556667888887652221                 11445566677764


Q ss_pred             cCCCCCeEEEEeeeC--CCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CCHhhHHHHHHcCCCEEEEcccccC
Q 031554           64 GANPVEMVLVMTVEP--GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        64 ~~~~~d~vl~m~v~p--G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG--I~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      . .++|++-+ ++-+  |.... -.+-.+++++++++.. +++++.-||  |+.+++++++++|++.|-++|.++.
T Consensus       167 ~-tgvD~LAv-aiGt~Hg~y~~-~~~l~~e~l~~i~~~~-~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~  238 (286)
T PRK06801        167 R-TGIDALAV-AIGNAHGKYKG-EPKLDFARLAAIHQQT-GLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQ  238 (286)
T ss_pred             H-HCcCEEEe-ccCCCCCCCCC-CCCCCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHH
Confidence            3 58999987 4322  32211 0124577788887764 689999999  9999999999999999999999874

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=97.84  E-value=0.00066  Score=55.86  Aligned_cols=128  Identities=18%  Similarity=0.269  Sum_probs=82.2

Q ss_pred             HHHHhCCCCEEEEcccC---------Cc------c----------hHHHHHHHHHHc-C--CceEEEecCC------CCH
Q 031554           10 EPLGKAGASGFTFHVEI---------SK------D----------NWQELVQRIKSK-G--MRPGVALKPG------TSV   55 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---------~~------~----------~~~~~i~~ir~~-g--~~~gl~l~~~------t~~   55 (157)
                      +.+.++|.|.|-+|.-.         +.      +          ...++++++|+. |  +.+++-+++.      .+.
T Consensus       156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~  235 (338)
T cd04733         156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTE  235 (338)
T ss_pred             HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCH
Confidence            44577899999999542         10      0          115788899985 4  5678878742      333


Q ss_pred             HhHHhh---HhcCCCCCeEEEEeeeCCCCCcccc----------h--hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHH
Q 031554           56 EEVYPL---VEGANPVEMVLVMTVEPGFGGQKFM----------P--EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA  119 (157)
Q Consensus        56 ~~~~~~---~~~~~~~d~vl~m~v~pG~~gq~~~----------~--~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~  119 (157)
                      +...++   ++- .++|+|-+.   .|...+...          +  ..++-.+++|+.. +++|.++|+|+ ++.+.++
T Consensus       236 eea~~ia~~Le~-~Gvd~iev~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~t~~~a~~~  310 (338)
T cd04733         236 EDALEVVEALEE-AGVDLVELS---GGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-KTPLMVTGGFRTRAAMEQA  310 (338)
T ss_pred             HHHHHHHHHHHH-cCCCEEEec---CCCCCCccccccccCCccccchhhHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHH
Confidence            332222   221 357888653   332222110          1  1234556677664 79999999995 8999998


Q ss_pred             HHcC-CCEEEEcccccCCCCHHHH
Q 031554          120 ASAG-ANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus       120 ~~~G-ad~vV~GSai~~~~d~~~~  142 (157)
                      ++.| +|.|-+|+.+...|++...
T Consensus       311 l~~g~aD~V~lgR~~iadP~~~~k  334 (338)
T cd04733         311 LASGAVDGIGLARPLALEPDLPNK  334 (338)
T ss_pred             HHcCCCCeeeeChHhhhCccHHHH
Confidence            8876 9999999999987876543

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.84  E-value=0.00078  Score=56.86  Aligned_cols=80  Identities=23%  Similarity=0.487  Sum_probs=62.6

Q ss_pred             CceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH
Q 031554           43 MRPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS  121 (157)
Q Consensus        43 ~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~  121 (157)
                      ..+|.++++.. ..+.+..+++  .++|+|.+-+.++    .  .....+.++++|+.+|+.++.+.+-.|.+.+..+.+
T Consensus       142 l~v~aavg~~~~~~~~v~~lv~--aGvDvI~iD~a~g----~--~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~  213 (404)
T PRK06843        142 LRVGAAVSIDIDTIERVEELVK--AHVDILVIDSAHG----H--STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS  213 (404)
T ss_pred             eEEEEEEeCCHHHHHHHHHHHh--cCCCEEEEECCCC----C--ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH
Confidence            45777886532 2467777776  5899999876662    1  235667899999998999988888888999999999


Q ss_pred             cCCCEEEEc
Q 031554          122 AGANCIVAG  130 (157)
Q Consensus       122 ~Gad~vV~G  130 (157)
                      +|||+|.+|
T Consensus       214 aGaD~I~vG  222 (404)
T PRK06843        214 VGADCLKVG  222 (404)
T ss_pred             cCCCEEEEC
Confidence            999999988

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=97.84  E-value=0.00034  Score=55.52  Aligned_cols=75  Identities=16%  Similarity=0.180  Sum_probs=56.5

Q ss_pred             CCCC-HHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554           51 PGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        51 ~~t~-~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                      ..+| ++.++.|.+  .+++++=+.-.     |..    ..+.|+++.+. .+.++.+.|||+.++++.+.++|||-+++
T Consensus        36 ~~~pp~~~A~~~~~--~Ga~~lHvVDL-----g~~----n~~~i~~i~~~-~~~~v~vGGGIr~e~v~~~l~aGa~rVvI  103 (253)
T TIGR02129        36 SDKPSSYYAKLYKD--DGVKGCHVIML-----GPN----NDDAAKEALHA-YPGGLQVGGGINDTNAQEWLDEGASHVIV  103 (253)
T ss_pred             cCCCHHHHHHHHHH--cCCCEEEEEEC-----CCC----cHHHHHHHHHh-CCCCEEEeCCcCHHHHHHHHHcCCCEEEE
Confidence            3567 888888886  36676655433     322    23455555555 36899999999999999999999999999


Q ss_pred             cccccCCC
Q 031554          130 GSSVFGAP  137 (157)
Q Consensus       130 GSai~~~~  137 (157)
                      ||++|..+
T Consensus       104 GS~av~~~  111 (253)
T TIGR02129       104 TSWLFTKG  111 (253)
T ss_pred             CcHHHhCC
Confidence            99999743

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PRK05265 pyridoxine 5'-phosphate synthase; Provisional

Probab=97.83  E-value=0.00084  Score=52.67  Aligned_cols=142  Identities=11%  Similarity=0.160  Sum_probs=99.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      .++++.+.+..+|.||+-.|...+              .+..+++.+++.|+++.+++.|+..--.+.+-    -++|.|
T Consensus        76 ~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~----~GAd~V  151 (239)
T PRK05265         76 EEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAE----VGADRI  151 (239)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH----hCcCEE
Confidence            458999999999999999876542              23678999999999999999765433222222    389999


Q ss_pred             EEEeeeCCCC-CcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCC---CCHHHHHH
Q 031554           72 LVMTVEPGFG-GQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA---PEPAHVIS  144 (157)
Q Consensus        72 l~m~v~pG~~-gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~---~d~~~~~~  144 (157)
                      -+.|-.-.-. .+ -...-++++....+.  ..++.+.+..|+|.+|+..+.. -+..-+-+|-+|+..   --...+++
T Consensus       152 ELhTG~yA~a~~~-~~~~el~~~~~aa~~a~~lGL~VnAGHgLny~Nv~~i~~ip~i~EvnIGHsiia~Al~~Gl~~aV~  230 (239)
T PRK05265        152 ELHTGPYADAKTE-AEAAELERIAKAAKLAASLGLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAIIARALFVGLEEAVR  230 (239)
T ss_pred             EEechhhhcCCCc-chHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHhhCCCCeEEccCHHHHHHHHHHhHHHHHH
Confidence            8875432111 11 112336666665543  2579999999999999999866 567889999777642   13467777


Q ss_pred             HHHHHHHH
Q 031554          145 LMRKSVED  152 (157)
Q Consensus       145 ~l~~~~~~  152 (157)
                      ++++.++.
T Consensus       231 ~m~~~i~~  238 (239)
T PRK05265        231 EMKRLMDE  238 (239)
T ss_pred             HHHHHHhh
Confidence            77776653

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.83  E-value=0.00016  Score=56.63  Aligned_cols=82  Identities=21%  Similarity=0.327  Sum_probs=61.7

Q ss_pred             CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554           51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA  129 (157)
Q Consensus        51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~  129 (157)
                      ..+|.+.++.+.+  .++|.+.+..+..+..++   +..++.++++++.. ++++.++|||+ .+++..+...|+|.+++
T Consensus        26 ~~d~~~~a~~~~~--~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~i   99 (243)
T cd04731          26 AGDPVELAKRYNE--QGADELVFLDITASSEGR---ETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSI   99 (243)
T ss_pred             CCCHHHHHHHHHH--CCCCEEEEEcCCcccccC---cccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence            3466676676654  478988888776532222   33566677777764 68999999999 69999999999999999


Q ss_pred             cccccCCCC
Q 031554          130 GSSVFGAPE  138 (157)
Q Consensus       130 GSai~~~~d  138 (157)
                      ||++++.++
T Consensus       100 g~~~~~~p~  108 (243)
T cd04731         100 NSAAVENPE  108 (243)
T ss_pred             CchhhhChH
Confidence            999997554

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=97.83  E-value=0.0011  Score=51.57  Aligned_cols=110  Identities=14%  Similarity=0.130  Sum_probs=69.6

Q ss_pred             CCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC--------CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554           15 AGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG--------TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus        15 ~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~--------t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      .+|+.|.+.-++..++  ++++.+.   .-+++.....        .+...+.++++. ..+ .++++.+.--...+.+ 
T Consensus       100 ~~a~rvvigT~a~~~p--~~l~~~~---~vvslD~~~g~v~~~g~~~~~~~~~~~~~~-~g~-~ii~tdI~~dGt~~G~-  171 (221)
T TIGR00734       100 EFASRVVVATETLDIT--ELLRECY---TVVSLDFKEKFLDASGLFESLEEVRDFLNS-FDY-GLIVLDIHSVGTMKGP-  171 (221)
T ss_pred             ccceEEeecChhhCCH--HHHHHhh---hEEEEEeECCccccccccccHHHHHHHHHh-cCC-EEEEEECCccccCCCC-
Confidence            3699999998888776  5555443   2344443211        122223333221 234 5666655542122222 


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                        .++.++++++. .++++.+.|||+ .+++.++.+.|||.+++||+++.
T Consensus       172 --d~eli~~i~~~-~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~  218 (221)
T TIGR00734       172 --NLELLTKTLEL-SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK  218 (221)
T ss_pred             --CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence              35556666666 368899999999 79999999999999999999874

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional

Probab=97.82  E-value=0.00064  Score=56.53  Aligned_cols=140  Identities=16%  Similarity=0.100  Sum_probs=88.8

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhc-CCCCCe--
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEG-ANPVEM--   70 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~-~~~~d~--   70 (157)
                      .+++.++|++++.+.        .|. ++.+..-++.+.++|+.+.+-+.-..       ..+.+...++. +..++.  
T Consensus        88 ~~mL~d~G~~~viiGHSERR~~f~Et-d~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v~~~~  166 (355)
T PRK14905         88 PLMLKELGIELVMIGHSERRHVLKET-DQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQ  166 (355)
T ss_pred             HHHHHHcCCCEEEECcccccCccccc-HHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccCCHhh
Confidence            468899999999986        343 23336777888899999888775211       11222222210 022211  


Q ss_pred             --EEEEeeeC----CCCCcccch----hHHHHHHHH-Hhh----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccccc
Q 031554           71 --VLVMTVEP----GFGGQKFMP----EMMDKVRSL-RNR----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVF  134 (157)
Q Consensus        71 --vl~m~v~p----G~~gq~~~~----~~~~ki~~l-~~~----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai~  134 (157)
                        =+++.-+|    |++|+.-.+    +..+.|++. .+.    ..+++|...|+|+++|+.++ ...++|++-+||+..
T Consensus       167 ~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl  246 (355)
T PRK14905        167 LPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSAW  246 (355)
T ss_pred             cCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhc
Confidence              02334466    666665555    344455543 322    23579999999999999875 677899999999988


Q ss_pred             CCCCHHHHHHHHHHH
Q 031554          135 GAPEPAHVISLMRKS  149 (157)
Q Consensus       135 ~~~d~~~~~~~l~~~  149 (157)
                      +++++.+-++.+.+.
T Consensus       247 ~~~~f~~Ii~~~~~~  261 (355)
T PRK14905        247 DAQCFHALIADALKA  261 (355)
T ss_pred             cHHHHHHHHHHHHHh
Confidence            777776666655543

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=97.78  E-value=0.00029  Score=54.75  Aligned_cols=80  Identities=15%  Similarity=0.312  Sum_probs=59.3

Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .+|++.++.|-+  .+++.+.+.-+.-...++..   .++-++++++.. +.++.++|||+ .+.+..+.+.|++.+++|
T Consensus        30 ~dp~~~a~~~~~--~g~~~i~i~dl~~~~~~~~~---n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg  103 (232)
T TIGR03572        30 GDPVNAARIYNA--KGADELIVLDIDASKRGREP---LFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSIN  103 (232)
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEeCCCcccCCCC---CHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            478887777753  47899988766643333333   334455555553 68899999999 699999999999999999


Q ss_pred             ccccCCC
Q 031554          131 SSVFGAP  137 (157)
Q Consensus       131 Sai~~~~  137 (157)
                      |+++..+
T Consensus       104 ~~~l~~~  110 (232)
T TIGR03572       104 TAALENP  110 (232)
T ss_pred             hhHhcCH
Confidence            9999644

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PTZ00333 triosephosphate isomerase; Provisional

Probab=97.77  E-value=0.0017  Score=51.66  Aligned_cols=129  Identities=18%  Similarity=0.251  Sum_probs=82.1

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCC--------HH----hHHhhHhcCCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTS--------VE----EVYPLVEGANPV   68 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~--------~~----~~~~~~~~~~~~   68 (157)
                      .+++.++|++++.+.        .|+. +.+.+-++.+.++|+.+.+-+. +|.        .+    .++..+   ..+
T Consensus        82 ~~mL~d~G~~~viiGHSERR~~f~Etd-~~I~~Kv~~al~~gl~pIlCvG-E~~~~~~~~~~~~~v~~Ql~~~l---~~v  156 (255)
T PTZ00333         82 AEMLKDLGINWTILGHSERRQYFGETN-EIVAQKVKNALENGLKVILCIG-ETLEEREAGQTSDVLSKQLEAIV---KKV  156 (255)
T ss_pred             HHHHHHcCCCEEEECcccccCcCCCCc-HHHHHHHHHHHHCCCEEEEEcC-CCHHHHhCCCHHHHHHHHHHHHH---hcC
Confidence            468899999999987        4543 3447888889999999888775 221        11    233333   333


Q ss_pred             Ce----EEEEeeeC----CCCCcccchhHHH-HHHHHHh----h-----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEE
Q 031554           69 EM----VLVMTVEP----GFGGQKFMPEMMD-KVRSLRN----R-----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVA  129 (157)
Q Consensus        69 d~----vl~m~v~p----G~~gq~~~~~~~~-ki~~l~~----~-----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~  129 (157)
                      +.    =++..-+|    | +|+.-.++..+ -++.+|+    +     ..+.+|...|+|+++|+.++ ...++|++-+
T Consensus       157 ~~~~~~~iiIAYEPvWAIG-tg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~Lv  235 (255)
T PTZ00333        157 SDEAWDNIVIAYEPVWAIG-TGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLV  235 (255)
T ss_pred             CHHHcceEEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEE
Confidence            32    11233456    4 35554554333 2333333    2     13589999999999999764 6788999999


Q ss_pred             cccccCCCCHHHHHH
Q 031554          130 GSSVFGAPEPAHVIS  144 (157)
Q Consensus       130 GSai~~~~d~~~~~~  144 (157)
                      |++..+ +++.+-++
T Consensus       236 G~asl~-~~f~~Ii~  249 (255)
T PTZ00333        236 GGASLK-PDFVDIIK  249 (255)
T ss_pred             ehHhhh-hhHHHHHH
Confidence            998875 34444433

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=97.76  E-value=0.00031  Score=54.03  Aligned_cols=113  Identities=22%  Similarity=0.336  Sum_probs=67.4

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHH-c-CCceEE--Eec-CCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKS-K-GMRPGV--ALK-PGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~-~-g~~~gl--~l~-~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      .-++.+.+.|+|.+.|..-..+..+ .+.++.+.+ . |+.+-+  ++. ..++.+.++.++++  +++.||--    | 
T Consensus        76 ~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~l--G~~rVLTS----G-  148 (201)
T PF03932_consen   76 EDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIEL--GFDRVLTS----G-  148 (201)
T ss_dssp             HHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHH--T-SEEEES----T-
T ss_pred             HHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhc--CCCEEECC----C-
Confidence            4577889999999999975554322 233333332 2 444333  232 33466677777765  78888752    3 


Q ss_pred             CCcccchhHHHHHHHHHhh-CCCCcEEEEcCCCHhhHHHHHH-cCCCEE
Q 031554           81 GGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAAS-AGANCI  127 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~~~~i~~~~~-~Gad~v  127 (157)
                       |..-..+.++.++++.+. ...+.|.+.|||+.+|++.+.+ +|+.-|
T Consensus       149 -g~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~~tg~~~~  196 (201)
T PF03932_consen  149 -GAPTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELVEETGVREI  196 (201)
T ss_dssp             -TSSSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHHHHHT-SEE
T ss_pred             -CCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHhhCCeEE
Confidence             222333556777777654 3568999999999999999977 898766

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PRK00042 tpiA triosephosphate isomerase; Provisional

Probab=97.76  E-value=0.00077  Score=53.49  Aligned_cols=135  Identities=20%  Similarity=0.241  Sum_probs=81.0

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhc-CCCCCe--
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEG-ANPVEM--   70 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~-~~~~d~--   70 (157)
                      .+++.++|+++|.+.        .|. ++.+.+-++.+.++|+.+.+-+.-..       ..+.+.+.++. +..++.  
T Consensus        79 ~~mLkd~G~~~viiGHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~  157 (250)
T PRK00042         79 AEMLKDLGVKYVIIGHSERRQYFGET-DELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQ  157 (250)
T ss_pred             HHHHHHCCCCEEEeCcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHH
Confidence            468899999999997        232 12224444459999999888775211       11112222210 133321  


Q ss_pred             --EEEEeeeC----CCCCcccchh----HHHHHHHHHh-h----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccccc
Q 031554           71 --VLVMTVEP----GFGGQKFMPE----MMDKVRSLRN-R----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVF  134 (157)
Q Consensus        71 --vl~m~v~p----G~~gq~~~~~----~~~ki~~l~~-~----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai~  134 (157)
                        =++..-+|    |+ |..-.++    +.+.|++..+ +    ..+++|...|+|+++|+.++ ...++|++-+||+..
T Consensus       158 ~~~~vIAYEPvWAIGt-G~~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl  236 (250)
T PRK00042        158 FANLVIAYEPVWAIGT-GKTATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASL  236 (250)
T ss_pred             hCCEEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeee
Confidence              02233356    53 4333333    3344554433 1    23578999999999999775 678899999999998


Q ss_pred             CCCCHHHHHHH
Q 031554          135 GAPEPAHVISL  145 (157)
Q Consensus       135 ~~~d~~~~~~~  145 (157)
                      +.+++.+-++.
T Consensus       237 ~~~~f~~ii~~  247 (250)
T PRK00042        237 KAEDFLAIVKA  247 (250)
T ss_pred             chHHHHHHHHH
Confidence            77776665543

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=97.76  E-value=0.00045  Score=56.78  Aligned_cols=128  Identities=15%  Similarity=0.154  Sum_probs=82.0

Q ss_pred             HHHHhCCCCEEEEcccC------------Ccch-------------HHHHHHHHHHc---CCceEEEecCC------CCH
Q 031554           10 EPLGKAGASGFTFHVEI------------SKDN-------------WQELVQRIKSK---GMRPGVALKPG------TSV   55 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~------------~~~~-------------~~~~i~~ir~~---g~~~gl~l~~~------t~~   55 (157)
                      +.+.++|+|.|-+|.-.            ...+             +.++++.+|+.   +..+++-+++.      ...
T Consensus       161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~  240 (336)
T cd02932         161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDL  240 (336)
T ss_pred             HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCH
Confidence            45577899999999531            1111             14788888885   45677777753      233


Q ss_pred             HhHHhhH---hcCCCCCeEEEEeeeCCCCCc---cc-chhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcC-CCE
Q 031554           56 EEVYPLV---EGANPVEMVLVMTVEPGFGGQ---KF-MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANC  126 (157)
Q Consensus        56 ~~~~~~~---~~~~~~d~vl~m~v~pG~~gq---~~-~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~G-ad~  126 (157)
                      +...+++   +- .++|+|-+..  .+...+   .. ....++..+++++.. +++|.+.||| +++.+.++++.| +|+
T Consensus       241 ~e~~~ia~~Le~-~gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~~l~~g~aD~  316 (336)
T cd02932         241 EDSVELAKALKE-LGVDLIDVSS--GGNSPAQKIPVGPGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEAILESGRADL  316 (336)
T ss_pred             HHHHHHHHHHHH-cCCCEEEECC--CCCCcccccCCCccccHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHcCCCCe
Confidence            3333322   21 3578886521  111111   11 112345566677664 6899999999 589999999988 999


Q ss_pred             EEEcccccCCCCHHH
Q 031554          127 IVAGSSVFGAPEPAH  141 (157)
Q Consensus       127 vV~GSai~~~~d~~~  141 (157)
                      |-+|++++..+++..
T Consensus       317 V~~gR~~i~dP~~~~  331 (336)
T cd02932         317 VALGRELLRNPYWPL  331 (336)
T ss_pred             ehhhHHHHhCccHHH
Confidence            999999998787643

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=97.75  E-value=0.00089  Score=49.90  Aligned_cols=119  Identities=18%  Similarity=0.291  Sum_probs=74.9

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHc---CCceEEEecCCC--CHHhHHhh---HhcCCCCCe
Q 031554            5 PLDYVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSK---GMRPGVALKPGT--SVEEVYPL---VEGANPVEM   70 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~---g~~~gl~l~~~t--~~~~~~~~---~~~~~~~d~   70 (157)
                      -.+.++.+.++|||.+.++.-..      .+.+.+.++.+++.   ++.+.+-..|..  +.+.+.++   +.. .++|.
T Consensus        67 ~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~-~g~~~  145 (201)
T cd00945          67 KVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAE-AGADF  145 (201)
T ss_pred             HHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHH-hCCCE
Confidence            45677889999999999873321      12225666666665   666666555543  33444433   211 56776


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      |=   ..+|.....   ..+..++++++..+ ++++.+-||++ .+++..+...|++++++|
T Consensus       146 iK---~~~~~~~~~---~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g  201 (201)
T cd00945         146 IK---TSTGFGGGG---ATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS  201 (201)
T ss_pred             EE---eCCCCCCCC---CCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence            63   233322111   13445666666543 67899999999 888899999999999876

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=97.73  E-value=0.0011  Score=54.49  Aligned_cols=116  Identities=14%  Similarity=0.213  Sum_probs=73.7

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH-cCCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKS-KGMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~-~g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      ....+++.|. +-.+|--...+...++++..+. .+..+.+++... ...+.+..+++....+|+|.+-+.| |     .
T Consensus        62 mA~~la~~g~-~~~iHk~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~Ah-G-----h  134 (346)
T PRK05096         62 MAKALASFDI-LTAVHKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVAN-G-----Y  134 (346)
T ss_pred             HHHHHHHCCC-eEEEecCCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC-C-----c
Confidence            3445566654 3445543322211344444442 234455565433 3456677777411379999887555 3     3


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      ....++.|+++|+.+|+..|.+.-=.|.+.+..|..+|||++-+|
T Consensus       135 s~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVG  179 (346)
T PRK05096        135 SEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVG  179 (346)
T ss_pred             HHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEc
Confidence            456888999999999998875555556899999999999999876

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=97.72  E-value=0.00079  Score=55.57  Aligned_cols=130  Identities=13%  Similarity=0.124  Sum_probs=83.6

Q ss_pred             HHHHhCCCCEEEEccc---------CC-c---------------chHHHHHHHHHHc-CCceEEEecCCC------CHHh
Q 031554           10 EPLGKAGASGFTFHVE---------IS-K---------------DNWQELVQRIKSK-GMRPGVALKPGT------SVEE   57 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e---------~~-~---------------~~~~~~i~~ir~~-g~~~gl~l~~~t------~~~~   57 (157)
                      ..+.++|+|.|-+|.-         ++ .               ..+.++++.+|+. +..+++=+++..      ..+.
T Consensus       149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e  228 (337)
T PRK13523        149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQD  228 (337)
T ss_pred             HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHH
Confidence            4557789999999965         11 0               1125688888886 566777777632      3443


Q ss_pred             HHhhHhc--CCCCCeEEEEeeeCCCC----CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           58 VYPLVEG--ANPVEMVLVMTVEPGFG----GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        58 ~~~~~~~--~~~~d~vl~m~v~pG~~----gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                      ..++++.  ..++|+|-+-   .|..    .+.+....++-.+++|+. .+++|.+-|+|+ ++.+.++++.| +|.|.+
T Consensus       229 ~~~i~~~l~~~gvD~i~vs---~g~~~~~~~~~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~  304 (337)
T PRK13523        229 YVQYAKWMKEQGVDLIDVS---SGAVVPARIDVYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFI  304 (337)
T ss_pred             HHHHHHHHHHcCCCEEEeC---CCCCCCCCCCCCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence            3333221  1358999763   3321    111111123445666665 368899999996 89999998877 999999


Q ss_pred             cccccCCCCHHHHH
Q 031554          130 GSSVFGAPEPAHVI  143 (157)
Q Consensus       130 GSai~~~~d~~~~~  143 (157)
                      |+++...|++-..+
T Consensus       305 gR~~iadP~~~~k~  318 (337)
T PRK13523        305 GRELLRNPYFPRIA  318 (337)
T ss_pred             hHHHHhCccHHHHH
Confidence            99999888764433

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=97.71  E-value=0.0034  Score=52.00  Aligned_cols=124  Identities=19%  Similarity=0.259  Sum_probs=80.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc------------------------------------------hHHHHHHHHHHcCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD------------------------------------------NWQELVQRIKSKGM   43 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~------------------------------------------~~~~~i~~ir~~g~   43 (157)
                      ...++.+.++|++.+.+|.+.+-.                                          ...+.++++++..-
T Consensus       134 ~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  213 (344)
T cd02922         134 EELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTK  213 (344)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcC
Confidence            456778889999999999776510                                          11356777777543


Q ss_pred             ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-cchhHHHHHHHHHh----hCCCCcEEEEcCCC-HhhHH
Q 031554           44 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRN----RYPSLDIEVDGGLG-PSTIA  117 (157)
Q Consensus        44 ~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~-~~~~~~~ki~~l~~----~~~~~~I~vdGGI~-~~~i~  117 (157)
                      .+-+.=.. +..+.++...+  .++|.|.+-  +.| +.|. .....+.-+.++++    ...+++|.+||||+ ..++.
T Consensus       214 ~PvivKgv-~~~~dA~~a~~--~G~d~I~vs--nhg-G~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~  287 (344)
T cd02922         214 LPIVLKGV-QTVEDAVLAAE--YGVDGIVLS--NHG-GRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVL  287 (344)
T ss_pred             CcEEEEcC-CCHHHHHHHHH--cCCCEEEEE--CCC-cccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHH
Confidence            33332232 44666666664  589999885  233 2221 11223333444444    23468999999999 69999


Q ss_pred             HHHHcCCCEEEEcccccC
Q 031554          118 EAASAGANCIVAGSSVFG  135 (157)
Q Consensus       118 ~~~~~Gad~vV~GSai~~  135 (157)
                      +.+..|||.+-+|++++.
T Consensus       288 kalaLGA~aV~iG~~~l~  305 (344)
T cd02922         288 KALCLGAKAVGLGRPFLY  305 (344)
T ss_pred             HHHHcCCCEEEECHHHHH
Confidence            999999999999998764

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.70  E-value=0.00041  Score=60.61  Aligned_cols=83  Identities=19%  Similarity=0.153  Sum_probs=64.7

Q ss_pred             CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH------------hhHHH
Q 031554           51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------------STIAE  118 (157)
Q Consensus        51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~------------~~i~~  118 (157)
                      ..+|++.++.|-+  .++|.+.++-+.....+..-....++-|+++.+.. .+++.|.|||+-            +.++.
T Consensus       266 ~gdPve~a~~y~~--~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~~  342 (538)
T PLN02617        266 LGKPVELAGQYYK--DGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVASE  342 (538)
T ss_pred             CCCHHHHHHHHHH--cCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHHH
Confidence            3568888887775  68999999977743334333445677788887763 589999999996            77999


Q ss_pred             HHHcCCCEEEEcccccCC
Q 031554          119 AASAGANCIVAGSSVFGA  136 (157)
Q Consensus       119 ~~~~Gad~vV~GSai~~~  136 (157)
                      +..+|||-+++||+.++.
T Consensus       343 ~l~~GadkV~i~s~Av~~  360 (538)
T PLN02617        343 YFRSGADKISIGSDAVYA  360 (538)
T ss_pred             HHHcCCCEEEEChHHHhC
Confidence            999999999999987764

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.70  E-value=0.00048  Score=53.93  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=60.4

Q ss_pred             CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554           51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA  129 (157)
Q Consensus        51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~  129 (157)
                      ..+|++.++.|.+  .++|.+.+.-.+.- .+..   ..++-|+++.+.. ..+++++|||+ .+++..+..+||+-+|+
T Consensus        34 ~~dp~~~a~~~~~--~g~~~l~i~DLd~~-~~~~---~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~vii  106 (233)
T cd04723          34 TSDPLDVARAYKE--LGFRGLYIADLDAI-MGRG---DNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIV  106 (233)
T ss_pred             CCCHHHHHHHHHH--CCCCEEEEEeCccc-cCCC---ccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEE
Confidence            4578888888875  47888888777643 2332   3345566665553 57899999999 59999999999999999


Q ss_pred             cccccCC
Q 031554          130 GSSVFGA  136 (157)
Q Consensus       130 GSai~~~  136 (157)
                      ||..+..
T Consensus       107 gt~~~~~  113 (233)
T cd04723         107 GTETLPS  113 (233)
T ss_pred             cceeccc
Confidence            9998865

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=97.69  E-value=0.00078  Score=55.64  Aligned_cols=122  Identities=18%  Similarity=0.260  Sum_probs=90.1

Q ss_pred             HHHHHHHHhC-CCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC-CCCc
Q 031554            6 LDYVEPLGKA-GASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG-FGGQ   83 (157)
Q Consensus         6 ~~~i~~~~~~-gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG-~~gq   83 (157)
                      ....+..++. |.-.++++.-.  .+ ..+++.++.+|.++...+   +..+..++..+  -.+|.|+..+-+.| -.|.
T Consensus        93 ~~~~~~ii~~~~vpvv~~~~g~--~~-~~~i~~~~~~g~~v~~~v---~~~~~A~~~~~--~G~d~vI~~g~eAGGH~g~  164 (336)
T COG2070          93 EAGVDAIIEGAGVPVVSTSFGA--PP-AEFVARLKAAGIKVIHSV---ITVREALKAER--AGADAVIAQGAEAGGHRGG  164 (336)
T ss_pred             HHhhhhHHhcCCCCEEeccCCC--Cc-HHHHHHHHHcCCeEEEEe---CCHHHHHHHHh--CCCCEEEecCCcCCCcCCC
Confidence            3455666666 88888888764  34 789999999999888777   44555544443  58899987765543 1121


Q ss_pred             -ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           84 -KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        84 -~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                       ...+..+.-+.++++.+..+++.+.|||- .+.+......|||.+-+||.+.-
T Consensus       165 ~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~  218 (336)
T COG2070         165 VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA  218 (336)
T ss_pred             CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence             22455677889998886448999999998 68888899999999999998664

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=97.68  E-value=0.00045  Score=54.28  Aligned_cols=83  Identities=13%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           49 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        49 l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      +..++|++.++.|.+  .+..++=+.-.+-.+.|++-..+   -|+++.+.. +.+|+|.|||+ .+.+..+.++|++.+
T Consensus        28 ~y~~~P~~~a~~~~~--~Ga~~lHlVDLdgA~~g~~~n~~---~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rV  101 (241)
T COG0106          28 VYSDDPLEVAKKWSD--QGAEWLHLVDLDGAKAGGPRNLE---AIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARV  101 (241)
T ss_pred             EecCCHHHHHHHHHH--cCCcEEEEeeccccccCCcccHH---HHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEE
Confidence            345689998888876  46666666555655656554434   455555553 78899999999 699999999999999


Q ss_pred             EEcccccCCC
Q 031554          128 VAGSSVFGAP  137 (157)
Q Consensus       128 V~GSai~~~~  137 (157)
                      |+||.-++.+
T Consensus       102 iiGt~av~~p  111 (241)
T COG0106         102 IIGTAAVKNP  111 (241)
T ss_pred             EEecceecCH
Confidence            9999876533

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=97.67  E-value=0.0019  Score=51.29  Aligned_cols=122  Identities=14%  Similarity=0.078  Sum_probs=77.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHHcC---CceEEEec---CC---------------CCH-HhHHh
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD----NWQELVQRIKSKG---MRPGVALK---PG---------------TSV-EEVYP   60 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~~g---~~~gl~l~---~~---------------t~~-~~~~~   60 (157)
                      +-++.+.++||+.|.+...+..+    + ..+-+..+++|   +-+++...   ..               ++. +.+++
T Consensus        88 e~v~~~l~aGa~rVvIGS~av~~~~i~~-~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~  166 (253)
T TIGR02129        88 TNAQEWLDEGASHVIVTSWLFTKGKFDL-KRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEE  166 (253)
T ss_pred             HHHHHHHHcCCCEEEECcHHHhCCCCCH-HHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHH
Confidence            67889999999999999655443    4 44444455554   22233222   11               233 33454


Q ss_pred             hHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc--CCCEEEEcccccCC
Q 031554           61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA--GANCIVAGSSVFGA  136 (157)
Q Consensus        61 ~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~--Gad~vV~GSai~~~  136 (157)
                      +.   ..+..|++=.+.-....|-+.   ++-++++++. .+++|.+-||++ .+++..+.+.  |....|+|+++|..
T Consensus       167 ~~---~~~~~il~TdI~rDGtl~G~d---lel~~~l~~~-~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~f  238 (253)
T TIGR02129       167 LS---KYCDEFLIHAADVEGLCKGID---EELVSKLGEW-SPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDIF  238 (253)
T ss_pred             HH---hhCCEEEEeeecccCccccCC---HHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHHh
Confidence            44   347788876666533333333   4455555555 589999999999 7999988554  56669999998854

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=97.67  E-value=0.002  Score=52.86  Aligned_cols=119  Identities=12%  Similarity=0.149  Sum_probs=81.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-Cc-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQ-   83 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq-   83 (157)
                      ...++.+.+.++..|+++.-   .| .. ++.+++.|+++...+   ++++..+...+  .++|.|++-+.+.|.- |. 
T Consensus        72 ~~~l~vi~e~~v~~V~~~~G---~P-~~-~~~lk~~Gi~v~~~v---~s~~~A~~a~~--~GaD~vVaqG~EAGGH~G~~  141 (320)
T cd04743          72 AAQLAVVRAIKPTFALIAGG---RP-DQ-ARALEAIGISTYLHV---PSPGLLKQFLE--NGARKFIFEGRECGGHVGPR  141 (320)
T ss_pred             HHHHHHHHhcCCcEEEEcCC---Ch-HH-HHHHHHCCCEEEEEe---CCHHHHHHHHH--cCCCEEEEecCcCcCCCCCC
Confidence            46788889999999999964   34 34 689999999887666   45555555554  6899999998887522 21 


Q ss_pred             -cc--chhHHHHHHHHH--hhCCCCcEEEEcCCC-HhhHHHHHHcCC--------CEEEEccccc
Q 031554           84 -KF--MPEMMDKVRSLR--NRYPSLDIEVDGGLG-PSTIAEAASAGA--------NCIVAGSSVF  134 (157)
Q Consensus        84 -~~--~~~~~~ki~~l~--~~~~~~~I~vdGGI~-~~~i~~~~~~Ga--------d~vV~GSai~  134 (157)
                       +|  .|..++.+..-.  ....++++.+.|||. ...+......||        +++.+||.+.
T Consensus       142 ~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl  206 (320)
T cd04743         142 SSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYL  206 (320)
T ss_pred             CchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHh
Confidence             11  122333322110  011269999999997 577777778887        8999999754

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=97.67  E-value=0.00045  Score=54.55  Aligned_cols=80  Identities=13%  Similarity=0.102  Sum_probs=52.6

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      +|++.++.|.+  ....++-+--.+ |..|..   ...+-|+++.+.. ..+++++|||+ .+.+..+.+.|||-+|+||
T Consensus        32 ~p~~~a~~~~~--~g~~~lhivDLd-~a~g~~---~n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT  104 (243)
T TIGR01919        32 SLESAAKWWEQ--GGAEWIHLVDLD-AAFGGG---NNEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGT  104 (243)
T ss_pred             CHHHHHHHHHh--CCCeEEEEEECC-CCCCCc---chHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECc
Confidence            45566666652  233333333233 222333   2344566666654 47899999999 6999999999999999999


Q ss_pred             cccCCCCH
Q 031554          132 SVFGAPEP  139 (157)
Q Consensus       132 ai~~~~d~  139 (157)
                      ..++.++.
T Consensus       105 ~a~~~p~~  112 (243)
T TIGR01919       105 AALENPWW  112 (243)
T ss_pred             hhhCCHHH
Confidence            98875543

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=97.65  E-value=0.0013  Score=53.00  Aligned_cols=132  Identities=20%  Similarity=0.261  Sum_probs=86.4

Q ss_pred             hHHHHHHH--HhCCCCEEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHH----hHHhhHhcCC
Q 031554            5 PLDYVEPL--GKAGASGFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVE----EVYPLVEGAN   66 (157)
Q Consensus         5 p~~~i~~~--~~~gad~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~----~~~~~~~~~~   66 (157)
                      +.+|++.+  .+.|||.+.+..-.+           .+....+.+.+++. .+-+.+=|.|+.+..    .+....+  .
T Consensus       111 ~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~--~  188 (295)
T PF01180_consen  111 IEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAA--D  188 (295)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHT--H
T ss_pred             HHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhc--c
Confidence            45666555  338999999863221           11224566667766 555666788864432    2222222  5


Q ss_pred             CCCeEE----EEeee---C------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCC
Q 031554           67 PVEMVL----VMTVE---P------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGAN  125 (157)
Q Consensus        67 ~~d~vl----~m~v~---p------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad  125 (157)
                      .+|.|.    +....   +            |.+|....+..++.++++++..+ +++|..-|||. .+++.++..+|||
T Consensus       189 g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~  268 (295)
T PF01180_consen  189 GADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGAS  268 (295)
T ss_dssp             TECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTES
T ss_pred             ceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCC
Confidence            788877    22211   1            13455556778999999999865 79999999999 7999999999999


Q ss_pred             EEEEcccc-cCCCC
Q 031554          126 CIVAGSSV-FGAPE  138 (157)
Q Consensus       126 ~vV~GSai-~~~~d  138 (157)
                      .+=++|++ ++.++
T Consensus       269 ~Vqv~Sal~~~Gp~  282 (295)
T PF01180_consen  269 AVQVCSALIYRGPG  282 (295)
T ss_dssp             EEEESHHHHHHGTT
T ss_pred             HheechhhhhcCcH
Confidence            99999998 65454

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.62  E-value=0.00056  Score=54.32  Aligned_cols=80  Identities=15%  Similarity=0.289  Sum_probs=61.3

Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .+|++.++.|.+  .+++.+.+.-+.....++.   ..++-++++.+. .++++.++|||+ .+.+..+..+|++.+++|
T Consensus        30 ~dp~~~a~~~~~--~g~~~l~i~Dl~~~~~~~~---~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig  103 (258)
T PRK01033         30 GDPINAVRIFNE--KEVDELIVLDIDASKRGSE---PNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN  103 (258)
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEECCCCcCCCc---ccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence            478888888875  4689999887765433333   345556666665 468999999996 799999999999999999


Q ss_pred             ccccCCC
Q 031554          131 SSVFGAP  137 (157)
Q Consensus       131 Sai~~~~  137 (157)
                      |+++..+
T Consensus       104 s~~~~~~  110 (258)
T PRK01033        104 TAALEDP  110 (258)
T ss_pred             hHHhcCH
Confidence            9998654

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=97.60  E-value=0.003  Score=52.08  Aligned_cols=124  Identities=18%  Similarity=0.190  Sum_probs=79.9

Q ss_pred             HHHHHHHh--CCCCEEEEcccCCc-chHHHHHHHHHHcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554            7 DYVEPLGK--AGASGFTFHVEISK-DNWQELVQRIKSKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-   81 (157)
Q Consensus         7 ~~i~~~~~--~gad~v~vh~e~~~-~~~~~~i~~ir~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-   81 (157)
                      +.++.+.+  +|+|.+++-.-.-. ..+.+.++++|+.-- ..-++=|..|+. ..+.+++  .++|.|-+ ++=||.- 
T Consensus       111 er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e-~a~~Li~--aGAD~vKV-GIGpGSiC  186 (346)
T PRK05096        111 EKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGE-MVEELIL--SGADIVKV-GIGPGSVC  186 (346)
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHH-HHHHHHH--cCCCEEEE-cccCCccc
Confidence            45677777  59999998633211 122678888888532 233444666766 4455554  68998754 4445522 


Q ss_pred             --------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           82 --------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        82 --------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                              |-+ +-..+..+.+..+. ++.+|.+||||+ .-++...+.+|||.+-+||.+-+.
T Consensus       187 tTr~vtGvG~P-QltAV~~~a~~a~~-~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt  248 (346)
T PRK05096        187 TTRVKTGVGYP-QLSAVIECADAAHG-LGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGH  248 (346)
T ss_pred             cCccccccChh-HHHHHHHHHHHHHH-cCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCc
Confidence                    111 11233444444443 578999999999 688888889999999999987653

>PRK06852 aldolase; Validated

Probab=97.59  E-value=0.0028  Score=51.65  Aligned_cols=138  Identities=11%  Similarity=0.108  Sum_probs=84.6

Q ss_pred             HHHHHhCC------CCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEEecCCCC-------HHhHHhhHhc--CC
Q 031554            9 VEPLGKAG------ASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVALKPGTS-------VEEVYPLVEG--AN   66 (157)
Q Consensus         9 i~~~~~~g------ad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~l~~~t~-------~~~~~~~~~~--~~   66 (157)
                      ++.+...|      ||.|.+|.-.-.+       .+.++.++++++|+-+.+.+.|.-+       .+.+....++  --
T Consensus       121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL  200 (304)
T PRK06852        121 VEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL  200 (304)
T ss_pred             HHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH
Confidence            67788877      8899999433221       1256677888899976654543321       1222211110  02


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH------hhHHHHHH-cCCCEEEEcccccCCCCH
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------STIAEAAS-AGANCIVAGSSVFGAPEP  139 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~------~~i~~~~~-~Gad~vV~GSai~~~~d~  139 (157)
                      +.|+|=   +.+-..-....++.++++   -+-+..++|.+.||=+.      +.+....+ +||.++++|+-||+.++|
T Consensus       201 GADIVK---v~y~~~~~~g~~e~f~~v---v~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p  274 (304)
T PRK06852        201 GADFVK---VNYPKKEGANPAELFKEA---VLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLD  274 (304)
T ss_pred             cCCEEE---ecCCCcCCCCCHHHHHHH---HHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCc
Confidence            778883   333211111123444443   33444578999999884      22344456 899999999999999888


Q ss_pred             --HHHHHHHHHHHHH
Q 031554          140 --AHVISLMRKSVED  152 (157)
Q Consensus       140 --~~~~~~l~~~~~~  152 (157)
                        .+.++.+..++.+
T Consensus       275 ~~~~~~~Ai~~IVH~  289 (304)
T PRK06852        275 EAVRMCNAIYAITVE  289 (304)
T ss_pred             hHHHHHHHHHHHHhC
Confidence              8888988887653

>PLN02429 triosephosphate isomerase

Probab=97.59  E-value=0.0064  Score=49.77  Aligned_cols=130  Identities=18%  Similarity=0.233  Sum_probs=80.2

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCH-------------HhHHhhHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSV-------------EEVYPLVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~-------------~~~~~~~~~~~~   67 (157)
                      .+++.++|++++.+.        .|. ++.+.+-++.+.++|+.+.+-+.  .+.             +.++..+   ..
T Consensus       140 a~mLkd~Gv~~ViiGHSERR~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG--E~l~ere~g~t~~vi~~Ql~~~l---~~  213 (315)
T PLN02429        140 VEQLKDLGCKWVILGHSERRHVIGEK-DEFIGKKAAYALSEGLGVIACIG--EKLEEREAGKTFDVCFAQLKAFA---DA  213 (315)
T ss_pred             HHHHHHcCCCEEEeCccccCCCCCcC-HHHHHHHHHHHHHCcCEEEEEcC--CCHHHHhCCCHHHHHHHHHHHHH---cc
Confidence            468899999999997        222 22224444459999998888775  322             1344444   33


Q ss_pred             CCe--EEEEeeeC----CCCCcccchhHHH----HHHHHH-h-----hCCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEc
Q 031554           68 VEM--VLVMTVEP----GFGGQKFMPEMMD----KVRSLR-N-----RYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAG  130 (157)
Q Consensus        68 ~d~--vl~m~v~p----G~~gq~~~~~~~~----ki~~l~-~-----~~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~G  130 (157)
                      ++.  =++..-+|    | +|+.-.++..+    .|++.- +     ...+++|...|+|+++|+.++ ...++|++-+|
T Consensus       214 v~~~~~ivIAYEPvWAIG-TGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVG  292 (315)
T PLN02429        214 VPSWDNIVVAYEPVWAIG-TGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVG  292 (315)
T ss_pred             CCcccceEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEee
Confidence            321  01233456    4 34443343333    343321 1     124689999999999999875 57899999999


Q ss_pred             ccccCCCCHHHHHHH
Q 031554          131 SSVFGAPEPAHVISL  145 (157)
Q Consensus       131 Sai~~~~d~~~~~~~  145 (157)
                      ++..+.+++..-++.
T Consensus       293 gASL~~~~F~~Ii~~  307 (315)
T PLN02429        293 GASLKGPEFATIVNS  307 (315)
T ss_pred             cceecHHHHHHHHHH
Confidence            998876666555543

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=97.58  E-value=0.0063  Score=51.18  Aligned_cols=146  Identities=14%  Similarity=0.160  Sum_probs=90.2

Q ss_pred             ChHHHH---HHHHhCCCCEEEEcccC---------------CcchHHHHHHHHHHc-CCceEEEecCCC-CHHhHHh-hH
Q 031554            4 NPLDYV---EPLGKAGASGFTFHVEI---------------SKDNWQELVQRIKSK-GMRPGVALKPGT-SVEEVYP-LV   62 (157)
Q Consensus         4 ~p~~~i---~~~~~~gad~v~vh~e~---------------~~~~~~~~i~~ir~~-g~~~gl~l~~~t-~~~~~~~-~~   62 (157)
                      +++.|.   +.+.++|||++.+-.-.               ..+.+.++++++|+. .+-+.+=|.|+. .+..+.+ ..
T Consensus       125 s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~  204 (385)
T PLN02495        125 NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVAL  204 (385)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHH
Confidence            444444   55677899999985321               112235666778876 344455588765 4433333 33


Q ss_pred             hcCCCCCeEEEEeeeC-C----------------------CCCcccchhHHHHHHHHHhhCC-----CCcEEEEcCCC-H
Q 031554           63 EGANPVEMVLVMTVEP-G----------------------FGGQKFMPEMMDKVRSLRNRYP-----SLDIEVDGGLG-P  113 (157)
Q Consensus        63 ~~~~~~d~vl~m~v~p-G----------------------~~gq~~~~~~~~ki~~l~~~~~-----~~~I~vdGGI~-~  113 (157)
                      +  .++|.|.+.-..+ +                      ..|....|-.+..+.++++...     +++|..-|||. .
T Consensus       205 ~--~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~  282 (385)
T PLN02495        205 K--SGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETG  282 (385)
T ss_pred             H--hCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCH
Confidence            2  5678776642211 1                      1122233445666666766532     58999999998 7


Q ss_pred             hhHHHHHHcCCCEEEEcccccCC-CC-HHHHHHHHHHHHH
Q 031554          114 STIAEAASAGANCIVAGSSVFGA-PE-PAHVISLMRKSVE  151 (157)
Q Consensus       114 ~~i~~~~~~Gad~vV~GSai~~~-~d-~~~~~~~l~~~~~  151 (157)
                      +++.++..+||+.+=++|+++.. ++ +.+..+.|.+.++
T Consensus       283 ~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~  322 (385)
T PLN02495        283 GDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMK  322 (385)
T ss_pred             HHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHH
Confidence            99999999999999999998754 33 2444455555444

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=97.55  E-value=0.0095  Score=48.85  Aligned_cols=133  Identities=21%  Similarity=0.385  Sum_probs=85.9

Q ss_pred             cChHHHHHHH---HhCCCCEEEEcccCCc----------------chHHHHHHHHHHc-CCceEEEecCCC----CHHhH
Q 031554            3 TNPLDYVEPL---GKAGASGFTFHVEISK----------------DNWQELVQRIKSK-GMRPGVALKPGT----SVEEV   58 (157)
Q Consensus         3 ~~p~~~i~~~---~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~-g~~~gl~l~~~t----~~~~~   58 (157)
                      .+|+.+.+.+   .+.|+|.|-++.-.+.                +.+.++++.+++. +..+.+=+....    ..+..
T Consensus        64 ~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~  143 (318)
T TIGR00742        64 SDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFL  143 (318)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHH
Confidence            5677776544   4579999999854331                1237788888875 666665554321    21222


Q ss_pred             ---HhhHhcCCCCCeEEEEeeeC---CCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEE
Q 031554           59 ---YPLVEGANPVEMVLVMTVEP---GFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIV  128 (157)
Q Consensus        59 ---~~~~~~~~~~d~vl~m~v~p---G~~gq~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV  128 (157)
                         .+.++. .++|.|.+.+..+   |++|..   ..+..++.|+++++..++++|..=|||. .+++.++.+ |+|++-
T Consensus       144 ~~~~~~l~~-~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVM  221 (318)
T TIGR00742       144 CDFVEIVSG-KGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVM  221 (318)
T ss_pred             HHHHHHHHH-cCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEE
Confidence               222222 5788885543322   223321   1233577788888877789999999998 699988875 999999


Q ss_pred             EcccccCCC
Q 031554          129 AGSSVFGAP  137 (157)
Q Consensus       129 ~GSai~~~~  137 (157)
                      +|++++..|
T Consensus       222 igRgal~nP  230 (318)
T TIGR00742       222 VGREAYENP  230 (318)
T ss_pred             ECHHHHhCC
Confidence            999887644

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd02067 B12-binding B12 binding domain (B12-BD)

Probab=97.55  E-value=0.004  Score=43.33  Aligned_cols=101  Identities=10%  Similarity=0.122  Sum_probs=68.2

Q ss_pred             EcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC
Q 031554           22 FHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP  101 (157)
Q Consensus        22 vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~  101 (157)
                      +..|..+-.+.-+-..++..|.++ +.+.+.+|.+.+.+.+.. ..+|+|.+-+..    ++. .+...+-++++|+..+
T Consensus         7 ~~~e~H~lG~~~~~~~l~~~G~~V-~~lg~~~~~~~l~~~~~~-~~pdvV~iS~~~----~~~-~~~~~~~i~~l~~~~~   79 (119)
T cd02067           7 VGGDGHDIGKNIVARALRDAGFEV-IDLGVDVPPEEIVEAAKE-EDADAIGLSGLL----TTH-MTLMKEVIEELKEAGL   79 (119)
T ss_pred             eCCchhhHHHHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEeccc----ccc-HHHHHHHHHHHHHcCC
Confidence            334443333234555677889988 667788898877665544 688988774332    222 3455566777888777


Q ss_pred             -CCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554          102 -SLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus       102 -~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                       ++.|.+.|..-.+.-..+.+.|+|.++-
T Consensus        80 ~~~~i~vGG~~~~~~~~~~~~~G~D~~~~  108 (119)
T cd02067          80 DDIPVLVGGAIVTRDFKFLKEIGVDAYFG  108 (119)
T ss_pred             CCCeEEEECCCCChhHHHHHHcCCeEEEC
Confidence             7889999887766667889999998854

This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=97.52  E-value=0.0023  Score=53.65  Aligned_cols=128  Identities=18%  Similarity=0.250  Sum_probs=80.4

Q ss_pred             HHHHhCCCCEEEEcccC---C-------------c----------chHHHHHHHHHHc---CCceEEEecCCC-------
Q 031554           10 EPLGKAGASGFTFHVEI---S-------------K----------DNWQELVQRIKSK---GMRPGVALKPGT-------   53 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---~-------------~----------~~~~~~i~~ir~~---g~~~gl~l~~~t-------   53 (157)
                      +.+.++|+|.|-+|.-.   .             |          ..+.++++.+|+.   ++.+|+=+++..       
T Consensus       157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~  236 (382)
T cd02931         157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQ  236 (382)
T ss_pred             HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccc
Confidence            34468999999999632   1             0          1225888999985   345777676521       


Q ss_pred             -------------CHHhHH---hhHhcCCCCCeEEEEeeeCCCCCcc-------cch-h-HHHHHHHHHhhCCCCcEEEE
Q 031554           54 -------------SVEEVY---PLVEGANPVEMVLVMTVEPGFGGQK-------FMP-E-MMDKVRSLRNRYPSLDIEVD  108 (157)
Q Consensus        54 -------------~~~~~~---~~~~~~~~~d~vl~m~v~pG~~gq~-------~~~-~-~~~ki~~l~~~~~~~~I~vd  108 (157)
                                   ..+...   +.++- .++|+|-+-   .|...+.       +.+ . .+..++++|+.. ++++.+-
T Consensus       237 ~~~~~~~~~~~g~~~e~~~~~~~~l~~-~gvD~l~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi~~  311 (382)
T cd02931         237 GALPGEEFQEKGRDLEEGLKAAKILEE-AGYDALDVD---AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-DVPVIMA  311 (382)
T ss_pred             ccccccccccCCCCHHHHHHHHHHHHH-hCCCEEEeC---CCCCcccccccCCccCCcchhHHHHHHHHHHC-CCCEEEe
Confidence                         223222   22222 358888653   3322110       111 1 134456666664 6899999


Q ss_pred             cCCC-HhhHHHHHHcC-CCEEEEcccccCCCCHHHH
Q 031554          109 GGLG-PSTIAEAASAG-ANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus       109 GGI~-~~~i~~~~~~G-ad~vV~GSai~~~~d~~~~  142 (157)
                      |||+ ++++.++++.| +|.+.+|+++...+|+-..
T Consensus       312 G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k  347 (382)
T cd02931         312 GRMEDPELASEAINEGIADMISLGRPLLADPDVVNK  347 (382)
T ss_pred             CCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHH
Confidence            9995 79999988866 9999999999987876443

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=97.52  E-value=0.0042  Score=51.15  Aligned_cols=112  Identities=15%  Similarity=0.242  Sum_probs=72.2

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH----cCCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKS----KGMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~----~g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      ....+++.|. +-.+|-....   ++..+++++    .+..+.+++... ...+.++.+++....+|+|.+-+.| |   
T Consensus        61 mA~~la~~g~-~~~iHk~~~~---e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~Ah-G---  132 (343)
T TIGR01305        61 MAAALSQHSI-FTAIHKHYSV---DEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVAN-G---  132 (343)
T ss_pred             HHHHHHHCCC-eEEEeeCCCH---HHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCC-C---
Confidence            4455666554 3344543322   444444433    344555565433 3456777777531258999886555 3   


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEc-CCCHhhHHHHHHcCCCEEEEc
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdG-GI~~~~i~~~~~~Gad~vV~G  130 (157)
                        .....++.|+.+|+..|+..| +.| =.+++.+..+.++|||++.+|
T Consensus       133 --hs~~~i~~ik~ir~~~p~~~v-iaGNV~T~e~a~~Li~aGAD~ikVg  178 (343)
T TIGR01305       133 --YSEHFVEFVKLVREAFPEHTI-MAGNVVTGEMVEELILSGADIVKVG  178 (343)
T ss_pred             --cHHHHHHHHHHHHhhCCCCeE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence              334678889999999887655 555 456999999999999999988

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=97.52  E-value=0.00093  Score=52.23  Aligned_cols=82  Identities=21%  Similarity=0.343  Sum_probs=65.6

Q ss_pred             CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554           51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA  129 (157)
Q Consensus        51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~  129 (157)
                      ..+|++..+.|-+  .++|-+.++-+.....|+.   -+++-+++..+.. .+|+.|.|||+ .++++++..+|||-+-+
T Consensus        29 ~GDpVelA~~Y~e--~GADElvFlDItAs~~gr~---~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSI  102 (256)
T COG0107          29 AGDPVELAKRYNE--EGADELVFLDITASSEGRE---TMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSI  102 (256)
T ss_pred             cCChHHHHHHHHH--cCCCeEEEEecccccccch---hHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeee
Confidence            4679999888877  7999999998887666644   4555666666653 58999999999 69999999999999999


Q ss_pred             cccccCCCC
Q 031554          130 GSSVFGAPE  138 (157)
Q Consensus       130 GSai~~~~d  138 (157)
                      .|+-...++
T Consensus       103 NsaAv~~p~  111 (256)
T COG0107         103 NSAAVKDPE  111 (256)
T ss_pred             ChhHhcChH
Confidence            997665454

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=97.50  E-value=0.0034  Score=49.13  Aligned_cols=127  Identities=19%  Similarity=0.217  Sum_probs=81.2

Q ss_pred             CCCEEEEcccCC-----cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee-eCCCCCcccc
Q 031554           16 GASGFTFHVEIS-----KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV-EPGFGGQKFM   86 (157)
Q Consensus        16 gad~v~vh~e~~-----~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v-~pG~~gq~~~   86 (157)
                      +-|||-+-.=..     +++ .++++..+..   |..+  .-..+.+.-..+++.    .+--..+|-. -|-.+|+-. 
T Consensus        97 ~t~wiKlEVi~d~~tLlPD~-~etl~Aae~Lv~eGF~V--lPY~~dD~v~arrLe----e~GcaavMPl~aPIGSg~G~-  168 (262)
T COG2022          97 GTNWIKLEVIGDEKTLLPDP-IETLKAAEQLVKEGFVV--LPYTTDDPVLARRLE----EAGCAAVMPLGAPIGSGLGL-  168 (262)
T ss_pred             cCCeEEEEEecCCcccCCCh-HHHHHHHHHHHhCCCEE--eeccCCCHHHHHHHH----hcCceEeccccccccCCcCc-
Confidence            467776542211     234 5666665553   4432  222233333445554    3444555522 122233322 


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                       ..-..|+.+++.. ++++.||-||. +.++.+.-+.|+|.+-+-++|-.+.||....+.++..++-
T Consensus       169 -~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~A  233 (262)
T COG2022         169 -QNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVEA  233 (262)
T ss_pred             -CCHHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHHH
Confidence             2333556666665 89999999998 7999999999999999999999999999999999887663

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=97.50  E-value=0.0041  Score=50.77  Aligned_cols=148  Identities=17%  Similarity=0.302  Sum_probs=93.3

Q ss_pred             ChHHHH---HHHHhCC-CCEEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhc--C
Q 031554            4 NPLDYV---EPLGKAG-ASGFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEG--A   65 (157)
Q Consensus         4 ~p~~~i---~~~~~~g-ad~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~--~   65 (157)
                      ++++|.   +.+.++| ||.+.+-.-.+           .+.+.++++.+|+. .+-+.+=|.|+++...+.+..+.  .
T Consensus       103 ~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~  182 (310)
T PRK02506        103 SPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNK  182 (310)
T ss_pred             cHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCc
Confidence            344444   3445567 99998854322           12236778888875 44456668888876555433321  1


Q ss_pred             CCCCeEEEE-------eeeC--------------CCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHc
Q 031554           66 NPVEMVLVM-------TVEP--------------GFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASA  122 (157)
Q Consensus        66 ~~~d~vl~m-------~v~p--------------G~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~  122 (157)
                      ..++.|...       .+++              |.+|....+-.++.+.++++.. ++++|..-|||. .+++.++..+
T Consensus       183 ~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~a  262 (310)
T PRK02506        183 FPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILC  262 (310)
T ss_pred             CceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHc
Confidence            244443222       1211              1234555667888899998775 479999999998 7999999999


Q ss_pred             CCCEEEEcccccC-CCC-HHHHHHHHHHHHH
Q 031554          123 GANCIVAGSSVFG-APE-PAHVISLMRKSVE  151 (157)
Q Consensus       123 Gad~vV~GSai~~-~~d-~~~~~~~l~~~~~  151 (157)
                      |||.+=++|+++. .++ ..+-.+.|++.++
T Consensus       263 GA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~  293 (310)
T PRK02506        263 GASMVQVGTALHKEGPAVFERLTKELKAIMA  293 (310)
T ss_pred             CCCHHhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence            9999999999774 233 2344455555444

>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B

Probab=97.50  E-value=0.0022  Score=52.17  Aligned_cols=103  Identities=19%  Similarity=0.238  Sum_probs=63.2

Q ss_pred             HHHHHHHHHc-C--CceEEEecCCC-CHHhHHhhHhc-CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCc
Q 031554           32 QELVQRIKSK-G--MRPGVALKPGT-SVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLD  104 (157)
Q Consensus        32 ~~~i~~ir~~-g--~~~gl~l~~~t-~~~~~~~~~~~-~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~  104 (157)
                      ...++..++. .  .++-+.+..-+ .+....+..+. ..++|.|++-+.. +..|  -.++.++++++.-+.  .+++.
T Consensus       171 ~~A~~~~~~~~p~~~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~-~~~G--~~~~~~~~~~~~l~~~g~~~~~  247 (302)
T cd01571         171 VEAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPS-SRRG--VFRYLIREVRWALDIRGYKHVK  247 (302)
T ss_pred             HHHHHHHHHHCCCcCCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCC-CCCC--CHHHHHHHHHHHHHhCCCCCeE
Confidence            4566666664 2  34455553333 23333333211 0258898875321 0111  134555665554433  36688


Q ss_pred             EEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          105 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       105 I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      |++-||||++|++++.+.|+|.+-+||.+.+.+
T Consensus       248 ieaSGgI~~~~i~~~a~~gvD~isvGs~~~~~~  280 (302)
T cd01571         248 IFVSGGLDEEDIKELEDVGVDAFGVGTAISKAP  280 (302)
T ss_pred             EEEeCCCCHHHHHHHHHcCCCEEECCcccCCCC
Confidence            999999999999999999999999999988653

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=97.48  E-value=0.0088  Score=48.89  Aligned_cols=146  Identities=21%  Similarity=0.346  Sum_probs=98.1

Q ss_pred             hHHHHHHHHhCC-CCEEEEcccCCc-----------chHHHHHHHHHHcCCceEE-EecCC-CCHHhH-HhhHhcCCCCC
Q 031554            5 PLDYVEPLGKAG-ASGFTFHVEISK-----------DNWQELVQRIKSKGMRPGV-ALKPG-TSVEEV-YPLVEGANPVE   69 (157)
Q Consensus         5 p~~~i~~~~~~g-ad~v~vh~e~~~-----------~~~~~~i~~ir~~g~~~gl-~l~~~-t~~~~~-~~~~~~~~~~d   69 (157)
                      ..+|+..+-+++ ||++.+-.-++.           +.+.++++++++.-..+-+ =|.|+ +.+..+ ....+  .+.|
T Consensus       111 ~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~--~g~D  188 (310)
T COG0167         111 WADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEE--AGAD  188 (310)
T ss_pred             HHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHH--cCCc
Confidence            356777778888 899998754332           2336777888887555544 48882 222222 33332  4678


Q ss_pred             eEEEEe-ee------------------CCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEE
Q 031554           70 MVLVMT-VE------------------PGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIV  128 (157)
Q Consensus        70 ~vl~m~-v~------------------pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV  128 (157)
                      .|.+-- +.                  =|.+|....|-.++-|+++++.. ++++|.--|||. .+++-+.+.+||+.+=
T Consensus       189 gl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQ  268 (310)
T COG0167         189 GLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQ  268 (310)
T ss_pred             EEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchhe
Confidence            776542 11                  13345666677888899998864 479999999998 6999999999999999


Q ss_pred             EcccccCC-CCH-HHHHHHHHHHHHH
Q 031554          129 AGSSVFGA-PEP-AHVISLMRKSVED  152 (157)
Q Consensus       129 ~GSai~~~-~d~-~~~~~~l~~~~~~  152 (157)
                      +||+++.. +.. .+-.+.|.+.+++
T Consensus       269 v~Tal~~~Gp~i~~~I~~~l~~~l~~  294 (310)
T COG0167         269 VGTALIYKGPGIVKEIIKGLARWLEE  294 (310)
T ss_pred             eeeeeeeeCchHHHHHHHHHHHHHHH
Confidence            99998754 544 4444556665553

>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism

Probab=97.47  E-value=0.0036  Score=49.03  Aligned_cols=140  Identities=13%  Similarity=0.167  Sum_probs=94.2

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      ..+++.+.+..+|.||+-.|...+              .+..+++.+++.|+++.+++.|+..-  ++.-.+  -++|.|
T Consensus        73 ~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd~~q--i~~A~~--~GAd~V  148 (234)
T cd00003          73 EEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQ--IEAAKE--VGADRV  148 (234)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHH--hCcCEE
Confidence            458999999999999999876542              23678999999999999999876433  222222  389999


Q ss_pred             EEEeeeCCCC-CcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCCC---CHHHHHH
Q 031554           72 LVMTVEPGFG-GQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGAP---EPAHVIS  144 (157)
Q Consensus        72 l~m~v~pG~~-gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~~---d~~~~~~  144 (157)
                      -+.|-.-.-. .+.-...-++++....+.  ..++.+.+.-|+|-+|+..+.. -+..-+-+|-+|+...   -..++++
T Consensus       149 ELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnAGHgLny~Nv~~i~~ip~i~ElnIGHsiia~Al~~Gl~~AV~  228 (234)
T cd00003         149 ELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRALFVGLEEAVR  228 (234)
T ss_pred             EEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCCeEEccCHHHHHHHHHHhHHHHHH
Confidence            8865332111 111112346666655543  3579999999999999998744 5677788897776421   2345555


Q ss_pred             HHHHH
Q 031554          145 LMRKS  149 (157)
Q Consensus       145 ~l~~~  149 (157)
                      ++++.
T Consensus       229 ~m~~~  233 (234)
T cd00003         229 EMKDL  233 (234)
T ss_pred             HHHHh
Confidence            55543

In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,

>PRK15492 triosephosphate isomerase; Provisional

Probab=97.46  E-value=0.0028  Score=50.55  Aligned_cols=126  Identities=13%  Similarity=0.105  Sum_probs=79.0

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH---------HhhHhc-CCCC--
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV---------YPLVEG-ANPV--   68 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~---------~~~~~~-~~~~--   68 (157)
                      .+++.++|++++.+.        .|. ++.+..-++.+.++|+.+.+-+.  .+.+..         ...++. +..+  
T Consensus        87 a~mLkd~G~~~viiGHSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG--E~~e~r~~g~~~~v~~~Ql~~~l~~~~~  163 (260)
T PRK15492         87 PLMLKEIGTQLVMIGHSERRHKFGET-DQEENAKVLAALKHDFTTLLCVG--ETLEQKNYGISDEILRTQLKIGLHGINP  163 (260)
T ss_pred             HHHHHHcCCCEEEECccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcC--CcHHHHHcCCHHHHHHHHHHHHHhcCCH
Confidence            468899999999986        343 22336678889999998887774  333221         111110 0222  


Q ss_pred             Ce--EEEEeeeC----CCCCcccch----hHHHHHHHH-Hhh----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554           69 EM--VLVMTVEP----GFGGQKFMP----EMMDKVRSL-RNR----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS  132 (157)
Q Consensus        69 d~--vl~m~v~p----G~~gq~~~~----~~~~ki~~l-~~~----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa  132 (157)
                      +.  =+++.-+|    |++|..-.+    +..+.|++. .+.    ..+++|...|+|+++|+.++ ....+|++-+|++
T Consensus       164 ~~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~~~diDG~LvG~a  243 (260)
T PRK15492        164 DQLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRS  243 (260)
T ss_pred             hhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhcCCCCCEEEeehh
Confidence            11  12234456    665665555    445556653 332    24689999999999999997 4556999999998


Q ss_pred             ccCCC
Q 031554          133 VFGAP  137 (157)
Q Consensus       133 i~~~~  137 (157)
                      -...+
T Consensus       244 Sl~~~  248 (260)
T PRK15492        244 AWDAD  248 (260)
T ss_pred             hcCHH
Confidence            66433

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=97.45  E-value=0.00048  Score=53.93  Aligned_cols=45  Identities=22%  Similarity=0.449  Sum_probs=38.8

Q ss_pred             EEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          107 VDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       107 vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      +.|||- +.++..+-+.|||++-+||.||+++||.+..+.+-+...
T Consensus       213 AAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~~  258 (296)
T COG0214         213 AAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEATT  258 (296)
T ss_pred             cccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHHHHH
Confidence            566665 899999999999999999999999999988887766443

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=97.45  E-value=0.0066  Score=50.70  Aligned_cols=134  Identities=20%  Similarity=0.323  Sum_probs=83.1

Q ss_pred             HHHHHhCCCCEEEEcccCC----------------------cc---hHHHHHHHHHHc-CCc--eEEEecCCCC------
Q 031554            9 VEPLGKAGASGFTFHVEIS----------------------KD---NWQELVQRIKSK-GMR--PGVALKPGTS------   54 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~----------------------~~---~~~~~i~~ir~~-g~~--~gl~l~~~t~------   54 (157)
                      .+.+.++|.|.|-+|.--.                      ++   ...++++++|+. |..  +|+=++|.+.      
T Consensus       155 A~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~  234 (363)
T COG1902         155 ARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGL  234 (363)
T ss_pred             HHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCC
Confidence            4556889999999994220                      11   126778888886 443  7887887554      


Q ss_pred             -HHh---HHhhHhcCCC-CCeEEEEeeeCCCCC-cccc-h-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-C
Q 031554           55 -VEE---VYPLVEGANP-VEMVLVMTVEPGFGG-QKFM-P-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-A  124 (157)
Q Consensus        55 -~~~---~~~~~~~~~~-~d~vl~m~v~pG~~g-q~~~-~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-a  124 (157)
                       ++.   +.+.++- .+ +|++-+-+-..-..+ .... + ......+.++... ..++.+.|+|+ ++.+.++++.| |
T Consensus       235 ~~~e~~~la~~L~~-~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~-~~pvi~~G~i~~~~~Ae~~l~~g~a  312 (363)
T COG1902         235 TIEEAVELAKALEE-AGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV-RIPVIAVGGINDPEQAEEILASGRA  312 (363)
T ss_pred             CHHHHHHHHHHHHh-cCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence             222   2222221 23 788876532211011 1111 1 1223344455543 38888999887 79999999998 9


Q ss_pred             CEEEEcccccCCCCHHHHHH
Q 031554          125 NCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus       125 d~vV~GSai~~~~d~~~~~~  144 (157)
                      |.|.+|+.+...+|+...++
T Consensus       313 DlVa~gR~~ladP~~~~k~~  332 (363)
T COG1902         313 DLVAMGRPFLADPDLVLKAA  332 (363)
T ss_pred             CEEEechhhhcCccHHHHHH
Confidence            99999999998888765543

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=97.45  E-value=0.0033  Score=52.44  Aligned_cols=95  Identities=15%  Similarity=0.205  Sum_probs=66.1

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc--hhHHHHHHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM--PEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~--~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                      -+.++++|+.=-.+.+.=.. ...+..+...+  .++|.|.+-    +.+|..+.  +..++-+.++++.. +++|.+||
T Consensus       225 w~~i~~ir~~~~~pviiKgV-~~~eda~~a~~--~G~d~I~VS----nhGGrqld~~~~~~~~L~ei~~~~-~~~vi~dG  296 (361)
T cd04736         225 WQDLRWLRDLWPHKLLVKGI-VTAEDAKRCIE--LGADGVILS----NHGGRQLDDAIAPIEALAEIVAAT-YKPVLIDS  296 (361)
T ss_pred             HHHHHHHHHhCCCCEEEecC-CCHHHHHHHHH--CCcCEEEEC----CCCcCCCcCCccHHHHHHHHHHHh-CCeEEEeC
Confidence            35788888863223332232 45556666665  589999772    33343343  34677777777764 58999999


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          110 GLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ||+ ..++......|||.+.+|+.+.
T Consensus       297 GIr~g~Dv~KALaLGA~aV~iGr~~l  322 (361)
T cd04736         297 GIRRGSDIVKALALGANAVLLGRATL  322 (361)
T ss_pred             CCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            999 5888888999999999999865

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=97.45  E-value=0.005  Score=49.36  Aligned_cols=118  Identities=20%  Similarity=0.252  Sum_probs=85.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEec----CCCCHHhHHhhHhc--CCCCCeEEEEeeeC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALK----PGTSVEEVYPLVEG--ANPVEMVLVMTVEP   78 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~----~~t~~~~~~~~~~~--~~~~d~vl~m~v~p   78 (157)
                      ..+++...++|+|+|.+-.-..+ +.+.+.++.+|++|.++.+.++    +.++.+.+.++.+.  ..++|.|.+    +
T Consensus        94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l----~  169 (275)
T cd07937          94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICI----K  169 (275)
T ss_pred             HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEE----c
Confidence            45788889999999877543322 2237889999999988766543    44555544433321  147888866    4


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                      .+.|........+.++.+++..+ .+|.+    |-|....|.-...++||+.+=
T Consensus       170 DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd  222 (275)
T cd07937         170 DMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVD  222 (275)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEE
Confidence            66777777778888999998765 77777    889999999888899999874

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=97.44  E-value=0.0098  Score=46.63  Aligned_cols=120  Identities=18%  Similarity=0.275  Sum_probs=76.6

Q ss_pred             cChHHHHHHH--HhCCCCEEEEcccCC----------------cchHHHHHHHHHHcCCceEEEecCCC--CHHhHHhhH
Q 031554            3 TNPLDYVEPL--GKAGASGFTFHVEIS----------------KDNWQELVQRIKSKGMRPGVALKPGT--SVEEVYPLV   62 (157)
Q Consensus         3 ~~p~~~i~~~--~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~   62 (157)
                      .+|+.+.+.+  .+.++|.+-+-...+                .+.+.++++.+|+.++.+.+=+.+..  +...+.+.+
T Consensus        82 ~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~la~~l  161 (233)
T cd02911          82 SSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVDVDDEELARLI  161 (233)
T ss_pred             CCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHHHHHH
Confidence            4566665444  223567777643321                12236788889988777777666554  233333333


Q ss_pred             hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554           63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa  132 (157)
                      +- .++|.+-+.+..+|      .+..++.|++++   .+++|..-|||+ .+.+.++.+.|||.+-+|++
T Consensus       162 ~~-aG~d~ihv~~~~~g------~~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~  222 (233)
T cd02911         162 EK-AGADIIHVDAMDPG------NHADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYGADMVSVARA  222 (233)
T ss_pred             HH-hCCCEEEECcCCCC------CCCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence            32 57897643322222      123456677766   478999999997 79999999999999999999

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PRK07188 nicotinate phosphoribosyltransferase; Provisional

Probab=97.43  E-value=0.0047  Score=51.36  Aligned_cols=52  Identities=21%  Similarity=0.318  Sum_probs=41.7

Q ss_pred             cchhHHHHHHHH-HhhC-CCCcEEEEcCCCHhhHHHHHHcC--CCEEEEcccccCC
Q 031554           85 FMPEMMDKVRSL-RNRY-PSLDIEVDGGLGPSTIAEAASAG--ANCIVAGSSVFGA  136 (157)
Q Consensus        85 ~~~~~~~ki~~l-~~~~-~~~~I~vdGGI~~~~i~~~~~~G--ad~vV~GSai~~~  136 (157)
                      +.++.++++++. .+.. +++.|.+-|||+++++.++.++|  +|++=+||.+...
T Consensus       261 ~~~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~  316 (352)
T PRK07188        261 VNPELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI  316 (352)
T ss_pred             ccHHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence            455666665553 3333 78999999999999999999999  7999999998874

>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2

Probab=97.42  E-value=0.0058  Score=48.79  Aligned_cols=126  Identities=14%  Similarity=0.156  Sum_probs=72.5

Q ss_pred             HHHHHHHH-hCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCC-HHhHHh---------------hHhcCC--
Q 031554            6 LDYVEPLG-KAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTS-VEEVYP---------------LVEGAN--   66 (157)
Q Consensus         6 ~~~i~~~~-~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~-~~~~~~---------------~~~~~~--   66 (157)
                      ..|.+.++ ..|+|.+|+|.-.-.+.+..+++..+++|..+++.+-.++| -..++.               +.....  
T Consensus       103 ~~~a~a~~~~~g~D~vTvh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~  182 (261)
T TIGR02127       103 SAYAKAWLGHLHADALTVSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELNES  182 (261)
T ss_pred             HHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccc
Confidence            35677777 78999999998665556577888877777766665533331 112221               111100  


Q ss_pred             ----CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-----EEcCCCHhhHHH-HHHcCCC-EEEEcccccC
Q 031554           67 ----PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-----VDGGLGPSTIAE-AASAGAN-CIVAGSSVFG  135 (157)
Q Consensus        67 ----~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-----vdGGI~~~~i~~-~~~~Gad-~vV~GSai~~  135 (157)
                          ..|.+.    -|++.     |+   .++++|+..+++.|.     .-|| +.+.... +-+.|+| .+|+|+.|..
T Consensus       183 ~~~~g~~GvV----~gAT~-----p~---e~~~iR~~~~~~~il~PGigaqG~-~~~d~~r~~~~~g~~~~ivvgR~I~~  249 (261)
T TIGR02127       183 PGDCSSVGAV----VGATS-----PG---DLLRLRIEMPTAPFLVPGFGAQGA-EAADLRGLFGADGSGLLINSSRGVLF  249 (261)
T ss_pred             cCcCCceEEE----ECCCC-----HH---HHHHHHHhCCCCeEEeCCcCCCCC-CHHHHHHHhcccCCCEEEEcCHHHhc
Confidence                122222    12211     23   345555554555432     3444 4455555 4456889 8999999999


Q ss_pred             CCCHHHHHH
Q 031554          136 APEPAHVIS  144 (157)
Q Consensus       136 ~~d~~~~~~  144 (157)
                      ++||.++++
T Consensus       250 a~~p~~a~~  258 (261)
T TIGR02127       250 AGPRSSALV  258 (261)
T ss_pred             CCChHHHHH
Confidence            999976643

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=97.40  E-value=0.0067  Score=49.86  Aligned_cols=117  Identities=20%  Similarity=0.364  Sum_probs=71.9

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      .+|. +...++++|.=.+. |.+...+...+.++.+|+ ...++.++.+. ...+.++.+++  ..+|.|.+-.   ..+
T Consensus        46 t~~~-ma~ava~~GglGvi-~~~~~~~~~~~~i~~vk~-~l~v~~~~~~~~~~~~~~~~l~e--agv~~I~vd~---~~G  117 (325)
T cd00381          46 TESE-MAIAMARLGGIGVI-HRNMSIEEQAEEVRKVKG-RLLVGAAVGTREDDKERAEALVE--AGVDVIVIDS---AHG  117 (325)
T ss_pred             CcHH-HHHHHHHCCCEEEE-eCCCCHHHHHHHHHHhcc-CceEEEecCCChhHHHHHHHHHh--cCCCEEEEEC---CCC
Confidence            3443 55667888875554 544322221444444442 23344445432 22355666665  5788886532   222


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      .   .+...+.|+++++..|+++|.+....+.+.+..+.++|||.+++|
T Consensus       118 ~---~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg  163 (325)
T cd00381         118 H---SVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVG  163 (325)
T ss_pred             C---cHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence            1   245677788888887778887755566899999999999999984

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=97.39  E-value=0.0039  Score=48.64  Aligned_cols=118  Identities=20%  Similarity=0.243  Sum_probs=78.2

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHcCCceEEEec-----CCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSKGMRPGVALK-----PGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~g~~~gl~l~-----~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      +-++.+.++|++.|.+..-..+..+ ...++.+-+.---.++.++     ..+|.+.++.+.++  ++..||-      .
T Consensus        77 ~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~--Gv~RILT------s  148 (241)
T COG3142          77 EDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIEL--GVERILT------S  148 (241)
T ss_pred             HHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHC--CCcEEec------C
Confidence            4578889999999999976665432 3455554443223344332     23477778877764  6777763      2


Q ss_pred             CCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcccc
Q 031554           81 GGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSV  133 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai  133 (157)
                      +|..-..+.+++++++-+.- ..+.|.+.|||+++|+..+ ...|+.-+ =||++
T Consensus       149 Gg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~e~-H~s~~  202 (241)
T COG3142         149 GGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELVLLTGVTEV-HGSAG  202 (241)
T ss_pred             CCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCchhh-hhccc
Confidence            34444456677777776654 4688999999999999998 77887765 34433

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=97.38  E-value=0.0062  Score=52.19  Aligned_cols=118  Identities=18%  Similarity=0.246  Sum_probs=85.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEec----CCCCHH----hHHhhHhcCCCCCeEEEEee
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALK----PGTSVE----EVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~----~~t~~~----~~~~~~~~~~~~d~vl~m~v   76 (157)
                      ..+++.+.++|+|++.+-.-..+ +.+...++.+|++|..+.+.++    |-.+.+    .++++.+  .++|.|.+   
T Consensus        99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~--~Gad~I~i---  173 (448)
T PRK12331         99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQE--MGADSICI---  173 (448)
T ss_pred             HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHH--cCCCEEEE---
Confidence            45778899999999887744322 2237899999999988755443    323333    3444443  47888876   


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                       ....|........+.++.+|+.. +++|.+    |-|....|.-..+++|||+|=+.
T Consensus       174 -~Dt~G~l~P~~v~~lv~alk~~~-~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~s  229 (448)
T PRK12331        174 -KDMAGILTPYVAYELVKRIKEAV-TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTA  229 (448)
T ss_pred             -cCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCCCcHHHHHHHHHHcCCCEEEee
Confidence             46667776777888899999876 477877    88999999998999999987443

>TIGR00433 bioB biotin synthetase

Probab=97.38  E-value=0.03  Score=44.79  Aligned_cols=142  Identities=18%  Similarity=0.207  Sum_probs=88.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc---------h---HHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHh-c-CCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD---------N---WQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVE-G-ANPVE   69 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~---------~---~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~-~-~~~~d   69 (157)
                      .+.++.+.++|++.+.+..|..++         .   ..+.++.++++|+.++..  +......+.+.+.++ + .-++|
T Consensus       123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~  202 (296)
T TIGR00433       123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLPPE  202 (296)
T ss_pred             HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCC
Confidence            457889999999999999884321         1   134577888899987643  334444444433332 1 13567


Q ss_pred             eEEEEeee--CCCCCcccc----hhHHHHHHHHHhhCCCCcEEEEcCCC---HhhHHH-HHHcCCCEEEEcccccCCC-C
Q 031554           70 MVLVMTVE--PGFGGQKFM----PEMMDKVRSLRNRYPSLDIEVDGGLG---PSTIAE-AASAGANCIVAGSSVFGAP-E  138 (157)
Q Consensus        70 ~vl~m~v~--pG~~gq~~~----~~~~~ki~~l~~~~~~~~I~vdGGI~---~~~i~~-~~~~Gad~vV~GSai~~~~-d  138 (157)
                      .+.+....  ||+.=..+.    .+.++.+..+|...|+..|-+.||=.   .+..+. ...+|||.+++|-++.... .
T Consensus       203 ~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~~g~~  282 (296)
T TIGR00433       203 SVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNP  282 (296)
T ss_pred             EEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccCCCCC
Confidence            66554444  465422222    24566777777778887787777764   233334 6899999999999988543 3


Q ss_pred             HH-HHHHHHH
Q 031554          139 PA-HVISLMR  147 (157)
Q Consensus       139 ~~-~~~~~l~  147 (157)
                      +. +.++-++
T Consensus       283 ~~~~~~~~~~  292 (296)
T TIGR00433       283 EEDKDKKLLA  292 (296)
T ss_pred             CcHHHHHHHH
Confidence            33 4444444

Catalyzes the last step of the biotin biosynthesis pathway.

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=97.37  E-value=0.0049  Score=51.39  Aligned_cols=129  Identities=15%  Similarity=0.172  Sum_probs=80.0

Q ss_pred             HHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-C--CceEEEecCC---------
Q 031554           10 EPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-G--MRPGVALKPG---------   52 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g--~~~gl~l~~~---------   52 (157)
                      ..+.++|+|.|-+|.-.         +      |          ..+.++++.+|+. |  ..+|+=+++.         
T Consensus       151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~  230 (361)
T cd04747         151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARL  230 (361)
T ss_pred             HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCC
Confidence            45577899999999543         0      0          1125889999996 5  4577777752         


Q ss_pred             -CCHHhHHhh---HhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-----------------
Q 031554           53 -TSVEEVYPL---VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-----------------  111 (157)
Q Consensus        53 -t~~~~~~~~---~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-----------------  111 (157)
                       ...+....+   ++- .++|+|-+-+-  ++..+.+......-.+++|+.. ++++.+-|||                 
T Consensus       231 g~~~~e~~~~~~~l~~-~gvd~i~vs~g--~~~~~~~~~~~~~~~~~~k~~~-~~pv~~~G~i~~~~~~~~~~~~~~~~~  306 (361)
T cd04747         231 ADTPDELEALLAPLVD-AGVDIFHCSTR--RFWEPEFEGSELNLAGWTKKLT-GLPTITVGSVGLDGDFIGAFAGDEGAS  306 (361)
T ss_pred             CCCHHHHHHHHHHHHH-cCCCEEEecCC--CccCCCcCccchhHHHHHHHHc-CCCEEEECCcccccccccccccccccc
Confidence             112222222   322 36899754221  1112222222233344455543 6889999998                 


Q ss_pred             --CHhhHHHHHHcC-CCEEEEcccccCCCCHHHH
Q 031554          112 --GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus       112 --~~~~i~~~~~~G-ad~vV~GSai~~~~d~~~~  142 (157)
                        +++.+.++++.| +|.+.+|+++...|++...
T Consensus       307 ~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k  340 (361)
T cd04747         307 PASLDRLLERLERGEFDLVAVGRALLSDPAWVAK  340 (361)
T ss_pred             cCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHH
Confidence              678999988866 9999999999887776433

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=97.37  E-value=0.011  Score=48.73  Aligned_cols=125  Identities=18%  Similarity=0.162  Sum_probs=78.0

Q ss_pred             HHHHHHHhCC--CCEEEEcccCCc-chHHHHHHHHHHcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC--
Q 031554            7 DYVEPLGKAG--ASGFTFHVEISK-DNWQELVQRIKSKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--   80 (157)
Q Consensus         7 ~~i~~~~~~g--ad~v~vh~e~~~-~~~~~~i~~ir~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~--   80 (157)
                      +.++.+.+++  +|.+++-.-.-. ..+.+.++++|+.-- ...++=|..|+.....-+.   .++|.|.+ ++=||.  
T Consensus       110 er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~---aGAD~ikV-giGpGSic  185 (343)
T TIGR01305       110 EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELIL---SGADIVKV-GIGPGSVC  185 (343)
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHH---cCCCEEEE-cccCCCcc
Confidence            5677888885  999998633211 222678888888532 2333335566665444343   69998866 444442  


Q ss_pred             CCcccch---hHHHHHHHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           81 GGQKFMP---EMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        81 ~gq~~~~---~~~~ki~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      +++....   ..+.-+.+.++.  .++++|.+||||+ ..++...+.+|||.+-+|+.+-+
T Consensus       186 ttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG  246 (343)
T TIGR01305       186 TTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAG  246 (343)
T ss_pred             cCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhC
Confidence            1221110   133334444332  2478999999999 58888888999999999976654

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PLN02561 triosephosphate isomerase

Probab=97.37  E-value=0.0088  Score=47.57  Aligned_cols=122  Identities=17%  Similarity=0.230  Sum_probs=77.2

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCC-------CCH----HhHHhhHhcCCCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPG-------TSV----EEVYPLVEGANPVE   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-------t~~----~~~~~~~~~~~~~d   69 (157)
                      .+++.++|++++.+.        .|. ++.+..-++.+.++|+.+.+-+.-.       ...    +.++..+   ..++
T Consensus        81 ~~mL~d~G~~~viiGHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l---~~v~  156 (253)
T PLN02561         81 AEMLVNLGIPWVILGHSERRALLGES-NEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIA---DKVS  156 (253)
T ss_pred             HHHHHHcCCCEEEECcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHH---hccc
Confidence            468899999999987        343 3344777788889999988877522       111    2234444   3332


Q ss_pred             eE--EEEeeeC----CCCCcccchh----HHHHHHHH-Hhh-----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554           70 MV--LVMTVEP----GFGGQKFMPE----MMDKVRSL-RNR-----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS  132 (157)
Q Consensus        70 ~v--l~m~v~p----G~~gq~~~~~----~~~ki~~l-~~~-----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa  132 (157)
                      ..  +++.-+|    |+ |+.-.++    +...|++. .++     ..+++|...|+|+++|+.++ ...++|++-+|++
T Consensus       157 ~~~~iiIAYEPvWAIGt-G~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~A  235 (253)
T PLN02561        157 DWANVVLAYEPVWAIGT-GKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGA  235 (253)
T ss_pred             cccceEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHhcCCCCCeEEEehH
Confidence            11  2334466    53 4433333    33344442 222     24689999999999998875 6778999999998


Q ss_pred             ccC
Q 031554          133 VFG  135 (157)
Q Consensus       133 i~~  135 (157)
                      =..
T Consensus       236 SL~  238 (253)
T PLN02561        236 SLK  238 (253)
T ss_pred             hhH
Confidence            664

>TIGR00419 tim triosephosphate isomerase

Probab=97.36  E-value=0.0051  Score=47.44  Aligned_cols=117  Identities=24%  Similarity=0.325  Sum_probs=74.2

Q ss_pred             HHHHHhCCCCEEEEcc-c---CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC----CC
Q 031554            9 VEPLGKAGASGFTFHV-E---ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP----GF   80 (157)
Q Consensus         9 i~~~~~~gad~v~vh~-e---~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p----G~   80 (157)
                      .+++.++|++++.+.. |   ...+ +.+-++.+.++|+.+.+-+  +...+.+....   ...++|   .-+|    |+
T Consensus        74 ~~mLkd~G~~~viiGHSERRf~Etd-i~~Kv~~a~~~gl~~IvCi--~~v~~q~~~~~---~~~~vI---AYEPvWAIGt  144 (205)
T TIGR00419        74 AEMLKDIGAKGTLINHSERRMKLAD-IEKKIARLKELGLTSVVCT--NNVLTTAAAAA---LEPDVV---AVEPPELIGT  144 (205)
T ss_pred             HHHHHHcCCCEEEECcccCCCCccH-HHHHHHHHHHCCCEEEEEE--HHHHHHHHhhh---hcCeEE---EECCHHHhCC
Confidence            4688999999999872 1   1112 4778888999999988877  22222111111   112223   3356    53


Q ss_pred             CCcccchh----HHHHHHHHHhhCCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcccccC
Q 031554           81 GGQKFMPE----MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFG  135 (157)
Q Consensus        81 ~gq~~~~~----~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai~~  135 (157)
                       |..-.++    +.+.|+..++..++++|...|||+++|+.++ ...++|++-+||+..+
T Consensus       145 -G~~as~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~  203 (205)
T TIGR00419       145 -GIPVSPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLK  203 (205)
T ss_pred             -CCCCCHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence             4333333    3334443333345689999999999999875 6788999999998764

Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.

>PLN02411 12-oxophytodienoate reductase

Probab=97.35  E-value=0.0078  Score=50.68  Aligned_cols=133  Identities=21%  Similarity=0.260  Sum_probs=80.4

Q ss_pred             HHHHhCCCCEEEEcccCC---------------c-------c---hHHHHHHHHHHc-CC-ceEEEecCCCC--------
Q 031554           10 EPLGKAGASGFTFHVEIS---------------K-------D---NWQELVQRIKSK-GM-RPGVALKPGTS--------   54 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~~---------------~-------~---~~~~~i~~ir~~-g~-~~gl~l~~~t~--------   54 (157)
                      ..+.++|.|.|-+|.-..               |       +   -..++++++|+. |- .+|+=++|.+.        
T Consensus       172 ~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~  251 (391)
T PLN02411        172 LNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSD  251 (391)
T ss_pred             HHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCc
Confidence            345789999999994211               0       0   125788888886 42 37777887421        


Q ss_pred             -HH---hHHhhHhc----CC-CCCeEEEEeeeCCCCCc----ccch--hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHH
Q 031554           55 -VE---EVYPLVEG----AN-PVEMVLVMTVEPGFGGQ----KFMP--EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA  119 (157)
Q Consensus        55 -~~---~~~~~~~~----~~-~~d~vl~m~v~pG~~gq----~~~~--~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~  119 (157)
                       ++   .+.+.++.    .. .+|+|-+..-.....++    ...+  ......+++|+.. +.++.+-||++.+.+.++
T Consensus       252 ~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v-~~pvi~~G~i~~~~a~~~  330 (391)
T PLN02411        252 PLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY-QGTFMCSGGFTRELGMQA  330 (391)
T ss_pred             chhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc-CCCEEEECCCCHHHHHHH
Confidence             11   12222210    01 37888665321100011    0111  1112335566654 578999999999999999


Q ss_pred             HHcC-CCEEEEcccccCCCCHHHHH
Q 031554          120 ASAG-ANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       120 ~~~G-ad~vV~GSai~~~~d~~~~~  143 (157)
                      ++.| ||.|.+|+++...+|+...+
T Consensus       331 l~~g~aDlV~~gR~~iadPdl~~k~  355 (391)
T PLN02411        331 VQQGDADLVSYGRLFISNPDLVLRF  355 (391)
T ss_pred             HHcCCCCEEEECHHHHhCccHHHHH
Confidence            9988 99999999999888876554

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.35  E-value=0.019  Score=50.32  Aligned_cols=121  Identities=17%  Similarity=0.212  Sum_probs=80.7

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc------------hHHHHHHHHHHcCCc-eEEEecCC--------------------
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD------------NWQELVQRIKSKGMR-PGVALKPG--------------------   52 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~------------~~~~~i~~ir~~g~~-~gl~l~~~--------------------   52 (157)
                      .+.++.+.++|||-|++.-.+..+            | .-+-+.++++|-+ +.+++.+.                    
T Consensus       337 ~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p-~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~  415 (538)
T PLN02617        337 LEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGK-TSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNP  415 (538)
T ss_pred             HHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCH-HHHHHHHHHcCCceEEEEEecCcCcccCcccccccccccccc
Confidence            567899999999999999755553            3 3333445556877 66666532                    


Q ss_pred             -----------------------CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           53 -----------------------TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        53 -----------------------t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                                             ++++.++++.+  .++.-|++-++.-....+-+.-+   -++++++. .++++.+-|
T Consensus       416 ~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~--~Gageil~t~id~DGt~~G~d~~---l~~~v~~~-~~ipviasG  489 (538)
T PLN02617        416 GPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEE--LGAGEILLNCIDCDGQGKGFDIE---LVKLVSDA-VTIPVIASS  489 (538)
T ss_pred             CcCcccceEEEEEEecCcccCCCCHHHHHHHHHh--cCCCEEEEeeccccccccCcCHH---HHHHHHhh-CCCCEEEEC
Confidence                                   12344555554  36778888777654344444434   44444554 478999999


Q ss_pred             CCC-HhhHHHHHH-cCCCEEEEcccc
Q 031554          110 GLG-PSTIAEAAS-AGANCIVAGSSV  133 (157)
Q Consensus       110 GI~-~~~i~~~~~-~Gad~vV~GSai  133 (157)
                      |+. ++++.++.. .|||...++|.+
T Consensus       490 G~g~~~d~~~~~~~~~~~a~~aa~~f  515 (538)
T PLN02617        490 GAGTPEHFSDVFSKTNASAALAAGIF  515 (538)
T ss_pred             CCCCHHHHHHHHhcCCccEEEEEeee
Confidence            998 799988775 779998888754

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=97.34  E-value=0.0057  Score=50.68  Aligned_cols=130  Identities=12%  Similarity=0.081  Sum_probs=79.7

Q ss_pred             HHHHhCCCCEEEEccc---------CC----------------cchHHHHHHHHHHc-CCc--eEEEecCC------CCH
Q 031554           10 EPLGKAGASGFTFHVE---------IS----------------KDNWQELVQRIKSK-GMR--PGVALKPG------TSV   55 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e---------~~----------------~~~~~~~i~~ir~~-g~~--~gl~l~~~------t~~   55 (157)
                      ..+.++|+|.|-+|.-         ++                ...+.++++.+|+. |..  +++=+++.      .+.
T Consensus       144 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~  223 (353)
T cd02930         144 ALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTW  223 (353)
T ss_pred             HHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCH
Confidence            3457789999999972         11                01125788889985 544  45545542      243


Q ss_pred             HhHHh---hHhcCCCCCeEEEEee-e--CCCCCc-ccchh-HHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CC
Q 031554           56 EEVYP---LVEGANPVEMVLVMTV-E--PGFGGQ-KFMPE-MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-AN  125 (157)
Q Consensus        56 ~~~~~---~~~~~~~~d~vl~m~v-~--pG~~gq-~~~~~-~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad  125 (157)
                      +...+   .++- .++|+|-+-.- +  |-...+ .+.+. .+...+++|+.. +++|.+.|+++ ++.+.++++.| +|
T Consensus       224 ~e~~~i~~~Le~-~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~~~~~a~~~i~~g~~D  301 (353)
T cd02930         224 EEVVALAKALEA-AGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV-DIPVIASNRINTPEVAERLLADGDAD  301 (353)
T ss_pred             HHHHHHHHHHHH-cCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC-CCCEEEcCCCCCHHHHHHHHHCCCCC
Confidence            33322   2322 36899976211 1  110001 11111 233456666664 78999999995 89999998876 99


Q ss_pred             EEEEcccccCCCCHHH
Q 031554          126 CIVAGSSVFGAPEPAH  141 (157)
Q Consensus       126 ~vV~GSai~~~~d~~~  141 (157)
                      .+-+|++++..|++-.
T Consensus       302 ~V~~gR~~l~dP~~~~  317 (353)
T cd02930         302 MVSMARPFLADPDFVA  317 (353)
T ss_pred             hhHhhHHHHHCccHHH
Confidence            9999999998787643

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=97.30  E-value=0.0074  Score=49.58  Aligned_cols=113  Identities=16%  Similarity=0.324  Sum_probs=69.8

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC-CHHhHHhhHhcCCC--CCeEEEEeeeCCCCCc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT-SVEEVYPLVEGANP--VEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-~~~~~~~~~~~~~~--~d~vl~m~v~pG~~gq   83 (157)
                      +..+.+.+.|.-.+..  +...+.+..+++..+..+..+++++.... ..+.+.++.+  ..  +|+|.+-+.| |    
T Consensus        49 ~LA~~a~~~G~~~i~h--K~~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~--a~~~~d~i~~D~ah-g----  119 (321)
T TIGR01306        49 KLAEQLAENGYFYIMH--RFDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAE--EALTPEYITIDIAH-G----  119 (321)
T ss_pred             HHHHHHHHcCCEEEEe--cCCHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHh--cCCCCCEEEEeCcc-C----
Confidence            3456667776533333  32222223344444444665666664332 2356666664  24  6988775444 2    


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEc
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~G  130 (157)
                       .....++.|+.+|+..|... .+.|++ +.+.+..+.++|||++.+|
T Consensus       120 -~s~~~~~~i~~i~~~~p~~~-vi~GnV~t~e~a~~l~~aGad~I~V~  165 (321)
T TIGR01306       120 -HSNSVINMIKHIKTHLPDSF-VIAGNVGTPEAVRELENAGADATKVG  165 (321)
T ss_pred             -chHHHHHHHHHHHHhCCCCE-EEEecCCCHHHHHHHHHcCcCEEEEC
Confidence             23468889999999876544 456655 5899999999999999887

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=97.26  E-value=0.007  Score=50.97  Aligned_cols=102  Identities=18%  Similarity=0.315  Sum_probs=66.9

Q ss_pred             HHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc------c-ch--hHHHHHHHHHh-h
Q 031554           32 QELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK------F-MP--EMMDKVRSLRN-R   99 (157)
Q Consensus        32 ~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~------~-~~--~~~~ki~~l~~-~   99 (157)
                      .+.++.+|+..  +.+++=+.+....+.+...++. ..+|+|.+-+...|++..+      + .|  ..+..+.+... .
T Consensus       202 ~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~-~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~  280 (392)
T cd02808         202 AQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAA-AGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKN  280 (392)
T ss_pred             HHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHH-cCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHc
Confidence            77899999974  5667666555345555555543 3599999876554432211      1 11  23333333222 1


Q ss_pred             --CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          100 --YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       100 --~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                        ..+++|.++|||+ ..++......|||.+-+|+++.
T Consensus       281 ~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l  318 (392)
T cd02808         281 GLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAAL  318 (392)
T ss_pred             CCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHH
Confidence              2468999999997 7999999999999999998754

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=97.26  E-value=0.004  Score=52.03  Aligned_cols=118  Identities=17%  Similarity=0.296  Sum_probs=67.3

Q ss_pred             hCCCCEEEEcccCC---cchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch-
Q 031554           14 KAGASGFTFHVEIS---KDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP-   87 (157)
Q Consensus        14 ~~gad~v~vh~e~~---~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~-   87 (157)
                      .-|.|.++-..-..   .+.+.+.|+.+|+.+  +.+|+=+.....++.+.....- ..+|+|.+-+-+=|++..+..- 
T Consensus       170 ~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~-ag~D~ItIDG~~GGTGAap~~~~  248 (368)
T PF01645_consen  170 PPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAK-AGADFITIDGAEGGTGAAPLTSM  248 (368)
T ss_dssp             -TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHH-TT-SEEEEE-TT---SSEECCHH
T ss_pred             CCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhh-ccCCEEEEeCCCCCCCCCchhHH
Confidence            44667766542211   122367888888864  8889988888888776553222 6899999987776665444321 


Q ss_pred             --------hHHHHHH-HHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554           88 --------EMMDKVR-SLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        88 --------~~~~ki~-~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa  132 (157)
                              ..+.++. .|++.  ...+.+.++||+. +.++......|||.+-+|++
T Consensus       249 d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~  305 (368)
T PF01645_consen  249 DHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTA  305 (368)
T ss_dssp             HHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHH
T ss_pred             hhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecch
Confidence                    1222222 22222  3468999999998 79999999999999999975

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=97.23  E-value=0.015  Score=48.45  Aligned_cols=127  Identities=15%  Similarity=0.208  Sum_probs=79.5

Q ss_pred             HHHHhCCCCEEEEcccCC---------------c----------chHHHHHHHHHHc-CC-ceEEEecCCC---------
Q 031554           10 EPLGKAGASGFTFHVEIS---------------K----------DNWQELVQRIKSK-GM-RPGVALKPGT---------   53 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~~---------------~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t---------   53 (157)
                      ..+.++|+|.|-+|.-..               |          ..+.++++.+|+. |- .+|+=+++..         
T Consensus       166 ~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~  245 (362)
T PRK10605        166 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGP  245 (362)
T ss_pred             HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCC
Confidence            345779999999994221               0          0125788888885 32 3677676531         


Q ss_pred             CHHh----HHhhHhcCCCCCeEEEEeeeCCCC-CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEE
Q 031554           54 SVEE----VYPLVEGANPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCI  127 (157)
Q Consensus        54 ~~~~----~~~~~~~~~~~d~vl~m~v~pG~~-gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~v  127 (157)
                      ..+.    +.+.++- .++|+|-+-.  +.+. +..+.   ....+++|+.. +.+|.+-|+++++.+.++++.| +|.|
T Consensus       246 ~~~e~~~~~~~~L~~-~giD~i~vs~--~~~~~~~~~~---~~~~~~ik~~~-~~pv~~~G~~~~~~ae~~i~~G~~D~V  318 (362)
T PRK10605        246 NEEADALYLIEQLGK-RGIAYLHMSE--PDWAGGEPYS---DAFREKVRARF-HGVIIGAGAYTAEKAETLIGKGLIDAV  318 (362)
T ss_pred             CHHHHHHHHHHHHHH-cCCCEEEecc--ccccCCcccc---HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCCEE
Confidence            2222    2223321 3588887642  2221 22222   22334555554 4678898999999999999988 9999


Q ss_pred             EEcccccCCCCHHHHH
Q 031554          128 VAGSSVFGAPEPAHVI  143 (157)
Q Consensus       128 V~GSai~~~~d~~~~~  143 (157)
                      -+|+++...||+...+
T Consensus       319 ~~gR~~iadPd~~~k~  334 (362)
T PRK10605        319 AFGRDYIANPDLVARL  334 (362)
T ss_pred             EECHHhhhCccHHHHH
Confidence            9999999878765443

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=97.21  E-value=0.0087  Score=49.29  Aligned_cols=114  Identities=12%  Similarity=0.187  Sum_probs=72.7

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHHhHHhhHhcCCC--CCeEEEEeeeCCCCCc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVEEVYPLVEGANP--VEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~~~~~~~~~~~--~d~vl~m~v~pG~~gq   83 (157)
                      ++.+.+.+.|.-.+..-. ..+.- ..+.+..+..+..+++++... ...+++.++++  .+  +|.|.+-+.++     
T Consensus        52 ~LA~~a~~~G~~~~~~k~-~~e~~-~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~--ag~~~d~i~iD~a~g-----  122 (326)
T PRK05458         52 KIAEWLAENGYFYIMHRF-DPEAR-IPFIKDMHEQGLIASISVGVKDDEYDFVDQLAA--EGLTPEYITIDIAHG-----  122 (326)
T ss_pred             HHHHHHHHcCCEEEEecC-CHHHH-HHHHHhccccccEEEEEecCCHHHHHHHHHHHh--cCCCCCEEEEECCCC-----
Confidence            345566777754444331 11221 344444444467777777643 23466777774  23  49998877662     


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                       ......+-|+++|+..|+.+|.+.-=-|.+.+..+.++|||++.+|
T Consensus       123 -h~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg  168 (326)
T PRK05458        123 -HSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVG  168 (326)
T ss_pred             -chHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEEC
Confidence             2345666789999988887765522236899999999999999877

>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]

Probab=97.20  E-value=0.019  Score=44.07  Aligned_cols=72  Identities=15%  Similarity=0.266  Sum_probs=50.4

Q ss_pred             CCCCeEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~-~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      ...+.|++- +.. .+.++ +..+.+.++.++..    -++.+.|||. +|....+...|++++.+|++|++-..|-+..
T Consensus       150 ~~~~lIvLD-i~a-VGt~~G~~~E~l~~~~~~s~----~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~  223 (229)
T COG1411         150 RDPGLIVLD-IGA-VGTKSGPDYELLTKVLELSE----HPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVE  223 (229)
T ss_pred             CCCCeEEEE-ccc-cccccCCCHHHHHHHHHhcc----CceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHH
Confidence            455665542 221 12222 56677777665443    4688999999 6888888899999999999999877775544

>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated

Probab=97.20  E-value=0.0038  Score=53.88  Aligned_cols=136  Identities=12%  Similarity=0.107  Sum_probs=79.9

Q ss_pred             HHHHHHH-hCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH-HhHH-----------hhHh---cCCCCCe
Q 031554            7 DYVEPLG-KAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV-EEVY-----------PLVE---GANPVEM   70 (157)
Q Consensus         7 ~~i~~~~-~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~-~~~~-----------~~~~---~~~~~d~   70 (157)
                      .|.+.++ ..|+|.||+|.-.-.+.+..++++   .|..+-+.+..++|- ..++           .+.+   .....+.
T Consensus       105 ~yA~a~f~~~~aDAiTv~pymG~Dsl~pfl~~---~~kgvfvL~~tSNpga~~~Q~~~~~g~~ly~~v~~~~~~~~~~~~  181 (477)
T PRK05500        105 IFAKTIFEQWQVDAVTLSPYAGQDHVAPFLVY---PDKGVFILCHTSNPGAIALQEYPTPENPFYLQVVKEAKTWGTPEQ  181 (477)
T ss_pred             HHHHHHHhhcCCCEEEECCccCccchHHHHhc---CCCcEEEEEeCCCcCHHHHhhcccCCCcHHHHHHHHHHHhCCCCc
Confidence            4666666 489999999976555555777765   455554444223321 1222           1111   0011111


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCC------EEEEcccccCCCCHHHH
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGAN------CIVAGSSVFGAPEPAHV  142 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad------~vV~GSai~~~~d~~~~  142 (157)
                        ++-|.+.+     .|+.+   +++|+..|+..|.+ =||-  -.++.++..+|+|      .+.+|++|..++||.++
T Consensus       182 --~g~VvGAT-----~p~~~---~~iR~~~p~~~iL~-PGiGAQGg~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~  250 (477)
T PRK05500        182 --LGLEVGTT-----NPEVL---AKIRQIAPERLILL-RSIWAEKGNLNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQ  250 (477)
T ss_pred             --eEEEECCC-----ChHHH---HHHHHhCCCCEEEc-cccccCCCCHHHHHHhhcccCcCceEEEeCHHHhcCCCHHHH
Confidence              12222221     13444   55555556654332 2333  3457777888988      89999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 031554          143 ISLMRKSVEDAQKN  156 (157)
Q Consensus       143 ~~~l~~~~~~~~~~  156 (157)
                      ++.+++.+++.+++
T Consensus       251 a~~l~~~i~~~~~~  264 (477)
T PRK05500        251 VKSLREEINQIRQQ  264 (477)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998876653

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=97.19  E-value=0.015  Score=48.02  Aligned_cols=117  Identities=21%  Similarity=0.222  Sum_probs=84.0

Q ss_pred             HHHHHHHHhCCCCEEE--EcccCCcchHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEEEeeeCC
Q 031554            6 LDYVEPLGKAGASGFT--FHVEISKDNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLVMTVEPG   79 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~--vh~e~~~~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG   79 (157)
                      .+.++.+.++|+|.|-  +|..-.+.. .+.++++|+.|+++.+.+  .+..+.+.+.++.+.  ..++|.|.+    ..
T Consensus        91 ~~dl~~a~~~gvd~iri~~~~~e~~~~-~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i----~D  165 (337)
T PRK08195         91 VDDLKMAYDAGVRVVRVATHCTEADVS-EQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYV----VD  165 (337)
T ss_pred             HHHHHHHHHcCCCEEEEEEecchHHHH-HHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEe----CC
Confidence            3568899999999955  665544444 889999999999886644  444555554444431  146888766    46


Q ss_pred             CCCcccchhHHHHHHHHHhhC-CCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           80 FGGQKFMPEMMDKVRSLRNRY-PSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~-~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      +.|........+.++.+++.. |+++|.+    +-|....|.-..+++||+.|
T Consensus       166 T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~i  218 (337)
T PRK08195        166 SAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRI  218 (337)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEE
Confidence            667777778888899999875 5677766    45677788888889999954

>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5

Probab=97.18  E-value=0.0019  Score=51.09  Aligned_cols=129  Identities=19%  Similarity=0.281  Sum_probs=78.2

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecC-------CCCHHhHHhhHhc-CCCCCe--
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKP-------GTSVEEVYPLVEG-ANPVEM--   70 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~-------~t~~~~~~~~~~~-~~~~d~--   70 (157)
                      .+++.+.|++++.+.        .|+ ++.+..-++.+.++|+.+.+-+.-       ....+.+.+.++. +..++.  
T Consensus        77 ~~mL~d~G~~~viiGHSERR~~f~Et-d~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~  155 (244)
T PF00121_consen   77 AEMLKDLGCKYVIIGHSERRQYFGET-DEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEE  155 (244)
T ss_dssp             HHHHHHTTESEEEESCHHHHHHST-B-HHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGG
T ss_pred             HHHHHHhhCCEEEeccccccCccccc-cHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence            468899999999997        244 334478888899999999888853       1122333322210 133321  


Q ss_pred             --EEEEeeeC----CCCCcccchhH----HHHHHHH-Hhh-----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcccc
Q 031554           71 --VLVMTVEP----GFGGQKFMPEM----MDKVRSL-RNR-----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSV  133 (157)
Q Consensus        71 --vl~m~v~p----G~~gq~~~~~~----~~ki~~l-~~~-----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai  133 (157)
                        =++..-+|    |+ |+.-.++.    .+.||+. +++     ..+++|...|+++++|+.++ ...++|++-+|++-
T Consensus       156 ~~~~iIAYEPvWAIGt-G~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~as  234 (244)
T PF00121_consen  156 LKNIIIAYEPVWAIGT-GKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGAS  234 (244)
T ss_dssp             GTCEEEEEEEGGGTSS-SS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGG
T ss_pred             ccceEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhh
Confidence              12223355    43 55544443    3334443 111     23689999999999999976 57899999999998


Q ss_pred             cCCCCH
Q 031554          134 FGAPEP  139 (157)
Q Consensus       134 ~~~~d~  139 (157)
                      .+.++.
T Consensus       235 l~~~~F  240 (244)
T PF00121_consen  235 LKAESF  240 (244)
T ss_dssp             GSTHHH
T ss_pred             hcccch
Confidence            765443

3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=97.18  E-value=0.011  Score=48.88  Aligned_cols=137  Identities=15%  Similarity=0.125  Sum_probs=80.2

Q ss_pred             HHHHHHhCCCCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEEecCCCC-----------HHhHHhhHhc--CCC
Q 031554            8 YVEPLGKAGASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVALKPGTS-----------VEEVYPLVEG--ANP   67 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~l~~~t~-----------~~~~~~~~~~--~~~   67 (157)
                      -++.+...|||.|.+|.-.-.+       .+.++.++++++|+-+.+.+.|.-+           .+.+.....+  --+
T Consensus       151 sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG  230 (348)
T PRK09250        151 SVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG  230 (348)
T ss_pred             cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc
Confidence            3788999999999999533221       1255667888899877664543321           2222211111  027


Q ss_pred             CCeEEEEeeeCCCCCcccc-----------------hhHHHHHHHHHhhCC--CCcEEEEcCCCH------hhHHHH---
Q 031554           68 VEMVLVMTVEPGFGGQKFM-----------------PEMMDKVRSLRNRYP--SLDIEVDGGLGP------STIAEA---  119 (157)
Q Consensus        68 ~d~vl~m~v~pG~~gq~~~-----------------~~~~~ki~~l~~~~~--~~~I~vdGGI~~------~~i~~~---  119 (157)
                      .|+|=+-  .||.. ..|.                 ....++++.+-+-+.  ..++.+.||=+.      +.+...   
T Consensus       231 ADIVKv~--yp~~~-~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~  307 (348)
T PRK09250        231 ADIIKQK--LPTNN-GGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVIN  307 (348)
T ss_pred             CCEEEec--CCCCh-hhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            7887431  23311 1111                 123344555544432  578999999883      334556   


Q ss_pred             HHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554          120 ASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus       120 ~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      .++||.++++|+-+|+.++++ +++.+++
T Consensus       308 i~aGa~Gv~iGRNIfQ~~~~e-a~~~~~~  335 (348)
T PRK09250        308 KRAGGMGLIIGRKAFQRPMAE-GVKLLNA  335 (348)
T ss_pred             hhcCCcchhhchhhhcCCcHH-HHHHHHH
Confidence            778999999999999987653 3433333

>PRK05265 pyridoxine 5'-phosphate synthase; Provisional

Probab=97.16  E-value=0.0092  Score=46.88  Aligned_cols=120  Identities=17%  Similarity=0.220  Sum_probs=73.7

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      +|......+.++|||+||+|......-| .+-+..+++. ..+.=+.+.|....  +.-.++  -++|.|.+.   |-..
T Consensus        25 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~~~em--~~ia~~--~kP~~vtLV---PE~r   97 (239)
T PRK05265         25 DPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKTELNLEMAATEEM--LDIALE--VKPHQVTLV---PEKR   97 (239)
T ss_pred             CHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHH--HHHHHH--CCCCEEEEC---CCCC
Confidence            6788889999999999999976533221 3344444443 44555566543332  222232  368999775   5433


Q ss_pred             Ccccchh---------HHH-HHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           82 GQKFMPE---------MMD-KVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        82 gq~~~~~---------~~~-ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      .+...+.         .++ -++++++..-.+.+-+|  -+++.+....+.|||.|=+=+.
T Consensus        98 ~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VELhTG  156 (239)
T PRK05265         98 EELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIELHTG  156 (239)
T ss_pred             CCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEech
Confidence            3333222         222 25555555434556676  6789999999999999876544

>PRK15452 putative protease; Provisional

Probab=97.16  E-value=0.025  Score=48.50  Aligned_cols=113  Identities=12%  Similarity=0.126  Sum_probs=78.0

Q ss_pred             HHHHHHHhCCCCEEEEcccCC----------cchHHHHHHHHHHcCCceEEEecCCCCH---HhHHhhHh-c-CCCCCeE
Q 031554            7 DYVEPLGKAGASGFTFHVEIS----------KDNWQELVQRIKSKGMRPGVALKPGTSV---EEVYPLVE-G-ANPVEMV   71 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~----------~~~~~~~i~~ir~~g~~~gl~l~~~t~~---~~~~~~~~-~-~~~~d~v   71 (157)
                      .-++.+.++|||.|.+..+..          .+.+.+.++.++++|+++-+++|.-..-   +.+.++++ + .-++|.|
T Consensus        14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgv   93 (443)
T PRK15452         14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDAL   93 (443)
T ss_pred             HHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEE
Confidence            356788899999999965421          1234778899999999999998743322   33333332 1 1357888


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH---hhHHHHHHcCCCEEEEcccc
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP---STIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~---~~i~~~~~~Gad~vV~GSai  133 (157)
                      ++-  +||            -+..+++..|++++.+|-..|.   ..+.-+.+.|++.+++.+-+
T Consensus        94 IV~--d~G------------~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL  144 (443)
T PRK15452         94 IMS--DPG------------LIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL  144 (443)
T ss_pred             EEc--CHH------------HHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence            763  232            3455556678899999998874   55667899999999988755

>PRK08185 hypothetical protein; Provisional

Probab=97.11  E-value=0.065  Score=43.33  Aligned_cols=124  Identities=19%  Similarity=0.193  Sum_probs=83.2

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc-----hHHHHHHHHHHcCCce----EEEecC-------------CCCHHhHHhhHh
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD-----NWQELVQRIKSKGMRP----GVALKP-------------GTSVEEVYPLVE   63 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~-----~~~~~i~~ir~~g~~~----gl~l~~-------------~t~~~~~~~~~~   63 (157)
                      ...++.+.+.|.+.|.+=.-..+.     ...++.+.++.+|+.+    |. +..             -|+.+.+.++.+
T Consensus        81 ~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~peea~~f~~  159 (283)
T PRK08185         81 IEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQAEDFVS  159 (283)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcccccccccccccCCCHHHHHHHHH
Confidence            457888899999887775332221     1144556667777654    33 211             346666777775


Q ss_pred             cCCCCCeEEE-----EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCEEEEcccccC
Q 031554           64 GANPVEMVLV-----MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        64 ~~~~~d~vl~-----m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      . -++|++.+     .++.++.. .+-  -.+++++++++.. +++++.=||++  .++++++++.|+.-|=+++.+..
T Consensus       160 ~-TgvD~LAvaiGt~HG~y~~~~-kp~--L~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~  233 (283)
T PRK08185        160 R-TGVDTLAVAIGTAHGIYPKDK-KPE--LQMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKY  233 (283)
T ss_pred             h-hCCCEEEeccCcccCCcCCCC-CCC--cCHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence            3 37999987     44444311 111  2377888888764 79999999987  59999999999999999998753

>PLN02535 glycolate oxidase

Probab=97.09  E-value=0.019  Score=48.00  Aligned_cols=96  Identities=17%  Similarity=0.272  Sum_probs=63.8

Q ss_pred             HHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcC
Q 031554           33 ELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGG  110 (157)
Q Consensus        33 ~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGG  110 (157)
                      +.++++|+. +..+.+- .. .+.+.++...+  .++|.|.+-  +.|.....+.+.++.-+.++++.. .+++|.+|||
T Consensus       213 ~~i~~lr~~~~~PvivK-gV-~~~~dA~~a~~--~GvD~I~vs--n~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGG  286 (364)
T PLN02535        213 KDIEWLRSITNLPILIK-GV-LTREDAIKAVE--VGVAGIIVS--NHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGG  286 (364)
T ss_pred             HHHHHHHhccCCCEEEe-cC-CCHHHHHHHHh--cCCCEEEEe--CCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCC
Confidence            556777775 3333332 11 34455555554  589999763  223111123345677777777653 4699999999


Q ss_pred             CC-HhhHHHHHHcCCCEEEEccccc
Q 031554          111 LG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       111 I~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      |+ ..++...+..|||.+.+|++++
T Consensus       287 Ir~g~Dv~KALalGA~aV~vGr~~l  311 (364)
T PLN02535        287 VRRGTDVFKALALGAQAVLVGRPVI  311 (364)
T ss_pred             CCCHHHHHHHHHcCCCEEEECHHHH
Confidence            99 6899999999999999999865

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=97.09  E-value=0.0099  Score=49.14  Aligned_cols=127  Identities=15%  Similarity=0.223  Sum_probs=79.0

Q ss_pred             HHHHhCCCCEEEEccc---------CC------c----------chHHHHHHHHHHc-CC--ceEEEecCCC------CH
Q 031554           10 EPLGKAGASGFTFHVE---------IS------K----------DNWQELVQRIKSK-GM--RPGVALKPGT------SV   55 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e---------~~------~----------~~~~~~i~~ir~~-g~--~~gl~l~~~t------~~   55 (157)
                      ..+.++|+|.|-+|.-         ++      |          ..+.++++.+|+. |.  .+++=+++..      +.
T Consensus       148 ~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~  227 (343)
T cd04734         148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSP  227 (343)
T ss_pred             HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCH
Confidence            4557799999999972         11      0          1225788999986 54  3566566543      22


Q ss_pred             HhH---HhhHhcCCC-CCeEEEEeeeCCCCCc-----------ccch-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHH
Q 031554           56 EEV---YPLVEGANP-VEMVLVMTVEPGFGGQ-----------KFMP-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE  118 (157)
Q Consensus        56 ~~~---~~~~~~~~~-~d~vl~m~v~pG~~gq-----------~~~~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~  118 (157)
                      +..   .+.++- .+ +|+|-+-   -|...+           .+.+ ..++-++++++.. +++|.+-|||+ ++.+.+
T Consensus       228 ~e~~~~~~~l~~-~G~vd~i~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~ipvi~~G~i~~~~~~~~  302 (343)
T cd04734         228 DEALEIAARLAA-EGLIDYVNVS---AGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV-DLPVFHAGRIRDPAEAEQ  302 (343)
T ss_pred             HHHHHHHHHHHh-cCCCCEEEeC---CCCCCcccccccccCCCCCCcchhHHHHHHHHHHc-CCCEEeeCCCCCHHHHHH
Confidence            222   222321 23 7888662   111110           0111 1245556666654 68899999995 799998


Q ss_pred             HHHcC-CCEEEEcccccCCCCHHH
Q 031554          119 AASAG-ANCIVAGSSVFGAPEPAH  141 (157)
Q Consensus       119 ~~~~G-ad~vV~GSai~~~~d~~~  141 (157)
                      +++.| +|.|-+|+.+...|++-.
T Consensus       303 ~l~~~~~D~V~~gR~~ladP~l~~  326 (343)
T cd04734         303 ALAAGHADMVGMTRAHIADPHLVA  326 (343)
T ss_pred             HHHcCCCCeeeecHHhHhCccHHH
Confidence            88765 999999999998787643

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>PRK15447 putative protease; Provisional

Probab=97.09  E-value=0.022  Score=46.24  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=78.9

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccC-------CcchHHHHHHHHHHcCCceEEEecCC----CCHHhHHhhHhcCCCCCeE
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEI-------SKDNWQELVQRIKSKGMRPGVALKPG----TSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~-------~~~~~~~~i~~ir~~g~~~gl~l~~~----t~~~~~~~~~~~~~~~d~v   71 (157)
                      .+.+.|...+.+.|||.|.+..+.       ..+.+.+.++.++++|+++.++++.=    ...+.+.++++  ..+|.|
T Consensus        15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~--~~~~~v   92 (301)
T PRK15447         15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVE--NGEFLV   92 (301)
T ss_pred             CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHh--cCCCEE
Confidence            467889999999999999998442       22344889999999999999987542    12345666664  244555


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH---hhHHHHHHcCCCEEEEccccc
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP---STIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~---~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ++-  ++         ..+..++   +  .++++.+|-.+|.   ..+..+.+.|++.+++..-+-
T Consensus        93 ~v~--d~---------g~l~~~~---e--~~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELs  142 (301)
T PRK15447         93 EAN--DL---------GAVRLLA---E--RGLPFVAGPALNCYNAATLALLARLGATRWCMPVELS  142 (301)
T ss_pred             EEe--CH---------HHHHHHH---h--cCCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCC
Confidence            431  22         2343333   3  2678999999874   666778999999998876543

>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]

Probab=97.08  E-value=0.018  Score=44.77  Aligned_cols=134  Identities=22%  Similarity=0.267  Sum_probs=88.9

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      +|.... .+...|||.|.+-.....+ .+...++.++..|+.+-+.+|   +-+.....+++  ++..|   +++-- .=
T Consensus       148 d~~QI~-~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn---~~eEm~ralei--Gakvv---GvNNR-nL  217 (289)
T KOG4201|consen  148 DPYQIY-EARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVN---DEEEMQRALEI--GAKVV---GVNNR-NL  217 (289)
T ss_pred             CHHHHH-HHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeec---cHHHHHHHHHh--CcEEE---eecCC-cc
Confidence            455433 4567799999887554443 337788899999999988886   44555555543  44444   44421 11


Q ss_pred             cccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           83 QKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      .+|. -.+..-+++-+.. .++.+..--||. ++++..+.++|+..+.+|-++.++.||+..+.+|..
T Consensus       218 ~sFe-VDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~~  284 (289)
T KOG4201|consen  218 HSFE-VDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELFG  284 (289)
T ss_pred             ceee-echhhHHHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHhc
Confidence            2221 1122223333333 356666667776 899999999999999999999999999999988753

>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=97.08  E-value=0.0029  Score=49.70  Aligned_cols=139  Identities=16%  Similarity=0.234  Sum_probs=85.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      ..+++.+.+..+|.||+-.|..++              .+..+++.+++.|+++.+++.|+.  +.++.-.+  -++|.|
T Consensus        74 ~e~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~~--~qi~~A~~--~Gad~V  149 (239)
T PF03740_consen   74 EEMVDIALKVKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPDP--EQIEAAKE--LGADRV  149 (239)
T ss_dssp             HHHHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-H--HHHHHHHH--TT-SEE
T ss_pred             HHHHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCCH--HHHHHHHH--cCCCEE
Confidence            458889999999999999776532              337899999999999999998763  33333332  389999


Q ss_pred             EEEeeeCCCCCcccch------hHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccCCC---CH
Q 031554           72 LVMTVEPGFGGQKFMP------EMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAP---EP  139 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~------~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~~~---d~  139 (157)
                      -+.|-.   ....|..      +.++++....+.  ..++.+.+..|+|.+|+..+.+. +..-+-+|-+|+...   -.
T Consensus       150 ELhTG~---yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~VnAGHgL~y~N~~~i~~i~~i~EvnIGHaiia~Al~~Gl  226 (239)
T PF03740_consen  150 ELHTGP---YANAFDDAEEAEEELLERLRDAARYAHELGLGVNAGHGLNYDNVRPIAAIPPIEEVNIGHAIIARALFVGL  226 (239)
T ss_dssp             EEETHH---HHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEEEETT--TTTHHHHHTSTTEEEEEE-HHHHHHHHHH-H
T ss_pred             EEehhH---hhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCceEEecCHHHHHHHHHHhH
Confidence            886432   2223311      124555555443  25799999999999999987554 466788897776421   34


Q ss_pred             HHHHHHHHHHHH
Q 031554          140 AHVISLMRKSVE  151 (157)
Q Consensus       140 ~~~~~~l~~~~~  151 (157)
                      .+++++++++++
T Consensus       227 ~~aV~~m~~~~~  238 (239)
T PF03740_consen  227 EEAVREMKELMK  238 (239)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            677777777654

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.08  E-value=0.0038  Score=54.15  Aligned_cols=81  Identities=22%  Similarity=0.375  Sum_probs=60.4

Q ss_pred             CCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHH
Q 031554           42 GMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA  120 (157)
Q Consensus        42 g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~  120 (157)
                      ..++|.+++.. ...+.+..+.+  .++|.|.+-+.+    |  ..+..++.|+++|+.+|+++|.+....|.+.+..+.
T Consensus       229 rL~Vgaavg~~~~~~~~~~~l~~--ag~d~i~id~a~----G--~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~  300 (495)
T PTZ00314        229 QLLVGAAISTRPEDIERAAALIE--AGVDVLVVDSSQ----G--NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLI  300 (495)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC----C--CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHH
Confidence            34577888643 23567777776  589998774332    2  223457889999998888999887777799999999


Q ss_pred             HcCCCEEEEc
Q 031554          121 SAGANCIVAG  130 (157)
Q Consensus       121 ~~Gad~vV~G  130 (157)
                      ++|||.+.+|
T Consensus       301 ~aGad~I~vg  310 (495)
T PTZ00314        301 DAGADGLRIG  310 (495)
T ss_pred             HcCCCEEEEC
Confidence            9999999875

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=97.08  E-value=0.043  Score=43.23  Aligned_cols=124  Identities=20%  Similarity=0.252  Sum_probs=77.3

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCC----c------chHHHHHHHHHHcCCceEEE--ecC-------CCCHHh-HHhhHh
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEIS----K------DNWQELVQRIKSKGMRPGVA--LKP-------GTSVEE-VYPLVE   63 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~----~------~~~~~~i~~ir~~g~~~gl~--l~~-------~t~~~~-~~~~~~   63 (157)
                      ++..-+..+...|||+|-+..-+.    +      +. .+++++-+..+.++-+.  +.+       +.+++. ++.-++
T Consensus        96 d~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A-~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtve  174 (263)
T COG0434          96 DAVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNA-AELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVE  174 (263)
T ss_pred             ccHHHHHHHHhcCCCEEEEEeeeceEecccceecchH-HHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHH
Confidence            344556667788999998663111    1      22 45555555556444332  221       124433 333233


Q ss_pred             cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554           64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      - ..+|.|++-+-..   |..   ..++.++.+++.. +.++.|.-|++++|+.++.+. ||++|+||++-+..
T Consensus       175 r-~~aDaVI~tG~~T---G~~---~d~~el~~a~~~~-~~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~~G  239 (263)
T COG0434         175 R-GLADAVIVTGSRT---GSP---PDLEELKLAKEAV-DTPVLVGSGVNPENIEELLKI-ADGVIVGTSLKKGG  239 (263)
T ss_pred             c-cCCCEEEEecccC---CCC---CCHHHHHHHHhcc-CCCEEEecCCCHHHHHHHHHH-cCceEEEEEEccCC
Confidence            3 6789998753332   222   2344556555554 489999999999999999998 99999999987643

>PRK08662 nicotinate phosphoribosyltransferase; Reviewed

Probab=97.03  E-value=0.0098  Score=49.30  Aligned_cols=101  Identities=21%  Similarity=0.209  Sum_probs=62.4

Q ss_pred             HHHHHHHHHc---CCceEEEecCC-CCHHhHHhhHhc-CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh-h-CCCCc
Q 031554           32 QELVQRIKSK---GMRPGVALKPG-TSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN-R-YPSLD  104 (157)
Q Consensus        32 ~~~i~~ir~~---g~~~gl~l~~~-t~~~~~~~~~~~-~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~-~-~~~~~  104 (157)
                      ...++..++.   ..++-+.+..- +.++.+.+..+. ...+|.|++-+..|..+   ...+..+++++..+ . .+++.
T Consensus       187 ~~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~~g---~l~~~v~~vr~~ld~~g~~~v~  263 (343)
T PRK08662        187 VEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSRRG---NFRKIVREVRWTLDIRGYEHVK  263 (343)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCCCc---cHHHHHHHHHHHHHhcCCCCeE
Confidence            5667777764   23344444332 344433333210 02689998865443111   12344455554432 2 25688


Q ss_pred             EEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          105 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       105 I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      |++-||||++|+.++.+. +|++-+||.++.+
T Consensus       264 IeaSGgI~~~ni~~ya~~-vD~isvGs~~~~a  294 (343)
T PRK08662        264 IFVSGGLDPERIRELRDV-VDGFGVGTYISFA  294 (343)
T ss_pred             EEEeCCCCHHHHHHHHHh-CCEEEcCccccCC
Confidence            999999999999999999 9999999998864

>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=97.02  E-value=0.011  Score=48.88  Aligned_cols=103  Identities=15%  Similarity=0.249  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHc-CCceEEEecCCC----CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc
Q 031554           30 NWQELVQRIKSK-GMRPGVALKPGT----SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD  104 (157)
Q Consensus        30 ~~~~~i~~ir~~-g~~~gl~l~~~t----~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~  104 (157)
                      .+.+.++.+++. +..+-+=|....    .++.++. ++. .+++++.+.+..+-..|....+..++.|+.+++..++++
T Consensus       128 Lv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~-~e~-aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ip  205 (358)
T KOG2335|consen  128 LVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKM-LED-AGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIP  205 (358)
T ss_pred             HHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHH-HHh-CCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCc
Confidence            337778888775 444333232223    3333332 223 688888887777666666677888999999999988899


Q ss_pred             EEEEcCCC-HhhHHHHHH-cCCCEEEEccccc
Q 031554          105 IEVDGGLG-PSTIAEAAS-AGANCIVAGSSVF  134 (157)
Q Consensus       105 I~vdGGI~-~~~i~~~~~-~Gad~vV~GSai~  134 (157)
                      +.+-|+|. .+.+..+.+ .|||+|-+|.++.
T Consensus       206 viaNGnI~~~~d~~~~~~~tG~dGVM~arglL  237 (358)
T KOG2335|consen  206 VIANGNILSLEDVERCLKYTGADGVMSARGLL  237 (358)
T ss_pred             EEeeCCcCcHHHHHHHHHHhCCceEEecchhh
Confidence            99999999 688888777 9999999997644

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=97.01  E-value=0.015  Score=48.90  Aligned_cols=97  Identities=16%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEc
Q 031554           32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdG  109 (157)
                      -+.++++|+. +..+.+-  --...+.++...+  .++|.|.+-  +.|.......+..+.-+.++++.. .+++|.+||
T Consensus       242 W~~i~~lr~~~~~pvivK--gV~~~~dA~~a~~--~G~d~I~vs--nhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dG  315 (383)
T cd03332         242 WEDLAFLREWTDLPIVLK--GILHPDDARRAVE--AGVDGVVVS--NHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDS  315 (383)
T ss_pred             HHHHHHHHHhcCCCEEEe--cCCCHHHHHHHHH--CCCCEEEEc--CCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeC
Confidence            3678888886 5444332  2255666666665  589999873  333222222344677777777654 469999999


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          110 GLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ||+ ..++......|||.+-+|+.+.
T Consensus       316 GIr~G~Dv~KALaLGA~~v~iGr~~l  341 (383)
T cd03332         316 GVRTGADIMKALALGAKAVLIGRPYA  341 (383)
T ss_pred             CcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            999 5888888999999999998754

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD

Probab=97.00  E-value=0.012  Score=47.11  Aligned_cols=96  Identities=18%  Similarity=0.249  Sum_probs=60.2

Q ss_pred             HHHHHHHHcCC---ceEEEecCCCCHHhHHhhHhcCCC-CCeEEEEeeeCCCCCcccchhHHHHHHH---HHhh-CCCCc
Q 031554           33 ELVQRIKSKGM---RPGVALKPGTSVEEVYPLVEGANP-VEMVLVMTVEPGFGGQKFMPEMMDKVRS---LRNR-YPSLD  104 (157)
Q Consensus        33 ~~i~~ir~~g~---~~gl~l~~~t~~~~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~---l~~~-~~~~~  104 (157)
                      +.++.+++.--   ..-+.+...+ ++...+..+  .. +|.|.+-+..|.     ........++.   +... .+++.
T Consensus       170 ~a~~~~~~~~~~~~~~~idve~~~-~~~~~~~~~--~~~~d~irlDs~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  241 (281)
T cd00516         170 AAVKALRRWLPELFIALIDVEVDT-LEEALEAAK--AGGADGIRLDSGSPE-----ELDPAVLILKARAHLDGKGLPRVK  241 (281)
T ss_pred             HHHHHHHHhCCCCceEEEEEEeCC-HHHHHHHHh--cCCCCEEEeCCCChH-----HHHHHHHHHHHHHhhhhcCCCceE
Confidence            56666666532   2334555455 655555554  45 888877543331     01111111111   1111 25788


Q ss_pred             EEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          105 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       105 I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      |++-|||++++++.+.+.|+|.+.+|+.+++.
T Consensus       242 i~~Sggi~~~~i~~~~~~gvd~~gvG~~~~~~  273 (281)
T cd00516         242 IEASGGLDEENIRAYAETGVDVFGVGTLLHSA  273 (281)
T ss_pred             EEEeCCCCHHHHHHHHHcCCCEEEeCcccccC
Confidence            99999999999999999999999999999875

QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=97.00  E-value=0.023  Score=45.34  Aligned_cols=117  Identities=20%  Similarity=0.220  Sum_probs=82.9

Q ss_pred             HHHHHHHHhCCCCEEEEc--ccCCcchHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEEEeeeCC
Q 031554            6 LDYVEPLGKAGASGFTFH--VEISKDNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLVMTVEPG   79 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh--~e~~~~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG   79 (157)
                      ...++.+.++|+|.|.+-  ....+.. .+.++++|++|.++.+.+  ...++.+.+.++.+.  -.++|.|.+    +.
T Consensus        85 ~~~l~~a~~~gv~~iri~~~~~~~~~~-~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l----~D  159 (266)
T cd07944          85 IDLLEPASGSVVDMIRVAFHKHEFDEA-LPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI----VD  159 (266)
T ss_pred             HHHHHHHhcCCcCEEEEecccccHHHH-HHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE----ec
Confidence            467888899999985554  4433344 788999999999876654  334566655555431  136788766    56


Q ss_pred             CCCcccchhHHHHHHHHHhhCC-CCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYP-SLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~-~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      +.|........+.++.+++..+ +++|.+    |-|....|.-...++||+.|
T Consensus       160 T~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~v  212 (266)
T cd07944         160 SFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEII  212 (266)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEE
Confidence            6677777778888999988754 377765    56777788888889999875

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=96.99  E-value=0.018  Score=48.17  Aligned_cols=112  Identities=19%  Similarity=0.261  Sum_probs=69.7

Q ss_pred             HHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc-chhHHHHHHHHHhhC-CCCcEEEEc
Q 031554           33 ELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRY-PSLDIEVDG  109 (157)
Q Consensus        33 ~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-~~~~~~ki~~l~~~~-~~~~I~vdG  109 (157)
                      +.++++++. +..+.  +.--...+.++...+  .++|.|.+ +.+.|  .|.. .+..++-+.++++.. .+++|.+||
T Consensus       218 ~~i~~l~~~~~~Pvi--vKGv~~~eda~~a~~--~Gvd~I~V-S~HGG--rq~~~~~a~~~~L~ei~~av~~~i~vi~dG  290 (367)
T TIGR02708       218 RDIEEIAGYSGLPVY--VKGPQCPEDADRALK--AGASGIWV-TNHGG--RQLDGGPAAFDSLQEVAEAVDKRVPIVFDS  290 (367)
T ss_pred             HHHHHHHHhcCCCEE--EeCCCCHHHHHHHHH--cCcCEEEE-CCcCc--cCCCCCCcHHHHHHHHHHHhCCCCcEEeeC
Confidence            457777775 33332  222223555555555  58998876 45543  2222 234566777777654 469999999


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEccccc-C--C---CCHHHHHHHHHHHHH
Q 031554          110 GLG-PSTIAEAASAGANCIVAGSSVF-G--A---PEPAHVISLMRKSVE  151 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GSai~-~--~---~d~~~~~~~l~~~~~  151 (157)
                      ||+ ..++......|||.+-+|+.+. .  .   +-....++.|++.++
T Consensus       291 GIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~  339 (367)
T TIGR02708       291 GVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELK  339 (367)
T ss_pred             CcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            999 5788887889999999998743 2  1   223345555555444

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.99  E-value=0.02  Score=49.46  Aligned_cols=68  Identities=19%  Similarity=0.308  Sum_probs=55.7

Q ss_pred             HHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           55 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        55 ~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      .+.++.+.+  .++|.|.+-+.+ |.     ....++.++++|+.++++++.++.+.|.+.+..+.++|||+|-+|
T Consensus       227 ~~ra~~Lv~--aGVd~i~~D~a~-g~-----~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg  294 (475)
T TIGR01303       227 GGKAKALLD--AGVDVLVIDTAH-GH-----QVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVG  294 (475)
T ss_pred             HHHHHHHHH--hCCCEEEEeCCC-CC-----cHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEEC
Confidence            356667765  589999887666 32     246778899999988999999988999999999999999999765

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase

Probab=96.97  E-value=0.018  Score=45.25  Aligned_cols=141  Identities=20%  Similarity=0.215  Sum_probs=80.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      +|......+.++|||+||+|......-| .+-+..+++. ..+.=+.+.|....  +.-.++  -++|.|.+.   |-..
T Consensus        22 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNlE~a~~~em--i~ia~~--vkP~~vtLV---PEkr   94 (237)
T TIGR00559        22 DPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNIEMAPTEEM--IRIAEE--IKPEQVTLV---PEAR   94 (237)
T ss_pred             CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHH--HHHHHH--cCCCEEEEC---CCCC
Confidence            6788888999999999999976543221 3444455553 44666666554333  222232  368999775   5433


Q ss_pred             Ccccchh---------HHH-HHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC-C---CCHHHHHHHHH
Q 031554           82 GQKFMPE---------MMD-KVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG-A---PEPAHVISLMR  147 (157)
Q Consensus        82 gq~~~~~---------~~~-ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~-~---~d~~~~~~~l~  147 (157)
                      .+...+.         .+. -++++++..-.+.+-+|-  .++.+....+.|||.|=+=+.=|. +   ....+.+..++
T Consensus        95 ~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP--~~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~  172 (237)
T TIGR00559        95 DEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA--DKDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIV  172 (237)
T ss_pred             CCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHH
Confidence            3332222         122 255555543334455554  378899999999999876544332 1   12233455555


Q ss_pred             HHHHHH
Q 031554          148 KSVEDA  153 (157)
Q Consensus       148 ~~~~~~  153 (157)
                      ...+.+
T Consensus       173 ~aa~~A  178 (237)
T TIGR00559       173 KASVHA  178 (237)
T ss_pred             HHHHHH
Confidence            544443

PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=96.96  E-value=0.038  Score=44.33  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=83.8

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEec-----C---CCCHHhHHhhHh
Q 031554            7 DYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALK-----P---GTSVEEVYPLVE   63 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~-----~---~t~~~~~~~~~~   63 (157)
                      +-++.+.++|+|.+.+..-.++               +.+.+.++++|++|..+.+.+.     |   .++.+.+.++.+
T Consensus        77 ~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~  156 (274)
T cd07938          77 RGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAE  156 (274)
T ss_pred             HHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHH
Confidence            3588999999999988865554               1225678899999998865432     1   234444433332


Q ss_pred             c--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           64 G--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        64 ~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                      .  -.++|.|.+    +.+.|........+.++.+++..++++|.+    |-|.-..|.-...++|||.|=
T Consensus       157 ~~~~~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id  223 (274)
T cd07938         157 RLLDLGCDEISL----GDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFD  223 (274)
T ss_pred             HHHHcCCCEEEE----CCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence            1  146887766    566777767778888999998877777776    567888888888999999763

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=96.96  E-value=0.009  Score=51.95  Aligned_cols=80  Identities=19%  Similarity=0.293  Sum_probs=61.2

Q ss_pred             CceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH
Q 031554           43 MRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS  121 (157)
Q Consensus        43 ~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~  121 (157)
                      .++|.++.+. ...++++.+++  .++|.|.+-+.+    |  .....++.|+++|+.+|+..|.+.+=.|.+.+..+.+
T Consensus       237 l~vgaavg~~~~~~~r~~~l~~--ag~d~i~iD~~~----g--~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~  308 (505)
T PLN02274        237 LLVGAAIGTRESDKERLEHLVK--AGVDVVVLDSSQ----G--DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ  308 (505)
T ss_pred             EEEEEEEcCCccHHHHHHHHHH--cCCCEEEEeCCC----C--CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH
Confidence            4578888764 45678888886  589999886532    2  2335678899999988888775555556899999999


Q ss_pred             cCCCEEEEc
Q 031554          122 AGANCIVAG  130 (157)
Q Consensus       122 ~Gad~vV~G  130 (157)
                      +|||++++|
T Consensus       309 aGaD~i~vg  317 (505)
T PLN02274        309 AGVDGLRVG  317 (505)
T ss_pred             cCcCEEEEC
Confidence            999999886

>PRK06256 biotin synthase; Validated

Probab=96.95  E-value=0.071  Score=43.64  Aligned_cols=141  Identities=17%  Similarity=0.263  Sum_probs=86.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc---------h---HHHHHHHHHHcCCceEE--EecCCCCHHhHHhhHhc--CCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD---------N---WQELVQRIKSKGMRPGV--ALKPGTSVEEVYPLVEG--ANPVE   69 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~---------~---~~~~i~~ir~~g~~~gl--~l~~~t~~~~~~~~~~~--~~~~d   69 (157)
                      .+.++.+.++|++.+++..|+.++         .   ..+.++.+++.|+.+..  .+......+.+.+.+..  .-++|
T Consensus       152 ~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~  231 (336)
T PRK06256        152 EEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDAD  231 (336)
T ss_pred             HHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCC
Confidence            356788999999999988776321         1   13577778888887643  34344444333333221  13677


Q ss_pred             eEEEEeee--CCCCCc--cc--chhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHH-HHHHcCCCEEEEcccccCCCC-H
Q 031554           70 MVLVMTVE--PGFGGQ--KF--MPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIA-EAASAGANCIVAGSSVFGAPE-P  139 (157)
Q Consensus        70 ~vl~m~v~--pG~~gq--~~--~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~-~~~~~Gad~vV~GSai~~~~d-~  139 (157)
                      .|.+....  ||+.-+  ..  ..+.++.+.-+|-..|+..|.+.||=.  ..+.. ... +|||.+++|-++..... +
T Consensus       232 ~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~~lt~~g~~~  310 (336)
T PRK06256        232 SIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGNYLTTVGQPA  310 (336)
T ss_pred             EEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECCcccCCCCCh
Confidence            77665444  564321  11  234566677667778999999999963  33333 334 69999999999986543 4


Q ss_pred             HHHHHHHH
Q 031554          140 AHVISLMR  147 (157)
Q Consensus       140 ~~~~~~l~  147 (157)
                      .+-++-++
T Consensus       311 ~~d~~~~~  318 (336)
T PRK06256        311 TADLDMIE  318 (336)
T ss_pred             HHHHHHHH
Confidence            44444443

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=96.95  E-value=0.019  Score=47.98  Aligned_cols=133  Identities=16%  Similarity=0.115  Sum_probs=80.1

Q ss_pred             HHHHhCCCCEEEEcccC---------Cc----------------chHHHHHHHHHHc-CC--ceEEEecCCC--------
Q 031554           10 EPLGKAGASGFTFHVEI---------SK----------------DNWQELVQRIKSK-GM--RPGVALKPGT--------   53 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---------~~----------------~~~~~~i~~ir~~-g~--~~gl~l~~~t--------   53 (157)
                      ..+.++|+|+|-+|.-.         +.                ..+.++++.+|+. |.  .+++=+++..        
T Consensus       157 ~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~  236 (370)
T cd02929         157 LRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIE  236 (370)
T ss_pred             HHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCC
Confidence            45577899999999543         10                1125788999986 54  4566566533        


Q ss_pred             CHHhHHhhHhc-CCCCCeEEEEeeeC---CCCCcccch-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCE
Q 031554           54 SVEEVYPLVEG-ANPVEMVLVMTVEP---GFGGQKFMP-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANC  126 (157)
Q Consensus        54 ~~~~~~~~~~~-~~~~d~vl~m~v~p---G~~gq~~~~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~  126 (157)
                      ..+...++.+. -..+|++-+-.-..   +...+.+.+ ..++..+++|+.. ++++.+-|||+ ++.+.++++.| +|.
T Consensus       237 ~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi~~G~i~~~~~~~~~l~~g~~D~  315 (370)
T cd02929         237 SEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT-SKPVVGVGRFTSPDKMVEVVKSGILDL  315 (370)
T ss_pred             CHHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHcCCCCe
Confidence            23322222211 03467765432111   111111111 1244456666653 67888999996 79999998877 999


Q ss_pred             EEEcccccCCCCHHHHH
Q 031554          127 IVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       127 vV~GSai~~~~d~~~~~  143 (157)
                      |.+|+++...|++-..+
T Consensus       316 V~~gR~~ladP~l~~k~  332 (370)
T cd02929         316 IGAARPSIADPFLPKKI  332 (370)
T ss_pred             eeechHhhhCchHHHHH
Confidence            99999999878764433

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.051  Score=44.68  Aligned_cols=133  Identities=17%  Similarity=0.280  Sum_probs=85.4

Q ss_pred             cChHHHH---HHHHhCCCCEEEEcccCC----------------cchHHHHHHHHHHcC--CceEEEecCCC--C---HH
Q 031554            3 TNPLDYV---EPLGKAGASGFTFHVEIS----------------KDNWQELVQRIKSKG--MRPGVALKPGT--S---VE   56 (157)
Q Consensus         3 ~~p~~~i---~~~~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~g--~~~gl~l~~~t--~---~~   56 (157)
                      ++|....   ..+.+.|+|.|-+-.-.+                .+.+.+.++++++..  +.+-+=+-...  +   ..
T Consensus        76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~  155 (323)
T COG0042          76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILAL  155 (323)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHH
Confidence            3564443   334677888877653222                123478888888875  33333222111  1   22


Q ss_pred             hHHhhHhcCCCCCeEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH-cCCCEEEEcccc
Q 031554           57 EVYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS-AGANCIVAGSSV  133 (157)
Q Consensus        57 ~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~-~Gad~vV~GSai  133 (157)
                      .+...++- .+++.+.+.+..   ..|.+. +..++.|+++++..++++|.+-|+|. .+++.++.+ .|+|++.+|++.
T Consensus       156 ~ia~~~~~-~g~~~ltVHgRt---r~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga  231 (323)
T COG0042         156 EIARILED-AGADALTVHGRT---RAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA  231 (323)
T ss_pred             HHHHHHHh-cCCCEEEEeccc---HHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHH
Confidence            34444433 578888665443   333332 25788999999998779999999995 799988766 679999999998


Q ss_pred             cCCCCH
Q 031554          134 FGAPEP  139 (157)
Q Consensus       134 ~~~~d~  139 (157)
                      ++.|..
T Consensus       232 ~~nP~l  237 (323)
T COG0042         232 LGNPWL  237 (323)
T ss_pred             ccCCcH
Confidence            876654

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=96.92  E-value=0.026  Score=45.01  Aligned_cols=116  Identities=22%  Similarity=0.239  Sum_probs=81.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccC----------------CcchHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--C
Q 031554            6 LDYVEPLGKAGASGFTFHVEI----------------SKDNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--A   65 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~----------------~~~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~   65 (157)
                      .+-++.+.++|+|.|.+..-.                .+.. .+.++++|++|.++.+.+  ...+|.+.+.++.+.  -
T Consensus        74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~-~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~  152 (262)
T cd07948          74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESA-VEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDK  152 (262)
T ss_pred             HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHH-HHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHH
Confidence            346889999999998885421                1222 567788899998887765  334566655544431  1


Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      .++|.|.+    +.+.|........+.++.+++..+ ++|.+    |-|....|.-...++||+.|
T Consensus       153 ~g~~~i~l----~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~v  213 (262)
T cd07948         153 LGVNRVGI----ADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHI  213 (262)
T ss_pred             cCCCEEEE----CCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence            36777655    577787777778888898888754 66665    56788888888899999964

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=96.91  E-value=0.02  Score=45.01  Aligned_cols=123  Identities=15%  Similarity=0.255  Sum_probs=66.7

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC---
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP---   78 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p---   78 (157)
                      +|......+..+|||+||+|......-| .+-+..+++. ..+.=+.++|....-.  -.++  -++|.+.+.--.+   
T Consensus        23 dpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~~~--ia~~--~kP~~vtLVPE~r~e~   98 (239)
T PF03740_consen   23 DPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKTPLNLEMAPTEEMVD--IALK--VKPDQVTLVPEKREEL   98 (239)
T ss_dssp             -HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHH--HHHH--H--SEEEEE--SGGGB
T ss_pred             CHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHcccCEEeccCCCHHHHH--HHHh--CCcCEEEECCCCCCCc
Confidence            6788888999999999999976543222 3444555553 4556666765543322  2222  2689998762211   


Q ss_pred             ----CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           79 ----GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        79 ----G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                          |.+-.......-+-++++++..-.+.+-+|=.  ++.++...+.|||.|=+=+.
T Consensus        99 TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~--~~qi~~A~~~Gad~VELhTG  154 (239)
T PF03740_consen   99 TTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD--PEQIEAAKELGADRVELHTG  154 (239)
T ss_dssp             STTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEEEEETH
T ss_pred             CCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC--HHHHHHHHHcCCCEEEEehh
Confidence                21111111223334666666543445556644  78889999999999876554

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=96.91  E-value=0.036  Score=49.16  Aligned_cols=118  Identities=19%  Similarity=0.300  Sum_probs=84.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe----cCCCCHHh----HHhhHhcCCCCCeEEEEee
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL----KPGTSVEE----VYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l----~~~t~~~~----~~~~~~~~~~~d~vl~m~v   76 (157)
                      ..+++.+.++|.|.+.+-.-..+ ..+...++++|++|..+...+    .|..+++.    ++++.+  .++|.|.+   
T Consensus        99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~--~Gad~I~i---  173 (592)
T PRK09282         99 EKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEE--MGCDSICI---  173 (592)
T ss_pred             HHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH--cCCCEEEE---
Confidence            45788899999999887744333 233788999999999887655    33233433    333333  47888866   


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                       ....|........+.++.+|+.. +++|.+    |.|....|.-..+++|||.|=..
T Consensus       174 -~Dt~G~~~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~a  229 (592)
T PRK09282        174 -KDMAGLLTPYAAYELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTA  229 (592)
T ss_pred             -CCcCCCcCHHHHHHHHHHHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEee
Confidence             46667776677777889988876 367776    99999999999999999986433

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=96.91  E-value=0.03  Score=46.63  Aligned_cols=96  Identities=20%  Similarity=0.244  Sum_probs=64.1

Q ss_pred             HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc-chhHHHHHHHHHhhC-CCCcEEEE
Q 031554           32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRY-PSLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-~~~~~~ki~~l~~~~-~~~~I~vd  108 (157)
                      -+.++++|+. +..+.+= . -...+.++...+  .++|.|.+-  +-| +.|.. .+..++.+.++++.. .+++|.+|
T Consensus       210 ~~~l~~lr~~~~~PvivK-g-v~~~~dA~~a~~--~G~d~I~vs--nhG-Gr~ld~~~~~~~~l~~i~~a~~~~i~vi~d  282 (351)
T cd04737         210 PADIEFIAKISGLPVIVK-G-IQSPEDADVAIN--AGADGIWVS--NHG-GRQLDGGPASFDSLPEIAEAVNHRVPIIFD  282 (351)
T ss_pred             HHHHHHHHHHhCCcEEEe-c-CCCHHHHHHHHH--cCCCEEEEe--CCC-CccCCCCchHHHHHHHHHHHhCCCCeEEEE
Confidence            3567778875 4444432 1 134455555554  589999873  222 22211 234567777777654 46999999


Q ss_pred             cCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          109 GGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       109 GGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      |||+ ..++.+.+..|||.+-+|++++
T Consensus       283 GGIr~g~Di~kaLalGA~~V~iGr~~l  309 (351)
T cd04737         283 SGVRRGEHVFKALASGADAVAVGRPVL  309 (351)
T ss_pred             CCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            9999 6888888889999999999765

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=96.90  E-value=0.039  Score=47.60  Aligned_cols=120  Identities=17%  Similarity=0.241  Sum_probs=84.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe----cCCCCHHhHHhhHh-c-CCCCCeEEEEeeeC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL----KPGTSVEEVYPLVE-G-ANPVEMVLVMTVEP   78 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l----~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~p   78 (157)
                      ..|++.+.++|+|.+.+-.-..+ +.+...++.+|++|..+...+    .|..+.+.+.++.+ + -.++|.|.+    .
T Consensus        98 ~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i----~  173 (467)
T PRK14041         98 ELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI----K  173 (467)
T ss_pred             HHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----C
Confidence            34788999999999888754433 233788999999999887555    34444444333322 1 147888876    4


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      ...|......+.+.++.+|+..+ ++|.+    |-|....|.-...++|||+|=+.
T Consensus       174 Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~vD~s  228 (467)
T PRK14041        174 DMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMFDTA  228 (467)
T ss_pred             CccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEee
Confidence            66677767778888999988753 56554    67888888888899999987433

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=96.89  E-value=0.0078  Score=46.82  Aligned_cols=80  Identities=13%  Similarity=0.218  Sum_probs=58.1

Q ss_pred             cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH--cCCCE
Q 031554           50 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS--AGANC  126 (157)
Q Consensus        50 ~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~--~Gad~  126 (157)
                      ...+|++.++.|.+  .++|.+.+.-.+- ..+.   +..++-|+++.+.   ++++++|||+ .+.++.+..  .|||-
T Consensus        34 ~~~dP~~~a~~~~~--~g~~~l~ivDLd~-~~~~---~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~r  104 (221)
T TIGR00734        34 LSSSPDDAAKVIEE--IGARFIYIADLDR-IVGL---GDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASR  104 (221)
T ss_pred             cCCCHHHHHHHHHH--cCCCEEEEEEccc-ccCC---cchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceE
Confidence            34688998888874  5789988877663 2232   2345566666665   4799999999 688888754  36999


Q ss_pred             EEEcccccCCCC
Q 031554          127 IVAGSSVFGAPE  138 (157)
Q Consensus       127 vV~GSai~~~~d  138 (157)
                      +|+||.-++.++
T Consensus       105 vvigT~a~~~p~  116 (221)
T TIGR00734       105 VVVATETLDITE  116 (221)
T ss_pred             EeecChhhCCHH
Confidence            999999887544

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]

Probab=96.88  E-value=0.004  Score=48.25  Aligned_cols=113  Identities=19%  Similarity=0.287  Sum_probs=73.6

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHH---------------
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL---------------   96 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l---------------   96 (157)
                      .+..+.|.+++.++=..+...+-=|.++.+.   .+.-.|-.- -+.|++.   ..+..+.++++               
T Consensus       113 AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~---EGAAMIRtk-GeagTG~---v~EaVkhvr~i~geir~~~~m~~dev  185 (296)
T KOG1606|consen  113 ADWDHHIEKHNFKVPFVCGCRDLGEALRRIR---EGAAMIRTK-GEAGTGD---VSEAVKHVRSINGEIRVLKNMDDDEV  185 (296)
T ss_pred             ccccchhhhhcCcCceeeccccHHHHHHHHh---hchhhheec-cccCCCc---HHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            4566678888888877777666667777777   555555331 1234332   22333322222               


Q ss_pred             -----------------HhhCCCCcE--EEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           97 -----------------RNRYPSLDI--EVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        97 -----------------~~~~~~~~I--~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                                       +++. .+++  .+.||+. +.++..+-+.|.|++-+||.||.++||....+.+-+..-.
T Consensus       186 ~t~Ak~i~aP~dLv~~t~q~G-rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAvth  260 (296)
T KOG1606|consen  186 FTFAKEIAAPYDLVKQTKQLG-RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAVTH  260 (296)
T ss_pred             HHHHHHhcCcHHHHHHHHHcC-CCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHHHHHc
Confidence                             1111 2222  2567765 8999999999999999999999999999888877665443

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.88  E-value=0.0095  Score=51.03  Aligned_cols=78  Identities=22%  Similarity=0.362  Sum_probs=59.6

Q ss_pred             eEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC
Q 031554           45 PGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG  123 (157)
Q Consensus        45 ~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G  123 (157)
                      ++-++... ...+.+..+++  .++|.|.+-+.+ |     ..+..++.|+++|+.+|+++|.+.+..+.+.+..+.++|
T Consensus       215 V~aav~~~~~~~~r~~~L~~--aG~d~I~vd~a~-g-----~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG  286 (450)
T TIGR01302       215 VGAAVGTREFDKERAEALVK--AGVDVIVIDSSH-G-----HSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG  286 (450)
T ss_pred             EEEEecCchhHHHHHHHHHH--hCCCEEEEECCC-C-----cHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC
Confidence            44455442 33466777775  579998876555 2     224678889999998889999998899999999999999


Q ss_pred             CCEEEEc
Q 031554          124 ANCIVAG  130 (157)
Q Consensus       124 ad~vV~G  130 (157)
                      ||++.+|
T Consensus       287 ad~i~vg  293 (450)
T TIGR01302       287 ADGLRVG  293 (450)
T ss_pred             CCEEEEC
Confidence            9999765

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain

Probab=96.88  E-value=0.05  Score=38.19  Aligned_cols=91  Identities=12%  Similarity=0.146  Sum_probs=61.5

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~  112 (157)
                      +-..++.+|.++ +.+.+.+|.+.+.+...- ..+|+|.+-+..+     ...+..-+-++++++..+ ++.+.+.|...
T Consensus        19 ~~~~l~~~G~~v-i~lG~~vp~e~~~~~a~~-~~~d~V~iS~~~~-----~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~   91 (122)
T cd02071          19 IARALRDAGFEV-IYTGLRQTPEEIVEAAIQ-EDVDVIGLSSLSG-----GHMTLFPEVIELLRELGAGDILVVGGGIIP   91 (122)
T ss_pred             HHHHHHHCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEcccch-----hhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            344567777754 456777888776544443 6899998744432     223334444667777744 67888888888


Q ss_pred             HhhHHHHHHcCCCEEEEcc
Q 031554          113 PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GS  131 (157)
                      .+...++.++|.|.++-++
T Consensus        92 ~~~~~~~~~~G~d~~~~~~  110 (122)
T cd02071          92 PEDYELLKEMGVAEIFGPG  110 (122)
T ss_pred             HHHHHHHHHCCCCEEECCC
Confidence            8889999999999886554

This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=96.87  E-value=0.02  Score=48.12  Aligned_cols=112  Identities=16%  Similarity=0.220  Sum_probs=71.6

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc--chhHHHHHHHHHhhC-CCCcEEEEc
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF--MPEMMDKVRSLRNRY-PSLDIEVDG  109 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~--~~~~~~ki~~l~~~~-~~~~I~vdG  109 (157)
                      +.|+++|+.=--+-+.=. -.+.+.++...+  .++|.|.+.    |.+|..+  .+.+++-+.++++.. .+++|.+||
T Consensus       235 ~di~~lr~~~~~pvivKg-V~s~~dA~~a~~--~Gvd~I~Vs----~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dG  307 (381)
T PRK11197        235 KDLEWIRDFWDGPMVIKG-ILDPEDARDAVR--FGADGIVVS----NHGGRQLDGVLSSARALPAIADAVKGDITILADS  307 (381)
T ss_pred             HHHHHHHHhCCCCEEEEe-cCCHHHHHHHHh--CCCCEEEEC----CCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeC
Confidence            347888886322322222 256666666665  589999874    2233332  234556666666543 579999999


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEcccccCC------CCHHHHHHHHHHHHH
Q 031554          110 GLG-PSTIAEAASAGANCIVAGSSVFGA------PEPAHVISLMRKSVE  151 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GSai~~~------~d~~~~~~~l~~~~~  151 (157)
                      ||+ ..++...+..|||.+-+|+.+...      +-....++.|++.++
T Consensus       308 GIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~  356 (381)
T PRK11197        308 GIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMR  356 (381)
T ss_pred             CcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            999 588888899999999999875421      233455555555444

>PLN02623 pyruvate kinase

Probab=96.86  E-value=0.093  Score=46.36  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=94.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK   84 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~   84 (157)
                      ..++...+.|+|+|.+-.--..+.+.++-+++++.|..+.+.  |....-++.+.+++   ..+|.|++-   ||--+..
T Consensus       282 ~di~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl---~g~DgImIg---rgDLgve  355 (581)
T PLN02623        282 EDIKFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSII---TASDGAMVA---RGDLGAE  355 (581)
T ss_pred             HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHH---HhCCEEEEC---cchhhhh
Confidence            456777899999999986554444466777777777665554  54445667888998   789999875   4432333


Q ss_pred             cc-h---hHHHHHHHHHhhCCCCcEEEEc--------CCCH-----hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           85 FM-P---EMMDKVRSLRNRYPSLDIEVDG--------GLGP-----STIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        85 ~~-~---~~~~ki~~l~~~~~~~~I~vdG--------GI~~-----~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      .. +   ...++|-+..+. .+.++.+..        .-++     ..+..++..|+|.+.+|+-..--.-|.++++.|.
T Consensus       356 lg~~~v~~~qk~Ii~~~~~-~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~  434 (581)
T PLN02623        356 LPIEEVPLLQEEIIRRCRS-MGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH  434 (581)
T ss_pred             cCcHHHHHHHHHHHHHHHH-hCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHH
Confidence            22 2   334443333333 245555433        1233     5788889999999999987665578999999999


Q ss_pred             HHHHHH
Q 031554          148 KSVEDA  153 (157)
Q Consensus       148 ~~~~~~  153 (157)
                      ++...+
T Consensus       435 ~I~~~a  440 (581)
T PLN02623        435 TVALRT  440 (581)
T ss_pred             HHHHHH
Confidence            987753

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=96.86  E-value=0.029  Score=47.01  Aligned_cols=95  Identities=12%  Similarity=0.176  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee--eCCC-CCcccchhHHHHHHHHHhhCCCCcEE
Q 031554           30 NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV--EPGF-GGQKFMPEMMDKVRSLRNRYPSLDIE  106 (157)
Q Consensus        30 ~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v--~pG~-~gq~~~~~~~~ki~~l~~~~~~~~I~  106 (157)
                      .+.+.++.+|+.+..+.+.++|.+..+..+.+.+  .++|.|.+.+.  ...+ .+..    ....+.++++.. +++|.
T Consensus       120 l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~e--AGad~I~ihgrt~~q~~~sg~~----~p~~l~~~i~~~-~IPVI  192 (369)
T TIGR01304       120 LLGERIAEVRDSGVITAVRVSPQNAREIAPIVVK--AGADLLVIQGTLVSAEHVSTSG----EPLNLKEFIGEL-DVPVI  192 (369)
T ss_pred             HHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHH--CCCCEEEEeccchhhhccCCCC----CHHHHHHHHHHC-CCCEE
Confidence            3478899999988666666776666666666665  68999987632  2222 1211    133455555543 67887


Q ss_pred             EEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554          107 VDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       107 vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +.+..+.+.+..+.++|||+|++|+
T Consensus       193 ~G~V~t~e~A~~~~~aGaDgV~~G~  217 (369)
T TIGR01304       193 AGGVNDYTTALHLMRTGAAGVIVGP  217 (369)
T ss_pred             EeCCCCHHHHHHHHHcCCCEEEECC
Confidence            7444457999999999999999774

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=96.86  E-value=0.055  Score=47.01  Aligned_cols=119  Identities=14%  Similarity=0.200  Sum_probs=85.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe----cCCCCHHhHHhhHh-c-CCCCCeEEEEeeeC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL----KPGTSVEEVYPLVE-G-ANPVEMVLVMTVEP   78 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l----~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~p   78 (157)
                      ..|++.++++|.|++.+-....+ ..+...++.+++.|..+-.+|    +|....+.+.++.+ + -.++|.|.+    +
T Consensus       100 ~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~I----k  175 (499)
T PRK12330        100 DRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICI----K  175 (499)
T ss_pred             HHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEe----C
Confidence            45889999999999777644333 233889999999998773333    56665655433332 1 147888866    5


Q ss_pred             CCCCcccchhHHHHHHHHHhhCC-CCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYP-SLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~-~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                      ...|-.......+.++.+++..+ +++|.+    |-|....|.-..+++|||.|=
T Consensus       176 DtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vD  230 (499)
T PRK12330        176 DMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVD  230 (499)
T ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEE
Confidence            66777777778888999998874 677776    457888888888999999873

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=96.86  E-value=0.049  Score=44.95  Aligned_cols=117  Identities=17%  Similarity=0.166  Sum_probs=83.0

Q ss_pred             HHHHHHHHhCCCCEEEEc--ccCCcchHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEEEeeeCC
Q 031554            6 LDYVEPLGKAGASGFTFH--VEISKDNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLVMTVEPG   79 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh--~e~~~~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG   79 (157)
                      .+.++.+.++|+|.|.+-  ..-.+.. .+.++.+|+.|..+...+  ....+.+.+.++.+.  ..++|.|.+    +.
T Consensus        90 ~~dl~~a~~~gvd~iri~~~~~e~d~~-~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i----~D  164 (333)
T TIGR03217        90 VHDLKAAYDAGARTVRVATHCTEADVS-EQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYI----VD  164 (333)
T ss_pred             HHHHHHHHHCCCCEEEEEeccchHHHH-HHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEE----cc
Confidence            356899999999998854  3332334 889999999999986654  444565555444431  146887765    46


Q ss_pred             CCCcccchhHHHHHHHHHhhCC-CCcEEEEc----CCCHhhHHHHHHcCCCEE
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYP-SLDIEVDG----GLGPSTIAEAASAGANCI  127 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdG----GI~~~~i~~~~~~Gad~v  127 (157)
                      +.|.....+..+.++.+++..+ +++|.+=+    |....|.-..+++||+.|
T Consensus       165 T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~i  217 (333)
T TIGR03217       165 SAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRI  217 (333)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEE
Confidence            6677777778888999988753 57777644    566678888889999984

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PLN02979 glycolate oxidase

Probab=96.86  E-value=0.034  Score=46.47  Aligned_cols=96  Identities=18%  Similarity=0.240  Sum_probs=64.7

Q ss_pred             HHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcC
Q 031554           33 ELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGG  110 (157)
Q Consensus        33 ~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGG  110 (157)
                      +.++++|+. +..+.+  .--...+.++...+  .++|.|.+-  +-|.......+.+++-+.++++. ..+++|.+|||
T Consensus       213 ~dl~wlr~~~~~Pviv--KgV~~~~dA~~a~~--~Gvd~I~Vs--nhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGG  286 (366)
T PLN02979        213 KDVQWLQTITKLPILV--KGVLTGEDARIAIQ--AGAAGIIVS--NHGARQLDYVPATISALEEVVKATQGRIPVFLDGG  286 (366)
T ss_pred             HHHHHHHhccCCCEEe--ecCCCHHHHHHHHh--cCCCEEEEC--CCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCC
Confidence            558888886 333322  11134566666665  589999773  22322223344567777777665 35789999999


Q ss_pred             CC-HhhHHHHHHcCCCEEEEccccc
Q 031554          111 LG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       111 I~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      |+ ..++-.....|||.+-+|+.+.
T Consensus       287 Ir~G~Di~KALALGAdaV~iGrp~L  311 (366)
T PLN02979        287 VRRGTDVFKALALGASGIFIGRPVV  311 (366)
T ss_pred             cCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            99 5888888899999999998754

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=96.86  E-value=0.041  Score=47.58  Aligned_cols=117  Identities=20%  Similarity=0.299  Sum_probs=76.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHH-------c-CCceEEEecC-CCCHHhHHhhHhcCCCCCeEE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD----NWQELVQRIKS-------K-GMRPGVALKP-GTSVEEVYPLVEGANPVEMVL   72 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~-------~-g~~~gl~l~~-~t~~~~~~~~~~~~~~~d~vl   72 (157)
                      .+.++.+.+.+.+.+.|--+...-    +..++++.+..       . ...++-++.+ .++.+.++.+++  .++|.+.
T Consensus       168 ~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~--agvdviv  245 (486)
T PRK05567        168 EEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVE--AGVDVLV  245 (486)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHH--hCCCEEE
Confidence            345566677777776665332110    11344433321       1 1234445542 145778888886  5899664


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      +-+.+    |+  ....++.++.+++..|+.+|.+.++.+.+++..+.++|||+|.+|
T Consensus       246 vD~a~----g~--~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg  297 (486)
T PRK05567        246 VDTAH----GH--SEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVG  297 (486)
T ss_pred             EECCC----Cc--chhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEEC
Confidence            43222    22  246788899999988899999999999999999999999999886

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=96.85  E-value=0.066  Score=41.69  Aligned_cols=139  Identities=20%  Similarity=0.288  Sum_probs=89.0

Q ss_pred             ChHHHHHHHHhCCCCEEEEcc-cCC------cchHHHHHHHHHHc-CCceEEEec---CCC-CHHh----HHhhHhcCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHV-EIS------KDNWQELVQRIKSK-GMRPGVALK---PGT-SVEE----VYPLVEGANP   67 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~-e~~------~~~~~~~i~~ir~~-g~~~gl~l~---~~t-~~~~----~~~~~~~~~~   67 (157)
                      +|+.|. .+.++|||.|-+.- ++.      -+. +++++.-|+- ...+-+.++   |++ |++.    ...+.+  .+
T Consensus        70 ep~~f~-~aV~AGAdliEIGNfDsFY~qGr~f~a-~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~--~G  145 (242)
T PF04481_consen   70 EPELFV-AAVKAGADLIEIGNFDSFYAQGRRFSA-EEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVK--AG  145 (242)
T ss_pred             CHHHHH-HHHHhCCCEEEecchHHHHhcCCeecH-HHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHH--hC
Confidence            577776 56889999999982 110      012 4444444432 222322222   333 3332    233332  58


Q ss_pred             CCeEEEEeeeCCCCCcccchhHHHHHHHHHh---------hCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCC
Q 031554           68 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---------RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE  138 (157)
Q Consensus        68 ~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~---------~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d  138 (157)
                      +|+|+-   +-|+..+++.+..+..|.+..-         ..-+++|.-.-|++.=|++....+||.++=+||+|-+-.|
T Consensus       146 aDiIQT---EGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaGAsGVGVGSavn~Ln~  222 (242)
T PF04481_consen  146 ADIIQT---EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAGASGVGVGSAVNRLND  222 (242)
T ss_pred             CcEEEc---CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHHHcCCcccchhHHhhhccc
Confidence            999974   5566666666666666655432         1247899999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHH
Q 031554          139 PAHVISLMRKS  149 (157)
Q Consensus       139 ~~~~~~~l~~~  149 (157)
                      ..+.+..++.+
T Consensus       223 ~~aMva~vr~l  233 (242)
T PF04481_consen  223 EVAMVAAVRSL  233 (242)
T ss_pred             HHHHHHHHHHH
Confidence            76655554443

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=96.84  E-value=0.022  Score=45.16  Aligned_cols=118  Identities=19%  Similarity=0.197  Sum_probs=81.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEEEeeeCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLVMTVEPGF   80 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG~   80 (157)
                      .+.++.+.++|+|.+.+-.-..+ +.+.+.++++|++|..+.+.+  ....+.+.+.++.+.  ..++|.|.+    +.+
T Consensus        88 ~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l----~DT  163 (263)
T cd07943          88 VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV----TDS  163 (263)
T ss_pred             HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE----cCC
Confidence            46788999999999886543322 233789999999999887765  233344444333321  136888765    677


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      .|........+.++.+++..+..++.+    |=|....|.-...++||+.+
T Consensus       164 ~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~v  214 (263)
T cd07943         164 AGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRI  214 (263)
T ss_pred             CCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence            787777777778888888765446665    55666778888889999975

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>PLN02389 biotin synthase

Probab=96.80  E-value=0.15  Score=42.79  Aligned_cols=143  Identities=17%  Similarity=0.242  Sum_probs=89.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc---------ch---HHHHHHHHHHcCCce--EEEecCCCCHHh----HHhhHhcCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK---------DN---WQELVQRIKSKGMRP--GVALKPGTSVEE----VYPLVEGANP   67 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~---------~~---~~~~i~~ir~~g~~~--gl~l~~~t~~~~----~~~~~~~~~~   67 (157)
                      ...++.+.++|+|.+..-.|+.+         ..   ..++++.+++.|+++  |+.+......+.    +..+.++...
T Consensus       178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~  257 (379)
T PLN02389        178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEH  257 (379)
T ss_pred             HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccC
Confidence            35678889999999988877432         11   146888899999988  555554444433    2222212024


Q ss_pred             CCeEEEEeeeC--CCCCcc---c-chhHHHHHHHHHhhCCCCcEEEEcCC---CHhhHHHHHHcCCCEEEEccc-ccCC-
Q 031554           68 VEMVLVMTVEP--GFGGQK---F-MPEMMDKVRSLRNRYPSLDIEVDGGL---GPSTIAEAASAGANCIVAGSS-VFGA-  136 (157)
Q Consensus        68 ~d~vl~m~v~p--G~~gq~---~-~~~~~~ki~~l~~~~~~~~I~vdGGI---~~~~i~~~~~~Gad~vV~GSa-i~~~-  136 (157)
                      +|.|-+.-..|  |+.=+.   . ..+.++.|.-.|-+.|+..+-+.||=   ..+..+....+|||.+.+|-+ +... 
T Consensus       258 ~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g  337 (379)
T PLN02389        258 PESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPN  337 (379)
T ss_pred             CcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCC
Confidence            67776655444  543111   1 12445566666666788777777774   345557788999999999998 7754 


Q ss_pred             CCHHHHHHHHHH
Q 031554          137 PEPAHVISLMRK  148 (157)
Q Consensus       137 ~d~~~~~~~l~~  148 (157)
                      .++.+-++-+++
T Consensus       338 ~~~~~d~~~~~~  349 (379)
T PLN02389        338 NDFDADQAMFKE  349 (379)
T ss_pred             CChHHHHHHHHH
Confidence            355555555554

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=96.77  E-value=0.093  Score=43.50  Aligned_cols=138  Identities=17%  Similarity=0.212  Sum_probs=77.7

Q ss_pred             HHHHHhCCCCEEEEcccCCcc-----------hHHHHHHHHHHcCCceEEE--ecCCC------------CHHh----HH
Q 031554            9 VEPLGKAGASGFTFHVEISKD-----------NWQELVQRIKSKGMRPGVA--LKPGT------------SVEE----VY   59 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~-----------~~~~~i~~ir~~g~~~gl~--l~~~t------------~~~~----~~   59 (157)
                      ++.+.+.|||.|.+|.-...+           .+.++.++++++|+.+-+.  ..+..            ..+.    .+
T Consensus       112 ve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r  191 (340)
T PRK12858        112 VRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTME  191 (340)
T ss_pred             HHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHH
Confidence            577899999999998432111           1366778899999988775  23321            1111    22


Q ss_pred             hhHhcCCCCCeEEEEeeeC-------CCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCCCHh----hHHHHHHcCC-
Q 031554           60 PLVEGANPVEMVLVMTVEP-------GFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLGPS----TIAEAASAGA-  124 (157)
Q Consensus        60 ~~~~~~~~~d~vl~m~v~p-------G~~gq~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~----~i~~~~~~Ga-  124 (157)
                      ...+-.-++|++=+-  .|       |++...   -..+..+..+++.+..+-.-|..-||.+.+    ++....++|| 
T Consensus       192 ~~~~~elGaDvlKve--~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~~~~~f~~~l~~A~~aGa~  269 (340)
T PRK12858        192 EFSKPRYGVDVLKVE--VPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGVSPELFRRTLEFACEAGAD  269 (340)
T ss_pred             HHhhhccCCeEEEee--CCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            222100267766331  23       222110   012233445555554433335558888864    4555688999 


Q ss_pred             -CEEEEcccccCC-------CCHHHHHHHHHH
Q 031554          125 -NCIVAGSSVFGA-------PEPAHVISLMRK  148 (157)
Q Consensus       125 -d~vV~GSai~~~-------~d~~~~~~~l~~  148 (157)
                       .++..|+++|+.       ++.....++|++
T Consensus       270 f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~  301 (340)
T PRK12858        270 FSGVLCGRATWQDGIEPYAAEGEEARRAWLNT  301 (340)
T ss_pred             ccchhhhHHHHhhhhccccCCCHHHHHHHHHH
Confidence             999999999964       344444444444

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=96.73  E-value=0.034  Score=46.96  Aligned_cols=115  Identities=21%  Similarity=0.304  Sum_probs=81.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCC-CH-------HhHHhhHhcCCCCCeEEEEee
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGT-SV-------EEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t-~~-------~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      +.|++.+++.|.|.+-+--.-.| ..+...++.++++|..+..+++=.+ |+       +.+++++++  ++|.|.+-  
T Consensus       101 e~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~--g~DSIciK--  176 (472)
T COG5016         101 EKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEM--GVDSICIK--  176 (472)
T ss_pred             HHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHc--CCCEEEee--
Confidence            67899999999999887633222 2347789999999999877764333 32       334555553  78999763  


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEE----EEcCCCHhhHHHHHHcCCCEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIE----VDGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~----vdGGI~~~~i~~~~~~Gad~v  127 (157)
                        .-+|-.-.....+.|+.+|+..+ ++|.    ..-|++.-+.-..+++|||++
T Consensus       177 --DmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvEAGvD~i  228 (472)
T COG5016         177 --DMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVEAGVDGI  228 (472)
T ss_pred             --cccccCChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHHHhCcchh
Confidence              33444445578888999998753 5544    567888888888899999987

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=96.73  E-value=0.053  Score=43.83  Aligned_cols=117  Identities=15%  Similarity=0.144  Sum_probs=82.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEec-----C---CCCHHhHHhhHh
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALK-----P---GTSVEEVYPLVE   63 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~-----~---~t~~~~~~~~~~   63 (157)
                      .-++.+.++|+|.|.+-.-.++.               .+.+.++++|++|..+...+.     |   .++.+.+.++.+
T Consensus        83 ~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~  162 (287)
T PRK05692         83 KGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAE  162 (287)
T ss_pred             HHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence            35688899999999887554321               125788999999998754332     2   234444433332


Q ss_pred             c--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           64 G--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        64 ~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      .  -.++|.|.+    +.+.|.....+..+.++.+++..++.+|.+    |-|....|.-...++||+.|
T Consensus       163 ~~~~~G~d~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~i  228 (287)
T PRK05692        163 RLFALGCYEISL----GDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVF  228 (287)
T ss_pred             HHHHcCCcEEEe----ccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence            1  146888766    567777777778888999998876666665    66788888888899999987

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.73  E-value=0.022  Score=47.67  Aligned_cols=93  Identities=18%  Similarity=0.227  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee--eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV--EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v--~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                      .+.++.+++.+..+-+-++|.+..+.++.+.+  .++|+|.+.+.  ...+.+..-   ....+.++.+. .+++|.+ |
T Consensus       121 ~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~e--aGvd~I~vhgrt~~~~h~~~~~---~~~~i~~~ik~-~~ipVIa-G  193 (368)
T PRK08649        121 TERIAEIRDAGVIVAVSLSPQRAQELAPTVVE--AGVDLFVIQGTVVSAEHVSKEG---EPLNLKEFIYE-LDVPVIV-G  193 (368)
T ss_pred             HHHHHHHHhCeEEEEEecCCcCHHHHHHHHHH--CCCCEEEEeccchhhhccCCcC---CHHHHHHHHHH-CCCCEEE-e
Confidence            34445555554333333454445566666665  68999987532  112222111   12334444443 2688877 5


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEcc
Q 031554          110 GLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      +|. .+.+..+.++|||++.+|.
T Consensus       194 ~V~t~e~A~~l~~aGAD~V~VG~  216 (368)
T PRK08649        194 GCVTYTTALHLMRTGAAGVLVGI  216 (368)
T ss_pred             CCCCHHHHHHHHHcCCCEEEECC
Confidence            554 7999999999999999994

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=96.72  E-value=0.087  Score=37.76  Aligned_cols=104  Identities=15%  Similarity=0.085  Sum_probs=63.6

Q ss_pred             HHHHHHcCCceEEEecCCCCHH-hHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC
Q 031554           35 VQRIKSKGMRPGVALKPGTSVE-EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG  112 (157)
Q Consensus        35 i~~ir~~g~~~gl~l~~~t~~~-~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~  112 (157)
                      -..++.+|.++- .+....+.+ .++...+  .++|.|.+-+...+     ..+..-+-++++++..+ ++.|.+.|.+-
T Consensus        23 ~~~l~~~GfeVi-~lg~~~s~e~~v~aa~e--~~adii~iSsl~~~-----~~~~~~~~~~~L~~~g~~~i~vivGG~~~   94 (132)
T TIGR00640        23 ATAYADLGFDVD-VGPLFQTPEEIARQAVE--ADVHVVGVSSLAGG-----HLTLVPALRKELDKLGRPDILVVVGGVIP   94 (132)
T ss_pred             HHHHHhCCcEEE-ECCCCCCHHHHHHHHHH--cCCCEEEEcCchhh-----hHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence            344666787652 333334443 3455544  68888877433321     12233334555666543 67787877788


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      .+...++.++|+|.++     .-..++.+.+..+.+.+.
T Consensus        95 ~~~~~~l~~~Gvd~~~-----~~gt~~~~i~~~l~~~~~  128 (132)
T TIGR00640        95 PQDFDELKEMGVAEIF-----GPGTPIPESAIFLLKKLR  128 (132)
T ss_pred             hHhHHHHHHCCCCEEE-----CCCCCHHHHHHHHHHHHH
Confidence            8889999999999772     223477888888777554

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>PRK08508 biotin synthase; Provisional

Probab=96.71  E-value=0.2  Score=40.15  Aligned_cols=141  Identities=23%  Similarity=0.311  Sum_probs=87.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc---------chH---HHHHHHHHHcCCce--EEEecCCCCHHhHH----hhHhcCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK---------DNW---QELVQRIKSKGMRP--GVALKPGTSVEEVY----PLVEGANP   67 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~---------~~~---~~~i~~ir~~g~~~--gl~l~~~t~~~~~~----~~~~~~~~   67 (157)
                      ...++.+.++|+|.+....|+.+         +.+   .++++.+++.|+++  |+.+......+.+.    .+.++  +
T Consensus       102 ~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L--~  179 (279)
T PRK08508        102 VEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASL--S  179 (279)
T ss_pred             HHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcC--C
Confidence            45678889999999997655543         112   34777788888876  44555555444333    33222  5


Q ss_pred             CCeEEEEeeeC--CCCC--ccc-chhHHHHHHHHHhhCCCCcEEEEcCCCH---hhHHHHHHcCCCEEEEcccccCCC-C
Q 031554           68 VEMVLVMTVEP--GFGG--QKF-MPEMMDKVRSLRNRYPSLDIEVDGGLGP---STIAEAASAGANCIVAGSSVFGAP-E  138 (157)
Q Consensus        68 ~d~vl~m~v~p--G~~g--q~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~~---~~i~~~~~~Gad~vV~GSai~~~~-d  138 (157)
                      +|.|-+.-..|  |+.-  +.. ..+.++-+.-.|-+.|+..|-+.||-..   +.-+.+..+|||.+.+|-++.... .
T Consensus       180 ~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~~~~~~~~g~n~~~~g~~lt~~g~~  259 (279)
T PRK08508        180 PHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEA  259 (279)
T ss_pred             CCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhhHHHHHhcCCcceeecCcccCCCCC
Confidence            66565544444  3321  111 2234555555566678999999999732   344567889999999999988553 4


Q ss_pred             HHHHHHHHHH
Q 031554          139 PAHVISLMRK  148 (157)
Q Consensus       139 ~~~~~~~l~~  148 (157)
                      +.+-++-+++
T Consensus       260 ~~~d~~~~~~  269 (279)
T PRK08508        260 PKKDIEKLKS  269 (279)
T ss_pred             hHHHHHHHHH
Confidence            5555554443

>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism

Probab=96.71  E-value=0.037  Score=43.40  Aligned_cols=122  Identities=16%  Similarity=0.230  Sum_probs=72.9

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      +|......+.++|||+||+|......-| .+-+..+++. ..+.=+.+.|...  .+.-.++  -++|.|.+.   |-..
T Consensus        22 dpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e--m~~ia~~--~kP~~vtLV---PEkr   94 (234)
T cd00003          22 DPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPTEE--MLEIALE--VKPHQVTLV---PEKR   94 (234)
T ss_pred             CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHH--HHHHHHH--CCCCEEEEC---CCCC
Confidence            6788889999999999999976533211 3444444443 4455555554333  3333333  379999775   5444


Q ss_pred             Ccccchh----------HHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554           82 GQKFMPE----------MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        82 gq~~~~~----------~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      .+...+.          .-+-++++++..-.+.+-+|-  +++.+....+.|||.|=+=+.=|
T Consensus        95 ~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP--d~~qi~~A~~~GAd~VELhTG~Y  155 (234)
T cd00003          95 EELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDP--DPEQIEAAKEVGADRVELHTGPY  155 (234)
T ss_pred             CCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhh
Confidence            3333322          122255555543334455553  47888899999999987665433

In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=96.71  E-value=0.056  Score=47.89  Aligned_cols=116  Identities=21%  Similarity=0.303  Sum_probs=82.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEec----CCCCHHhH----HhhHhcCCCCCeEEEEee
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALK----PGTSVEEV----YPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~----~~t~~~~~----~~~~~~~~~~d~vl~m~v   76 (157)
                      ..|++.+.++|.|.+.+-.-..+ ..+...++.+|++|..+...++    |-.+++.+    +.+.+  .++|.|.+   
T Consensus        94 ~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~--~Gad~I~i---  168 (582)
T TIGR01108        94 ERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLE--MGVDSICI---  168 (582)
T ss_pred             HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH--cCCCEEEE---
Confidence            34788899999999887744332 2337899999999998876543    32334433    33333  47888766   


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEE----EEcCCCHhhHHHHHHcCCCEEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIE----VDGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~----vdGGI~~~~i~~~~~~Gad~vV  128 (157)
                       ....|........+.++.+|+..+ .+|.    -|.|....|.-..+++|||.|=
T Consensus       169 -~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~~vd  222 (582)
T TIGR01108       169 -KDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGID  222 (582)
T ss_pred             -CCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCCEEE
Confidence             466677767778888999988753 4444    5788888888888999999873

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=96.69  E-value=0.034  Score=46.32  Aligned_cols=97  Identities=21%  Similarity=0.264  Sum_probs=63.1

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI  111 (157)
                      +.|+++++.=..+-+.=.. .+.+.+....+  .++|.|.+-  +-|.....+-+.+++-+.++++. ..+++|.+||||
T Consensus       215 ~~i~~~~~~~~~pvivKgv-~~~~da~~~~~--~G~~~i~vs--~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGi  289 (356)
T PF01070_consen  215 DDIEWIRKQWKLPVIVKGV-LSPEDAKRAVD--AGVDGIDVS--NHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGI  289 (356)
T ss_dssp             HHHHHHHHHCSSEEEEEEE--SHHHHHHHHH--TT-SEEEEE--SGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS-
T ss_pred             HHHHHHhcccCCceEEEec-ccHHHHHHHHh--cCCCEEEec--CCCcccCccccccccccHHHHhhhcCCeeEEEeCCC
Confidence            4577888763333332111 56666666666  589999873  23333344556778888888874 358999999999


Q ss_pred             C-HhhHHHHHHcCCCEEEEccccc
Q 031554          112 G-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       112 ~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      + ..++-..+..|||.+-+|+.+.
T Consensus       290 r~g~Dv~kalaLGA~~v~igr~~l  313 (356)
T PF01070_consen  290 RRGLDVAKALALGADAVGIGRPFL  313 (356)
T ss_dssp             -SHHHHHHHHHTT-SEEEESHHHH
T ss_pred             CCHHHHHHHHHcCCCeEEEccHHH
Confidence            9 5778888999999999998754

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=96.65  E-value=0.029  Score=47.71  Aligned_cols=93  Identities=19%  Similarity=0.333  Sum_probs=61.5

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC-CCCcccchhHHHHHHHHHhhC-------CCC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG-FGGQKFMPEMMDKVRSLRNRY-------PSL  103 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG-~~gq~~~~~~~~ki~~l~~~~-------~~~  103 (157)
                      .+.++.+++.|..         ..+..+...+. +..|.|++- .+.| -.++.-....+..+.+++...       .++
T Consensus       152 ~~~v~~L~~~G~i---------t~~eA~~A~~~-g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~i  220 (418)
T cd04742         152 ERILKKLLAEGKI---------TEEQAELARRV-PVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPI  220 (418)
T ss_pred             HHHHHHHHHcCCC---------CHHHHHHHHhC-CCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCc
Confidence            6889999999976         34444434333 446888775 4443 212211223444455554321       258


Q ss_pred             cEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554          104 DIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus       104 ~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      +|.+.|||. .+.+......|||.+.+||...-
T Consensus       221 pViAAGGI~tg~~vaAA~alGAd~V~~GT~fla  253 (418)
T cd04742         221 RVGAAGGIGTPEAAAAAFALGADFIVTGSINQC  253 (418)
T ss_pred             eEEEECCCCCHHHHHHHHHcCCcEEeeccHHHh
Confidence            999999996 89999999999999999997553

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=96.59  E-value=0.16  Score=36.56  Aligned_cols=106  Identities=16%  Similarity=0.139  Sum_probs=68.7

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI  111 (157)
                      -+...++.+|.++ +.+.+++|.+.+.+...- ..+|+|.+-+...     .-.+...+-++++++.. +++.|.+.|.+
T Consensus        22 iv~~~lr~~G~eV-i~LG~~vp~e~i~~~a~~-~~~d~V~lS~~~~-----~~~~~~~~~~~~L~~~~~~~~~i~vGG~~   94 (137)
T PRK02261         22 ILDRALTEAGFEV-INLGVMTSQEEFIDAAIE-TDADAILVSSLYG-----HGEIDCRGLREKCIEAGLGDILLYVGGNL   94 (137)
T ss_pred             HHHHHHHHCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEcCccc-----cCHHHHHHHHHHHHhcCCCCCeEEEECCC
Confidence            3445677778764 457778888776555543 6789987744332     12334444567777763 47889999988


Q ss_pred             C------HhhHHHHHHcCCCEEEEcccccCC-CCHHHHHHHHHHHHH
Q 031554          112 G------PSTIAEAASAGANCIVAGSSVFGA-PEPAHVISLMRKSVE  151 (157)
Q Consensus       112 ~------~~~i~~~~~~Gad~vV~GSai~~~-~d~~~~~~~l~~~~~  151 (157)
                      .      .+..+.+.+.|+|.+      |.. .++.+.+..+++.+.
T Consensus        95 ~~~~~~~~~~~~~l~~~G~~~v------f~~~~~~~~i~~~l~~~~~  135 (137)
T PRK02261         95 VVGKHDFEEVEKKFKEMGFDRV------FPPGTDPEEAIDDLKKDLN  135 (137)
T ss_pred             CCCccChHHHHHHHHHcCCCEE------ECcCCCHHHHHHHHHHHhc
Confidence            3      455578999997754      432 466777777776554

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=96.59  E-value=0.009  Score=46.61  Aligned_cols=124  Identities=15%  Similarity=0.183  Sum_probs=73.5

Q ss_pred             HHHHHHHhCCCCEEEEcccC---Cc-------chHHHHHHHHHHcCCceEEEecCCCCH----------HhHHhhHhcCC
Q 031554            7 DYVEPLGKAGASGFTFHVEI---SK-------DNWQELVQRIKSKGMRPGVALKPGTSV----------EEVYPLVEGAN   66 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~---~~-------~~~~~~i~~ir~~g~~~gl~l~~~t~~----------~~~~~~~~~~~   66 (157)
                      .-++.+.+.|||-|-+....   ..       +.+.++.+.++++|+++.+...+....          ....++.-- .
T Consensus        80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e-~  158 (236)
T PF01791_consen   80 AEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAE-L  158 (236)
T ss_dssp             HHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHH-h
Confidence            45788899999999887433   11       122566677777888887764332222          222222111 5


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC--C-CCcEEEEcCC------C-HhhHHHHHHcCC--CEEEEccccc
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--P-SLDIEVDGGL------G-PSTIAEAASAGA--NCIVAGSSVF  134 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~-~~~I~vdGGI------~-~~~i~~~~~~Ga--d~vV~GSai~  134 (157)
                      ++|+|=.   ..|+. ........+.++++-+..  | ++.|-+-||+      + .+.+.+++++||  -++..|+.||
T Consensus       159 GaD~vKt---~tg~~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~  234 (236)
T PF01791_consen  159 GADFVKT---STGKP-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW  234 (236)
T ss_dssp             T-SEEEE---E-SSS-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred             CCCEEEe---cCCcc-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            8899853   33322 333344445555554421  2 3459999999      3 456667779999  8899999888


Q ss_pred             C
Q 031554          135 G  135 (157)
Q Consensus       135 ~  135 (157)
                      +
T Consensus       235 q  235 (236)
T PF01791_consen  235 Q  235 (236)
T ss_dssp             T
T ss_pred             c
Confidence            5

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=96.58  E-value=0.079  Score=36.44  Aligned_cols=101  Identities=19%  Similarity=0.273  Sum_probs=61.1

Q ss_pred             ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCC
Q 031554           24 VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSL  103 (157)
Q Consensus        24 ~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~  103 (157)
                      .+.++--+.-....++++|..+-+ ++...+.+.+.+.+.- ..+|.|.+-+..    .. ..+...+-++.+|+..|+.
T Consensus        10 ~~~~~lGl~~la~~l~~~G~~v~~-~d~~~~~~~l~~~~~~-~~pd~V~iS~~~----~~-~~~~~~~l~~~~k~~~p~~   82 (121)
T PF02310_consen   10 GEVHPLGLLYLAAYLRKAGHEVDI-LDANVPPEELVEALRA-ERPDVVGISVSM----TP-NLPEAKRLARAIKERNPNI   82 (121)
T ss_dssp             TSSTSHHHHHHHHHHHHTTBEEEE-EESSB-HHHHHHHHHH-TTCSEEEEEESS----ST-HHHHHHHHHHHHHTTCTTS
T ss_pred             CcchhHHHHHHHHHHHHCCCeEEE-ECCCCCHHHHHHHHhc-CCCcEEEEEccC----cC-cHHHHHHHHHHHHhcCCCC
Confidence            343333324566667888988764 3445555665554433 578998773211    11 1234555667777778889


Q ss_pred             cEEEEcCCCHhhHHHHHH--cCCCEEEEcc
Q 031554          104 DIEVDGGLGPSTIAEAAS--AGANCIVAGS  131 (157)
Q Consensus       104 ~I~vdGGI~~~~i~~~~~--~Gad~vV~GS  131 (157)
                      .+.+.|..-...-.++.+  .|+|.+|.|-
T Consensus        83 ~iv~GG~~~t~~~~~~l~~~~~~D~vv~Ge  112 (121)
T PF02310_consen   83 PIVVGGPHATADPEEILREYPGIDYVVRGE  112 (121)
T ss_dssp             EEEEEESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred             EEEEECCchhcChHHHhccCcCcceecCCC
Confidence            887777764444444444  7999999985

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=96.57  E-value=0.19  Score=39.31  Aligned_cols=120  Identities=16%  Similarity=0.182  Sum_probs=72.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-------chHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-------DNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-------~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      .++++.+.++|++.|-+..-...       ++ .+.++++++.+  .++.. +.+. ..+.++...+  ..+|.|.+..-
T Consensus        22 ~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~-~~~i~~l~~~~~~~~~~~-l~~~-~~~~i~~a~~--~g~~~i~i~~~   96 (265)
T cd03174          22 LEIAEALDEAGVDSIEVGSGASPKAVPQMEDD-WEVLRAIRKLVPNVKLQA-LVRN-REKGIERALE--AGVDEVRIFDS   96 (265)
T ss_pred             HHHHHHHHHcCCCEEEeccCcCccccccCCCH-HHHHHHHHhccCCcEEEE-EccC-chhhHHHHHh--CCcCEEEEEEe
Confidence            56788899999999999855443       45 88999999987  44433 3222 2555666664  35788776532


Q ss_pred             eC--------CCCCcccchhHHHHHHHHHhhCCCCcEEE--EcC--CCHhh----HHHHHHcCCCEEEEc
Q 031554           77 EP--------GFGGQKFMPEMMDKVRSLRNRYPSLDIEV--DGG--LGPST----IAEAASAGANCIVAG  130 (157)
Q Consensus        77 ~p--------G~~gq~~~~~~~~ki~~l~~~~~~~~I~v--dGG--I~~~~----i~~~~~~Gad~vV~G  130 (157)
                      -.        +.+-....+...+.++.+++....+.+.+  ..+  .+.+.    ++.+.++|+|.+.+-
T Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~  166 (265)
T cd03174          97 ASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK  166 (265)
T ss_pred             cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence            11        01100112334555666666654443333  444  55544    455678999998765

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=96.55  E-value=0.068  Score=46.09  Aligned_cols=118  Identities=19%  Similarity=0.272  Sum_probs=82.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe----cCCCCHH----hHHhhHhcCCCCCeEEEEee
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL----KPGTSVE----EVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l----~~~t~~~----~~~~~~~~~~~~d~vl~m~v   76 (157)
                      ..|++.+.+.|.|.+-+--...+ +.+...++.+|+.|..+-+++    +|...++    .++.+.+  .++|.|.+   
T Consensus       108 ~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~--~Gad~I~I---  182 (468)
T PRK12581        108 DKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVE--MGADSICI---  182 (468)
T ss_pred             HHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHH--cCCCEEEE---
Confidence            34788889999999887643322 233889999999999876554    3333333    2344443  47888876   


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                       ....|........+.++.+++. ++++|.+    +-|....|.-..+++|||.|=+.
T Consensus       183 -kDtaG~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~a  238 (468)
T PRK12581        183 -KDMAGILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTA  238 (468)
T ss_pred             -CCCCCCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEee
Confidence             4666777777788889998874 4666665    56777788888899999987433

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=96.51  E-value=0.15  Score=39.15  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      .+|.++.+.+.+.||+++++..+...  .. .+.++.+|+.--.+.+.-..-.+.+.++.+.+  .++|.|++++.... 
T Consensus        31 ~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~-~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~--~Gad~v~l~~~~~~-  106 (217)
T cd00331          31 FDPVEIAKAYEKAGAAAISVLTEPKYFQGS-LEDLRAVREAVSLPVLRKDFIIDPYQIYEARA--AGADAVLLIVAALD-  106 (217)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCccccCCC-HHHHHHHHHhcCCCEEECCeecCHHHHHHHHH--cCCCEEEEeeccCC-
Confidence            57899999999999999999843222  23 56777777752122222221233345555554  58999998654321 


Q ss_pred             CCcccchhHHHH-HHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           81 GGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        81 ~gq~~~~~~~~k-i~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                            +..++. +++.+..  ++...++= -+.+.+.++.+.|+|.+.+++
T Consensus       107 ------~~~~~~~~~~~~~~--g~~~~v~v-~~~~e~~~~~~~g~~~i~~t~  149 (217)
T cd00331         107 ------DEQLKELYELAREL--GMEVLVEV-HDEEELERALALGAKIIGINN  149 (217)
T ss_pred             ------HHHHHHHHHHHHHc--CCeEEEEE-CCHHHHHHHHHcCCCEEEEeC
Confidence                  122332 3333333  34332222 278889999999999998874

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins

Probab=96.51  E-value=0.11  Score=39.54  Aligned_cols=96  Identities=16%  Similarity=0.212  Sum_probs=63.8

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC--CCcEEEEcC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP--SLDIEVDGG  110 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~--~~~I~vdGG  110 (157)
                      -+-..++.+|.++ +.+.+++|.+.+...+.. ..+|+|.+-...+.     ..+...+-++.+|+..+  +++|.+.|.
T Consensus       101 ~v~~~l~~~G~~v-i~lG~~~p~~~l~~~~~~-~~~d~v~lS~~~~~-----~~~~~~~~i~~lr~~~~~~~~~i~vGG~  173 (201)
T cd02070         101 LVATMLEANGFEV-IDLGRDVPPEEFVEAVKE-HKPDILGLSALMTT-----TMGGMKEVIEALKEAGLRDKVKVMVGGA  173 (201)
T ss_pred             HHHHHHHHCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEeccccc-----cHHHHHHHHHHHHHCCCCcCCeEEEECC
Confidence            3445678889987 677889999887666554 68898876433321     13445556788888766  789999986


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  145 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~  145 (157)
                      .=.+.  .....|||.+        .+|..++.+.
T Consensus       174 ~~~~~--~~~~~GaD~~--------~~da~~av~~  198 (201)
T cd02070         174 PVNQE--FADEIGADGY--------AEDAAEAVAI  198 (201)
T ss_pred             cCCHH--HHHHcCCcEE--------ECCHHHHHHH
Confidence            54333  3345699988        4555555443

A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=96.48  E-value=0.08  Score=44.32  Aligned_cols=95  Identities=18%  Similarity=0.286  Sum_probs=62.8

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc--cchhHHHHHHHHHhh-CCCCcEEEEc
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNR-YPSLDIEVDG  109 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~--~~~~~~~ki~~l~~~-~~~~~I~vdG  109 (157)
                      +.++++|+.--.+.+. .--...+.++...+  .++|.|.+-    |.+|..  ..+.+++-+.++++. ..+++|.+||
T Consensus       214 ~di~wlr~~~~~Piiv-KgV~~~~dA~~a~~--~Gvd~I~Vs----nhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dG  286 (367)
T PLN02493        214 KDVQWLQTITKLPILV-KGVLTGEDARIAIQ--AGAAGIIVS----NHGARQLDYVPATISALEEVVKATQGRIPVFLDG  286 (367)
T ss_pred             HHHHHHHhccCCCEEe-ecCCCHHHHHHHHH--cCCCEEEEC----CCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeC
Confidence            4577788763323222 11134555555555  589999773    333322  234467777777664 3568999999


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          110 GLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ||+ ..++-..+..|||.+-+|+.+.
T Consensus       287 GIr~G~Dv~KALALGA~aV~iGr~~l  312 (367)
T PLN02493        287 GVRRGTDVFKALALGASGIFIGRPVV  312 (367)
T ss_pred             CcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            999 5788888899999999998754

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=96.46  E-value=0.16  Score=40.26  Aligned_cols=123  Identities=20%  Similarity=0.234  Sum_probs=84.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--AN   66 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~   66 (157)
                      .+.++.+.++|+|.+.+..-..+.               .+.+.++++|+.|..+.+.+  .+.++.+.+.++.+.  -.
T Consensus        72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~  151 (259)
T cd07939          72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEA  151 (259)
T ss_pred             HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHC
Confidence            346788899999999987533321               12578889999998776544  333456555544431  13


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      ++|.|.+    +.+.|.....+..+.++.+++..+ +++.+    |-|....|.-...++|++.|  -+++.+
T Consensus       152 G~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~v--d~s~~G  217 (259)
T cd07939         152 GADRLRF----ADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHV--SVTVNG  217 (259)
T ss_pred             CCCEEEe----CCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEE--EEeccc
Confidence            6787765    566777777778888898988765 66655    55677788888889999975  445553

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=96.44  E-value=0.027  Score=45.96  Aligned_cols=129  Identities=19%  Similarity=0.355  Sum_probs=73.8

Q ss_pred             cChHHHHHH---HHhCCCCEEEEcccCC----------------cchHHHHHHHHHHc-CCceEEEec--CCCC----HH
Q 031554            3 TNPLDYVEP---LGKAGASGFTFHVEIS----------------KDNWQELVQRIKSK-GMRPGVALK--PGTS----VE   56 (157)
Q Consensus         3 ~~p~~~i~~---~~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~-g~~~gl~l~--~~t~----~~   56 (157)
                      .||+.+.+.   +.+.|+|.|-+-.-.+                .+.+.++++.+++. +..+.+-+.  .+.+    ++
T Consensus        63 ~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~  142 (309)
T PF01207_consen   63 NDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIE  142 (309)
T ss_dssp             S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHH
T ss_pred             ccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHH
Confidence            567666544   3445888887764322                12337788888875 555555442  2322    22


Q ss_pred             hHHhhHhcCCCCCeEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEcccc
Q 031554           57 EVYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSV  133 (157)
Q Consensus        57 ~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~GSai  133 (157)
                      .++.+. . .+++.|.+   |+-+..|.+. +..++.|+++++..+ ++|.+=|+|+ .+.+.++.+. |+|++-+|++.
T Consensus       143 ~~~~l~-~-~G~~~i~v---H~Rt~~q~~~~~a~w~~i~~i~~~~~-ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRga  216 (309)
T PF01207_consen  143 FARILE-D-AGVSAITV---HGRTRKQRYKGPADWEAIAEIKEALP-IPVIANGDIFSPEDAERMLEQTGADGVMIGRGA  216 (309)
T ss_dssp             HHHHHH-H-TT--EEEE---ECS-TTCCCTS---HHHHHHCHHC-T-SEEEEESS--SHHHHHHHCCCH-SSEEEESHHH
T ss_pred             HHHHhh-h-cccceEEE---ecCchhhcCCcccchHHHHHHhhccc-ceeEEcCccCCHHHHHHHHHhcCCcEEEEchhh
Confidence            233333 2 56777755   5555566654 567888898888764 9999999999 7899887666 99999999987


Q ss_pred             cCCC
Q 031554          134 FGAP  137 (157)
Q Consensus       134 ~~~~  137 (157)
                      ++.|
T Consensus       217 l~nP  220 (309)
T PF01207_consen  217 LGNP  220 (309)
T ss_dssp             CC-C
T ss_pred             hhcC
Confidence            6544

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=96.41  E-value=0.086  Score=42.47  Aligned_cols=118  Identities=21%  Similarity=0.298  Sum_probs=82.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc------------c---hHHHHHHHHHHcCCceEEEec----C-CCCHHhHHhhHhc-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK------------D---NWQELVQRIKSKGMRPGVALK----P-GTSVEEVYPLVEG-   64 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~------------~---~~~~~i~~ir~~g~~~gl~l~----~-~t~~~~~~~~~~~-   64 (157)
                      ..-++.+.++|++.|.+-.-.++            +   .+.+.+++++++|.++-+.+.    | .++.+.+.++.+. 
T Consensus        77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~  156 (280)
T cd07945          77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFL  156 (280)
T ss_pred             HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHH
Confidence            34578889999999888752221            1   124558889999998877654    2 3455555444431 


Q ss_pred             -CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           65 -ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        65 -~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                       -.++|.|.+    +.+.|........+.++.+++..++.+|.+    |-|....|.-...++||+.|
T Consensus       157 ~~~G~~~i~l----~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~v  220 (280)
T cd07945         157 SDLPIKRIML----PDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGL  220 (280)
T ss_pred             HHcCCCEEEe----cCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEE
Confidence             136787765    566777777778888999988777776665    66788888888899999976

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase

Probab=96.39  E-value=0.23  Score=39.33  Aligned_cols=123  Identities=15%  Similarity=0.155  Sum_probs=73.6

Q ss_pred             HHHHHHHhCCCCEEEEcc-cCCcchHHHHHH--------------------------HHHHcCCc--eEEEecCCCCHHh
Q 031554            7 DYVEPLGKAGASGFTFHV-EISKDNWQELVQ--------------------------RIKSKGMR--PGVALKPGTSVEE   57 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~-e~~~~~~~~~i~--------------------------~ir~~g~~--~gl~l~~~t~~~~   57 (157)
                      ..+..+.++|++.|.++. ++.++. .+.++                          +.+..+-.  +.+.|....-++.
T Consensus        75 ~~i~r~LD~Ga~gIivP~v~taeea-~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n  153 (249)
T TIGR03239        75 VIIKRLLDIGFYNFLIPFVESAEEA-ERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDN  153 (249)
T ss_pred             HHHHHHhcCCCCEEEecCcCCHHHH-HHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHh
Confidence            466788899999999984 332322 43432                          22222223  3444533334566


Q ss_pred             HHhhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           58 VYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        58 ~~~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +.+++.. +.+|.+.+...    .-|..++...++....+.++....  .++...+ ..-+++.++.+.+.|++.+++|+
T Consensus       154 ~~eI~av-~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~-~~~~~~~~~~~~~~G~~~~~~~~  231 (249)
T TIGR03239       154 VDEIAAV-DGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGI-LAPVEADARRYLEWGATFVAVGS  231 (249)
T ss_pred             HHHHhCC-CCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEE-cCCCHHHHHHHHHcCCCEEEEhH
Confidence            7888765 77999988632    224445544455544444433221  2454433 34578899999999999999997


Q ss_pred             c
Q 031554          132 S  132 (157)
Q Consensus       132 a  132 (157)
                      .
T Consensus       232 D  232 (249)
T TIGR03239       232 D  232 (249)
T ss_pred             H
Confidence            4

In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=96.39  E-value=0.13  Score=45.64  Aligned_cols=117  Identities=16%  Similarity=0.239  Sum_probs=79.7

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEE----ecCCCCHHhHHhhHh-c-CCCCCeEEEEeeeCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVA----LKPGTSVEEVYPLVE-G-ANPVEMVLVMTVEPG   79 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~----l~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~pG   79 (157)
                      .|++.+.++|.|++.+-.-..+ +.+...++.+|++|..+-.+    .+|....+.+.++.+ + ..++|.|.+    ..
T Consensus       101 ~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i----~D  176 (593)
T PRK14040        101 RFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCI----KD  176 (593)
T ss_pred             HHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEE----CC
Confidence            4688899999999887743222 12368999999999975333    245443443333332 1 147888876    46


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                      ..|........+.++.+++.. +++|.+    |-|....|.-..+++|||.|=
T Consensus       177 t~G~l~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAGa~~vD  228 (593)
T PRK14040        177 MAGLLKPYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAGIDGVD  228 (593)
T ss_pred             CCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcCCCEEE
Confidence            667776777788899988865 455554    667878888888999999873

>TIGR02814 pfaD_fam PfaD family protein

Probab=96.37  E-value=0.054  Score=46.40  Aligned_cols=33  Identities=36%  Similarity=0.571  Sum_probs=29.7

Q ss_pred             CCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          102 SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       102 ~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      .++|.+.|||. .+.+......|||.+.+||...
T Consensus       224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl  257 (444)
T TIGR02814       224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ  257 (444)
T ss_pred             CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence            47899999995 8999999999999999999755

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>PRK14566 triosephosphate isomerase; Provisional

Probab=96.37  E-value=0.13  Score=41.18  Aligned_cols=127  Identities=19%  Similarity=0.251  Sum_probs=75.4

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhc-CCCC----
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEG-ANPV----   68 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~-~~~~----   68 (157)
                      .+++.++|++++.+.        .|. ++.+..-++.+.++|+.+.+-+.-..       ..+.+.+.++. +...    
T Consensus        88 ~~mL~d~G~~~viiGHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~  166 (260)
T PRK14566         88 GQMLKDAGCRYVIIGHSERRRMYGET-SNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMA  166 (260)
T ss_pred             HHHHHHcCCCEEEECcccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhccchhh
Confidence            468899999999987        233 22336678889999999888775221       12222222210 0211    


Q ss_pred             -CeEEEEeeeC----CCCCcccchhHHHH-HHHHHhh--------CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcccc
Q 031554           69 -EMVLVMTVEP----GFGGQKFMPEMMDK-VRSLRNR--------YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSV  133 (157)
Q Consensus        69 -d~vl~m~v~p----G~~gq~~~~~~~~k-i~~l~~~--------~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai  133 (157)
                       +-+ +..=+|    |+ |+.-.++..+. ...+|+.        ..+++|.-.|.++++|+.++ ....+|++-+|++-
T Consensus       167 ~~~i-vIAYEPvWAIGT-G~~At~e~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGgAS  244 (260)
T PRK14566        167 FDNA-IIAYEPLWAVGT-GKSATPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGAS  244 (260)
T ss_pred             cCcE-EEEECcHHhcCC-CCCCCHHHHHHHHHHHHHHHHhcCccccccceEEecCCCCHhHHHHHhcCCCCCeEEechHh
Confidence             111 223356    44 44334433222 2333331        13579999999999999886 45569999999987


Q ss_pred             cCCCC
Q 031554          134 FGAPE  138 (157)
Q Consensus       134 ~~~~d  138 (157)
                      ...++
T Consensus       245 L~~~~  249 (260)
T PRK14566        245 LNSTE  249 (260)
T ss_pred             cCHHH
Confidence            65433

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=96.36  E-value=0.07  Score=44.03  Aligned_cols=134  Identities=22%  Similarity=0.326  Sum_probs=76.8

Q ss_pred             HHHHHhCCCCEEEEcccCC---------------c----------chHHHHHHHHHHc-CCc--eEEEecCCCCH-----
Q 031554            9 VEPLGKAGASGFTFHVEIS---------------K----------DNWQELVQRIKSK-GMR--PGVALKPGTSV-----   55 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~---------------~----------~~~~~~i~~ir~~-g~~--~gl~l~~~t~~-----   55 (157)
                      ...+.++|.|.|-+|.-..               |          ....++++.+|+. |-.  +|+=+++....     
T Consensus       155 A~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~  234 (341)
T PF00724_consen  155 ARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGIT  234 (341)
T ss_dssp             HHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHH
T ss_pred             HHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCc
Confidence            3456889999999995221               0          1226788888886 444  57778876532     


Q ss_pred             -HhH---HhhHhcCCCCCeEEEE------eeeCCCC-Ccccch-hHHHHHHHHHhhCCCCcEEEEcCCCH-hhHHHHHHc
Q 031554           56 -EEV---YPLVEGANPVEMVLVM------TVEPGFG-GQKFMP-EMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASA  122 (157)
Q Consensus        56 -~~~---~~~~~~~~~~d~vl~m------~v~pG~~-gq~~~~-~~~~ki~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~  122 (157)
                       +..   .++++- ..+|++-+.      ...|... ...+.+ ..+...+.+|+.. +.++.+.||++. +.+.++++.
T Consensus       235 ~~e~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~  312 (341)
T PF00724_consen  235 LEETIEIAKLLEE-LGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV-KIPVIGVGGIRTPEQAEKALEE  312 (341)
T ss_dssp             SHHHHHHHHHHHH-HHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH-SSEEEEESSTTHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHH-Hhhhhccccccccccccccccccccccccchhhhhhhhhhhhc-CceEEEEeeecchhhhHHHHhc
Confidence             211   222221 234555321      1122111 111111 1233445555543 678889999995 557777666


Q ss_pred             C-CCEEEEcccccCCCCHHHHHH
Q 031554          123 G-ANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus       123 G-ad~vV~GSai~~~~d~~~~~~  144 (157)
                      | +|.+.+|+++...||+-..++
T Consensus       313 g~~DlV~~gR~~ladPd~~~k~~  335 (341)
T PF00724_consen  313 GKADLVAMGRPLLADPDLPNKAR  335 (341)
T ss_dssp             TSTSEEEESHHHHH-TTHHHHHH
T ss_pred             CCceEeeccHHHHhCchHHHHHH
Confidence            6 999999999988888765443

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=96.35  E-value=0.2  Score=40.10  Aligned_cols=117  Identities=19%  Similarity=0.240  Sum_probs=79.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEE---Ee--cCCCCHHhHHhhHhc--
Q 031554            7 DYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGV---AL--KPGTSVEEVYPLVEG--   64 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl---~l--~~~t~~~~~~~~~~~--   64 (157)
                      ..++.+.++|++.|.+-.-+.+               +.+.+.++++|++|..+.+   .+  .+.++.+.+.++.+.  
T Consensus        82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~  161 (273)
T cd07941          82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAA  161 (273)
T ss_pred             HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHH
Confidence            4678899999999887422211               1226788899999998766   22  123455554444321  


Q ss_pred             CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           65 ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        65 ~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      -.++|.|.+    +.+.|........+.++.+++..++.+|.+    |-|....|.-...++||+.|
T Consensus       162 ~~g~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~i  224 (273)
T cd07941         162 EAGADWLVL----CDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQV  224 (273)
T ss_pred             hCCCCEEEE----ecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEE
Confidence            136887765    566677767777778899988877666665    66788888888889999976

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=96.27  E-value=0.2  Score=40.60  Aligned_cols=121  Identities=13%  Similarity=0.175  Sum_probs=69.5

Q ss_pred             HHHHHHHHhCCCCEEEE----------cc--------cCCcchHHHHHHHHHHcCCceEEEecCCC-----------CHH
Q 031554            6 LDYVEPLGKAGASGFTF----------HV--------EISKDNWQELVQRIKSKGMRPGVALKPGT-----------SVE   56 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~v----------h~--------e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-----------~~~   56 (157)
                      .+.++.+.++|+..+++          |.        ...++- .+.|+.+++.....-+.|+..|           -++
T Consensus        95 ~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~-~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~  173 (285)
T TIGR02320        95 RRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEF-CGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALK  173 (285)
T ss_pred             HHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHH-HHHHHHHHHhccCCCeEEEEecccccccCCHHHHHH
Confidence            34588999999999999          11        111111 4445555544111223333222           235


Q ss_pred             hHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           57 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        57 ~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      +.+.|.+  .+.|.|.+.    +  +..-..+..+-.++++..+|+.++.+-.+-+ .-++.+|.+.|++.++.|+..+.
T Consensus       174 Ra~ay~e--AGAD~ifv~----~--~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~  245 (285)
T TIGR02320       174 RAEAYAE--AGADGIMIH----S--RKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLR  245 (285)
T ss_pred             HHHHHHH--cCCCEEEec----C--CCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHH
Confidence            5667776  589999874    2  1111233444455555555666665433322 23688888999999999987764

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK07094 biotin synthase; Provisional

Probab=96.26  E-value=0.15  Score=41.46  Aligned_cols=124  Identities=18%  Similarity=0.247  Sum_probs=78.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc----------h---HHHHHHHHHHcCCceEE--Eec-CCCCHHhHHhhHhc--CCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD----------N---WQELVQRIKSKGMRPGV--ALK-PGTSVEEVYPLVEG--ANP   67 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~----------~---~~~~i~~ir~~g~~~gl--~l~-~~t~~~~~~~~~~~--~~~   67 (157)
                      ...++.+.++|++.+.+..|+.+.          +   +.+.++.++++|+.++.  .+. |....+.+...++.  .-+
T Consensus       129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~  208 (323)
T PRK07094        129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD  208 (323)
T ss_pred             HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCC
Confidence            457889999999999998887631          1   24567788888987644  444 45555444333321  135


Q ss_pred             CCeEEEEeee--CCCCCccc----chhHHHHHHHHHhhCCCCcEEEEcCC---CHhhHHHHHHcCCCEEEE
Q 031554           68 VEMVLVMTVE--PGFGGQKF----MPEMMDKVRSLRNRYPSLDIEVDGGL---GPSTIAEAASAGANCIVA  129 (157)
Q Consensus        68 ~d~vl~m~v~--pG~~gq~~----~~~~~~ki~~l~~~~~~~~I~vdGGI---~~~~i~~~~~~Gad~vV~  129 (157)
                      +|.+.++...  ||+.-...    ..+.++.++.+|-..|+..|.+.++.   .++-......+|||.+..
T Consensus       209 ~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~  279 (323)
T PRK07094        209 LDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMP  279 (323)
T ss_pred             CCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecC
Confidence            6777665544  45432111    23456667777778888777666654   455556788999998754

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=96.20  E-value=0.096  Score=40.60  Aligned_cols=115  Identities=24%  Similarity=0.336  Sum_probs=78.4

Q ss_pred             HHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEec--CCCCHHhHHhhHhc--CCCCC
Q 031554            9 VEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALK--PGTSVEEVYPLVEG--ANPVE   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~--~~t~~~~~~~~~~~--~~~~d   69 (157)
                      ++.+.++|+|.+.+.....+               +.+.+.++.+|++|.++.+.+.  +.++.+.+.++.+.  -.++|
T Consensus        73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~  152 (237)
T PF00682_consen   73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGAD  152 (237)
T ss_dssp             HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-S
T ss_pred             HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCe
Confidence            45556799999999876655               1227789999999999977652  33455555444431  12788


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      .|.+    +.+.|...+....+.++.+++..++.+|.+    |-|.-..|.-...++|||.|
T Consensus       153 ~i~l----~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~i  210 (237)
T PF00682_consen  153 IIYL----ADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRI  210 (237)
T ss_dssp             EEEE----EETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEE
T ss_pred             EEEe----eCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEE
Confidence            8866    455566656667778999999877676665    66777888888899999996

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>PRK15108 biotin synthase; Provisional

Probab=96.19  E-value=0.43  Score=39.57  Aligned_cols=129  Identities=18%  Similarity=0.242  Sum_probs=80.2

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc------------hHHHHHHHHHHcCCceE--EEecCCCCHHhHHhhH-hc--C-CC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD------------NWQELVQRIKSKGMRPG--VALKPGTSVEEVYPLV-EG--A-NP   67 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~------------~~~~~i~~ir~~g~~~g--l~l~~~t~~~~~~~~~-~~--~-~~   67 (157)
                      ...++.+.++|+|.+++-.|+.+.            ...++++.+++.|+.++  +.+......+.+.+.+ .+  + ..
T Consensus       136 ~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~  215 (345)
T PRK15108        136 ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTP  215 (345)
T ss_pred             HHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCC
Confidence            567888999999999887666421            22567778888888764  4455454443322222 11  0 13


Q ss_pred             CCeEEEEeee--CCCCCccc----chhHHHHHHHHHhhCCCCcEEEEcCCC---HhhHHHHHHcCCCEEEEccccc
Q 031554           68 VEMVLVMTVE--PGFGGQKF----MPEMMDKVRSLRNRYPSLDIEVDGGLG---PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        68 ~d~vl~m~v~--pG~~gq~~----~~~~~~ki~~l~~~~~~~~I~vdGGI~---~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ++.|-+.-..  ||+.-...    ..+.++.|.-.|=..|+..|-+.||-.   .+..+....+|||.+++|-++.
T Consensus       216 ~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~l  291 (345)
T PRK15108        216 PESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLL  291 (345)
T ss_pred             CCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccc
Confidence            5666554443  45431111    123455566666667888888888862   3455677899999999998743

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=96.18  E-value=0.16  Score=38.79  Aligned_cols=114  Identities=18%  Similarity=0.218  Sum_probs=67.6

Q ss_pred             HHHHHHHhCCCCEEEEcccCC---c---chHHHHHHHHHHc--CCceEE--EecCCCCHHhHHhhHhc--CCCCCeEEEE
Q 031554            7 DYVEPLGKAGASGFTFHVEIS---K---DNWQELVQRIKSK--GMRPGV--ALKPGTSVEEVYPLVEG--ANPVEMVLVM   74 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~---~---~~~~~~i~~ir~~--g~~~gl--~l~~~t~~~~~~~~~~~--~~~~d~vl~m   74 (157)
                      .-++.+.+.|||-|-++....   .   +.+.+.+..+++.  |+..-+  ....-+ .+.+....++  -.++|+|=. 
T Consensus        73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~-~~~i~~a~ria~e~GaD~IKT-  150 (203)
T cd00959          73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLT-DEEIIKACEIAIEAGADFIKT-  150 (203)
T ss_pred             HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC-HHHHHHHHHHHHHhCCCEEEc-
Confidence            347788999999999985432   1   1124555555554  333322  222222 2333332221  158998843 


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                        ..||....   ..++.++.+++.. .+++|-+.|||+ .+++.++.++|++-+
T Consensus       151 --sTG~~~~~---at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~ri  200 (203)
T cd00959         151 --STGFGPGG---ATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRI  200 (203)
T ss_pred             --CCCCCCCC---CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence              35554322   3444444444432 468999999999 788999999999876

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=96.18  E-value=0.21  Score=41.82  Aligned_cols=117  Identities=17%  Similarity=0.185  Sum_probs=82.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--AN   66 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~   66 (157)
                      ...++.+.++|++.|.+-.-..+               +.+.+.++++++.|..+-+.+  ...++.+.+.++.+.  -.
T Consensus        78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~  157 (378)
T PRK11858         78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA  157 (378)
T ss_pred             HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC
Confidence            45688899999999888765544               223568889999999877654  233556655555431  13


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      ++|.|.+    +.+.|.....+..+.++.+++.. +++|.+    |-|.-..|.-..+++||+.|
T Consensus       158 Ga~~I~l----~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~v  217 (378)
T PRK11858        158 GADRVRF----CDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQV  217 (378)
T ss_pred             CCCEEEE----eccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEE
Confidence            6787765    56667777777788888888765 566665    55777777777889999976

>KOG0538 consensus Glycolate oxidase [Energy production and conversion]

Probab=96.15  E-value=0.2  Score=41.03  Aligned_cols=115  Identities=17%  Similarity=0.268  Sum_probs=74.6

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGG  110 (157)
                      =+-|+++|+.-..+.+.=..-|-.+....+-   .+++.|++  .+-|..-+.+.+..++-+.++-+.. ..+++..|||
T Consensus       212 W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave---~G~~GIIV--SNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGG  286 (363)
T KOG0538|consen  212 WKDIKWLRSITKLPIVVKGVLTGEDARKAVE---AGVAGIIV--SNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGG  286 (363)
T ss_pred             hhhhHHHHhcCcCCeEEEeecccHHHHHHHH---hCCceEEE--eCCCccccCcccchHHHHHHHHHHhcCceEEEEecC
Confidence            3567777777655655422223333333333   57888876  3556555555667777777776543 4589999999


Q ss_pred             CCH-hhHHHHHHcCCCEEEEccc-ccCC-----CCHHHHHHHHHHHHH
Q 031554          111 LGP-STIAEAASAGANCIVAGSS-VFGA-----PEPAHVISLMRKSVE  151 (157)
Q Consensus       111 I~~-~~i~~~~~~Gad~vV~GSa-i~~~-----~d~~~~~~~l~~~~~  151 (157)
                      ++. .++-..+..||.++-+|+- +|+-     .-.++.++-|++.++
T Consensus       287 VR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe  334 (363)
T KOG0538|consen  287 VRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFE  334 (363)
T ss_pred             cccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHHHH
Confidence            995 7788888999999999985 4542     234566666666554

>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed

Probab=96.11  E-value=0.32  Score=39.28  Aligned_cols=44  Identities=14%  Similarity=0.042  Sum_probs=33.2

Q ss_pred             HHHHHHHH--hCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe
Q 031554            6 LDYVEPLG--KAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL   49 (157)
Q Consensus         6 ~~~i~~~~--~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l   49 (157)
                      ..|.+.++  +.|+|.+|+|.-.-.+.+..+++..+++|..+++.+
T Consensus       103 ~~ya~a~~~~~~g~DavTVhp~~G~d~l~~~~~~~~~~~k~vfVlv  148 (278)
T PRK00125        103 EAYAKAAFESPLEADAVTVSPYMGFDSLEPYLEYAEEHGKGVFVLC  148 (278)
T ss_pred             HHHHHHHhcCccCCcEEEECCcCCHHHHHHHHHHHHhcCCEEEEEE
Confidence            45777788  689999999975555555778888888887666655

>PRK05826 pyruvate kinase; Provisional

Probab=96.10  E-value=0.46  Score=41.06  Aligned_cols=140  Identities=11%  Similarity=0.206  Sum_probs=87.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      ..+..+.+.|+|+|.++.-...+.+.++.+++.+.|. .+.+.  |....-++.+.+++   ..+|.|++-   ||--|.
T Consensus       177 ~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~---~~~DgImIg---rgDLg~  250 (465)
T PRK05826        177 ADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEII---EASDGIMVA---RGDLGV  250 (465)
T ss_pred             HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHH---HHcCEEEEC---cchhhh
Confidence            3567789999999999954444333777777877776 55554  44444567788888   678999875   442222


Q ss_pred             cc----chhHHHHHHHHHhhCCCCcEEEE----------cCCCHhh---HHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554           84 KF----MPEMMDKVRSLRNRYPSLDIEVD----------GGLGPST---IAEAASAGANCIVAGSSVFGAPEPAHVISLM  146 (157)
Q Consensus        84 ~~----~~~~~~ki~~l~~~~~~~~I~vd----------GGI~~~~---i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l  146 (157)
                      ..    .+...++|-+..+. .+.++.++          .=-|...   +...+--|+|++.+..-=-.-..|.++++.+
T Consensus       251 elg~~~v~~~qk~Ii~~c~~-~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m  329 (465)
T PRK05826        251 EIPDEEVPGLQKKIIRKARE-AGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAM  329 (465)
T ss_pred             hcCcHhHHHHHHHHHHHHHH-cCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHH
Confidence            22    23344454444443 25565555          2222233   3334556999999874333236889999999


Q ss_pred             HHHHHHH
Q 031554          147 RKSVEDA  153 (157)
Q Consensus       147 ~~~~~~~  153 (157)
                      +++.+.+
T Consensus       330 ~~I~~~a  336 (465)
T PRK05826        330 ARICKGA  336 (465)
T ss_pred             HHHHHHH
Confidence            9988754

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.03  E-value=0.25  Score=45.13  Aligned_cols=126  Identities=10%  Similarity=0.111  Sum_probs=77.9

Q ss_pred             HHHHhCCCCEEEEccc---------CCc----------------chHHHHHHHHHHc---CCceEEEecCCC------CH
Q 031554           10 EPLGKAGASGFTFHVE---------ISK----------------DNWQELVQRIKSK---GMRPGVALKPGT------SV   55 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e---------~~~----------------~~~~~~i~~ir~~---g~~~gl~l~~~t------~~   55 (157)
                      ..+.++|+|+|-+|.-         ++-                ....++++.+|+.   ++.+++=+++..      +.
T Consensus       558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~  637 (765)
T PRK08255        558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP  637 (765)
T ss_pred             HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH
Confidence            4457789999999965         210                1125788889885   356777677532      23


Q ss_pred             Hh---HHhhHhcCCCCCeEEEEeeeCCCCCcccc---h-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCE
Q 031554           56 EE---VYPLVEGANPVEMVLVMTVEPGFGGQKFM---P-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANC  126 (157)
Q Consensus        56 ~~---~~~~~~~~~~~d~vl~m~v~pG~~gq~~~---~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~  126 (157)
                      +.   +.+.++- .++|+|-+-+  .++..+...   + ......+++|+.. ++++.+-|+|+ ++++.++++.| +|.
T Consensus       638 ~~~~~~~~~l~~-~g~d~i~vs~--g~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pv~~~G~i~~~~~a~~~l~~g~~D~  713 (765)
T PRK08255        638 DDAVEIARAFKA-AGADLIDVSS--GQVSKDEKPVYGRMYQTPFADRIRNEA-GIATIAVGAISEADHVNSIIAAGRADL  713 (765)
T ss_pred             HHHHHHHHHHHh-cCCcEEEeCC--CCCCcCCCCCcCccccHHHHHHHHHHc-CCEEEEeCCCCCHHHHHHHHHcCCcce
Confidence            32   2223322 3688886631  111111000   0 1122345555553 67899999996 79999988765 999


Q ss_pred             EEEcccccCCCCH
Q 031554          127 IVAGSSVFGAPEP  139 (157)
Q Consensus       127 vV~GSai~~~~d~  139 (157)
                      +-+|+.+...|++
T Consensus       714 v~~gR~~l~dP~~  726 (765)
T PRK08255        714 CALARPHLADPAW  726 (765)
T ss_pred             eeEcHHHHhCccH
Confidence            9999999987765

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.02  E-value=0.043  Score=47.77  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=54.6

Q ss_pred             eEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcC
Q 031554           45 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG  123 (157)
Q Consensus        45 ~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~G  123 (157)
                      +|-++++....+.++.+.+  .++|.|.+- +.||..     ...++.|+++|+.+++-.....|.| +.+.+..+.++|
T Consensus       234 V~~av~~~~~~~ra~~Lv~--aGvd~i~vd-~a~g~~-----~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG  305 (502)
T PRK07107        234 VGAGINTRDYAERVPALVE--AGADVLCID-SSEGYS-----EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG  305 (502)
T ss_pred             eeeccChhhHHHHHHHHHH--hCCCeEeec-Cccccc-----HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC
Confidence            4556665544577777775  589999874 444422     3457788999988764233355555 489999999999


Q ss_pred             CCEEEEc
Q 031554          124 ANCIVAG  130 (157)
Q Consensus       124 ad~vV~G  130 (157)
                      ||++.+|
T Consensus       306 Ad~I~vg  312 (502)
T PRK07107        306 ADFVKVG  312 (502)
T ss_pred             CCEEEEC
Confidence            9999994

>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional

Probab=96.01  E-value=0.45  Score=37.86  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             HHHHHHHhCCCCEEEEcc-cCCcchHHHHHHH--------------------------HHHcCCc--eEEEecCCCCHHh
Q 031554            7 DYVEPLGKAGASGFTFHV-EISKDNWQELVQR--------------------------IKSKGMR--PGVALKPGTSVEE   57 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~-e~~~~~~~~~i~~--------------------------ir~~g~~--~gl~l~~~t~~~~   57 (157)
                      .++..+.+.|++.|.++. ++.++. .++++.                          .+..+-.  +.+.|....-++.
T Consensus        82 ~~i~r~LD~Ga~giivP~v~tae~a-~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~n  160 (256)
T PRK10558         82 VIIKRLLDIGFYNFLIPFVETAEEA-RRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDN  160 (256)
T ss_pred             HHHHHHhCCCCCeeeecCcCCHHHH-HHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHH
Confidence            466788899999999984 333332 443332                          2222223  3334533334566


Q ss_pred             HHhhHhcCCCCCeEEEEeee----CCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           58 VYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        58 ~~~~~~~~~~~d~vl~m~v~----pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +++++.. +.+|.+.+...+    -|..++...++....+.++....  .++...+ ..-+++.++.+.+.|++.++.|+
T Consensus       161 i~eI~av-~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~-~~~~~~~~~~~~~~G~~~v~~~~  238 (256)
T PRK10558        161 VDAIAAT-EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGI-LAPVEADARRYLEWGATFVAVGS  238 (256)
T ss_pred             HHHHhCC-CCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEE-cCCCHHHHHHHHHcCCCEEEEch
Confidence            7787765 679999886432    23334444455444444433221  2444432 34567889999999999999997


Q ss_pred             c
Q 031554          132 S  132 (157)
Q Consensus       132 a  132 (157)
                      .
T Consensus       239 D  239 (256)
T PRK10558        239 D  239 (256)
T ss_pred             H
Confidence            4

>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form

Probab=96.01  E-value=0.56  Score=37.48  Aligned_cols=138  Identities=20%  Similarity=0.253  Sum_probs=82.6

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc----chHHHHHHHHH-HcCCceEEEecC-CCCHHhHHhhHh-c-CCCCCeEEEEeeeC
Q 031554            7 DYVEPLGKAGASGFTFHVEISK----DNWQELVQRIK-SKGMRPGVALKP-GTSVEEVYPLVE-G-ANPVEMVLVMTVEP   78 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~----~~~~~~i~~ir-~~g~~~gl~l~~-~t~~~~~~~~~~-~-~~~~d~vl~m~v~p   78 (157)
                      +-++.+.+.|+|+|+|-.-+..    .+ ..+.+.++ +.|+.+..=+.. +.+-..++.++. + ..+++-|++++-+|
T Consensus        19 ~~~~~l~~~~pd~isvT~~~~~~~~~~t-~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~   97 (272)
T TIGR00676        19 ETVDRLSPLDPDFVSVTYGAGGSTRDRT-VRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDP   97 (272)
T ss_pred             HHHHHHhcCCCCEEEeccCCCCCcHHHH-HHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3467788999999999865442    24 55667777 458887664432 233333444332 1 25789888887765


Q ss_pred             CCCC-----cccchhHHHHHHHHHhhCCCCcEEEEc-------CCCH-hhHH---HHHHcCCCEEEEcccccCCCCHHHH
Q 031554           79 GFGG-----QKFMPEMMDKVRSLRNRYPSLDIEVDG-------GLGP-STIA---EAASAGANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus        79 G~~g-----q~~~~~~~~ki~~l~~~~~~~~I~vdG-------GI~~-~~i~---~~~~~Gad~vV~GSai~~~~d~~~~  142 (157)
                      -.++     ..|. ...+-|+.+++.+.++.|.+.|       .-+. +.+.   .=.++||| +++-=.+|..+...+.
T Consensus        98 ~~~~~~~~~~~f~-~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~-f~iTQ~~fd~~~~~~~  175 (272)
T TIGR00676        98 PKGEGTPTPGGFN-YASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGAD-YAITQLFFDNDDYYRF  175 (272)
T ss_pred             CCCCCCCCCCCCC-CHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC-eEeeccccCHHHHHHH
Confidence            4322     2344 5777888888876677777666       1121 2223   22579999 6666677754444444


Q ss_pred             HHHHH
Q 031554          143 ISLMR  147 (157)
Q Consensus       143 ~~~l~  147 (157)
                      ++.++
T Consensus       176 ~~~~~  180 (272)
T TIGR00676       176 VDRCR  180 (272)
T ss_pred             HHHHH
Confidence            44443

This protein is an FAD-containing flavoprotein.

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=95.98  E-value=0.096  Score=43.55  Aligned_cols=119  Identities=13%  Similarity=0.091  Sum_probs=80.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc------------ch---HHHHHHHHHHcCCceEEEec-----C---CCCHHhHHhhH
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK------------DN---WQELVQRIKSKGMRPGVALK-----P---GTSVEEVYPLV   62 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~------------~~---~~~~i~~ir~~g~~~gl~l~-----~---~t~~~~~~~~~   62 (157)
                      .+-++.+.++|+|.|.+-.-+++            +.   +.+.++++|++|.++...+.     |   .++.+.+.++.
T Consensus       124 ~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~  203 (347)
T PLN02746        124 LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVA  203 (347)
T ss_pred             HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHH
Confidence            35678899999999888732221            11   14688889999998864442     2   23444443333


Q ss_pred             hc--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           63 EG--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        63 ~~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                      +.  -.++|.|.+    +.+.|.....+..+.++.+++..+..+|.+    |-|....|.-..+++||+.|=
T Consensus       204 ~~~~~~Gad~I~l----~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd  271 (347)
T PLN02746        204 KELYDMGCYEISL----GDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVD  271 (347)
T ss_pred             HHHHHcCCCEEEe----cCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence            21  147888766    566777777778888999988765445554    678888888888999999873

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=95.98  E-value=0.28  Score=40.87  Aligned_cols=117  Identities=19%  Similarity=0.218  Sum_probs=81.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--AN   66 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~   66 (157)
                      .+-++.+.++|++.|.+..-..+               +.+.+.++++|++|..+-+.+  .+.++.+.+.++.+.  -.
T Consensus        75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~  154 (365)
T TIGR02660        75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEA  154 (365)
T ss_pred             HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHc
Confidence            34678899999999888865543               112478889999998876654  233455555444431  13


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      ++|.|.+    |.+.|........+.++.+++.. +++|.+    |-|....|.-...++||+.|
T Consensus       155 Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~-~v~l~~H~HNd~GlA~ANalaA~~aGa~~v  214 (365)
T TIGR02660       155 GADRFRF----ADTVGILDPFSTYELVRALRQAV-DLPLEMHAHNDLGMATANTLAAVRAGATHV  214 (365)
T ss_pred             CcCEEEE----cccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence            6887765    67777777777777888888764 355554    77888888888889999976

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=95.96  E-value=0.21  Score=36.45  Aligned_cols=122  Identities=18%  Similarity=0.228  Sum_probs=71.9

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc----hHH-HHHHHHH-HcCCceEEEecCCCCHHhHH----hhHhcCCCCCeEEE
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD----NWQ-ELVQRIK-SKGMRPGVALKPGTSVEEVY----PLVEGANPVEMVLV   73 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~----~~~-~~i~~ir-~~g~~~gl~l~~~t~~~~~~----~~~~~~~~~d~vl~   73 (157)
                      ++..+++.+.+.|++.+.+.......    ... +.+..++ ..+..+++.+....+.+...    ...+  .+.|.|.+
T Consensus        13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~g~d~v~l   90 (200)
T cd04722          13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARA--AGADGVEI   90 (200)
T ss_pred             HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHH--cCCCEEEE
Confidence            56778889999999999988422111    101 1244444 45676677665555554332    2222  58899988


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHH-HHHcCCCEEEEccc
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAE-AASAGANCIVAGSS  132 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~-~~~~Gad~vV~GSa  132 (157)
                      ....+-.     .....+.++++++..+++++.+.-....+.... +.+.|+|.+.++..
T Consensus        91 ~~~~~~~-----~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~  145 (200)
T cd04722          91 HGAVGYL-----AREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNG  145 (200)
T ss_pred             eccCCcH-----HHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCC
Confidence            5443211     122344566667665567777666554332222 67899999988764

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=95.94  E-value=0.043  Score=46.40  Aligned_cols=79  Identities=20%  Similarity=0.323  Sum_probs=58.3

Q ss_pred             eEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCC
Q 031554           45 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA  124 (157)
Q Consensus        45 ~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Ga  124 (157)
                      +|-+++.....+....++.. .++|+|++-+.+ |  .   ...-++-|+-+|+.+|+..|...-.++.+.++.|+.+||
T Consensus       242 ~gAaiGTre~dK~rl~ll~~-aGvdvviLDSSq-G--n---S~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGa  314 (503)
T KOG2550|consen  242 CGAAIGTRDDDKERLDLLVQ-AGVDVVILDSSQ-G--N---SIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGA  314 (503)
T ss_pred             eeeccccccchhHHHHHhhh-cCCcEEEEecCC-C--c---chhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccC
Confidence            35566655555444444444 789999886544 3  2   224566778888899999998888889999999999999


Q ss_pred             CEEEEc
Q 031554          125 NCIVAG  130 (157)
Q Consensus       125 d~vV~G  130 (157)
                      |++=+|
T Consensus       315 DgLrVG  320 (503)
T KOG2550|consen  315 DGLRVG  320 (503)
T ss_pred             ceeEec
Confidence            999888

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=95.90  E-value=0.29  Score=43.58  Aligned_cols=116  Identities=19%  Similarity=0.232  Sum_probs=81.7

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe----cCCCCHHhH----HhhHhcCCCCCeEEEEee
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL----KPGTSVEEV----YPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l----~~~t~~~~~----~~~~~~~~~~d~vl~m~v   76 (157)
                      ..|++.+.+.|.|.+-+--...+ +.+...++.+|+.|..+-.+|    +|--.++.+    +.+.+  .++|.|.+   
T Consensus        99 ~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~--~Gad~I~I---  173 (596)
T PRK14042         99 RAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAE--MGCDSIAI---  173 (596)
T ss_pred             HHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHH--cCCCEEEe---
Confidence            34888889999999877643322 123789999999999886663    343344433    33333  47888766   


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                       ....|........+.++.+|+.. +++|.+    +-|....|.-..+++|||+|=
T Consensus       174 -kDtaG~l~P~~v~~lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGad~iD  227 (596)
T PRK14042        174 -KDMAGLLTPTVTVELYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGCNHID  227 (596)
T ss_pred             -CCcccCCCHHHHHHHHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEE
Confidence             46667776777888899998875 466665    567777888888999999873

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=95.85  E-value=0.21  Score=39.67  Aligned_cols=118  Identities=20%  Similarity=0.247  Sum_probs=80.5

Q ss_pred             HHHHHHHHhCC----CCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc
Q 031554            6 LDYVEPLGKAG----ASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG   64 (157)
Q Consensus         6 ~~~i~~~~~~g----ad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~   64 (157)
                      ...++.+.++|    +|.+.+..-..+               +.+.+.++++++.|.++.+.+  .+.++.+.+.++.+.
T Consensus        72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~  151 (268)
T cd07940          72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEA  151 (268)
T ss_pred             HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHH
Confidence            45678888888    999888643211               122578889999998876543  233455554444321


Q ss_pred             --CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC--CcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           65 --ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--LDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        65 --~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~--~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                        -.++|.|.+    +.+.|........+.++.+++..++  +++.+    |-|....|.-...++|++.|
T Consensus       152 ~~~~G~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~i  218 (268)
T cd07940         152 AIEAGATTINI----PDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQV  218 (268)
T ss_pred             HHHcCCCEEEE----CCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence              136787765    5667777777888889999987765  67665    45666678888889999976

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=95.84  E-value=0.39  Score=34.99  Aligned_cols=108  Identities=19%  Similarity=0.215  Sum_probs=69.5

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGG  110 (157)
                      .-+-+.++..|+.+-..=--.||.|.+..-++  ..+|.|.+-+..-+  .   .....+-+..+|+... ++.+.+.|-
T Consensus        30 kvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~--~dv~vIgvSsl~g~--h---~~l~~~lve~lre~G~~~i~v~~GGv  102 (143)
T COG2185          30 KVIARALADAGFEVINLGLFQTPEEAVRAAVE--EDVDVIGVSSLDGG--H---LTLVPGLVEALREAGVEDILVVVGGV  102 (143)
T ss_pred             HHHHHHHHhCCceEEecCCcCCHHHHHHHHHh--cCCCEEEEEeccch--H---HHHHHHHHHHHHHhCCcceEEeecCc
Confidence            33455677789887554233567777666654  68888877544422  1   2223334555566653 455566666


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHHH
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAP-EPAHVISLMRKSVED  152 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~~l~~~~~~  152 (157)
                      |.+++.+.+.+.|+|.+      |... +..+.++.+++.+..
T Consensus       103 ip~~d~~~l~~~G~~~i------f~pgt~~~~~~~~v~~~l~~  139 (143)
T COG2185         103 IPPGDYQELKEMGVDRI------FGPGTPIEEALSDLLTRLGA  139 (143)
T ss_pred             cCchhHHHHHHhCccee------eCCCCCHHHHHHHHHHHHHh
Confidence            77899999999999865      6554 557788888877765

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=95.78  E-value=0.38  Score=40.10  Aligned_cols=116  Identities=16%  Similarity=0.209  Sum_probs=79.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANP   67 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~   67 (157)
                      ..++.+.++|++.|.+..-..+               +.+.+.++++|++|.++.+.+  .+.++.+.+.++.+.  -.+
T Consensus        75 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g  154 (363)
T TIGR02090        75 KDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG  154 (363)
T ss_pred             HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC
Confidence            4588899999999998433211               112578889999999887754  233455555444331  146


Q ss_pred             CCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           68 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        68 ~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      +|.|.+    +.+.|.....+..+.++.+++..+ +++.+    |-|....|.-...++||+.|
T Consensus       155 ~~~i~l----~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~v  213 (363)
T TIGR02090       155 ADRINI----ADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQV  213 (363)
T ss_pred             CCEEEE----eCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEE
Confidence            787766    566677767777778888887653 55544    66777788888889999975

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=95.77  E-value=0.14  Score=40.56  Aligned_cols=122  Identities=16%  Similarity=0.213  Sum_probs=75.2

Q ss_pred             HHHHHHhCCCCEEEEc-ccCCcchHHHHHHHHHHc--CCc-------------------------eEE--EecCCCCHHh
Q 031554            8 YVEPLGKAGASGFTFH-VEISKDNWQELVQRIKSK--GMR-------------------------PGV--ALKPGTSVEE   57 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh-~e~~~~~~~~~i~~ir~~--g~~-------------------------~gl--~l~~~t~~~~   57 (157)
                      .+..+.+.|++.|.++ .++.++. .++++.+|-.  |.+                         ..+  .|....-++.
T Consensus        76 ~i~~~Ld~Ga~gIivP~v~s~e~a-~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n  154 (249)
T TIGR02311        76 LIKQLLDIGAQTLLVPMIETAEQA-EAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDN  154 (249)
T ss_pred             HHHHHhCCCCCEEEecCcCCHHHH-HHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHH
Confidence            6788999999999998 4444444 7777777621  221                         223  3433334566


Q ss_pred             HHhhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           58 VYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        58 ~~~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +.+++.. +.+|.+.+..-    .-|..++...++..+-++++++..  .+....+ -.-+++.++.+.+.|++.++.|+
T Consensus       155 ~~eI~a~-~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi-~~~~~~~~~~~~~~G~~~~~~~~  232 (249)
T TIGR02311       155 LEEIAAV-EGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGI-LTADPKLARQYLKLGALFVAVGV  232 (249)
T ss_pred             HHHHHCC-CCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceee-cCCCHHHHHHHHHcCCCEEEEch
Confidence            7777765 78999988642    234445444454444444444321  1232322 23457899999999999999997


Q ss_pred             c
Q 031554          132 S  132 (157)
Q Consensus       132 a  132 (157)
                      -
T Consensus       233 D  233 (249)
T TIGR02311       233 D  233 (249)
T ss_pred             H
Confidence            4

This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.

>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional

Probab=95.74  E-value=0.36  Score=38.70  Aligned_cols=123  Identities=12%  Similarity=0.210  Sum_probs=75.1

Q ss_pred             HHHHHHHhCCCCEEEEcc-cCCcchHHHHHHHHH---------------------------HcCCce--EEEecCCCCHH
Q 031554            7 DYVEPLGKAGASGFTFHV-EISKDNWQELVQRIK---------------------------SKGMRP--GVALKPGTSVE   56 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~-e~~~~~~~~~i~~ir---------------------------~~g~~~--gl~l~~~t~~~   56 (157)
                      .++..+.++||+.|.++. ++.++. .++++++|                           ..+-..  .+.|...+-++
T Consensus        81 ~~i~r~LD~GA~GIivP~V~saeeA-~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~~  159 (267)
T PRK10128         81 PLIKQVLDIGAQTLLIPMVDTAEQA-RQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTALD  159 (267)
T ss_pred             HHHHHHhCCCCCeeEecCcCCHHHH-HHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHHH
Confidence            467889999999999984 333333 44444432                           111122  22333333456


Q ss_pred             hHHhhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           57 EVYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        57 ~~~~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      .++++... +.+|.+.+..-    .-|..+|...|+..+.++++.+..  .++.+.+ ..-+++.++.+.+.|++.+++|
T Consensus       160 n~~~I~~~-~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~-~~~~~~~a~~~~~~G~~~v~~g  237 (267)
T PRK10128        160 NLDEILDV-EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGF-LAVDPDMAQKCLAWGANFVAVG  237 (267)
T ss_pred             hHHHHhCC-CCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE-cCCCHHHHHHHHHcCCcEEEEC
Confidence            67777766 78999988632    235556666666555555544321  2444432 3456899999999999999999


Q ss_pred             cc
Q 031554          131 SS  132 (157)
Q Consensus       131 Sa  132 (157)
                      +.
T Consensus       238 ~D  239 (267)
T PRK10128        238 VD  239 (267)
T ss_pred             hH
Confidence            84

>PRK02227 hypothetical protein; Provisional

Probab=95.72  E-value=0.59  Score=36.88  Aligned_cols=136  Identities=16%  Similarity=0.150  Sum_probs=79.9

Q ss_pred             HHHHhCCCCEEEEcccCCcchHHHH-------HHHHHHc--CCceEEEecCCC------CHHhHHhhHhcCCCCCeEEEE
Q 031554           10 EPLGKAGASGFTFHVEISKDNWQEL-------VQRIKSK--GMRPGVALKPGT------SVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~~~~~~~~~-------i~~ir~~--g~~~gl~l~~~t------~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      ..+..+|+|+|-+..-..... .+.       .+..+.+  +.++.-++..+.      +...+-++..- .+.|.+++-
T Consensus        74 ~~~a~~GvDyVKvGl~~~~~~-~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~-aGf~g~MlD  151 (238)
T PRK02227         74 LGAAATGADYVKVGLYGGKTA-EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAAD-AGFDGAMLD  151 (238)
T ss_pred             HHHHhhCCCEEEEcCCCCCcH-HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHH-cCCCEEEEe
Confidence            455778999999996544433 233       3334433  444433343331      23333333322 578888886


Q ss_pred             eeeCCCCCcc-cchhHHHH----HHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCH-----HHHHH
Q 031554           75 TVEPGFGGQK-FMPEMMDK----VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEP-----AHVIS  144 (157)
Q Consensus        75 ~v~pG~~gq~-~~~~~~~k----i~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~-----~~~~~  144 (157)
                      |-..  +|.. |.....+.    +++.|+  .+......|.++.++++.+...++|++=+=+++....|-     .+.+.
T Consensus       152 Ta~K--dg~~Lfd~l~~~~L~~Fv~~ar~--~Gl~~gLAGSL~~~dip~L~~l~pD~lGfRgavC~g~dR~~~id~~~V~  227 (238)
T PRK02227        152 TAIK--DGKSLFDHMDEEELAEFVAEARS--HGLMSALAGSLKFEDIPALKRLGPDILGVRGAVCGGGDRTGRIDPELVA  227 (238)
T ss_pred             cccC--CCcchHhhCCHHHHHHHHHHHHH--cccHhHhcccCchhhHHHHHhcCCCEEEechhccCCCCcccccCHHHHH
Confidence            5443  3333 33223333    333343  368899999999999999999999998666888754422     24555


Q ss_pred             HHHHHHH
Q 031554          145 LMRKSVE  151 (157)
Q Consensus       145 ~l~~~~~  151 (157)
                      +|++.+.
T Consensus       228 ~~~~~l~  234 (238)
T PRK02227        228 ELREALR  234 (238)
T ss_pred             HHHHHhh
Confidence            5655543

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]

Probab=95.69  E-value=0.9  Score=37.63  Aligned_cols=142  Identities=22%  Similarity=0.318  Sum_probs=93.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc---------hH---HHHHHHHHHcCCce--EEEecCCCCH----HhHHhhHhcCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD---------NW---QELVQRIKSKGMRP--GVALKPGTSV----EEVYPLVEGANP   67 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~---------~~---~~~i~~ir~~g~~~--gl~l~~~t~~----~~~~~~~~~~~~   67 (157)
                      ....+.+.++|+|...--.|+..+         +.   .++++.+|+.|+++  |.-+.-..+.    +.+..+.++ +.
T Consensus       144 ~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l-~~  222 (335)
T COG0502         144 EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANL-PT  222 (335)
T ss_pred             HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhC-CC
Confidence            456788999999999887766432         11   56899999999987  4445433333    334444444 44


Q ss_pred             CCeEEEEeeeC--CCCCccc-c---hhHHHHHHHHHhhCCCCcEEEEcCCC---HhhHHHHHHcCCCEEEEcc-cccCC-
Q 031554           68 VEMVLVMTVEP--GFGGQKF-M---PEMMDKVRSLRNRYPSLDIEVDGGLG---PSTIAEAASAGANCIVAGS-SVFGA-  136 (157)
Q Consensus        68 ~d~vl~m~v~p--G~~gq~~-~---~~~~~ki~~l~~~~~~~~I~vdGGI~---~~~i~~~~~~Gad~vV~GS-ai~~~-  136 (157)
                      +|-|=++..+|  |+-=+.. .   -+.++-|.-+|=..|+..|-+.||..   ++......-+||+.+.+|- ++... 
T Consensus       223 pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~  302 (335)
T COG0502         223 PDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPG  302 (335)
T ss_pred             CCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecceEeecCC
Confidence            89999998876  5432211 1   13455566666678998888888865   4666778899999999998 66543 


Q ss_pred             CCHHHHHHHHHH
Q 031554          137 PEPAHVISLMRK  148 (157)
Q Consensus       137 ~d~~~~~~~l~~  148 (157)
                      ++..+-.+.+++
T Consensus       303 ~~~e~D~~~l~~  314 (335)
T COG0502         303 PDEDKDLELLKD  314 (335)
T ss_pred             CCchhHHHHHHH
Confidence            344444444443

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=95.68  E-value=0.53  Score=37.05  Aligned_cols=133  Identities=16%  Similarity=0.155  Sum_probs=79.5

Q ss_pred             HHhCCCCEEEEcccCCcch------HHHHHHHHHHc--CCceEEEecCCC-------CHHhHHhhHhcCCCCCeEEEEee
Q 031554           12 LGKAGASGFTFHVEISKDN------WQELVQRIKSK--GMRPGVALKPGT-------SVEEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus        12 ~~~~gad~v~vh~e~~~~~------~~~~i~~ir~~--g~~~gl~l~~~t-------~~~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      .+.+|+|+|-+..-...+.      +..+.+.++..  +.++.-++..+.       |.+...-..+  .+.|.+++-|-
T Consensus        76 ~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~--aG~~gvMlDTa  153 (235)
T PF04476_consen   76 AAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAE--AGFDGVMLDTA  153 (235)
T ss_pred             HHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHH--cCCCEEEEecc
Confidence            4567999999997544432      12233444443  334433444333       3333333332  47889888766


Q ss_pred             eCCCCCcccchhHHHH----HHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCH------HHHHHHH
Q 031554           77 EPGFGGQKFMPEMMDK----VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEP------AHVISLM  146 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~k----i~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~------~~~~~~l  146 (157)
                      ... ++..|.....+.    +++.|+  .+......|.++.++++.+...++|++=+=+++....|-      .+.+.+|
T Consensus       154 ~Kd-g~~L~d~~~~~~L~~Fv~~ar~--~gL~~aLAGSL~~~di~~L~~l~pD~lGfRGAvC~ggdR~~G~id~~~V~~l  230 (235)
T PF04476_consen  154 DKD-GGSLFDHLSEEELAEFVAQARA--HGLMCALAGSLRFEDIPRLKRLGPDILGFRGAVCGGGDRRAGRIDPELVAAL  230 (235)
T ss_pred             cCC-CCchhhcCCHHHHHHHHHHHHH--ccchhhccccCChhHHHHHHhcCCCEEEechhhCCCCCcCccccCHHHHHHH
Confidence            543 233333323333    444444  368899999999999999999999999666888765332      2455556


Q ss_pred             HHH
Q 031554          147 RKS  149 (157)
Q Consensus       147 ~~~  149 (157)
                      ++.
T Consensus       231 r~~  233 (235)
T PF04476_consen  231 RAL  233 (235)
T ss_pred             HHh
Confidence            554

>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria

Probab=95.57  E-value=0.37  Score=37.81  Aligned_cols=124  Identities=16%  Similarity=0.310  Sum_probs=69.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEc----ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH-Hh-hHhcCCCCCeEEEEeee
Q 031554            4 NPLDYVEPLGKAGASGFTFH----VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV-YP-LVEGANPVEMVLVMTVE   77 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh----~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~-~~-~~~~~~~~d~vl~m~v~   77 (157)
                      .|..+++.+..+|.|.+++-    .+...+-+.++++.++++|+...-   .....+.. ++ +++. .++ -|-+.+..
T Consensus        63 ~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~G---ag~~~~~a~~p~i~~~-~g~-kia~l~~t  137 (250)
T PF09587_consen   63 APPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVG---AGRNLEEARRPAIIEV-NGV-KIAFLGYT  137 (250)
T ss_pred             CCHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeE---CcCChHHhcCeEEEEE-CCE-EEEEEEEE
Confidence            35567999999999999994    222223447899999999976422   12222222 21 2211 222 22333322


Q ss_pred             C---CCCCccc---------------------chhHHHHHHHHHhhCCCCcEEEEcCCC---------HhhHHHHHHcCC
Q 031554           78 P---GFGGQKF---------------------MPEMMDKVRSLRNRYPSLDIEVDGGLG---------PSTIAEAASAGA  124 (157)
Q Consensus        78 p---G~~gq~~---------------------~~~~~~ki~~l~~~~~~~~I~vdGGI~---------~~~i~~~~~~Ga  124 (157)
                      -   +.....-                     .+...+.|+++|+...=+-+.+=.|..         .+-+..++++||
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGa  217 (250)
T PF09587_consen  138 DGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGA  217 (250)
T ss_pred             cCCCCCccccccccccccccccccccccccchHHHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCC
Confidence            1   1111100                     144666788888533223455666644         345567899999


Q ss_pred             CEEEEccc
Q 031554          125 NCIVAGSS  132 (157)
Q Consensus       125 d~vV~GSa  132 (157)
                      |+|+.+..
T Consensus       218 DiIiG~Hp  225 (250)
T PF09587_consen  218 DIIIGHHP  225 (250)
T ss_pred             CEEEeCCC
Confidence            99987754

Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].

>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

Probab=95.56  E-value=0.23  Score=44.49  Aligned_cols=127  Identities=20%  Similarity=0.224  Sum_probs=75.3

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC--------CHHhHHhhHhc-CCCCCe-
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT--------SVEEVYPLVEG-ANPVEM-   70 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t--------~~~~~~~~~~~-~~~~d~-   70 (157)
                      .+++.++|+++|.+.        .|. +..+.+-++.+.++|+.+.+-+. +|        ..+.+.+.++. +..++. 
T Consensus       474 a~mLkd~G~~~viiGHSERR~~f~Et-d~~V~~K~~~al~~GL~pIvCVG-Etl~ere~g~t~~vv~~Ql~~~l~~v~~~  551 (645)
T PRK13962        474 GPMLAEIGVEYVIIGHSERRQYFGET-DELVNKKVLAALKAGLTPILCVG-ETLDERESGITFDVVRLQLKAALNGLSAE  551 (645)
T ss_pred             HHHHHHcCCCEEEECcccccCCcCcc-hHHHHHHHHHHHHCCCEEEEEcC-CCHHHHhcCCHHHHHHHHHHHHHccCCHh
Confidence            468899999999987        232 22224555889999999887775 22        12223333221 133321 


Q ss_pred             ---EEEEeeeC----CCCCcccchh----HHHHHHHHHh-hC-----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEEccc
Q 031554           71 ---VLVMTVEP----GFGGQKFMPE----MMDKVRSLRN-RY-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSS  132 (157)
Q Consensus        71 ---vl~m~v~p----G~~gq~~~~~----~~~ki~~l~~-~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~GSa  132 (157)
                         =++..=+|    |+ |+.-.++    +...||+.-. .+     .+++|.-.|.++++|+.++. ...+|++-+|++
T Consensus       552 ~~~~ivIAYEPVWAIGT-G~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgA  630 (645)
T PRK13962        552 QVKKVVIAYEPVWAIGT-GKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGA  630 (645)
T ss_pred             HcCcEEEEECcHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecCCCCHhHHHHHhcCCCCCeEEeehH
Confidence               01223356    44 4433333    3333443321 21     24789999999999999864 556999999998


Q ss_pred             ccCCCC
Q 031554          133 VFGAPE  138 (157)
Q Consensus       133 i~~~~d  138 (157)
                      -...++
T Consensus       631 SL~~~~  636 (645)
T PRK13962        631 SLKAQE  636 (645)
T ss_pred             hcCHHH
Confidence            664433

>PRK12999 pyruvate carboxylase; Reviewed

Probab=95.56  E-value=0.35  Score=46.17  Aligned_cols=118  Identities=17%  Similarity=0.231  Sum_probs=82.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCC----------CCHH----hHHhhHhcCCCCCe
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPG----------TSVE----EVYPLVEGANPVEM   70 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~----------t~~~----~~~~~~~~~~~~d~   70 (157)
                      ..|++.+.++|.|++.+-....+ ..+...++.+|+.|...-++++..          .+++    .++++.+  .++|.
T Consensus       630 ~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~--~Ga~~  707 (1146)
T PRK12999        630 RAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEK--AGAHI  707 (1146)
T ss_pred             HHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHH--cCCCE
Confidence            45788999999999888633222 123778889999997655555433          1333    3334443  47887


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      |.+    ....|......+.+.++.+|+.. +++|.+    |-|....|.-..+++|||.+=+-
T Consensus       708 i~i----kDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~a  766 (1146)
T PRK12999        708 LAI----KDMAGLLKPAAAYELVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVA  766 (1146)
T ss_pred             EEE----CCccCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEec
Confidence            766    56678777777888899999875 566664    67888888888899999987443

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.56  E-value=0.12  Score=39.98  Aligned_cols=88  Identities=22%  Similarity=0.326  Sum_probs=62.6

Q ss_pred             HHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554           32 QELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG  110 (157)
                      .++++.+.++++-+.+-. ++++-++..+.+.+  .+++.|-+-     +.    .+..++-|+++++.+|++.|.++.=
T Consensus         6 ~~~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~--~Gi~~iEit-----l~----~~~~~~~I~~l~~~~p~~~IGAGTV   74 (212)
T PRK05718          6 TSIEEILRAGPVVPVIVINKLEDAVPLAKALVA--GGLPVLEVT-----LR----TPAALEAIRLIAKEVPEALIGAGTV   74 (212)
T ss_pred             HHHHHHHHHCCEEEEEEcCCHHHHHHHHHHHHH--cCCCEEEEe-----cC----CccHHHHHHHHHHHCCCCEEEEeec
Confidence            456678887777655543 33333444555553  368887652     22    2357778889998889999999988


Q ss_pred             CCHhhHHHHHHcCCCEEEEc
Q 031554          111 LGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~G  130 (157)
                      ++.++++...++||+.+|+=
T Consensus        75 l~~~~a~~a~~aGA~FivsP   94 (212)
T PRK05718         75 LNPEQLAQAIEAGAQFIVSP   94 (212)
T ss_pred             cCHHHHHHHHHcCCCEEECC
Confidence            99999999999999988753

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family

Probab=95.54  E-value=0.052  Score=40.89  Aligned_cols=87  Identities=23%  Similarity=0.394  Sum_probs=52.0

Q ss_pred             HHHHHHHHHcCCceEE--EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSKGMRPGV--ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl--~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                      ...++.+|+.|+....  ++-=...++...+.++. .++|.|-+|   ||     ..|.   -++++++.. +++|.+.|
T Consensus        81 ~~~i~~Ak~~gl~tIqRiFliDS~al~~~~~~i~~-~~PD~vEil---Pg-----~~p~---vi~~i~~~~-~~PiIAGG  147 (175)
T PF04309_consen   81 SNLIKRAKKLGLLTIQRIFLIDSSALETGIKQIEQ-SKPDAVEIL---PG-----VMPK---VIKKIREET-NIPIIAGG  147 (175)
T ss_dssp             HHHHHHHHHTT-EEEEEEE-SSHHHHHHHHHHHHH-HT-SEEEEE---SC-----CHHH---HHCCCCCCC-SS-EEEES
T ss_pred             HHHHHHHHHcCCEEEEEeeeecHHHHHHHHHHHhh-cCCCEEEEc---hH-----HHHH---HHHHHHHhc-CCCEEeec
Confidence            4677777787777644  33212244444444444 689999998   87     1232   344445543 68887777


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEcc
Q 031554          110 GLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      =|+ .+++.+..++||+.+..++
T Consensus       148 LI~~~e~v~~al~aGa~aVSTS~  170 (175)
T PF04309_consen  148 LIRTKEDVEEALKAGADAVSTSN  170 (175)
T ss_dssp             S--SHHHHHHHCCTTCEEEEE--
T ss_pred             ccCCHHHHHHHHHcCCEEEEcCC
Confidence            676 7999999999999987664

Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.

>PRK10076 pyruvate formate lyase II activase; Provisional

Probab=95.51  E-value=0.47  Score=36.71  Aligned_cols=68  Identities=16%  Similarity=0.192  Sum_probs=51.9

Q ss_pred             ChHHHHHHHHhC------CCCEEEEc-ccCCcch--HHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554            4 NPLDYVEPLGKA------GASGFTFH-VEISKDN--WQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~~~~~~------gad~v~vh-~e~~~~~--~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      .|+..++.+.+.      +..+|||- .|..-.+  +.++++.+|+.|+.+.+.-|-..+.+.+++++   +.+|.+++-
T Consensus        20 t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~---~~~D~~l~D   96 (213)
T PRK10076         20 TLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLA---KLCDEVLFD   96 (213)
T ss_pred             CHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHH---HhcCEEEEe
Confidence            466666666554      56788887 4444332  36889999999999999999888999999998   789998874

>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2

Probab=95.44  E-value=0.25  Score=41.06  Aligned_cols=141  Identities=14%  Similarity=0.226  Sum_probs=87.8

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEE----eeeCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVM----TVEPGF   80 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m----~v~pG~   80 (157)
                      +.++...+.|+|+|.+..--..+.+.++-+.++++|..+.+.  |.....++.+.+++   ...|.|++=    +++-++
T Consensus       180 ~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~---~~sDgimiaRGDLg~e~~~  256 (348)
T PF00224_consen  180 EDIKFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEIL---EASDGIMIARGDLGVEIPF  256 (348)
T ss_dssp             HHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHH---HHSSEEEEEHHHHHHHSTG
T ss_pred             HHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHh---hhcCeEEEecCCcceeeeH
Confidence            456677899999999986544444366666677777666665  54444567788888   678999874    233221


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCC----------CHhhHHH---HHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL----------GPSTIAE---AASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI----------~~~~i~~---~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      .   ..+..-++|-+.++. .+.++.+..-+          |...+..   .+.-|||++.+..-=..-..|.++++.+.
T Consensus       257 e---~v~~~Qk~ii~~~~~-~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v~~~~  332 (348)
T PF00224_consen  257 E---KVPIIQKRIIKKCNA-AGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKYPVEAVKTMA  332 (348)
T ss_dssp             G---GHHHHHHHHHHHHHH-HT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHH-hCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHHHHHH
Confidence            1   123333443333333 36788888877          4333443   35569999999854433478999999999


Q ss_pred             HHHHHHh
Q 031554          148 KSVEDAQ  154 (157)
Q Consensus       148 ~~~~~~~  154 (157)
                      ++++.+-
T Consensus       333 ~i~~~~E  339 (348)
T PF00224_consen  333 RIIREAE  339 (348)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....

>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase

Probab=95.35  E-value=0.66  Score=35.86  Aligned_cols=117  Identities=11%  Similarity=0.152  Sum_probs=71.6

Q ss_pred             CCEEEEcccCCcchH-HHHH-HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHH
Q 031554           17 ASGFTFHVEISKDNW-QELV-QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR   94 (157)
Q Consensus        17 ad~v~vh~e~~~~~~-~~~i-~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~   94 (157)
                      ..++..-.+...+.+ ...+ -.++.+|.++ +.+.+++|.+.+.+...- .++|+|.+-.+.+.     -.+...+-++
T Consensus        89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~V-i~LG~~vp~e~~v~~~~~-~~~~~V~lS~~~~~-----~~~~~~~~i~  161 (213)
T cd02069          89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEV-IDLGVMVPIEKILEAAKE-HKADIIGLSGLLVP-----SLDEMVEVAE  161 (213)
T ss_pred             CeEEEEeCCCchhHHHHHHHHHHHHhCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEccchhc-----cHHHHHHHHH
Confidence            344444344333433 3333 3466678764 467788898877666654 58898877444331     1334555577


Q ss_pred             HHHhhCCCCcEEEEcCCCHhhH-HH---HHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           95 SLRNRYPSLDIEVDGGLGPSTI-AE---AASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        95 ~l~~~~~~~~I~vdGGI~~~~i-~~---~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      ++++..++++|.+.|..-.+.. ..   ....|||..        .+|..++++..++
T Consensus       162 ~L~~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y--------~~da~~~v~~~~~  211 (213)
T cd02069         162 EMNRRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVY--------VKDASRALGVANK  211 (213)
T ss_pred             HHHhcCCCCeEEEEChhcCHHHHhhhhccccCCCceE--------ecCHHHHHHHHHH
Confidence            7887777899999996544333 33   245799977        5677777666554

This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily

Probab=95.33  E-value=0.53  Score=38.72  Aligned_cols=116  Identities=15%  Similarity=0.196  Sum_probs=74.3

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCC-------cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCe
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEIS-------KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~-------~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~   70 (157)
                      .|+.+++   .+.+.|.+.+-+|.-..       ... .+.++.+|+.   ++.+.+..|-..+.+...++++.+...+.
T Consensus       139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d-~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i  217 (357)
T cd03316         139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLRED-LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL  217 (357)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHH-HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC
Confidence            3555544   44578999999987542       223 6778888885   45667777777777777666642122221


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                      .        +-.|++.+..++..+++++. .+++|.+|..+. .+.+.++++.| +|++.+
T Consensus       218 ~--------~iEqP~~~~~~~~~~~l~~~-~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~  269 (357)
T cd03316         218 F--------WFEEPVPPDDLEGLARLRQA-TSVPIAAGENLYTRWEFRDLLEAGAVDIIQP  269 (357)
T ss_pred             C--------eEcCCCCccCHHHHHHHHHh-CCCCEEeccccccHHHHHHHHHhCCCCEEec
Confidence            1        11344555556666777776 368899999985 78888887644 676644

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=95.32  E-value=0.92  Score=34.56  Aligned_cols=141  Identities=13%  Similarity=0.111  Sum_probs=80.0

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhcCCCCCeEEEEe
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      +++.++++.+.+.|++.++++....    ...-+.++..+.++..+++...       ....+++.++  .++|-|-++ 
T Consensus        17 ~~i~~~~~~a~~~~~~av~v~p~~v----~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~--~GAdevdvv-   89 (203)
T cd00959          17 EDIRKLCDEAKEYGFAAVCVNPCFV----PLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIA--DGADEIDMV-   89 (203)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcHHHH----HHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHH--cCCCEEEEe-
Confidence            3567788999999999999984321    2233334444556655553111       1223444444  366666553 


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCc---EEEEcCCCHhhHH----HHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLD---IEVDGGLGPSTIA----EAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~---I~vdGGI~~~~i~----~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      ++.|.--........+.+.++++...+.+   |.-.|..+.+++.    ...++|||.+=.++......---+.++.|++
T Consensus        90 ~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~  169 (203)
T cd00959          90 INIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKE  169 (203)
T ss_pred             ecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHH
Confidence            34442111123456777777777654544   4556777766654    4589999999888766532222233444444


Q ss_pred             HH
Q 031554          149 SV  150 (157)
Q Consensus       149 ~~  150 (157)
                      .+
T Consensus       170 ~~  171 (203)
T cd00959         170 AV  171 (203)
T ss_pred             Hh
Confidence            43

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=95.32  E-value=0.16  Score=43.96  Aligned_cols=99  Identities=18%  Similarity=0.311  Sum_probs=68.5

Q ss_pred             HHHHHHHHHcC--CceEEEecCCCCHHhHHh-hHhcCCCCCeEEEEeeeCCCCCcccch---------hHHH-HHHHHHh
Q 031554           32 QELVQRIKSKG--MRPGVALKPGTSVEEVYP-LVEGANPVEMVLVMTVEPGFGGQKFMP---------EMMD-KVRSLRN   98 (157)
Q Consensus        32 ~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~-~~~~~~~~d~vl~m~v~pG~~gq~~~~---------~~~~-ki~~l~~   98 (157)
                      ...|..+|+.+  .++++=+.....++.+.. ..+  ..+|+|++-+-+-|++..++..         ..+. --+.|+.
T Consensus       291 aqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvak--A~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~  368 (485)
T COG0069         291 AQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAK--AGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVL  368 (485)
T ss_pred             HHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhh--ccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHH
Confidence            77888888874  667777888888887655 333  6899999876665555333211         1111 1222233


Q ss_pred             h--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554           99 R--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        99 ~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa  132 (157)
                      .  ...+.|.+|||++ ...+...+..|||.|-.|++
T Consensus       369 ~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa  405 (485)
T COG0069         369 NGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTA  405 (485)
T ss_pred             cCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchH
Confidence            2  3568999999998 68899999999999999975

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.27  E-value=0.55  Score=40.71  Aligned_cols=67  Identities=22%  Similarity=0.380  Sum_probs=48.4

Q ss_pred             HhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           56 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        56 ~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      +.++.+.+  .++|.|.+-+.+ |.     ....++-|+++|+.+|+.+|.+.-=.|.+.+..+.++|||++-+|
T Consensus       230 ~~a~~Lv~--aGvd~i~~D~a~-~~-----~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vg  296 (479)
T PRK07807        230 AKARALLE--AGVDVLVVDTAH-GH-----QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVG  296 (479)
T ss_pred             HHHHHHHH--hCCCEEEEeccC-Cc-----cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEEC
Confidence            44555554  578988775444 21     346778899999998888774444445899999999999999844

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=95.26  E-value=0.98  Score=35.19  Aligned_cols=115  Identities=17%  Similarity=0.203  Sum_probs=69.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCC----c--chHHHHHHHHHHc--CCceEEEe-cCCCCHHhHHhhHhc--CCCCCeEEEEe
Q 031554            7 DYVEPLGKAGASGFTFHVEIS----K--DNWQELVQRIKSK--GMRPGVAL-KPGTSVEEVYPLVEG--ANPVEMVLVMT   75 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~----~--~~~~~~i~~ir~~--g~~~gl~l-~~~t~~~~~~~~~~~--~~~~d~vl~m~   75 (157)
                      .-.+.+.+.|||-+-+-....    .  +.+.+.++.+++.  +..+-+-+ .+.-+.+.+....++  ..++|+|-   
T Consensus        78 ~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIK---  154 (221)
T PRK00507         78 FEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVK---  154 (221)
T ss_pred             HHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEE---
Confidence            345677888999887763321    1  1224556666653  43333333 233333444333331  26899664   


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      ...||+.   ....++-++.+++.. .++.|-+.|||+ .+++.++.++||+.+
T Consensus       155 TsTG~~~---~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~ri  205 (221)
T PRK00507        155 TSTGFST---GGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRL  205 (221)
T ss_pred             cCCCCCC---CCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceE
Confidence            4566642   123455666666653 468999999999 799999999999988

>PTZ00300 pyruvate kinase; Provisional

Probab=95.24  E-value=1.4  Score=37.98  Aligned_cols=140  Identities=14%  Similarity=0.148  Sum_probs=86.0

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK   84 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~   84 (157)
                      ..+..+.+.|+|+|.+..--..+.+.++.+.+.+.|..+.+.  |....-++.+.+++   ..+|.|++-   ||--|..
T Consensus       151 ~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~---~~~DgImVa---RGDLgve  224 (454)
T PTZ00300        151 ADLQFGVEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSII---EESDGIMVA---RGDLGVE  224 (454)
T ss_pred             HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHH---HhCCEEEEe---cchhhhh
Confidence            456778899999999996544444477777787777666665  44444567888888   889999875   4422222


Q ss_pred             c----chhHHHHHHHHHhhCCCCcEEEEcCC----------CHhh---HHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           85 F----MPEMMDKVRSLRNRYPSLDIEVDGGL----------GPST---IAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        85 ~----~~~~~~ki~~l~~~~~~~~I~vdGGI----------~~~~---i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      .    .+...+++-+..+. .+.++.+.-=+          |...   +...+--|+|++.+..-=-.-..|.++++.|.
T Consensus       225 i~~e~vp~~Qk~Ii~~~~~-~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~  303 (454)
T PTZ00300        225 IPAEKVVVAQKILISKCNV-AGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMA  303 (454)
T ss_pred             cChHHHHHHHHHHHHHHHH-cCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHH
Confidence            2    22334443333322 24444443221          2222   33344459999988643222368899999999


Q ss_pred             HHHHHH
Q 031554          148 KSVEDA  153 (157)
Q Consensus       148 ~~~~~~  153 (157)
                      ++.+.+
T Consensus       304 ~I~~~a  309 (454)
T PTZ00300        304 RICLEA  309 (454)
T ss_pred             HHHHHH
Confidence            987753

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=95.18  E-value=0.36  Score=40.18  Aligned_cols=119  Identities=15%  Similarity=0.109  Sum_probs=72.6

Q ss_pred             HHHHHHhCCCCEEEEc----ccCCcchHHHHHHHHHHcC-Cce-EEEecCCCC----HHhHHhhHhcCCCCCeEEEEeee
Q 031554            8 YVEPLGKAGASGFTFH----VEISKDNWQELVQRIKSKG-MRP-GVALKPGTS----VEEVYPLVEGANPVEMVLVMTVE   77 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh----~e~~~~~~~~~i~~ir~~g-~~~-gl~l~~~t~----~~~~~~~~~~~~~~d~vl~m~v~   77 (157)
                      +...+.++|...-+=-    .+.++ . .+.++.+|+.. -.+ ..-|+..++    .+.+.+.++. -..|.+.+. ++
T Consensus        82 La~~a~~~G~~~~~Gs~~~~~~~~~-~-~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~-~~adal~l~-l~  157 (352)
T PRK05437         82 LAEAAEELGIAMGVGSQRAALKDPE-L-ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEM-IEADALQIH-LN  157 (352)
T ss_pred             HHHHHHHcCCCeEecccHhhccChh-h-HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHh-cCCCcEEEe-Cc
Confidence            4555666674322211    22222 3 67778888864 333 444555444    5666666655 377888764 33


Q ss_pred             CCCC-----CcccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           78 PGFG-----GQKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        78 pG~~-----gq~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      |+..     +.......++.|+++++.. +++|.+   .+|.+.+.+..+.++|+|.++++.
T Consensus       158 ~~qe~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg  218 (352)
T PRK05437        158 PLQELVQPEGDRDFRGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG  218 (352)
T ss_pred             cchhhcCCCCcccHHHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence            3211     1111123557788888764 577765   678999999999999999999854

>PLN02334 ribulose-phosphate 3-epimerase

Probab=95.14  E-value=1.1  Score=34.62  Aligned_cols=118  Identities=9%  Similarity=0.040  Sum_probs=72.7

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC---cchHH--HHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS---KDNWQ--ELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~---~~~~~--~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      .+.++.+.+.|++++++=....   ++...  +.++.+|+.. ..+++-+-..+|...+..+.+  .++|+|.++   .|
T Consensus        23 ~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~--~gad~v~vH---~~   97 (229)
T PLN02334         23 AEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAK--AGASIFTFH---IE   97 (229)
T ss_pred             HHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHH--cCCCEEEEe---ec
Confidence            4567888889999999853221   12111  6888998874 334776666666666666654  479999765   33


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-C-HhhHHHHHHcC-CCEEEEcccc
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-G-PSTIAEAASAG-ANCIVAGSSV  133 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~-~~~i~~~~~~G-ad~vV~GSai  133 (157)
                         |.........++++++.  +..+.+.-.- | .+.+..+.+.| +|.+.+|+--
T Consensus        98 ---q~~~d~~~~~~~~i~~~--g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~  149 (229)
T PLN02334         98 ---QASTIHLHRLIQQIKSA--GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVE  149 (229)
T ss_pred             ---cccchhHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEe
Confidence               21112344556666654  4555555542 2 45666666664 9999998643

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=95.09  E-value=0.58  Score=37.92  Aligned_cols=119  Identities=20%  Similarity=0.173  Sum_probs=74.6

Q ss_pred             ChHHH---HHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C-CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEe
Q 031554            4 NPLDY---VEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G-MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMT   75 (157)
Q Consensus         4 ~p~~~---i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g-~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~   75 (157)
                      +|+.+   ++.+.+.|.+.+=++.... +.. .+.++.+|+. | .++.+..|-..+.+...++.+...  .++++    
T Consensus       134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d-~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~i----  208 (316)
T cd03319         134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDD-IERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELI----  208 (316)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeCCChhhH-HHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEE----
Confidence            45544   4555678999999886432 233 5778888874 5 445555666566666555543102  23333    


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH-cCCCEEEEccccc
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS-AGANCIVAGSSVF  134 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~-~Gad~vV~GSai~  134 (157)
                            .|++.+..++-++++++. .+++|..|+.+. .+.++.+.+ .++|++..-..-+
T Consensus       209 ------EeP~~~~d~~~~~~L~~~-~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~  262 (316)
T cd03319         209 ------EQPVPAGDDDGLAYLRDK-SPLPIMADESCFSAADAARLAGGGAYDGINIKLMKT  262 (316)
T ss_pred             ------ECCCCCCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecccc
Confidence                  344555556666777765 468999999986 678877766 6688887764443

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=95.08  E-value=1.6  Score=35.98  Aligned_cols=127  Identities=18%  Similarity=0.123  Sum_probs=83.2

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc-----hHHHHHHHHHHcCCceEEEec------------C--CCCHHhHHhhHhcCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD-----NWQELVQRIKSKGMRPGVALK------------P--GTSVEEVYPLVEGAN   66 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~-----~~~~~i~~ir~~g~~~gl~l~------------~--~t~~~~~~~~~~~~~   66 (157)
                      ...+..+.++|.+.|.+=.-..+.     ...++.+.++.+|+.+=-.|.            .  -|..+.+.++.+- -
T Consensus        98 ~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~-T  176 (321)
T PRK07084         98 FELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKK-T  176 (321)
T ss_pred             HHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHH-h
Confidence            457788899998888775433221     115677778887765522221            1  4567788888865 4


Q ss_pred             CCCeEEEE--eeeCCCCCcc----cchhHHHHHHHHHhhCCCCcEEEEcC-----------------------CCHhhHH
Q 031554           67 PVEMVLVM--TVEPGFGGQK----FMPEMMDKVRSLRNRYPSLDIEVDGG-----------------------LGPSTIA  117 (157)
Q Consensus        67 ~~d~vl~m--~v~pG~~gq~----~~~~~~~ki~~l~~~~~~~~I~vdGG-----------------------I~~~~i~  117 (157)
                      ++|.+.+-  ++| |..-+.    -..-.++++++|++..++++++.=||                       +..++++
T Consensus       177 gvD~LAvaiGt~H-G~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~  255 (321)
T PRK07084        177 GVDSLAISIGTSH-GAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLR  255 (321)
T ss_pred             CCCEEeecccccc-ccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHH
Confidence            78876542  333 221110    11235778888888766788877764                       4679999


Q ss_pred             HHHHcCCCEEEEccccc
Q 031554          118 EAASAGANCIVAGSSVF  134 (157)
Q Consensus       118 ~~~~~Gad~vV~GSai~  134 (157)
                      +.++.|+.-|=++|.+.
T Consensus       256 kai~~GI~KINi~Tdl~  272 (321)
T PRK07084        256 KAAKSAVCKINIDSDGR  272 (321)
T ss_pred             HHHHcCCceeccchHHH
Confidence            99999999999998764

>PRK00915 2-isopropylmalate synthase; Validated

Probab=95.05  E-value=0.76  Score=40.16  Aligned_cols=117  Identities=22%  Similarity=0.209  Sum_probs=80.7

Q ss_pred             HhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEE
Q 031554           13 GKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLV   73 (157)
Q Consensus        13 ~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~   73 (157)
                      .++|++.|++..-..+-               .+.+.++++|++|.++-+..  ...++.+.+.++.+.  -.++|.|.+
T Consensus        89 ~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l  168 (513)
T PRK00915         89 KPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINI  168 (513)
T ss_pred             hcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            37888888887644332               12578889999999876655  233556555444431  136787765


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCC---CcEEE----EcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPS---LDIEV----DGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~---~~I~v----dGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                          |.+.|.....+..+.++.+++..++   ++|.+    |-|.-..|.-..+++||+.|  -+.+++
T Consensus       169 ----~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~V--d~Tv~G  231 (513)
T PRK00915        169 ----PDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQV--ECTING  231 (513)
T ss_pred             ----ccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEE--EEEeec
Confidence                6777777777788889999887654   67776    77888888888889999965  344443

>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase

Probab=95.03  E-value=0.56  Score=41.52  Aligned_cols=120  Identities=12%  Similarity=0.123  Sum_probs=83.6

Q ss_pred             HHhCCCCEEEEcccCCcchHHHHHHHHHH-------------cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee-
Q 031554           12 LGKAGASGFTFHVEISKDNWQELVQRIKS-------------KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE-   77 (157)
Q Consensus        12 ~~~~gad~v~vh~e~~~~~~~~~i~~ir~-------------~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~-   77 (157)
                      +.+.|+..|.|+.-...+-+.++.+.++.             ....+|+.+....-+..+.+++   ..+|++.+.+-+ 
T Consensus       379 a~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia---~~vDf~sIGtnDL  455 (565)
T TIGR01417       379 ASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLA---KEVDFFSIGTNDL  455 (565)
T ss_pred             HHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHH---hhCCEEEEChhHH
Confidence            46679999999965443322444444442             2356788886555667788888   789999886422 


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHhhC--CCCcEEEEc--CCCHhhHHHHHHcCCCEEEEccccc
Q 031554           78 -------------PGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDG--GLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        78 -------------pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdG--GI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                                   -|..+|.+.|..++-|+++.+..  .++++.+=|  .-+++.++.+...|.+.+.+++.-+
T Consensus       456 sqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~~i  529 (565)
T TIGR01417       456 TQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSASSI  529 (565)
T ss_pred             HHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEChHhH
Confidence                         35557888888888777775532  467777644  3468999999999999999997533

This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.

>PRK06464 phosphoenolpyruvate synthase; Validated

Probab=95.02  E-value=0.42  Score=43.94  Aligned_cols=118  Identities=7%  Similarity=0.062  Sum_probs=78.3

Q ss_pred             HHHh-CCCCE--EEEcc-cCCcchHHHHHHHHHHcC-------CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-
Q 031554           11 PLGK-AGASG--FTFHV-EISKDNWQELVQRIKSKG-------MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP-   78 (157)
Q Consensus        11 ~~~~-~gad~--v~vh~-e~~~~~~~~~i~~ir~~g-------~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-   78 (157)
                      .+.+ .|++.  |.|+. ++.++. .+..+.++..|       ..+|+.+....-+..+.+++   ..+|++.+.+-+- 
T Consensus       628 rald~~G~~~~~ImvPmV~s~eEa-~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa---~~vDfi~IGtnDLt  703 (795)
T PRK06464        628 RVREEMGLTNVEVMIPFVRTVEEA-EKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFL---EYFDGFSIGSNDLT  703 (795)
T ss_pred             HHHHhcCCCCeEEEecCCCCHHHH-HHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHH---HhCCEEEECchHHH
Confidence            3455 68776  55554 444444 66777776554       34677775445556788888   6699998864321 


Q ss_pred             ----C---------CCCcccchhHHHHHHHHHhh--CCCCcEEEEc---CCCHhhHHHHHHcCCCEEEEccc
Q 031554           79 ----G---------FGGQKFMPEMMDKVRSLRNR--YPSLDIEVDG---GLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        79 ----G---------~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdG---GI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                          |         ..++...|..++-|+++.+.  ..++++.+-|   |-+++.++.+.+.|++.+.+++.
T Consensus       704 q~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~~p~~~~~l~~~G~~~ls~~~d  775 (795)
T PRK06464        704 QLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSDHPDFAEWLVEEGIDSISLNPD  775 (795)
T ss_pred             HHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHCCCCEEEEcch
Confidence                1         13455667777777766543  2467787755   33489999999999999999974

>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.91  E-value=0.43  Score=33.25  Aligned_cols=88  Identities=16%  Similarity=0.223  Sum_probs=65.2

Q ss_pred             EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHH-hhCCCCcEEEEcCCCHhhHHHHHHcCC
Q 031554           46 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR-NRYPSLDIEVDGGLGPSTIAEAASAGA  124 (157)
Q Consensus        46 gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~-~~~~~~~I~vdGGI~~~~i~~~~~~Ga  124 (157)
                      ||.|.++++++.+...+   ...+.|.+-  -|.|.--    -.+..-+.|| +....-+|-+-|-+-.+.+.-+..+|.
T Consensus         1 gv~l~~d~~~~~l~~~L---~~l~lI~i~--FP~F~DG----RgfS~ArlLR~r~gy~GelRA~Gdvl~DQl~~l~R~GF   71 (110)
T PF06073_consen    1 GVWLAPDDDPEELADDL---DRLPLIAID--FPKFTDG----RGFSQARLLRERYGYTGELRAVGDVLRDQLFYLRRCGF   71 (110)
T ss_pred             CeecCCCCCHHHHHhhc---cCCCEEEEE--CCCcCCc----hHhHHHHHHHHHcCCCCcEEEeccchHHHHHHHHHcCC
Confidence            67889999999999888   788888653  5776522    2455667778 455677899999999999999999999


Q ss_pred             CEEEEcccccCCCCHHHHHHHH
Q 031554          125 NCIVAGSSVFGAPEPAHVISLM  146 (157)
Q Consensus       125 d~vV~GSai~~~~d~~~~~~~l  146 (157)
                      |.+.+-.    ..++....+.+
T Consensus        72 dsf~l~~----~~~~~~~~~~l   89 (110)
T PF06073_consen   72 DSFELRE----DQDPEDALAAL   89 (110)
T ss_pred             CEEEeCC----CCCHHHHHHHH
Confidence            9986543    23444444444

>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type

Probab=94.89  E-value=1.6  Score=35.12  Aligned_cols=139  Identities=16%  Similarity=0.232  Sum_probs=83.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc----chHHHHHHHHHH-cCCceEEEec-CCCCHHhHHhhHh-c-CCCCCeEEEEeee
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK----DNWQELVQRIKS-KGMRPGVALK-PGTSVEEVYPLVE-G-ANPVEMVLVMTVE   77 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~----~~~~~~i~~ir~-~g~~~gl~l~-~~t~~~~~~~~~~-~-~~~~d~vl~m~v~   77 (157)
                      ...++.+.+.++|+|+|-..+..    .+ .++.+.+++ .|+.+..=+. -+..-..++.++. + ..+++-|++++-+
T Consensus        19 ~~~~~~l~~~~p~fvsvT~~~~~~~~~~t-~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD   97 (281)
T TIGR00677        19 YERMDRMVASGPLFIDITWGAGGTTAELT-LTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGD   97 (281)
T ss_pred             HHHHHHHhhCCCCEEEeccCCCCcchhhH-HHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence            45667788899999999876532    24 567777874 4888766442 2233344554442 1 2579999999877


Q ss_pred             CCCCCc-------ccchhHHHHHHHHHhhCC-CCcEEEEcCC-------CHh-hHHHH---HHcCCCEEEEcccccCCCC
Q 031554           78 PGFGGQ-------KFMPEMMDKVRSLRNRYP-SLDIEVDGGL-------GPS-TIAEA---ASAGANCIVAGSSVFGAPE  138 (157)
Q Consensus        78 pG~~gq-------~~~~~~~~ki~~l~~~~~-~~~I~vdGGI-------~~~-~i~~~---~~~Gad~vV~GSai~~~~d  138 (157)
                      |-..+.       .|. ...+-|+.+++... ++.|.|.|--       +.+ .+..+   +++||| +++-=.+|..+.
T Consensus        98 ~p~~~~~~~~~~~~f~-~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~-f~iTQ~~Fd~~~  175 (281)
T TIGR00677        98 PPHIGDDWTEVEGGFQ-YAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAGAD-FIITQLFYDVDN  175 (281)
T ss_pred             CCCCCCCCCCCCCCCc-CHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCC-EeeccceecHHH
Confidence            633221       233 37777888887643 3667666552       221 23333   469999 666667775444


Q ss_pred             HHHHHHHHH
Q 031554          139 PAHVISLMR  147 (157)
Q Consensus       139 ~~~~~~~l~  147 (157)
                      ..+.++.++
T Consensus       176 ~~~f~~~~~  184 (281)
T TIGR00677       176 FLKFVNDCR  184 (281)
T ss_pred             HHHHHHHHH
Confidence            444444444

This protein is an FAD-containing flavoprotein.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=94.82  E-value=0.47  Score=38.97  Aligned_cols=97  Identities=20%  Similarity=0.218  Sum_probs=60.7

Q ss_pred             HHHHHHHHHcCC-ce-EEEecCCC----CHHhHHhhHhcCCCCCeEEEEeeeCCCC-----CcccchhHHHHHHHHHhhC
Q 031554           32 QELVQRIKSKGM-RP-GVALKPGT----SVEEVYPLVEGANPVEMVLVMTVEPGFG-----GQKFMPEMMDKVRSLRNRY  100 (157)
Q Consensus        32 ~~~i~~ir~~g~-~~-gl~l~~~t----~~~~~~~~~~~~~~~d~vl~m~v~pG~~-----gq~~~~~~~~ki~~l~~~~  100 (157)
                      ...++.+|+..- .+ ..-++..+    +.+.+.+.++. -+.|.+.+. ++|...     +.......++.|+.+++..
T Consensus       100 ~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~-~~adalel~-l~~~q~~~~~~~~~df~~~~~~i~~l~~~~  177 (326)
T cd02811         100 AESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEM-IEADALAIH-LNPLQEAVQPEGDRDFRGWLERIEELVKAL  177 (326)
T ss_pred             hhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHh-cCCCcEEEe-CcchHhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence            356667777643 22 33344433    56666666654 367888773 333211     2211223457788888763


Q ss_pred             CCCcEEE---EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554          101 PSLDIEV---DGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       101 ~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                       +++|.+   ..|.+.+.+..+.++|+|+++++.
T Consensus       178 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG  210 (326)
T cd02811         178 -SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG  210 (326)
T ss_pred             -CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence             566666   667899999999999999999854

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=94.78  E-value=0.1  Score=43.59  Aligned_cols=66  Identities=17%  Similarity=0.248  Sum_probs=48.0

Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ..|.|.+.  +-|..-..+-..+++-+.++++..++ ++|.+||||+ .-++...++.|||++-+|+.+.
T Consensus       239 g~~~I~vs--nhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L  306 (360)
T COG1304         239 GADGIEVS--NHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFL  306 (360)
T ss_pred             CceEEEEE--cCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHH
Confidence            44555542  33432233345677888888887664 8999999999 5888888999999999998754

>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]

Probab=94.75  E-value=1.6  Score=34.22  Aligned_cols=122  Identities=20%  Similarity=0.282  Sum_probs=68.7

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      +|......+..+|||.+|+|..-...-+ .+-+..+|+. ..++-+.+.|....  +.-.++  -++++|.+.   |-..
T Consensus        23 d~v~aa~iA~~aGAdgITvHlReDrRHI~d~Dv~~lr~~~~~~~NlE~a~teEm--l~ia~~--~kP~~vtLV---Pe~r   95 (243)
T COG0854          23 DPVEAAFIAEQAGADGITVHLREDRRHIQDRDVRILRALIDTRFNLEMAPTEEM--LAIALK--TKPHQVTLV---PEKR   95 (243)
T ss_pred             CHHHHHHHHHHcCCCceEeccCccccccchhhHHHHHHHcccceecccCchHHH--HHHHHh--cCCCeEEeC---CCch
Confidence            4566667778899999999975432211 2223333332 22344444444333  221222  478999775   5333


Q ss_pred             Ccccchh----------HHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554           82 GQKFMPE----------MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        82 gq~~~~~----------~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      .|--.+.          .-+-++++++..-.+.+-+|  -.++.+...++.||+.|=+=+.-|
T Consensus        96 ~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD--~d~~qi~aa~~~gA~~IELhTG~Y  156 (243)
T COG0854          96 EEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFID--PDPEQIEAAAEVGAPRIELHTGPY  156 (243)
T ss_pred             hhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeC--CCHHHHHHHHHhCCCEEEEecccc
Confidence            2222221          22234444444444666788  678999999999999987766554

>PRK09389 (R)-citramalate synthase; Provisional

Probab=94.73  E-value=1.1  Score=38.85  Aligned_cols=123  Identities=14%  Similarity=0.098  Sum_probs=83.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--AN   66 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~   66 (157)
                      ...++.+.++|++.|++..-..+-               .+.+.+++++++|.++-+..  .+.++.+.+.++.+.  -.
T Consensus        76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~  155 (488)
T PRK09389         76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEA  155 (488)
T ss_pred             HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhC
Confidence            345888999999998887654432               12556788999998766544  344566555444431  14


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      ++|.|.+    |.+.|.....+..+.++.+++.. +++|.+    |-|....|.-..+++||+.|  =+.+++
T Consensus       156 Ga~~i~l----~DTvG~~~P~~~~~lv~~l~~~~-~v~l~~H~HND~GlAvANalaAv~aGa~~V--d~Ti~G  221 (488)
T PRK09389        156 GADRICF----CDTVGILTPEKTYELFKRLSELV-KGPVSIHCHNDFGLAVANTLAALAAGADQV--HVTING  221 (488)
T ss_pred             CCCEEEE----ecCCCCcCHHHHHHHHHHHHhhc-CCeEEEEecCCccHHHHHHHHHHHcCCCEE--EEEccc
Confidence            6888765    67777776777777788888753 355655    67888888888889999975  334443

>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=94.69  E-value=0.06  Score=41.25  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          101 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       101 ~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      |+. +.|.||||.+|.....+-||.-+|+-|.+|+..
T Consensus        82 Pg~-LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g  117 (263)
T KOG3055|consen   82 PGG-LQVGGGINSENCMSWLEEGASKVIVTSWLFNNG  117 (263)
T ss_pred             CCc-eeecCccChHHHHHHHHhcCceEEEEEEeccCC
Confidence            443 789999999999999999999999999999744

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=94.69  E-value=0.99  Score=34.09  Aligned_cols=112  Identities=17%  Similarity=0.179  Sum_probs=63.9

Q ss_pred             HHHHHHHHhCCCCEEEEccc-CCcchHHHHHHHHHHc--CCceEEEecCCCCHHh-HHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVE-ISKDNWQELVQRIKSK--GMRPGVALKPGTSVEE-VYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e-~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~-~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      .++++.+ +.|.+++-+... ..... .+.++.+|+.  +..+++.+..-++-.. ++.+.+  .++|+|.+....    
T Consensus        15 ~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~--~Gad~i~vh~~~----   86 (206)
T TIGR03128        15 LELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFA--AGADIVTVLGVA----   86 (206)
T ss_pred             HHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHH--cCCCEEEEeccC----
Confidence            3455555 778888888421 11223 5788888887  5556655532333333 555444  589999865322    


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEc-CC--CHhhHHHHHHcCCCEEEEc
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDG-GL--GPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdG-GI--~~~~i~~~~~~Gad~vV~G  130 (157)
                      +..   ...+-++.+++.  ++++.++- +.  ..+.+..+.+.|+|.+-+.
T Consensus        87 ~~~---~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~  133 (206)
T TIGR03128        87 DDA---TIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVH  133 (206)
T ss_pred             CHH---HHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence            211   122234444443  56666641 32  2467777888899988664

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>TIGR01064 pyruv_kin pyruvate kinase

Probab=94.68  E-value=1.8  Score=37.49  Aligned_cols=143  Identities=13%  Similarity=0.154  Sum_probs=85.6

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEE--EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-C
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGV--ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-G   82 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl--~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-g   82 (157)
                      .-++.+.+.|+|+|.++.-...+.+..+-+++.+.+ ..+.+  -|....-++.+.+++   ...|.+++-.-+-+.. |
T Consensus       175 ~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~---~~~dgi~iG~gDL~~~lg  251 (473)
T TIGR01064       175 KDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIA---EASDGIMVARGDLGVEIP  251 (473)
T ss_pred             HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHH---hhCCcEEEchHHHHhhcC
Confidence            346777899999999994433333355666666655 24444  353334456778887   5578776642221111 1


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEc-------C-C-----CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDG-------G-L-----GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdG-------G-I-----~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      ..-.+...+++-...+. .+++..+..       + -     ....+..++..|+|++.+++-..--..|.++++.|+++
T Consensus       252 ~~~l~~~~~~ii~aara-ag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I  330 (473)
T TIGR01064       252 AEEVPIAQKKMIRKCNR-AGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKI  330 (473)
T ss_pred             cHHHHHHHHHHHHHHHH-cCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHH
Confidence            11112233333333332 245554443       1 1     34777788889999999998765557899999999998


Q ss_pred             HHHH
Q 031554          150 VEDA  153 (157)
Q Consensus       150 ~~~~  153 (157)
                      .+.+
T Consensus       331 ~~~~  334 (473)
T TIGR01064       331 AKEA  334 (473)
T ss_pred             HHHH
Confidence            8753

This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=94.68  E-value=0.99  Score=35.60  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=69.1

Q ss_pred             HHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCC
Q 031554            8 YVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFG   81 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~   81 (157)
                      .++.+.+.|...+-+..-.. +.. .+.++.+|+. |  +...+..|...+.+...++++.+.  .++++          
T Consensus        92 ~~~~~~~~G~~~~KiKvg~~~~~d-~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i----------  160 (265)
T cd03315          92 EARRALEAGFRTFKLKVGRDPARD-VAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYV----------  160 (265)
T ss_pred             HHHHHHHCCCCEEEEecCCCHHHH-HHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEE----------
Confidence            44456778999988875432 233 5778888875 3  455555666666666655543112  33333          


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEc
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAG  130 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~G  130 (157)
                      .|++.+..++-.+++++. .+++|+.|+++. .+.+.++.+. .+|++.+-
T Consensus       161 EeP~~~~d~~~~~~l~~~-~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k  210 (265)
T cd03315         161 EQPLPADDLEGRAALARA-TDTPIMADESAFTPHDAFRELALGAADAVNIK  210 (265)
T ss_pred             ECCCCcccHHHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence            233333445566677765 378999999986 6778777655 48887654

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]

Probab=94.54  E-value=1.5  Score=34.32  Aligned_cols=141  Identities=14%  Similarity=0.181  Sum_probs=93.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEE
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVL   72 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl   72 (157)
                      .++..+.+..++.||+-.|-..+              -+.++++.+++.|+++.+++.|+-.-  ++.-.+  -++|.|-
T Consensus        75 Eml~ia~~~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD~d~~q--i~aa~~--~gA~~IE  150 (243)
T COG0854          75 EMLAIALKTKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFIDPDPEQ--IEAAAE--VGAPRIE  150 (243)
T ss_pred             HHHHHHHhcCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeCCCHHH--HHHHHH--hCCCEEE
Confidence            45788899999999998764421              22678889999999999999865322  222221  4899998


Q ss_pred             EEeeeCCCCCcccch-------hHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccCC---CCH
Q 031554           73 VMTVEPGFGGQKFMP-------EMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGA---PEP  139 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~-------~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~~---~d~  139 (157)
                      +.|   |-.+..+..       ..+.++++..+.  ..++.+.+.=|+|-.|++.+.+. +..=+-+|-+|...   --.
T Consensus       151 LhT---G~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL~VnAGHgLty~Nv~~~a~~~~i~ElnIGH~iia~Av~~Gl  227 (243)
T COG0854         151 LHT---GPYADAHDAAEQARADAELERLAKAAKLAAELGLKVNAGHGLTYHNVKPLAAIPPLAELNIGHSIIARAVFVGL  227 (243)
T ss_pred             Eec---ccccccCChHHHHHHHHHHHHHHHHHHHHHHcCceEecCCCccccchHHHhcCCcceeecccHHHHHHHHHhhH
Confidence            864   433333331       134455554443  35788999999999999987554 34446677655532   245


Q ss_pred             HHHHHHHHHHHHHHh
Q 031554          140 AHVISLMRKSVEDAQ  154 (157)
Q Consensus       140 ~~~~~~l~~~~~~~~  154 (157)
                      .++++++++.+..++
T Consensus       228 ~~aV~~m~~~~~~~~  242 (243)
T COG0854         228 EEAVREMKRLMKRAR  242 (243)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            788888888877654

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional

Probab=94.52  E-value=0.67  Score=40.64  Aligned_cols=117  Identities=16%  Similarity=0.140  Sum_probs=80.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEec-----CCCCHHhHHhhHhc-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALK-----PGTSVEEVYPLVEG-   64 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~-----~~t~~~~~~~~~~~-   64 (157)
                      +.-++.+.++|++.|++-.-+.+.               .+.+.++++|++|.++-+...     +.++.+.+.++.+. 
T Consensus        88 d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~  167 (524)
T PRK12344         88 DPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAA  167 (524)
T ss_pred             HHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHH
Confidence            445788899999999887433221               125778889999988755322     23555544443320 


Q ss_pred             -CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           65 -ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        65 -~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                       -.++|.|.+    |.+.|...+....+.++.+++.. +++|.+    |-|....|.-..+++|||.|
T Consensus       168 ~~~Gad~i~l----~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~V  230 (524)
T PRK12344        168 AEAGADWVVL----CDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQV  230 (524)
T ss_pred             HhCCCCeEEE----ccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence             147888765    77778777777888888888765 566665    66888888888889999976

>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]

Probab=94.48  E-value=0.045  Score=42.76  Aligned_cols=84  Identities=24%  Similarity=0.370  Sum_probs=52.4

Q ss_pred             CCHHhHHhhHhc---CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCC
Q 031554           53 TSVEEVYPLVEG---ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGAN  125 (157)
Q Consensus        53 t~~~~~~~~~~~---~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad  125 (157)
                      ++.+.+.++++.   .+.+.+.-+|++.|-.....-....+.+++++++..    +++.- .==|.| .+.+..++.||.
T Consensus       137 ~~~~e~~~~~~~~~~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~-LSMGMS-~D~e~AI~~GaT  214 (228)
T COG0325         137 VPPEELDELAQEVQELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPPIDE-LSMGMS-NDYEIAIAEGAT  214 (228)
T ss_pred             CCHHHHHHHHHHHHhCCCCeEeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCe-ecCcCc-ccHHHHHHcCCC
Confidence            355555444431   378899999999885444333445666677765532    21110 111222 567778899999


Q ss_pred             EEEEcccccCCCC
Q 031554          126 CIVAGSSVFGAPE  138 (157)
Q Consensus       126 ~vV~GSai~~~~d  138 (157)
                      .|=+||+||+..+
T Consensus       215 ~VRIGtaiFg~r~  227 (228)
T COG0325         215 MVRIGTAIFGARD  227 (228)
T ss_pred             EEEEcHHhhCCCC
Confidence            9999999998654

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=94.48  E-value=1.5  Score=32.93  Aligned_cols=111  Identities=8%  Similarity=0.047  Sum_probs=63.2

Q ss_pred             HHHHHHHhCCCCEEEEc-----c-cCCcchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            7 DYVEPLGKAGASGFTFH-----V-EISKDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh-----~-e~~~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      +.++.+.+.|+|.+++-     . ...... .+.++.+++. ...+-+.+....+.+.++.+.+  .++|.|++.    +
T Consensus        15 ~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~-~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~--~gadgv~vh----~   87 (210)
T TIGR01163        15 EEVKAVEEAGADWIHVDVMDGHFVPNLTFG-PPVLEALRKYTDLPIDVHLMVENPDRYIEDFAE--AGADIITVH----P   87 (210)
T ss_pred             HHHHHHHHcCCCEEEEcCCCCCCCCCcccC-HHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHH--cCCCEEEEc----c
Confidence            45667788999999994     1 222223 6788888875 3332232333345555655554  578998873    2


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCEEEEcc
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~vV~GS  131 (157)
                        ++.  +...+.++.+++...  .+.+.-..+  .+.+.++ ..++|.+..++
T Consensus        88 --~~~--~~~~~~~~~~~~~g~--~~~~~~~~~t~~e~~~~~-~~~~d~i~~~~  134 (210)
T TIGR01163        88 --EAS--EHIHRLLQLIKDLGA--KAGIVLNPATPLEFLEYV-LPDVDLVLLMS  134 (210)
T ss_pred             --CCc--hhHHHHHHHHHHcCC--cEEEEECCCCCHHHHHHH-HhhCCEEEEEE
Confidence              222  234455666666643  333332232  3445554 45799987765

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=94.44  E-value=0.64  Score=38.67  Aligned_cols=113  Identities=13%  Similarity=0.073  Sum_probs=65.8

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHH-HHHcCCceEEE--ecCCCCH-----------HhHHhhHhcCCCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQR-IKSKGMRPGVA--LKPGTSV-----------EEVYPLVEGANPV   68 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~-ir~~g~~~gl~--l~~~t~~-----------~~~~~~~~~~~~~   68 (157)
                      .||...++.+.+.|+|.+..|.        ..++. .+.+..++++.  +|..|++           ..+++-++  -+.
T Consensus        91 ~dp~~~i~~a~~~g~dAv~~~~--------G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlr--LGA  160 (348)
T PRK09250         91 FDPENIVKLAIEAGCNAVASTL--------GVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALR--LGA  160 (348)
T ss_pred             cCHHHHHHHHHhcCCCEEEeCH--------HHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHH--CCC
Confidence            4889999999999999999993        33333 33443334343  4443322           12344443  378


Q ss_pred             CeEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEE----EcC-CCHh--------h----HHHHHHcCCCEEEE
Q 031554           69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEV----DGG-LGPS--------T----IAEAASAGANCIVA  129 (157)
Q Consensus        69 d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~v----dGG-I~~~--------~----i~~~~~~Gad~vV~  129 (157)
                      |.|-+ ++.||..   .....++.+.++.+..  .++++.+    -|+ ++.+        .    ++...+.|||++=+
T Consensus       161 dAV~~-tvy~Gs~---~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv  236 (348)
T PRK09250        161 VAVGA-TIYFGSE---ESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQ  236 (348)
T ss_pred             CEEEE-EEecCCH---HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEe
Confidence            88876 5888833   3346777777766542  3444332    232 3322        2    34457899998844

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=94.42  E-value=0.64  Score=37.49  Aligned_cols=118  Identities=17%  Similarity=0.204  Sum_probs=74.6

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCce----EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRP----GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-   81 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~----gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-   81 (157)
                      ..++.+.+. +|++-++.....++  +.++++.+.|.-+    |.+++|..-+..++++... ...++++   ++-|+. 
T Consensus        98 ~~~~~~ae~-vDilQIgAr~~rnt--dLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~-Gn~~vil---cERG~~f  170 (281)
T PRK12457         98 EQAAPVAEV-ADVLQVPAFLARQT--DLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREA-GNDRVIL---CERGSSF  170 (281)
T ss_pred             HHHHHHhhh-CeEEeeCchhhchH--HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHc-CCCeEEE---EeCCCCC
Confidence            367788887 99999998776664  8888888877433    5456654444445555543 4444443   355544 


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEE---------------cCCCH---hhHHHHHHcCCCEEEEcc
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVD---------------GGLGP---STIAEAASAGANCIVAGS  131 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vd---------------GGI~~---~~i~~~~~~Gad~vV~GS  131 (157)
                      |-.-..-.+.-|..++++.++++|.+|               ||-+.   .-++..+.+|||++.+=+
T Consensus       171 gy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv  238 (281)
T PRK12457        171 GYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA  238 (281)
T ss_pred             CCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence            111112234456777777678999998               44442   334456889999998774

>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3

Probab=94.34  E-value=0.86  Score=37.70  Aligned_cols=125  Identities=18%  Similarity=0.169  Sum_probs=71.7

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccC---------------------CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhH
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEI---------------------SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLV   62 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~---------------------~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~   62 (157)
                      ||..+++.+.++||.++.+-..-                     ..+.+.++.+++|++|+++|+-.++.+-.......-
T Consensus        92 D~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~  171 (346)
T PF01120_consen   92 DADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWHHPDYPPD  171 (346)
T ss_dssp             -HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTSS
T ss_pred             CHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhcCcccCCC
Confidence            78999999999999998874211                     123558999999999999999887653111000000


Q ss_pred             hcCCCCCeEEEEeeeCCCC-Cccc-chhHHHHHHHHHhhCCCCcEEEEcCCC--------HhhHHHHHHcCCCEEEEccc
Q 031554           63 EGANPVEMVLVMTVEPGFG-GQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG--------PSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        63 ~~~~~~d~vl~m~v~pG~~-gq~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~--------~~~i~~~~~~Gad~vV~GSa  132 (157)
                      .. .....     ..+... -+.+ .+..+..+++|-..+.--.|+.|||..        .+-...+.+...+++|.++.
T Consensus       172 ~~-~~~~~-----~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp~~ii~~r~  245 (346)
T PF01120_consen  172 EE-GDENG-----PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDPDEDWDSAELYNWIRKLQPDVIINNRW  245 (346)
T ss_dssp             CH-CHHCC-------HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCCCTHHHHHHHHHHHHHHSTTSEEECCC
T ss_pred             cc-CCccc-----ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCccccccCHHHHHHHHHHhCCeEEEeccc
Confidence            00 00000     000000 0111 224566777777666335699999986        23445567778888888865


Q ss_pred             cc
Q 031554          133 VF  134 (157)
Q Consensus       133 i~  134 (157)
                      ..
T Consensus       246 ~~  247 (346)
T PF01120_consen  246 GG  247 (346)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=94.30  E-value=0.83  Score=35.35  Aligned_cols=114  Identities=21%  Similarity=0.313  Sum_probs=67.0

Q ss_pred             HHHHHHhCCCCEEEEcccCC---c---chHHHHHHHHHHc--CCceEEEecCC-CCHHhHHhhHhc--CCCCCeEEEEee
Q 031554            8 YVEPLGKAGASGFTFHVEIS---K---DNWQELVQRIKSK--GMRPGVALKPG-TSVEEVYPLVEG--ANPVEMVLVMTV   76 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~---~---~~~~~~i~~ir~~--g~~~gl~l~~~-t~~~~~~~~~~~--~~~~d~vl~m~v   76 (157)
                      -++.+.+.|||-|-+.....   .   +.+.+.++.+++.  |+.+-+-+... -+.+.+....++  -.++|+|=.   
T Consensus        75 E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKT---  151 (211)
T TIGR00126        75 ETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKT---  151 (211)
T ss_pred             HHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEe---
Confidence            35678889999998885432   1   1224556666653  43333322111 121233232221  158999853   


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      ..||.+..   ...+.++.+++.. .+++|-+.|||+ .+++.++.++|++.+
T Consensus       152 sTGf~~~g---at~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~ri  201 (211)
T TIGR00126       152 STGFGAGG---ATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRI  201 (211)
T ss_pred             CCCCCCCC---CCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence            44665322   3344445554432 368999999999 789999999999977

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors

Probab=94.25  E-value=3.1  Score=36.17  Aligned_cols=140  Identities=12%  Similarity=0.117  Sum_probs=86.0

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK   84 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~   84 (157)
                      ..++...+.|+|+|.+..--..+.+.++-+++.+.|..+.+.  |....-++.+.+++   ..+|.|++-   ||-=|..
T Consensus       178 ~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~---~~~DgImIa---rgDLg~e  251 (480)
T cd00288         178 ADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEIL---EASDGIMVA---RGDLGVE  251 (480)
T ss_pred             HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHH---HhcCEEEEC---cchhhhh
Confidence            456778999999999986544444466666676666666665  44444567788888   679999875   4422222


Q ss_pred             c----chhHHHHHHHHHhhCCCCcEEEEcCC----------CH---hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           85 F----MPEMMDKVRSLRNRYPSLDIEVDGGL----------GP---STIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        85 ~----~~~~~~ki~~l~~~~~~~~I~vdGGI----------~~---~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      .    .+...+++-+..+. .+.++.+.-=+          |.   ..+...+--|+|++.+..-=-.-..|.++++.|.
T Consensus       252 ~g~~~v~~~qk~ii~~~~~-~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~  330 (480)
T cd00288         252 IPAEEVFLAQKMLIAKCNL-AGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMA  330 (480)
T ss_pred             cChHHHHHHHHHHHHHHHH-cCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHH
Confidence            2    22334444333333 24555443221          22   2334445569999998643322368899999999


Q ss_pred             HHHHHH
Q 031554          148 KSVEDA  153 (157)
Q Consensus       148 ~~~~~~  153 (157)
                      ++.+.+
T Consensus       331 ~I~~~a  336 (480)
T cd00288         331 RICLEA  336 (480)
T ss_pred             HHHHHH
Confidence            987753

Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.

>PLN02540 methylenetetrahydrofolate reductase

Probab=94.24  E-value=2.1  Score=37.92  Aligned_cols=142  Identities=17%  Similarity=0.262  Sum_probs=87.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchH---HHHHHHHHHc-CCceEEEe-cCCCCHHhHHhhHh-c-CCCCCeEEEEeeeC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNW---QELVQRIKSK-GMRPGVAL-KPGTSVEEVYPLVE-G-ANPVEMVLVMTVEP   78 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~---~~~i~~ir~~-g~~~gl~l-~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~p   78 (157)
                      ..-++.+...++++|+|-.-+...+.   .++.+.+++. |+.+.+=+ +.+.+.+.++..+. . ..++.-||.++-+|
T Consensus        18 ~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDp   97 (565)
T PLN02540         18 FERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDP   97 (565)
T ss_pred             HHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            45568888999999999976654321   5566666665 88877644 33445445555543 1 25789999988776


Q ss_pred             CCCCccc------chhHHHHHHHHHhhCCC-CcEEEEcC----C---------C-------HhhHHHHHHcCCCEEEEcc
Q 031554           79 GFGGQKF------MPEMMDKVRSLRNRYPS-LDIEVDGG----L---------G-------PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        79 G~~gq~~------~~~~~~ki~~l~~~~~~-~~I~vdGG----I---------~-------~~~i~~~~~~Gad~vV~GS  131 (157)
                      -.+++.+      -..+.+-|+.+|+++.+ +.|.|.|=    .         +       .+.+++=+++||| +++-=
T Consensus        98 p~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAd-FiITQ  176 (565)
T PLN02540         98 PHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGAD-LIITQ  176 (565)
T ss_pred             CCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCC-EEeec
Confidence            5444332      12477888888887543 66666532    1         1       1233333689999 66667


Q ss_pred             cccCCCCHHHHHHHHHH
Q 031554          132 SVFGAPEPAHVISLMRK  148 (157)
Q Consensus       132 ai~~~~d~~~~~~~l~~  148 (157)
                      .+|..+...+.++.+++
T Consensus       177 lfFD~d~f~~f~~~~r~  193 (565)
T PLN02540        177 LFYDTDIFLKFVNDCRQ  193 (565)
T ss_pred             cccCHHHHHHHHHHHHh
Confidence            77865444555554443

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=94.19  E-value=2.3  Score=33.81  Aligned_cols=115  Identities=12%  Similarity=0.107  Sum_probs=72.0

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHcCCceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSKGMRPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~g~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      .+|..+.+.+.+.||+.+++..|...  .. .+.++.+|+.--.+.+.-.--+ +.+..+-+.   .+.|.|+++.... 
T Consensus        70 ~~~~~~A~~~~~~GA~aisvlte~~~f~g~-~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~---~GAD~VlLi~~~l-  144 (260)
T PRK00278         70 FDPVEIAKAYEAGGAACLSVLTDERFFQGS-LEYLRAARAAVSLPVLRKDFIIDPYQIYEARA---AGADAILLIVAAL-  144 (260)
T ss_pred             CCHHHHHHHHHhCCCeEEEEecccccCCCC-HHHHHHHHHhcCCCEEeeeecCCHHHHHHHHH---cCCCEEEEEeccC-
Confidence            36889999999999999999866432  23 5788888886434544311112 333333344   6999999985442 


Q ss_pred             CCCcccchhHHH-HHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           80 FGGQKFMPEMMD-KVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        80 ~~gq~~~~~~~~-ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                            .+..++ -++..+++  +..+.||= -|.+.+....++|+|++-+++
T Consensus       145 ------~~~~l~~li~~a~~l--Gl~~lvev-h~~~E~~~A~~~gadiIgin~  188 (260)
T PRK00278        145 ------DDEQLKELLDYAHSL--GLDVLVEV-HDEEELERALKLGAPLIGINN  188 (260)
T ss_pred             ------CHHHHHHHHHHHHHc--CCeEEEEe-CCHHHHHHHHHcCCCEEEECC
Confidence                  122333 34444444  45544442 356677788899999887764

>PRK00955 hypothetical protein; Provisional

Probab=94.17  E-value=1.4  Score=39.44  Aligned_cols=110  Identities=17%  Similarity=0.309  Sum_probs=67.7

Q ss_pred             CCEEEEcccCCc-chH--HHHH-HHHHHcCCceEEEecCCCC-HHhHHhhHhcCCCCCeEEEEe------------ee--
Q 031554           17 ASGFTFHVEISK-DNW--QELV-QRIKSKGMRPGVALKPGTS-VEEVYPLVEGANPVEMVLVMT------------VE--   77 (157)
Q Consensus        17 ad~v~vh~e~~~-~~~--~~~i-~~ir~~g~~~gl~l~~~t~-~~~~~~~~~~~~~~d~vl~m~------------v~--   77 (157)
                      .|+|.|-.++.- +|-  ..+| +.+.++|.++|+.-.|++. .+.+..+    ..+.++...+            ..  
T Consensus        14 ~d~i~v~gdayvdhp~fg~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~~----g~P~l~~~vs~g~~dsmv~~yt~~~~   89 (620)
T PRK00955         14 LDFILVTGDAYVDHPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKL----GKPRLFFLVSAGNMDSMVNHYTASKK   89 (620)
T ss_pred             cCEEEEeCcccccCCccHHHHHHHHHHHCCCEEEEecCCCcCChHHHHhh----CCCcEEEEeccccHHHHHhhcchhhh
Confidence            478888766543 220  2334 4466789999999877653 3344433    5777765421            11  


Q ss_pred             --------CC-CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhh--------H------HHHHHcCCCEEEEcc
Q 031554           78 --------PG-FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST--------I------AEAASAGANCIVAGS  131 (157)
Q Consensus        78 --------pG-~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~--------i------~~~~~~Gad~vV~GS  131 (157)
                              || ..|..-...++.-.+.+|+.+|+++| |-||+-+.-        +      ..|...+||.+|.|=
T Consensus        90 ~r~~d~ytpgg~~~~rpdra~i~y~~~ik~~~p~~~I-vlGG~eaS~rr~~hyd~w~~~~~~siL~d~~aD~vv~Ge  165 (620)
T PRK00955         90 LRSKDAYSPGGKMGLRPDRATIVYCNKIKEAYPDVPI-IIGGIEASLRRFAHYDYWSDKVRRSILIDSGADLLVYGM  165 (620)
T ss_pred             cccccccCCCCccCCCcchHHHHHHHHHHHHCCCCcE-EeCChhhhccccccchhhhhhhhHHHhhccCCCEEEECC
Confidence                    33 22222233456667888888899876 778886533        1      136688999999884

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=94.15  E-value=2.9  Score=34.85  Aligned_cols=126  Identities=16%  Similarity=0.183  Sum_probs=84.5

Q ss_pred             HHHHHHHhCCCCEEEEcccCC---------cch---HHHHHHHHHHcCCceEEEe-------------------------
Q 031554            7 DYVEPLGKAGASGFTFHVEIS---------KDN---WQELVQRIKSKGMRPGVAL-------------------------   49 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~---------~~~---~~~~i~~ir~~g~~~gl~l-------------------------   49 (157)
                      ..+..+.++|.+.|.+=.-..         ++.   ..++++.++.+|+.+=-.|                         
T Consensus        89 e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~  168 (347)
T PRK09196         89 ATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSH  168 (347)
T ss_pred             HHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccch
Confidence            467788999998888764432         111   1567777887776541111                         


Q ss_pred             -cCCCCHHhHHhhHhcCCCCCeEEE--EeeeCCCCCcccch----hHHHHHHHHHhhCCCCcEEEEcCC-----------
Q 031554           50 -KPGTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMP----EMMDKVRSLRNRYPSLDIEVDGGL-----------  111 (157)
Q Consensus        50 -~~~t~~~~~~~~~~~~~~~d~vl~--m~v~pG~~gq~~~~----~~~~ki~~l~~~~~~~~I~vdGGI-----------  111 (157)
                       ..-|..+.+.++.+- -++|.+.+  .++| |..-+...|    -.++++++|++..++++++.=||-           
T Consensus       169 ~~~~T~PeeA~~Fv~~-TgvD~LAvaiGT~H-G~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~  246 (347)
T PRK09196        169 DQLLTDPEEAADFVKK-TQVDALAIAIGTSH-GAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIIN  246 (347)
T ss_pred             hhcCCCHHHHHHHHHH-hCcCeEhhhhcccc-CCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHH
Confidence             013667778888865 47887654  2333 322211112    356789999888767999888877           


Q ss_pred             ------------CHhhHHHHHHcCCCEEEEccccc
Q 031554          112 ------------GPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       112 ------------~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                                  ..++++++++.|+.-|=+++.+.
T Consensus       247 ~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~  281 (347)
T PRK09196        247 EYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLR  281 (347)
T ss_pred             HhcCCccccCCCCHHHHHHHHHCCCceEEeChHHH
Confidence                        66999999999999999998765

>KOG4202 consensus Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=94.10  E-value=1  Score=34.30  Aligned_cols=119  Identities=20%  Similarity=0.223  Sum_probs=69.3

Q ss_pred             CcChHHHH-HHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            2 VTNPLDYV-EPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         2 v~~p~~~i-~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      +.+|++++ +...+.+-|+|-+|..   ++ .+.+..   .+. +-+-+-|-+.-+..+.+-+. +..|++++- .+.|.
T Consensus       100 ~nqp~e~il~~~~~~~ldiVQLHG~---es-~~~~~~---L~r-pvikvfpln~n~~~~~~~~v-P~~d~~lvd-setGG  169 (227)
T KOG4202|consen  100 VNQPEETILRAADSSDLDIVQLHGN---ES-RAAFSR---LVR-PVIKVFPLNANEDGKLLNEV-PEEDWILVD-SETGG  169 (227)
T ss_pred             ecCCHHHHHHHHhhcCCceEEecCc---cc-HHHHHH---hCC-ceEEEEecCchhhhHhhccC-Cchhheeec-cccCc
Confidence            35677776 5557889999999975   34 333333   332 22223333333333333333 778877764 45566


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHH-HHHcCCCEEEEccccc
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAE-AASAGANCIVAGSSVF  134 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~-~~~~Gad~vV~GSai~  134 (157)
                      .|..|.=..+... -.|..   -.....||+|++|+.. +.-.+++++=+.|.+-
T Consensus       170 ~G~~~dW~~~s~~-~vr~~---~~~~LAGGltP~NV~dAlsi~~p~gvDVSsGve  220 (227)
T KOG4202|consen  170 SGKGFDWAQFSLP-SVRSR---NGWLLAGGLTPTNVSDALSILQPDGVDVSSGVE  220 (227)
T ss_pred             CcCccCHHHhcCc-ccccc---CceEEecCCCccchHHhhhhcCCceeeccCcee
Confidence            7766653322111 11111   2367899999999976 5567888887777654

>PRK09426 methylmalonyl-CoA mutase; Reviewed

Probab=94.02  E-value=1  Score=41.06  Aligned_cols=102  Identities=19%  Similarity=0.161  Sum_probs=65.2

Q ss_pred             HHHHHcCCceEEEecC--CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC
Q 031554           36 QRIKSKGMRPGVALKP--GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG  112 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~--~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~  112 (157)
                      ..++..|+.+  ..+.  .++.+.++..++  .++|.|.+-+...++     .+..-.-++.+++.. +++.|.+.|.+.
T Consensus       604 ~~l~~~GfeV--~~~~~~~s~e~~v~aa~~--~~a~ivvlcs~d~~~-----~e~~~~l~~~Lk~~G~~~v~vl~GG~~~  674 (714)
T PRK09426        604 TAFADLGFDV--DIGPLFQTPEEAARQAVE--NDVHVVGVSSLAAGH-----KTLVPALIEALKKLGREDIMVVVGGVIP  674 (714)
T ss_pred             HHHHhCCeeE--ecCCCCCCHHHHHHHHHH--cCCCEEEEeccchhh-----HHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            3455567776  2322  233444555554  688888775444332     222333455566664 357788888878


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      ++....+.++|+|.+     |+-..|..+.+..+++.+.
T Consensus       675 ~~~~~~l~~aGvD~~-----i~~g~d~~~~L~~l~~~l~  708 (714)
T PRK09426        675 PQDYDFLYEAGVAAI-----FGPGTVIADAAIDLLELLS  708 (714)
T ss_pred             hhhHHHHHhCCCCEE-----ECCCCCHHHHHHHHHHHHH
Confidence            888899999999987     4444588888888888775

>TIGR01418 PEP_synth phosphoenolpyruvate synthase

Probab=93.98  E-value=0.86  Score=41.87  Aligned_cols=116  Identities=7%  Similarity=0.062  Sum_probs=78.8

Q ss_pred             hCCCCE--EEEcc-cCCcchHHHHHHHHHHcC-------CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-----
Q 031554           14 KAGASG--FTFHV-EISKDNWQELVQRIKSKG-------MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP-----   78 (157)
Q Consensus        14 ~~gad~--v~vh~-e~~~~~~~~~i~~ir~~g-------~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-----   78 (157)
                      +.|+..  |.|+. .+.++. ....+.++..|       ..+|+.+....-+..+.+++   ..+|++.+.+-+-     
T Consensus       625 d~G~~~~~Im~PmV~s~eE~-~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia---~~vDfisIGtnDLtq~~l  700 (782)
T TIGR01418       625 EMGLTNVEVMIPFVRTPEEG-KRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFA---KEFDGFSIGSNDLTQLTL  700 (782)
T ss_pred             hcCCCCeEEEecCCCCHHHH-HHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHH---HhCCEEEECchHHHHHHh
Confidence            678777  66664 433443 56667776644       45777885555556788888   6699998864321     


Q ss_pred             ---------CCCCcccchhHHHHHHHHHhh--CCCCcEEEEcC---CCHhhHHHHHHcCCCEEEEcccc
Q 031554           79 ---------GFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGG---LGPSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        79 ---------G~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGG---I~~~~i~~~~~~Gad~vV~GSai  133 (157)
                               +..++...|..++-|+++.+.  ..++++.+-|.   -+++.++.+.+.|++.+.+++..
T Consensus       701 g~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~p~~~~~l~~~G~~~ls~~~d~  769 (782)
T TIGR01418       701 GVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEFLVEEGIDSISLNPDA  769 (782)
T ss_pred             CccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHcCCCEEEECcch
Confidence                     123555667777777776553  24677888663   26899999999999999998743

Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.

>PRK06852 aldolase; Validated

Probab=93.98  E-value=1.3  Score=36.20  Aligned_cols=84  Identities=19%  Similarity=0.155  Sum_probs=50.2

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCH-------------HhHHhhHhcCC-
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSV-------------EEVYPLVEGAN-   66 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~-------------~~~~~~~~~~~-   66 (157)
                      .||...++.+.+.|+|.+..|.        ..++........+++.  +|..|++             ..+++-+++ . 
T Consensus        59 ~dp~~~i~~~~~~g~dav~~~~--------G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrl-G~  129 (304)
T PRK06852         59 ADPEHLFRIASKAKIGVFATQL--------GLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEF-KE  129 (304)
T ss_pred             CCHHHHHHHHHhcCCCEEEeCH--------HHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhc-CC
Confidence            5899999999999999999993        3333333333344443  3433221             123444432 1 


Q ss_pred             ----CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh
Q 031554           67 ----PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR   99 (157)
Q Consensus        67 ----~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~   99 (157)
                          ++|.|.+ +++||.   .+..++++.+.++.+.
T Consensus       130 ~~~~~AdAV~v-~v~~Gs---~~E~~ml~~l~~v~~e  162 (304)
T PRK06852        130 NSGLNILGVGY-TIYLGS---EYESEMLSEAAQIIYE  162 (304)
T ss_pred             ccCCCceEEEE-EEecCC---HHHHHHHHHHHHHHHH
Confidence                1677766 578872   2345677777777664

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=93.92  E-value=0.74  Score=39.22  Aligned_cols=122  Identities=19%  Similarity=0.188  Sum_probs=77.4

Q ss_pred             HHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceE-EEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--
Q 031554            7 DYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPG-VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG--   81 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~g-l~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~--   81 (157)
                      .-++.+.++|.|.|.+-.-.-  ..- .+.++++|+.==..- ++=|.-|... .+.++.  .++|.+=+. .=+|.-  
T Consensus       254 ~rl~ll~~aGvdvviLDSSqGnS~~q-iemik~iK~~yP~l~ViaGNVVT~~q-a~nLI~--aGaDgLrVG-MGsGSiCi  328 (503)
T KOG2550|consen  254 ERLDLLVQAGVDVVILDSSQGNSIYQ-LEMIKYIKETYPDLQIIAGNVVTKEQ-AANLIA--AGADGLRVG-MGSGSICI  328 (503)
T ss_pred             HHHHHhhhcCCcEEEEecCCCcchhH-HHHHHHHHhhCCCceeeccceeeHHH-HHHHHH--ccCceeEec-cccCceee
Confidence            346788999999999873322  223 689999998532221 2223344443 344443  789987552 112200  


Q ss_pred             -------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           82 -------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        82 -------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                             |.+. -...-++.+.... .++++.+||||+ ..++......||+.+-+|+.+-.
T Consensus       329 Tqevma~GrpQ-~TAVy~va~~A~q-~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAg  388 (503)
T KOG2550|consen  329 TQKVMACGRPQ-GTAVYKVAEFANQ-FGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAG  388 (503)
T ss_pred             eceeeeccCCc-ccchhhHHHHHHh-cCCceeecCCcCccchhHhhhhcCchhheecceeee
Confidence                   1111 1234456665555 379999999998 68888989999999999987654

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=93.85  E-value=2.7  Score=33.43  Aligned_cols=119  Identities=16%  Similarity=0.073  Sum_probs=73.4

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEec-CCCCHH---hHHhhHhcCCCCCeEEEE-eeeCCCCC
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALK-PGTSVE---EVYPLVEGANPVEMVLVM-TVEPGFGG   82 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~-~~t~~~---~~~~~~~~~~~~d~vl~m-~v~pG~~g   82 (157)
                      .++.+.+ .+|++-+......+  ..+++++.+.|+-+.+.-. -.|+.+   .++++.+. ..-+++++- ++ -+|..
T Consensus        91 ~v~~~~e-~vdilqIgs~~~~n--~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~-Gn~~i~L~eRg~-~~Y~~  165 (250)
T PRK13397         91 QLEEAYD-YLDVIQVGARNMQN--FEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDT-GKSNIILCERGV-RGYDV  165 (250)
T ss_pred             HHHHHHh-cCCEEEECcccccC--HHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHc-CCCeEEEEcccc-CCCCC
Confidence            5666667 69999999777666  4899999888877666654 233332   23333321 333555554 33 34432


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEE----cCCCH---hhHHHHHHcCCCEEEEccc
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVD----GGLGP---STIAEAASAGANCIVAGSS  132 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vd----GGI~~---~~i~~~~~~Gad~vV~GSa  132 (157)
                      ..-..-.+.-+..+++.. +++|.+|    +|.+.   .-....+..|||++++-.-
T Consensus       166 ~~~n~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H  221 (250)
T PRK13397        166 ETRNMLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVH  221 (250)
T ss_pred             ccccccCHHHHHHHHHHh-CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEec
Confidence            211123455677777753 7899898    66653   3445568899999988753

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=93.77  E-value=2.4  Score=32.51  Aligned_cols=114  Identities=14%  Similarity=0.093  Sum_probs=67.6

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe-cC---------CCCHHhHHhhHhcCCCCCeEEE
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL-KP---------GTSVEEVYPLVEGANPVEMVLV   73 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l-~~---------~t~~~~~~~~~~~~~~~d~vl~   73 (157)
                      ++.++...+.++|+..+++-      . .+.++.+|+.--.+-+.+ .-         ....+.++...+  .++|+|++
T Consensus        24 ~~~~~a~a~~~~G~~~~~~~------~-~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~--aGad~I~~   94 (221)
T PRK01130         24 IMAAMALAAVQGGAVGIRAN------G-VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAA--AGADIIAL   94 (221)
T ss_pred             HHHHHHHHHHHCCCeEEEcC------C-HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHH--cCCCEEEE
Confidence            45677788899999888873      2 477788877533343311 10         011234555544  58998877


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      .... .....  .....+-++++++. +++++.++ .-+.+.+..+.++|+|.+++++
T Consensus        95 d~~~-~~~p~--~~~~~~~i~~~~~~-~~i~vi~~-v~t~ee~~~a~~~G~d~i~~~~  147 (221)
T PRK01130         95 DATL-RPRPD--GETLAELVKRIKEY-PGQLLMAD-CSTLEEGLAAQKLGFDFIGTTL  147 (221)
T ss_pred             eCCC-CCCCC--CCCHHHHHHHHHhC-CCCeEEEe-CCCHHHHHHHHHcCCCEEEcCC
Confidence            5322 10000  01233445555554 56766553 4478889999999999998753

>PF13941 MutL: MutL protein

Probab=93.74  E-value=4.2  Score=35.19  Aligned_cols=130  Identities=11%  Similarity=0.108  Sum_probs=85.0

Q ss_pred             CCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHH
Q 031554           16 GASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS   95 (157)
Q Consensus        16 gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~   95 (157)
                      |.=.+.+|.-..+-+.+..-+.+...|.++--.+....+-+.++++.+  -.+|.|++-+   |++|-. .+..+...+.
T Consensus        75 GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~--~~PDiILLaG---GtDgG~-~~~il~nA~~  148 (457)
T PF13941_consen   75 GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIRE--IRPDIILLAG---GTDGGN-KEVILHNAEM  148 (457)
T ss_pred             CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhc--cCCCEEEEeC---CccCCc-hHHHHHHHHH
Confidence            333455555444445355555666678887777766667777777776  4899999842   333322 3456667777


Q ss_pred             HHhhCCCCcEEEEcCCCH-hhHHHHHH-cCCCEEEEccc--ccCCCCHHHHHHHHHHHHH
Q 031554           96 LRNRYPSLDIEVDGGLGP-STIAEAAS-AGANCIVAGSS--VFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus        96 l~~~~~~~~I~vdGGI~~-~~i~~~~~-~Gad~vV~GSa--i~~~~d~~~~~~~l~~~~~  151 (157)
                      |.+...+++|.+.|.... +.++++.+ .|.+.+++---  =++.-++.-+-+.+++++.
T Consensus       149 La~~~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~  208 (457)
T PF13941_consen  149 LAEANLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFL  208 (457)
T ss_pred             HHhCCCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHH
Confidence            777777899999999994 88888766 89998877632  2334455555555555443

>TIGR02317 prpB methylisocitrate lyase

Probab=93.72  E-value=0.83  Score=37.00  Aligned_cols=116  Identities=16%  Similarity=0.243  Sum_probs=68.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccC----------C-cchHHHHHHH---HHHcCCceEEEecCCCC----------HHhHHhh
Q 031554            6 LDYVEPLGKAGASGFTFHVEI----------S-KDNWQELVQR---IKSKGMRPGVALKPGTS----------VEEVYPL   61 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~----------~-~~~~~~~i~~---ir~~g~~~gl~l~~~t~----------~~~~~~~   61 (157)
                      .+.++.+.++|+..+++---.          . -.+.++.+.+   +++.-...-+.|+.-|+          +++.+.|
T Consensus        91 ~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay  170 (285)
T TIGR02317        91 ARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAY  170 (285)
T ss_pred             HHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHH
Confidence            345899999999888874211          0 0122444444   44432233345544443          3556667


Q ss_pred             HhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE---EEEcCCCH-hhHHHHHHcCCCEEEEcccccC
Q 031554           62 VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI---EVDGGLGP-STIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        62 ~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I---~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .+  .+.|.|.+    ||..       ..+-++++.+..+ .++   ...||-++ -+++++.+.|++.++.|...+.
T Consensus       171 ~~--AGAD~vfi----~g~~-------~~e~i~~~~~~i~-~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~  234 (285)
T TIGR02317       171 VE--AGADMIFP----EALT-------SLEEFRQFAKAVK-VPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFR  234 (285)
T ss_pred             HH--cCCCEEEe----CCCC-------CHHHHHHHHHhcC-CCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHH
Confidence            65  58999987    4411       2334555555543 444   34466555 4788999999999999987764

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=93.71  E-value=1.8  Score=41.47  Aligned_cols=118  Identities=14%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCC-------C---CHH----hHHhhHhcCCCCCe
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPG-------T---SVE----EVYPLVEGANPVEM   70 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~-------t---~~~----~~~~~~~~~~~~d~   70 (157)
                      ..|++.+++.|.|.+-+--.-.+ ..+...++++|+.|..+..+|+=.       .   .++    .++++.+  .++|.
T Consensus       628 ~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~--~Gad~  705 (1143)
T TIGR01235       628 KYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEK--AGAHI  705 (1143)
T ss_pred             HHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHH--cCCCE
Confidence            35777888999999888522211 133788999999999887765421       2   233    3333433  47887


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      |.+    +...|......+.+.++.+|+.. +++|.+    |-|....|.-..+++|||+|=+.
T Consensus       706 I~i----kDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~a  764 (1143)
T TIGR01235       706 LGI----KDMAGLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVA  764 (1143)
T ss_pred             EEE----CCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEec
Confidence            766    56677776777788899998875 666665    55888888888899999997443

This enzyme plays a role in gluconeogensis but not glycolysis.

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=93.65  E-value=2.6  Score=32.52  Aligned_cols=109  Identities=17%  Similarity=0.212  Sum_probs=67.7

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee---CCCCCcccchhHHHHHHHHHhh-CCCCcEEE
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE---PGFGGQKFMPEMMDKVRSLRNR-YPSLDIEV  107 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~---pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~v  107 (157)
                      .+.++.+++.|+++++..- -++.+......   .+++||-.+--.   -|.+|    -..++.+.++.+. ..+.+|.+
T Consensus        91 l~ai~~L~~~gi~v~~T~V-~s~~Qa~~Aa~---AGA~yvsP~vgR~~~~g~dg----~~~i~~i~~~~~~~~~~tkil~  162 (211)
T cd00956          91 LKAIKKLSEEGIKTNVTAI-FSAAQALLAAK---AGATYVSPFVGRIDDLGGDG----MELIREIRTIFDNYGFDTKILA  162 (211)
T ss_pred             HHHHHHHHHcCCceeeEEe-cCHHHHHHHHH---cCCCEEEEecChHhhcCCCH----HHHHHHHHHHHHHcCCCceEEe
Confidence            6778888888888877532 23334444444   678886543111   11111    1233333333333 34678989


Q ss_pred             EcCCCHhhHHHHHHcCCCEEEEccccc----CCCCHHHHHHHHHH
Q 031554          108 DGGLGPSTIAEAASAGANCIVAGSSVF----GAPEPAHVISLMRK  148 (157)
Q Consensus       108 dGGI~~~~i~~~~~~Gad~vV~GSai~----~~~d~~~~~~~l~~  148 (157)
                      .|=-|+.++-+...+|+|.+-++-.++    +.+-..+.++.+.+
T Consensus       163 As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v~~F~~  207 (211)
T cd00956         163 ASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLE  207 (211)
T ss_pred             cccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHHHHHHH
Confidence            998899999999999999999996655    34555666666553

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=93.64  E-value=0.34  Score=40.29  Aligned_cols=112  Identities=22%  Similarity=0.221  Sum_probs=74.7

Q ss_pred             HHHHHHhCCCCEEEEccc----------CCcchHHHHHHHHHHcCCceEEEecCCC---CHHhHHhhHh-c-CCCCCeEE
Q 031554            8 YVEPLGKAGASGFTFHVE----------ISKDNWQELVQRIKSKGMRPGVALKPGT---SVEEVYPLVE-G-ANPVEMVL   72 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e----------~~~~~~~~~i~~ir~~g~~~gl~l~~~t---~~~~~~~~~~-~-~~~~d~vl   72 (157)
                      -+..+.+.|||.|.+..-          .+...+.+.++.++++|+++-+++|.-.   ..+.+.++++ + -.++|.|.
T Consensus        18 ~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDavi   97 (347)
T COG0826          18 DLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVI   97 (347)
T ss_pred             HHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEE
Confidence            455678889999999832          3333458899999999999999987543   2232233332 1 14788887


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE--cCCC-HhhHHHHHHcCCCEEEEcccc
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD--GGLG-PSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd--GGI~-~~~i~~~~~~Gad~vV~GSai  133 (157)
                      +-  +|         .   -|.-+++..|++++.+.  -.++ .+++.-+.+.|+..+|.-+-+
T Consensus        98 v~--Dp---------g---~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEl  147 (347)
T COG0826          98 VA--DP---------G---LIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPREL  147 (347)
T ss_pred             Ec--CH---------H---HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccC
Confidence            62  33         2   34555667777776554  3333 688888899998888877644

>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria

Probab=93.58  E-value=4.1  Score=34.67  Aligned_cols=133  Identities=12%  Similarity=0.147  Sum_probs=84.0

Q ss_pred             HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe------------cCC--CCHHhHHhhHhcCCCCCeEEEE
Q 031554            9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL------------KPG--TSVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l------------~~~--t~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      .+.+.+.|++++.+-.-..-   ...++.+++.   .++.|            +|.  -+...+.++.++ .++|.+.+ 
T Consensus       229 a~~~~~~G~~~~mv~~~~~G---~~~l~~l~~~---~~l~IhaHra~~ga~~r~p~~Gis~~vl~kl~RL-aGaD~~~~-  300 (406)
T cd08207         229 HDLVVEAGGTCVMVSLNSVG---LSGLAALRRH---SQLPIHGHRNGWGMLTRSPALGISFQAYQKLWRL-AGVDHLHV-  300 (406)
T ss_pred             HHHHHHhCCCeEEEeccccc---hHHHHHHHhc---CCceEEECCCcceecccCCCCCCcHHHHHHHHHH-cCCCcccc-
Confidence            45568899999998776544   4556666663   12222            222  233456777777 79999987 


Q ss_pred             eeeCCCCCcc-cchh-HHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHH-HHcC-CCEEEE-cccccCC-CCHHHHHH
Q 031554           75 TVEPGFGGQK-FMPE-MMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEA-ASAG-ANCIVA-GSSVFGA-PEPAHVIS  144 (157)
Q Consensus        75 ~v~pG~~gq~-~~~~-~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~-~~~G-ad~vV~-GSai~~~-~d~~~~~~  144 (157)
                         |+.+|.- +..+ ...-.+.++.-    ...+-=..-||+++..++.+ ...| .|++.. |..|++. +.+.+-.+
T Consensus       301 ---~~~~Gkf~~~~~~~~~~~~~~~~p~~~~~k~~~Pv~sgG~~~~~vp~~~~~~G~~Dvi~~aGGGi~gHP~G~~aGa~  377 (406)
T cd08207         301 ---NGLASKFWESDDSVIESARACLTPLGGPDDAAMPVFSSGQWGGQAPPTYRRLGSVDLLYLAGGGIMAHPDGPAAGVR  377 (406)
T ss_pred             ---CCCcCCcCCCcHHHHHHHHHHhCchhccCCCeeEeccCCCCHhHHHHHHHHhCCCceEEecCCceecCCCCchhHHH
Confidence               5554542 2222 23333333331    12334458999999999875 6778 588776 8899986 46777777


Q ss_pred             HHHHHHHH
Q 031554          145 LMRKSVED  152 (157)
Q Consensus       145 ~l~~~~~~  152 (157)
                      .+++.++-
T Consensus       378 A~rqA~ea  385 (406)
T cd08207         378 SLRQAWEA  385 (406)
T ss_pred             HHHHHHHH
Confidence            77776654

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=93.53  E-value=3.4  Score=33.49  Aligned_cols=123  Identities=20%  Similarity=0.207  Sum_probs=82.2

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHcCCce----EEEec----------CCCCHHhHHhhHhcC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSKGMRP----GVALK----------PGTSVEEVYPLVEGA   65 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~g~~~----gl~l~----------~~t~~~~~~~~~~~~   65 (157)
                      ...+..+.++|++.|.+-.-..+      .+ .++.+.++.+|+-+    |-.-.          .-|..+.+.++.+- 
T Consensus        87 ~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T-~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~-  164 (283)
T PRK07998         87 FEDVKQAVRAGFTSVMIDGAALPFEENIAFT-KEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVER-  164 (283)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHH-
Confidence            35778889999999988432211      12 56777888888654    22111          13677777888764 


Q ss_pred             CCCCeEEEE--eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCEEEEccccc
Q 031554           66 NPVEMVLVM--TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        66 ~~~d~vl~m--~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      -++|.+-+-  ++| |..-+  ..-.+++++++++.. +++++.=||-.  .+.+++.++.|+.-+-+|+.+.
T Consensus       165 TgvD~LAvaiGt~H-G~Y~~--p~l~~~~l~~I~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~  233 (283)
T PRK07998        165 TGCDMLAVSIGNVH-GLEDI--PRIDIPLLKRIAEVS-PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLR  233 (283)
T ss_pred             hCcCeeehhccccc-cCCCC--CCcCHHHHHHHHhhC-CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHH
Confidence            478876542  233 32211  112367888888774 78888888654  6999999999999999999875

>PF14871 GHL6: Hypothetical glycosyl hydrolase 6

Probab=93.47  E-value=0.56  Score=33.63  Aligned_cols=64  Identities=17%  Similarity=0.243  Sum_probs=47.4

Q ss_pred             ChHHHHHHHHhCCCCEEEEcc------------------cCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcC
Q 031554            4 NPLDYVEPLGKAGASGFTFHV------------------EISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGA   65 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~------------------e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~   65 (157)
                      +|..|++.+.++++|.+++..                  ....+.+.+.++++++.|+++-+-++....-...+      
T Consensus         1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~------   74 (132)
T PF14871_consen    1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAE------   74 (132)
T ss_pred             CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHH------
Confidence            689999999999999999922                  11234558999999999999988776664433332      


Q ss_pred             CCCCeEEE
Q 031554           66 NPVEMVLV   73 (157)
Q Consensus        66 ~~~d~vl~   73 (157)
                      ..+|+...
T Consensus        75 ~HPeW~~~   82 (132)
T PF14871_consen   75 RHPEWFVR   82 (132)
T ss_pred             hCCceeeE
Confidence            35777754

>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain

Probab=93.44  E-value=1.7  Score=30.23  Aligned_cols=90  Identities=16%  Similarity=0.138  Sum_probs=51.8

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHH-hHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVE-EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~-~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI  111 (157)
                      -.-..++++|..+.+.-  .++.+ .++++.+. ...|.|.+- +...   +  .....+-++.+|+..|+..|.+.|..
T Consensus         7 ~~aa~l~~~g~~v~~~~--~~~~~~~~~~~~~~-~~pdiv~~S-~~~~---~--~~~~~~~~~~ik~~~p~~~iv~GG~~   77 (127)
T cd02068           7 YLAAVLEDAGFIVAEHD--VLSADDIVEDIKEL-LKPDVVGIS-LMTS---A--IYEALELAKIAKEVLPNVIVVVGGPH   77 (127)
T ss_pred             HHHHHHHHCCCeeeecC--CCCHHHHHHHHHHh-cCCCEEEEe-eccc---c--HHHHHHHHHHHHHHCCCCEEEECCcc
Confidence            34456777775554432  23333 34444421 378888663 3321   1  12456667788888888877665555


Q ss_pred             CHhhHHH-HHHcCCCEEEEcc
Q 031554          112 GPSTIAE-AASAGANCIVAGS  131 (157)
Q Consensus       112 ~~~~i~~-~~~~Gad~vV~GS  131 (157)
                      -..+-.. +...++|.++.|=
T Consensus        78 ~t~~p~~~~~~~~~D~vv~GE   98 (127)
T cd02068          78 ATFFPEEILEEPGVDFVVIGE   98 (127)
T ss_pred             hhhCHHHHhcCCCCCEEEECC
Confidence            3333344 4678999998883

This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=93.39  E-value=2.9  Score=32.55  Aligned_cols=112  Identities=8%  Similarity=0.019  Sum_probs=68.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC---cc---hHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS---KD---NWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE   77 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~---~~---~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~   77 (157)
                      .+.++.+.+.|+|++|+=....   ++   - .++++++|+++  +.+=+=+.+.+|...++.+.+  .++|++.++   
T Consensus        22 ~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G-~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~--~Gad~itvH---   95 (228)
T PTZ00170         22 ADEAQDVLSGGADWLHVDVMDGHFVPNLSFG-PPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAK--AGASQFTFH---   95 (228)
T ss_pred             HHHHHHHHHcCCCEEEEecccCccCCCcCcC-HHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHH--cCCCEEEEe---
Confidence            3556677788999998863221   11   2 47999999986  333334668889988888875  489998664   


Q ss_pred             CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEE
Q 031554           78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCI  127 (157)
Q Consensus        78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~v  127 (157)
                      .-...+    ...+-++.+++....+-+.+--.-..+.+..+.+.+ +|.|
T Consensus        96 ~ea~~~----~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~V  142 (228)
T PTZ00170         96 IEATED----DPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMV  142 (228)
T ss_pred             ccCCch----HHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhH
Confidence            321111    123345656665433445555555678887775434 6655

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=93.35  E-value=1.9  Score=35.98  Aligned_cols=124  Identities=16%  Similarity=0.174  Sum_probs=68.2

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc-------------chH---HHHHHHHHHcCCc---eEEEecCCCCHHhHHhhHh----
Q 031554            7 DYVEPLGKAGASGFTFHVEISK-------------DNW---QELVQRIKSKGMR---PGVALKPGTSVEEVYPLVE----   63 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~-------------~~~---~~~i~~ir~~g~~---~gl~l~~~t~~~~~~~~~~----   63 (157)
                      ..++.+.++|++.+++..|+.+             +..   .+.++.+++.|++   .|+.+.-....+.+..++.    
T Consensus       164 e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~  243 (371)
T PRK09240        164 EEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRY  243 (371)
T ss_pred             HHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHH
Confidence            4457899999999999988852             111   4477778888986   4666654444433322220    


Q ss_pred             c---CCC----CCeEEEEeeeCC-CCCccc--chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHH-HHHcCCCEEEEccc
Q 031554           64 G---ANP----VEMVLVMTVEPG-FGGQKF--MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAE-AASAGANCIVAGSS  132 (157)
Q Consensus        64 ~---~~~----~d~vl~m~v~pG-~~gq~~--~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~-~~~~Gad~vV~GSa  132 (157)
                      +   .+.    +.+.-+|-+ || +..+..  ..+.++.|..+|-..|+..|.+.||=. .+++. ++..|+..+-+||+
T Consensus       244 L~~~~~~~~~sv~~~~l~P~-~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~-~~lrd~~~~~~~~~~~ag~~  321 (371)
T PRK09240        244 LQRKYWQAEYSISFPRLRPC-TGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRES-PEFRDNLIPLGITKMSAGSS  321 (371)
T ss_pred             HHHhCCCCceeeecCccccC-CCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCC-HHHHHHHHhhcceeeccCcc
Confidence            0   011    112223322 34 222221  124566677777778999999999943 33433 33344444444433

>smart00812 Alpha_L_fucos Alpha-L-fucosidase

Probab=93.34  E-value=1.3  Score=37.35  Aligned_cols=116  Identities=18%  Similarity=0.219  Sum_probs=68.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCC---------------------cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhH
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEIS---------------------KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLV   62 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~---------------------~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~   62 (157)
                      ||..+++.+.++|+.++.+-..-.                     .+.+.++.+++|++|+++|+-.++   .+.-.   
T Consensus        82 D~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~DW~~---  155 (384)
T smart00812       82 DPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDWFN---  155 (384)
T ss_pred             CHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HHhCC---
Confidence            789999999999999998742211                     235588999999999999997653   21111   


Q ss_pred             hcCCCCCeEEEE--eeeCCCCCcccchhH---HHHHHHHHhhCCCCcEEEEcCCC-------H-hhHHHHHHcCCCE---
Q 031554           63 EGANPVEMVLVM--TVEPGFGGQKFMPEM---MDKVRSLRNRYPSLDIEVDGGLG-------P-STIAEAASAGANC---  126 (157)
Q Consensus        63 ~~~~~~d~vl~m--~v~pG~~gq~~~~~~---~~ki~~l~~~~~~~~I~vdGGI~-------~-~~i~~~~~~Gad~---  126 (157)
                           .++-...  ...+ ..-..+....   +..+++|-..+....++-||+..       . +-+..+.+...++   
T Consensus       156 -----p~y~~~~~~~~~~-~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~~~v  229 (384)
T smart00812      156 -----PLYAGPTSSDEDP-DNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVKDTV  229 (384)
T ss_pred             -----Ccccccccccccc-ccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCccchhcHHHHHHHHHHhCCCCceE
Confidence                 1110000  0001 0111223333   66677776654347899999862       1 2223456677776   


Q ss_pred             EEEcc
Q 031554          127 IVAGS  131 (157)
Q Consensus       127 vV~GS  131 (157)
                      +|-.+
T Consensus       230 vvn~R  234 (384)
T smart00812      230 VVNDR  234 (384)
T ss_pred             EEEcc
Confidence            55444

O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.

>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain

Probab=93.33  E-value=2.4  Score=32.84  Aligned_cols=122  Identities=14%  Similarity=0.245  Sum_probs=65.2

Q ss_pred             hHHHHHHHHhCCCCEEEEc--cc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhh--HhcCCCCCeEEEEeeeC
Q 031554            5 PLDYVEPLGKAGASGFTFH--VE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPL--VEGANPVEMVLVMTVEP   78 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh--~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~--~~~~~~~d~vl~m~v~p   78 (157)
                      |...++.+.+.|.|.+++.  .+  ...+-+.++++.++++|+..-   ....+.+...++  ++. .++ -|-+++...
T Consensus        66 ~~~~~~~L~~~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~~---g~~~~~~~~~~~~i~~~-~g~-kVg~ig~t~  140 (239)
T cd07381          66 PPEVADALKAAGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAHA---GAGRNLEEARRPAILEV-NGI-KVAFLAYTY  140 (239)
T ss_pred             CHHHHHHHHHhCCCEEEcccccccccchHHHHHHHHHHHHcCCcee---ECCCCHHHhcCcEEEEE-CCE-EEEEEEEEC
Confidence            5668999999999999995  12  222233678888888887642   112222222221  111 221 244554432


Q ss_pred             CCCCcc----------c---chhHHHHHHHHHhhCCCC-cEEEEcCCCH---------hhHHHHHHcCCCEEEEccc
Q 031554           79 GFGGQK----------F---MPEMMDKVRSLRNRYPSL-DIEVDGGLGP---------STIAEAASAGANCIVAGSS  132 (157)
Q Consensus        79 G~~gq~----------~---~~~~~~ki~~l~~~~~~~-~I~vdGGI~~---------~~i~~~~~~Gad~vV~GSa  132 (157)
                      ...+..          +   .+...+.++++|+. .++ -+..=.|...         +-++.+.++|||+|+.|..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~  216 (239)
T cd07381         141 GTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHP  216 (239)
T ss_pred             CCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCC
Confidence            211110          1   12345567777775 343 2334455532         2334667899999988753

CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=93.19  E-value=3.1  Score=32.06  Aligned_cols=102  Identities=18%  Similarity=0.286  Sum_probs=69.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      ....+.+.+.|.+.+-+-..+ ++. .+.++.+++..  +.+|.  ..=+..+.++..++  .+.+++    +-|++   
T Consensus        23 ~~~~~al~~~Gi~~iEit~~t-~~a-~~~i~~l~~~~~~~~vGA--GTVl~~~~a~~a~~--aGA~Fi----vsP~~---   89 (204)
T TIGR01182        23 LPLAKALIEGGLRVLEVTLRT-PVA-LDAIRLLRKEVPDALIGA--GTVLNPEQLRQAVD--AGAQFI----VSPGL---   89 (204)
T ss_pred             HHHHHHHHHcCCCEEEEeCCC-ccH-HHHHHHHHHHCCCCEEEE--EeCCCHHHHHHHHH--cCCCEE----ECCCC---
Confidence            355678899999999999876 444 68888888753  33343  22245555666665  588988    35774   


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEE
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV  128 (157)
                        .++..+..+   +  .+++. +=|-.|+..+....++|+|.+=
T Consensus        90 --~~~v~~~~~---~--~~i~~-iPG~~TptEi~~A~~~Ga~~vK  126 (204)
T TIGR01182        90 --TPELAKHAQ---D--HGIPI-IPGVATPSEIMLALELGITALK  126 (204)
T ss_pred             --CHHHHHHHH---H--cCCcE-ECCCCCHHHHHHHHHCCCCEEE
Confidence              344443332   2  24443 4489999999999999999873

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=93.08  E-value=3.8  Score=32.80  Aligned_cols=123  Identities=23%  Similarity=0.359  Sum_probs=82.7

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      +.+..+.+.|-|+|-+-.     . ...++.+++.|..      +.++++.+...+   +.+-.|.+|  .|.  |+.  
T Consensus        14 n~v~rl~~~ghdvV~yD~-----n-~~av~~~~~~ga~------~a~sl~el~~~L---~~pr~vWlM--vPa--g~i--   72 (300)
T COG1023          14 NLVRRLLDGGHDVVGYDV-----N-QTAVEELKDEGAT------GAASLDELVAKL---SAPRIVWLM--VPA--GDI--   72 (300)
T ss_pred             HHHHHHHhCCCeEEEEcC-----C-HHHHHHHHhcCCc------cccCHHHHHHhc---CCCcEEEEE--ccC--CCc--
Confidence            456788899999988853     3 5778888888832      234455555555   778888888  342  221  


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHH---HHHcCCCEEEEccc--ccCC--------CCHHHHHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAE---AASAGANCIVAGSS--VFGA--------PEPAHVISLMRKSVE  151 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~---~~~~Gad~vV~GSa--i~~~--------~d~~~~~~~l~~~~~  151 (157)
                        +-+-|+++......-.+.+|||=+  .+++++   +.+.|.+.+=+|++  +.+.        .-+.++.+.+.-+++
T Consensus        73 --t~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~  150 (300)
T COG1023          73 --TDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFK  150 (300)
T ss_pred             --hHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHH
Confidence              222456666665566799999998  466665   89999999988853  5543        245677777766665


Q ss_pred             H
Q 031554          152 D  152 (157)
Q Consensus       152 ~  152 (157)
                      .
T Consensus       151 ~  151 (300)
T COG1023         151 A  151 (300)
T ss_pred             h
Confidence            3

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=93.05  E-value=2.9  Score=31.30  Aligned_cols=111  Identities=13%  Similarity=0.161  Sum_probs=69.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc--CCceEEEecCCCCHHh-HHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK--GMRPGVALKPGTSVEE-VYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~-~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      .+.++.+.+. ++++-++.... ..- .+.++.+|++  +..+.+.+...++.+. ++.+.+  .++|++.++...    
T Consensus        16 ~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~--aGad~i~~h~~~----   87 (202)
T cd04726          16 LELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTADAGALEAEMAFK--AGADIVTVLGAA----   87 (202)
T ss_pred             HHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHh--cCCCEEEEEeeC----
Confidence            4566777777 89988853221 112 4788889886  6666665554555433 455443  589999886432    


Q ss_pred             CcccchhHHH-HHHHHHhhCCCCcEEEE--cCCCHhhHHHHHHcCCCEEEEc
Q 031554           82 GQKFMPEMMD-KVRSLRNRYPSLDIEVD--GGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        82 gq~~~~~~~~-ki~~l~~~~~~~~I~vd--GGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      +    +...+ -++.+++.  ++++.++  +--|++.+.++...|+|.+.++
T Consensus        88 ~----~~~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~  133 (202)
T cd04726          88 P----LSTIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDIVILH  133 (202)
T ss_pred             C----HHHHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence            1    12222 23444443  5677765  7777888878888899998875

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=93.02  E-value=2  Score=33.87  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=68.8

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH----------HhHHhhHhcCCCCCeEE
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV----------EEVYPLVEGANPVEMVL   72 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~----------~~~~~~~~~~~~~d~vl   72 (157)
                      .+|..+++++.+.|++.|+++.-...     ........+..+.+.++..+|.          ..+++.++  .++|.|.
T Consensus        36 ~~~~~~~~~a~~~~~~~v~~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~--~Ga~~v~  108 (258)
T TIGR01949        36 VDIRKTVNEVAEGGADAVLLHKGIVR-----RGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIR--MGADAVS  108 (258)
T ss_pred             CCHHHHHHHHHhcCCCEEEeCcchhh-----hcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHH--CCCCEEE
Confidence            57889999999999999999854322     1112223455555566333333          23555554  5788887


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEE--------EcCCCHhhH----HHHHHcCCCEEEEc
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEV--------DGGLGPSTI----AEAASAGANCIVAG  130 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~v--------dGGI~~~~i----~~~~~~Gad~vV~G  130 (157)
                      +. .+.|..+   ..+.++.++++++.+  .++++.+        .|..+.+++    +...++|||.+-.+
T Consensus       109 ~~-~~~g~~~---~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~  176 (258)
T TIGR01949       109 IH-VNVGSDT---EWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP  176 (258)
T ss_pred             EE-EecCCch---HHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc
Confidence            75 3334221   234455666666543  3555544        344444454    34467999999765

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein

Probab=92.96  E-value=2.3  Score=37.35  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=81.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc------------c---hHHHHHHHHHHcCCceEEEec-----CCCCHHhHHhhHhc-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK------------D---NWQELVQRIKSKGMRPGVALK-----PGTSVEEVYPLVEG-   64 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~------------~---~~~~~i~~ir~~g~~~gl~l~-----~~t~~~~~~~~~~~-   64 (157)
                      .+.++.+.++|++.|++..-+.+            +   .+.+.++++|++|.++.+...     ..++.+.+.++++. 
T Consensus        84 d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a  163 (526)
T TIGR00977        84 DKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATA  163 (526)
T ss_pred             HHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHH
Confidence            35678999999999998543321            1   125568889999988754221     23566655555441 


Q ss_pred             -CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           65 -ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        65 -~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                       -.++|.|.+    |.+-|.....+..+.++.+++..+...|.+    |-|.-..|.-..+++||+.+
T Consensus       164 ~~aGad~i~i----~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~V  227 (526)
T TIGR00977       164 QQAGADWLVL----CDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMV  227 (526)
T ss_pred             HhCCCCeEEE----ecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence             247888876    566677767777788999988765444554    67888888888889999975

This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.

>PRK06267 hypothetical protein; Provisional

Probab=92.91  E-value=2  Score=35.63  Aligned_cols=105  Identities=18%  Similarity=0.266  Sum_probs=63.9

Q ss_pred             HHHHHHHHHcCCce--EEEecCCCCHHhHHhhHhc--CCCCCeEEEEee--eCCCCCccc----chhHHHHHHHHHhhCC
Q 031554           32 QELVQRIKSKGMRP--GVALKPGTSVEEVYPLVEG--ANPVEMVLVMTV--EPGFGGQKF----MPEMMDKVRSLRNRYP  101 (157)
Q Consensus        32 ~~~i~~ir~~g~~~--gl~l~~~t~~~~~~~~~~~--~~~~d~vl~m~v--~pG~~gq~~----~~~~~~ki~~l~~~~~  101 (157)
                      .+.++.+++.|+++  |+.+......+.+...++.  .-++|.+.+...  .||+.-...    ..+.++-+..+|-..|
T Consensus       156 ~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP  235 (350)
T PRK06267        156 KEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLNFP  235 (350)
T ss_pred             HHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHHCC
Confidence            56778889999995  4556545555554443331  136777655444  456431221    1245666777777789


Q ss_pred             CCcEEEEcCC--CHhhHHHHHHcCCCEE----EEcccccCCC
Q 031554          102 SLDIEVDGGL--GPSTIAEAASAGANCI----VAGSSVFGAP  137 (157)
Q Consensus       102 ~~~I~vdGGI--~~~~i~~~~~~Gad~v----V~GSai~~~~  137 (157)
                      +..| +.||-  +...+....-+|||++    ..|-++....
T Consensus       236 ~~~I-~~~~~~~~l~~~~~~~~aGaN~i~~~p~~g~ylt~~g  276 (350)
T PRK06267        236 KIKI-ITGTWVDKLTNIGPLIMSGSNVITKFPLFSMYGTKEG  276 (350)
T ss_pred             CCCc-chhhHhHhcchhhHHhhcCcceeeccchhccCcccCC
Confidence            9988 55552  2233444567999999    7888887653

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=92.88  E-value=1  Score=35.48  Aligned_cols=117  Identities=21%  Similarity=0.346  Sum_probs=68.0

Q ss_pred             hHHHHHHHHhCCCCEEEEcccC----Cc--chHHHHHHHHHH---cCCceEEEecCCCCH------------HhHHhhHh
Q 031554            5 PLDYVEPLGKAGASGFTFHVEI----SK--DNWQELVQRIKS---KGMRPGVALKPGTSV------------EEVYPLVE   63 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~----~~--~~~~~~i~~ir~---~g~~~gl~l~~~t~~------------~~~~~~~~   63 (157)
                      -.+.++.+.++|+..+++----    ..  .+.++...+||.   .--..++.|+.-|+.            ++.+.|.+
T Consensus        87 v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~e  166 (238)
T PF13714_consen   87 VARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAE  166 (238)
T ss_dssp             HHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHH
Confidence            3567889999999998885330    00  122555555443   322333555544433            45666776


Q ss_pred             cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554           64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                        .++|.|.+    ||..       ..+.++++.+.. +.++.+--+-..-++.+|.+.|+..++.|+..+.
T Consensus       167 --AGAD~ifi----~~~~-------~~~~i~~~~~~~-~~Pl~v~~~~~~~~~~eL~~lGv~~v~~~~~~~~  224 (238)
T PF13714_consen  167 --AGADMIFI----PGLQ-------SEEEIERIVKAV-DGPLNVNPGPGTLSAEELAELGVKRVSYGNSLLR  224 (238)
T ss_dssp             --TT-SEEEE----TTSS-------SHHHHHHHHHHH-SSEEEEETTSSSS-HHHHHHTTESEEEETSHHHH
T ss_pred             --cCCCEEEe----CCCC-------CHHHHHHHHHhc-CCCEEEEcCCCCCCHHHHHHCCCcEEEEcHHHHH
Confidence              69999876    4431       122345555543 4666665542237788888999999999988774

...

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

Probab=92.87  E-value=2.8  Score=33.77  Aligned_cols=117  Identities=17%  Similarity=0.170  Sum_probs=72.7

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEecCCC--CH-----HhHHhhHhc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALKPGT--SV-----EEVYPLVEG   64 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~~~t--~~-----~~~~~~~~~   64 (157)
                      +-++.+.++|++.|++..-+++.               .+.+.++++|++|.++.+.+.-.+  +.     +.+.++.+.
T Consensus        78 ~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~  157 (279)
T cd07947          78 EDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKL  157 (279)
T ss_pred             HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHH
Confidence            34688999999999987433321               125567778899998877763222  22     345555531


Q ss_pred             C--CCCC-eEEEEeeeCCCCCcccc-------hhHHHHHHHHHhh--CCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           65 A--NPVE-MVLVMTVEPGFGGQKFM-------PEMMDKVRSLRNR--YPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        65 ~--~~~d-~vl~m~v~pG~~gq~~~-------~~~~~ki~~l~~~--~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      .  .++| .|.+    +.+-|....       .+..+.++.+++.  .|+.+|.+    |-|.-..|.-...++||+.|
T Consensus       158 ~~~~G~~~~i~l----~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~v  232 (279)
T cd07947         158 SKESGIPVKIRL----CDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWV  232 (279)
T ss_pred             HHHCCCCEEEEe----ccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence            0  2577 4544    333343221       3455667777765  34444554    77888888888899999976

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=92.63  E-value=3.4  Score=32.07  Aligned_cols=140  Identities=17%  Similarity=0.168  Sum_probs=84.0

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC-------C-----HHhHHhhHhcCCCCCeE
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT-------S-----VEEVYPLVEGANPVEMV   71 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~-----~~~~~~~~~~~~~~d~v   71 (157)
                      +|..+++++.+.|++.|+++...   . ..+-+.....+.++++.++-+.       .     +..++..++  .++|-|
T Consensus        20 ~~~~~~~~a~~~~~~av~v~p~~---~-~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~--~GAd~v   93 (236)
T PF01791_consen   20 DIKKLCREAIEYGFDAVCVTPGY---V-KPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR--LGADEV   93 (236)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEGGG---H-HHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH--TT-SEE
T ss_pred             hHHHHHHHHHHhCCCEEEECHHH---H-HHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHH--cCCcee
Confidence            67889999999999999998653   2 3444444444668888885332       1     334455555  356665


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhh---------H----HHHHHcCCCEEEEcccccCC
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPST---------I----AEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~---------i----~~~~~~Gad~vV~GSai~~~  136 (157)
                      -++ ++.|..+.......++.++++++.  ..++++.+-+=.+.+.         +    +...++|||++=..+.-+ .
T Consensus        94 d~v-i~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~  171 (236)
T PF01791_consen   94 DVV-INYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-V  171 (236)
T ss_dssp             EEE-EEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-S
T ss_pred             eee-ccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-c
Confidence            543 344333332344566666666664  2456666665555444         2    345889999998877633 3


Q ss_pred             CCHHHHHHHHHHHHH
Q 031554          137 PEPAHVISLMRKSVE  151 (157)
Q Consensus       137 ~d~~~~~~~l~~~~~  151 (157)
                      ..-.+..+.+++..+
T Consensus       172 ~~t~~~~~~~~~~~~  186 (236)
T PF01791_consen  172 GATPEDVELMRKAVE  186 (236)
T ss_dssp             CSHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHH
Confidence            444566666777665

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=92.45  E-value=5.5  Score=33.33  Aligned_cols=121  Identities=15%  Similarity=0.053  Sum_probs=72.5

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC-CCCHHh--HHhhHhcCCCCCeEEEE-eeeCCCCCc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP-GTSVEE--VYPLVEGANPVEMVLVM-TVEPGFGGQ   83 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~-~t~~~~--~~~~~~~~~~~d~vl~m-~v~pG~~gq   83 (157)
                      .++.+.+. +|++-+......+  ..+++++.+.|+-+.+.-.. .|..+.  +.+++.....-+++++- ++. .|...
T Consensus       194 ~~~~l~~~-vd~lkI~s~~~~n--~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s-~yp~~  269 (360)
T PRK12595        194 DVEVALDY-VDVIQIGARNMQN--FELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIR-TYEKA  269 (360)
T ss_pred             HHHHHHHh-CCeEEECcccccC--HHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccC-CCCCC
Confidence            56777777 9999998776666  48999999999877776654 233322  22222221333555543 332 22111


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEE----cCCC---HhhHHHHHHcCCCEEEEcccc
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVD----GGLG---PSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vd----GGI~---~~~i~~~~~~Gad~vV~GSai  133 (157)
                      ....-.+.-|..+++.+ +++|.+|    +|-+   +.-....+..|||++++-.=+
T Consensus       270 ~~~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~  325 (360)
T PRK12595        270 TRNTLDISAVPILKQET-HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP  325 (360)
T ss_pred             CCCCcCHHHHHHHHHHh-CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence            12223566777778753 6889997    4422   123334578999999887655

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=92.38  E-value=5.2  Score=32.56  Aligned_cols=116  Identities=24%  Similarity=0.317  Sum_probs=68.7

Q ss_pred             HHHHHHHHhCCCCEEEEcccC---------C--cchHHHHHHHHH---HcCCceEEEecCCCC----------HHhHHhh
Q 031554            6 LDYVEPLGKAGASGFTFHVEI---------S--KDNWQELVQRIK---SKGMRPGVALKPGTS----------VEEVYPL   61 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~---------~--~~~~~~~i~~ir---~~g~~~gl~l~~~t~----------~~~~~~~   61 (157)
                      .+.++.+.++|+..|++---.         .  -.+.++.+++|+   +.....-+.|+.-|+          +++.+.|
T Consensus        96 ~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY  175 (292)
T PRK11320         96 ARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAY  175 (292)
T ss_pred             HHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHH
Confidence            345899999999888773210         0  012244444444   432233445544443          3556677


Q ss_pred             HhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE---EEEcCCCH-hhHHHHHHcCCCEEEEcccccC
Q 031554           62 VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI---EVDGGLGP-STIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        62 ~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I---~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .+  .+.|.|.+    ||..       ..+.++++.+.. +.++   ...||-++ -+..++.+.|++.++.|+..+.
T Consensus       176 ~e--AGAD~ifi----~~~~-------~~~~i~~~~~~~-~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~  239 (292)
T PRK11320        176 VE--AGADMIFP----EAMT-------ELEMYRRFADAV-KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFR  239 (292)
T ss_pred             HH--cCCCEEEe----cCCC-------CHHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHH
Confidence            75  58999987    4421       244555555543 3344   24456554 5788899999999999987653

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=92.35  E-value=1.7  Score=34.18  Aligned_cols=113  Identities=18%  Similarity=0.289  Sum_probs=62.3

Q ss_pred             HHHHHHHHhCCCCEEEE--------c-------ccCCcchHHHHHHHHHHc--CCceEEEecCC------------CCHH
Q 031554            6 LDYVEPLGKAGASGFTF--------H-------VEISKDNWQELVQRIKSK--GMRPGVALKPG------------TSVE   56 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~v--------h-------~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~------------t~~~   56 (157)
                      .+.++.+.++|++.|++        .       ....++- .+-++.+++.  ++ .-+.|+..            .-++
T Consensus        87 ~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~-~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~~~eai~  164 (243)
T cd00377          87 ARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEF-VAKIKAARDARDDL-PDFVIIARTDALLAGEEGLDEAIE  164 (243)
T ss_pred             HHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHH-HHHHHHHHHHHhcc-CCeEEEEEcCchhccCCCHHHHHH
Confidence            34577888999999999        1       1111111 3344444443  21 22222222            2345


Q ss_pred             hHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhHHHHHHcCCCEEEEcccc
Q 031554           57 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        57 ~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~GSai  133 (157)
                      +.+.|.+  .+.|.+.+.+..           ..+.++++.+.. +.++.+   .|+ +.-+..++.+.|++.++.|+..
T Consensus       165 Ra~ay~~--AGAD~v~v~~~~-----------~~~~~~~~~~~~-~~Pl~~~~~~~~-~~~~~~~l~~lG~~~v~~~~~~  229 (243)
T cd00377         165 RAKAYAE--AGADGIFVEGLK-----------DPEEIRAFAEAP-DVPLNVNMTPGG-NLLTVAELAELGVRRVSYGLAL  229 (243)
T ss_pred             HHHHHHH--cCCCEEEeCCCC-----------CHHHHHHHHhcC-CCCEEEEecCCC-CCCCHHHHHHCCCeEEEEChHH
Confidence            5666775  579999874222           224455555542 344333   333 1245666777899999999877


Q ss_pred             cC
Q 031554          134 FG  135 (157)
Q Consensus       134 ~~  135 (157)
                      +.
T Consensus       230 ~~  231 (243)
T cd00377         230 LR  231 (243)
T ss_pred             HH
Confidence            64

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]

Probab=92.33  E-value=5  Score=34.17  Aligned_cols=117  Identities=20%  Similarity=0.243  Sum_probs=83.4

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhc--CCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEG--ANP   67 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~--~~~   67 (157)
                      .-++.+.++|.+.|++-..+.+.               .+.+.++++|++|+.+...  --..|+.+.+.++.+.  ..+
T Consensus        80 ~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~g  159 (409)
T COG0119          80 RDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAG  159 (409)
T ss_pred             hhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcC
Confidence            35778899999999887655531               1256788899999887743  3345666655444431  134


Q ss_pred             CCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           68 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        68 ~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      ++.|.+    |.+-|-.......+.++.+++..+ ++.+.+    |-|.--.|.-.-+++||+-+
T Consensus       160 a~~i~l----~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v  220 (409)
T COG0119         160 ADRINL----PDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQV  220 (409)
T ss_pred             CcEEEE----CCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEE
Confidence            677765    677777767778888999998876 466666    77888788878889999976

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=92.17  E-value=5.4  Score=32.49  Aligned_cols=116  Identities=15%  Similarity=0.221  Sum_probs=68.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC-----------cchHHHHHHHH---HHcCCceEEEecCCC----------CHHhHHhh
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS-----------KDNWQELVQRI---KSKGMRPGVALKPGT----------SVEEVYPL   61 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~-----------~~~~~~~i~~i---r~~g~~~gl~l~~~t----------~~~~~~~~   61 (157)
                      .+.++.+.++|+..|++---..           -.+.++.+++|   ++.--..-+.|+.-|          -+++.+.|
T Consensus        95 ~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY  174 (294)
T TIGR02319        95 WRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREY  174 (294)
T ss_pred             HHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHH
Confidence            3468999999998888742110           01224444444   443222334554333          23556667


Q ss_pred             HhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE---EEEcCCCH-hhHHHHHHcCCCEEEEcccccC
Q 031554           62 VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI---EVDGGLGP-STIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        62 ~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I---~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .+  .+.|.|.+    ||..       ..+-++++.+..+ .++   .+.||-++ -++.++.+.|++.++.|...+.
T Consensus       175 ~e--AGAD~ifi----~~~~-------~~~ei~~~~~~~~-~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~  238 (294)
T TIGR02319       175 VA--AGADCIFL----EAML-------DVEEMKRVRDEID-APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWM  238 (294)
T ss_pred             HH--hCCCEEEe----cCCC-------CHHHHHHHHHhcC-CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHH
Confidence            66  68999976    4421       2234555555432 232   34455454 7899999999999999987764

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>COG0320 LipA Lipoate synthase [Coenzyme metabolism]

Probab=92.13  E-value=5.5  Score=32.32  Aligned_cols=128  Identities=14%  Similarity=0.194  Sum_probs=87.2

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEE-ecCCC--CHHhHHhhHhcCCCCCeEE
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVA-LKPGT--SVEEVYPLVEGANPVEMVL   72 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~-l~~~t--~~~~~~~~~~~~~~~d~vl   72 (157)
                      ..|.+..+...+.|-++|.+-.-+-|+       ...+++++||+.+=...+. |.|+.  ....++.+++  ..+|.+.
T Consensus       100 ~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~--~~pdV~n  177 (306)
T COG0320         100 DEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVAD--AGPDVFN  177 (306)
T ss_pred             chHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHh--cCcchhh
Confidence            468888999999999999887433332       2367899999988667774 55555  3344555554  4566553


Q ss_pred             E---------EeeeCCCCCcccchhHHHHHHHHHhhCCCC----cEEEEcCCCHh----hHHHHHHcCCCEEEEcccccC
Q 031554           73 V---------MTVEPGFGGQKFMPEMMDKVRSLRNRYPSL----DIEVDGGLGPS----TIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        73 ~---------m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~----~I~vdGGI~~~----~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .         -.|.||.+-    ...++-+++.+++.|++    -|.+.=|=+.+    ++..+.++|+|++.+|-++--
T Consensus       178 HNvETVprL~~~VRp~A~Y----~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqP  253 (306)
T COG0320         178 HNVETVPRLYPRVRPGATY----ERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQP  253 (306)
T ss_pred             cccccchhcccccCCCCcH----HHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCC
Confidence            2         233455432    23677788888877653    48888888864    445679999999999988864


Q ss_pred             C
Q 031554          136 A  136 (157)
Q Consensus       136 ~  136 (157)
                      +
T Consensus       254 S  254 (306)
T COG0320         254 S  254 (306)
T ss_pred             c
Confidence            3

>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family

Probab=92.07  E-value=4.2  Score=30.86  Aligned_cols=102  Identities=16%  Similarity=0.097  Sum_probs=61.4

Q ss_pred             CEEEEcccCCcchH-HH-HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHH
Q 031554           18 SGFTFHVEISKDNW-QE-LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS   95 (157)
Q Consensus        18 d~v~vh~e~~~~~~-~~-~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~   95 (157)
                      .++..-.+...+.+ .. +...++.+|.++ +.+.+++|.+.+.+.++- ..+|+|.+-...+-     -.+...+-+++
T Consensus        86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~v-i~LG~~vp~e~~v~~~~~-~~pd~v~lS~~~~~-----~~~~~~~~i~~  158 (197)
T TIGR02370        86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDV-IDLGRDVPIDTVVEKVKK-EKPLMLTGSALMTT-----TMYGQKDINDK  158 (197)
T ss_pred             eEEEEeCCCchhHHHHHHHHHHHHhCCcEE-EECCCCCCHHHHHHHHHH-cCCCEEEEcccccc-----CHHHHHHHHHH
Confidence            44444444333433 23 344566678764 356888999887666665 68899877433321     13445556777


Q ss_pred             HHhhC--CCCcEEEEcCCCHhhHHHHHHcCCCEEE
Q 031554           96 LRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        96 l~~~~--~~~~I~vdGGI~~~~i~~~~~~Gad~vV  128 (157)
                      +++..  ++++|.+.|..=-+  ....+.|||.+.
T Consensus       159 l~~~~~~~~v~i~vGG~~~~~--~~~~~~gad~~~  191 (197)
T TIGR02370       159 LKEEGYRDSVKFMVGGAPVTQ--DWADKIGADVYG  191 (197)
T ss_pred             HHHcCCCCCCEEEEEChhcCH--HHHHHhCCcEEe
Confidence            77763  45888888865422  234567999873

This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.

>PLN03228 methylthioalkylmalate synthase; Provisional

Probab=92.00  E-value=4  Score=35.73  Aligned_cols=118  Identities=16%  Similarity=0.109  Sum_probs=76.4

Q ss_pred             HHHHHHhC----CCCEEEEcccCCcch---------------HHHHHHHHHHcCCc-eEEEe--cCCCCHHhHHhhHhc-
Q 031554            8 YVEPLGKA----GASGFTFHVEISKDN---------------WQELVQRIKSKGMR-PGVAL--KPGTSVEEVYPLVEG-   64 (157)
Q Consensus         8 ~i~~~~~~----gad~v~vh~e~~~~~---------------~~~~i~~ir~~g~~-~gl~l--~~~t~~~~~~~~~~~-   64 (157)
                      -++.+.++    |++.|++..-..+.-               +.+.++++|++|.+ +.+..  ...++.+.+.++.+. 
T Consensus       169 dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a  248 (503)
T PLN03228        169 DIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEA  248 (503)
T ss_pred             hHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHH
Confidence            45666666    677788664333211               25688889999975 33322  224555554444321 


Q ss_pred             -CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC---CCcEEE----EcCCCHhhHHHHHHcCCCEEEE
Q 031554           65 -ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP---SLDIEV----DGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        65 -~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~---~~~I~v----dGGI~~~~i~~~~~~Gad~vV~  129 (157)
                       -.++|.|.+    +.+.|........+.++.+++..+   +++|.+    |-|....|.-..+++||+.+-+
T Consensus       249 ~~~Gad~I~l----~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~  317 (503)
T PLN03228        249 IKAGATSVGI----ADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEV  317 (503)
T ss_pred             HhcCCCEEEE----ecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEE
Confidence             146888765    677777777778888888887654   355554    6788888888888999999854

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=91.98  E-value=5.3  Score=31.82  Aligned_cols=122  Identities=18%  Similarity=0.107  Sum_probs=74.3

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHH---hHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVE---EVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~---~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      .++.+.+. +|++-+......++  ..++++.+.|+-+.+.-... |+.+   .++.+.+. ..-+++++.+-...|.+.
T Consensus       101 ~~~~l~~~-~d~lkI~s~~~~n~--~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~  176 (260)
T TIGR01361       101 DVEIVAEY-ADILQIGARNMQNF--ELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSS-GNGNVILCERGIRTFEKA  176 (260)
T ss_pred             hHHHHHhh-CCEEEECcccccCH--HHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHc-CCCcEEEEECCCCCCCCC
Confidence            45566666 88888887766664  79999999998877776544 3322   22333221 334555544323333232


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEE----cCCC---HhhHHHHHHcCCCEEEEccccc
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVD----GGLG---PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vd----GGI~---~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ....-.+..+..+|+.. +++|.+|    +|-+   .......+..|||++++-+-+.
T Consensus       177 ~~~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t  233 (260)
T TIGR01361       177 TRNTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPD  233 (260)
T ss_pred             CcCCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence            33345677788888764 6888885    3322   2233456789999998886554

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=91.85  E-value=5.3  Score=31.55  Aligned_cols=73  Identities=14%  Similarity=0.174  Sum_probs=41.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC---cchHHHHHHHHHHcCCceEEEecCCC-----------CHHhHHhhHhcCCCCCeE
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS---KDNWQELVQRIKSKGMRPGVALKPGT-----------SVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~---~~~~~~~i~~ir~~g~~~gl~l~~~t-----------~~~~~~~~~~~~~~~d~v   71 (157)
                      ..|++.+.+.|.|.|-+.--+.   .+...++++.++++|.++--.+...+           .++.+++.++  .++|+|
T Consensus        74 ~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~Le--AGA~~V  151 (237)
T TIGR03849        74 DEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLE--AGADYV  151 (237)
T ss_pred             HHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHH--CCCcEE
Confidence            4677777888888877773322   23335677777777766544332211           1222333344  577777


Q ss_pred             EEEeeeCCC
Q 031554           72 LVMTVEPGF   80 (157)
Q Consensus        72 l~m~v~pG~   80 (157)
                      ++=+.+-|.
T Consensus       152 iiEarEsg~  160 (237)
T TIGR03849       152 IIEGRESGK  160 (237)
T ss_pred             EEeehhcCC
Confidence            766555554

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)

Probab=91.78  E-value=3.5  Score=29.41  Aligned_cols=98  Identities=18%  Similarity=0.219  Sum_probs=57.1

Q ss_pred             HHHHHcCCceEEEecCCCCHHhH-HhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC--
Q 031554           36 QRIKSKGMRPGVALKPGTSVEEV-YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL--  111 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~~t~~~~~-~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI--  111 (157)
                      ..++.+|.++ +.+..+.|.+.+ +...+  .++|.|.+-+..    ++. .+..-+-+..+++... +++|.+.|++  
T Consensus        21 ~~L~~~GfeV-idLG~~v~~e~~v~aa~~--~~adiVglS~L~----t~~-~~~~~~~~~~l~~~gl~~v~vivGG~~~i   92 (128)
T cd02072          21 HAFTEAGFNV-VNLGVLSPQEEFIDAAIE--TDADAILVSSLY----GHG-EIDCKGLREKCDEAGLKDILLYVGGNLVV   92 (128)
T ss_pred             HHHHHCCCEE-EECCCCCCHHHHHHHHHH--cCCCEEEEeccc----cCC-HHHHHHHHHHHHHCCCCCCeEEEECCCCC
Confidence            3466678764 345556666554 43333  578988774433    222 1223334555566543 6889999985  


Q ss_pred             CHh----hHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHH
Q 031554          112 GPS----TIAEAASAGANCIVAGSSVFGAP-EPAHVISLMR  147 (157)
Q Consensus       112 ~~~----~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~~l~  147 (157)
                      ..+    ..+++.+.|+|.      +|... ++.+.+..|+
T Consensus        93 ~~~d~~~~~~~L~~~Gv~~------vf~pgt~~~~i~~~l~  127 (128)
T cd02072          93 GKQDFEDVEKRFKEMGFDR------VFAPGTPPEEAIADLK  127 (128)
T ss_pred             ChhhhHHHHHHHHHcCCCE------EECcCCCHHHHHHHHh
Confidence            334    446799999874      46543 5556555554

Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.

>COG1891 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.55  E-value=2  Score=32.62  Aligned_cols=121  Identities=14%  Similarity=0.099  Sum_probs=69.6

Q ss_pred             HhCCCCEEEEcccCCcc------hHHHHHHHHHHcCC-ceEEE--------ecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554           13 GKAGASGFTFHVEISKD------NWQELVQRIKSKGM-RPGVA--------LKPGTSVEEVYPLVEGANPVEMVLVMTVE   77 (157)
Q Consensus        13 ~~~gad~v~vh~e~~~~------~~~~~i~~ir~~g~-~~gl~--------l~~~t~~~~~~~~~~~~~~~d~vl~m~v~   77 (157)
                      +-+|||++-+..-...+      .+..+.++.|+.+- +..++        ++.-.|+..-+-..+  .++|.+++-+.-
T Consensus        77 av~GaDYiKVGLYg~kn~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~--ag~DvaMvDTai  154 (235)
T COG1891          77 AVAGADYIKVGLYGTKNEEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAE--AGADVAMVDTAI  154 (235)
T ss_pred             HhhCCceEEEeecccccHHHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHh--cCCCEEEEeccc
Confidence            56799999998533332      22445555666543 22222        122233322111112  588999876533


Q ss_pred             -CCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554           78 -PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        78 -pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                       -|..  .|.....+.+.+.-..  -.++..+..|.++.++++.+.+.|+|++=+-++.....
T Consensus       155 KDGks--lFdfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp~l~eig~DivGvRgaaC~~G  215 (235)
T COG1891         155 KDGKS--LFDFMDEEELEEFVDLAHEHGLEVALAGSLKFEHLPILKEIGPDIVGVRGAACEGG  215 (235)
T ss_pred             ccchh--HHhhhcHHHHHHHHHHHHHcchHHHhccccccccchHHHHhCCCeeeecchhccCC
Confidence             2322  2333333334333222  13688999999999999999999999986666666533

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=91.55  E-value=6.4  Score=31.89  Aligned_cols=126  Identities=21%  Similarity=0.279  Sum_probs=84.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHcCCceEEEec----------C-------CCCHHhHHhhH
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSKGMRPGVALK----------P-------GTSVEEVYPLV   62 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~g~~~gl~l~----------~-------~t~~~~~~~~~   62 (157)
                      ...+..+.++|.+.|.+=.-..+      .+ .++.+.++.+|+-+-..|.          .       -|..+.+.++.
T Consensus        86 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T-~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv  164 (287)
T PF01116_consen   86 FEDIKRAIDAGFTSVMIDGSALPFEENIAIT-REVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFV  164 (287)
T ss_dssp             HHHHHHHHHHTSSEEEEE-TTS-HHHHHHHH-HHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccccCCcCCHHHHHHHH-HHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHH
Confidence            45778889999999988643332      13 6677888888876644431          1       15667778887


Q ss_pred             hcCCCCCeEEEE--eeeCCCCCcccch-hHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCEEEEccccc
Q 031554           63 EGANPVEMVLVM--TVEPGFGGQKFMP-EMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        63 ~~~~~~d~vl~m--~v~pG~~gq~~~~-~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      +- .++|.+-+-  ++| |...+...| -.+++++++++..++++++.=||-.  .++++++++.|+.-|=+||.+.
T Consensus       165 ~~-TgvD~LAvaiGt~H-G~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~  239 (287)
T PF01116_consen  165 EE-TGVDALAVAIGTAH-GMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELR  239 (287)
T ss_dssp             HH-HTTSEEEE-SSSBS-SSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHH
T ss_pred             HH-hCCCEEEEecCccc-cccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHH
Confidence            65 589997653  222 322220122 3577888888875589999988755  6999999999999999998765

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea

Probab=91.52  E-value=1  Score=37.66  Aligned_cols=106  Identities=22%  Similarity=0.338  Sum_probs=62.3

Q ss_pred             hHHHHHHHHhCCCCEEEE--cc-cCCc----chHHHHHHHHHHcCCceEEEecCCCCH------HhHHhhHhcCCCCCeE
Q 031554            5 PLDYVEPLGKAGASGFTF--HV-EISK----DNWQELVQRIKSKGMRPGVALKPGTSV------EEVYPLVEGANPVEMV   71 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~v--h~-e~~~----~~~~~~i~~ir~~g~~~gl~l~~~t~~------~~~~~~~~~~~~~d~v   71 (157)
                      -..|++.+.+.|...|..  |. |...    ..+.++++.++++|+++.+.+||.+--      +.+..+.++  +++.+
T Consensus        16 ~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~l--Gi~~l   93 (357)
T PF05913_consen   16 NKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKEL--GIDGL   93 (357)
T ss_dssp             HHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHH--T-SEE
T ss_pred             HHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHc--CCCEE
Confidence            357899999999887654  42 2211    122577889999999999999988622      234444432  56655


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCC
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGAN  125 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad  125 (157)
                         -++-||+++        .+.++.+.  ++.|+.=-.. +.+.+..+.+.|+|
T Consensus        94 ---RlD~Gf~~~--------~ia~ls~n--g~~I~LNASti~~~~l~~L~~~~~~  135 (357)
T PF05913_consen   94 ---RLDYGFSGE--------EIAKLSKN--GIKIELNASTITEEELDELIKYGAN  135 (357)
T ss_dssp             ---EESSS-SCH--------HHHHHTTT---SEEEEETTT--CCHHHHHCCTT--
T ss_pred             ---EECCCCCHH--------HHHHHHhC--CCEEEEECCCCChHHHHHHHHhcCC
Confidence               446677652        22333322  4778887777 77888888888885

The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=91.46  E-value=0.97  Score=34.63  Aligned_cols=84  Identities=21%  Similarity=0.364  Sum_probs=49.9

Q ss_pred             HHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh
Q 031554           36 QRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS  114 (157)
Q Consensus        36 ~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~  114 (157)
                      +.+++.++-+.+-. ++++-.+..+.+.+  .++..+-+=     +.    .+..++-|+++++.+|++.|.+..=++.+
T Consensus         3 ~~l~~~~iiaVir~~~~~~a~~~~~al~~--gGi~~iEiT-----~~----t~~a~~~I~~l~~~~p~~~vGAGTV~~~e   71 (196)
T PF01081_consen    3 ERLKENKIIAVIRGDDPEDAVPIAEALIE--GGIRAIEIT-----LR----TPNALEAIEALRKEFPDLLVGAGTVLTAE   71 (196)
T ss_dssp             HHHHHHSEEEEETTSSGGGHHHHHHHHHH--TT--EEEEE-----TT----STTHHHHHHHHHHHHTTSEEEEES--SHH
T ss_pred             HHHhhCCEEEEEEcCCHHHHHHHHHHHHH--CCCCEEEEe-----cC----CccHHHHHHHHHHHCCCCeeEEEeccCHH
Confidence            44555555444432 22223334444554  466655441     11    13466778888888889888888888899


Q ss_pred             hHHHHHHcCCCEEEEc
Q 031554          115 TIAEAASAGANCIVAG  130 (157)
Q Consensus       115 ~i~~~~~~Gad~vV~G  130 (157)
                      +++...++||+.+|+=
T Consensus        72 ~a~~a~~aGA~FivSP   87 (196)
T PF01081_consen   72 QAEAAIAAGAQFIVSP   87 (196)
T ss_dssp             HHHHHHHHT-SEEEES
T ss_pred             HHHHHHHcCCCEEECC
Confidence            9999999999988753

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=91.45  E-value=4.7  Score=30.16  Aligned_cols=112  Identities=9%  Similarity=0.100  Sum_probs=65.1

Q ss_pred             HHHHHHHHhCCCCEEEE-----cc-cCCcchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            6 LDYVEPLGKAGASGFTF-----HV-EISKDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~v-----h~-e~~~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      .+.++.+.+.|+|++.+     +. ...... .+.++.+++. +....+.+-..++.+.++...+  .++|.|+++    
T Consensus        15 ~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~--~g~dgv~vh----   87 (211)
T cd00429          15 GEELKRLEEAGADWIHIDVMDGHFVPNLTFG-PPVVKALRKHTDLPLDVHLMVENPERYIEAFAK--AGADIITFH----   87 (211)
T ss_pred             HHHHHHHHHcCCCEEEEecccCCCCCccccC-HHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHH--cCCCEEEEC----
Confidence            44577889999999998     21 111112 3677888875 3555444444565555555553  478999874    


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-C-HhhHHHHHHcCCCEEEEcc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-G-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      +  ++.  +...+.++.+++.  +..+.++-+- + .+.+..+. .++|.+..++
T Consensus        88 ~--~~~--~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~-~~~d~i~~~~  135 (211)
T cd00429          88 A--EAT--DHLHRTIQLIKEL--GMKAGVALNPGTPVEVLEPYL-DEVDLVLVMS  135 (211)
T ss_pred             c--cch--hhHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHH-hhCCEEEEEE
Confidence            2  221  2334456666654  4555555443 2 34555554 4489887776

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=91.44  E-value=2.2  Score=30.49  Aligned_cols=67  Identities=12%  Similarity=0.000  Sum_probs=43.4

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccC--CcchHHHHHHHHHHcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEE
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEI--SKDNWQELVQRIKSKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVL   72 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl   72 (157)
                      .|+.+++.+.+.++|.|.+-.-.  ....+..+++.+++.|. .+-+.+.-.-|-+..+.+.+  .++|-+.
T Consensus        41 s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~--~Gvd~~~  110 (132)
T TIGR00640        41 TPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKE--MGVAEIF  110 (132)
T ss_pred             CHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHH--CCCCEEE
Confidence            57889999999999998887433  22233678888888776 44555542233344455554  3777775

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family

Probab=91.42  E-value=4.1  Score=32.08  Aligned_cols=115  Identities=16%  Similarity=0.169  Sum_probs=63.4

Q ss_pred             HHHHHHHhCCCCEEEEcccCC---------cchHHHHHHHHHHcCCceEEEecCCCCHHh--------HHhhHhcCCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEIS---------KDNWQELVQRIKSKGMRPGVALKPGTSVEE--------VYPLVEGANPVE   69 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~---------~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~--------~~~~~~~~~~~d   69 (157)
                      ..++.+.+.|+|.+..|--..         +.+..+ ++.+.++|+- -  ..++|++..        +.+.+   ..-+
T Consensus        48 ~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~-~~~li~~~I~-v--y~~Ht~lD~~~~G~n~~La~~L---gl~~  120 (249)
T TIGR00486        48 SVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGR-LKILLQNDIS-L--YSAHTNLDAHDGGNNDALARAL---GLEN  120 (249)
T ss_pred             HHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHH-HHHHHHCCCe-E--EEeecchhcCCCCHHHHHHHHc---CCCc
Confidence            467899999999999993211         122144 7778887753 2  233454432        44444   2222


Q ss_pred             eEEEEeeeC-CCC--Cc---cc-chhHHHHHHHHHhh------C-CC---CcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           70 MVLVMTVEP-GFG--GQ---KF-MPEMMDKVRSLRNR------Y-PS---LDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        70 ~vl~m~v~p-G~~--gq---~~-~~~~~~ki~~l~~~------~-~~---~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      .-.   ..+ |.+  |.   +. ..+..+++++.-+.      . ++   .+|++-+|-...-+....+.|||.+|.|-
T Consensus       121 ~~~---~~~~g~G~vg~l~~~~~~~~~~~~vk~~l~~~~vr~~~~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd  196 (249)
T TIGR00486       121 PKE---FEDYGLGRVGEFKAPIESLEEVLEIKKVLNVKPLLVVKNGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGD  196 (249)
T ss_pred             ccc---ccCCCceeEEECCCCCCHHHHHHHHHHHhCCCCEEEeCCCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecC
Confidence            111   111 222  11   11 12233344432111      0 11   25888888888888888899999999993

The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=91.36  E-value=0.64  Score=38.79  Aligned_cols=62  Identities=23%  Similarity=0.346  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc-cccC---CCCHHHHHHHHHHHH
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS-SVFG---APEPAHVISLMRKSV  150 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS-ai~~---~~d~~~~~~~l~~~~  150 (157)
                      ..+++|+.+++.. +.+|.|=|=++.+++..+.++|+|+|+++. .=.+   ...+...+.++++.+
T Consensus       212 ~~w~~i~~~~~~~-~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~  277 (356)
T PF01070_consen  212 LTWDDIEWIRKQW-KLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAV  277 (356)
T ss_dssp             -SHHHHHHHHHHC-SSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhccc-CCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhh
Confidence            3578899999874 788888888999999999999999888763 2222   234456666666544

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=91.34  E-value=1.6  Score=32.94  Aligned_cols=88  Identities=11%  Similarity=0.138  Sum_probs=51.5

Q ss_pred             HHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554           33 ELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI  111 (157)
                      ++++.+.+.+.-+.+-. ++++-.+.++..++  .++..|.+-.-.+         ...+.++.+++..+.+.+....=+
T Consensus         4 ~~~~~l~~~~~~~v~r~~~~~~~~~~~~~~~~--~Gv~~vqlr~k~~---------~~~e~~~~~~~~~~~~~~g~gtvl   72 (187)
T PRK07455          4 DWLAQLQQHRAIAVIRAPDLELGLQMAEAVAA--GGMRLIEITWNSD---------QPAELISQLREKLPECIIGTGTIL   72 (187)
T ss_pred             HHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHH--CCCCEEEEeCCCC---------CHHHHHHHHHHhCCCcEEeEEEEE
Confidence            55667766665554432 22233344455554  5788887742222         234455566665544445444445


Q ss_pred             CHhhHHHHHHcCCCEEEEcc
Q 031554          112 GPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +.+++....++|||.+++|.
T Consensus        73 ~~d~~~~A~~~gAdgv~~p~   92 (187)
T PRK07455         73 TLEDLEEAIAAGAQFCFTPH   92 (187)
T ss_pred             cHHHHHHHHHcCCCEEECCC
Confidence            57888888889999887774

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=91.27  E-value=1.5  Score=33.77  Aligned_cols=86  Identities=19%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             HHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCC
Q 031554           35 VQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLG  112 (157)
Q Consensus        35 i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI~  112 (157)
                      .+.+.+.+.-+.+-. +++.-.+.++.+++  .++..+.+---.         +...+.|+++++.+++ +.|.+..=++
T Consensus         4 ~~~l~~~~~~~v~r~~~~~~~~~~~~a~~~--gGi~~iEvt~~~---------~~~~~~i~~l~~~~~~~~~iGaGTV~~   72 (206)
T PRK09140          4 MQPFTKLPLIAILRGITPDEALAHVGALIE--AGFRAIEIPLNS---------PDPFDSIAALVKALGDRALIGAGTVLS   72 (206)
T ss_pred             hhHHHhCCEEEEEeCCCHHHHHHHHHHHHH--CCCCEEEEeCCC---------ccHHHHHHHHHHHcCCCcEEeEEecCC
Confidence            445555554433322 22222233444443  567777663222         2355678888877664 6777777777


Q ss_pred             HhhHHHHHHcCCCEEEEcc
Q 031554          113 PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GS  131 (157)
                      .+++....++|||.++++.
T Consensus        73 ~~~~~~a~~aGA~fivsp~   91 (206)
T PRK09140         73 PEQVDRLADAGGRLIVTPN   91 (206)
T ss_pred             HHHHHHHHHcCCCEEECCC
Confidence            9999999999999999874

>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R

Probab=91.23  E-value=8  Score=32.42  Aligned_cols=135  Identities=15%  Similarity=0.152  Sum_probs=78.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe----------cCCCCHHh---HHhhHhcCCCCCeEE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL----------KPGTSVEE---VYPLVEGANPVEMVL   72 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l----------~~~t~~~~---~~~~~~~~~~~d~vl   72 (157)
                      .+..+.+.++|++.+.+-.-..-   ...++.+++.....-+..          +|+. +..   +.++.++ .++|.++
T Consensus       208 ~~ra~~a~~~Ga~~vMv~~~~~G---~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~-is~~~~~~kl~Rl-aGad~~~  282 (364)
T cd08210         208 LERARFAKEAGAGGVLIAPGLTG---LDTFRELAEDFDFLPILAHPAFAGAFVSSGDG-ISHALLFGTLFRL-AGADAVI  282 (364)
T ss_pred             HHHHHHHHHcCCCEEEeecccch---HHHHHHHHhcCCCcEEEEccccccccccCCCc-ccHHHHHHHHHHH-hCCCEEE
Confidence            34567778899999998765433   345555555322011111          2332 332   5666655 6899886


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHH-HhhC----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEE-cccccCCCC-HHHHHH
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSL-RNRY----PSLDIEVDGGLGPSTIAEAA-SAGANCIVA-GSSVFGAPE-PAHVIS  144 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l-~~~~----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~-GSai~~~~d-~~~~~~  144 (157)
                      +.  +|+. +-.+.++.+.++.+. +...    +.++ +.-||+++..++++. ..|.|+++. |..|++.+| +.+-.+
T Consensus       283 ~~--~~~g-~~~~~~e~~~~ia~~~~~~~~~iK~~~P-v~sgG~~~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~~  358 (364)
T cd08210         283 FP--NYGG-RFGFSREECQAIADACRRPMGGLKPILP-APGGGMSVERAPEMVELYGPDVMLLIGGSLLRAGDDLTENTR  358 (364)
T ss_pred             eC--CCcC-CccCCHHHHHHHHHHhcCCccccCCCcC-cCCCCcCHHHHHHHHHHcCCcEEEEccccccCCCCChHHHHH
Confidence            53  3321 333455555555442 1111    1223 357899999998764 458887654 467998776 777777


Q ss_pred             HHHHH
Q 031554          145 LMRKS  149 (157)
Q Consensus       145 ~l~~~  149 (157)
                      .+++.
T Consensus       359 a~rqa  363 (364)
T cd08210         359 AFVEA  363 (364)
T ss_pred             HHHhh
Confidence            77764

rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=91.11  E-value=2.2  Score=41.75  Aligned_cols=115  Identities=17%  Similarity=0.235  Sum_probs=72.8

Q ss_pred             CCCEEEEcccCCc---chHHHHHHHHHHc--CCceEEEecCCCCHHhHHh-hHhcCCCCCeEEEEeeeCCCCCcccch--
Q 031554           16 GASGFTFHVEISK---DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYP-LVEGANPVEMVLVMTVEPGFGGQKFMP--   87 (157)
Q Consensus        16 gad~v~vh~e~~~---~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~-~~~~~~~~d~vl~m~v~pG~~gq~~~~--   87 (157)
                      |.|.++-..-..-   +.+...|..+|+.  +..+++=+...+-+..+.. +.+  ..+|+|++-+-+-|++..+...  
T Consensus       965 G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvak--a~aD~I~IdG~~GGTGAap~~~~~ 1042 (1485)
T PRK11750        965 GVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAK--AYADLITISGYDGGTGASPLTSVK 1042 (1485)
T ss_pred             CCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhh--cCCCEEEEeCCCCCcccccHHHHh
Confidence            6666654422111   1226677778887  4578887765555555442 222  5899999987776666444321  


Q ss_pred             -------hHHHHH-HHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554           88 -------EMMDKV-RSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        88 -------~~~~ki-~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa  132 (157)
                             ..+... +.|.+.  ...+.+.+|||+. ..++......|||.+-.|++
T Consensus      1043 ~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~ 1098 (1485)
T PRK11750       1043 YAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTG 1098 (1485)
T ss_pred             hCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchH
Confidence                   122222 223332  3458999999998 68888899999999999975

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=91.04  E-value=5.3  Score=29.97  Aligned_cols=103  Identities=18%  Similarity=0.313  Sum_probs=64.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      ...++.+.+.|++++-+...... . .+.++.+++.-  ..+|....  ...+.+...++  -+.|++..    |+..  
T Consensus        19 ~~~~~~l~~~G~~~vev~~~~~~-~-~~~i~~l~~~~~~~~iGag~v--~~~~~~~~a~~--~Ga~~i~~----p~~~--   86 (190)
T cd00452          19 LALAEALIEGGIRAIEITLRTPG-A-LEAIRALRKEFPEALIGAGTV--LTPEQADAAIA--AGAQFIVS----PGLD--   86 (190)
T ss_pred             HHHHHHHHHCCCCEEEEeCCChh-H-HHHHHHHHHHCCCCEEEEEeC--CCHHHHHHHHH--cCCCEEEc----CCCC--
Confidence            45678889999999999876544 3 67888888763  55565322  22223333332  57888853    4422  


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                         ++..+.    ++. .+.++.+ |--|.+.+.+..++|||.+-+
T Consensus        87 ---~~~~~~----~~~-~~~~~i~-gv~t~~e~~~A~~~Gad~i~~  123 (190)
T cd00452          87 ---PEVVKA----ANR-AGIPLLP-GVATPTEIMQALELGADIVKL  123 (190)
T ss_pred             ---HHHHHH----HHH-cCCcEEC-CcCCHHHHHHHHHCCCCEEEE
Confidence               233222    222 2445544 444899999999999999975

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=91.00  E-value=6.4  Score=32.42  Aligned_cols=119  Identities=10%  Similarity=0.073  Sum_probs=66.8

Q ss_pred             HHHHHHhCCCCEEEEcc----cCCcchHHHHHHHHHHc--CCceEEEecCCCC----HHhHHhhHhcCCCCCeEEEEeee
Q 031554            8 YVEPLGKAGASGFTFHV----EISKDNWQELVQRIKSK--GMRPGVALKPGTS----VEEVYPLVEGANPVEMVLVMTVE   77 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~----e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~----~~~~~~~~~~~~~~d~vl~m~v~   77 (157)
                      ..+.+.++|.....=..    +.++ . .+..+.+|+.  +.-+..-++....    .+.+.+..++ -..|.+.+. ++
T Consensus        75 La~~a~~~g~~~~~Gs~~~~~~~~~-~-~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~-i~adal~i~-ln  150 (333)
T TIGR02151        75 LARAARELGIPMGVGSQRAALKDPE-T-ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDM-IEADALAIH-LN  150 (333)
T ss_pred             HHHHHHHcCCCeEEcCchhhccChh-h-HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHH-hcCCCEEEc-Cc
Confidence            45566777744332221    1212 2 2334677774  3333333443222    3344444443 256777663 22


Q ss_pred             CCCC-----CcccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           78 PGFG-----GQKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        78 pG~~-----gq~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +...     |.......++.|+.+++.. +++|.|   ..|.+.+.++.+.++|+|.++++.
T Consensus       151 ~~q~~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg  211 (333)
T TIGR02151       151 VLQELVQPEGDRNFKGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG  211 (333)
T ss_pred             ccccccCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence            2111     2111234567888888864 567665   677899999999999999999975

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=90.92  E-value=6.8  Score=31.02  Aligned_cols=121  Identities=22%  Similarity=0.284  Sum_probs=76.2

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEE-EecCC--------------------C---CHHhHHhhH
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGV-ALKPG--------------------T---SVEEVYPLV   62 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl-~l~~~--------------------t---~~~~~~~~~   62 (157)
                      .-++.+..+|||=|++.-.+..+| +-+-+..++.|.++.+ ++.+.                    |   .+++.++.-
T Consensus        87 eD~~~ll~aGADKVSINsaAv~~p-~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e  165 (256)
T COG0107          87 EDARKLLRAGADKVSINSAAVKDP-ELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVE  165 (256)
T ss_pred             HHHHHHHHcCCCeeeeChhHhcCh-HHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHH
Confidence            456788899999999999888888 4444445556877644 34211                    1   235555555


Q ss_pred             hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcccccC
Q 031554           63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVFG  135 (157)
Q Consensus        63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai~~  135 (157)
                      +.  ++--|++=+.+-...-+-   +.++.++.+++.. ++|+.+-||.. ++++.+....| ||..-..| ||.
T Consensus       166 ~~--GAGEIlLtsmD~DGtk~G---yDl~l~~~v~~~v-~iPvIASGGaG~~ehf~eaf~~~~adAaLAAs-iFH  233 (256)
T COG0107         166 EL--GAGEILLTSMDRDGTKAG---YDLELTRAVREAV-NIPVIASGGAGKPEHFVEAFTEGKADAALAAS-IFH  233 (256)
T ss_pred             Hc--CCceEEEeeecccccccC---cCHHHHHHHHHhC-CCCEEecCCCCcHHHHHHHHHhcCccHHHhhh-hhh
Confidence            43  555566655543222222   3345556666654 68888889887 78888876555 99875555 554

>cd00945 Aldolase_Class_I Class I aldolases

Probab=90.89  E-value=5  Score=29.42  Aligned_cols=122  Identities=17%  Similarity=0.149  Sum_probs=66.4

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhcCCCCCeEEEEee
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      ...+.++.+.+.|+|.+.+..+    .+..+.+........+.+-++..+       ..+.++...+  .++|.++++.-
T Consensus        14 ~~~~~~~~~~~~gv~gi~~~g~----~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~--~Gad~i~v~~~   87 (201)
T cd00945          14 DIAKLCDEAIEYGFAAVCVNPG----YVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAID--LGADEIDVVIN   87 (201)
T ss_pred             HHHHHHHHHHHhCCcEEEECHH----HHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH--cCCCEEEEecc
Confidence            3567888999999999999862    212333333221233333344333       3344555554  47899987521


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhC-CCCcEEE---EcCC-CHhhHHHH----HHcCCCEEEEccc
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEV---DGGL-GPSTIAEA----ASAGANCIVAGSS  132 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~v---dGGI-~~~~i~~~----~~~Gad~vV~GSa  132 (157)
                       .++....-.+...+.++++++.. .++++.+   -+.. +.+.+.++    ...|+|++-..+.
T Consensus        88 -~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~  151 (201)
T cd00945          88 -IGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTG  151 (201)
T ss_pred             -HHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence             11111000245566677777653 3444332   2333 66666553    5689999876654

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=90.80  E-value=2.2  Score=33.12  Aligned_cols=87  Identities=20%  Similarity=0.346  Sum_probs=62.5

Q ss_pred             HHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554           32 QELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG  110 (157)
                      .+.+...++++.-+.+.. +++.-+...+.+++  .+++.|-+=-.         .|...+-|+++++.++++.|.+.==
T Consensus         4 ~~~~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~--gGi~~IEITl~---------sp~a~e~I~~l~~~~p~~lIGAGTV   72 (211)
T COG0800           4 MKILSKLKAQPVVPVIRGDDVEEALPLAKALIE--GGIPAIEITLR---------TPAALEAIRALAKEFPEALIGAGTV   72 (211)
T ss_pred             hHHHHHHHHCCeeEEEEeCCHHHHHHHHHHHHH--cCCCeEEEecC---------CCCHHHHHHHHHHhCcccEEccccc
Confidence            467778888887777754 34444445566665  57777755211         2357788999999988887877777


Q ss_pred             CCHhhHHHHHHcCCCEEEE
Q 031554          111 LGPSTIAEAASAGANCIVA  129 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~  129 (157)
                      +|++++.++.++||+.+|.
T Consensus        73 L~~~q~~~a~~aGa~fiVs   91 (211)
T COG0800          73 LNPEQARQAIAAGAQFIVS   91 (211)
T ss_pred             cCHHHHHHHHHcCCCEEEC
Confidence            8899999999999998764

>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional

Probab=90.76  E-value=7.8  Score=31.46  Aligned_cols=137  Identities=15%  Similarity=0.145  Sum_probs=76.8

Q ss_pred             HHHHHhCCCCEEEEcccCCc----chHHHHHHHH-HHcCCceEEEec-CCCCHHhHHhhHh-c-CCCCCeEEEEeeeCCC
Q 031554            9 VEPLGKAGASGFTFHVEISK----DNWQELVQRI-KSKGMRPGVALK-PGTSVEEVYPLVE-G-ANPVEMVLVMTVEPGF   80 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~----~~~~~~i~~i-r~~g~~~gl~l~-~~t~~~~~~~~~~-~-~~~~d~vl~m~v~pG~   80 (157)
                      ++.+.+.++++|+|-.-+..    .+ ..+...+ ++.|+.+..=+. -+.+...++..+. . ..+++-|+.++-+|-.
T Consensus        45 ~~~l~~~~p~fvsVT~~~~~~~~~r~-~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~  123 (296)
T PRK09432         45 IDRLSSLKPKFVSVTYGANSGERDRT-HSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLPP  123 (296)
T ss_pred             HHHHHhcCCCEEEEecCCCCcHHHHH-HHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            48889999999666544332    23 4455666 556888766442 2223333433222 1 2589999999887643


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCC------C--HhhHH---HHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL------G--PSTIA---EAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI------~--~~~i~---~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      ++........+-++-+++. ..+.|.|+|--      .  ..++.   +=.++||| +++-=.+|..+...+.++.+++
T Consensus       124 ~~~~~~~~a~dLv~li~~~-~~~~i~va~yPeghp~~~~~~~dl~~Lk~K~~aGA~-~~iTQ~~Fd~~~~~~f~~~~~~  200 (296)
T PRK09432        124 GSGKPEMYASDLVTLLKSV-ADFDISVAAYPEVHPEAKSAQADLINLKRKVDAGAN-RAITQFFFDVESYLRFRDRCVS  200 (296)
T ss_pred             CCCCCCcCHHHHHHHHHHh-CCCccceeeCCCCCCCCCCHHHHHHHHHHHHHcCCC-eeecccccchHHHHHHHHHHHH
Confidence            3322223345555655554 24556666552      1  12333   33679999 6666777865555555555443

>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4

Probab=90.60  E-value=0.31  Score=37.53  Aligned_cols=116  Identities=18%  Similarity=0.182  Sum_probs=69.4

Q ss_pred             HHhCCCCEEEEcc-cCCcchHHHHHHHHHHc---------CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee----
Q 031554           12 LGKAGASGFTFHV-EISKDNWQELVQRIKSK---------GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE----   77 (157)
Q Consensus        12 ~~~~gad~v~vh~-e~~~~~~~~~i~~ir~~---------g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~----   77 (157)
                      +.+.|+|+|.++. |+.++. ..+.+.++..         ...+.+.|.....++.+.+++.. +.+|.+.+...+    
T Consensus        80 ~l~~g~~gI~lP~ves~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~-~~v~~l~~G~~Dls~~  157 (221)
T PF03328_consen   80 ALDAGADGIVLPKVESAEDA-RQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAV-PGVDGLFFGPADLSAS  157 (221)
T ss_dssp             HHHTTSSEEEETT--SHHHH-HHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTS-TTEEEEEE-HHHHHHH
T ss_pred             hcccCCCeeeccccCcHHHH-HHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhccc-CCeeEEEeCcHHHHhh
Confidence            8899999999994 443443 6677776654         23455566444456777888755 788888876332    


Q ss_pred             CCCCCcccchhHHH---HHHHHHhhCCCCcEEEEc-CCCHhhHHHHHHcCCCEEEEcc
Q 031554           78 PGFGGQKFMPEMMD---KVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        78 pG~~gq~~~~~~~~---ki~~l~~~~~~~~I~vdG-GI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      -|..++.-.++...   ++....+.. ++. .+|+ -.+.++...+.+.|...+..|.
T Consensus       158 lG~~~~~~~~~~~~a~~~v~~aa~a~-g~~-~i~~~~~~~~d~~~~~~~~~~~~~~G~  213 (221)
T PF03328_consen  158 LGIPGQPDHPEVLEARSKVVLAARAA-GKP-AIDGVFPDFEDAEGLEAEGFRARALGF  213 (221)
T ss_dssp             TTTTTSTTSHHHHHHHHHHHHHHHHT-TEE-EEEEEESSSSHHHHHHHHHHHCCEEEE
T ss_pred             hccCCCCcchHHHHHHHHHHHHHHHc-CCC-eEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence            35555544444433   333333332 332 3555 3456778888888877777775

1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=90.53  E-value=7.7  Score=31.04  Aligned_cols=123  Identities=16%  Similarity=0.074  Sum_probs=73.2

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH---HhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV---YPLVEGANPVEMVLVMTVEPGFGGQK   84 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~---~~~~~~~~~~d~vl~m~v~pG~~gq~   84 (157)
                      .++.+.+. +|++-+......+.  ..++++-+.|+-+++.-...-.++.+   .+++......+.+++..-.+.+.+..
T Consensus       103 ~~~~l~~~-vd~~kIga~~~~n~--~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~  179 (266)
T PRK13398        103 DVEEVADY-ADMLQIGSRNMQNF--ELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYT  179 (266)
T ss_pred             hHHHHHHh-CCEEEECcccccCH--HHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCC
Confidence            45556666 88999987776664  78888888898887776544233222   22222213445555443111222222


Q ss_pred             cchhHHHHHHHHHhhCCCCcEEEEcC--CC-----HhhHHHHHHcCCCEEEEccccc
Q 031554           85 FMPEMMDKVRSLRNRYPSLDIEVDGG--LG-----PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        85 ~~~~~~~ki~~l~~~~~~~~I~vdGG--I~-----~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ...-.+..+..+++.. +++|.+|=+  +.     .......+.+|||++++-+-+.
T Consensus       180 ~~~vdl~~i~~lk~~~-~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~  235 (266)
T PRK13398        180 RNTLDLAAVAVIKELS-HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE  235 (266)
T ss_pred             HHHHHHHHHHHHHhcc-CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence            2223455677777663 688999633  33     3444556889999999987654

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase

Probab=90.31  E-value=4  Score=32.60  Aligned_cols=112  Identities=18%  Similarity=0.234  Sum_probs=70.3

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCce----EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRP----GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~----gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      .++.+.+. +|.+-++.....+.  +.++++.+.|.-+    |.+++|+.-+..++++... ..-++++   ++-|+   
T Consensus        85 ~~~~vae~-vDilQIgArn~rn~--~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~-Gn~~viL---cERG~---  154 (258)
T TIGR01362        85 QCEPVAEV-VDIIQIPAFLCRQT--DLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLST-GNKNILL---CERGT---  154 (258)
T ss_pred             HHHHHHhh-CcEEEeCchhcchH--HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHc-CCCcEEE---EeCCC---
Confidence            67777777 99999998776664  8888888877533    4455544444455665543 3444443   35554   


Q ss_pred             ccch----hHHHHHHHHHhhCCCCcEEEE---------------cCCCH---hhHHHHHHcCCCEEEEcc
Q 031554           84 KFMP----EMMDKVRSLRNRYPSLDIEVD---------------GGLGP---STIAEAASAGANCIVAGS  131 (157)
Q Consensus        84 ~~~~----~~~~ki~~l~~~~~~~~I~vd---------------GGI~~---~~i~~~~~~Gad~vV~GS  131 (157)
                      +|..    -.+.-+..+|+.  +++|.+|               ||.+.   .-++..+.+|||++.+=+
T Consensus       155 tf~y~r~~~D~~~ip~~k~~--~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv  222 (258)
T TIGR01362       155 SFGYNNLVVDMRSLPIMREL--GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET  222 (258)
T ss_pred             CcCCCCcccchhhhHHHHhc--CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence            2311    123446666665  6899998               55552   333446889999998874

In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=90.24  E-value=9.6  Score=31.67  Aligned_cols=61  Identities=28%  Similarity=0.311  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc----ccCCCCHHHHHHHHHHH
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS----VFGAPEPAHVISLMRKS  149 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa----i~~~~d~~~~~~~l~~~  149 (157)
                      ..++.|+++++.. +.+|.|=|--+.+.+..+.++|+|.|++...    +-....+...+.++++.
T Consensus       200 ~~~~~i~~l~~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~  264 (344)
T cd02922         200 LTWDDIKWLRKHT-KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKH  264 (344)
T ss_pred             CCHHHHHHHHHhc-CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHH
Confidence            4677888888874 6788888777899999999999999987632    22223444555555543

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=90.18  E-value=7.1  Score=30.08  Aligned_cols=117  Identities=19%  Similarity=0.159  Sum_probs=61.0

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceE------EEecC-CC----CHHhHHhhHhcCCCCCeE
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPG------VALKP-GT----SVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~g------l~l~~-~t----~~~~~~~~~~~~~~~d~v   71 (157)
                      .+|...++.+.+.|+|.++++.-....    +-+.. ..+...-      ..+.. ..    ....+++.++  .++|.|
T Consensus        21 ~d~~~~~~~~~~~g~~av~v~~~~~~~----~~~~~-~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~--~Ga~~v   93 (235)
T cd00958          21 EDPEETVKLAAEGGADAVALTKGIARA----YGREY-AGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVR--LGADAV   93 (235)
T ss_pred             cCHHHHHHHHHhcCCCEEEeChHHHHh----ccccc-CCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHH--CCCCEE
Confidence            578999999999999999998432111    11111 1121111      11111 11    1122444443  578877


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcC---------CCHhhHHH----HHHcCCCEEEEc
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGG---------LGPSTIAE----AASAGANCIVAG  130 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGG---------I~~~~i~~----~~~~Gad~vV~G  130 (157)
                      .++.. .|..   ...+.++.++++++..  .++++.++=-         .+.+++..    ..++|||.+-..
T Consensus        94 ~~~~~-~~~~---~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~  163 (235)
T cd00958          94 GVTVY-VGSE---EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK  163 (235)
T ss_pred             EEEEe-cCCc---hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec
Confidence            65432 2311   1234555666665532  3555444321         34556555    778899988663

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=90.02  E-value=3  Score=30.41  Aligned_cols=75  Identities=13%  Similarity=0.074  Sum_probs=52.8

Q ss_pred             CcChHHHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            2 VTNPLDYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         2 v~~p~~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      ...|+++++.+.+..+|.|-+-.-+-  ...+...++.+|++|..-.+ .+...-|.+.++++.+  ..+|-|.    .|
T Consensus        49 ~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~--~G~~~if----~p  122 (143)
T COG2185          49 FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKE--MGVDRIF----GP  122 (143)
T ss_pred             cCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHH--hCcceee----CC
Confidence            45688999999888888877763332  23347788899999877666 5666667777777766  3778775    36


Q ss_pred             CCCC
Q 031554           79 GFGG   82 (157)
Q Consensus        79 G~~g   82 (157)
                      |+.-
T Consensus       123 gt~~  126 (143)
T COG2185         123 GTPI  126 (143)
T ss_pred             CCCH
Confidence            6553

>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=90.00  E-value=7.3  Score=29.90  Aligned_cols=68  Identities=10%  Similarity=0.104  Sum_probs=42.6

Q ss_pred             ChHHHHHHHHhCCCCEEEEcc-cCCcchH-HHHHHHHHH----cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            4 NPLDYVEPLGKAGASGFTFHV-EISKDNW-QELVQRIKS----KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~-e~~~~~~-~~~i~~ir~----~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      +++ -++.+.++|||++=|-. +.++..+ .+..+.+.+    .-.++|++.+  .+.+.+.++++. ..+|+|++.+
T Consensus        10 ~~e-da~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~--~~~~~i~~~~~~-~~~d~vQLHG   83 (207)
T PRK13958         10 TIK-DVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVN--PDLTTIEHILSN-TSINTIQLHG   83 (207)
T ss_pred             cHH-HHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeC--CCHHHHHHHHHh-CCCCEEEECC
Confidence            344 45688999999998874 2222211 233344443    2245888885  567777777654 5789999964

>PRK10799 metal-binding protein; Provisional

Probab=89.98  E-value=3.9  Score=32.20  Aligned_cols=27  Identities=30%  Similarity=0.389  Sum_probs=23.6

Q ss_pred             cEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554          104 DIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus       104 ~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      +|++-||-....+....+.|||++|.|
T Consensus       167 rVAi~~GsG~~~i~~a~~~gaD~~ITG  193 (247)
T PRK10799        167 RVAWCTGGGQSFIDSAARFGVDAFITG  193 (247)
T ss_pred             EEEEECCchHHHHHHHHHcCCCEEEEC
Confidence            488888877888888889999999999

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=89.93  E-value=3.2  Score=32.56  Aligned_cols=69  Identities=12%  Similarity=0.095  Sum_probs=48.8

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc--hHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD--NWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~--~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      +...+.+.+.++|+|++++|.-....  .-.+.++.+++. +..+.+.-+-=++.+.+.++++  .++|.|++-
T Consensus       149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~--~GAd~Vmvg  220 (231)
T TIGR00736       149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK--AGADFVSVA  220 (231)
T ss_pred             hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH--hCCCeEEEc
Confidence            34577888999999999999655432  116788888886 3345566655567777777775  478998763

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type

Probab=89.83  E-value=12  Score=32.59  Aligned_cols=116  Identities=17%  Similarity=0.175  Sum_probs=76.4

Q ss_pred             HHHHHHhC----CCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEec--CCCCHHhHHhhHhc--
Q 031554            8 YVEPLGKA----GASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALK--PGTSVEEVYPLVEG--   64 (157)
Q Consensus         8 ~i~~~~~~----gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~--~~t~~~~~~~~~~~--   64 (157)
                      -++...++    +.+.|++..-+.+               +.+.+.++++|++|..+.+...  ..++.+.+.++.+.  
T Consensus        77 did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~  156 (494)
T TIGR00973        77 DIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAI  156 (494)
T ss_pred             hHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHH
Confidence            34545544    6777877643322               1125788889999987655542  22455555554431  


Q ss_pred             CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC---CCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           65 ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP---SLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        65 ~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~---~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      -.++|.|.+    |.+-|........+.++.+++..+   +++|.+    |-|.-..|.-..+++||+.|
T Consensus       157 ~~Ga~~i~l----~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~v  222 (494)
T TIGR00973       157 NAGATTINI----PDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQV  222 (494)
T ss_pred             HcCCCEEEe----CCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEE
Confidence            136777765    777787777778888888888755   355665    77888888888889999965

A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=89.80  E-value=7.8  Score=29.98  Aligned_cols=113  Identities=18%  Similarity=0.146  Sum_probs=66.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccC-CcchH-HHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEI-SKDNW-QELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~-~~~~~-~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      +|+ -+..+.+.|||++=|-.+. ++..+ .+.++.+.+.-   ..+|++.|  .+.+.+.++++. ..+|+|++.+-  
T Consensus        11 ~~e-da~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n--~~~~~i~~i~~~-~~ld~VQlHG~--   84 (208)
T COG0135          11 RLE-DAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVN--ESIEEILEIAEE-LGLDAVQLHGD--   84 (208)
T ss_pred             CHH-HHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECC--CCHHHHHHHHHh-cCCCEEEECCC--
Confidence            444 4567899999998776443 33311 45555555543   34666664  666666666654 46899999633  


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH---hhHHHHHHcCCCEEEEccc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP---STIAEAASAGANCIVAGSS  132 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~---~~i~~~~~~Gad~vV~GSa  132 (157)
                               +..+.++++++.. +++|+=.-.++.   .........-+|.+.+=|.
T Consensus        85 ---------e~~~~~~~l~~~~-~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~  131 (208)
T COG0135          85 ---------EDPEYIDQLKEEL-GVPVIKAISVSEEGDLELAAREEGPVDAILLDAK  131 (208)
T ss_pred             ---------CCHHHHHHHHhhc-CCceEEEEEeCCccchhhhhhccCCccEEEEcCC
Confidence                     2345667777664 555554444442   2333344566777766553

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=89.77  E-value=8.8  Score=30.54  Aligned_cols=121  Identities=12%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             HHHHHHHHhCCCCEEEEc-ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEE-eeeCCC---
Q 031554            6 LDYVEPLGKAGASGFTFH-VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVM-TVEPGF---   80 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh-~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m-~v~pG~---   80 (157)
                      ..+++.+.++|.|.|-+. +...+.. .+.++.+.+.+.+..+..-..-..+.++..++  .++|.|-+. ++.+.+   
T Consensus        25 ~~i~~~L~~~Gv~~IEvG~P~~~~~~-~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~--~g~~~i~i~~~~S~~~~~~  101 (262)
T cd07948          25 IEIAKALDAFGVDYIELTSPAASPQS-RADCEAIAKLGLKAKILTHIRCHMDDARIAVE--TGVDGVDLVFGTSPFLREA  101 (262)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCHHH-HHHHHHHHhCCCCCcEEEEecCCHHHHHHHHH--cCcCEEEEEEecCHHHHHH
Confidence            568899999999999985 3333333 56677776666555553211223344555554  467766553 222211   


Q ss_pred             -CCcccchhHHHHH----HHHHhhCCCC--cEEEEcCCCHhhH----HHHHHcCCCEEEEc
Q 031554           81 -GGQKFMPEMMDKV----RSLRNRYPSL--DIEVDGGLGPSTI----AEAASAGANCIVAG  130 (157)
Q Consensus        81 -~gq~~~~~~~~ki----~~l~~~~~~~--~I~vdGGI~~~~i----~~~~~~Gad~vV~G  130 (157)
                       -+.. .++.++++    +.+++....+  .++-..+..++.+    +.+.++|+|.+.+.
T Consensus       102 ~~~~~-~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~  161 (262)
T cd07948         102 SHGKS-ITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA  161 (262)
T ss_pred             HhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence             1211 23455555    4444443222  2333555665555    45678899988665

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]

Probab=89.73  E-value=3.8  Score=33.02  Aligned_cols=87  Identities=22%  Similarity=0.273  Sum_probs=58.1

Q ss_pred             HHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEE--EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchh
Q 031554           11 PLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGV--ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE   88 (157)
Q Consensus        11 ~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl--~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~   88 (157)
                      .....|+|.+++-.|.      +...-||.+-=...+  .+...++++.+++++   +.++.|.+.   ||-+-   .|.
T Consensus        52 sa~~~GaDL~HiFCe~------~Aa~vIKsYsPdLIVHP~l~~~~av~~i~k~L---~RlhavVIG---PGLGR---dp~  116 (306)
T KOG3974|consen   52 SALRVGADLSHIFCEP------EAAVVIKSYSPDLIVHPVLDQENAVDIIEKLL---QRLHAVVIG---PGLGR---DPA  116 (306)
T ss_pred             HHHHhccceeeeeech------hHHHHHhhcCCceeecccccCCchHhHHHHHH---hheeEEEEC---CCCCC---CHH
Confidence            3456799999998874      334456665433222  344456788889998   788888775   88775   456


Q ss_pred             HHHHHHHHHhh--CCCCcEEEEc-CCC
Q 031554           89 MMDKVRSLRNR--YPSLDIEVDG-GLG  112 (157)
Q Consensus        89 ~~~ki~~l~~~--~~~~~I~vdG-GI~  112 (157)
                      +++.++++-+.  ..++++++|| |+-
T Consensus       117 ~~k~i~~iley~~~~dvP~VIDaDGL~  143 (306)
T KOG3974|consen  117 ILKEIAKILEYLRGKDVPLVIDADGLW  143 (306)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEcCCceE
Confidence            66666666553  2478888887 444

>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase

Probab=89.70  E-value=6.1  Score=34.30  Aligned_cols=93  Identities=14%  Similarity=0.159  Sum_probs=53.6

Q ss_pred             HHHHH-HHHHcC-CceEEE-ec-CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE
Q 031554           32 QELVQ-RIKSKG-MRPGVA-LK-PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV  107 (157)
Q Consensus        32 ~~~i~-~ir~~g-~~~gl~-l~-~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v  107 (157)
                      ..++. .+++.| -.+-+. .+ ...+.+.+.+.+.- ..+|+|.+-+..|      ..+...+-++.+|+..|+..|.+
T Consensus        25 l~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~-~~pdvVgis~~t~------~~~~a~~~~~~~k~~~P~~~iV~   97 (497)
T TIGR02026        25 VAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA-HCPDLVLITAITP------AIYIACETLKFARERLPNAIIVL   97 (497)
T ss_pred             HHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh-cCcCEEEEecCcc------cHHHHHHHHHHHHHHCCCCEEEE
Confidence            34555 477888 566552 22 22344554444422 4789998743322      23445566677788888988855


Q ss_pred             EcCCCHhhHHHHHH--cCCCEEEEcc
Q 031554          108 DGGLGPSTIAEAAS--AGANCIVAGS  131 (157)
Q Consensus       108 dGGI~~~~i~~~~~--~Gad~vV~GS  131 (157)
                      .|.--.-.-+++.+  .++|.+|.|-
T Consensus        98 GG~h~t~~~~~~l~~~p~vD~Vv~GE  123 (497)
T TIGR02026        98 GGIHPTFMFHQVLTEAPWIDFIVRGE  123 (497)
T ss_pred             cCCCcCcCHHHHHhcCCCccEEEeCC
Confidence            55432223344443  4799999984

This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=89.63  E-value=9.8  Score=30.87  Aligned_cols=124  Identities=15%  Similarity=0.115  Sum_probs=83.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHcCCceEEEe------------cC----CCCHHhHHhhHh
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSKGMRPGVAL------------KP----GTSVEEVYPLVE   63 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~g~~~gl~l------------~~----~t~~~~~~~~~~   63 (157)
                      ...+..+.++|.+.|.+=.-..+      .+ .++.+.++.+|+-+=-.|            ..    -|..+.+.++.+
T Consensus        87 ~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T-~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~  165 (286)
T PRK12738         87 LDDIRRKVHAGVRSAMIDGSHFPFAENVKLV-KSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE  165 (286)
T ss_pred             HHHHHHHHHcCCCeEeecCCCCCHHHHHHHH-HHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHH
Confidence            45778889999988877543322      13 567778888886552111            11    356777888886


Q ss_pred             cCCCCCeEEEE--eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCEEEEccccc
Q 031554           64 GANPVEMVLVM--TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        64 ~~~~~d~vl~m--~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      - -++|.+.+=  ++| |...+ -..-.++++++|++.. +++++.=||-.  .++++++++.|+.-|=++|.+.
T Consensus       166 ~-TgvD~LAvaiGt~H-G~Y~~-~p~Ldfd~l~~I~~~~-~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~  236 (286)
T PRK12738        166 L-TGVDSLAVAIGTAH-GLYSK-TPKIDFQRLAEIREVV-DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELK  236 (286)
T ss_pred             H-hCCCEEEeccCccc-CCCCC-CCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence            5 488977542  233 22211 0123477888888875 78888888654  7999999999999999999775

>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap

Probab=89.61  E-value=8.2  Score=29.93  Aligned_cols=122  Identities=12%  Similarity=0.253  Sum_probs=65.3

Q ss_pred             hHHHHHHHHhCCCCEEEEcc--c--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhH--hcCCCCCeEEEEeeeC
Q 031554            5 PLDYVEPLGKAGASGFTFHV--E--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLV--EGANPVEMVLVMTVEP   78 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~--e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~--~~~~~~d~vl~m~v~p   78 (157)
                      |...++.+.+.|.|.+++.-  |  ...+-+.++++.++++|+...   ....+.+...++.  +. .++ -|-+++...
T Consensus        62 ~~~~~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~~---g~~~~~~~~~~~~i~~~-~g~-kIg~ig~t~  136 (239)
T smart00854       62 PPENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAHV---GAGRNLAEARKPAIVEV-KGI-KIALLAYTY  136 (239)
T ss_pred             CHHHHHHHHHhCCCEEEeccCcccccchHHHHHHHHHHHHCCCCEe---eCCCChHHhhCcEEEEE-CCE-EEEEEEEEc
Confidence            56689999999999999862  2  111233778888888887642   2222332222221  11 222 244444321


Q ss_pred             ----CCC------Cccc-----chhHHHHHHHHHhhCCCCc-EEEEcCCC---------HhhHHHHHHcCCCEEEEccc
Q 031554           79 ----GFG------GQKF-----MPEMMDKVRSLRNRYPSLD-IEVDGGLG---------PSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        79 ----G~~------gq~~-----~~~~~~ki~~l~~~~~~~~-I~vdGGI~---------~~~i~~~~~~Gad~vV~GSa  132 (157)
                          ++.      +-.+     .+...+.++++|+. .++- +..=.|..         .+-++.+.++|||+|+.|..
T Consensus       137 ~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~  214 (239)
T smart00854      137 GTNNGWAASKDRPGVALLPDLDREKILADIARARKK-ADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHP  214 (239)
T ss_pred             CCCCCcccCCCCCCeeecCcCCHHHHHHHHHHHhcc-CCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCC
Confidence                111      1111     12344557777764 3432 33444443         23455677899999988753

This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=89.35  E-value=6.8  Score=28.65  Aligned_cols=109  Identities=18%  Similarity=0.197  Sum_probs=58.6

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceE--EEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPG--VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~g--l~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      +....++.+.+.|++++++-.-... ....+.++.+++.....|  +.++  ..++...+     .++|.+-+    |. 
T Consensus        13 ~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~--~~~~~a~~-----~g~~~vh~----~~-   80 (196)
T cd00564          13 DLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIN--DRVDLALA-----VGADGVHL----GQ-   80 (196)
T ss_pred             hHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe--ChHHHHHH-----cCCCEEec----Cc-
Confidence            3456788899999999877643322 122345555554322233  3343  44444333     36775522    21 


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      ..  ..   ...+++++.  .+..+.+... +.+.+.+..+.|+|.+.+|.-
T Consensus        81 ~~--~~---~~~~~~~~~--~~~~~g~~~~-t~~~~~~~~~~g~d~i~~~~~  124 (196)
T cd00564          81 DD--LP---VAEARALLG--PDLIIGVSTH-SLEEALRAEELGADYVGFGPV  124 (196)
T ss_pred             cc--CC---HHHHHHHcC--CCCEEEeeCC-CHHHHHHHhhcCCCEEEECCc
Confidence            11  11   222333332  2344444432 567788888899999998754

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PLN02321 2-isopropylmalate synthase

Probab=89.31  E-value=11  Score=33.92  Aligned_cols=97  Identities=21%  Similarity=0.339  Sum_probs=66.0

Q ss_pred             HHHHHHHHHcCCceEEEecCC----CCHHhHHhhHhc--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC---
Q 031554           32 QELVQRIKSKGMRPGVALKPG----TSVEEVYPLVEG--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS---  102 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~----t~~~~~~~~~~~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~---  102 (157)
                      .+.++++|++|.. -+.+.++    ++.+.+.++++.  -.++|.|.+    |.+.|.....+..+.++.+++..++   
T Consensus       213 ~~~V~~Ak~~G~~-~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L----~DTvG~~~P~~v~~li~~l~~~~~~~~~  287 (632)
T PLN02321        213 RDMVKYARSLGCE-DVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNI----PDTVGYTLPSEFGQLIADIKANTPGIEN  287 (632)
T ss_pred             HHHHHHHHHcCCc-eEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEe----cccccCCCHHHHHHHHHHHHHhcCCCCC
Confidence            6678889999874 2333333    566555444431  146888766    6777877777888889999887653   


Q ss_pred             CcEEE----EcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554          103 LDIEV----DGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus       103 ~~I~v----dGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      +.|.+    |-|.-..|.-..+++||+.|  =+.+++
T Consensus       288 v~i~vH~HND~GlAvANslaAv~AGA~~V--d~TinG  322 (632)
T PLN02321        288 VIISTHCQNDLGLSTANTLAGAHAGARQV--EVTING  322 (632)
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHhCCCEE--EEeccc
Confidence            44665    66888888888889999986  344443

>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional

Probab=89.16  E-value=10  Score=33.08  Aligned_cols=121  Identities=15%  Similarity=0.077  Sum_probs=77.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc---------hHHHHHHH---HHHcC-----CceEEEecCCCCH----HhHHhhH
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD---------NWQELVQR---IKSKG-----MRPGVALKPGTSV----EEVYPLV   62 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~---------~~~~~i~~---ir~~g-----~~~gl~l~~~t~~----~~~~~~~   62 (157)
                      .|+..++.-...|+|++...-+.++.         .+++++++   +++..     .-+|+.=. .+..    +.++.+.
T Consensus       103 tpe~~i~~Q~~iGsDI~~~LD~~t~~~~~~~~~~~sv~rT~rwa~~~~~~~~~~~~~l~giVQG-g~~~dLR~~sa~~l~  181 (487)
T PRK13533        103 TNEEILEFQRKIGSDIGVPLDIPTPPDVDYEEAEEELEETLERLEEAAELIQDGDMLWVAPVQG-GTYPDLREESAREAS  181 (487)
T ss_pred             CHHHHHHHHHHhCCCEEeECCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhccCccEEEEecC-CCCHHHHHHHHHHHH
Confidence            58999999999999999887543321         11334443   33321     12344332 3322    3344454


Q ss_pred             hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHHHHcCCCEEE
Q 031554           63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~~~~Gad~vV  128 (157)
                      ++  +.|...+.++.||..... .+...+-|..++... ++.++.+=|-=++.++..++..|+|.|=
T Consensus       182 ~~--~f~gyaIGgl~~~~e~y~-~~~~~~ii~~~~~~Lp~dkPryL~GvG~P~~i~~~V~lGvDlFD  245 (487)
T PRK13533        182 KL--GFDVYPIGAVVPLMERYR-YDDLVDVVLAAKRGLGPGAPVHLFGAGHPMMFALAVALGCDLFD  245 (487)
T ss_pred             hC--CCCEEEEcCcccccccCC-HHHHHHHHHHHHhhCCCCCceEEeCCCCHHHHHHHHHhCCCcee
Confidence            43  578888776666532111 245666677777765 5788888888899999999999999883

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=89.07  E-value=8.6  Score=29.45  Aligned_cols=137  Identities=13%  Similarity=0.192  Sum_probs=83.2

Q ss_pred             ChHHHHHHHHhCCCCEEEEccc---CCcc---hHHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554            4 NPLDYVEPLGKAGASGFTFHVE---ISKD---NWQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e---~~~~---~~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      +..+.++.+.++|+|++|+=.-   ..++   . .++++++|+.- ...=+=+-..+|...++++.+  .++|+|.+   
T Consensus        13 ~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g-~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~--~g~~~i~~---   86 (201)
T PF00834_consen   13 NLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFG-PDIIKAIRKITDLPLDVHLMVENPERYIEEFAE--AGADYITF---   86 (201)
T ss_dssp             GHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B--HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHH--HT-SEEEE---
T ss_pred             HHHHHHHHHHHcCCCEEEEeecccccCCcccCC-HHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHh--cCCCEEEE---
Confidence            4467788889999999998622   1111   2 58899999873 223333456788888888886  37898865   


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccc--cCC----CCHHHHHHHHHHHH
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV--FGA----PEPAHVISLMRKSV  150 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai--~~~----~d~~~~~~~l~~~~  150 (157)
                      |+-..     +...+.++.+|+....+-|++.=+-..+.+..++. -+|.+.+=|--  |+.    +..-+.++++++.+
T Consensus        87 H~E~~-----~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~-~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~  160 (201)
T PF00834_consen   87 HAEAT-----EDPKETIKYIKEAGIKAGIALNPETPVEELEPYLD-QVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLI  160 (201)
T ss_dssp             EGGGT-----TTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC-CSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHH
T ss_pred             cccch-----hCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh-hcCEEEEEEecCCCCcccccHHHHHHHHHHHHHH
Confidence            44211     23445677777765555677777766788887776 68886554321  221    23346666666665


Q ss_pred             HH
Q 031554          151 ED  152 (157)
Q Consensus       151 ~~  152 (157)
                      .+
T Consensus       161 ~~  162 (201)
T PF00834_consen  161 PE  162 (201)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=89.03  E-value=9.9  Score=30.09  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=18.8

Q ss_pred             EEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554          105 IEVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus       105 I~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      +.+=.|- .+.+......|+++.+.|.+
T Consensus       177 ~~v~~G~-d~~~~~~l~~G~~G~i~~~~  203 (281)
T cd00408         177 FAVLSGD-DDLLLPALALGADGAISGAA  203 (281)
T ss_pred             eEEEEcc-hHHHHHHHHcCCCEEEehHH
Confidence            3343444 56666777899999999964

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=88.85  E-value=4.1  Score=31.80  Aligned_cols=87  Identities=16%  Similarity=0.143  Sum_probs=52.7

Q ss_pred             HHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHH----hhCCCCcEE
Q 031554           32 QELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYPSLDIE  106 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~----~~~~~~~I~  106 (157)
                      ..+++.+.++++-+.+-. ++++-.+..+.+.+  .++..+-+=-..         |..++.|++++    +.+|++.|.
T Consensus         6 ~~~~~~l~~~~vi~Vvr~~~~~~a~~~~~al~~--gGi~~iEiT~~t---------p~a~~~i~~l~~~~~~~~p~~~vG   74 (222)
T PRK07114          6 IAVLTAMKATGMVPVFYHADVEVAKKVIKACYD--GGARVFEFTNRG---------DFAHEVFAELVKYAAKELPGMILG   74 (222)
T ss_pred             HHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHH--CCCCEEEEeCCC---------CcHHHHHHHHHHHHHhhCCCeEEe
Confidence            456677777776655543 22222333444443  456655442111         23455555554    345677787


Q ss_pred             EEcCCCHhhHHHHHHcCCCEEEE
Q 031554          107 VDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus       107 vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                      +.-=+|.++++...++||+.+|.
T Consensus        75 aGTVl~~e~a~~a~~aGA~FiVs   97 (222)
T PRK07114         75 VGSIVDAATAALYIQLGANFIVT   97 (222)
T ss_pred             eEeCcCHHHHHHHHHcCCCEEEC
Confidence            77778899999999999998764

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=88.82  E-value=8.6  Score=29.10  Aligned_cols=112  Identities=10%  Similarity=0.051  Sum_probs=64.3

Q ss_pred             HHHHHHHHhCCCCEEEE-----ccc-CCcchHHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            6 LDYVEPLGKAGASGFTF-----HVE-ISKDNWQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~v-----h~e-~~~~~~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      .+.++.+.+.|+|++.+     +.- ..... .+.++.+++.- ....+-+-..++.+.+..+.+  .++|.|+++..  
T Consensus        19 ~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~--~g~d~v~vh~~--   93 (220)
T PRK05581         19 GEEVKAVEAAGADWIHVDVMDGHFVPNLTIG-PPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAK--AGADIITFHVE--   93 (220)
T ss_pred             HHHHHHHHHcCCCEEEEeCccCCcCCCcCcC-HHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHH--cCCCEEEEeec--
Confidence            34567888999999999     321 11113 57888888753 344343333465555555554  47899988532  


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-C-HhhHHHHHHcCCCEEEEcc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-G-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~-~~~i~~~~~~Gad~vV~GS  131 (157)
                          +.  +...+.++.+++.  +..+.+.-+- + .+.++.+ ..++|.+.+++
T Consensus        94 ----~~--~~~~~~~~~~~~~--~~~~g~~~~~~t~~e~~~~~-~~~~d~i~~~~  139 (220)
T PRK05581         94 ----AS--EHIHRLLQLIKSA--GIKAGLVLNPATPLEPLEDV-LDLLDLVLLMS  139 (220)
T ss_pred             ----cc--hhHHHHHHHHHHc--CCEEEEEECCCCCHHHHHHH-HhhCCEEEEEE
Confidence                22  2334456666665  4555444432 2 3445544 34689777765

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=88.79  E-value=4.1  Score=33.34  Aligned_cols=67  Identities=15%  Similarity=0.181  Sum_probs=45.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      .++++.+.++|+|.+++|......       . -+.++.++++--.+.+.-.-=++.+.+.++++. .++|.|.+.
T Consensus       151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~-~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~-~g~DgVmiG  224 (312)
T PRK10550        151 FEIADAVQQAGATELVVHGRTKEDGYRAEHIN-WQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI-TGCDAVMIG  224 (312)
T ss_pred             HHHHHHHHhcCCCEEEECCCCCccCCCCCccc-HHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc-cCCCEEEEc
Confidence            467788899999999999755322       1 356888888632333333333566777887765 689999874

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=88.71  E-value=11  Score=30.09  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=50.9

Q ss_pred             HHHHHHhC--CCCEEEEc-ccCCcchHHHHHHHHHHcCCceEEEec-----CCCC---HHhHHhhHhc--CCCC--CeEE
Q 031554            8 YVEPLGKA--GASGFTFH-VEISKDNWQELVQRIKSKGMRPGVALK-----PGTS---VEEVYPLVEG--ANPV--EMVL   72 (157)
Q Consensus         8 ~i~~~~~~--gad~v~vh-~e~~~~~~~~~i~~ir~~g~~~gl~l~-----~~t~---~~~~~~~~~~--~~~~--d~vl   72 (157)
                      .++.+.++  |+++|.=- .+. ... .+.+..++++|+.+.+...     |.|.   .+.+++.++.  ..++  +-|+
T Consensus        81 v~eaaL~~~~G~~iINsIs~~~-~~~-~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~Ii  158 (261)
T PRK07535         81 AIEAGLKVAKGPPLINSVSAEG-EKL-EVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIY  158 (261)
T ss_pred             HHHHHHHhCCCCCEEEeCCCCC-ccC-HHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEE
Confidence            45566666  88876433 322 223 5777888888887766432     2222   2333333221  1344  2333


Q ss_pred             EEeeeCCCC----CcccchhHHHHHHHHHhhCCCCcEEE
Q 031554           73 VMTVEPGFG----GQKFMPEMMDKVRSLRNRYPSLDIEV  107 (157)
Q Consensus        73 ~m~v~pG~~----gq~~~~~~~~ki~~l~~~~~~~~I~v  107 (157)
                      +   +||++    ++...-+.++.++.+++.+|++++.+
T Consensus       159 l---DPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~  194 (261)
T PRK07535        159 I---DPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTC  194 (261)
T ss_pred             E---eCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEE
Confidence            3   68766    22223345778888888766666543

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=88.70  E-value=11  Score=30.34  Aligned_cols=126  Identities=19%  Similarity=0.179  Sum_probs=82.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHcCCceEEEe----cC----------CCCHHhHHhhHhcC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSKGMRPGVAL----KP----------GTSVEEVYPLVEGA   65 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~g~~~gl~l----~~----------~t~~~~~~~~~~~~   65 (157)
                      ...+..+.++|.+.|.+=.-..+      .+ .++.+.++..|+.+-..+    ..          -|..+.+.++.+- 
T Consensus        82 ~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t-~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~-  159 (276)
T cd00947          82 FELIKRAIRAGFSSVMIDGSHLPFEENVAKT-KEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEE-  159 (276)
T ss_pred             HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHH-
Confidence            35677889999888877643322      13 567777888887653322    11          3567778888865 


Q ss_pred             CCCCeEEEE--eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC--CHhhHHHHHHcCCCEEEEcccccC
Q 031554           66 NPVEMVLVM--TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL--GPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        66 ~~~d~vl~m--~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI--~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      -++|.+.+=  ++| |...+.-..-.+++++++++.. +++++.=||-  ..++++++++.|+.-+=++|.+..
T Consensus       160 TgvD~LAvsiGt~H-G~Y~~~~p~L~~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~  231 (276)
T cd00947         160 TGVDALAVAIGTSH-GAYKGGEPKLDFDRLKEIAERV-NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRL  231 (276)
T ss_pred             HCCCEEEeccCccc-cccCCCCCccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence            478877542  233 2211101123466778887764 6888887764  479999999999999999998753

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	157
1h1y_A	228	The Structure Of The Cytosolic D-Ribulose-5-Phospha		2e-72
3ovp_A	228	Crystal Structure Of Hrpe Length = 228		8e-40
3qc3_A	225	Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epi		1e-33
1tqx_A	227	Crystal Structure Of Pfal009167 A Putative D-Ribulo		6e-31
2fli_A	220	The Crystal Structure Of D-Ribulose 5-Phosphate 3-E		3e-25
3inp_A	246	2.05 Angstrom Resolution Crystal Structure Of D-Rib		8e-24
1tqj_A	230	Crystal Structure Of D-Ribulose 5-Phosphate 3-Epime		2e-23
1rpx_A	230	D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tub		3e-21
3ct7_A	231	Crystal Structure Of D-Allulose 6-Phosphate 3-Epime		6e-19

>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3- Epimerase From Rice Complexed With Sulfate Length = 228

Iteration: 1
 Score =  267 bits (682), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/157 (80%), Positives = 141/157 (89%)
Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNP DYVEPL KAGASGFTFH+E+S+DNWQEL+Q IK+KGMRPGV+L+PGT VEEV+P
Sbjct: 72  MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFP 131
Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVE  NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 132 LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA 191
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
           SAGANCIVAGSS+FGA EP  VIS +RKSVE +Q  S
Sbjct: 192 SAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228

>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe Length = 228

Iteration: 1
 Score =  159 bits (401), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 5/158 (3%)
Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGTSVE + P
Sbjct: 72  MVSKPEQWVKPMAVAGANQYTFHLE-ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 130
Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
               AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PSLDIEVDGG+GP T+ + A
Sbjct: 131 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 187
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
            AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct: 188 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225

>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase (Np_954699) From Homo Sapiens At 2.20 A Resolution Length = 225

Iteration: 1
 Score =  138 bits (347), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 4/154 (2%)
Query: 2   VTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPL 61
           V+ P  +V+P   AGA+ +TFH+E + +N   L++ I+  G + G+A+KPGTSVE + P 
Sbjct: 74  VSKPEQWVKPXAVAGANQYTFHLE-ATENPGALIKDIRENGXKVGLAIKPGTSVEYLAPW 132
Query: 62  VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS 121
              AN ++  LV TVEPGFGGQKF  +   KV  LR ++PSLDIEVDGG+GP T+ + A 
Sbjct: 133 ---ANQIDXALVXTVEPGFGGQKFXEDXXPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAE 189
Query: 122 AGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155
           AGAN IV+GS++  + +P  VI+L+R    +A +
Sbjct: 190 AGANXIVSGSAIXRSEDPRSVINLLRNVCSEAAQ 223

>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose 5-Phosphate 3- Epimerase From P.Falciparum Length = 227

Iteration: 1
 Score =  129 bits (324), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 100/159 (62%), Gaps = 6/159 (3%)
Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQ---RIKSKGMRPGVALKPGTSVEE 57
           MV  P  YV PL K  ++  TFH E   ++ +  +Q    I+   +  G+++KP T V++
Sbjct: 72  MVEYPEKYV-PLLKT-SNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQK 129
Query: 58  VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIA 117
           + P+++  N +  VLVMTVEPGFGGQ FM +MM KV  LR +Y +L+I+VDGGL   T  
Sbjct: 130 LVPILD-TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTE 188
Query: 118 EAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156
            +AS GAN IVAG+S+F A +P +VI  MR SV+    N
Sbjct: 189 ISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYLNN 227

>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate Length = 220

Iteration: 1
 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV +P  YVE   +AGA   T H E S  +    +Q+IK+ GM+ GV + PGT    + P
Sbjct: 69  MVVDPERYVEAFAQAGADIMTIHTE-STRHIHGALQKIKAAGMKAGVVINPGTPATALEP 127
Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPSTI 116
           L++    V+ VL+MTV PGFGGQ F+PE ++KV ++      +  S DIEVDGG+   TI
Sbjct: 128 LLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTI 184
Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
                AGAN  VAGS +F A +    +  +R ++
Sbjct: 185 RACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218

>pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of D-Ribulose-Phosphate 3- Epimerase From Francisella Tularensis Length = 246

Iteration: 1
 Score =  105 bits (263), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 89/156 (57%), Gaps = 9/156 (5%)
Query: 1   MVTNPLD-YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
           ++  P+D  +E   KAGA+   FH E S+ +    +Q IKS G++ G+AL P T ++   
Sbjct: 93  LMVKPVDALIESFAKAGATSIVFHPEASE-HIDRSLQLIKSFGIQAGLALNPATGID-CL 150
Query: 60  PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD----IEVDGGLGPST 115
             VE  + ++ VL+M+V PGFGGQKF+P M+DK + +     S D    +E+DGG+ P  
Sbjct: 151 KYVE--SNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYN 208
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
           IAE A  G N  VAGS++F +      I  MR  + 
Sbjct: 209 IAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELN 244

>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution Length = 230

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 90/155 (58%), Gaps = 10/155 (6%)
Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
           M+  P  YVE   KAGA   + HVE +   +    + +I+  G + G  L P T ++   
Sbjct: 70  MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLD--- 126
Query: 60  PLVEGANPV-EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--LD--IEVDGGLGPS 114
             +E   PV +++L+M+V PGFGGQ F+PE++ K+R+LR       LD  IEVDGGL P+
Sbjct: 127 -FLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPN 185
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
              +   AGAN IVAGS+VF AP  A  I+ +R S
Sbjct: 186 NTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNS 220

>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum Chloroplasts Length = 230

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
           M+  P   V    KAGA   + H E S   +    + +IKS G + GV L PGT +  + 
Sbjct: 76  MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIE 135
Query: 60  PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPST 115
            +++    V++VL+M+V PGFGGQ F+   + K+  LR     R  +  IEVDGG+GP  
Sbjct: 136 YVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKN 192
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
             +   AGAN +VAGS+VFGAP+ A  I  ++ S
Sbjct: 193 AYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTS 226

>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase From Escherichia Coli K-12 Length = 231

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 7/136 (5%)
Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVT P DY+  L +AGA   T H E        L+  I+   M+ G+ L P T VE +  
Sbjct: 65  MVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKY 124
Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL---RNRY-PSLDIEVDGGLGPSTI 116
            +  A+ +    VMTV+PGF GQ F+PEM+DK+  L   R R     +IEVDG    +T 
Sbjct: 125 YIHKADKIT---VMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATY 181
Query: 117 AEAASAGANCIVAGSS 132
            +  +AGA+  + G+S
Sbjct: 182 EKLMAAGADVFIVGTS 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	6e-84
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	9e-76
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	1e-72
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	1e-55
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	2e-55
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	5e-55
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	2e-54
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	6e-54
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	2e-46
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	5e-25
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	3e-24
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	2e-23
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	1e-22
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	2e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Length = 228

 Score =  245 bits (627), Expect = 6e-84
 Identities = 126/157 (80%), Positives = 141/157 (89%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNP DYVEPL KAGASGFTFH+E+S+DNWQEL+Q IK+KGMRPGV+L+PGT VEEV+P
Sbjct: 72  MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFP 131

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVE  NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 132 LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA 191

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
           SAGANCIVAGSS+FGA EP  VIS +RKSVE +Q  S
Sbjct: 192 SAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A Length = 228

 Score =  224 bits (573), Expect = 9e-76
 Identities = 77/155 (49%), Positives = 110/155 (70%), Gaps = 4/155 (2%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV+ P  +V+P+  AGA+ +TFH+E + +N   L++ I+  GM+ G+A+KPGTSVE + P
Sbjct: 72  MVSKPEQWVKPMAVAGANQYTFHLEAT-ENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 130

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
                  ++M LVMTVEPGFGGQKFM +MM KV  LR ++PSLDIEVDGG+GP T+ + A
Sbjct: 131 WAN---QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 187

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155
            AGAN IV+GS++  + +P  VI+L+R    +A +
Sbjct: 188 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQ 222

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Length = 227

 Score =  216 bits (553), Expect = 1e-72
 Identities = 69/159 (43%), Positives = 98/159 (61%), Gaps = 6/159 (3%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQ---ELVQRIKSKGMRPGVALKPGTSVEE 57
           MV  P  YV  L  +     TFH E   ++ +   +L + I+   +  G+++KP T V++
Sbjct: 72  MVEYPEKYVPLLKTSNQ--LTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQK 129

Query: 58  VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIA 117
           + P+++  N +  VLVMTVEPGFGGQ FM +MM KV  LR +Y +L+I+VDGGL   T  
Sbjct: 130 LVPILD-TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTE 188

Query: 118 EAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156
            +AS GAN IVAG+S+F A +P +VI  MR SV+    N
Sbjct: 189 ISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYLNN 227

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Length = 220

 Score =  173 bits (441), Expect = 1e-55
 Identities = 62/155 (40%), Positives = 89/155 (57%), Gaps = 8/155 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV +P  YVE   +AGA   T H E +  +    +Q+IK+ GM+ GV + PGT    + P
Sbjct: 69  MVVDPERYVEAFAQAGADIMTIHTEST-RHIHGALQKIKAAGMKAGVVINPGTPATALEP 127

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPSTI 116
           L++    V+ VL+MTV PGFGGQ F+PE ++KV ++      +  S DIEVDGG+   TI
Sbjct: 128 LLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTI 184

Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
                AGAN  VAGS +F A +    +  +R ++ 
Sbjct: 185 RACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Length = 246

 Score =  173 bits (440), Expect = 2e-55
 Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 8/155 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV      +E   KAGA+   FH E S ++    +Q IKS G++ G+AL P T ++ +  
Sbjct: 94  MVKPVDALIESFAKAGATSIVFHPEAS-EHIDRSLQLIKSFGIQAGLALNPATGIDCLKY 152

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTI 116
           +      ++ VL+M+V PGFGGQKF+P M+DK + +          + +E+DGG+ P  I
Sbjct: 153 VESN---IDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNI 209

Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
           AE A  G N  VAGS++F +      I  MR  + 
Sbjct: 210 AEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELN 244

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Length = 230

 Score =  171 bits (437), Expect = 5e-55
 Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 8/160 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
           M+  P  YVE   KAGA   + HVE  +  +    + +I+  G + G  L P T ++ + 
Sbjct: 70  MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLE 129

Query: 60  PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPST 115
            ++      +++L+M+V PGFGGQ F+PE++ K+R+LR     R     IEVDGGL P+ 
Sbjct: 130 YVLPV---CDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNN 186

Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155
             +   AGAN IVAGS+VF AP  A  I+ +R S     +
Sbjct: 187 TWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPEPQ 226

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Length = 230

 Score =  170 bits (434), Expect = 2e-54
 Identities = 60/156 (38%), Positives = 86/156 (55%), Gaps = 8/156 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
           M+  P   V    KAGA   + H E S   +    + +IKS G + GV L PGT +  + 
Sbjct: 76  MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIE 135

Query: 60  PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPST 115
            +++    V++VL+M+V PGFGGQ F+   + K+  LR     R  +  IEVDGG+GP  
Sbjct: 136 YVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKN 192

Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
             +   AGAN +VAGS+VFGAP+ A  I  ++ S  
Sbjct: 193 AYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKR 228

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Length = 231

 Score =  169 bits (430), Expect = 6e-54
 Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVT P DY+  L +AGA   T H E        L+  I+   M+ G+ L P T VE +  
Sbjct: 65  MVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKY 124

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPSTI 116
            +      + + VMTV+PGF GQ F+PEM+DK+  L+          +IEVDG    +T 
Sbjct: 125 YIH---KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATY 181

Query: 117 AEAASAGANCIVAGSS-VFGAPEP-AHVISLMRKSVEDAQK 155
            +  +AGA+  + G+S +F   E       +M   +  A+ 
Sbjct: 182 EKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILAAKS 222

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Length = 237

 Score =  150 bits (380), Expect = 2e-46
 Identities = 30/165 (18%), Positives = 69/165 (41%), Gaps = 20/165 (12%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---------GMRPGVALKP 51
           MV N L+  + +   GA+  T  +E    ++   ++ +  +          +  G  L P
Sbjct: 77  MVRNQLEVAKAVVANGANLVTLQLEQY-HDFALTIEWLAKQKTTYANQVYPVLIGACLCP 135

Query: 52  GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYPSLDIEV 107
            T + E+ P ++    ++++ ++T++P  G +     ++D+V  +     NR     I +
Sbjct: 136 ETPISELEPYLDQ---IDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINI 192

Query: 108 DGGLGPSTIAEAASAGANC--IVAGSSVFGAPEPAHVISLMRKSV 150
           DG +                 +V+GS++F   E    + + + S+
Sbjct: 193 DGSMTLELAKYFKQGTHQIDWLVSGSALFSG-ELKTNLKVWKSSI 236

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218

 Score = 94.6 bits (235), Expect = 5e-25
 Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 3/138 (2%)

Query: 5   PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEG 64
                    +AGA   T              +          + +    ++++    V+ 
Sbjct: 72  GAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVD- 130

Query: 65  ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA 124
               + +   + +    G  +  + +DK+R L      +++ + GG+ P  I        
Sbjct: 131 LGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSAL--GIELSITGGIVPEDIYLFEGIKT 188

Query: 125 NCIVAGSSVFGAPEPAHV 142
              +AG ++ GA      
Sbjct: 189 KTFIAGRALAGAEGQQTA 206

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221

 Score = 92.7 bits (230), Expect = 3e-24
 Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 6/151 (3%)

Query: 4   NPLDYVEPLGKAGASGFTFHVEISK---DNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
                 +     GA   T     +       ++ ++ I        V L    + ++   
Sbjct: 70  AGGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQ 129

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
            ++ A   + +   + +    G+ +  + ++KV+ L        + V GGL   T+    
Sbjct: 130 WLD-AGISQAIYHQSRDALLAGETWGEKDLNKVKKLIE--MGFRVSVTGGLSVDTLKLFE 186

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
                  +AG  +  A  PA      +  ++
Sbjct: 187 GVDVFTFIAGRGITEAKNPAGAARAFKDEIK 217

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Length = 216

 Score = 90.8 bits (225), Expect = 2e-23
 Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 3/139 (2%)

Query: 14  KAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLV 73
           +A A   T       +  +  +   K       + L    + E+     + A   ++V  
Sbjct: 78  EANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRD-AGIGQVVYH 136

Query: 74  MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV 133
            + +    G  +    +  ++ L +      + V GGL    +        +  +AG S+
Sbjct: 137 RSRDAQAAGVAWGEADITAIKRLSD--MGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSI 194

Query: 134 FGAPEPAHVISLMRKSVED 152
             A  P       ++S+ +
Sbjct: 195 RDAASPVEAARQFKRSIAE 213

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Length = 207

 Score = 88.1 bits (218), Expect = 1e-22
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 5/150 (3%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
            +       +   KAGA   T             V+  ++      V L           
Sbjct: 62  TMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQ 121

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
            V           + +  G   Q      ++ + +   +   +   V GG+  +TI    
Sbjct: 122 EVRAL----GAKFVEMHAGLDEQAKPGFDLNGLLAAGEK-ARVPFSVAGGVKVATIPAVQ 176

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
            AGA   VAG +++GA +PA     +R ++
Sbjct: 177 KAGAEVAVAGGAIYGAADPAAAAKELRAAI 206

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} Length = 211

 Score = 87.6 bits (217), Expect = 2e-22
 Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 5/155 (3%)

Query: 1   MVTNPLDYV-EPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
            + +   +  + L  AGA   T          Q  ++  K  G +  V +     +    
Sbjct: 61  KIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARV 120

Query: 60  PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA 119
            L+E A    + +      G   Q    + +D + ++        I V GG+   T+ + 
Sbjct: 121 RLLEEAGADMLAV----HTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDY 176

Query: 120 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154
           A  G + ++ GS++  A +PA     + + +    
Sbjct: 177 ALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH 211

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 16/102 (15%)

Query: 22  FHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81
           F  E+ + N++ L+  IK++  +P  ++     +E+   L    N  ++     V     
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIEQRDRL---YNDNQVFAKYNVS---- 132

Query: 82  GQKFMPEMMDKVRS-LRNRYPSLDIEVDG--GLGPSTIAEAA 120
                 +   K+R  L    P+ ++ +DG  G G + +A   
Sbjct: 133 ----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	100.0
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	100.0
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	100.0
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	100.0
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	100.0
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	100.0
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	100.0
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	99.97
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	99.97
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	99.95
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	99.93
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	99.93
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	99.93
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	99.92
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	99.92
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	99.91
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	99.91
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	99.91
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	99.89
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	99.86
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	99.82
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	99.81
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	99.76
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	99.75
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.75
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.74
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	99.72
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	99.71
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	99.7
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	99.67
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	99.66
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	99.66
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	99.64
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	99.64
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	99.63
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	99.61
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	99.6
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	99.6
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	99.58
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	99.58
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	99.52
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	99.48
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	99.48
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	99.47
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	99.46
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	99.42
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	99.41
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	99.4
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	99.38
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	99.37
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	99.32
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	99.32
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	99.31
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	99.31
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	99.27
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	99.26
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	99.26
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	99.24
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	99.22
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	99.22
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	99.21
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	99.2
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	99.2
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	99.19
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	99.18
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	99.16
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	99.15
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	99.14
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	99.06
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	99.05
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	99.02
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	99.02
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	98.99
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	98.99
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	98.98
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	98.96
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	98.96
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	98.93
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	98.92
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	98.92
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	98.9
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	98.87
1viz_A	240	PCRB protein homolog; structural genomics, unknown	98.86
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	98.85
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	98.85
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	98.85
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	98.84
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	98.82
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	98.79
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	98.76
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	98.76
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	98.75
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.73
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	98.73
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	98.72
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	98.7
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	98.68
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	98.67
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	98.66
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	98.65
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	98.62
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	98.61
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	98.57
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.55
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	98.5
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	98.46
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	98.45
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	98.43
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	98.43
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.42
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	98.41
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.39
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	98.38
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	98.36
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	98.36
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	98.35
1v5x_A	203	PRA isomerase, phosphoribosylanthranilate isomeras	98.34
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	98.34
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	98.33
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.33
1nsj_A	205	PRAI, phosphoribosyl anthranilate isomerase; therm	98.33
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	98.32
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	98.31
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	98.27
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.25
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	98.24
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	98.23
3qw3_A	255	Orotidine-5-phosphate decarboxylase/orotate phosph	98.23
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	98.22
2fds_A	352	Orotidine-monophosphate-decarboxylase; TIM barrel,	98.21
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	98.21
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	98.21
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	98.2
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	98.19
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	98.19
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	98.18
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	98.17
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	98.16
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	98.16
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	98.13
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	98.12
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.12
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	98.1
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	98.1
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	98.09
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	98.09
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	98.09
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	98.07
2ffc_A	353	Orotidine 5-monophosphate decarboxylase; PV-PF10_0	98.05
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	98.03
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	98.01
3qw4_B	453	UMP synthase; N-terminal orotidine monophosphate d	97.98
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	97.98
3eww_A	260	Ompdecase, orotidine-5'-phosphate decarboxylase; T	97.97
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	97.97
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	97.96
1yya_A	250	Triosephosphate isomerase; riken structural genomi	97.94
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	97.94
1o5x_A	248	TIM, triosephosphate isomerase; 2- phosphoglycerat	97.93
2jgq_A	233	Triosephosphate isomerase; glycolysis, pentose shu	97.91
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	97.91
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	97.87
2j27_A	250	Triosephosphate isomerase glycosomal; TIM, 2PG, LO	97.86
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.86
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	97.86
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.85
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	97.85
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	97.83
3m9y_A	254	Triosephosphate isomerase; TIM barrel, glycolysis,	97.82
2btm_A	252	TIM, protein (triosephosphate isomerase); thermoph	97.81
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.81
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	97.81
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	97.78
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	97.78
1aw2_A	256	Triosephosphate isomerase; psychrophilic, vibrio m	97.78
2yc6_A	257	Triosephosphate isomerase; glycolysis; HET: PGA; 1	97.75
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	97.74
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	97.73
1tre_A	255	Triosephosphate isomerase; intramolecular oxidored	97.72
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.72
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	97.67
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	97.63
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	97.63
1b9b_A	255	TIM, protein (triosephosphate isomerase); thermoph	97.63
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	97.62
3gdm_A	267	Orotidine 5'-phosphate decarboxylase; orotidine 5'	97.6
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	97.59
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	97.53
3gk0_A	278	PNP synthase, pyridoxine 5'-phosphate synthase; de	97.48
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	97.46
2vxn_A	251	Triosephosphate isomerase; fatty acid biosynthesis	97.46
3g3d_A	312	UMP synthase, uridine 5'-monophosphate synthase; C	97.46
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	97.45
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	97.41
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	97.41
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.37
1mo0_A	275	TIM, triosephosphate isomerase; structural genomic	97.37
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	97.37
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	97.36
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	97.36
3n3m_A	342	Orotidine 5'-phosphate decarboxylase; P. falciparu	97.34
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	97.34
1m5w_A	243	Pyridoxal phosphate biosynthetic protein PDXJ; TIM	97.33
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.33
3krs_A	271	Triosephosphate isomerase; ssgcid, SBRI, emerald b	97.3
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	97.29
3s6d_A	310	Putative triosephosphate isomerase; seattle struct	97.29
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	97.28
3qst_A	255	Triosephosphate isomerase, putative; TIM barrel; 1	97.26
2i9e_A	259	Triosephosphate isomerase; 2.00A {Tenebrio molitor	97.26
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	97.24
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	97.21
1r2r_A	248	TIM, triosephosphate isomerase; closed loop confor	97.21
3gk0_A	278	PNP synthase, pyridoxine 5'-phosphate synthase; de	97.15
2v5b_A	244	Triosephosphate isomerase; TIM, unfolding, monotct	97.13
1ney_A	247	TIM, triosephosphate isomerase; yeast, DHAP, dihyd	97.11
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	97.11
2yxb_A	161	Coenzyme B12-dependent mutase; alpha/beta, structu	97.1
3ble_A	337	Citramalate synthase from leptospira interrogans;	97.1
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	97.08
1m6j_A	261	TIM, TPI, triosephosphate isomerase; asymmetry, mo	97.08
4g1k_A	272	Triosephosphate isomerase; structural genomics, se	97.07
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	97.05
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	97.05
1m5w_A	243	Pyridoxal phosphate biosynthetic protein PDXJ; TIM	97.03
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.01
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	97.0
3ta6_A	267	Triosephosphate isomerase; HET: FLC; 1.41A {Mycoba	96.99
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	96.97
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	96.94
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	96.91
3oa3_A	288	Aldolase; structural genomics, seattle structural	96.9
3kxq_A	275	Triosephosphate isomerase; ssgcid, NIH, niaid, SBR	96.9
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	96.89
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	96.84
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.74
3th6_A	249	Triosephosphate isomerase; alpha/beta barrel, embr	96.72
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	96.71
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	96.71
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.67
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	96.61
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.59
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	96.57
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	96.56
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.5
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	96.43
3o6c_A	260	PNP synthase, pyridoxine 5'-phosphate synthase; st	96.32
2i1o_A	398	Nicotinate phosphoribosyltransferase; ZIN ION, zin	96.28
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	96.27
1dxe_A	256	2-dehydro-3-deoxy-galactarate aldolase; class II a	96.2
2oz8_A	389	MLL7089 protein; structural genomics, unknown func	96.19
2ztj_A	382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	96.18
3qz6_A	261	HPCH/HPAI aldolase; structural genomics, PSI-biolo	96.13
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	96.13
3dxi_A	320	Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX	96.09
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	96.01
1ccw_A	137	Protein (glutamate mutase); coenzyme B12, radical	95.91
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	95.85
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	95.81
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	95.81
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	95.8
2og9_A	393	Mandelate racemase/muconate lactonizing enzyme; NY	95.73
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	95.71
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	95.71
3o6c_A	260	PNP synthase, pyridoxine 5'-phosphate synthase; st	95.62
2v5j_A	287	2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l	95.61
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	95.53
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	95.51
3jte_A	143	Response regulator receiver protein; structural ge	95.5
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	95.43
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	95.42
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	95.39
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	95.39
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	95.37
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	95.31
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	95.2
2vws_A	267	YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher	95.18
3stp_A	412	Galactonate dehydratase, putative; PSI biology, st	95.15
1x7f_A	385	Outer surface protein; structural genomics, unknow	95.14
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	95.1
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	95.09
1y80_A	210	Predicted cobalamin binding protein; corrinoid, fa	95.08
1mdl_A	359	Mandelate racemase; isomerase, mandelate pathway,	95.01
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	94.99
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	94.99
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	94.99
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	94.96
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	94.94
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	94.91
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	94.91
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	94.9
2qgy_A	391	Enolase from the environmental genome shotgun sequ	94.88
3ewb_X	293	2-isopropylmalate synthase; LEUA, structural genom	94.84
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	94.84
1req_A	727	Methylmalonyl-COA mutase; isomerase, intramolecula	94.83
2pp0_A	398	L-talarate/galactarate dehydratase; enolase superf	94.83
1r30_A	369	Biotin synthase; SAM radical protein, TIM barrel,	94.8
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	94.78
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	94.78
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	94.77
2ox4_A	403	Putative mandelate racemase; enolase, dehydratase,	94.75
1nu5_A	370	Chloromuconate cycloisomerase; enzyme, dehalogenat	94.74
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	94.72
2i2x_B	258	MTAC, methyltransferase 1; TIM barrel and helix bu	94.72
2gdq_A	382	YITF; mandelate racemase/muconate lactonizing enzy	94.7
3ezx_A	215	MMCP 1, monomethylamine corrinoid protein 1; N ter	94.67
3dip_A	410	Enolase; structural genomics, isomerase, PSI-2, pr	94.65
1a3w_A	500	Pyruvate kinase; allosteric regulation, tranferase	94.58
1tzz_A	392	Hypothetical protein L1841; structural genomics, m	94.56
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	94.55
4dxk_A	400	Mandelate racemase / muconate lactonizing enzyme p	94.54
3lte_A	132	Response regulator; structural genomics, PSI, prot	94.51
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	94.51
2qde_A	397	Mandelate racemase/muconate lactonizing enzyme FA	94.5
2qq6_A	410	Mandelate racemase/muconate lactonizing enzyme- li	94.38
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	94.36
1sjd_A	368	N-acylamino acid racemase; lyase, isomerase; HET:	94.33
2xij_A	762	Methylmalonyl-COA mutase, mitochondrial; isomerase	94.3
2p8b_A	369	Mandelate racemase/muconate lactonizing enzyme fam	94.29
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	94.28
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	94.23
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	94.18
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	94.18
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	94.13
3jva_A	354	Dipeptide epimerase; enolase superfamily, isomeras	94.13
3rqi_A	184	Response regulator protein; structural genomics, s	94.11
3f6p_A	120	Transcriptional regulatory protein YYCF; unphospho	94.1
2hxt_A	441	L-fuconate dehydratase; enolase superfamily, D-ery	94.09
3hv2_A	153	Response regulator/HD domain protein; PSI-2, NYSGX	94.08
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	94.08
3hdg_A	137	Uncharacterized protein; two-component sensor acti	94.07
4dwd_A	393	Mandelate racemase/muconate lactonizing enzyme, C	94.02
2ps2_A	371	Putative mandelate racemase/muconate lactonizing e	94.01
1r0m_A	375	N-acylamino acid racemase; isomerase; 1.30A {Deino	93.9
2hzg_A	401	Mandelate racemase/muconate lactonizing enzyme/EN	93.89
2poz_A	392	Putative dehydratase; octamer, structural genomics	93.88
3iix_A	348	Biotin synthetase, putative; adoMet radical, SAM r	93.87
3apt_A	310	Methylenetetrahydrofolate reductase; TIM barrel, o	93.83
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	93.79
2gl5_A	410	Putative dehydratase protein; structural genomics,	93.79
1tkk_A	366	Similar to chloromuconate cycloisomerase; epimeras	93.78
3bjs_A	428	Mandelate racemase/muconate lactonizing enzyme; en	93.77
3sy1_A	245	UPF0001 protein YGGS; engineered protein, structur	93.76
2wvv_A	450	Alpha-L-fucosidase; alpha-L-fucose, hydrolase, gly	93.76
3ues_A	478	Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr	93.68
3f6c_A	134	Positive transcription regulator EVGA; structural	93.68
3ivs_A	423	Homocitrate synthase, mitochondrial; TIM barrel, m	93.67
2qdd_A	378	Mandelate racemase/muconate lactonizing enzyme; en	93.64
2zc8_A	369	N-acylamino acid racemase; octamer, TIM beta/alpha	93.56
3r0j_A	250	Possible two component system response transcript	93.56
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	93.47
3sjn_A	374	Mandelate racemase/muconate lactonizing protein; e	93.45
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	93.42
2ayx_A	254	Sensor kinase protein RCSC; two independent struct	93.41
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	93.39
3p3b_A	392	Mandelate racemase/muconate lactonizing protein; e	93.38
3gl9_A	122	Response regulator; beta-sheet, surrounded by alph	93.37
2i14_A	395	Nicotinate-nucleotide pyrophosphorylase; ligand bi	93.34
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	93.33
2p0o_A	372	Hypothetical protein DUF871; structural genomics,	93.32
2o56_A	407	Putative mandelate racemase; dehydratase, structur	93.27
3cfy_A	137	Putative LUXO repressor protein; structural genomi	93.23
2qkf_A	280	3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;	93.18
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	93.14
3ozy_A	389	Putative mandelate racemase; beta-alpha barrel, en	93.14
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	93.11
3hdv_A	136	Response regulator; PSI-II, structural genomics, P	93.09
3eyp_A	469	Putative alpha-L-fucosidase; structural genomics,	92.92
3t7v_A	350	Methylornithine synthase PYLB; TIM-barrel fold, mu	92.81
3snk_A	135	Response regulator CHEY-like protein; P-loop conta	92.74
2zay_A	147	Response regulator receiver protein; structural ge	92.74
3nhm_A	133	Response regulator; protein structure initiative I	92.73
3dg3_A	367	Muconate cycloisomerase; muconate lactonizing enzy	92.72
3kto_A	136	Response regulator receiver protein; PSI-II,struct	92.67
3tj4_A	372	Mandelate racemase; enolase, dehydratase, enzyme f	92.65
3grc_A	140	Sensor protein, kinase; protein structure initiati	92.55
2zxd_A	455	Alpha-L-fucosidase, putative; TIM barrel, hydrolas	92.55
3rcy_A	433	Mandelate racemase/muconate lactonizing enzyme-LI	92.42
3crn_A	132	Response regulator receiver domain protein, CHEY-;	92.38
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	92.36
3i4k_A	383	Muconate lactonizing enzyme; structural genomics,	92.31
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	92.27
1tmy_A	120	CHEY protein, TMY; chemotaxis, phosphoryl transfer	92.26
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	92.23
1o60_A	292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	92.23
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	92.21
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	92.21
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	92.12
2qxy_A	142	Response regulator; regulation of transcription, N	92.12
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	92.01
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	91.85
1kgs_A	225	DRRD, DNA binding response regulator D; DNA-bindin	91.82
4dad_A	146	Putative pilus assembly-related protein; response	91.79
4e5t_A	404	Mandelate racemase / muconate lactonizing enzyme,	91.79
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	91.79
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	91.78
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	91.67
2qzj_A	136	Two-component response regulator; 11017X, PSI-II,	91.64
3kcn_A	151	Adenylate cyclase homolog; SGX, PSI 2, structural	91.58
3ddm_A	392	Putative mandelate racemase/muconate lactonizing e	91.57
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	91.5
3mkc_A	394	Racemase; metabolic process, PSI2, NYSGXRC, struct	91.48
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	91.46
3mqt_A	394	Mandelate racemase/muconate lactonizing protein; P	91.44
3cnb_A	143	DNA-binding response regulator, MERR family; signa	91.43
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	91.34
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	91.33
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	91.28
3r0u_A	379	Enzyme of enolase superfamily; structural genomics	91.25
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	91.25
3toy_A	383	Mandelate racemase/muconate lactonizing enzyme FA	91.2
3luf_A	259	Two-component system response regulator/ggdef doma	91.16
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	91.01
1srr_A	124	SPO0F, sporulation response regulatory protein; as	90.88
2pl1_A	121	Transcriptional regulatory protein PHOP; CHEY-like	90.87
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	90.7
2pln_A	137	HP1043, response regulator; signaling protein; 1.8	90.65
3vcn_A	425	Mannonate dehydratase; enolase, magnesium binding	90.59
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	90.57
1mvo_A	136	PHOP response regulator; phosphate regulon, transc	90.46
4e4u_A	412	Mandalate racemase/muconate lactonizing enzyme; ma	90.43
1izc_A	339	Macrophomate synthase intermolecular diels-aldera;	90.4
3eez_A	378	Putative mandelate racemase/muconate lactonizing e	90.36
3i6e_A	385	Muconate cycloisomerase I; structural genomics, NY	90.33
2xz9_A	324	Phosphoenolpyruvate-protein kinase (PTS system EI	90.33
3i42_A	127	Response regulator receiver domain protein (CHEY-	90.31
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	90.3
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	90.3
3gt7_A	154	Sensor protein; structural genomics, signal receiv	90.28
1k66_A	149	Phytochrome response regulator RCPB; CHEY homologu	90.28
3qtg_A	461	Pyruvate kinase, PK; TIM barrel, glycolysis, trans	90.21
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	90.2
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	90.12
3eul_A	152	Possible nitrate/nitrite response transcriptional	90.09
3b2n_A	133	Uncharacterized protein Q99UF4; structural genomic	90.08
3cg4_A	142	Response regulator receiver domain protein (CHEY-;	90.04
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	89.96
2hwg_A	575	Phosphoenolpyruvate-protein phosphotransferase; en	89.89
2e28_A	587	Pyruvate kinase, PK; allosteric, transferase; 2.40	89.77
3ugv_A	390	Enolase; enzyme function initiative, EFI, lyase; 2	89.68
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	89.55
3v3w_A	424	Starvation sensing protein RSPA; enolase, enzyme f	89.55
3t6k_A	136	Response regulator receiver; flavodoxin-like, stru	89.54
3ilh_A	146	Two component response regulator; NYSGXRC, PSI-II,	89.53
3t6c_A	440	RSPA, putative MAND family dehydratase; enolase, m	89.33
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	89.27
3cu5_A	141	Two component transcriptional regulator, ARAC FAM;	89.2
3gd6_A	391	Muconate cycloisomerase; structural genomics, NYSG	89.19
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	89.19
3my9_A	377	Muconate cycloisomerase; structural genomics, PSI-	89.14
3mwc_A	400	Mandelate racemase/muconate lactonizing protein; e	89.12
3r79_A	244	Uncharacterized protein; PSI-biology, structural g	89.11
2fyw_A	267	Conserved hypothetical protein; structural genomic	88.92
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	88.9
2gkg_A	127	Response regulator homolog; social motility, recei	88.84
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	88.8
1wuf_A	393	Hypothetical protein LIN2664; structural genomics,	88.73
3q45_A	368	Mandelate racemase/muconate lactonizing enzyme FA	88.71
3m6m_D	143	Sensory/regulatory protein RPFC; RPFF, REC, enoyl-	88.55
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	88.54
3h5i_A	140	Response regulator/sensory box protein/ggdef domai	88.42
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	88.33
1ur4_A	399	Galactanase; hydrolase, beta-1, glycoside hydrolas	88.31
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	88.26
3tji_A	422	Mandelate racemase/muconate lactonizing enzyme, N	88.26
3gr4_A	550	Pyruvate kinase isozymes M1/M2; activator, acetyla	88.25
3fst_A	304	5,10-methylenetetrahydrofolate reductase; TIM barr	88.24
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	88.19
1chr_A	370	Chloromuconate cycloisomerase; 3.00A {Ralstonia eu	88.13
2f7f_A	494	Nicotinate phosphoribosyltransferase, putative; st	88.1
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	88.01
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	87.91
3ro6_B	356	Putative chloromuconate cycloisomerase; TIM barrel	87.89
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	87.8
3lua_A	140	Response regulator receiver protein; two-component	87.8
3cz5_A	153	Two-component response regulator, LUXR family; str	87.75
4drs_A	526	Pyruvate kinase; glycolysis, allosteric EN transfe	87.74
3bul_A	579	Methionine synthase; transferase, reactivation con	87.64
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	87.6
1ys7_A	233	Transcriptional regulatory protein PRRA; response	87.59
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	87.57
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	87.56
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	87.51
3t05_A	606	Pyruvate kinase, PK; tetramer, glycolysis, transfe	87.43
3mm4_A	206	Histidine kinase homolog; receiver domain, CKI1, c	87.43
3heb_A	152	Response regulator receiver domain protein (CHEY);	87.4
3q9s_A	249	DNA-binding response regulator; DNA binding protei	87.32
3sbf_A	401	Mandelate racemase / muconate lactonizing enzyme;	87.31
3r4e_A	418	Mandelate racemase/muconate lactonizing enzyme; en	87.27
2r25_B	133	Osmosensing histidine protein kinase SLN1; alpha5-	87.24
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	87.24
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	87.22
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	87.15
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	87.12
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	87.11
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	86.98
1a04_A	215	Nitrate/nitrite response regulator protein NARL; s	86.95
3ik4_A	365	Mandelate racemase/muconate lactonizing protein; s	86.83
3c8f_A	245	Pyruvate formate-lyase 1-activating enzyme; adoMet	86.76
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	86.63

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=100.00  E-value=3.5e-43  Score=275.24  Aligned_cols=148  Identities=38%  Similarity=0.639  Sum_probs=139.5

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      |+.||++|++.|+++|||++|||.|+.+++ .++++.+|++|+++|+++||.||++.+++++   +.+|+|++|+|+|||
T Consensus        94 mv~~p~~~i~~~~~aGAd~itvH~Ea~~~~-~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l---~~vD~VlvMsV~PGf  169 (246)
T 3inp_A           94 MVKPVDALIESFAKAGATSIVFHPEASEHI-DRSLQLIKSFGIQAGLALNPATGIDCLKYVE---SNIDRVLIMSVNPGF  169 (246)
T ss_dssp             ECSSCHHHHHHHHHHTCSEEEECGGGCSCH-HHHHHHHHTTTSEEEEEECTTCCSGGGTTTG---GGCSEEEEECSCTTC
T ss_pred             eeCCHHHHHHHHHHcCCCEEEEccccchhH-HHHHHHHHHcCCeEEEEecCCCCHHHHHHHH---hcCCEEEEeeecCCC
Confidence            789999999999999999999999999887 9999999999999999999999999999999   789999999999999


Q ss_pred             CCcccchhHHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +||+|.+..++||+++|++    .++++|+||||||++|++++.++|||++|+||+||+++||.+++++|++.+.+
T Consensus       170 gGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~~~i~~  245 (246)
T 3inp_A          170 GGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELNK  245 (246)
T ss_dssp             --CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred             CCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999986    35799999999999999999999999999999999999999999999987753

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=100.00  E-value=3.5e-42  Score=267.29  Aligned_cols=150  Identities=51%  Similarity=0.906  Sum_probs=144.5

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      |+.||.+|++.++++|||+||||.|+.++. .++++.+|++|+++|++++|+||++.+++++   +.+|+|++|+++|||
T Consensus        72 mv~~p~~~i~~~~~aGad~itvH~Ea~~~~-~~~i~~i~~~G~k~gval~p~t~~e~l~~~l---~~~D~Vl~msv~pGf  147 (228)
T 3ovp_A           72 MVSKPEQWVKPMAVAGANQYTFHLEATENP-GALIKDIRENGMKVGLAIKPGTSVEYLAPWA---NQIDMALVMTVEPGF  147 (228)
T ss_dssp             ECSCGGGGHHHHHHHTCSEEEEEGGGCSCH-HHHHHHHHHTTCEEEEEECTTSCGGGTGGGG---GGCSEEEEESSCTTT
T ss_pred             EeCCHHHHHHHHHHcCCCEEEEccCCchhH-HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHh---ccCCeEEEeeecCCC
Confidence            789999999999999999999999998877 9999999999999999999999999999999   789999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +||+|.+..++||+++|+..++++|+||||||++|++++.++|||++|+||+||+++||.+++++|++.++++.
T Consensus       148 ~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~~~~~  221 (228)
T 3ovp_A          148 GGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAA  221 (228)
T ss_dssp             CSCCCCGGGHHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999998889999999999999999999999999999999999999999999999888654

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=100.00  E-value=1.5e-41  Score=264.18  Aligned_cols=148  Identities=35%  Similarity=0.594  Sum_probs=140.9

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccC-CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      |+.||++|++.|+++|||++|||.|+ .+++ .++++.+|++|+++|+++||.||++.+++++   +.+|+|++|+++||
T Consensus        65 mv~dp~~~i~~~~~aGAd~itvh~Ea~~~~~-~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l---~~~D~VlvmsV~pG  140 (231)
T 3ctl_A           65 MVTRPQDYIAQLARAGADFITLHPETINGQA-FRLIDEIRRHDMKVGLILNPETPVEAMKYYI---HKADKITVMTVDPG  140 (231)
T ss_dssp             ESSCGGGTHHHHHHHTCSEEEECGGGCTTTH-HHHHHHHHHTTCEEEEEECTTCCGGGGTTTG---GGCSEEEEESSCTT
T ss_pred             EecCHHHHHHHHHHcCCCEEEECcccCCccH-HHHHHHHHHcCCeEEEEEECCCcHHHHHHHH---hcCCEEEEeeeccC
Confidence            89999999999999999999999999 8776 9999999999999999999999999999999   88999999999999


Q ss_pred             CCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEc-ccccCCCC-HHHHHHHHHHHHHH
Q 031554           80 FGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAG-SSVFGAPE-PAHVISLMRKSVED  152 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G-Sai~~~~d-~~~~~~~l~~~~~~  152 (157)
                      |+||+|.+..++||+++|++.    ++++|+||||||.+|++++.++|||++|+| |+||+++| |.+++++|++.++.
T Consensus       141 fggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G~saif~~~d~~~~~~~~l~~~~~~  219 (231)
T 3ctl_A          141 FAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILA  219 (231)
T ss_dssp             CSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEECTTTTGGGCSSHHHHHHHHHHHHHC
T ss_pred             cCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcCHHHHHHHHHcCCCEEEEccHHHhCCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999864    478999999999999999999999999999 99999888 99999999987764

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=100.00  E-value=1.7e-41  Score=263.12  Aligned_cols=150  Identities=46%  Similarity=0.736  Sum_probs=141.2

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHH---HHHHcCCceEEEecCCCCHHhHHhhHhcCC--CCCeEEEE
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQ---RIKSKGMRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVM   74 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~---~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m   74 (157)
                      |+.||.+|++.+++  ||++|||.|+.+ ++ .++++   .+|++|+++|+++||+||++.+++++   +  .+|+|++|
T Consensus        72 mv~dp~~~i~~~~~--Ad~itvH~ea~~~~~-~~~i~~~~~i~~~G~k~gvalnp~tp~~~~~~~l---~~g~~D~Vlvm  145 (227)
T 1tqx_A           72 MVEYPEKYVPLLKT--SNQLTFHFEALNEDT-ERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPIL---DTNLINTVLVM  145 (227)
T ss_dssp             ESSCGGGGGGGCTT--SSEEEEEGGGGTTCH-HHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHH---TTTCCSEEEEE
T ss_pred             EEcCHHHHHHHHHh--CCEEEEeecCCccCH-HHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHh---hcCCcCEEEEe
Confidence            89999999999988  999999999988 66 99999   99999999999999999999999999   7  89999999


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +++|||+||+|.+..++||+++|++.++++|+||||||++|++++.++|||++|+||+||+++||.+++++|++.++..+
T Consensus       146 sV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~~d~~~~i~~l~~~~~~~~  225 (227)
T 1tqx_A          146 TVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYL  225 (227)
T ss_dssp             SSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHHHHC-
T ss_pred             eeccCCCCcccchHHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999987789999999999999999999999999999999999999999999999888766


Q ss_pred             hc
Q 031554          155 KN  156 (157)
Q Consensus       155 ~~  156 (157)
                      .|
T Consensus       226 ~~  227 (227)
T 1tqx_A          226 NN  227 (227)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=100.00  E-value=7.2e-40  Score=255.44  Aligned_cols=145  Identities=21%  Similarity=0.338  Sum_probs=138.3

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---------CCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---------GMRPGVALKPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---------g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      |+.||++|++.++++|||++|||.|+.+++ .++++.+|++         |+++|+++||+||++.+++++   +.+|+|
T Consensus        77 Mv~~p~~~i~~~~~aGAd~itvH~ea~~~~-~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l---~~~D~v  152 (237)
T 3cu2_A           77 MVRNQLEVAKAVVANGANLVTLQLEQYHDF-ALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYL---DQIDVI  152 (237)
T ss_dssp             ECSCHHHHHHHHHHTTCSEEEEETTCTTSH-HHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTT---TTCSEE
T ss_pred             EEECHHHHHHHHHHcCCCEEEEecCCcccH-HHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHh---hcCcee
Confidence            789999999999999999999999999887 9999999999         999999999999999999999   899999


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCCHhhHHHHHH--cCCCEEEEcccccCCCCHHHHHHH
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEAAS--AGANCIVAGSSVFGAPEPAHVISL  145 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~~~~i~~~~~--~Gad~vV~GSai~~~~d~~~~~~~  145 (157)
                      ++|+++|||+||+|.+..++||+++|++..    +++|+||||||.+|++++.+  +|||++|+||+||++ ||.+++++
T Consensus       153 lvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~-d~~~~~~~  231 (237)
T 3cu2_A          153 QLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG-ELKTNLKV  231 (237)
T ss_dssp             EEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS-CHHHHHHH
T ss_pred             eeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCC-CHHHHHHH
Confidence            999999999999999999999999998753    68999999999999999999  999999999999998 99999999


Q ss_pred             HHHHH
Q 031554          146 MRKSV  150 (157)
Q Consensus       146 l~~~~  150 (157)
                      |++.+
T Consensus       232 l~~~~  236 (237)
T 3cu2_A          232 WKSSI  236 (237)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98753

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=100.00  E-value=4.3e-38  Score=244.42  Aligned_cols=148  Identities=41%  Similarity=0.650  Sum_probs=135.5

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      |+.||++|++.+.++|||+||||.|  +.+++ .++++.++++|+++|++++|+||.+.+++++   +.+|+|++|+++|
T Consensus        70 mv~dp~~~i~~~~~aGadgv~vh~e~~~~~~~-~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~---~~~D~v~~msv~p  145 (230)
T 1tqj_A           70 MIVEPEKYVEDFAKAGADIISVHVEHNASPHL-HRTLCQIRELGKKAGAVLNPSTPLDFLEYVL---PVCDLILIMSVNP  145 (230)
T ss_dssp             ESSSGGGTHHHHHHHTCSEEEEECSTTTCTTH-HHHHHHHHHTTCEEEEEECTTCCGGGGTTTG---GGCSEEEEESSCC
T ss_pred             EccCHHHHHHHHHHcCCCEEEECcccccchhH-HHHHHHHHHcCCcEEEEEeCCCcHHHHHHHH---hcCCEEEEEEecc
Confidence            7899999999999999999999999  98887 9999999999999999999999999999999   7899999999999


Q ss_pred             CCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      ||+||+|.+..+++|+++|+..    ++++|+||||||.+|++++.++|||++|+||+||+++||.+++++|++.++.
T Consensus       146 g~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvGSai~~a~d~~~~~~~l~~~~~~  223 (230)
T 1tqj_A          146 GFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP  223 (230)
T ss_dssp             ----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTCCC-
T ss_pred             ccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999864    3799999999999999999999999999999999999999999999875543

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=100.00  E-value=9.5e-36  Score=230.54  Aligned_cols=154  Identities=81%  Similarity=1.291  Sum_probs=142.6

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCC---CCCeEEEEeee
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGAN---PVEMVLVMTVE   77 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~---~~d~vl~m~v~   77 (157)
                      |+.||.+|++.+.++|+|+|+||.+..++++.+.++.++++|+++|++++|+|+.+.+++++   .   .+|+|++|+++
T Consensus        72 mv~d~~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~~g~~igv~~~p~t~~e~~~~~~---~~~~~~d~vl~~sv~  148 (228)
T 1h1y_A           72 MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLV---EAENPVELVLVMTVE  148 (228)
T ss_dssp             ESSCGGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHH---HSSSCCSEEEEESSC
T ss_pred             EecCHHHHHHHHHHcCCCEEEECCCCcccHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH---hcCCCCCEEEEEeec
Confidence            78999999999999999999999998876657899999999999999999999999999998   6   89999999999


Q ss_pred             CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhhcC
Q 031554           78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS  157 (157)
Q Consensus        78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~~~  157 (157)
                      ||++||+|.+..+++++++|+..++++|.+|||||.+|++++.++|||++|+||+||+++||.+++++|++.++..+.+|
T Consensus       149 pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~~ni~~~~~aGaD~vvvGsai~~~~d~~~~~~~l~~~~~~~~~~~  228 (228)
T 1h1y_A          149 PGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS  228 (228)
T ss_dssp             TTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHHHC----
T ss_pred             CCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999999999987789999999999999999999999999999999999999999999999888766554

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=99.97  E-value=1.9e-30  Score=200.37  Aligned_cols=146  Identities=40%  Similarity=0.646  Sum_probs=135.0

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      |+.+|.++++.+.++|+|+|++|.+  ..++. .++++.++++|+++|++++|+|+.+.++++.   ..+|+|++|++.|
T Consensus        76 ~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~-~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~---~~~d~vl~~~~~p  151 (230)
T 1rpx_A           76 MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHL-HRTINQIKSLGAKAGVVLNPGTPLTAIEYVL---DAVDLVLIMSVNP  151 (230)
T ss_dssp             ESSSHHHHHHHHHHTTCSEEEEECSTTTCSCH-HHHHHHHHHTTSEEEEEECTTCCGGGGTTTT---TTCSEEEEESSCT
T ss_pred             EecCHHHHHHHHHHcCCCEEEEEecCccchhH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH---hhCCEEEEEEEcC
Confidence            5778999999999999999999999  77776 8999999999999999999999999998888   7899999999999


Q ss_pred             CCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      |++||.|.+..+++++++|+..+    ++++.++||||++|+.++.++|||++++||+||+++||.+++++|++.+
T Consensus       152 g~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~~~n~~~~~~aGad~vvvgSaI~~a~dp~~a~~~l~~~~  227 (230)
T 1rpx_A          152 GFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSK  227 (230)
T ss_dssp             TCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTCC
T ss_pred             CCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHH
Confidence            99999999989999998888653    7899999999999999999999999999999999999999999987643

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=99.97  E-value=2.3e-30  Score=198.20  Aligned_cols=146  Identities=42%  Similarity=0.716  Sum_probs=134.6

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      |+.||.++++.+.++|+|+|++|.+..+.+ .+.++.++++|.++|++++|.|+.+.++++.   ..+|+|++|++.||+
T Consensus        69 ~v~d~~~~i~~~~~~gad~v~vh~~~~~~~-~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~---~~~d~vl~~~~~~g~  144 (220)
T 2fli_A           69 MVVDPERYVEAFAQAGADIMTIHTESTRHI-HGALQKIKAAGMKAGVVINPGTPATALEPLL---DLVDQVLIMTVNPGF  144 (220)
T ss_dssp             ESSSGGGGHHHHHHHTCSEEEEEGGGCSCH-HHHHHHHHHTTSEEEEEECTTSCGGGGGGGT---TTCSEEEEESSCTTC
T ss_pred             eecCHHHHHHHHHHcCCCEEEEccCccccH-HHHHHHHHHcCCcEEEEEcCCCCHHHHHHHH---hhCCEEEEEEECCCC
Confidence            568888899999999999999999988776 8999999999999999999999999998888   789999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      +||.|.+..+++++++|+..    +++++.++||||++|++++.++|||++|+||+||+++||.+++++|++.+
T Consensus       145 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~a~~~~~~~~  218 (220)
T 2fli_A          145 GGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL  218 (220)
T ss_dssp             SSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHh
Confidence            99999998888888888764    27899999999999999999999999999999999999999999998765

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=99.95  E-value=1.8e-28  Score=188.41  Aligned_cols=146  Identities=14%  Similarity=0.156  Sum_probs=130.6

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEE-EecCCCCHHhHHhhHhcCCCCCeEE-EEeeeCCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGV-ALKPGTSVEEVYPLVEGANPVEMVL-VMTVEPGF   80 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl-~m~v~pG~   80 (157)
                      ..|.+|++.+.++|||++++|.++.++.+.++++.++++|+++++ .++|.|+ +.+.++.+  .++|++. .|++.|++
T Consensus        70 d~p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~-~~~~~~~~--~g~d~v~~~~~~~~~~  146 (218)
T 3jr2_A           70 DGGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTM-QDAKAWVD--LGITQAIYHRSRDAEL  146 (218)
T ss_dssp             SCHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCH-HHHHHHHH--TTCCEEEEECCHHHHH
T ss_pred             ccHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeecCCH-HHHHHHHH--cCccceeeeecccccc
Confidence            578999999999999999999998765558899999999999999 7899997 56666654  3789875 58889999


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +||.+.+..+++|++++.  ++++|.|+||||++|++++.++|||++|+||+||+++||.+++ ++++.++..|
T Consensus       147 ~g~~~~~~~l~~i~~~~~--~~~pi~v~GGI~~~~~~~~~~aGAd~vvvGsaI~~a~dp~~a~-~l~~~~~~~~  217 (218)
T 3jr2_A          147 AGIGWTTDDLDKMRQLSA--LGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAGAEGQQTAA-ALREQIDRFW  217 (218)
T ss_dssp             HTCCSCHHHHHHHHHHHH--TTCEEEEESSCCGGGGGGGTTSCEEEEEESGGGSHHHHHHHHH-HHHHHHHHHC
T ss_pred             CCCcCCHHHHHHHHHHhC--CCCCEEEECCCCHHHHHHHHHcCCCEEEEchhhcCCCCHHHHH-HHHHHHHhhC
Confidence            999999999999999886  4789999999999999999999999999999999999999999 9999998877

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=99.93  E-value=2.6e-25  Score=171.61  Aligned_cols=149  Identities=13%  Similarity=0.153  Sum_probs=124.6

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCe-EEEEeeeC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEM-VLVMTVEP   78 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~-vl~m~v~p   78 (157)
                      ..|.++.+.++++|||++|||.++..+.+.+.++.++++|   ..+|++++++|+.+.++++++.  .+|. ++.|+..+
T Consensus        69 Dip~t~~~~~~~~Gad~vtVH~~~g~~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~~~~~~~--~~~~~v~~~a~~~  146 (221)
T 3exr_A           69 DAGGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDA--GISQAIYHQSRDA  146 (221)
T ss_dssp             SCHHHHHHHHHTTTCSEEEEETTSCHHHHHHHHHHHHHHCTTTCEEEEECCSSCCHHHHHHHHHT--TCCEEEEECCHHH
T ss_pred             ccHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHhcCCCcceEEEEEcCCCCHHHHHHHHcC--CHHHHHHHHHHhc
Confidence            6799999999999999999999988776689999999988   7899999999999998888753  5544 55566666


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~  155 (157)
                      +.+|+...+.-++++++...  ++++|.|||||+++|++.+.++|||.+|+||+||+++||.++++.+++.++..|+
T Consensus       147 ~~~Gvv~s~~e~~~ir~~~~--~~~~i~v~gGI~~~~~~~~~~aGad~~VvG~~I~~a~dp~~a~~~~~~~~~~~~~  221 (221)
T 3exr_A          147 LLAGETWGEKDLNKVKKLIE--MGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIKRIWG  221 (221)
T ss_dssp             HHHTCCCCHHHHHHHHHHHH--HTCEEEEESSCCGGGGGGGTTCCCSEEEECHHHHTSSSHHHHHHHHHHHHHHHHC
T ss_pred             CCCccccCHHHHHHHHHhhc--CCceEEEECCCCHHHHHHHHHCCCCEEEECchhhCCCCHHHHHHHHHHHHHHHhC
Confidence            66666544444444544433  3688999999999999999999999999999999999999999999999999883

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=99.93  E-value=3e-25  Score=168.78  Aligned_cols=146  Identities=20%  Similarity=0.188  Sum_probs=126.6

Q ss_pred             CcChHH-HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE-ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            2 VTNPLD-YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         2 v~~p~~-~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      +.+|.+ +++.+.++|+|++++|.++.++.+.++++.++++|+++++. ++|.|+.+.++.+.+  .++|+|   +++||
T Consensus        62 ~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~--~g~d~i---~v~~g  136 (211)
T 3f4w_A           62 IMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE--AGADML---AVHTG  136 (211)
T ss_dssp             ECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--HTCCEE---EEECC
T ss_pred             eccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH--cCCCEE---EEcCC
Confidence            344444 59999999999999999986443488999999999999997 688888888888775  368986   45799


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      ++||.+.+..+++++++++..+++++.++|||+++|+.++.++|||++++||+||+++||.++++++++.+++
T Consensus       137 ~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~~  209 (211)
T 3f4w_A          137 TDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQ  209 (211)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             CcccccCCCCHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHhh
Confidence            9999987667889999999877899999999999999999999999999999999999999999999988765

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=99.93  E-value=1.3e-25  Score=170.32  Aligned_cols=142  Identities=18%  Similarity=0.145  Sum_probs=120.1

Q ss_pred             CCcC-hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEec-CCCCHHhHHhhHhcCCCCCeE-EEEeee
Q 031554            1 MVTN-PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALK-PGTSVEEVYPLVEGANPVEMV-LVMTVE   77 (157)
Q Consensus         1 Mv~~-p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~-~~t~~~~~~~~~~~~~~~d~v-l~m~v~   77 (157)
                      |+.| |.+|++.+.++|||+|++|.+..+..+.++++.++++|..+|+++. ++||.+.++.+.+  ..+|+| +.|++.
T Consensus        61 ~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~--~g~d~v~~~~~~~  138 (207)
T 3ajx_A           61 KTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRA--LGAKFVEMHAGLD  138 (207)
T ss_dssp             EECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--TTCSEEEEECCHH
T ss_pred             EecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHH--hCCCEEEEEeccc
Confidence            5668 8999999999999999999998755558899999999999999773 4455554444433  368999 999998


Q ss_pred             CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      |++.|+.+.+   ++++++++.  ++++.++|||+++|++++.++|||++|+||+||+++||.++++++++.
T Consensus       139 ~~~~g~~~~~---~~i~~~~~~--~~pi~v~GGI~~~~~~~~~~aGad~vvvGsaI~~~~dp~~~~~~~~~~  205 (207)
T 3ajx_A          139 EQAKPGFDLN---GLLAAGEKA--RVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGAADPAAAAKELRAA  205 (207)
T ss_dssp             HHTSTTCCTH---HHHHHHHHH--TSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHT
T ss_pred             ccccCCCchH---HHHHHhhCC--CCCEEEECCcCHHHHHHHHHcCCCEEEEeeeccCCCCHHHHHHHHHHH
Confidence            8888887665   788888765  688999999999999999999999999999999999999999998764

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=99.92  E-value=1.4e-26  Score=176.68  Aligned_cols=139  Identities=17%  Similarity=0.245  Sum_probs=123.6

Q ss_pred             CcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhh-HhcCCCCCeEEEEeeeCCC
Q 031554            2 VTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPL-VEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         2 v~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~-~~~~~~~d~vl~m~v~pG~   80 (157)
                      ..+|..|++.+.++|||++|||.++..    +.++.+++.+   |++++|.||.+.+.++ .   +.+|.++.|+++||+
T Consensus        64 ~~t~~~~v~~~~~~Gad~vtvh~~~g~----~~i~~~~~~~---gv~vl~~t~~~~~~~~~~---~~v~~~~~~a~~~G~  133 (208)
T 2czd_A           64 PNTNRLIARKVFGAGADYVIVHTFVGR----DSVMAVKELG---EIIMVVEMSHPGALEFIN---PLTDRFIEVANEIEP  133 (208)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEESTTCH----HHHHHHHTTS---EEEEECCCCSGGGGTTTG---GGHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeccCCH----HHHHHHHHhC---CcEEEEecCCcchhhHHH---HHHHHHHHHHHHhCC
Confidence            578999999999999999999999754    4588888887   9999999999887665 5   678999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhCCC-CcEEEEcCCCHh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI~~~--~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      +||.+.+...++++++|+..+. +.+ +||||+.+  ++.++.++|||++|+||+||+++||.++++++++.++
T Consensus       134 ~G~~~~~~~~~~i~~lr~~~~~~~~i-v~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a~dp~~~~~~l~~~i~  206 (208)
T 2czd_A          134 FGVIAPGTRPERIGYIRDRLKEGIKI-LAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR  206 (208)
T ss_dssp             SEEECCCSSTHHHHHHHHHSCTTCEE-EECCCCSSTTHHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHC
T ss_pred             cEEEECCCChHHHHHHHHhCCCCeEE-EECCCCCCCCCHHHHHHcCCCEEEEChHHhcCCCHHHHHHHHHHHHh
Confidence            9999999888899999988653 545 99999998  9999999999999999999999999999999988664

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=99.92  E-value=8.7e-25  Score=167.57  Aligned_cols=142  Identities=12%  Similarity=0.056  Sum_probs=118.3

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEec-C--CCCHHhHHhhHhcCCCCCeEE---EEee
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALK-P--GTSVEEVYPLVEGANPVEMVL---VMTV   76 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~-~--~t~~~~~~~~~~~~~~~d~vl---~m~v   76 (157)
                      ..|.++++.++++|||++|||.+...+.+.++++.++++|+++|+.+. +  .++.+.+.++    ...|+++   .|++
T Consensus        67 dip~t~~~~~~~~Gad~itvh~~~g~~~l~~~~~~~~~~g~~~~~~ll~~~t~~~~~~l~~~----~~~~~vl~~a~~~~  142 (216)
T 1q6o_A           67 DAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDA----GIGQVVYHRSRDAQ  142 (216)
T ss_dssp             SCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHT----TCCEEEEECCHHHH
T ss_pred             ccHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCceeeeeeCCChhhHHHHHhc----CcHHHHHHHHHHHH
Confidence            479999999999999999999999887558999999999999998554 4  3445545443    4567888   7888


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +||++|      ..++++++|+.. ++++|.|||||++++++++.++|||++|+||+||+++||.++++++++.++..|
T Consensus       143 ~~G~~g------~~~~i~~lr~~~~~~~~i~v~GGI~~~~~~~~~~aGad~ivvG~~I~~a~dp~~~~~~~~~~i~~~~  215 (216)
T 1q6o_A          143 AAGVAW------GEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELW  215 (216)
T ss_dssp             HTTCCC------CHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHHHC
T ss_pred             hcCCCC------CHHHHHHHHHhcCCCCcEEEECCcChhhHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHHHHHhhc
Confidence            999988      245566666654 368899999999999999999999999999999999999999999999887655

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=99.91  E-value=1.9e-25  Score=174.69  Aligned_cols=148  Identities=18%  Similarity=0.202  Sum_probs=123.9

Q ss_pred             cChHH---HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH---cCCc-e-EEEecCCCCH--HhH-Hhh---HhcCCCC
Q 031554            3 TNPLD---YVEPLGKAGASGFTFHVEISKDNWQELVQRIKS---KGMR-P-GVALKPGTSV--EEV-YPL---VEGANPV   68 (157)
Q Consensus         3 ~~p~~---~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~---~g~~-~-gl~l~~~t~~--~~~-~~~---~~~~~~~   68 (157)
                      ..|.+   |++.++++|||+||||.++..+.+.++++.+++   +|++ + +++++|.|+.  +.+ +++   .   +..
T Consensus        66 Dip~t~~~~~~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~~~~G~~~~~~lav~~~Ts~~~~~l~~~~~~~~---~~~  142 (246)
T 2yyu_A           66 DIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISR---PLV  142 (246)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHHHHSCSSSCCCEEEEESSCTTCCHHHHHHTSCCCS---CHH
T ss_pred             cchHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHhhcccCCcCCCEEEEEeCCCCCHHHHHHHhcCCC---CHH
Confidence            56777   999999999999999999988865899999999   7865 3 5789999985  667 665   3   456


Q ss_pred             CeEEEEeee-CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCC
Q 031554           69 EMVLVMTVE-PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        69 d~vl~m~v~-pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      |+|+.|++. |++++|.|..+..+ ++++|+..+...|.|||||+++           |+.++.++|||++|+||+||++
T Consensus       143 d~Vl~ma~~~~~~G~~g~V~~~~e-i~~lr~~~~~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a  221 (246)
T 2yyu_A          143 ETVAHYAALAKESGLDGVVCSANE-AAFIKERCGASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRA  221 (246)
T ss_dssp             HHHHHHHHHHHHHTCCEEECCHHH-HHHHHHHHCTTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTS
T ss_pred             HHHHHHHHHHHHhCCCEEEeCHHH-HHHHHHhcCCCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCC
Confidence            899999886 77778888888877 8888886543349999999999           9999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 031554          137 PEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       137 ~d~~~~~~~l~~~~~~~~  154 (157)
                      +||.++++.+++.++.++
T Consensus       222 ~dp~~a~~~l~~~i~~~~  239 (246)
T 2yyu_A          222 ADPLRTYARLQHEWNGGE  239 (246)
T ss_dssp             SSHHHHHHHHHHHCC---
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999998776544

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=99.91  E-value=3.4e-25  Score=172.58  Aligned_cols=150  Identities=19%  Similarity=0.214  Sum_probs=123.5

Q ss_pred             cChH---HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CCc----eEEEecCCCCHHhH-Hhh-HhcCCCCCe
Q 031554            3 TNPL---DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---GMR----PGVALKPGTSVEEV-YPL-VEGANPVEM   70 (157)
Q Consensus         3 ~~p~---~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~----~gl~l~~~t~~~~~-~~~-~~~~~~~d~   70 (157)
                      ..|.   .|++.++++|||++|||.++..+.+.++++.++++   |++    +++.+.++++.+.+ +++ ++. +..|+
T Consensus        65 Dip~t~~~~~~~~~~~Gad~vtvH~~~g~~~l~~~~~~~~~~~~~g~~~~~~~~V~~~ts~~~~~l~~~~~~~~-~~~d~  143 (239)
T 1dbt_A           65 DIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEK-SLIDT  143 (239)
T ss_dssp             SCHHHHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBCS-CHHHH
T ss_pred             cchHHHHHHHHHHHhcCCCEEEEeCcCCHHHHHHHHHHHHhhhccCCCCccEEEEEEcCCCCHHHHHHHhccCC-CHHHH
Confidence            5676   49999999999999999999887657899999998   886    44555556666777 665 411 23788


Q ss_pred             EEEEeee-CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhH-----------HHHHHcCCCEEEEcccccCCCC
Q 031554           71 VLVMTVE-PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTI-----------AEAASAGANCIVAGSSVFGAPE  138 (157)
Q Consensus        71 vl~m~v~-pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i-----------~~~~~~Gad~vV~GSai~~~~d  138 (157)
                      |+.|++. |++++|.|..+. ++++++|+..++..|.|||||++++.           .++.++|||++|+||+||+++|
T Consensus       144 Vl~ma~~~~~~G~~g~v~~~-~~i~~lr~~~~~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~a~d  222 (239)
T 1dbt_A          144 VVHYSKQAEESGLDGVVCSV-HEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAED  222 (239)
T ss_dssp             HHHHHHHHHHTTCSEEECCG-GGHHHHTTTSCTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSC
T ss_pred             HHHHHHHHHHhCCCEEEECH-HHHHHHHHhcCCCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcCCCC
Confidence            9999886 788888788777 78999998776668999999999998           8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 031554          139 PAHVISLMRKSVEDAQ  154 (157)
Q Consensus       139 ~~~~~~~l~~~~~~~~  154 (157)
                      |.++++.+++.++..|
T Consensus       223 p~~a~~~l~~~i~~~~  238 (239)
T 1dbt_A          223 PVKAYKAVRLEWEGIK  238 (239)
T ss_dssp             HHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999998876433

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=99.91  E-value=1.3e-25  Score=175.67  Aligned_cols=147  Identities=16%  Similarity=0.185  Sum_probs=122.4

Q ss_pred             cChHH---HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ce-EEEecC--CCCHHhHHhhH-hcCCCCCeEEEE
Q 031554            3 TNPLD---YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RP-GVALKP--GTSVEEVYPLV-EGANPVEMVLVM   74 (157)
Q Consensus         3 ~~p~~---~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~-gl~l~~--~t~~~~~~~~~-~~~~~~d~vl~m   74 (157)
                      ..|.+   |++.++++|||++|||.++..+.+.++++.++++|+ ++ ++++++  +++.+.++++. +. +..|+|+.|
T Consensus        76 Dip~t~~~~i~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~G~~~~~~l~v~~~ts~~~~~l~~~~~~~-~~~d~Vl~m  154 (245)
T 1eix_A           76 DIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTL-SPADYAERL  154 (245)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTCCS-CHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHhccCC-CHHHHHHHH
Confidence            56764   999999999999999999988855899999999998 66 445554  55557787761 01 456999999


Q ss_pred             ee-eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554           75 TV-EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus        75 ~v-~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~d~~~~  142 (157)
                      ++ .|++++|.|.++.++ ++++|+..++..|.|||||+++           |++++.++|||++|+||+||+++||.++
T Consensus       155 a~~~~~~G~~g~V~~~~e-i~~lr~~~~~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a  233 (245)
T 1eix_A          155 AALTQKCGLDGVVCSAQE-AVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQT  233 (245)
T ss_dssp             HHHHHHTTCSEEECCGGG-HHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSHHHH
T ss_pred             HHHHHHcCCCeEEeCHHH-HHHHHHhcCCCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcCCCCHHHH
Confidence            88 788888888888877 8888887655689999999999           9999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 031554          143 ISLMRKSVE  151 (157)
Q Consensus       143 ~~~l~~~~~  151 (157)
                      ++.+++.++
T Consensus       234 ~~~l~~~i~  242 (245)
T 1eix_A          234 LKAINASLQ  242 (245)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHH
Confidence            999987654

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=99.89  E-value=6.4e-23  Score=159.52  Aligned_cols=143  Identities=15%  Similarity=0.192  Sum_probs=119.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCC-eEEEEeeeCCCCCcc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVE-MVLVMTVEPGFGGQK   84 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d-~vl~m~v~pG~~gq~   84 (157)
                      +++++.+.++|||+|++|.++..++ .++++.++++|.++++.++|.|+.+.++.+.   ...| ++.+|++ ||++|++
T Consensus        98 ~~~~~~~~~~Gad~v~~~~~~~~~~-~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~---~~~d~~i~~~~~-~G~~g~~  172 (248)
T 1geq_A           98 RNFLAEAKASGVDGILVVDLPVFHA-KEFTEIAREEGIKTVFLAAPNTPDERLKVID---DMTTGFVYLVSL-YGTTGAR  172 (248)
T ss_dssp             HHHHHHHHHHTCCEEEETTCCGGGH-HHHHHHHHHHTCEEEEEECTTCCHHHHHHHH---HHCSSEEEEECC-C------
T ss_pred             HHHHHHHHHCCCCEEEECCCChhhH-HHHHHHHHHhCCCeEEEECCCCHHHHHHHHH---hcCCCeEEEEEC-CccCCCC
Confidence            7899999999999999999888777 8999999999999999999999999999998   5677 8888888 9988886


Q ss_pred             --cchhHHHHHHHHHhhCCCCcEEEEcCCCH-hhHHHHHHcCCCEEEEcccccCCC--CHHHHHHHHHHHHHHHhh
Q 031554           85 --FMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAP--EPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        85 --~~~~~~~ki~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~~--d~~~~~~~l~~~~~~~~~  155 (157)
                        +.+..+++++++++.. +++|.++|||+. +|+.++.++|||++++||++|+..  ++ ++++++.+.++.+.+
T Consensus       173 ~~~~~~~~~~i~~l~~~~-~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~~~~~~-~~~~~~~~~~~~~~~  246 (248)
T 1geq_A          173 EEIPKTAYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKG-REATEFLKKKVEELL  246 (248)
T ss_dssp             -CCCHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHG-GGCHHHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHhhc-CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhhHhhCh-HHHHHHHHHHHHHhc
Confidence              6677889999999875 799999999997 999999999999999999999752  44 566666666655543

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=99.86  E-value=2.6e-21  Score=152.84  Aligned_cols=126  Identities=12%  Similarity=0.148  Sum_probs=110.7

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc--
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--   83 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq--   83 (157)
                      ++|++.+.++|+|++++|.+..++. .++++.++++|++.++.++|.|+.+.++.+.+.  ..+++.+|++. |++||  
T Consensus       112 ~~~~~~~~~aGadgii~~d~~~e~~-~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~--~~g~v~~~s~~-G~tG~~~  187 (268)
T 1qop_A          112 DAFYARCEQVGVDSVLVADVPVEES-APFRQAALRHNIAPIFICPPNADDDLLRQVASY--GRGYTYLLSRS-GVTGAEN  187 (268)
T ss_dssp             HHHHHHHHHHTCCEEEETTCCGGGC-HHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH--CCSCEEEESSS-SCCCSSS
T ss_pred             HHHHHHHHHcCCCEEEEcCCCHHHH-HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhh--CCCcEEEEecC-CcCCCcc
Confidence            7899999999999999998887777 999999999999999999999999998888853  33478888777 99998  


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      .+.+...++++++|+.. +++|.|+|||+ ++++.++..+|||++|+||+|++.
T Consensus       188 ~~~~~~~~~i~~lr~~~-~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~  240 (268)
T 1qop_A          188 RGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKI  240 (268)
T ss_dssp             CC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred             CCCchHHHHHHHHHhcc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhh
Confidence            56677788999999875 78999999999 999999889999999999999864

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=99.82  E-value=2e-19  Score=141.19  Aligned_cols=137  Identities=15%  Similarity=0.272  Sum_probs=113.6

Q ss_pred             HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc--ccc
Q 031554            9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFM   86 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq--~~~   86 (157)
                      ++.+.++|+|++++|....++. .++++.++++|++..+.++|.|+.+.++.+.+.  ..+++.++++ +|++|+  .+.
T Consensus       111 ~~~a~~aGadgv~v~d~~~~~~-~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~--~~g~v~~~s~-~G~tG~~~~~~  186 (262)
T 1rd5_A          111 LAKMKEAGVHGLIVPDLPYVAA-HSLWSEAKNNNLELVLLTTPAIPEDRMKEITKA--SEGFVYLVSV-NGVTGPRANVN  186 (262)
T ss_dssp             THHHHHTTCCEEECTTCBTTTH-HHHHHHHHHTTCEECEEECTTSCHHHHHHHHHH--CCSCEEEECS-SCCBCTTSCBC
T ss_pred             HHHHHHcCCCEEEEcCCChhhH-HHHHHHHHHcCCceEEEECCCCCHHHHHHHHhc--CCCeEEEecC-CCCCCCCcCCC
Confidence            4568999999999998777666 899999999999999999999999988887753  3468888886 898888  666


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC----CCHHHHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA----PEPAHVISLMRKSV  150 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~----~d~~~~~~~l~~~~  150 (157)
                      +..+++++++++.. +++|.++|||+ ++++.++.++|||++|+||+|++.    .++.+..+.+++..
T Consensus       187 ~~~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~~~~~~~~~~~~~~~~~~~  254 (262)
T 1rd5_A          187 PRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYA  254 (262)
T ss_dssp             THHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhHHHhccChhHHHHHHHHHH
Confidence            77888999999874 79999999999 999999999999999999999964    24555444444443

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=99.81  E-value=5.2e-19  Score=139.80  Aligned_cols=143  Identities=13%  Similarity=0.163  Sum_probs=115.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-   84 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~-   84 (157)
                      ++|++.+.++|+|++.+|-...++. .++++.++++|++....++|.|+.++++++.+.  ..++|.++++.+.+|.+. 
T Consensus       113 e~f~~~~~~aGvdgvii~Dlp~ee~-~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~--~~gfvY~vS~~GvTG~~~~  189 (267)
T 3vnd_A          113 DEFYTKAQAAGVDSVLIADVPVEES-APFSKAAKAHGIAPIFIAPPNADADTLKMVSEQ--GEGYTYLLSRAGVTGTESK  189 (267)
T ss_dssp             HHHHHHHHHHTCCEEEETTSCGGGC-HHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH--CCSCEEESCCCCCC-----
T ss_pred             HHHHHHHHHcCCCEEEeCCCCHhhH-HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHh--CCCcEEEEecCCCCCCccC
Confidence            8899999999999999998888888 999999999999999999999999999999853  335788888887777765 


Q ss_pred             cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHHHHH
Q 031554           85 FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKSVED  152 (157)
Q Consensus        85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~~  152 (157)
                      +.+...+.++++|+.. +.++.|+|||+ ++++++...+|||++|+||+|++.     .++.+..+.+++.++.
T Consensus       190 ~~~~~~~~v~~vr~~~-~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~~i~~~~~~~~~~~~~~~~~~~~  262 (267)
T 3vnd_A          190 AGEPIENILTQLAEFN-APPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKIIEAHQHDEATLLAKLAEFTTA  262 (267)
T ss_dssp             ---CHHHHHHHHHTTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            5566778899999874 78999999996 999998889999999999999862     2455555555555443

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=99.76  E-value=3.1e-17  Score=125.53  Aligned_cols=133  Identities=15%  Similarity=0.161  Sum_probs=102.9

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc--
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF--   85 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~--   85 (157)
                      +++.+.++|+|.|++|.+.  .+ .+.++.++. |+.+|++++  |+.+..+...   .++|+|+++.+.   .++.+  
T Consensus        80 ~~~~a~~~gad~v~l~~~~--~~-~~~~~~~~~-~~~ig~sv~--t~~~~~~a~~---~gaD~i~~~~~f---~~~~~~g  147 (221)
T 1yad_A           80 RVDIALFSTIHRVQLPSGS--FS-PKQIRARFP-HLHIGRSVH--SLEEAVQAEK---EDADYVLFGHVF---ETDCKKG  147 (221)
T ss_dssp             CHHHHHTTTCCEEEECTTS--CC-HHHHHHHCT-TCEEEEEEC--SHHHHHHHHH---TTCSEEEEECCC----------
T ss_pred             hHHHHHHcCCCEEEeCCCc--cC-HHHHHHHCC-CCEEEEEcC--CHHHHHHHHh---CCCCEEEECCcc---ccCCCCC
Confidence            5788999999999999764  33 456666655 888898874  5555444444   689999998653   33333  


Q ss_pred             -chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554           86 -MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus        86 -~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                       .+..++.++++++.. ++++.++||||++|+.++.++|||++++||++|+++||.++++.+++.++..
T Consensus       148 ~~~~~~~~l~~~~~~~-~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~  215 (221)
T 1yad_A          148 LEGRGVSLLSDIKQRI-SIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLKEM  215 (221)
T ss_dssp             ---CHHHHHHHHHHHC-CSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHHHHHHHHHh
Confidence             244678888888764 7899999999999999999999999999999999899999999999887653

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=99.75  E-value=2.5e-17  Score=124.77  Aligned_cols=138  Identities=18%  Similarity=0.171  Sum_probs=106.0

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      ++++.+.++|+|+|+++...  .+ .+.++.++ .++.+|+.+  .|+.+..+.+.   .++|+|+++++.|+.+.+.+.
T Consensus        77 ~~~~~a~~~gad~v~l~~~~--~~-~~~~~~~~-~~~~~~v~~--~t~~e~~~~~~---~g~d~i~~~~~~~~~~~~~~~  147 (215)
T 1xi3_A           77 DRVDVALAVDADGVQLGPED--MP-IEVAKEIA-PNLIIGASV--YSLEEALEAEK---KGADYLGAGSVFPTKTKEDAR  147 (215)
T ss_dssp             SCHHHHHHHTCSEEEECTTS--CC-HHHHHHHC-TTSEEEEEE--SSHHHHHHHHH---HTCSEEEEECSSCC----CCC
T ss_pred             ChHHHHHHcCCCEEEECCcc--CC-HHHHHHhC-CCCEEEEec--CCHHHHHHHHh---cCCCEEEEcCCccCCCCCCCC
Confidence            35678899999999887543  23 34455554 577777776  56655444333   589999999887776555455


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +..++.++++++.. ++++.++|||+++|+.++.++|||++++||++++.+|+.+.+++|++.++..|
T Consensus       148 ~~~~~~l~~l~~~~-~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~~  214 (215)
T 1xi3_A          148 VIGLEGLRKIVESV-KIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEEVL  214 (215)
T ss_dssp             CCHHHHHHHHHHHC-SSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhC-CCCEEEECCcCHHHHHHHHHcCCCEEEEhHHHhCCCCHHHHHHHHHHHHhhcc
Confidence            56788888888765 78999999999999999999999999999999998999999999998887655

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=99.75  E-value=1.1e-17  Score=128.95  Aligned_cols=138  Identities=12%  Similarity=0.181  Sum_probs=109.6

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeE--E
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKD----NWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMV--L   72 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v--l   72 (157)
                      |+.+|.++++.+.++|||.|++|.+...+    .+.++++.+|+.  ++.++  +++.|+.+....+.   .++|+|  .
T Consensus        86 ~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~--~~~~t~~ea~~a~~---~Gad~i~~~  160 (234)
T 1yxy_A           86 FITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLM--ADISTFDEGLVAHQ---AGIDFVGTT  160 (234)
T ss_dssp             CBSCSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEE--EECSSHHHHHHHHH---TTCSEEECT
T ss_pred             ccCChHHHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEE--EeCCCHHHHHHHHH---cCCCEEeee
Confidence            56678899999999999999999986532    237899999998  65544  45567666555555   789999  7


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      ++++.|++  +.+.+..++.++++++.  +++|.++|||+ .+++.++.++|||++++||++|+   |...+++|++.+
T Consensus       161 v~g~~~~~--~~~~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~---p~~~~~~l~~~~  232 (234)
T 1yxy_A          161 LSGYTPYS--RQEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR---PKEIAERFIEAL  232 (234)
T ss_dssp             TTTSSTTS--CCSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC---HHHHHHHHHHHT
T ss_pred             ccccCCCC--cCCCCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC---hHHHHHHHHHHH
Confidence            88887764  33344456777887775  79999999999 99999999999999999999997   888888887654

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=99.74  E-value=5.7e-17  Score=123.89  Aligned_cols=139  Identities=13%  Similarity=0.204  Sum_probs=108.3

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcc---hHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKD---NWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~---~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      |+.++.++++.+.++|+|.|++|.++..+   .+.++++++|+.  |+.+++  ++.|+.+..+...   .++|+|  +.
T Consensus        73 ~i~~~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~--~~~t~~e~~~~~~---~G~d~i--~~  145 (223)
T 1y0e_A           73 FITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMA--DIATVEEAKNAAR---LGFDYI--GT  145 (223)
T ss_dssp             CBSCSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEE--ECSSHHHHHHHHH---TTCSEE--EC
T ss_pred             ccCCcHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEe--cCCCHHHHHHHHH---cCCCEE--Ee
Confidence            45677889999999999999999987432   347899999998  887765  4566665444333   578986  44


Q ss_pred             eeCCCCCccc----chhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554           76 VEPGFGGQKF----MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        76 v~pG~~gq~~----~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      .++|++++.+    ....++.++++++.. ++++.++||| +.+++.++.++|||++++||++|+   |....+.+++.+
T Consensus       146 ~~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~---p~~~~~~~~~~~  221 (223)
T 1y0e_A          146 TLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR---PKEITKRFVQVM  221 (223)
T ss_dssp             TTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHTT
T ss_pred             CCCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC---cHHHHHHHHHHh
Confidence            5677776665    234567788888764 7999999999 899999999999999999999996   777777776544

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=99.72  E-value=5.7e-17  Score=126.52  Aligned_cols=136  Identities=14%  Similarity=0.071  Sum_probs=105.2

Q ss_pred             HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchh
Q 031554            9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE   88 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~   88 (157)
                      ++.+.+.|||.|++..+.  .+ ...++.+...+..+|+++  +|+.+..+...   .++|||.+..+.|..+.+...+.
T Consensus       105 ~~lA~~~gAdGVHLg~~d--l~-~~~~r~~~~~~~~iG~S~--ht~~Ea~~A~~---~GaDyI~vgpvf~T~tK~~~~~~  176 (243)
T 3o63_A          105 ADIARAAGADVLHLGQRD--LP-VNVARQILAPDTLIGRST--HDPDQVAAAAA---GDADYFCVGPCWPTPTKPGRAAP  176 (243)
T ss_dssp             HHHHHHHTCSEEEECTTS--SC-HHHHHHHSCTTCEEEEEE--CSHHHHHHHHH---SSCSEEEECCSSCCCC-----CC
T ss_pred             HHHHHHhCCCEEEecCCc--CC-HHHHHHhhCCCCEEEEeC--CCHHHHHHHhh---CCCCEEEEcCccCCCCCCCcchh
Confidence            455778899998887764  34 455666666678889887  56655444444   68999999888776554433445


Q ss_pred             HHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           89 MMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        89 ~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .++.++++++.. .++++.+.|||+++|+.++.++|||+|++||+||+++||.+++++|++.++.
T Consensus       177 gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~~~  241 (243)
T 3o63_A          177 GLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSALTA  241 (243)
T ss_dssp             CHHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence            678888888763 4899999999999999999999999999999999999999999999988764

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=99.71  E-value=3.4e-17  Score=126.82  Aligned_cols=138  Identities=11%  Similarity=0.119  Sum_probs=105.3

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC--------------CCHHhHHhhHhcCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG--------------TSVEEVYPLVEGAN   66 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~--------------t~~~~~~~~~~~~~   66 (157)
                      |+.+|++ ++.+.++|||.|++|.++..++ ..+.+.++..|.++++.+++.              ++.+.++++.+  .
T Consensus        83 gI~~~~~-~~~~l~~Gad~V~lg~~~l~~p-~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~--~  158 (244)
T 1vzw_A           83 GIRDDDT-LAAALATGCTRVNLGTAALETP-EWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNK--E  158 (244)
T ss_dssp             SCCSHHH-HHHHHHTTCSEEEECHHHHHCH-HHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHH--T
T ss_pred             CcCCHHH-HHHHHHcCCCEEEECchHhhCH-HHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHh--C
Confidence            5678885 8899999999999999988888 778888888887888777765              66777777764  3


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc---CCCEEEEcccccCCC-CHHH
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA---GANCIVAGSSVFGAP-EPAH  141 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~---Gad~vV~GSai~~~~-d~~~  141 (157)
                      ++|.|+++++.|++.+|.+..+.+   +++++.. +++|.++|||+ ++++.++.++   |||++++||++++.+ ++.+
T Consensus       159 G~~~i~~~~~~~~~~~~g~~~~~~---~~i~~~~-~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~  234 (244)
T 1vzw_A          159 GCARYVVTDIAKDGTLQGPNLELL---KNVCAAT-DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEE  234 (244)
T ss_dssp             TCCCEEEEEC-------CCCHHHH---HHHHHTC-SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHH
T ss_pred             CCCEEEEeccCcccccCCCCHHHH---HHHHHhc-CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHH
Confidence            699999999999877777654444   4455543 78999999999 5999999999   999999999999876 5565


Q ss_pred             HHHHH
Q 031554          142 VISLM  146 (157)
Q Consensus       142 ~~~~l  146 (157)
                      ..+.+
T Consensus       235 ~~~~~  239 (244)
T 1vzw_A          235 ALEAT  239 (244)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55544

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=99.70  E-value=2.1e-16  Score=120.78  Aligned_cols=136  Identities=19%  Similarity=0.161  Sum_probs=102.2

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHH-HcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIK-SKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-   84 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir-~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~-   84 (157)
                      +++.+.++|+|+|++..+..  .    +..++ ..|. .+|++  ++|+.+....+.   .++|+|+++.+.|+...+. 
T Consensus        86 ~~~~a~~~gad~v~l~~~~~--~----~~~~~~~~g~~~~~~s--~~t~~e~~~a~~---~g~d~v~~~~v~~t~~~~~~  154 (227)
T 2tps_A           86 DVELALNLKADGIHIGQEDA--N----AKEVRAAIGDMILGVS--AHTMSEVKQAEE---DGADYVGLGPIYPTETKKDT  154 (227)
T ss_dssp             CHHHHHHHTCSEEEECTTSS--C----HHHHHHHHTTSEEEEE--ECSHHHHHHHHH---HTCSEEEECCSSCCCSSSSC
T ss_pred             HHHHHHHcCCCEEEECCCcc--C----HHHHHHhcCCcEEEEe--cCCHHHHHHHHh---CCCCEEEECCCcCCCCCCCC
Confidence            57788999999999855432  2    22333 2464 44544  466666433333   5899999988887655443 


Q ss_pred             cchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           85 FMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +.+..++.++++++..+++++.++|||+++|+.++.++|||++++||++++.+|+.+.++++++.++..+
T Consensus       155 ~~~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~~  224 (227)
T 2tps_A          155 RAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYK  224 (227)
T ss_dssp             CCCCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHhcc
Confidence            3445677888888765458999999999999999999999999999999998999999999988887654

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=99.67  E-value=2.2e-15  Score=119.15  Aligned_cols=142  Identities=18%  Similarity=0.229  Sum_probs=107.9

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK   84 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~   84 (157)
                      .++|++.+.++|+|.+.++--..++. .++.+.++++|+.....+.|.|+.++++.+.+.  ..++|.+.+ ..|.+|..
T Consensus       114 ~~~f~~~~~~aGvdGvIipDlp~ee~-~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~--~~gfiY~vs-~~GvTG~~  189 (271)
T 3nav_A          114 IDDFYQRCQKAGVDSVLIADVPTNES-QPFVAAAEKFGIQPIFIAPPTASDETLRAVAQL--GKGYTYLLS-RAGVTGAE  189 (271)
T ss_dssp             HHHHHHHHHHHTCCEEEETTSCGGGC-HHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHH--CCSCEEECC-CC------
T ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHH-HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHH--CCCeEEEEe-ccCCCCcc
Confidence            47899999999999999997776777 899999999999988889999999999988853  335544433 44655543


Q ss_pred             --cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHHHH
Q 031554           85 --FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKSVE  151 (157)
Q Consensus        85 --~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~  151 (157)
                        +.+...+.++++|+.. +.++.|+|||+ ++++++...+|||++|+||+|.+.     .++.+..+.+++.++
T Consensus       190 ~~~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~~i~~~~~~~~~~~~~~~~~~~  263 (271)
T 3nav_A          190 TKANMPVHALLERLQQFD-APPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDNPAKQLTELANFTQ  263 (271)
T ss_dssp             --CCHHHHHHHHHHHHTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhhccchHHHHHHHHHHHH
Confidence              3455667788888875 78999999996 999998889999999999999852     245555555554443

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=99.66  E-value=2.8e-17  Score=127.14  Aligned_cols=142  Identities=17%  Similarity=0.126  Sum_probs=94.2

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      ..+++.++++|+|++|||.+...+.+..+++.++++|..+- .+.+-++......+.   +.++.+.-|+.++|..|.-.
T Consensus        81 ~~~~~~~~~~gad~vtvh~~~G~~~l~~~~~~~~~~g~~v~-vLt~~s~~~~~~~~~---~~~~~~a~~a~~~G~~GvV~  156 (228)
T 3m47_A           81 EKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVF-LLTEMSHPGAEMFIQ---GAADEIARMGVDLGVKNYVG  156 (228)
T ss_dssp             HHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEE-EECCCCSGGGGTTHH---HHHHHHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCCCeE-EEEeCCCccHHHHHH---HHHHHHHHHHHHhCCcEEEE
Confidence            44999999999999999999877766889999998886432 234444432211111   11233344556677666433


Q ss_pred             chhHHHHHHHHHhhCCC-CcEEEEcCCCHh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554           86 MPEMMDKVRSLRNRYPS-LDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~-~~I~vdGGI~~~--~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      .....+.++++|+..++ +.+ +++||+++  +. +..++|+|.+|+||+||+++||.++++.+++.++.+
T Consensus       157 ~at~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a~dp~~a~~~~~~~~~~~  225 (228)
T 3m47_A          157 PSTRPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLADNPAAAAAGAIESIKDL  225 (228)
T ss_dssp             CSSCHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTSSCHHHHHHHHHHHC---
T ss_pred             CCCChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCCCCHHHHHHHHHHHHHHH
Confidence            32224456777776554 777 99999986  77 889999999999999999999999999999887654

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=99.66  E-value=2.5e-15  Score=114.13  Aligned_cols=130  Identities=20%  Similarity=0.264  Sum_probs=103.0

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      ++. .++.+.++|||+|++..    .. .++++.+++.|..+.+.  +.|+.+..+.+.   .++|+|.+   .|+   +
T Consensus        69 ~~~-~i~~a~~~Gad~V~~~~----~~-~~~~~~~~~~g~~~~~g--~~t~~e~~~a~~---~G~d~v~v---~~t---~  131 (212)
T 2v82_A           69 KPE-QVDALARMGCQLIVTPN----IH-SEVIRRAVGYGMTVCPG--CATATEAFTALE---AGAQALKI---FPS---S  131 (212)
T ss_dssp             SHH-HHHHHHHTTCCEEECSS----CC-HHHHHHHHHTTCEEECE--ECSHHHHHHHHH---TTCSEEEE---TTH---H
T ss_pred             CHH-HHHHHHHcCCCEEEeCC----CC-HHHHHHHHHcCCCEEee--cCCHHHHHHHHH---CCCCEEEE---ecC---C
Confidence            454 78999999999997543    22 57788999999875444  467666655555   68999985   452   2


Q ss_pred             ccchhHHHHHHHHHhhCC-CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC----CCHHHHHHHHHHHHHHH
Q 031554           84 KFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA----PEPAHVISLMRKSVEDA  153 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~----~d~~~~~~~l~~~~~~~  153 (157)
                         +..+++++++++..+ +++|.++|||+.+|+.++.++|||++++||++|++    +||.+.+++|++.+++.
T Consensus       132 ---~~g~~~~~~l~~~~~~~ipvia~GGI~~~~i~~~~~~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~~~~~~~  203 (212)
T 2v82_A          132 ---AFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKAYREA  203 (212)
T ss_dssp             ---HHCHHHHHHHHTTSCTTCEEEEESSCCTTTHHHHHHHTCSEEEECTTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHhccCCCeEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence               245678888888765 69999999999999999999999999999999987    68999999998887653

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=99.64  E-value=3.9e-15  Score=115.54  Aligned_cols=140  Identities=17%  Similarity=0.158  Sum_probs=107.7

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEecCC-------------------CCHHhHHh
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVALKPG-------------------TSVEEVYP   60 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l~~~-------------------t~~~~~~~   60 (157)
                      ++.+|++ ++.+.++|||.|++|.+...++ ..+.+.++..|. ++.+.+++.                   ++.+.++.
T Consensus        82 gI~~~~~-~~~~~~~Gad~V~lg~~~l~~p-~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~  159 (253)
T 1thf_D           82 GIHDFET-ASELILRGADKVSINTAAVENP-SLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVE  159 (253)
T ss_dssp             SCCSHHH-HHHHHHTTCSEEEESHHHHHCT-HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHH
T ss_pred             CCCCHHH-HHHHHHcCCCEEEEChHHHhCh-HHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHH
Confidence            3556664 8888899999999999887777 666666777775 344555442                   45666677


Q ss_pred             hHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-C
Q 031554           61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-E  138 (157)
Q Consensus        61 ~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d  138 (157)
                      +.+  .+++.|+++++.++...+.+.   ++.++++++.. ++++.++|||+ ++++.++.++|||++++||++++.+ +
T Consensus       160 ~~~--~G~~~i~~~~~~~~g~~~g~~---~~~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~  233 (253)
T 1thf_D          160 VEK--RGAGEILLTSIDRDGTKSGYD---TEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREID  233 (253)
T ss_dssp             HHH--TTCSEEEEEETTTTTSCSCCC---HHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSC
T ss_pred             HHH--CCCCEEEEEeccCCCCCCCCC---HHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCC
Confidence            664  368999999888876666554   45556666653 78999999999 6999999999999999999999887 8


Q ss_pred             HHHHHHHHHH
Q 031554          139 PAHVISLMRK  148 (157)
Q Consensus       139 ~~~~~~~l~~  148 (157)
                      +.++.+.+++
T Consensus       234 ~~~~~~~l~~  243 (253)
T 1thf_D          234 VRELKEYLKK  243 (253)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877754

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=99.64  E-value=8.5e-16  Score=118.70  Aligned_cols=136  Identities=11%  Similarity=0.125  Sum_probs=107.2

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC------------------CCHHhHHhhH
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG------------------TSVEEVYPLV   62 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~------------------t~~~~~~~~~   62 (157)
                      |+.+|++ ++.+.++|||.|++|.+...++ ..+.+.++..|.++.+.+++.                  ++.+.++.+.
T Consensus        82 gi~~~~~-~~~~l~~Gad~V~lg~~~l~~p-~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~  159 (244)
T 2y88_A           82 GIRDDES-LAAALATGCARVNVGTAALENP-QWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLD  159 (244)
T ss_dssp             SCCSHHH-HHHHHHTTCSEEEECHHHHHCH-HHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHH
T ss_pred             CCCCHHH-HHHHHHcCCCEEEECchHhhCh-HHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHH
Confidence            5678885 8899999999999999988887 677777787787777777655                  5577777776


Q ss_pred             hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc---CCCEEEEcccccCCC-
Q 031554           63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA---GANCIVAGSSVFGAP-  137 (157)
Q Consensus        63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~---Gad~vV~GSai~~~~-  137 (157)
                      +  .++|.|+++++.+++.++.+.   ++.++++++. .+++|.++|||+ .+++.++.++   |||++++||++++.+ 
T Consensus       160 ~--~G~~~i~~~~~~~~~~~~g~~---~~~~~~l~~~-~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~  233 (244)
T 2y88_A          160 S--EGCSRFVVTDITKDGTLGGPN---LDLLAGVADR-TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRF  233 (244)
T ss_dssp             H--TTCCCEEEEETTTTTTTSCCC---HHHHHHHHTT-CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSS
T ss_pred             h--CCCCEEEEEecCCccccCCCC---HHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCc
Confidence            4  469999999999877766664   4455555554 478999999999 5999999999   999999999999876 


Q ss_pred             CHHHHHH
Q 031554          138 EPAHVIS  144 (157)
Q Consensus       138 d~~~~~~  144 (157)
                      ++.+..+
T Consensus       234 ~~~~~~~  240 (244)
T 2y88_A          234 TLPQALA  240 (244)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            4444443

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=99.63  E-value=3.1e-15  Score=117.74  Aligned_cols=141  Identities=17%  Similarity=0.190  Sum_probs=104.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      ++|++.+.++|+|+++++.-..++. .++++.++++|+.+...+.|.|+.+.++.+.+.  ..+++.+.++ .|..|...
T Consensus       112 ~~f~~~~~~aG~dgvii~dl~~ee~-~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~--a~gfiy~vs~-~g~TG~~~  187 (262)
T 2ekc_A          112 EKFCRLSREKGIDGFIVPDLPPEEA-EELKAVMKKYVLSFVPLGAPTSTRKRIKLICEA--ADEMTYFVSV-TGTTGARE  187 (262)
T ss_dssp             HHHHHHHHHTTCCEEECTTCCHHHH-HHHHHHHHHTTCEECCEECTTCCHHHHHHHHHH--CSSCEEEESS-CC------
T ss_pred             HHHHHHHHHcCCCEEEECCCCHHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh--CCCCEEEEec-CCccCCCC
Confidence            6889999999999999986555444 889999999999887778899999888888764  2345544444 45444432


Q ss_pred             --c-hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC--CCHHHHHHHHHHHHHH
Q 031554           86 --M-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA--PEPAHVISLMRKSVED  152 (157)
Q Consensus        86 --~-~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~--~d~~~~~~~l~~~~~~  152 (157)
                        . +...+.++++|+.. +.++.++|||+ ++++.. ..+|||++|+||+|.+.  +++.+.++++-+.++.
T Consensus       188 ~~~~~~~~~~v~~vr~~~-~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~~~~~~~~~~~~~~~~~~  258 (262)
T 2ekc_A          188 KLPYERIKKKVEEYRELC-DKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLAGQKKIEDLGNLVKELKE  258 (262)
T ss_dssp             ---CHHHHHHHHHHHHHC-CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcCcccHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhhhhhhHHHHHHHHHHHHH
Confidence              2 34567899999886 88999999998 999999 67899999999999975  4445555555555543

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=99.61  E-value=9.8e-15  Score=110.16  Aligned_cols=138  Identities=14%  Similarity=0.237  Sum_probs=102.3

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      ..++++.+.+.|++++.+|.+.. +. .+.++.+|+.   +..+|+.. ..|+. .++...+  .++|+| +   .|++.
T Consensus        24 ~~~~~~~~~~~G~~~iev~~~~~-~~-~~~i~~ir~~~~~~~~ig~~~-v~~~~-~~~~a~~--~Gad~i-v---~~~~~   93 (205)
T 1wa3_A           24 AKEKALAVFEGGVHLIEITFTVP-DA-DTVIKELSFLKEKGAIIGAGT-VTSVE-QCRKAVE--SGAEFI-V---SPHLD   93 (205)
T ss_dssp             HHHHHHHHHHTTCCEEEEETTST-TH-HHHHHHTHHHHHTTCEEEEES-CCSHH-HHHHHHH--HTCSEE-E---CSSCC
T ss_pred             HHHHHHHHHHCCCCEEEEeCCCh-hH-HHHHHHHHHHCCCCcEEEecc-cCCHH-HHHHHHH--cCCCEE-E---cCCCC
Confidence            45677888999999999999864 44 6778888876   45566532 13333 3444443  589999 4   46665


Q ss_pred             --------------------Cc-------------ccch---hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCC
Q 031554           82 --------------------GQ-------------KFMP---EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN  125 (157)
Q Consensus        82 --------------------gq-------------~~~~---~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad  125 (157)
                                          .+             ++.+   ..++.++++++..+++++.++|||+.+|+.++.++|||
T Consensus        94 ~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~l~~~~~~~pvia~GGI~~~~~~~~~~~Ga~  173 (205)
T 1wa3_A           94 EEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVL  173 (205)
T ss_dssp             HHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCS
T ss_pred             HHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHhCCCCcEEEcCCCCHHHHHHHHHCCCC
Confidence                                22             2222   24556777777666899999999999999999999999


Q ss_pred             EEEEcccccCCCC---HHHHHHHHHHHHHHH
Q 031554          126 CIVAGSSVFGAPE---PAHVISLMRKSVEDA  153 (157)
Q Consensus       126 ~vV~GSai~~~~d---~~~~~~~l~~~~~~~  153 (157)
                      ++++||++|+ +|   |.+.++++.+.++..
T Consensus       174 ~v~vGs~i~~-~d~~~~~~~~~~~~~~~~~~  203 (205)
T 1wa3_A          174 AVGVGSALVK-GTPDEVREKAKAFVEKIRGC  203 (205)
T ss_dssp             CEEECHHHHC-SCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEECccccC-CCHHHHHHHHHHHHHHHHhh
Confidence            9999999999 89   888888888877653

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=99.60  E-value=1.1e-14  Score=111.96  Aligned_cols=139  Identities=19%  Similarity=0.205  Sum_probs=104.1

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC---ceEEEec--C---------------CCCHHhHHh
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM---RPGVALK--P---------------GTSVEEVYP   60 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~---~~gl~l~--~---------------~t~~~~~~~   60 (157)
                      ++.+|... +.+.++|||.|+++.+...++ ..+.+.++++|.   .+++.++  |               .++.+.++.
T Consensus        85 ~i~~~~~~-~~~~~~Gad~V~i~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~  162 (253)
T 1h5y_A           85 GVRSLEDA-TTLFRAGADKVSVNTAAVRNP-QLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKE  162 (253)
T ss_dssp             SCCSHHHH-HHHHHHTCSEEEESHHHHHCT-HHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHH
T ss_pred             CCCCHHHH-HHHHHcCCCEEEEChHHhhCc-HHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHH
Confidence            35667654 788889999999998776667 666666777774   3555553  1               256677777


Q ss_pred             hHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-C
Q 031554           61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-E  138 (157)
Q Consensus        61 ~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d  138 (157)
                      +.+  .++|+|+++++.|++.+|.+.   ++.++++++.. +++|.++|||+ .+++.++.++|||++++||++++.+ +
T Consensus       163 ~~~--~G~d~i~~~~~~~~g~~~~~~---~~~i~~l~~~~-~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~  236 (253)
T 1h5y_A          163 VEE--LGAGEILLTSIDRDGTGLGYD---VELIRRVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLS  236 (253)
T ss_dssp             HHH--HTCSEEEEEETTTTTTCSCCC---HHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSC
T ss_pred             HHh--CCCCEEEEecccCCCCcCcCC---HHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCC
Confidence            664  369999999999876666654   45566666654 78999999999 5999999999999999999999875 5


Q ss_pred             HHHHHHHHH
Q 031554          139 PAHVISLMR  147 (157)
Q Consensus       139 ~~~~~~~l~  147 (157)
                      +.+..+.++
T Consensus       237 ~~~~~~~l~  245 (253)
T 1h5y_A          237 IAQVKRYLK  245 (253)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555554

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=99.60  E-value=1e-14  Score=125.13  Aligned_cols=137  Identities=15%  Similarity=0.102  Sum_probs=107.1

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCC---CCeEEEEeeeCCCCCcc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANP---VEMVLVMTVEPGFGGQK   84 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~---~d~vl~m~v~pG~~gq~   84 (157)
                      +++.+.+.|||.||+..+.  .+ ...++.+...+..+|++++  |+.+..+...   .+   +|||.++.+.|..+.+.
T Consensus        77 ~~dlA~~~gAdGVHLgq~d--l~-~~~ar~~lg~~~iiG~S~h--t~eea~~A~~---~G~~~aDYv~~Gpvf~T~tK~~  148 (540)
T 3nl6_A           77 RIDVAMAIGADGIHVGQDD--MP-IPMIRKLVGPDMVIGWSVG--FPEEVDELSK---MGPDMVDYIGVGTLFPTLTKKN  148 (540)
T ss_dssp             CSHHHHHTTCSEEEECTTS--SC-HHHHHHHHCTTSEEEEEEC--SHHHHHHHHH---TCC--CCEEEESCCSCCCCCC-
T ss_pred             cHHHHHHcCCCEEEEChhh--cC-HHHHHHHhCCCCEEEEECC--CHHHHHHHHH---cCCCCCCEEEEcCCCCCCCCCC
Confidence            5678889999999998874  34 5666667667889999995  5555555444   57   99999998888765544


Q ss_pred             c--chhHHHHHHHHHhh-----CCCCcEEEEcCCCHhhHHHHHH--------cCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           85 F--MPEMMDKVRSLRNR-----YPSLDIEVDGGLGPSTIAEAAS--------AGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        85 ~--~~~~~~ki~~l~~~-----~~~~~I~vdGGI~~~~i~~~~~--------~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      .  .+..++.++++++.     ..++++.+.|||+++|++++.+        +|+|+++++|+||+++||.+++++|++.
T Consensus       149 ~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~dp~~a~~~l~~~  228 (540)
T 3nl6_A          149 PKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGL  228 (540)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTCTTCEEEEESSCCTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTCTTHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCCCHHHHHHHHHhhcccccccCceEEEEeHHHhcCCCHHHHHHHHHHH
Confidence            3  22345556665553     2579999999999999999998        8999999999999999999999999998


Q ss_pred             HHH
Q 031554          150 VED  152 (157)
Q Consensus       150 ~~~  152 (157)
                      ++.
T Consensus       229 ~~~  231 (540)
T 3nl6_A          229 IDK  231 (540)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            875

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=99.58  E-value=3.2e-14  Score=111.30  Aligned_cols=141  Identities=16%  Similarity=0.191  Sum_probs=110.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      ..++|++.+.++|+|.+.++--..++. .++.+.++++|+.....+.|.|+.++++.+.+   ..+.++++-...|.+|.
T Consensus       104 G~e~F~~~~~~aGvdG~IipDLP~eE~-~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~---~a~gFiY~Vs~~GvTG~  179 (252)
T 3tha_A          104 GLEKFVKKAKSLGICALIVPELSFEES-DDLIKECERYNIALITLVSVTTPKERVKKLVK---HAKGFIYLLASIGITGT  179 (252)
T ss_dssp             CHHHHHHHHHHTTEEEEECTTCCGGGC-HHHHHHHHHTTCEECEEEETTSCHHHHHHHHT---TCCSCEEEECCSCSSSC
T ss_pred             hHHHHHHHHHHcCCCEEEeCCCCHHHH-HHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHH---hCCCeEEEEecCCCCCc
Confidence            357899999999999999997776777 89999999999999888999999999999984   44433444334576665


Q ss_pred             cc--chhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccC---CCCHHHHHHHHHHHH
Q 031554           84 KF--MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFG---APEPAHVISLMRKSV  150 (157)
Q Consensus        84 ~~--~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~---~~d~~~~~~~l~~~~  150 (157)
                      ..  .+...+.++++|+. .+.++.+.||| ++++++.+.+ +||++|+||++.+   ..++.+..+.+++.+
T Consensus       180 ~~~~~~~~~~~v~~vr~~-~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk~i~~~~~~~~~~~~~~~~  250 (252)
T 3tha_A          180 KSVEEAILQDKVKEIRSF-TNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVKCFKQGNLDIIMKDIEEIF  250 (252)
T ss_dssp             SHHHHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHHHTTSSCHHHHHHHHHHHC
T ss_pred             ccCCCHHHHHHHHHHHHh-cCCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHHHHHhcCHHHHHHHHHHHh
Confidence            42  22345678888887 47899999999 5899998865 6999999999874   346666666666543

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=99.58  E-value=9.4e-15  Score=112.21  Aligned_cols=135  Identities=21%  Similarity=0.308  Sum_probs=94.7

Q ss_pred             HHHHHhCCCCEEEE-ccc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-CCCC--
Q 031554            9 VEPLGKAGASGFTF-HVE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP-GFGG--   82 (157)
Q Consensus         9 i~~~~~~gad~v~v-h~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-G~~g--   82 (157)
                      ++++.++|||+|++ |.|  .+...+.+.++.++++|+.+.+.+++.++.+.+..+     ..++|.+-.+.. | +|  
T Consensus        75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~~e~~~~~~~-----~~~~i~~~~~~~iG-tG~~  148 (219)
T 2h6r_A           75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNINTSKAVAAL-----SPDCIAVEPPELIG-TGIP  148 (219)
T ss_dssp             HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSSHHHHHHTTT-----CCSEEEECCCC--------
T ss_pred             HHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHhC-----CCCEEEEEeccccc-cCCC
Confidence            88999999999999 543  222233788899999999999999877766554332     346665544444 5 35  


Q ss_pred             -cccchhHHH-HHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           83 -QKFMPEMMD-KVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        83 -q~~~~~~~~-ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                       +.+.++.++ .++.+|+...+.+|.+.|||+ +++++.+.+.|+|++++||++++++||.+.+++|++.
T Consensus       149 ~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l~~~  218 (219)
T 2h6r_A          149 VSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRELIKF  218 (219)
T ss_dssp             -------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHHCC-
T ss_pred             CccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHHHHHh
Confidence             666555233 344445554478999999999 5888889999999999999999999999999887643

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=99.52  E-value=1.3e-13  Score=109.04  Aligned_cols=138  Identities=23%  Similarity=0.326  Sum_probs=100.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      ++|++.+.++|+|++.+..-..++. .++++.++++|......+.|.++.++++.+...  ...++.+.+ ..|.+|..-
T Consensus       109 ~~f~~~~~~aG~dGviv~Dl~~ee~-~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~--~~gfiy~vs-~~G~TG~~~  184 (271)
T 1ujp_A          109 ERFFGLFKQAGATGVILPDLPPDED-PGLVRLAQEIGLETVFLLAPTSTDARIATVVRH--ATGFVYAVS-VTGVTGMRE  184 (271)
T ss_dssp             HHHHHHHHHHTCCEEECTTCCGGGC-HHHHHHHHHHTCEEECEECTTCCHHHHHHHHTT--CCSCEEEEC-C--------
T ss_pred             HHHHHHHHHcCCCEEEecCCCHHHH-HHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHh--CCCCEEEEe-cCcccCCCC
Confidence            6889999999999999986655555 899999999999877788999999988888853  334443333 345555432


Q ss_pred             --chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC----CHHHHHHHHHHHH
Q 031554           86 --MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP----EPAHVISLMRKSV  150 (157)
Q Consensus        86 --~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~----d~~~~~~~l~~~~  150 (157)
                        .+...+.++++|+.. ++++.+.|||+ ++++.++  +|||++|+||+|.+.-    ...+.++.+++.+
T Consensus       185 ~~~~~~~~~v~~vr~~~-~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~~~~~~~~~fv~~l~~~~  253 (271)
T 1ujp_A          185 RLPEEVKDLVRRIKART-ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEEGRSLAPLLQEIRQGL  253 (271)
T ss_dssp             ----CCHHHHHHHHTTC-CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHhhc-CCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcccchHHHHHHHHHHHHHHH
Confidence              233456788888874 89999999998 9999997  9999999999998642    3455555555544

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=99.48  E-value=5.7e-14  Score=112.45  Aligned_cols=132  Identities=17%  Similarity=0.243  Sum_probs=93.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCc---eEEEecCCCCHHhHHhhH------------hc--CCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMR---PGVALKPGTSVEEVYPLV------------EG--ANPV   68 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~---~gl~l~~~t~~~~~~~~~------------~~--~~~~   68 (157)
                      ..+++.+++.|+|++|+|.......+..+++.++++|.+   +++.+-++++-+.++++.            +.  ..++
T Consensus        93 ~~av~~~a~lGaD~vTVHa~~G~~~m~aa~e~a~~~~~~~~llaVtvLTS~s~~~l~~l~~~~~~e~V~~lA~~a~~~G~  172 (303)
T 3ru6_A           93 ADACEEVSKLGVDMINIHASAGKIAIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGL  172 (303)
T ss_dssp             HHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHTTSSSCCEEEEECSCTTCCHHHHHHHHSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Confidence            456788889999999999988777767788888777653   455444455544433321            00  0244


Q ss_pred             CeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCC
Q 031554           69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        69 d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      |.|..            .+.   .++++|+..++-.+.|.+||+++           |+.+++++|||.+|+||+||+++
T Consensus       173 dGvV~------------s~~---E~~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~a~  237 (303)
T 3ru6_A          173 DGMVC------------SVF---ESKKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNE  237 (303)
T ss_dssp             SEEEC------------CTT---THHHHHHHSCTTSEEEECCCCTTC--------CCSHHHHHHTTCSEEEECHHHHTSS
T ss_pred             CEEEE------------CHH---HHHHHHHhCCCccEEECCCcCcccCCcccccccCCHHHHHHcCCCEEEEChHHhCCC
Confidence            44322            111   14566666554447899999976           89999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 031554          138 EPAHVISLMRKSVED  152 (157)
Q Consensus       138 d~~~~~~~l~~~~~~  152 (157)
                      ||.++++.+++.++.
T Consensus       238 dp~~a~~~i~~~i~~  252 (303)
T 3ru6_A          238 NPRAVCEKILNKIHR  252 (303)
T ss_dssp             CHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987764

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=99.48  E-value=1.1e-12  Score=99.96  Aligned_cols=124  Identities=15%  Similarity=0.124  Sum_probs=95.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      +.++.+.++|||+++.+..    . ..+++.++++|....+-+  .|+-+..+.+.   .++|||-+   .|+   ... 
T Consensus        74 d~~~~A~~~GAd~v~~~~~----d-~~v~~~~~~~g~~~i~G~--~t~~e~~~A~~---~Gad~v~~---fpa---~~~-  136 (207)
T 2yw3_A           74 KEAEAALEAGAAFLVSPGL----L-EEVAALAQARGVPYLPGV--LTPTEVERALA---LGLSALKF---FPA---EPF-  136 (207)
T ss_dssp             HHHHHHHHHTCSEEEESSC----C-HHHHHHHHHHTCCEEEEE--CSHHHHHHHHH---TTCCEEEE---TTT---TTT-
T ss_pred             HHHHHHHHcCCCEEEcCCC----C-HHHHHHHHHhCCCEEecC--CCHHHHHHHHH---CCCCEEEE---ecC---ccc-
Confidence            5788999999999988743    2 578888899998765544  56666555555   68999976   452   111 


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCH---HHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEP---AHVISLMRKS  149 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~---~~~~~~l~~~  149 (157)
                       ..++.++++++..+++++.+.||||.+|+.++.++|++++++||+|++ +|+   .++++++.+.
T Consensus       137 -gG~~~lk~l~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~~  200 (207)
T 2yw3_A          137 -QGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKAL  200 (207)
T ss_dssp             -THHHHHHHHHHHCTTCEEEEBSSCCGGGHHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHHH
Confidence             135667888888789999999999999999999999999999999998 885   4555555443

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=99.47  E-value=3.2e-12  Score=100.62  Aligned_cols=143  Identities=17%  Similarity=0.157  Sum_probs=100.7

Q ss_pred             cChHH---HHHHHHhC-CCCEEEEccc--C---CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCe
Q 031554            3 TNPLD---YVEPLGKA-GASGFTFHVE--I---SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         3 ~~p~~---~i~~~~~~-gad~v~vh~e--~---~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~   70 (157)
                      .+++.   |.+.+.++ |++++.+..-  .   .++. .++++.++++   |+.++....+ |+ +.++...+  ...|+
T Consensus        76 ~~~~~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e~-~~~~~~a~~~~~~g~~vi~~~~~-~~-~~a~~~~~--~gad~  150 (264)
T 1xm3_A           76 STAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDP-VETLKASEQLLEEGFIVLPYTSD-DV-VLARKLEE--LGVHA  150 (264)
T ss_dssp             SSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCH-HHHHHHHHHHHHTTCCEEEEECS-CH-HHHHHHHH--HTCSC
T ss_pred             CCHHHHHHHHHHHHHcCCCCeEEEeecCCCcccccch-HHHHHHHHHHHCCCeEEEEEcCC-CH-HHHHHHHH--hCCCE
Confidence            45554   67777777 6677765432  2   1334 6889999998   9999855443 32 44555544  36899


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      |..++...|.......   .+.++++++. .++++.++|||+ ++++.++.++|||++++||+|++++||.+.+++|++.
T Consensus       151 v~~~~~~~Gt~~~~~~---~~~l~~i~~~-~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a~dp~~~~~~l~~~  226 (264)
T 1xm3_A          151 IMPGASPIGSGQGILN---PLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLA  226 (264)
T ss_dssp             BEECSSSTTCCCCCSC---HHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred             EEECCcccCCCCCCCC---HHHHHHHHhc-CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHHH
Confidence            8544333332211112   4456666665 489999999997 8999999999999999999999999999999999998


Q ss_pred             HHHHh
Q 031554          150 VEDAQ  154 (157)
Q Consensus       150 ~~~~~  154 (157)
                      ++..+
T Consensus       227 v~~~~  231 (264)
T 1xm3_A          227 VEAGR  231 (264)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87655

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=99.46  E-value=1.3e-12  Score=103.29  Aligned_cols=132  Identities=16%  Similarity=0.183  Sum_probs=99.7

Q ss_pred             HHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554            9 VEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP   87 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~   87 (157)
                      ++.+.++|||.|+++....+ ..+.++++.+++.|+.+.+.++  |+ +.++..++  .++|+|.+-   + .....|..
T Consensus       128 v~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~--t~-ee~~~A~~--~Gad~IGv~---~-r~l~~~~~  198 (272)
T 3qja_A          128 IHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVH--TE-QEADRALK--AGAKVIGVN---A-RDLMTLDV  198 (272)
T ss_dssp             HHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEES--SH-HHHHHHHH--HTCSEEEEE---S-BCTTTCCB
T ss_pred             HHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcC--CH-HHHHHHHH--CCCCEEEEC---C-Cccccccc
Confidence            78889999999999654333 3336788999999999888774  43 33433333  479998653   2 22223322


Q ss_pred             hHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554           88 EMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        88 ~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                       .++.++++++..+ ++++.+.|||+ ++++..+.++|||++++||+|++++||.+++++|.+..
T Consensus       199 -dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l~~~~  262 (272)
T 3qja_A          199 -DRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTAG  262 (272)
T ss_dssp             -CTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHTTT
T ss_pred             -CHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHhhh
Confidence             2456677777665 78999999999 99999999999999999999999999999999987653

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=99.42  E-value=9e-14  Score=110.74  Aligned_cols=140  Identities=14%  Similarity=0.158  Sum_probs=98.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC----
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG----   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~----   81 (157)
                      .+.++.+.++|||+|..+...  .+ .++++.+++++..+.+.+...|+.+.....-   .++|+|.+.+- .|++    
T Consensus        90 ~~~~~~~~~aGad~v~~~~~~--~~-~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~---~Gad~I~v~G~-~~~g~~~e  162 (297)
T 2zbt_A           90 FVEAMILEAIGVDFIDESEVL--TP-ADEEHHIDKWKFKVPFVCGARNLGEALRRIA---EGAAMIRTKGE-AGTGNVVE  162 (297)
T ss_dssp             HHHHHHHHHTTCSEEEEETTS--CC-SCSSCCCCGGGCSSCEEEEESSHHHHHHHHH---TTCSEEEECCC-SSSCCTHH
T ss_pred             HHHHHHHHHCCCCEEeeeCCC--Ch-HHHHHHHHHhCCCceEEeecCCHHHHHHHHH---cCCCEEEEccc-ccCcchHH
Confidence            467888999999999666432  22 3455666665444555544456666555444   68999866421 1111    


Q ss_pred             -------------------Ccc------cchhHHHHHHHHHhhCCCCcEE--EEcCC-CHhhHHHHHHcCCCEEEEcccc
Q 031554           82 -------------------GQK------FMPEMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        82 -------------------gq~------~~~~~~~ki~~l~~~~~~~~I~--vdGGI-~~~~i~~~~~~Gad~vV~GSai  133 (157)
                                         +..      ..+..+++++++++.. ++++.  ++||| |.+++.++.++|||++++||++
T Consensus       163 ~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~-~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai  241 (297)
T 2zbt_A          163 AVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHG-RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGI  241 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHS-SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGG
T ss_pred             HHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhc-CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHH
Confidence                               111      1223467788888763 45555  99999 8999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHH
Q 031554          134 FGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus       134 ~~~~d~~~~~~~l~~~~~~~  153 (157)
                      |+++||.+.++.|++.+++.
T Consensus       242 ~~~~dp~~~~~~l~~~i~~~  261 (297)
T 2zbt_A          242 FKSGDPRKRARAIVRAVAHY  261 (297)
T ss_dssp             GGSSCHHHHHHHHHHHHHTT
T ss_pred             hCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999887654

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=99.41  E-value=3.7e-12  Score=102.75  Aligned_cols=122  Identities=16%  Similarity=0.124  Sum_probs=95.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-Ccc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQK   84 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq~   84 (157)
                      .++++.+.++|+|.|++|...   + .+++++++++|++++..+  .++.+....+.   .++|+|++.+..+|.. |+ 
T Consensus        86 ~~~~~~~~~~g~d~V~~~~g~---p-~~~~~~l~~~gi~vi~~v--~t~~~a~~~~~---~GaD~i~v~g~~~GG~~G~-  155 (328)
T 2gjl_A           86 AEYRAAIIEAGIRVVETAGND---P-GEHIAEFRRHGVKVIHKC--TAVRHALKAER---LGVDAVSIDGFECAGHPGE-  155 (328)
T ss_dssp             HHHHHHHHHTTCCEEEEEESC---C-HHHHHHHHHTTCEEEEEE--SSHHHHHHHHH---TTCSEEEEECTTCSBCCCS-
T ss_pred             HHHHHHHHhcCCCEEEEcCCC---c-HHHHHHHHHcCCCEEeeC--CCHHHHHHHHH---cCCCEEEEECCCCCcCCCC-
Confidence            478999999999999999863   4 688999999998888665  34444444444   6899999987665422 32 


Q ss_pred             cchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCC
Q 031554           85 FMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPE  138 (157)
Q Consensus        85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d  138 (157)
                      +....++.++++++.. +++|.++||| +.+++.++.+.|||++.+||+++..++
T Consensus       156 ~~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~~~~e  209 (328)
T 2gjl_A          156 DDIPGLVLLPAAANRL-RVPIIASGGFADGRGLVAALALGADAINMGTRFLATRE  209 (328)
T ss_dssp             SCCCHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTSSS
T ss_pred             ccccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCcc
Confidence            2335667788887754 7899999999 589999999999999999999997655

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=99.40  E-value=3.2e-14  Score=108.92  Aligned_cols=125  Identities=14%  Similarity=0.172  Sum_probs=79.4

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH-----HhHHhhHhcCCCCCeEEEEeeeC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV-----EEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~-----~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      .+..+++.+++.|||++|+|.....+.+..+++.++    ..++++.+-|+.     +.+..+.          -| .++
T Consensus        73 T~~~~v~~~~~~GaD~vTvh~~~G~~~l~~~~~~~~----~~~~~V~~lts~~~~l~~~v~~~a----------~~-~e~  137 (213)
T 1vqt_A           73 TVERSIKSWDHPAIIGFTVHSCAGYESVERALSATD----KHVFVVVKLTSMEGSLEDYMDRIE----------KL-NKL  137 (213)
T ss_dssp             HHHHHHHHHCCTTEEEEEEEGGGCHHHHHHHHHHCS----SEEEEECCCTTSCCCHHHHHHHHH----------HH-HHH
T ss_pred             HHHHHHHHHHHCCCCEEEEeccCCHHHHHHHHHhcC----CCeEEEEEeCCCCHHHHHHHHHHH----------HH-hcC
Confidence            456788899999999999999876554344433332    334444333332     2222221          11 122


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhh----------HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST----------IAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~----------i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      |.+   +.... +.++++|+..+. + .+++||++++          ..+ +++|||++|+||+||+++||.++++.+++
T Consensus       138 G~d---vV~~~-~~~~~ir~~~~~-~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a~dP~~aa~~i~~  210 (213)
T 1vqt_A          138 GCD---FVLPG-PWAKALREKIKG-K-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVLGREIYLSENPREKIKRIKE  210 (213)
T ss_dssp             TCE---EECCH-HHHHHHTTTCCS-C-EEECCBC---------CCBCHHH-HTTTCSEEEESHHHHTSSCHHHHHHHHTC
T ss_pred             CCE---EEEcH-HHHHHHHHHCCC-C-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEEChhhcCCCCHHHHHHHHHH
Confidence            322   11111 466777777654 4 8999999876          578 89999999999999999999999999886


Q ss_pred             HH
Q 031554          149 SV  150 (157)
Q Consensus       149 ~~  150 (157)
                      .+
T Consensus       211 ~i  212 (213)
T 1vqt_A          211 MR  212 (213)
T ss_dssp             --
T ss_pred             Hh
Confidence            54

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=99.38  E-value=2.1e-11  Score=94.33  Aligned_cols=136  Identities=18%  Similarity=0.232  Sum_probs=99.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-
Q 031554            7 DYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-   83 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-   83 (157)
                      ..++.+.++|||.|.+-....  +..+.++++.++++|+.++..++  | .+.++...+  .++|+|.+ + .-|+... 
T Consensus        92 ~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~--t-~eea~~a~~--~Gad~Ig~-~-~~g~t~~~  164 (232)
T 3igs_A           92 DDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCS--S-VDDGLACQR--LGADIIGT-T-MSGYTTPD  164 (232)
T ss_dssp             HHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECC--S-HHHHHHHHH--TTCSEEEC-T-TTTSSSSS
T ss_pred             HHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCC--C-HHHHHHHHh--CCCCEEEE-c-CccCCCCC
Confidence            467889999999998865431  23338999999999998887763  3 444444443  58999953 1 1233221 


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +.....++.++++++.  ++++.+.|||+ ++++.++.++|||++++||+|++   |....++|.+.++...
T Consensus       165 ~~~~~~~~~i~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~---p~~~~~~~~~~i~~~~  231 (232)
T 3igs_A          165 TPEEPDLPLVKALHDA--GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR---LEHICGWYNDALKKAA  231 (232)
T ss_dssp             CCSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC---HHHHHHHHHHHHHHhc
Confidence            1122356677777775  89999999995 99999999999999999999995   7888888888876643

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=99.37  E-value=7.2e-12  Score=96.55  Aligned_cols=126  Identities=9%  Similarity=0.125  Sum_probs=94.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      +.++.+.++|||+|+.+..    . .++++..+++|....+-+  .|+-|..+.+.   .++|||-+   .|+   +.  
T Consensus        89 d~~~~A~~aGAd~v~~p~~----d-~~v~~~~~~~g~~~i~G~--~t~~e~~~A~~---~Gad~vk~---FPa---~~--  150 (225)
T 1mxs_A           89 SMFAAVEAAGAQFVVTPGI----T-EDILEAGVDSEIPLLPGI--STPSEIMMGYA---LGYRRFKL---FPA---EI--  150 (225)
T ss_dssp             HHHHHHHHHTCSSEECSSC----C-HHHHHHHHHCSSCEECEE--CSHHHHHHHHT---TTCCEEEE---TTH---HH--
T ss_pred             HHHHHHHHCCCCEEEeCCC----C-HHHHHHHHHhCCCEEEee--CCHHHHHHHHH---CCCCEEEE---ccC---cc--
Confidence            5788999999999998753    2 588889999987654433  56655555554   68999977   451   11  


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCC-----CCHHHHHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA-----PEPAHVISLMRKSVE  151 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~  151 (157)
                      ...++.++++++..+++++.+.||||++|+.++.+ +|++++. ||+|+++     .|+.+-.+..++.++
T Consensus       151 ~~G~~~lk~i~~~~~~ipvvaiGGI~~~N~~~~l~~~Ga~~v~-gSai~~~~~i~~~~~~~i~~~a~~~~~  220 (225)
T 1mxs_A          151 SGGVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVG-TTWMLDSSWIKNGDWARIEACSAEAIA  220 (225)
T ss_dssp             HTHHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEE-ECTTSCHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHhhCCCCeEEEECCCCHHHHHHHHhccCCEEEE-EchhcCchhhccCCHHHHHHHHHHHHH
Confidence            01367788888888899999999999999999999 7999999 9999974     455544444444443

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=99.32  E-value=1.8e-11  Score=93.64  Aligned_cols=112  Identities=13%  Similarity=0.138  Sum_probs=88.5

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      +.++.+.++|||+++.+..    . .++++..+++|....+-+  .|+-|..+.+.   .++|||-+   .|+   +.. 
T Consensus        79 d~~~~A~~aGAd~v~~p~~----d-~~v~~~~~~~g~~~i~G~--~t~~e~~~A~~---~Gad~v~~---Fpa---~~~-  141 (214)
T 1wbh_A           79 QQLAEVTEAGAQFAISPGL----T-EPLLKAATEGTIPLIPGI--STVSELMLGMD---YGLKEFKF---FPA---EAN-  141 (214)
T ss_dssp             HHHHHHHHHTCSCEEESSC----C-HHHHHHHHHSSSCEEEEE--SSHHHHHHHHH---TTCCEEEE---TTT---TTT-
T ss_pred             HHHHHHHHcCCCEEEcCCC----C-HHHHHHHHHhCCCEEEec--CCHHHHHHHHH---CCCCEEEE---ecC---ccc-
Confidence            5788999999999998853    2 588899999997765544  56666555555   78999977   562   111 


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccCCC
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAP  137 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~~~  137 (157)
                       ...+.++++++..+++++.+.||||++|++++.++ |++++. ||+|++++
T Consensus       142 -gG~~~lk~i~~~~~~ipvvaiGGI~~~n~~~~l~agg~~~v~-gS~i~~~~  191 (214)
T 1wbh_A          142 -GGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIG-GSWLVPAD  191 (214)
T ss_dssp             -THHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEE-EGGGSCHH
T ss_pred             -cCHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcCCCeEEE-eccccChh
Confidence             13667888888888999999999999999999999 999988 99999754

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=99.32  E-value=4.8e-11  Score=91.86  Aligned_cols=126  Identities=16%  Similarity=0.143  Sum_probs=94.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      +.++.+.++|||+|+.+..    . .++++.+|++|...-+-+  .|+-+..+.+.   .++|+|-+   .|+   +.. 
T Consensus        80 d~~~~A~~aGAd~v~~p~~----d-~~v~~~ar~~g~~~i~Gv--~t~~e~~~A~~---~Gad~vk~---Fpa---~~~-  142 (224)
T 1vhc_A           80 EQVVLAKSSGADFVVTPGL----N-PKIVKLCQDLNFPITPGV--NNPMAIEIALE---MGISAVKF---FPA---EAS-  142 (224)
T ss_dssp             HHHHHHHHHTCSEEECSSC----C-HHHHHHHHHTTCCEECEE--CSHHHHHHHHH---TTCCEEEE---TTT---TTT-
T ss_pred             HHHHHHHHCCCCEEEECCC----C-HHHHHHHHHhCCCEEecc--CCHHHHHHHHH---CCCCEEEE---eeC---ccc-
Confidence            5788999999999987743    2 578889999887663333  46666555555   68999977   562   111 


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccCC-----CCHHHHHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGA-----PEPAHVISLMRKSVE  151 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~  151 (157)
                       ..++.++++++..+++++.+.||||++|++++.++ |++++. ||+|+++     .|+.+..+..++.++
T Consensus       143 -gG~~~lk~l~~~~~~ipvvaiGGI~~~N~~~~l~agga~~v~-gS~i~~~~~i~~~~~~~i~~~a~~~~~  211 (224)
T 1vhc_A          143 -GGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACG-GSWFVEKKLIQSNNWDEIGRLVREVID  211 (224)
T ss_dssp             -THHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEE-ECGGGCHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHhhCCCCeEEEECCcCHHHHHHHHhcCCCEEEE-EchhcCcchhccCCHHHHHHHHHHHHH
Confidence             13677888888888999999999999999999999 999888 9999974     566555555444433

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=99.31  E-value=6.3e-11  Score=91.45  Aligned_cols=132  Identities=22%  Similarity=0.315  Sum_probs=94.5

Q ss_pred             HHHHHHHhCCCCEEEEcccC--CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-
Q 031554            7 DYVEPLGKAGASGFTFHVEI--SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-   83 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-   83 (157)
                      +.++.+.++|||.|.+-.-.  .+..+.++++.++++|+.++..++  | .+.++...+  .++|+|.+ + .-|+... 
T Consensus        92 ~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~--t-~eea~~a~~--~Gad~Ig~-~-~~g~t~~~  164 (229)
T 3q58_A           92 QDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCS--T-VNEGISCHQ--KGIEFIGT-T-LSGYTGPI  164 (229)
T ss_dssp             HHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECS--S-HHHHHHHHH--TTCSEEEC-T-TTTSSSSC
T ss_pred             HHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecC--C-HHHHHHHHh--CCCCEEEe-c-CccCCCCC
Confidence            46788999999999876543  123338999999999998887763  4 444444443  68999953 1 1233221 


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      ......++.++++++.  ++++.+.|||+ ++++.++.++|||++++||+|++   |....++|.+.+
T Consensus       165 ~~~~~~~~li~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~---p~~~~~~f~~~~  227 (229)
T 3q58_A          165 TPVEPDLAMVTQLSHA--GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR---IEHICQWFSHAV  227 (229)
T ss_dssp             CCSSCCHHHHHHHHTT--TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcC---hHHHHHHHHHHH
Confidence            1122346777777765  89999999995 99999999999999999999995   566666666554

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=99.31  E-value=3.1e-11  Score=97.52  Aligned_cols=120  Identities=17%  Similarity=0.191  Sum_probs=95.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-Ccc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQK   84 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq~   84 (157)
                      .+.++.+.++|+|.|++|...   + .++++++++.|.+++..+   ++.+.++...+  .++|+|++.+..+|.. |+.
T Consensus        92 ~~~~~~~~~~g~d~V~l~~g~---p-~~~~~~l~~~g~~v~~~v---~s~~~a~~a~~--~GaD~i~v~g~~~GG~~G~~  162 (326)
T 3bo9_A           92 DDLVKVCIEEKVPVVTFGAGN---P-TKYIRELKENGTKVIPVV---ASDSLARMVER--AGADAVIAEGMESGGHIGEV  162 (326)
T ss_dssp             HHHHHHHHHTTCSEEEEESSC---C-HHHHHHHHHTTCEEEEEE---SSHHHHHHHHH--TTCSCEEEECTTSSEECCSS
T ss_pred             HHHHHHHHHCCCCEEEECCCC---c-HHHHHHHHHcCCcEEEEc---CCHHHHHHHHH--cCCCEEEEECCCCCccCCCc
Confidence            678899999999999999873   5 688999999999988877   34555555554  5799999987665532 432


Q ss_pred             cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCC
Q 031554           85 FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPE  138 (157)
Q Consensus        85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d  138 (157)
                         ..++.++++++.. ++++.++|||+ .+++..+..+|||++.+||+++..++
T Consensus       163 ---~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e  213 (326)
T 3bo9_A          163 ---TTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVE  213 (326)
T ss_dssp             ---CHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSS
T ss_pred             ---cHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCcc
Confidence               3566677777653 78999999998 99999999999999999999987654

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=99.27  E-value=8.3e-11  Score=96.31  Aligned_cols=123  Identities=19%  Similarity=0.301  Sum_probs=93.7

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-   84 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~-   84 (157)
                      ...++.+.+.|+|+|++|...+  + .++++.+++.|+.++..++  |+ +.++...+  .++|+|.+-+  |+++|+. 
T Consensus       112 ~~~~~~~~~~g~~~V~~~~g~~--~-~~~i~~~~~~g~~v~~~v~--t~-~~a~~a~~--~GaD~i~v~g--~~~GGh~g  181 (369)
T 3bw2_A          112 DAKLAVLLDDPVPVVSFHFGVP--D-REVIARLRRAGTLTLVTAT--TP-EEARAVEA--AGADAVIAQG--VEAGGHQG  181 (369)
T ss_dssp             HHHHHHHHHSCCSEEEEESSCC--C-HHHHHHHHHTTCEEEEEES--SH-HHHHHHHH--TTCSEEEEEC--TTCSEECC
T ss_pred             HHHHHHHHhcCCCEEEEeCCCC--c-HHHHHHHHHCCCeEEEECC--CH-HHHHHHHH--cCCCEEEEeC--CCcCCcCC
Confidence            6778999999999999998764  2 5889999999999888773  43 33433333  6899998843  3233321 


Q ss_pred             -cc---------hhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCH
Q 031554           85 -FM---------PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEP  139 (157)
Q Consensus        85 -~~---------~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~  139 (157)
                       +.         ...++.++++++.. +++|.++||| +.+++..+.+.|||++.+||+++..+++
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~i~~~~-~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~  246 (369)
T 3bw2_A          182 THRDSSEDDGAGIGLLSLLAQVREAV-DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDES  246 (369)
T ss_dssp             CSSCCGGGTTCCCCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTC
T ss_pred             CcccccccccccccHHHHHHHHHHhc-CceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccc
Confidence             11         12367778887764 7899999999 8999999999999999999999987665

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=99.26  E-value=2.5e-10  Score=90.17  Aligned_cols=131  Identities=14%  Similarity=0.099  Sum_probs=98.5

Q ss_pred             HHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      .+..+..+|||.|.+.....+. .+.++++.+++.|+.+-+.++  |.. .++..++  .++|+|.+-..+    ...|.
T Consensus       134 qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh--~~e-El~~A~~--~ga~iIGinnr~----l~t~~  204 (272)
T 3tsm_A          134 QVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVH--DEA-EMERALK--LSSRLLGVNNRN----LRSFE  204 (272)
T ss_dssp             HHHHHHHTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEEC--SHH-HHHHHTT--SCCSEEEEECBC----TTTCC
T ss_pred             HHHHHHHcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeC--CHH-HHHHHHh--cCCCEEEECCCC----CccCC
Confidence            5777899999999999766653 347889999999999888884  443 3444433  578988443222    12232


Q ss_pred             hhHHHHHHHHHhhCC-CCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           87 PEMMDKVRSLRNRYP-SLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~-~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      . .++...++.+..| ++++.+-||| +++++..+.++|||+|++||+|++++||.+++++|..
T Consensus       205 ~-dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~~~l~~  267 (272)
T 3tsm_A          205 V-NLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRALLT  267 (272)
T ss_dssp             B-CTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHHHHHHH
T ss_pred             C-ChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHHHHHHh
Confidence            2 2455566666654 6899999999 6999999999999999999999999999999988764

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=99.26  E-value=2.7e-11  Score=92.77  Aligned_cols=127  Identities=17%  Similarity=0.296  Sum_probs=84.9

Q ss_pred             HHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEecCCCC--------HHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            8 YVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTS--------VEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l~~~t~--------~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      +.+.+.+. +|++|+|.-.. .+.+..+     +.+..+ +.+. +++        +..+.++.+- .++|.+..    +
T Consensus        69 a~~~~~~~-ad~vTvh~~~G~~~~~~~~-----~~~~~v-~vLt-s~s~~~~~~~~v~~~a~~a~~-~G~~GvV~----s  135 (215)
T 3ve9_A           69 IVDELKDI-TNSFIAHAFVGVEGSLASL-----SQRVDL-FLVL-SMSHPGWNDAFYPYLREVARR-VNPKGFVA----P  135 (215)
T ss_dssp             HHHHHTTT-CSEEEEEGGGCTTTTHHHH-----HHHSEE-EEEC-CCSSTTCCGGGHHHHHHHHHH-HCCSEEEC----C
T ss_pred             HHHHHHHh-hheEEEeCCCCcHHHHHhH-----hcCCCE-EEEE-ecCCcchHHHHHHHHHHHHHH-cCCCceee----C
Confidence            45778889 99999998765 5553443     223322 2222 221        1222222211 24555532    1


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN  156 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~--~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~~  156 (157)
                         +  ..+   +.++++|+..++ .+.+++||+++  +..+..++|+|.+|+||+||+++||.++++.+++.++++|.+
T Consensus       136 ---a--t~~---~e~~~ir~~~~~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a~dp~~a~~~i~~~i~~~~~~  206 (215)
T 3ve9_A          136 ---A--TRP---SMISRVKGDFPD-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQEEVLSS  206 (215)
T ss_dssp             ---T--TSH---HHHHHHHHHCTT-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHHHHC--
T ss_pred             ---C--CCH---HHHHHHHHhCCC-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence               1  112   245666777677 68899999998  899999999999999999999999999999999999987753

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.24  E-value=5.7e-12  Score=95.80  Aligned_cols=116  Identities=9%  Similarity=0.080  Sum_probs=81.4

Q ss_pred             HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC----Ccc
Q 031554            9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG----GQK   84 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~----gq~   84 (157)
                      ++.+.++|+|+|++..+..+.. .       .++..+|+.+.  |+.+ +....   .++|||.+-.+.|..+    +..
T Consensus        63 ~~~A~~~gadgvhl~~~~~~~~-~-------~~~~~ig~s~~--t~~e-~~~A~---~GaDyv~~g~vf~t~sk~~~~~~  128 (210)
T 3ceu_A           63 FYLKEEFNLMGIHLNARNPSEP-H-------DYAGHVSCSCH--SVEE-VKNRK---HFYDYVFMSPIYDSISKVNYYST  128 (210)
T ss_dssp             TTHHHHTTCSEEECCSSSCSCC-T-------TCCSEEEEEEC--SHHH-HHTTG---GGSSEEEECCCC---------CC
T ss_pred             HHHHHHcCCCEEEECccccccc-c-------ccCCEEEEecC--CHHH-HHHHh---hCCCEEEECCcCCCCCCCCCCCC
Confidence            4678899999999887654433 1       14777777774  4433 33222   2699998865544211    122


Q ss_pred             cchhHHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHH
Q 031554           85 FMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAH  141 (157)
Q Consensus        85 ~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~  141 (157)
                      +   .++.++++++.. .++++.+.|||+++|+.++.++||+++.+||+|++.+|+.+
T Consensus       129 ~---g~~~l~~~~~~~~~~iPviaiGGI~~~nv~~~~~~Ga~gVav~s~i~~~~d~~~  183 (210)
T 3ceu_A          129 Y---TAEELREAQKAKIIDSKVMALGGINEDNLLEIKDFGFGGAVVLGDLWNKFDACL  183 (210)
T ss_dssp             C---CHHHHHHHHHTTCSSTTEEEESSCCTTTHHHHHHTTCSEEEESHHHHTTCCTTT
T ss_pred             C---CHHHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhCCCEEEEhHHhHcCCCHHH
Confidence            3   345566666654 57899999999999999999999999999999999888853

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=99.22  E-value=1.6e-10  Score=89.34  Aligned_cols=136  Identities=17%  Similarity=0.134  Sum_probs=96.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC---CceEEEecC-----------------CCCHHhHHhhHhcC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG---MRPGVALKP-----------------GTSVEEVYPLVEGA   65 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g---~~~gl~l~~-----------------~t~~~~~~~~~~~~   65 (157)
                      .+.++.+.++|||.|++......++ ..+-+..+..|   +.+++.+..                 .++.+.++.+.+  
T Consensus        87 ~~~~~~~~~~Gad~V~lg~~~l~~p-~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~--  163 (252)
T 1ka9_F           87 LEDARKLLLSGADKVSVNSAAVRRP-ELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVE--  163 (252)
T ss_dssp             HHHHHHHHHHTCSEEEECHHHHHCT-HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHH--
T ss_pred             HHHHHHHHHcCCCEEEEChHHHhCc-HHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHH--
Confidence            4578888899999999998766666 44444445555   345666531                 133555565554  


Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-CHHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-EPAHVI  143 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~  143 (157)
                      .+++.|++.++...  |....+ .++.++++++.. ++++.+.|||+ ++++.++.++|||++++||++++.+ ++.++.
T Consensus       164 ~G~~~i~~~~~~~~--g~~~g~-~~~~i~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~  239 (252)
T 1ka9_F          164 LGAGEILLTSMDRD--GTKEGY-DLRLTRMVAEAV-GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLK  239 (252)
T ss_dssp             HTCCEEEEEETTTT--TTCSCC-CHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHH
T ss_pred             cCCCEEEEecccCC--CCcCCC-CHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHH
Confidence            36888887654432  222221 367777777764 78999999999 6999999999999999999999876 888877


Q ss_pred             HHHHH
Q 031554          144 SLMRK  148 (157)
Q Consensus       144 ~~l~~  148 (157)
                      +.+++
T Consensus       240 ~~l~~  244 (252)
T 1ka9_F          240 RYLAE  244 (252)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76653

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=99.22  E-value=7.7e-11  Score=92.28  Aligned_cols=132  Identities=14%  Similarity=0.168  Sum_probs=94.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +|. .+..+.++|||.|++.....+..+.++++.++..|+.+-+.++  +..| +...++  ...|+|-+-..+..    
T Consensus       117 d~~-qi~~a~~~GAD~VlL~~~~l~~~l~~l~~~a~~lGl~~lvev~--~~~E-~~~a~~--~gad~IGvn~~~l~----  186 (254)
T 1vc4_A          117 DPF-MLEEARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVH--TERE-LEIALE--AGAEVLGINNRDLA----  186 (254)
T ss_dssp             SHH-HHHHHHHTTCSEEEEEHHHHGGGHHHHHHHHHHHTCEEEEEEC--SHHH-HHHHHH--HTCSEEEEESBCTT----
T ss_pred             CHH-HHHHHHHcCCCEEEECccchHHHHHHHHHHHHHCCCeEEEEEC--CHHH-HHHHHH--cCCCEEEEccccCc----
Confidence            444 4677899999999998654434448888999999999887775  3333 333333  35788855433321    


Q ss_pred             ccchhHHHHHHHHHhhCC----CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           84 KFMPEMMDKVRSLRNRYP----SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      .|. ..++...++++..+    ++++.+-|||+ ++++..+.+ |+|++++||+|++++||.+++++|.
T Consensus       187 ~~~-~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~~d~~~~~~~l~  253 (254)
T 1vc4_A          187 TLH-INLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRAPDLEAALRELV  253 (254)
T ss_dssp             TCC-BCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTSSCHHHHHHHHH
T ss_pred             CCC-CCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCCCCHHHHHHHHh
Confidence            121 12333444444333    67899999999 999999999 9999999999999999999998874

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=99.21  E-value=1.6e-10  Score=92.64  Aligned_cols=142  Identities=15%  Similarity=0.207  Sum_probs=95.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCC--c------chHHHHHHHHHHcCCceEEEecCC--------CC---H-HhHHhhHhcCC
Q 031554            7 DYVEPLGKAGASGFTFHVEIS--K------DNWQELVQRIKSKGMRPGVALKPG--------TS---V-EEVYPLVEGAN   66 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~--~------~~~~~~i~~ir~~g~~~gl~l~~~--------t~---~-~~~~~~~~~~~   66 (157)
                      ..++.+.+.|||+|.++.-..  +      ..+.++.+.++++|+.+-+.+.+.        +|   + +..+...+  -
T Consensus       112 ~~ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~--l  189 (304)
T 1to3_A          112 INAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGD--S  189 (304)
T ss_dssp             CCHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTT--S
T ss_pred             hhHHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHH--c
Confidence            357889999999999663221  1      234778888899999888866421        12   1 22333333  3


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCCH----hhHHHHHHcCCCEEEEcccccCC----C
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLGP----STIAEAASAGANCIVAGSSVFGA----P  137 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~~----~~i~~~~~~Gad~vV~GSai~~~----~  137 (157)
                      ++|++-   ++|+..+.. .++.+.++-+.....-..+ |.+.||++.    ++++.+.++|+++|++||+||++    +
T Consensus       190 GaD~iK---v~~~~~~~g-~~~~~~~vv~~~~~~~~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~~~~~~  265 (304)
T 1to3_A          190 GADLYK---VEMPLYGKG-ARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSSVIGLP  265 (304)
T ss_dssp             SCSEEE---ECCGGGGCS-CHHHHHHHHHHHHHTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGGGTTCS
T ss_pred             CCCEEE---eCCCcCCCC-CHHHHHHHHHhccccCCCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEEehHHhCccccCC
Confidence            789874   455321111 2233333322222222578 999999998    56999999999999999999999    9


Q ss_pred             CHHHHH--------HHHHHHHHHHh
Q 031554          138 EPAHVI--------SLMRKSVEDAQ  154 (157)
Q Consensus       138 d~~~~~--------~~l~~~~~~~~  154 (157)
                      ||.+.+        +.|++++.+..
T Consensus       266 dp~~~~~~~~~~~~~~l~~iv~~~~  290 (304)
T 1to3_A          266 DTELMLRDVSAPKLQRLGEIVDEMM  290 (304)
T ss_dssp             CHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhhchHHHHHHHHHHhcCC
Confidence            999999        99999887654

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=99.20  E-value=2e-10  Score=92.82  Aligned_cols=120  Identities=20%  Similarity=0.217  Sum_probs=93.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC-CCcc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-GGQK   84 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~-~gq~   84 (157)
                      .+.++.+.++|+|.|.+|..   .+ .++++.+|+.|+.+++.+   ++.+.++.+.+  .++|+|.+.+..+|. .|+.
T Consensus        78 ~~~~~~a~~~g~d~V~~~~g---~p-~~~i~~l~~~g~~v~~~v---~~~~~a~~~~~--~GaD~i~v~g~~~GG~~g~~  148 (332)
T 2z6i_A           78 EDIVDLVIEEGVKVVTTGAG---NP-SKYMERFHEAGIIVIPVV---PSVALAKRMEK--IGADAVIAEGMEAGGHIGKL  148 (332)
T ss_dssp             HHHHHHHHHTTCSEEEECSS---CG-GGTHHHHHHTTCEEEEEE---SSHHHHHHHHH--TTCSCEEEECTTSSEECCSS
T ss_pred             HHHHHHHHHCCCCEEEECCC---Ch-HHHHHHHHHcCCeEEEEe---CCHHHHHHHHH--cCCCEEEEECCCCCCCCCCc
Confidence            57788999999999999986   34 577888888999888777   45555555554  579999997655432 2332


Q ss_pred             cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCC
Q 031554           85 FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPE  138 (157)
Q Consensus        85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d  138 (157)
                         ..++.++++++.. ++++.++|||+ .+++..+...|||++.+||+++..++
T Consensus       149 ---~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e  199 (332)
T 2z6i_A          149 ---TTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKE  199 (332)
T ss_dssp             ---CHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTT
T ss_pred             ---cHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCcc
Confidence               3456677777664 78999999998 99999999999999999999987653

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=99.20  E-value=3.8e-10  Score=87.26  Aligned_cols=126  Identities=17%  Similarity=0.106  Sum_probs=96.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      .+.++.+.++|||++..+..    . .+++++++++|+.+..-+  .||-|..+.+-   .++|+|-+   .|+.   ..
T Consensus        96 ~~~a~~Ai~AGA~fIvsP~~----~-~~vi~~~~~~gi~~ipGv--~TptEi~~A~~---~Gad~vK~---FPa~---~~  159 (232)
T 4e38_A           96 GEQALAAKEAGATFVVSPGF----N-PNTVRACQEIGIDIVPGV--NNPSTVEAALE---MGLTTLKF---FPAE---AS  159 (232)
T ss_dssp             HHHHHHHHHHTCSEEECSSC----C-HHHHHHHHHHTCEEECEE--CSHHHHHHHHH---TTCCEEEE---CSTT---TT
T ss_pred             HHHHHHHHHcCCCEEEeCCC----C-HHHHHHHHHcCCCEEcCC--CCHHHHHHHHH---cCCCEEEE---CcCc---cc
Confidence            35788999999999987652    3 688999999998865544  37777666666   79999966   4641   11


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHH
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKS  149 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~  149 (157)
                        ...+.++.++.-.+++++...|||+++|++++.++|+..+|+||.++..     .|+.+-.+..++.
T Consensus       160 --gG~~~lkal~~p~p~ip~~ptGGI~~~n~~~~l~aGa~~~vgGs~l~~~~~i~~~~~~~i~~~a~~~  226 (232)
T 4e38_A          160 --GGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVLACGGTWMVDKKLVTNGEWDEIARLTREI  226 (232)
T ss_dssp             --THHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGCHHHHHTTCHHHHHHHHHHH
T ss_pred             --cCHHHHHHHHHHhcCCCeeeEcCCCHHHHHHHHHCCCeEEEECchhcChHHhhcCCHHHHHHHHHHH
Confidence              2457889999888899999999999999999999999999999999853     4655444444433

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=99.19  E-value=1.6e-10  Score=88.81  Aligned_cols=130  Identities=21%  Similarity=0.301  Sum_probs=90.6

Q ss_pred             HHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEE--ecCCCCH----HhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554           10 EPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVA--LKPGTSV----EEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~--l~~~t~~----~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      +.+++.  |++|+|.-.. .+.+..+++..+++|..+-+.  ++.....    ..+.++.+- .++|.+..    ++   
T Consensus        74 ~~~~~~--d~vTVh~~~G~~~~~~~a~~~~~~~~~~v~vLts~s~~~~~~~~~~~~a~~a~~-~g~~GvV~----sa---  143 (222)
T 4dbe_A           74 ERLSFA--NSFIAHSFIGVKGSLDELKRYLDANSKNLYLVAVMSHEGWSTLFADYIKNVIRE-ISPKGIVV----GG---  143 (222)
T ss_dssp             TTCTTC--SEEEEESTTCTTTTHHHHHHHHHHTTCEEEEEEECSSTTCCCTTHHHHHHHHHH-HCCSEEEE----CT---
T ss_pred             HHHHhC--CEEEEEcCcCcHHHHHHHHHHHHhcCCcEEEEEeCCCcchHHHHHHHHHHHHHH-hCCCEEEE----CC---
Confidence            334444  9999998876 667688999988877644332  2221110    222222222 36776643    11   


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEcCCCHh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~--~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~  155 (157)
                        ..+   +.++++|+..++ .+.+.+||+++  +..+.+++|+|.+|+|+.|++++||.++++++++.+++.|.
T Consensus       144 --t~p---~e~~~ir~~~~~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~A~dP~~aa~~i~~~i~~~~~  212 (222)
T 4dbe_A          144 --TKL---DHITQYRRDFEK-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYNAGNPLTALRTINKIIEDKVM  212 (222)
T ss_dssp             --TCH---HHHHHHHHHCTT-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred             --CCH---HHHHHHHHhCCC-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence              112   245666776667 57799999987  78888999999999999999999999999999999988764

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=99.18  E-value=1.6e-11  Score=98.18  Aligned_cols=139  Identities=16%  Similarity=0.192  Sum_probs=93.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG-   82 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g-   82 (157)
                      ...++.+.++|||.|.. .+. ..+ .+++++++++  |..+.+.+  +|.-+..+...   .++|+|.+-+. .|++. 
T Consensus        90 ide~qil~aaGAD~Id~-s~~-~~~-~~li~~i~~~~~g~~vvv~v--~~~~Ea~~a~~---~Gad~I~v~g~-~gTG~~  160 (297)
T 4adt_A           90 FVEAQILEELKVDMLDE-SEV-LTM-ADEYNHINKHKFKTPFVCGC--TNLGEALRRIS---EGASMIRTKGE-AGTGNI  160 (297)
T ss_dssp             HHHHHHHHHTTCSEEEE-ETT-SCC-SCSSCCCCGGGCSSCEEEEE--SSHHHHHHHHH---HTCSEEEECCC-TTSCCC
T ss_pred             HHHHHHHHHcCCCEEEc-CCC-CCH-HHHHHHHHhcCCCCeEEEEe--CCHHHHHHHHh---CCCCEEEECCC-cCCCch
Confidence            45667778999999922 221 122 4667777774  55544433  55555444444   57898866432 33331 


Q ss_pred             -----------------------c--cc---chhHHHHHHHHHhhCCCCcE--EEEcCC-CHhhHHHHHHcCCCEEEEcc
Q 031554           83 -----------------------Q--KF---MPEMMDKVRSLRNRYPSLDI--EVDGGL-GPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        83 -----------------------q--~~---~~~~~~ki~~l~~~~~~~~I--~vdGGI-~~~~i~~~~~~Gad~vV~GS  131 (157)
                                             .  .|   ....++.++++++.. ++++  .++||| +++++..+.++|||++++||
T Consensus       161 ~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~-~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGs  239 (297)
T 4adt_A          161 IEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLK-RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGS  239 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHT-SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESH
T ss_pred             HHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhH
Confidence                                   0  01   122355677777664 3444  489999 89999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHh
Q 031554          132 SVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       132 ai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +||+++||.+++++|++.+....
T Consensus       240 ai~~a~dp~~~~~~l~~ai~~~~  262 (297)
T 4adt_A          240 GIFESENPQKMASSIVMAVSNFN  262 (297)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHTTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999887643

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}

Probab=99.16  E-value=1.8e-11  Score=96.14  Aligned_cols=133  Identities=18%  Similarity=0.172  Sum_probs=86.8

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CC-c---eEEEecCCCCHHhHH--------------hhHhc-
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---GM-R---PGVALKPGTSVEEVY--------------PLVEG-   64 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~-~---~gl~l~~~t~~~~~~--------------~~~~~-   64 (157)
                      .+++.+++.|+|++|+|.-.....+...++.+++.   |. +   ++|..-++..-+.++              .+.++ 
T Consensus        74 ~a~~~~~~~gad~vTVh~~~G~~~~~aa~~~~~~~~~~g~~~~~li~Vt~lTS~~~~~l~~~~g~~~~~~e~v~~~A~~a  153 (259)
T 3tfx_A           74 NGAKALAKLGITFTTVHALGGSQMIKSAKDGLIAGTPAGHSVPKLLAVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMA  153 (259)
T ss_dssp             HHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCCHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            45678899999999999877666667777777653   32 2   344332233322331              11110 


Q ss_pred             -CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEccc
Q 031554           65 -ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSS  132 (157)
Q Consensus        65 -~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSa  132 (157)
                       ..++|.|..            .+.-+   +.+|+..++-.+.|..||++.           |+.+++++|||.+|+||+
T Consensus       154 ~~~G~dGvV~------------s~~e~---~~ir~~~~~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iVvGr~  218 (259)
T 3tfx_A          154 KHSGADGVIC------------SPLEV---KKLHENIGDDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIVVGRP  218 (259)
T ss_dssp             HHTTCCEEEC------------CGGGH---HHHHHHHCSSSEEEECCCCCC-----------CHHHHHHTTCSEEEECHH
T ss_pred             HHhCCCEEEE------------CHHHH---HHHHhhcCCccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChH
Confidence             024454432            12223   444444333335689999975           588999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHh
Q 031554          133 VFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       133 i~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      ||+++||.++++.+++.++.++
T Consensus       219 I~~a~dp~~a~~~i~~~~~~~~  240 (259)
T 3tfx_A          219 ITLASDPKAAYEAIKKEFNAEN  240 (259)
T ss_dssp             HHTSSSHHHHHHHHHHHHTCTT
T ss_pred             HhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998876543

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*

Probab=99.15  E-value=2.8e-11  Score=94.82  Aligned_cols=139  Identities=17%  Similarity=0.234  Sum_probs=88.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC----CceEEEecCCCCHHhHHhhHhcCCC--CCeEEEEe---e
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG----MRPGVALKPGTSVEEVYPLVEGANP--VEMVLVMT---V   76 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g----~~~gl~l~~~t~~~~~~~~~~~~~~--~d~vl~m~---v   76 (157)
                      ..+++.+++.|+|++|+|.-...+.+..+++.++++|    ...|+.+-.+++-+.+++.- . ..  .+.|+-+.   .
T Consensus        95 ~~a~~~~~~~gaD~vTVh~~~G~~~~~~a~~~~~~~g~~~~~li~VtvLTS~s~~~l~~~g-~-~~~~~~~V~~~A~~a~  172 (255)
T 3ldv_A           95 SKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESADLQGIG-I-LSAPQDHVLRLATLTK  172 (255)
T ss_dssp             HHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHGGGGGGSCEEEEECSCTTCCHHHHHHTT-C-CSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHhhcCCCCceEEEEEEEecCCHHHHHhcC-C-CCCHHHHHHHHHHHHH
Confidence            4567889999999999998776666677777776654    23455554555544443210 0 00  00111110   1


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~d~~~~~~  144 (157)
                      ..|..|--..+.   .++.+|+.. +++ +.|..||+++           |..+++++|||.+|+||+||+++||.++++
T Consensus       173 ~aG~~GvV~sa~---e~~~iR~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~  248 (255)
T 3ldv_A          173 NAGLDGVVCSAQ---EASLLKQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLE  248 (255)
T ss_dssp             HTTCSEEECCHH---HHHHHHHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEECHHHHTCSCHHHHHH
T ss_pred             HcCCCEEEECHH---HHHHHHHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEEEECHHHhCCCCHHHHHH
Confidence            223333222222   345555543 345 5588999864           477899999999999999999999999999


Q ss_pred             HHHHHH
Q 031554          145 LMRKSV  150 (157)
Q Consensus       145 ~l~~~~  150 (157)
                      .+++.+
T Consensus       249 ~i~~ei  254 (255)
T 3ldv_A          249 EINSSL  254 (255)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998754

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}

Probab=99.14  E-value=5.6e-11  Score=92.36  Aligned_cols=142  Identities=16%  Similarity=0.252  Sum_probs=86.9

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC--C---ceEEEecCCCCHHhHHhhHhc-CCCCCeEEEEe---
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG--M---RPGVALKPGTSVEEVYPLVEG-ANPVEMVLVMT---   75 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g--~---~~gl~l~~~t~~~~~~~~~~~-~~~~d~vl~m~---   75 (157)
                      +..+++.+.+.|+|++|+|.....+.+..+.+.+++++  .   -.++.+-.+++-+.++++- . .+..+.|+-+.   
T Consensus        75 v~~~~~~~~~~gad~vTvh~~~G~~~~~~a~~~~~~~~~~~~~~l~~Vt~LTS~~~~~l~~~g-~~~~~~~~v~~~A~~a  153 (239)
T 3tr2_A           75 VAGACRAVAELGVWMMNIHISGGRTMMETVVNALQSITLKEKPLLIGVTILTSLDGSDLKTLG-IQEKVPDIVCRMATLA  153 (239)
T ss_dssp             HHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHHTCCCSSCCEEEEECSCTTCCHHHHHHTT-CCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCcCCCceEEEEEEEeeCCHHHHHhcC-CCCCHHHHHHHHHHHH
Confidence            34577889999999999998876666677777777653  1   2455444455544443210 0 00001111110   


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      ...|..|--..+.   .+..+|+..+ ++ +.|..||+++           |..+++++|||.+|+||+||+++||.+++
T Consensus       154 ~~~g~~GvV~s~~---e~~~ir~~~~~~f-l~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~lVvGr~I~~a~dp~~a~  229 (239)
T 3tr2_A          154 KSAGLDGVVCSAQ---EAALLRKQFDRNF-LLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYLVIGRPITQSTDPLKAL  229 (239)
T ss_dssp             HHHTCCEEECCHH---HHHHHHTTCCTTS-EEEECCBC----------CCBCHHHHHHHTCSEEEECHHHHTSSSHHHHH
T ss_pred             HHcCCCEEEECch---hHHHHHHhcCCCc-EEECCCcCCCCCCcCcccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHH
Confidence            0112222111111   2345566553 45 5588999874           47788999999999999999999999999


Q ss_pred             HHHHHHHH
Q 031554          144 SLMRKSVE  151 (157)
Q Consensus       144 ~~l~~~~~  151 (157)
                      +.+++.+.
T Consensus       230 ~~i~~~i~  237 (239)
T 3tr2_A          230 EAIDKDIK  237 (239)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHh
Confidence            99988764

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=99.06  E-value=1.4e-08  Score=79.36  Aligned_cols=137  Identities=16%  Similarity=0.170  Sum_probs=96.3

Q ss_pred             HHHHHh--CCCCEEEEcccCC-----cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            9 VEPLGK--AGASGFTFHVEIS-----KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         9 i~~~~~--~gad~v~vh~e~~-----~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      .+++.|  .|-+||-+-.-..     +++ .++++.++..   |+++-..++ + ++...+.+.+  -+++.|+-++..-
T Consensus        93 a~lare~~~~~~~iKlEv~~d~~~llpD~-~~tv~aa~~L~~~Gf~Vlpy~~-d-d~~~akrl~~--~G~~aVmPlg~pI  167 (265)
T 1wv2_A           93 CRLARELLDGHNLVKLEVLADQKTLFPNV-VETLKAAEQLVKDGFDVMVYTS-D-DPIIARQLAE--IGCIAVMPLAGLI  167 (265)
T ss_dssp             HHHHHTTTTSCCEEEECCBSCTTTCCBCH-HHHHHHHHHHHTTTCEEEEEEC-S-CHHHHHHHHH--SCCSEEEECSSST
T ss_pred             HHHHHHHcCCCCeEEEEeecCccccCcCH-HHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHH--hCCCEEEeCCccC
Confidence            344444  4788887764322     345 7777777776   887665553 3 3444455544  4788885544433


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      |. |+...  ..+.|+++++. ++++|.+||||. ++.+....+.|||++++||+|++++||....+++.+.++-.|
T Consensus       168 Gs-G~Gi~--~~~lI~~I~e~-~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~aGr  240 (265)
T 1wv2_A          168 GS-GLGIC--NPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGR  240 (265)
T ss_dssp             TC-CCCCS--CHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             CC-CCCcC--CHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHH
Confidence            44 43321  24456666664 578999999999 799999999999999999999999999999999999876443

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=99.05  E-value=3.1e-10  Score=90.73  Aligned_cols=138  Identities=14%  Similarity=0.182  Sum_probs=93.2

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC----
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF----   80 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~----   80 (157)
                      ...++.+.++|||.|.. .+... ..+.+.++ .++.|..+++.+  .++.+..+.+-   .++|+|.+-+ +.|.    
T Consensus        90 ~~~~~~~~a~GAd~V~~-~~~l~~~~~~~~i~-~~~~g~~v~~~~--~~~~e~~~a~~---~Gad~V~~~G-~~g~g~~~  161 (305)
T 2nv1_A           90 IVEARVLEAMGVDYIDE-SEVLTPADEEFHLN-KNEYTVPFVCGC--RDLGEATRRIA---EGASMLRTKG-EPGTGNIV  161 (305)
T ss_dssp             HHHHHHHHHHTCSEEEE-CTTSCCSCSSCCCC-GGGCSSCEEEEE--SSHHHHHHHHH---TTCSEEEECC-CTTSCCTH
T ss_pred             hHHHHHHHHCCCCEEEE-eccCCHHHHHHHHH-HhccCCcEEEEe--CCHHHHHHHHH---CCCCEEEecc-ccCccchH
Confidence            45677888899999973 22211 11023333 446788887766  34445455444   6899987732 2221    


Q ss_pred             -------------------CCccc------chhHHHHHHHHHhhCCCCcEE--EEcCC-CHhhHHHHHHcCCCEEEEccc
Q 031554           81 -------------------GGQKF------MPEMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        81 -------------------~gq~~------~~~~~~ki~~l~~~~~~~~I~--vdGGI-~~~~i~~~~~~Gad~vV~GSa  132 (157)
                                         .+...      .+..++.++++++. .++++.  +.||| +.+++.++.++|||++++||+
T Consensus       162 ~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~-~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsa  240 (305)
T 2nv1_A          162 EAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKD-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSG  240 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHH-TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGG
T ss_pred             HHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHHHh-cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHH
Confidence                               11110      12245667777765 356666  99999 899999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHH
Q 031554          133 VFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       133 i~~~~d~~~~~~~l~~~~~~  152 (157)
                      +++++||...++.+++.+..
T Consensus       241 i~~~~~p~~~~~~l~~~~~~  260 (305)
T 2nv1_A          241 IFKSDNPAKFAKAIVEATTH  260 (305)
T ss_dssp             GGGSSCHHHHHHHHHHHHHT
T ss_pred             HHcCCCHHHHHHHHHHHHHH
Confidence            99999999999999887764

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=99.02  E-value=3.5e-09  Score=82.73  Aligned_cols=132  Identities=16%  Similarity=0.289  Sum_probs=98.6

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCC-CCCeEEEEeeeC-CC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGAN-PVEMVLVMTVEP-GF   80 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~-~~d~vl~m~v~p-G~   80 (157)
                      +|. .+.++..+|||.|.+-....+ ..+.++++.+++.|+.+-+.++  | .+.++..++  - ++|+|.+   ++ +.
T Consensus       112 ~~~-qi~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~--~-~eE~~~A~~--l~g~~iIGi---nnr~l  182 (251)
T 1i4n_A          112 DTV-QVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVH--S-REDLEKVFS--VIRPKIIGI---NTRDL  182 (251)
T ss_dssp             STH-HHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEEC--S-HHHHHHHHT--TCCCSEEEE---ECBCT
T ss_pred             CHH-HHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeC--C-HHHHHHHHh--cCCCCEEEE---eCccc
Confidence            455 466699999999999877644 3558899999999999998885  3 333444442  4 6887744   43 32


Q ss_pred             CCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      .  .|.. .++...++.+..| +..+...|||+ ++++..+.++ +|+|++||+|.+++||.+++++|..
T Consensus       183 ~--t~~~-d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~~d~~~~~~~l~~  248 (251)
T 1i4n_A          183 D--TFEI-KKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKAENPRRFLEEMRA  248 (251)
T ss_dssp             T--TCCB-CTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHCSSHHHHHHHHHH
T ss_pred             c--cCCC-CHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHHh
Confidence            2  2322 2455566666554 47788899997 9999999999 9999999999999999999988865

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=99.02  E-value=2.3e-09  Score=83.45  Aligned_cols=132  Identities=21%  Similarity=0.150  Sum_probs=80.0

Q ss_pred             HHHHHHhCCCCEEEEcccCCc---chHHHHHHHHHHcC--C-ceEEEecCC-------------------CCHHhHHhhH
Q 031554            8 YVEPLGKAGASGFTFHVEISK---DNWQELVQRIKSKG--M-RPGVALKPG-------------------TSVEEVYPLV   62 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~---~~~~~~i~~ir~~g--~-~~gl~l~~~-------------------t~~~~~~~~~   62 (157)
                      .++.+.++|||.|.+.....+   ++ ..+.+.++..|  . ++.+.+.+.                   ++.+.++.+.
T Consensus        88 ~i~~~~~~Gad~v~lg~~~~~~~~~~-~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~  166 (266)
T 2w6r_A           88 HFLEAFLAGADKALAASVFHFREIDM-RELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVE  166 (266)
T ss_dssp             HHHHHHHHTCSEEECCCCC------C-HHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHcCCcHhhhhHHHHhCCCCH-HHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHH
Confidence            466777899999999987762   45 45555555555  2 333333321                   3455555554


Q ss_pred             hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-CHH
Q 031554           63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-EPA  140 (157)
Q Consensus        63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d~~  140 (157)
                      +  .+++.|.+.++...  |.... ..++.++++++.. ++++.+.|||+ ++++.++.++|||++++||++++.+ ++.
T Consensus       167 ~--~G~~~i~~t~~~~~--g~~~g-~~~~~i~~l~~~~-~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~  240 (266)
T 2w6r_A          167 K--RGAGEILLTSIDRD--GTKSG-YDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMR  240 (266)
T ss_dssp             H--TTCSEEEEEETTTT--TTCSC-CCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-------
T ss_pred             H--cCCCEEEEEeecCC--CCcCC-CCHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHH
Confidence            4  47899988655432  22221 2367778888764 78999999999 6999999999999999999999876 444


Q ss_pred             HHHHHH
Q 031554          141 HVISLM  146 (157)
Q Consensus       141 ~~~~~l  146 (157)
                      +..+.+
T Consensus       241 ~~~~~l  246 (266)
T 2w6r_A          241 ELKEYL  246 (266)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            444444

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=98.99  E-value=9.8e-09  Score=80.62  Aligned_cols=135  Identities=14%  Similarity=0.080  Sum_probs=91.5

Q ss_pred             HHHHHHhCCCCEEEEcccCCcch-------HHHHHHHHHHcCCceEEEecCCC-------CHHhHHh---hHhcCCCCCe
Q 031554            8 YVEPLGKAGASGFTFHVEISKDN-------WQELVQRIKSKGMRPGVALKPGT-------SVEEVYP---LVEGANPVEM   70 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~-------~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~---~~~~~~~~d~   70 (157)
                      -++.+.+.|||.|-++....+..       +.++.+.++++|+.+.+...+.-       +.+.+..   ...- .++||
T Consensus        97 ~ve~Ai~~Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~-~GAD~  175 (263)
T 1w8s_A           97 SVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALE-LGADA  175 (263)
T ss_dssp             CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHH-HTCSE
T ss_pred             HHHHHHHCCCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHH-cCCCE
Confidence            46788999999999986222211       13444455677888766554410       2222222   1111 47999


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-------hHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-------TIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-------~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      |-+-  .|+         ..+.++++++..+.++|.+-|||+.+       ++..+.++||+++.+||+||+++||.+++
T Consensus       176 vkt~--~~~---------~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~dp~~~~  244 (263)
T 1w8s_A          176 MKIK--YTG---------DPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFA  244 (263)
T ss_dssp             EEEE--CCS---------SHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHH
T ss_pred             EEEc--CCC---------CHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcCHHHHH
Confidence            8653  221         34566777766544589999999865       77777799999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 031554          144 SLMRKSVEDAQ  154 (157)
Q Consensus       144 ~~l~~~~~~~~  154 (157)
                      +.|++++.+.+
T Consensus       245 ~~l~~~v~~~~  255 (263)
T 1w8s_A          245 RALAELVYGGK  255 (263)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHHhcCC
Confidence            99999887544

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=98.99  E-value=4.8e-09  Score=82.11  Aligned_cols=134  Identities=21%  Similarity=0.242  Sum_probs=93.5

Q ss_pred             HHHHHHHHhCCCCEEEEc--ccCCcc-----hHHHHHHHHHHcCCceEEEecC--------CC--CHHhH-HhhHhcCCC
Q 031554            6 LDYVEPLGKAGASGFTFH--VEISKD-----NWQELVQRIKSKGMRPGVALKP--------GT--SVEEV-YPLVEGANP   67 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh--~e~~~~-----~~~~~i~~ir~~g~~~gl~l~~--------~t--~~~~~-~~~~~~~~~   67 (157)
                      ...++.+.+.|+|.|.++  .-..+.     .+.++.+.++++|+.+-+.+.+        .+  .++.+ +...+  .+
T Consensus       102 ~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~--~G  179 (273)
T 2qjg_A          102 VTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAE--LG  179 (273)
T ss_dssp             CSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHH--cC
Confidence            345788899999999443  222211     1255677788889887665421        11  12222 32222  57


Q ss_pred             CCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhh-------HHHHHHcCCCEEEEcccccCCCCHH
Q 031554           68 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST-------IAEAASAGANCIVAGSSVFGAPEPA  140 (157)
Q Consensus        68 ~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~-------i~~~~~~Gad~vV~GSai~~~~d~~  140 (157)
                      +|+|.+-   |+        ..++.++++++.. ++++.+-|||+.++       +.++.++||+++.+||+|++++||.
T Consensus       180 ad~i~~~---~~--------~~~~~l~~i~~~~-~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~  247 (273)
T 2qjg_A          180 ADIVKTS---YT--------GDIDSFRDVVKGC-PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVV  247 (273)
T ss_dssp             CSEEEEC---CC--------SSHHHHHHHHHHC-SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHH
T ss_pred             CCEEEEC---CC--------CCHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHH
Confidence            9988652   31        2356677777664 68999999999655       8888899999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 031554          141 HVISLMRKSVEDA  153 (157)
Q Consensus       141 ~~~~~l~~~~~~~  153 (157)
                      +.++.+++.++..
T Consensus       248 ~~~~~l~~~~~~~  260 (273)
T 2qjg_A          248 GITRAVCKIVHEN  260 (273)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999888753

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=98.98  E-value=3.2e-10  Score=91.31  Aligned_cols=144  Identities=16%  Similarity=0.146  Sum_probs=92.0

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE------------
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV------------   71 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v------------   71 (157)
                      +-.+.++.. .+||++|..|.|+.-..+.+.++++|.-...+- .++..+..+....-.+  ...|||            
T Consensus       130 ~lgea~r~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~-~~s~~~~~El~~~A~~--~gadyv~~~~~vt~~~G~  205 (330)
T 2yzr_A          130 NLGEAVRRI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIA-QLQRMTDEEVYGVAKF--YANRYAELAKTVREGMGL  205 (330)
T ss_dssp             SHHHHHHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHH--HHGGGGHHHHHHHHHTTS
T ss_pred             cHHHHHHHH-hcCcceeeccCCCCcccchhHHHHHHHHHHHHH-HhccCCHHHHHHHHHH--cCCCEeecccchhhhccc
Confidence            344455555 889999999999877665777666555221110 1333444443221111  245661            


Q ss_pred             -----EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE--EEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           72 -----LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI--EVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        72 -----l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I--~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                           -+..+.|.++-....+..++.++++++.. .+++  .+.||| |++++.++.++|||++.+||+||+++||.+++
T Consensus       206 ~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~-~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aa  284 (330)
T 2yzr_A          206 PATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLG-RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERA  284 (330)
T ss_dssp             CSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHT-SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHH
T ss_pred             cccccccccccCCCcccCCCcchHHHHHHHHHhC-CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHH
Confidence                 11111221111000123456777777753 4555  689999 59999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 031554          144 SLMRKSVED  152 (157)
Q Consensus       144 ~~l~~~~~~  152 (157)
                      ++|.+.++.
T Consensus       285 r~l~~ai~~  293 (330)
T 2yzr_A          285 RAIVEATYN  293 (330)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988764

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=98.96  E-value=1.2e-08  Score=81.03  Aligned_cols=143  Identities=18%  Similarity=0.291  Sum_probs=95.8

Q ss_pred             ChHHHHH---HHHh-CCCCEEEEcccCCc------------chHHHHHHHHHHc-CCceEEEecCC--CCHHhHHhhHhc
Q 031554            4 NPLDYVE---PLGK-AGASGFTFHVEISK------------DNWQELVQRIKSK-GMRPGVALKPG--TSVEEVYPLVEG   64 (157)
Q Consensus         4 ~p~~~i~---~~~~-~gad~v~vh~e~~~------------~~~~~~i~~ir~~-g~~~gl~l~~~--t~~~~~~~~~~~   64 (157)
                      +|..|.+   .+.+ +|+|+|.+|.-.+.            +.+.++++++|+. +..+.+-+.|+  +..+.++.+.+ 
T Consensus       109 ~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~-  187 (311)
T 1ep3_A          109 EEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEA-  187 (311)
T ss_dssp             SHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHH-
Confidence            3555544   3345 89999999864221            1226788889887 87777777654  33554555554 


Q ss_pred             CCCCCeEEEEeee------C------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCC
Q 031554           65 ANPVEMVLVMTVE------P------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGAN  125 (157)
Q Consensus        65 ~~~~d~vl~m~v~------p------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad  125 (157)
                       .++|+|.+-...      +            |+.|....+..++.++++++.. +++|.+.||| +.+++.++.++|||
T Consensus       188 -~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~-~ipvia~GGI~~~~d~~~~l~~GAd  265 (311)
T 1ep3_A          188 -AGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGAS  265 (311)
T ss_dssp             -TTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCS
T ss_pred             -cCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCC
Confidence             579999884321      1            1223332233467788888764 8999999999 58999999999999


Q ss_pred             EEEEcccccCCCCHH-HHHHHHHHH
Q 031554          126 CIVAGSSVFGAPEPA-HVISLMRKS  149 (157)
Q Consensus       126 ~vV~GSai~~~~d~~-~~~~~l~~~  149 (157)
                      .+.+||+++..++.- +..+.++..
T Consensus       266 ~V~vg~~~l~~p~~~~~i~~~l~~~  290 (311)
T 1ep3_A          266 AVAVGTANFADPFVCPKIIDKLPEL  290 (311)
T ss_dssp             EEEECTHHHHCTTHHHHHHHHHHHH
T ss_pred             EEEECHHHHcCcHHHHHHHHHHHHH
Confidence            999999988766543 333444443

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=98.96  E-value=1.9e-08  Score=82.32  Aligned_cols=125  Identities=23%  Similarity=0.297  Sum_probs=85.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG-   82 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g-   82 (157)
                      .++++.+.++|+|.|+++....+ ..+.+.++++|+. +..+.+. +. +..+.++.+.+  .++|+|.+ +..||.-. 
T Consensus       107 ~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg-~v-~t~e~A~~l~~--aGaD~I~V-G~~~Gs~~~  181 (361)
T 3khj_A          107 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NV-VTEEATKELIE--NGADGIKV-GIGPGSICT  181 (361)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEE-EE-CSHHHHHHHHH--TTCSEEEE-CSSCCTTCC
T ss_pred             HHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEc-cC-CCHHHHHHHHH--cCcCEEEE-ecCCCcCCC
Confidence            67899999999999998754422 1225677887776 6655441 22 34555666655  58999988 66676310 


Q ss_pred             -c---cc---chhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCC
Q 031554           83 -Q---KF---MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        83 -q---~~---~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                       +   .+   ....+..+.++++. .+++|.++||| +.+++..+.++|||.+.+||+++..
T Consensus       182 tr~~~g~g~p~~~~i~~v~~~~~~-~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t  242 (361)
T 3khj_A          182 TRIVAGVGVPQITAIEKCSSVASK-FGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGT  242 (361)
T ss_dssp             HHHHTCBCCCHHHHHHHHHHHHHH-HTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTB
T ss_pred             cccccCCCCCcHHHHHHHHHHHhh-cCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcC
Confidence             0   01   11233334333332 36899999999 5899999999999999999999875

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=98.92  E-value=1.5e-08  Score=82.91  Aligned_cols=124  Identities=19%  Similarity=0.217  Sum_probs=85.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      .+.++.+.++|+|.|+++..... ..+.+.++++|+.  +..+..- +..|+ +.++.+.+  .++|+|.+ +..||...
T Consensus       102 ~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G-~V~T~-e~A~~a~~--aGaD~I~V-g~g~G~~~  176 (361)
T 3r2g_A          102 LQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAG-NVATY-AGADYLAS--CGADIIKA-GIGGGSVC  176 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEE-EECSH-HHHHHHHH--TTCSEEEE-CCSSSSCH
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEc-CcCCH-HHHHHHHH--cCCCEEEE-cCCCCcCc
Confidence            45788899999999999643211 1225789999987  5444431 23444 44444444  68999998 77776431


Q ss_pred             cc-----cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           83 QK-----FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        83 q~-----~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ..     +....+..|.++++...  +|.+||||+ ..++...+++|||.+.+||+++..
T Consensus       177 ~tr~~~g~g~p~l~aI~~~~~~~~--PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t  234 (361)
T 3r2g_A          177 STRIKTGFGVPMLTCIQDCSRADR--SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGS  234 (361)
T ss_dssp             HHHHHHCCCCCHHHHHHHHTTSSS--EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTB
T ss_pred             cccccCCccHHHHHHHHHHHHhCC--CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence            10     11125666676665432  899999996 899999999999999999999865

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=98.92  E-value=5.4e-09  Score=80.80  Aligned_cols=113  Identities=15%  Similarity=0.221  Sum_probs=77.2

Q ss_pred             hCCCCEEEEcccCCcch----HHHHHHHHHHcCC-----ceEE----EecCCCCHHh---------HHhhHhc------C
Q 031554           14 KAGASGFTFHVEISKDN----WQELVQRIKSKGM-----RPGV----ALKPGTSVEE---------VYPLVEG------A   65 (157)
Q Consensus        14 ~~gad~v~vh~e~~~~~----~~~~i~~ir~~g~-----~~gl----~l~~~t~~~~---------~~~~~~~------~   65 (157)
                      ..|+|.+.|+.-...+.    +..-.+.++++|.     ++-.    .++|+++...         .+.....      .
T Consensus        78 ~~gaD~il~pslln~~~~~~i~g~~~~a~~~~gl~~~~~e~i~~gYivv~p~s~v~~v~~a~~~~~~e~iaa~A~~a~~~  157 (235)
T 3w01_A           78 MPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHM  157 (235)
T ss_dssp             CTTCSEEEEEEETTBSSGGGTTHHHHHHHHHHGGGCCGGGEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHT
T ss_pred             hcCCCEEEEccccCCCCcchhhhHHHHHHHHcCCCCcccceeeeeEEEECCCCChhhcccCCcCCCHHHHHHHHHHHHHH
Confidence            45999999994333322    1223567999998     7766    6899988763         2211100      0


Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      -...+|.+-+  .|..|      ..+.++++|+..++.++.+.|||+ +++++++.+ |||++|+||++++
T Consensus       158 ~g~~~vY~e~--sG~~g------~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~  219 (235)
T 3w01_A          158 YRLPVMYIEY--SGIYG------DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYK  219 (235)
T ss_dssp             TCCSEEEEEC--TTSCC------CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHH
T ss_pred             cCCCEEEEec--CCCcC------CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceec
Confidence            1345665533  45444      245667777765578999999998 799999887 9999999999997

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=98.90  E-value=8.4e-09  Score=79.37  Aligned_cols=131  Identities=16%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC---------------CCCHHhHHhhHhcCCCCCe
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP---------------GTSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~---------------~t~~~~~~~~~~~~~~~d~   70 (157)
                      ...++.+.++|||.|++......++  +.++.++++|-.+-+.+.+               .++.+.++.+.+  ..++.
T Consensus        85 ~~~~~~~~~~Gad~V~lg~~~l~~p--~~~~~~~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~--~G~~~  160 (241)
T 1qo2_A           85 LDYAEKLRKLGYRRQIVSSKVLEDP--SFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKE--YGLEE  160 (241)
T ss_dssp             HHHHHHHHHTTCCEEEECHHHHHCT--THHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHT--TTCCE
T ss_pred             HHHHHHHHHCCCCEEEECchHhhCh--HHHHHHHHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHh--CCCCE
Confidence            3467778889999999997766666  3344446666443333433               144555555543  47899


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-----C-CCEEEEcccccCCC-CHHHH
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-----G-ANCIVAGSSVFGAP-EPAHV  142 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-----G-ad~vV~GSai~~~~-d~~~~  142 (157)
                      |.+.++..  +|....+ .++.++++++.. ++++.+-|||+ ++++.++.+.     | ||++++||++++.+ ++.+.
T Consensus       161 i~~t~~~~--~g~~~g~-~~~~i~~l~~~~-~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~  236 (241)
T 1qo2_A          161 IVHTEIEK--DGTLQEH-DFSLTKKIAIEA-EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVM  236 (241)
T ss_dssp             EEEEETTH--HHHTCCC-CHHHHHHHHHHH-TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHH
T ss_pred             EEEEeecc--cccCCcC-CHHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHH
Confidence            98865432  1211111 366667777653 78999999999 6999999998     9 99999999999765 44544


Q ss_pred             HH
Q 031554          143 IS  144 (157)
Q Consensus       143 ~~  144 (157)
                      .+
T Consensus       237 ~~  238 (241)
T 1qo2_A          237 KR  238 (241)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=98.87  E-value=6.2e-08  Score=79.45  Aligned_cols=125  Identities=20%  Similarity=0.249  Sum_probs=83.9

Q ss_pred             HHHHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      .+.++.+.++|+|.|+++..  ..+.. .+.++++|+.  +..+... +. +..+.++.+.+  .++|+|.+ +..||.-
T Consensus       110 ~~~~~~lieaGvd~I~idta~G~~~~~-~~~I~~ik~~~p~v~Vi~G-~v-~t~e~A~~a~~--aGAD~I~v-G~gpGs~  183 (366)
T 4fo4_A          110 EERVKALVEAGVDVLLIDSSHGHSEGV-LQRIRETRAAYPHLEIIGG-NV-ATAEGARALIE--AGVSAVKV-GIGPGSI  183 (366)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCTTSHHH-HHHHHHHHHHCTTCEEEEE-EE-CSHHHHHHHHH--HTCSEEEE-CSSCSTT
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCCHHH-HHHHHHHHHhcCCCceEee-ee-CCHHHHHHHHH--cCCCEEEE-ecCCCCC
Confidence            57889999999999998532  22233 5678888887  5544331 22 34455555554  58999998 6667642


Q ss_pred             Ccc-----cchhHHHHHHHHHhh--CCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCC
Q 031554           82 GQK-----FMPEMMDKVRSLRNR--YPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        82 gq~-----~~~~~~~ki~~l~~~--~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      -..     +....+.-+.++++.  ..+++|.+|||| +..++..+..+|||.+.+||++...
T Consensus       184 ~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t  246 (366)
T 4fo4_A          184 CTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGT  246 (366)
T ss_dssp             BCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             CCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcC
Confidence            100     111123344444432  147999999999 5899999999999999999998864

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=98.86  E-value=3.8e-09  Score=82.00  Aligned_cols=122  Identities=13%  Similarity=0.218  Sum_probs=82.7

Q ss_pred             hCCCCEEEEcccCCcchHHHH-----HHHHHHcC-----CceEE----EecCCCC------------HHhHHhhHhcC--
Q 031554           14 KAGASGFTFHVEISKDNWQEL-----VQRIKSKG-----MRPGV----ALKPGTS------------VEEVYPLVEGA--   65 (157)
Q Consensus        14 ~~gad~v~vh~e~~~~~~~~~-----i~~ir~~g-----~~~gl----~l~~~t~------------~~~~~~~~~~~--   65 (157)
                      ++|+|.+.++--...+. ..+     ...++++|     .++-.    .++|++.            .+.+..+.+..  
T Consensus        75 ~~G~dg~iiPdLp~ee~-~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~  153 (240)
T 1viz_A           75 VPGFDLYFIPSVLNSKN-ADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSEL  153 (240)
T ss_dssp             CSCCSEEEEEEETTBSS-GGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEcccCcccC-hhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcc
Confidence            67999999995544433 344     68899999     77765    6677755            34555554210  


Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~  144 (157)
                      ....+|.+-+  -|.      +...+.++++++...+.++.+.|||+ +++++++.+ |||.+|+||++.+  +|.+.++
T Consensus       154 ~~~~~VYl~s--~G~------~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~--~~~~~~~  222 (240)
T 1viz_A          154 LQLPIFYLEY--SGV------LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYE--DFDRALK  222 (240)
T ss_dssp             TTCSEEEEEC--TTS------CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHH--CHHHHHT
T ss_pred             cCCCEEEEeC--CCc------cChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHh--CHHHHHH
Confidence            1234554333  232      22455677777775578999999999 799999988 9999999999996  4554444


Q ss_pred             HHH
Q 031554          145 LMR  147 (157)
Q Consensus       145 ~l~  147 (157)
                      +++
T Consensus       223 ~v~  225 (240)
T 1viz_A          223 TVA  225 (240)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=98.85  E-value=2.6e-09  Score=82.66  Aligned_cols=118  Identities=10%  Similarity=0.117  Sum_probs=80.6

Q ss_pred             hCCCCEEEEcccCCcchHHHHH-----HHH-------HHcC-----CceEE----EecCCC------------CHHhHHh
Q 031554           14 KAGASGFTFHVEISKDNWQELV-----QRI-------KSKG-----MRPGV----ALKPGT------------SVEEVYP   60 (157)
Q Consensus        14 ~~gad~v~vh~e~~~~~~~~~i-----~~i-------r~~g-----~~~gl----~l~~~t------------~~~~~~~   60 (157)
                      ++|+|.+.++--...+. .+++     +.+       +++|     ..+..    .++|++            +.+.++.
T Consensus        75 ~~gvDg~iipdLp~ee~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~~g~~~~~~e~~~~  153 (234)
T 2f6u_A           75 VYDVDYLFVPTVLNSAD-GDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAAS  153 (234)
T ss_dssp             CCCSSEEEEEEETTBSB-GGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHH
T ss_pred             hcCCCEEEEcccCCCCC-HHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEeecCCCCCCHHHHHH
Confidence            67999999995444443 4444     455       7788     76655    677776            5566777


Q ss_pred             hHhcCC-CC--CeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           61 LVEGAN-PV--EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        61 ~~~~~~-~~--d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      +.+... ..  .+|.+-+  -|.      +...+.++++++...+.++.+.|||+ +++++++.+ |||.+|+||++.+ 
T Consensus       154 ~a~~g~~~l~~~~Vyl~~--~G~------~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~-  223 (234)
T 2f6u_A          154 YALVGEKLFNLPIIYIEY--SGT------YGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYE-  223 (234)
T ss_dssp             HHHHHHHTTCCSEEEEEC--TTS------CCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHH-
T ss_pred             HHHhhhhhcCCCEEEEeC--CCC------cchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHh-
Confidence            764300 11  4555433  232      22455677777775578999999999 799999999 9999999999986 


Q ss_pred             CCHHHHH
Q 031554          137 PEPAHVI  143 (157)
Q Consensus       137 ~d~~~~~  143 (157)
                       +|.+++
T Consensus       224 -~~~~~~  229 (234)
T 2f6u_A          224 -KGIDAF  229 (234)
T ss_dssp             -HCHHHH
T ss_pred             -CHHHHH
Confidence             344443

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=98.85  E-value=3.8e-08  Score=77.96  Aligned_cols=114  Identities=15%  Similarity=0.140  Sum_probs=84.2

Q ss_pred             HHHHHHHhCCCCEEEEcc---cCCcchHHHHHHHHHHcCCceEEEecCC-----CCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            7 DYVEPLGKAGASGFTFHV---EISKDNWQELVQRIKSKGMRPGVALKPG-----TSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~---e~~~~~~~~~i~~ir~~g~~~gl~l~~~-----t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      +.++.+.++|||.|.|+.   +..-+. ....+.++..+. .+++++..     +|.+.++.++++  ++|.||.-    
T Consensus       115 ~dI~~~~~~GAdGvVfG~L~~dg~iD~-~~~~~Li~~a~~-l~vTFHRAFD~~~d~~~Ale~Li~l--GvdrILTS----  186 (287)
T 3iwp_A          115 ADIRLAKLYGADGLVFGALTEDGHIDK-ELCMSLMAICRP-LPVTFHRAFDMVHDPMAALETLLTL--GFERVLTS----  186 (287)
T ss_dssp             HHHHHHHHTTCSEEEECCBCTTSCBCH-HHHHHHHHHHTT-SCEEECGGGGGCSCHHHHHHHHHHH--TCSEEEEC----
T ss_pred             HHHHHHHHcCCCEEEEeeeCCCCCcCH-HHHHHHHHHcCC-CcEEEECchhccCCHHHHHHHHHHc--CCCEEECC----
Confidence            468899999999999996   333343 555556666554 68888766     677888888854  89999862    


Q ss_pred             CCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAAS-AGANCIVAG  130 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~G  130 (157)
                      |  +++-..+.++.++++.+. ...++|.++||||.+|++++.+ +|++.|=..
T Consensus       187 G--~~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~l~~~tG~~~~H~S  238 (287)
T 3iwp_A          187 G--CDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCS  238 (287)
T ss_dssp             T--TSSSTTTTHHHHHHHHHHHTTSSEEEECTTCCTTTHHHHHHHHCCSEEEEC
T ss_pred             C--CCCChHHhHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHhhCCCEEeEC
Confidence            2  223335667777777665 3458999999999999999877 999988544

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=98.85  E-value=2.8e-10  Score=89.61  Aligned_cols=138  Identities=13%  Similarity=0.196  Sum_probs=95.1

Q ss_pred             HHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc---
Q 031554            8 YVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ---   83 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq---   83 (157)
                      -.+.+.++|+|+|   -|+.- .+ .+....+++...++=+.....|--|.++.+-   .+.|+|-. +-+||++.-   
T Consensus        82 EAqilea~GaD~I---Desevltp-ad~~~~I~k~~f~vpfv~~~~~l~EAlrri~---eGA~mIrT-tge~gtg~v~~a  153 (291)
T 3o07_A           82 EAQIIEALEVDYI---DESEVLTP-ADWTHHIEKDKFKVPFVCGAKDLGEALRRIN---EGAAMIRT-KGEAGTGDVSEA  153 (291)
T ss_dssp             HHHHHHHTTCSEE---EEETTSCC-SCSSCCCCGGGCSSCEEEEESSHHHHHHHHH---HTCSEEEE-CCCTTSCCTHHH
T ss_pred             HHHHHHHcCCCEE---ecccCCCH-HHHHHHhhhhcCCCcEEeeCCCHHHHHHHHH---CCCCEEEe-cCcCCCccHHHH
Confidence            3556778999999   22211 23 4555566665444444444456666677777   78998853 224554421   


Q ss_pred             ---------------cc------------chhHHHHHHHHHhhCCCCcEEE--EcCC-CHhhHHHHHHcCCCEEEEcccc
Q 031554           84 ---------------KF------------MPEMMDKVRSLRNRYPSLDIEV--DGGL-GPSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        84 ---------------~~------------~~~~~~ki~~l~~~~~~~~I~v--dGGI-~~~~i~~~~~~Gad~vV~GSai  133 (157)
                                     .+            ....++.|+++++. +++++.+  .||| |++++.++.++|+|++.+||++
T Consensus       154 v~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI  232 (291)
T 3o07_A          154 VKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGI  232 (291)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGG
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHH
Confidence                           01            11236677777776 4677654  6999 7999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHh
Q 031554          134 FGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       134 ~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      |+++||....+++.+.+..+.
T Consensus       233 ~~s~DP~~~Akafv~Av~~~~  253 (291)
T 3o07_A          233 FKSSNPVRLATAVVEATTHFD  253 (291)
T ss_dssp             GGSSCHHHHHHHHHHHHHTTT
T ss_pred             hCCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999887543

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=98.84  E-value=5.9e-08  Score=75.94  Aligned_cols=132  Identities=17%  Similarity=0.189  Sum_probs=90.2

Q ss_pred             CCCCEEEE--cccC---CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554           15 AGASGFTF--HVEI---SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus        15 ~gad~v~v--h~e~---~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      .|-+||-+  +.|.   ..++ .+++++++..   |+.+--.++  .+++..+.+.+.  +++.|+-++..-|. |+...
T Consensus        90 ~gt~~iKlEvi~d~~~l~pD~-~~tv~aa~~L~k~Gf~Vlpy~~--~D~~~ak~l~~~--G~~aVmPlg~pIGs-G~Gi~  163 (268)
T 2htm_A           90 TGERWVKLEVIPDPTYLLPDP-LETLKAAERLIEEDFLVLPYMG--PDLVLAKRLAAL--GTATVMPLAAPIGS-GWGVR  163 (268)
T ss_dssp             HCCSEEBCCCCSCTTTTCCCH-HHHHHHHHHHHHTTCEECCEEC--SCHHHHHHHHHH--TCSCBEEBSSSTTT-CCCST
T ss_pred             cCcceeeeeeccCccccCcCH-HHHHHHHHHHHHCCCEEeeccC--CCHHHHHHHHhc--CCCEEEecCccCcC-CcccC
Confidence            36777543  3222   2345 7888887776   876442332  344555555543  77888544333354 43331


Q ss_pred             hhHHHHHHHHHhhCCC-CcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           87 PEMMDKVRSLRNRYPS-LDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~-~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                        ..+.++++++..++ ++|.+||||. ++.+....+.|||++++||+|++++||....++|++.++-.|
T Consensus       164 --~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~agr  231 (268)
T 2htm_A          164 --TRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGR  231 (268)
T ss_dssp             --THHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHH
Confidence              13346777774456 8999999999 799999999999999999999999999999999998876443

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=98.82  E-value=1.9e-08  Score=77.45  Aligned_cols=112  Identities=15%  Similarity=0.249  Sum_probs=77.8

Q ss_pred             hCCCCEEEEcccCCcchHHHHH-----HHHHHcCC-----ceEE----EecCCCCH------------HhHHhhHhc--C
Q 031554           14 KAGASGFTFHVEISKDNWQELV-----QRIKSKGM-----RPGV----ALKPGTSV------------EEVYPLVEG--A   65 (157)
Q Consensus        14 ~~gad~v~vh~e~~~~~~~~~i-----~~ir~~g~-----~~gl----~l~~~t~~------------~~~~~~~~~--~   65 (157)
                      ..|||.+.|+.-...+. ..++     +.++++|.     ++-.    .++|+++.            +.+..+...  .
T Consensus        73 ~~gaD~~l~pslln~~~-~~~i~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~  151 (228)
T 3vzx_A           73 VPGFDLYFIPSVLNSKN-ADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSEL  151 (228)
T ss_dssp             CSCCSEEEEEEETTBSS-GGGTTHHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHH
T ss_pred             cccCCEEEEeeecCCCC-cchhhhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHH
Confidence            35999999994333332 2444     78899995     5544    58998887            555555531  0


Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      -..++|-+-+  .|..+      ..+.++++++...+.++.+.|||+ +++++++. .|||.+|+||++++
T Consensus       152 ~g~~~VYld~--sG~~~------~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~  213 (228)
T 3vzx_A          152 LQLPIFYLEY--SGVLG------DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE  213 (228)
T ss_dssp             TTCSEEEEEC--TTSCC------CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH
T ss_pred             cCCCEEEecC--CCCcC------CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhc
Confidence            2356665533  23222      355667777775578999999998 79999988 79999999999997

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=98.79  E-value=2.9e-08  Score=78.41  Aligned_cols=100  Identities=16%  Similarity=0.236  Sum_probs=71.4

Q ss_pred             cccCCcchHHHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHh
Q 031554           23 HVEISKDNWQELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRN   98 (157)
Q Consensus        23 h~e~~~~~~~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~   98 (157)
                      |..+.... .+.++.+|+..   .++++.+  +|. +.+++.++  .++|+|.+.+         +.++.+++ ++.++.
T Consensus       161 Hi~~~g~~-~~ai~~~r~~~~~~~~i~vev--~tl-ee~~~A~~--aGaD~I~ld~---------~~~~~l~~~v~~l~~  225 (273)
T 2b7n_A          161 HLRHVKDL-KSFLTHARKNLPFTAKIEIEC--ESF-EEAKNAMN--AGADIVMCDN---------LSVLETKEIAAYRDA  225 (273)
T ss_dssp             HHTTCSSH-HHHHHHHGGGSCTTCCEEEEE--SSH-HHHHHHHH--HTCSEEEEET---------CCHHHHHHHHHHHHH
T ss_pred             HHHHhCCH-HHHHHHHHHhCCCCceEEEEc--CCH-HHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHHhhc
Confidence            44443444 67888888864   4677766  455 33443333  5899998853         33455554 334444


Q ss_pred             hCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554           99 RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        99 ~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      .+|+++|.+.|||+++|++++.++|||.+.+||++++++
T Consensus       226 ~~~~~~i~AsGGI~~~ni~~~~~aGaD~i~vGs~i~~a~  264 (273)
T 2b7n_A          226 HYPFVLLEASGNISLESINAYAKSGVDAISVGALIHQAT  264 (273)
T ss_dssp             HCTTCEEEEESSCCTTTHHHHHTTTCSEEECTHHHHTCC
T ss_pred             cCCCcEEEEECCCCHHHHHHHHHcCCcEEEEcHHhcCCC
Confidence            567899999999999999999999999999999998654

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=98.76  E-value=2.3e-07  Score=73.84  Aligned_cols=134  Identities=17%  Similarity=0.272  Sum_probs=90.8

Q ss_pred             ChHHHH---HHHHhCCCC-EEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHHhHHh---hHhc
Q 031554            4 NPLDYV---EPLGKAGAS-GFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYP---LVEG   64 (157)
Q Consensus         4 ~p~~~i---~~~~~~gad-~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~---~~~~   64 (157)
                      +++.|.   +.+.++|+| .|.+|.-++           .+.+.++++++|+. ++.+.+=+.|+.+.+.+.+   .++-
T Consensus       104 ~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~  183 (311)
T 1jub_A          104 SAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQ  183 (311)
T ss_dssp             SHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence            344444   455788999 999986321           11226788888876 5666777888766544322   2222


Q ss_pred             CCCCCeEEEEee-------e-----C---------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHH
Q 031554           65 ANPVEMVLVMTV-------E-----P---------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAAS  121 (157)
Q Consensus        65 ~~~~d~vl~m~v-------~-----p---------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~  121 (157)
                       .++|.|.+-..       +     |         |..|....+..++.++++++..+ +++|.+.|||+ .+++.++..
T Consensus       184 -~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~  262 (311)
T 1jub_A          184 -FPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLL  262 (311)
T ss_dssp             -SCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHH
T ss_pred             -cCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH
Confidence             47899876422       1     0         11233334456788899888754 79999999995 899999889


Q ss_pred             cCCCEEEEcccccC-CCC
Q 031554          122 AGANCIVAGSSVFG-APE  138 (157)
Q Consensus       122 ~Gad~vV~GSai~~-~~d  138 (157)
                      +|||.+.+||+++. .++
T Consensus       263 ~GAd~V~vg~~~l~~~p~  280 (311)
T 1jub_A          263 CGATMLQIGTALHKEGPA  280 (311)
T ss_dssp             HTCSEEEECHHHHHHCTH
T ss_pred             cCCCEEEEchHHHhcCcH
Confidence            99999999999884 554

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=98.75  E-value=5.6e-07  Score=69.19  Aligned_cols=136  Identities=22%  Similarity=0.346  Sum_probs=97.3

Q ss_pred             HHHHHhCCCCEEEEcc-c--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC---CCCC
Q 031554            9 VEPLGKAGASGFTFHV-E--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP---GFGG   82 (157)
Q Consensus         9 i~~~~~~gad~v~vh~-e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p---G~~g   82 (157)
                      +.++.++|||+|.+.. |  .....+.+.++.++++|+.+-+-++  +..+. +.+..  -..++|   +.+|   -.+|
T Consensus        78 ~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg--e~~e~-~~~~~--~~~~iI---ayep~waiGtG  149 (226)
T 1w0m_A           78 LENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAP--DPRTS-LAAAA--LGPHAV---AVEPPELIGTG  149 (226)
T ss_dssp             HHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEES--SHHHH-HHHHH--TCCSEE---EECCGGGTTTS
T ss_pred             HHHHHHcCCCEEEEeeeeccCCHHHHHHHHHHHHHCCCEEEEEeC--CHHHH-HHHhc--CCCCEE---EEcChhhhccC
Confidence            5788999999988764 3  3222347888899999999888885  44432 22221  134444   5566   2234


Q ss_pred             ---cccchhHHHH-HHHHHhhCCCCcEEEEcCCCH-hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           83 ---QKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        83 ---q~~~~~~~~k-i~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                         +.+.++.++. .+.+|+...++.|...|||+. +....+...|+|++-+|+++.+++|+.+.++.+.+.+.+
T Consensus       150 ~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~~~~~i~~l~~~~~~  224 (226)
T 1w0m_A          150 RAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSE  224 (226)
T ss_dssp             CCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcCHHHHHHHHHHHHHh
Confidence               5677764444 444455556789999999995 556678999999999999999999999999998887764

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.73  E-value=5.5e-07  Score=76.50  Aligned_cols=126  Identities=19%  Similarity=0.219  Sum_probs=91.6

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHc--CCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSK--GMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~--g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ....++.+.++|+|.|.+|.-.... ...+.++++|+.  +..+++ .+   +..+.++.+.+  .++|+|.+ +.+||.
T Consensus       256 ~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v---~t~~~a~~l~~--aGad~I~v-g~~~G~  329 (514)
T 1jcn_A          256 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV---VTAAQAKNLID--AGVDGLRV-GMGCGS  329 (514)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE---CSHHHHHHHHH--HTCSEEEE-CSSCSC
T ss_pred             hHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc---chHHHHHHHHH--cCCCEEEE-CCCCCc
Confidence            4667788999999999998654322 125889999997  666554 24   44566666665  48999988 777762


Q ss_pred             CC--cc---c---chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC
Q 031554           81 GG--QK---F---MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        81 ~g--q~---~---~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      ..  ..   +   ....+..++++++.. +++|.++|||+ ..++.++..+|||.+.+||++...+
T Consensus       330 ~~~t~~~~~~g~~~~~~~~~~~~~~~~~-~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~  394 (514)
T 1jcn_A          330 ICITQEVMACGRPQGTAVYKVAEYARRF-GVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATT  394 (514)
T ss_dssp             CBTTBCCCSCCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTST
T ss_pred             ccccccccCCCccchhHHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCC
Confidence            20  00   0   234566777777653 79999999997 7999999999999999999987643

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=98.73  E-value=5.2e-08  Score=77.37  Aligned_cols=92  Identities=17%  Similarity=0.302  Sum_probs=71.0

Q ss_pred             HHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEE
Q 031554           32 QELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEV  107 (157)
Q Consensus        32 ~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~v  107 (157)
                      ...++.+|++.   .++++.+  +| ++.+++.++  .++|+|++-.         |.++.+++ ++.++..++++++++
T Consensus       180 ~~av~~ar~~~~~~~~I~VEV--~t-leea~eA~~--aGaD~I~LDn---------~~~e~l~~av~~l~~~~~~v~ieA  245 (285)
T 1o4u_A          180 ERAVQEVRKIIPFTTKIEVEV--EN-LEDALRAVE--AGADIVMLDN---------LSPEEVKDISRRIKDINPNVIVEV  245 (285)
T ss_dssp             HHHHHHHHTTSCTTSCEEEEE--SS-HHHHHHHHH--TTCSEEEEES---------CCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHHHHhCCCCceEEEEe--CC-HHHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHHhhccCCCceEEE
Confidence            67888899875   6778876  44 566655554  5899998853         44455554 444555556799999


Q ss_pred             EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      -||||++|++++.++|+|++++||++++++
T Consensus       246 SGGIt~eni~~~a~tGVD~IsvGslt~sa~  275 (285)
T 1o4u_A          246 SGGITEENVSLYDFETVDVISSSRLTLQEV  275 (285)
T ss_dssp             EECCCTTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred             ECCCCHHHHHHHHHcCCCEEEEeHHHcCCC
Confidence            999999999999999999999999988764

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=98.72  E-value=4.3e-07  Score=75.21  Aligned_cols=125  Identities=22%  Similarity=0.261  Sum_probs=82.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-CCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-GMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      ...++.+.++|+|.|.+..... ...+.+.++++|+. +..+.+ .+   +..+.++.+.+  .++|.|.+ +..||.-.
T Consensus       146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V---~t~e~A~~a~~--aGAD~I~v-G~g~Gs~~  219 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNV---VTEEATKELIE--NGADGIKV-GIGPGSIC  219 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEE---CSHHHHHHHHH--TTCSEEEE-CC------
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeec---CCHHHHHHHHH--cCCCEEEE-eCCCCcCc
Confidence            5689999999999998732221 22225788888886 766654 23   34566666665  58999998 55555211


Q ss_pred             --cc---cchhHHHHHHHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           83 --QK---FMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        83 --q~---~~~~~~~ki~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                        +.   +....+.-+.++++.  ..+++|.++|||. .+++..+.++|||.+.+||++...
T Consensus       220 ~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t  281 (400)
T 3ffs_A          220 TTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGT  281 (400)
T ss_dssp             ---CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTB
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcC
Confidence              10   111234445555443  1479999999996 899999999999999999998764

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=98.70  E-value=8.8e-07  Score=68.06  Aligned_cols=132  Identities=20%  Similarity=0.295  Sum_probs=94.4

Q ss_pred             HHHHHhCCCCEEEEcc-c--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC---CCC
Q 031554            9 VEPLGKAGASGFTFHV-E--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG---FGG   82 (157)
Q Consensus         9 i~~~~~~gad~v~vh~-e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG---~~g   82 (157)
                      +.++.++|||+|.+.. |  .....+.+.++.++++|+.+-+-+.  +..+. +.+..  -..++|   +.+|-   .+|
T Consensus        81 ~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg--e~~e~-~~~~~--~~~~iI---ayep~waiGtG  152 (225)
T 1hg3_A           81 PEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSN--NPAVS-AAVAA--LNPDYV---AVEPPELIGTG  152 (225)
T ss_dssp             HHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEES--SHHHH-HHHHT--TCCSEE---EECCTTTTTTS
T ss_pred             HHHHHHcCCCEEEECcchhcCCHHHHHHHHHHHHHCCCEEEEEeC--CHHHH-HHHhc--CCCCEE---EEeChhhhccC
Confidence            5788999999998864 4  3322347888899999999888884  44332 22331  133444   55762   234


Q ss_pred             ---cccchhHHHH-HHHHHhhCCCCcEEEEcCCCH-hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           83 ---QKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        83 ---q~~~~~~~~k-i~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                         +.+.++.++. .+.+|+...+..|...|||+. +....+...|+|++-+|+++.+++|+.+.+++|.+
T Consensus       153 ~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~~~~~i~~l~~  223 (225)
T 1hg3_A          153 IPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVS  223 (225)
T ss_dssp             CCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHH
T ss_pred             CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcCHHHHHHHHHh
Confidence               6777774554 444455556789999999995 55667899999999999999999999999888764

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=98.68  E-value=7.9e-07  Score=72.02  Aligned_cols=130  Identities=18%  Similarity=0.229  Sum_probs=88.9

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCc---------c--hHHHHHHHHHHc-CCceEEEe-cCCCCHHhHHhhHhcCCCCCe
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISK---------D--NWQELVQRIKSK-GMRPGVAL-KPGTSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~---------~--~~~~~i~~ir~~-g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~   70 (157)
                      +|..+.+.+.++|+|.+.+|...+.         .  .+.+.++++|+. +..+.+-+ .+....+.++...+  .++|.
T Consensus       128 ~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~--~Gad~  205 (349)
T 1p0k_A          128 TAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYE--AGAAA  205 (349)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHH--HTCSE
T ss_pred             CHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH--cCCCE
Confidence            4555666677889999999976431         1  136788888875 55555544 45456777766665  48999


Q ss_pred             EEEEeeeCCCC-------Cc--------ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554           71 VLVMTVEPGFG-------GQ--------KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        71 vl~m~v~pG~~-------gq--------~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      |.+-. +.|+.       -+        .......+.|+++++..++++|.++|||+ .+++.++..+|||.+.+||+++
T Consensus       206 I~v~~-~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l  284 (349)
T 1p0k_A          206 VDIGG-YGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFL  284 (349)
T ss_dssp             EEEEC----------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             EEEcC-CCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence            98742 22210       10        11233566677777765689999999998 8999999999999999999876


Q ss_pred             CC
Q 031554          135 GA  136 (157)
Q Consensus       135 ~~  136 (157)
                      ..
T Consensus       285 ~~  286 (349)
T 1p0k_A          285 KA  286 (349)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=98.67  E-value=2e-07  Score=74.29  Aligned_cols=146  Identities=16%  Similarity=0.262  Sum_probs=96.8

Q ss_pred             ChHHHH---HHHHhCCCC---EEEEcccCCc-----------chHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhH---
Q 031554            4 NPLDYV---EPLGKAGAS---GFTFHVEISK-----------DNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLV---   62 (157)
Q Consensus         4 ~p~~~i---~~~~~~gad---~v~vh~e~~~-----------~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~---   62 (157)
                      +++.|.   +.+.++|+|   .|.+|.-++.           +.+.++++++|+. +..+.+-+.+..+.+.+.++.   
T Consensus       104 ~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~  183 (314)
T 2e6f_A          104 SVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVL  183 (314)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHH
Confidence            344444   445677899   9999864221           1225788888886 777777788876655533322   


Q ss_pred             hcCCC-CCeEEEEee-------eC--------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHH
Q 031554           63 EGANP-VEMVLVMTV-------EP--------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA  119 (157)
Q Consensus        63 ~~~~~-~d~vl~m~v-------~p--------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~  119 (157)
                      .- .+ +|+|.+...       ++              |..|....+..++.++++++..++++|.+.|||+ .+++.++
T Consensus       184 ~~-aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~  262 (314)
T 2e6f_A          184 NE-FPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLH  262 (314)
T ss_dssp             HT-CTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred             Hh-cCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHH
Confidence            11 46 898876431       10              1223333355678889998876789999999997 8999999


Q ss_pred             HHcCCCEEEEcccccC-CCCHH-HHHHHHHHHH
Q 031554          120 ASAGANCIVAGSSVFG-APEPA-HVISLMRKSV  150 (157)
Q Consensus       120 ~~~Gad~vV~GSai~~-~~d~~-~~~~~l~~~~  150 (157)
                      ..+|||.+.+||+++. .++.- +..+.++..+
T Consensus       263 l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~  295 (314)
T 2e6f_A          263 ILAGASMVQVGTALQEEGPGIFTRLEDELLEIM  295 (314)
T ss_dssp             HHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHH
Confidence            9999999999999884 66543 2333444433

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=98.66  E-value=2.3e-07  Score=73.63  Aligned_cols=92  Identities=18%  Similarity=0.314  Sum_probs=70.6

Q ss_pred             HHHHHHHHHcCC--ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEE
Q 031554           32 QELVQRIKSKGM--RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~g~--~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vd  108 (157)
                      ...++.+|++.-  ++.+.+.  | ++.+++.++  .++|+|++-.         |.++.+++ ++.++..+++++|++-
T Consensus       182 ~~av~~ar~~~~~~~I~Vev~--t-~eea~eal~--aGaD~I~LDn---------~~~~~~~~~v~~l~~~~~~v~ieaS  247 (284)
T 1qpo_A          182 VDALRAVRNAAPDLPCEVEVD--S-LEQLDAVLP--EKPELILLDN---------FAVWQTQTAVQRRDSRAPTVMLESS  247 (284)
T ss_dssp             HHHHHHHHHHCTTSCEEEEES--S-HHHHHHHGG--GCCSEEEEET---------CCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEeC--C-HHHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHHhhccCCCeEEEEE
Confidence            678888888754  6777774  4 566666664  5899998854         33444443 5666665678999999


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      ||||++|++++.++|+|++++|+.+.+++
T Consensus       248 GGIt~~~i~~~a~tGVD~isvG~l~~~a~  276 (284)
T 1qpo_A          248 GGLSLQTAATYAETGVDYLAVGALTHSVR  276 (284)
T ss_dssp             SSCCTTTHHHHHHTTCSEEECGGGTSSBC
T ss_pred             CCCCHHHHHHHHhcCCCEEEECHHHcCCC
Confidence            99999999999999999999999887654

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=98.65  E-value=5.7e-08  Score=77.63  Aligned_cols=92  Identities=21%  Similarity=0.394  Sum_probs=66.5

Q ss_pred             HHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEE
Q 031554           32 QELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEV  107 (157)
Q Consensus        32 ~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~v  107 (157)
                      ...++.+|+..   .++++.+  +|. +.+.+.++  .++|+|.+.+         |.++.+++ ++.++..+++++|.+
T Consensus       184 ~~ai~~~r~~~~~~~~i~vev--~tl-ee~~~A~~--aGaD~I~ld~---------~~~~~l~~~v~~l~~~~~~~~I~A  249 (299)
T 2jbm_A          184 EKAVRAARQAADFALKVEVEC--SSL-QEAVQAAE--AGADLVLLDN---------FKPEELHPTATVLKAQFPSVAVEA  249 (299)
T ss_dssp             HHHHHHHHHHHTTTSCEEEEE--SSH-HHHHHHHH--TTCSEEEEES---------CCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHHHHhCCcCCeEEEec--CCH-HHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHHhhccCCCeeEEE
Confidence            45677777652   4677766  455 44443333  6899998853         23455554 334444567899999


Q ss_pred             EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      .||||++|++++.++|||.+.+||++++++
T Consensus       250 SGGIt~~ni~~~~~aGaD~i~vGs~i~~a~  279 (299)
T 2jbm_A          250 SGGITLDNLPQFCGPHIDVISMGMLTQAAP  279 (299)
T ss_dssp             ESSCCTTTHHHHCCTTCCEEECTHHHHSCC
T ss_pred             ECCCCHHHHHHHHHCCCCEEEEChhhcCCC
Confidence            999999999999999999999999888754

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=98.62  E-value=1e-06  Score=74.01  Aligned_cols=132  Identities=12%  Similarity=0.168  Sum_probs=98.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      +|. .+.++..+|||.|.+-....+. .+.++++.+++.|+.+-+.++  |.-|..+.+.   -+.|+|.+=  +.+...
T Consensus       119 d~~-Qi~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh--~~eE~~~A~~---lga~iIGin--nr~L~t  190 (452)
T 1pii_A          119 DPY-QIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVS--NEEEQERAIA---LGAKVVGIN--NRDLRD  190 (452)
T ss_dssp             SHH-HHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEEC--SHHHHHHHHH---TTCSEEEEE--SEETTT
T ss_pred             CHH-HHHHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeC--CHHHHHHHHH---CCCCEEEEe--CCCCCC
Confidence            455 4666899999999998776653 458899999999999988884  4433333333   478877442  223322


Q ss_pred             cccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           83 QKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                        |.. .++...++.+.. ++..+..-|||+ ++++..+.++ +|+|++|++|.+++||.+++++|.
T Consensus       191 --~~~-dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~~d~~~~~~~l~  253 (452)
T 1pii_A          191 --LSI-DLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDDLHAAVRRVL  253 (452)
T ss_dssp             --TEE-CTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTCSCHHHHHHHHH
T ss_pred             --CCC-CHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHH
Confidence              222 255555665544 368899999999 8999999999 999999999999999999998886

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=98.61  E-value=1.2e-06  Score=69.90  Aligned_cols=132  Identities=12%  Similarity=0.132  Sum_probs=89.4

Q ss_pred             HHHHHHhCCCCEEEEcccCCcc----h---HHHHHHHHHHcCCceEEEecC----CCCHHhHH---hhHhcCCCCCeEEE
Q 031554            8 YVEPLGKAGASGFTFHVEISKD----N---WQELVQRIKSKGMRPGVALKP----GTSVEEVY---PLVEGANPVEMVLV   73 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~----~---~~~~i~~ir~~g~~~gl~l~~----~t~~~~~~---~~~~~~~~~d~vl~   73 (157)
                      -++.+.+.|||.|.+|...-+.    .   +.++.+.++++|+.+.+.-..    .++.+.+.   .+..- -++|+|=.
T Consensus       130 ~ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~e-lGAD~VKt  208 (295)
T 3glc_A          130 SMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAE-MGAQIIKT  208 (295)
T ss_dssp             CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHH-TTCSEEEE
T ss_pred             HHHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHH-hCCCEEEe
Confidence            3678899999999999553221    1   135667778889876553221    13333222   22211 48898754


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH------hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------STIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~------~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      -  .|   +     +.+   +++.+.. .++|.+-||++.      +.++...++||+++++||+||+.+||.+.++.++
T Consensus       209 ~--~t---~-----e~~---~~vv~~~-~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp~~~~~al~  274 (295)
T 3glc_A          209 Y--YV---E-----KGF---ERIVAGC-PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQ  274 (295)
T ss_dssp             E--CC---T-----TTH---HHHHHTC-SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHH
T ss_pred             C--CC---H-----HHH---HHHHHhC-CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcCHHHHHHHHH
Confidence            2  12   2     223   4444443 578999999984      3677888999999999999999999999999999


Q ss_pred             HHHHHHh
Q 031554          148 KSVEDAQ  154 (157)
Q Consensus       148 ~~~~~~~  154 (157)
                      +++.+.+
T Consensus       275 ~ivh~~~  281 (295)
T 3glc_A          275 AVVHHNE  281 (295)
T ss_dssp             HHHHHCC
T ss_pred             HHHhCCC
Confidence            9877643

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=98.57  E-value=1.1e-06  Score=72.65  Aligned_cols=124  Identities=23%  Similarity=0.320  Sum_probs=83.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHc--CCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSK--GMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-   80 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~-   80 (157)
                      ...++.+.++|+|.|.++.-..+ ....+.++++|+.  ++.+.+ .+   +..+.++.+.+  .++|+|.+ +..||. 
T Consensus       155 ~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v---~~~~~a~~a~~--~Gad~I~v-g~~~G~~  228 (404)
T 1eep_A          155 IERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNI---VTKEAALDLIS--VGADCLKV-GIGPGSI  228 (404)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEE---CSHHHHHHHHT--TTCSEEEE-CSSCSTT
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCC---CcHHHHHHHHh--cCCCEEEE-CCCCCcC
Confidence            45567788899999998532221 2226788888887  666665 23   34566666665  58999998 666653 


Q ss_pred             ------CCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           81 ------GGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        81 ------~gq~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                            ++... ....+..+.++.+. .+++|.++|||+ .+++.++..+|||.+.+||++..+
T Consensus       229 ~~~~~~~~~g~p~~~~l~~v~~~~~~-~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~  291 (404)
T 1eep_A          229 CTTRIVAGVGVPQITAICDVYEACNN-TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT  291 (404)
T ss_dssp             SHHHHHHCCCCCHHHHHHHHHHHHTT-SSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTB
T ss_pred             cCccccCCCCcchHHHHHHHHHHHhh-cCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcC
Confidence                  11100 11233334433332 379999999998 899999999999999999998643

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.55  E-value=3e-06  Score=71.77  Aligned_cols=128  Identities=20%  Similarity=0.224  Sum_probs=85.3

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      +....++.+.++|+|.+.++...... .+.+.++++|+.  +..+.+ -+. ...+.++.+.+  .++|+|.+ +.-||.
T Consensus       229 ~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~-g~v-~t~e~a~~l~~--aGaD~I~v-g~g~Gs  303 (490)
T 4avf_A          229 DTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG-GNI-ATAEAAKALAE--AGADAVKV-GIGPGS  303 (490)
T ss_dssp             THHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE-EEE-CSHHHHHHHHH--TTCSEEEE-CSSCST
T ss_pred             chHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEE-eee-CcHHHHHHHHH--cCCCEEEE-CCCCCc
Confidence            45678889999999999998554322 225788888886  433333 222 34455565655  58999987 334442


Q ss_pred             CC--c---ccchhHHHHHHHHHhh--CCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCC
Q 031554           81 GG--Q---KFMPEMMDKVRSLRNR--YPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        81 ~g--q---~~~~~~~~ki~~l~~~--~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ..  .   .+....+.-+.++++.  ..+++|.+|||| +.+++..+.++|||.+.+||++...
T Consensus       304 ~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~~  367 (490)
T 4avf_A          304 ICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGT  367 (490)
T ss_dssp             TCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTTB
T ss_pred             CCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhcC
Confidence            10  0   0111234445555442  237999999999 5899999999999999999998763

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=98.50  E-value=1.2e-06  Score=71.21  Aligned_cols=130  Identities=15%  Similarity=0.265  Sum_probs=84.3

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCCc----------------chHHHHHHHHHHc-CCceEEEecCC--C--C----H
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEISK----------------DNWQELVQRIKSK-GMRPGVALKPG--T--S----V   55 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~-g~~~gl~l~~~--t--~----~   55 (157)
                      +|..|.+   .+.++|+|.|-+|.-.+.                +.+.++++.+++. ++.+.+-+.+.  +  +    .
T Consensus        68 ~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~  147 (350)
T 3b0p_A           68 DPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLA  147 (350)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHH
Confidence            5665554   446779999999964321                1235677888874 77666644322  1  1    2


Q ss_pred             HhHHhhHhcCCCCCeEEEEeeeC--CCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554           56 EEVYPLVEGANPVEMVLVMTVEP--GFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA  129 (157)
Q Consensus        56 ~~~~~~~~~~~~~d~vl~m~v~p--G~~gq~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~  129 (157)
                      +.++.+.+  .++|+|.+.+...  |+.|..   ..+..++.++++++..++++|.+.|||+ .+.+.++.+ |||.+.+
T Consensus       148 ~~a~~l~~--aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~i  224 (350)
T 3b0p_A          148 QSVEAMAE--AGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVML  224 (350)
T ss_dssp             HHHHHHHH--TTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEE
T ss_pred             HHHHHHHH--cCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence            33334433  5899998754332  233321   1123567788888887789999999995 899999988 9999999


Q ss_pred             cccccCC
Q 031554          130 GSSVFGA  136 (157)
Q Consensus       130 GSai~~~  136 (157)
                      |++++..
T Consensus       225 GRa~l~~  231 (350)
T 3b0p_A          225 GRAVYED  231 (350)
T ss_dssp             CHHHHHC
T ss_pred             CHHHHhC
Confidence            9987643

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=98.46  E-value=1.5e-06  Score=68.03  Aligned_cols=131  Identities=17%  Similarity=0.048  Sum_probs=87.1

Q ss_pred             HHHHHHhCCCCEEEEcccCCcc-----hHHHHHHHHHHcC-CceEEEecCC--------------------CCH-HhHHh
Q 031554            8 YVEPLGKAGASGFTFHVEISKD-----NWQELVQRIKSKG-MRPGVALKPG--------------------TSV-EEVYP   60 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~-----~~~~~i~~ir~~g-~~~gl~l~~~--------------------t~~-~~~~~   60 (157)
                      -++.+. +|||.|.+...+..+     | +.+-+.+++.| -++.+++...                    +++ +.++.
T Consensus        89 ~~~~~l-~Ga~~Viigs~a~~~~g~~~p-~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~  166 (260)
T 2agk_A           89 NCLEWL-KWASKVIVTSWLFTKEGHFQL-KRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRE  166 (260)
T ss_dssp             THHHHT-TTCSCEEECGGGBCTTCCBCH-HHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHH
T ss_pred             HHHHHh-cCCCEEEECcHHHhhcCCCCH-HHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHH
Confidence            355666 999999999887777     7 55555566666 3443333211                    235 56666


Q ss_pred             hHhcCCCCCeEEEEeeeC-CCCCcccchhHHHHHHHHHhhCC---CCcEEEEcCCC-HhhHHHHHHc--CCCEEEEcccc
Q 031554           61 LVEGANPVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRNRYP---SLDIEVDGGLG-PSTIAEAASA--GANCIVAGSSV  133 (157)
Q Consensus        61 ~~~~~~~~d~vl~m~v~p-G~~gq~~~~~~~~ki~~l~~~~~---~~~I~vdGGI~-~~~i~~~~~~--Gad~vV~GSai  133 (157)
                      +.   ..++.+++.++.. |.. +-+   .++.++++++..+   ++++.+-|||+ ++++.++.+.  |+|.+++||++
T Consensus       167 ~~---~~a~~il~t~i~~dG~~-~G~---d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al  239 (260)
T 2agk_A          167 LR---KYTNEFLIHAADVEGLC-GGI---DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL  239 (260)
T ss_dssp             HT---TTCSEEEEEC--------CCC---CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred             HH---HhcCEEEEEeeccccCc-CCC---CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence            65   4499999987765 321 222   4566677766644   78999999998 7999999987  99999999996


Q ss_pred             --cCCC--CHHHHHHHHH
Q 031554          134 --FGAP--EPAHVISLMR  147 (157)
Q Consensus       134 --~~~~--d~~~~~~~l~  147 (157)
                        |..+  ++.+..+.++
T Consensus       240 ~l~~g~~~~~~~~~~~~~  257 (260)
T 2agk_A          240 DIFGGNLVKFEDCCRWNE  257 (260)
T ss_dssp             GGGTCSSBCHHHHHHHHH
T ss_pred             HHcCCCCCCHHHHHHHHH
Confidence              6433  4566666554

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=98.45  E-value=5.1e-06  Score=67.53  Aligned_cols=148  Identities=16%  Similarity=0.223  Sum_probs=98.2

Q ss_pred             cChHHHHHHH---HhCCCC-EEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhc--
Q 031554            3 TNPLDYVEPL---GKAGAS-GFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEG--   64 (157)
Q Consensus         3 ~~p~~~i~~~---~~~gad-~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~--   64 (157)
                      .+|++|.+.+   .++|++ ++.+..-++           .+.+.++++.+|+. .+-+.+=+.|+++...+.+.++.  
T Consensus       138 ~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~~~~~~~a~~~~~ag  217 (345)
T 3oix_A          138 MSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFN  217 (345)
T ss_dssp             SSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHhC
Confidence            3677777655   345877 998885421           12337788888876 45566668898888776666653  


Q ss_pred             CCCCCeEEEE-------eeeC------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcC
Q 031554           65 ANPVEMVLVM-------TVEP------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAG  123 (157)
Q Consensus        65 ~~~~d~vl~m-------~v~p------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~G  123 (157)
                      ...++.+...       .++.            |.+|....+..++.++++++..+ +++|...|||. .+++.+++.+|
T Consensus       218 a~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aG  297 (345)
T 3oix_A          218 XYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCG  297 (345)
T ss_dssp             TSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHT
T ss_pred             CCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhC
Confidence            2455555321       1221            12344444556888999998865 79999999998 79999999999


Q ss_pred             CCEEEEccc-ccCCCCHH-HHHHHHHHHH
Q 031554          124 ANCIVAGSS-VFGAPEPA-HVISLMRKSV  150 (157)
Q Consensus       124 ad~vV~GSa-i~~~~d~~-~~~~~l~~~~  150 (157)
                      ||.|-+||+ ++..+..- +..+.|++.+
T Consensus       298 Ad~V~igra~~~~gP~~~~~i~~~L~~~l  326 (345)
T 3oix_A          298 ASMVQIGTALHQEGPQIFKRITKELXAIM  326 (345)
T ss_dssp             CSEEEESHHHHHHCTHHHHHHHHHHHHHH
T ss_pred             CCEEEEChHHHhcChHHHHHHHHHHHHHH
Confidence            999999999 77655432 3333344433

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=98.43  E-value=6.1e-06  Score=64.33  Aligned_cols=127  Identities=17%  Similarity=0.217  Sum_probs=90.7

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      +|. .+.++..+|||.|.+-....+. .+.++++.+++.|+.+-+.++  +.-| ++..++  .+.+.|-+=..+-    
T Consensus       115 d~y-QI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh--~~~E-l~rAl~--~~a~iIGINNRnL----  184 (258)
T 4a29_A          115 KES-QIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILIN--DEND-LDIALR--IGARFIGIMSRDF----  184 (258)
T ss_dssp             SHH-HHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEES--SHHH-HHHHHH--TTCSEEEECSBCT----
T ss_pred             cHH-HHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcc--hHHH-HHHHhc--CCCcEEEEeCCCc----
Confidence            454 4556778899999998776653 347899999999999999885  3333 333332  4678774422222    


Q ss_pred             cccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHH
Q 031554           83 QKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAH  141 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~  141 (157)
                      ..|. -.++.-.++....| ++.+..-+||+ ++++..+.++|+|+|.+|+++.+++|+.+
T Consensus       185 ~tf~-vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~d~~~  244 (258)
T 4a29_A          185 ETGE-INKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNPEKIK  244 (258)
T ss_dssp             TTCC-BCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCTTHHH
T ss_pred             cccc-cCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCcHHH
Confidence            1121 23555566666655 57778899997 79999999999999999999999888743

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=98.43  E-value=1.5e-06  Score=68.98  Aligned_cols=90  Identities=21%  Similarity=0.313  Sum_probs=63.8

Q ss_pred             HHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE
Q 031554           32 QELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd  108 (157)
                      ...++.+|+..   .++|+.+  +| .+.+++.++  .++|+|++-.         |.+..++++.+.  ...++++++-
T Consensus       183 ~~av~~ar~~~~~~~~IgVev--~t-~eea~eA~~--aGaD~I~ld~---------~~~~~~k~av~~--v~~~ipi~As  246 (286)
T 1x1o_A          183 GEAVRRAKARAPHYLKVEVEV--RS-LEELEEALE--AGADLILLDN---------FPLEALREAVRR--VGGRVPLEAS  246 (286)
T ss_dssp             HHHHHHHHHHSCTTSCEEEEE--SS-HHHHHHHHH--HTCSEEEEES---------CCHHHHHHHHHH--HTTSSCEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEEe--CC-HHHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHH--hCCCCeEEEE
Confidence            55677777763   6788877  44 555555444  5899998753         233334332221  1136899999


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      ||||++|++++.++|+|.+.+||.+++++
T Consensus       247 GGIt~eni~~~a~tGvD~IsVgs~~~~a~  275 (286)
T 1x1o_A          247 GNMTLERAKAAAEAGVDYVSVGALTHSAK  275 (286)
T ss_dssp             SSCCHHHHHHHHHHTCSEEECTHHHHSCC
T ss_pred             cCCCHHHHHHHHHcCCCEEEEcHHHcCCC
Confidence            99999999999999999999999888654

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.42  E-value=9.2e-06  Score=69.14  Aligned_cols=125  Identities=18%  Similarity=0.272  Sum_probs=81.3

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      ....++.+.++|+|.+.+...... ..+.+.++++++.  +..+.+ -+.. ..+.++.+.+  .++|.|.+ +..||.-
T Consensus       257 ~~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~-g~v~-t~e~a~~~~~--aGad~i~v-g~g~gsi  331 (511)
T 3usb_A          257 AMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIA-GNVA-TAEATKALIE--AGANVVKV-GIGPGSI  331 (511)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEE-EEEC-SHHHHHHHHH--HTCSEEEE-CSSCSTT
T ss_pred             hHHHHHHHHhhccceEEecccccchhhhhhHHHHHHHhCCCceEEe-eeec-cHHHHHHHHH--hCCCEEEE-CCCCccc
Confidence            356678899999999999644321 1226788888886  333333 2223 4555565655  58999987 5555431


Q ss_pred             Cc-----ccchhHHHHHHHH---HhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           82 GQ-----KFMPEMMDKVRSL---RNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        82 gq-----~~~~~~~~ki~~l---~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .-     .+....+.-+.++   .+. .+++|.+||||+ ..++....++|||.+.+||++..
T Consensus       332 ~~~~~~~g~g~p~~~~l~~v~~~~~~-~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~  393 (511)
T 3usb_A          332 CTTRVVAGVGVPQLTAVYDCATEARK-HGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAG  393 (511)
T ss_dssp             CCHHHHHCCCCCHHHHHHHHHHHHHT-TTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             cccccccCCCCCcHHHHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHhc
Confidence            00     0111223333333   332 369999999996 89999999999999999999754

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=98.41  E-value=4.9e-06  Score=67.22  Aligned_cols=130  Identities=15%  Similarity=0.162  Sum_probs=88.0

Q ss_pred             HHHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-CCceEEEecCC------CCHH
Q 031554            9 VEPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-GMRPGVALKPG------TSVE   56 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g~~~gl~l~~~------t~~~   56 (157)
                      .+.+.++|+|.|-+|.-.         +      +          ..+.++++++|+. +..+++=+++.      .+.+
T Consensus       150 A~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~  229 (338)
T 1z41_A          150 AARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIA  229 (338)
T ss_dssp             HHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHH
T ss_pred             HHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHH
Confidence            345578999999999642         0      0          0126788888876 77888888874      3343


Q ss_pred             h----HHhhHhcCCCCCeEEEEeeeCCCCCc--ccch-hHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcC-CCEE
Q 031554           57 E----VYPLVEGANPVEMVLVMTVEPGFGGQ--KFMP-EMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCI  127 (157)
Q Consensus        57 ~----~~~~~~~~~~~d~vl~m~v~pG~~gq--~~~~-~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~G-ad~v  127 (157)
                      .    ++.+.+  .++|+|-+....  ...+  ...+ ..++.++++++.. +++|.+.||| +.+++.++++.| ||.|
T Consensus       230 ~~~~~a~~l~~--~Gvd~i~v~~~~--~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~s~~~a~~~l~~G~aD~V  304 (338)
T 1z41_A          230 DHIGFAKWMKE--QGVDLIDCSSGA--LVHADINVFPGYQVSFAEKIREQA-DMATGAVGMITDGSMAEEILQNGRADLI  304 (338)
T ss_dssp             HHHHHHHHHHH--TTCCEEEEECCC--SSCCCCCCCTTTTHHHHHHHHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEE
T ss_pred             HHHHHHHHHHH--cCCCEEEEecCc--cccCCCCCCccchHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHcCCceEE
Confidence            3    233322  478999775321  1111  1111 2355667777764 7899999999 699999999999 9999


Q ss_pred             EEcccccCCCCHHHHH
Q 031554          128 VAGSSVFGAPEPAHVI  143 (157)
Q Consensus       128 V~GSai~~~~d~~~~~  143 (157)
                      .+||+++..+|+-..+
T Consensus       305 ~iGR~~i~nPdl~~ki  320 (338)
T 1z41_A          305 FIGRELLRDPFFARTA  320 (338)
T ss_dssp             EECHHHHHCTTHHHHH
T ss_pred             eecHHHHhCchHHHHH
Confidence            9999998878865443

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.39  E-value=8.2e-06  Score=68.88  Aligned_cols=122  Identities=22%  Similarity=0.262  Sum_probs=83.7

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      ...++.+.++|+|.+.+|.....  .. .+.++++|+.  ++.+.+- + -+..+.++.+.+  .++|.|.+ +..+|..
T Consensus       239 ~~~a~~l~~aGvd~v~i~~~~G~~~~~-~e~i~~i~~~~p~~pvi~g-~-~~t~e~a~~l~~--~G~d~I~v-~~~~G~~  312 (494)
T 1vrd_A          239 MERVEKLVKAGVDVIVIDTAHGHSRRV-IETLEMIKADYPDLPVVAG-N-VATPEGTEALIK--AGADAVKV-GVGPGSI  312 (494)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCSSHHH-HHHHHHHHHHCTTSCEEEE-E-ECSHHHHHHHHH--TTCSEEEE-CSSCSTT
T ss_pred             HHHHHHHHHhCCCEEEEEecCCchHHH-HHHHHHHHHHCCCceEEeC-C-cCCHHHHHHHHH--cCCCEEEE-cCCCCcc
Confidence            56778899999999999764322  23 6888999887  6655442 1 244556666655  58999988 6665521


Q ss_pred             Ccc-----c---chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554           82 GQK-----F---MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        82 gq~-----~---~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ...     +   ....+..+.+.++. .+++|.++|||+ ..++.++..+|||.+.+|+++.
T Consensus       313 ~~~~~~~~~g~p~~~~l~~v~~~~~~-~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~l  373 (494)
T 1vrd_A          313 CTTRVVAGVGVPQLTAVMECSEVARK-YDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFA  373 (494)
T ss_dssp             CHHHHHHCCCCCHHHHHHHHHHHHHT-TTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             ccccccCCCCccHHHHHHHHHHHHhh-cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHh
Confidence            000     0   11233344443332 379999999995 8999999999999999999985

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=98.38  E-value=6.7e-06  Score=67.32  Aligned_cols=135  Identities=16%  Similarity=0.191  Sum_probs=90.4

Q ss_pred             ChHHHHHHHHhC--CCCEEEEcccCCc----------chHHHHHHHHHH--------cCCceEEEecCCCCHHhHHhhHh
Q 031554            4 NPLDYVEPLGKA--GASGFTFHVEISK----------DNWQELVQRIKS--------KGMRPGVALKPGTSVEEVYPLVE   63 (157)
Q Consensus         4 ~p~~~i~~~~~~--gad~v~vh~e~~~----------~~~~~~i~~ir~--------~g~~~gl~l~~~t~~~~~~~~~~   63 (157)
                      .|++|++.+...  ++|++.+-.-++.          +.+.++++.+++        ...-+.+=+.|+.+.+.+.++.+
T Consensus       162 ~~~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~  241 (367)
T 3zwt_A          162 AAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIAS  241 (367)
T ss_dssp             HHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHH
Confidence            477888765444  4999998753321          222566777664        24555666888877544333222


Q ss_pred             c--CCCCCeEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCC
Q 031554           64 G--ANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGA  124 (157)
Q Consensus        64 ~--~~~~d~vl~m~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Ga  124 (157)
                      .  ..++|.|.+.....               |.+|....+..++.|+++++..+ +++|...|||+ .+++.++..+||
T Consensus       242 ~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GA  321 (367)
T 3zwt_A          242 VVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGA  321 (367)
T ss_dssp             HHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTC
T ss_pred             HHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCC
Confidence            1  15799998763321               12233334556788999998865 79999999998 799999999999


Q ss_pred             CEEEEcccc-cCCCC
Q 031554          125 NCIVAGSSV-FGAPE  138 (157)
Q Consensus       125 d~vV~GSai-~~~~d  138 (157)
                      |.+-+||++ ++.+.
T Consensus       322 d~V~vgra~l~~gP~  336 (367)
T 3zwt_A          322 SLVQLYTALTFWGPP  336 (367)
T ss_dssp             SEEEESHHHHHHCTH
T ss_pred             CEEEECHHHHhcCcH
Confidence            999999997 54343

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=98.36  E-value=4.5e-06  Score=68.11  Aligned_cols=149  Identities=16%  Similarity=0.213  Sum_probs=100.2

Q ss_pred             cChHHHHHHH---H---hCCCCEEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhc
Q 031554            3 TNPLDYVEPL---G---KAGASGFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEG   64 (157)
Q Consensus         3 ~~p~~~i~~~---~---~~gad~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~   64 (157)
                      .+|++|.+.+   .   +.|+|++.+..-.+           .+.+.++++.+|+. .+-+.+=+.|+.+.+.+.+..+.
T Consensus       136 ~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~  215 (354)
T 4ef8_A          136 LSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEI  215 (354)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHH
Confidence            4677776544   2   46899999885421           12337788888886 55556668888877666555531


Q ss_pred             --CCC-CCeEEE-------EeeeC--------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHH
Q 031554           65 --ANP-VEMVLV-------MTVEP--------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA  119 (157)
Q Consensus        65 --~~~-~d~vl~-------m~v~p--------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~  119 (157)
                        ... +|.|.+       |.+++              |.+|....+..++.|+++++..++++|...|||+ .+++.++
T Consensus       216 ~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~  295 (354)
T 4ef8_A          216 LNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLH  295 (354)
T ss_dssp             HHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHH
T ss_pred             HHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHH
Confidence              134 888875       11221              1234444466788899999886689999999998 7999999


Q ss_pred             HHcCCCEEEEcccccCC-CCHH-HHHHHHHHHHH
Q 031554          120 ASAGANCIVAGSSVFGA-PEPA-HVISLMRKSVE  151 (157)
Q Consensus       120 ~~~Gad~vV~GSai~~~-~d~~-~~~~~l~~~~~  151 (157)
                      ..+|||.+-+||+++.. +..- +..+.+++.+.
T Consensus       296 l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~  329 (354)
T 4ef8_A          296 VLAGASMVQVGTALQEEGPSIFERLTSELLGVMA  329 (354)
T ss_dssp             HHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHH
Confidence            99999999999998754 5543 33344444433

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=98.36  E-value=1.9e-06  Score=68.26  Aligned_cols=97  Identities=19%  Similarity=0.264  Sum_probs=64.8

Q ss_pred             cccCCcchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC
Q 031554           23 HVEISKDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY  100 (157)
Q Consensus        23 h~e~~~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~  100 (157)
                      |..+.... .+.++.+|+..  .++.+.+  +|. +.+++.++  .++|+|++-.         |.++.++++.+..  .
T Consensus       178 Hi~~~G~i-~~Av~~ar~~~~~~~IeVEv--~tl-~ea~eAl~--aGaD~I~LDn---------~~~~~l~~av~~~--~  240 (287)
T 3tqv_A          178 HIRSAGGI-AKAVTKAKKLDSNKVVEVEV--TNL-DELNQAIA--AKADIVMLDN---------FSGEDIDIAVSIA--R  240 (287)
T ss_dssp             TC----CH-HHHHHHHHHHCTTSCEEEEE--SSH-HHHHHHHH--TTCSEEEEES---------CCHHHHHHHHHHH--T
T ss_pred             HHHHhCCH-HHHHHHHHhhCCCCcEEEEe--CCH-HHHHHHHH--cCCCEEEEcC---------CCHHHHHHHHHhh--c
Confidence            33333333 78888888864  4555544  555 55555444  6899999843         3444444433222  2


Q ss_pred             CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          101 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       101 ~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      +++.+++-||||++|++++.++|+|++.+|+..-+.
T Consensus       241 ~~v~ieaSGGIt~~~i~~~a~tGVD~IsvGalt~sa  276 (287)
T 3tqv_A          241 GKVALEVSGNIDRNSIVAIAKTGVDFISVGAITKHI  276 (287)
T ss_dssp             TTCEEEEESSCCTTTHHHHHTTTCSEEECSHHHHSB
T ss_pred             CCceEEEECCCCHHHHHHHHHcCCCEEEEChhhcCC
Confidence            579999999999999999999999999999876543

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=98.35  E-value=1.9e-05  Score=61.00  Aligned_cols=134  Identities=13%  Similarity=0.159  Sum_probs=90.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCc-eEEEecC------------------CCCHHhHHhhHhcCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMR-PGVALKP------------------GTSVEEVYPLVEGAN   66 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~-~gl~l~~------------------~t~~~~~~~~~~~~~   66 (157)
                      .+-++.+.++|||.|.+.-.+..+| .-+-+.+++.|.. +.+++..                  -++.+.+.++.+  .
T Consensus        87 ~e~~~~~l~~GadkVii~t~a~~~p-~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~--~  163 (243)
T 4gj1_A           87 KEEVKALLDCGVKRVVIGSMAIKDA-TLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSN--K  163 (243)
T ss_dssp             HHHHHHHHHTTCSEEEECTTTTTCH-HHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHT--T
T ss_pred             HHHHHHHHHcCCCEEEEccccccCC-chHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhh--c
Confidence            3467788999999999999998888 5555666767744 2222321                  112344555553  4


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-CHHHHHH
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-EPAHVIS  144 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~  144 (157)
                      .+.-+++.+++--...+-+.   ++.++++++..+++++.+-||++ .+++..+ +.+++++++||+++... +..++.+
T Consensus       164 g~~eil~t~Id~DGt~~G~d---~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al~~g~i~l~ea~~  239 (243)
T 4gj1_A          164 GLKHILCTDISKDGTMQGVN---VRLYKLIHEIFPNICIQASGGVASLKDLENL-KGICSGVIVGKALLDGVFSVEEGIR  239 (243)
T ss_dssp             TCCEEEEEETTC-----CCC---HHHHHHHHHHCTTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHHHTTSSCHHHHHH
T ss_pred             CCcEEEeeeecccccccCCC---HHHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-HccCchhehHHHHHCCCCCHHHHHH
Confidence            78888887776432333333   44566666777789999999998 7999997 56899999999998543 6677665


Q ss_pred             HH
Q 031554          145 LM  146 (157)
Q Consensus       145 ~l  146 (157)
                      .|
T Consensus       240 ~l  241 (243)
T 4gj1_A          240 CL  241 (243)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4

Probab=98.34  E-value=2.2e-05  Score=59.26  Aligned_cols=117  Identities=13%  Similarity=0.106  Sum_probs=81.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +|....+.+..++.|+|-+|.+-   + .++++.++ .+.++.-++...+... + ...+. . +|++|+-+-. |..|+
T Consensus        63 ~~~~i~~~~~~~~ld~vQLHG~e---~-~~~~~~l~-~~~~vika~~v~~~~~-l-~~~~~-~-~d~~LlD~~~-gGtG~  132 (203)
T 1v5x_A           63 PPEEVLRLMEEARLQVAQLHGEE---P-PEWAEAVG-RFYPVIKAFPLEGPAR-P-EWADY-P-AQALLLDGKR-PGSGE  132 (203)
T ss_dssp             CHHHHHHHHHHTTCSEEEECSCC---C-HHHHHHHT-TTSCEEEEEECSSSCC-G-GGGGS-S-CSEEEEECSS-TTSCC
T ss_pred             CHHHHHHHHHhhCCCEEEECCCC---C-HHHHHHhc-cCCCEEEEEEcCChHh-h-hhhhc-C-CCEEEEcCCC-CCCCC
Confidence            46667777888999999999753   3 35566663 3566665665544322 2 22211 3 8999987533 66888


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .|.-+.+..+  ..   .+.++...||+|++|+.+.+..++.++=+.|.+=.
T Consensus       133 ~fdW~~l~~~--~~---~~~p~~LAGGL~peNV~~ai~~~p~gVDvsSGvE~  179 (203)
T 1v5x_A          133 AYPRAWAKPL--LA---TGRRVILAGGIAPENLEEVLALRPYALDLASGVEE  179 (203)
T ss_dssp             CCCGGGGHHH--HH---TTSCEEECSSCCSTTHHHHHHHCCSEEEESGGGEE
T ss_pred             ccCHHHHHhh--hc---cCCcEEEECCCCHHHHHHHHhcCCCEEEeCCceec
Confidence            8887665442  11   24679999999999998866779999999998864

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=98.34  E-value=5.4e-06  Score=66.67  Aligned_cols=128  Identities=22%  Similarity=0.252  Sum_probs=86.2

Q ss_pred             hHHHHHHHH--hCCCCEEEEcccCCc----------chHHHHHHHHHHc----------CCceEEEecCCCCHHh----H
Q 031554            5 PLDYVEPLG--KAGASGFTFHVEISK----------DNWQELVQRIKSK----------GMRPGVALKPGTSVEE----V   58 (157)
Q Consensus         5 p~~~i~~~~--~~gad~v~vh~e~~~----------~~~~~~i~~ir~~----------g~~~gl~l~~~t~~~~----~   58 (157)
                      +.+|.+.+.  ..|+|++.+|.-++.          ..+.++++++|+.          ++-+.+=++++.+.+.    +
T Consensus       152 ~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a  231 (336)
T 1f76_A          152 KDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVA  231 (336)
T ss_dssp             HHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHH
Confidence            566666553  347999999974432          1114677777765          5667777887765443    3


Q ss_pred             HhhHhcCCCCCeEEEEeeeCC---------------CCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHH
Q 031554           59 YPLVEGANPVEMVLVMTVEPG---------------FGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAAS  121 (157)
Q Consensus        59 ~~~~~~~~~~d~vl~m~v~pG---------------~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~  121 (157)
                      +.+.+  .++|+|.+-....+               ..|....+..++.++++++..+ +++|.+.|||+ .+++.++++
T Consensus       232 ~~l~~--~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~  309 (336)
T 1f76_A          232 DSLVR--HNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIA  309 (336)
T ss_dssp             HHHHH--TTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHH
T ss_pred             HHHHH--cCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH
Confidence            33333  57999987532111               1122222345677888887643 79999999998 799999999


Q ss_pred             cCCCEEEEccccc
Q 031554          122 AGANCIVAGSSVF  134 (157)
Q Consensus       122 ~Gad~vV~GSai~  134 (157)
                      +|||.|-+||++.
T Consensus       310 ~GAd~V~igr~~l  322 (336)
T 1f76_A          310 AGASLVQIYSGFI  322 (336)
T ss_dssp             HTCSEEEESHHHH
T ss_pred             CCCCEEEeeHHHH
Confidence            9999999999865

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=98.33  E-value=1e-05  Score=65.66  Aligned_cols=130  Identities=16%  Similarity=0.123  Sum_probs=86.5

Q ss_pred             HHHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-C--CceEEEecCC------CC
Q 031554            9 VEPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-G--MRPGVALKPG------TS   54 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g--~~~gl~l~~~------t~   54 (157)
                      .+.+.++|+|.|-+|.-.         +      |          ..+.++++++|+. |  ..+|+=++|.      .+
T Consensus       158 A~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~  237 (349)
T 3hgj_A          158 ARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWS  237 (349)
T ss_dssp             HHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCC
T ss_pred             HHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCC
Confidence            345678999999999643         1      1          0126788888886 3  4478888874      23


Q ss_pred             HHh----HHhhHhcCCCCCeEEEEeeeCCCCCcc---c-chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-C
Q 031554           55 VEE----VYPLVEGANPVEMVLVMTVEPGFGGQK---F-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-A  124 (157)
Q Consensus        55 ~~~----~~~~~~~~~~~d~vl~m~v~pG~~gq~---~-~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-a  124 (157)
                      .+.    ++.+.+  .++|+|-+..  .++..+.   . ....++.++++|+.. +++|.+.|||+ ++++.++++.| |
T Consensus       238 ~~~~~~la~~L~~--~Gvd~i~vs~--g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~a~~~l~~G~a  312 (349)
T 3hgj_A          238 LEDTLAFARRLKE--LGVDLLDCSS--GGVVLRVRIPLAPGFQVPFADAVRKRV-GLRTGAVGLITTPEQAETLLQAGSA  312 (349)
T ss_dssp             HHHHHHHHHHHHH--TTCCEEEEEC--CCSCSSSCCCCCTTTTHHHHHHHHHHH-CCEEEECSSCCCHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHH--cCCCEEEEec--CCcCcccccCCCccccHHHHHHHHHHc-CceEEEECCCCCHHHHHHHHHCCCc
Confidence            433    333332  4799987752  1111111   0 112345566666653 68999999995 89999999999 9


Q ss_pred             CEEEEcccccCCCCHHHHH
Q 031554          125 NCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       125 d~vV~GSai~~~~d~~~~~  143 (157)
                      |.|.+|++++..+|+-..+
T Consensus       313 D~V~iGR~~lanPdl~~k~  331 (349)
T 3hgj_A          313 DLVLLGRVLLRDPYFPLRA  331 (349)
T ss_dssp             SEEEESTHHHHCTTHHHHH
T ss_pred             eEEEecHHHHhCchHHHHH
Confidence            9999999999878865443

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.33  E-value=1.3e-05  Score=68.05  Aligned_cols=128  Identities=19%  Similarity=0.230  Sum_probs=83.0

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      +....++.+.++|+|.|.++...... .+.+.++++|+.  +..+++ -+. ...+.++.+.+  .++|.|.+- .-||.
T Consensus       231 d~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v-~t~e~a~~l~~--aGaD~I~Vg-~g~Gs  305 (496)
T 4fxs_A          231 GNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNV-ATAEGARALIE--AGVSAVKVG-IGPGS  305 (496)
T ss_dssp             CCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEE-CSHHHHHHHHH--HTCSEEEEC-SSCCT
T ss_pred             chHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEE-ccc-CcHHHHHHHHH--hCCCEEEEC-CCCCc
Confidence            34677888999999999998654322 225788888886  444433 222 34455666665  589999863 23442


Q ss_pred             CCcc-----cchhHHHHHHHHHhhC--CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           81 GGQK-----FMPEMMDKVRSLRNRY--PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        81 ~gq~-----~~~~~~~ki~~l~~~~--~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ....     +....+..+.++.+..  .+++|.+||||+ .+++..+.++|||.+.+||++...
T Consensus       306 ~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~t  369 (496)
T 4fxs_A          306 ICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGT  369 (496)
T ss_dssp             TBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             CcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhcC
Confidence            2100     0011233334443321  368999999997 899999999999999999998753

>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A

Probab=98.33  E-value=1.1e-05  Score=61.01  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=82.0

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC--CCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP--GFG   81 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p--G~~   81 (157)
                      +|+...+.+..++.|+|-+|.+.   + .++++.+|+ +.++.-++...+.. .+..+.+. . +|++|+-+-.|  |..
T Consensus        64 ~~~~i~~~~~~~~ld~vQLHG~e---~-~~~~~~l~~-~~~vika~~v~~~~-~l~~~~~~-~-~d~~LlD~~~~~~GGt  135 (205)
T 1nsj_A           64 EPEKILDVASYVQLNAVQLHGEE---P-IELCRKIAE-RILVIKAVGVSNER-DMERALNY-R-EFPILLDTKTPEYGGS  135 (205)
T ss_dssp             CHHHHHHHHHHHTCSEEEECSCC---C-HHHHHHHHT-TSEEEEEEEESSHH-HHHHHGGG-T-TSCEEEEESCSSSSSC
T ss_pred             CHHHHHHHHHhhCCCEEEECCCC---C-HHHHHHHhc-CCCEEEEEEcCCHH-HHHHHHHc-C-CCEEEECCCCCCCCCC
Confidence            46666777788999999999752   3 466666653 45555566544432 23333322 3 89999987654  778


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccC
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFG  135 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~  135 (157)
                      |+.|.-+.+..+   +  ....++...||+|++|+.+.++ .++.++=+.|.+=.
T Consensus       136 G~~fdw~~l~~~---~--~~~~p~~LAGGL~peNV~~ai~~~~p~gVDvsSGvE~  185 (205)
T 1nsj_A          136 GKTFDWSLILPY---R--DRFRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVEA  185 (205)
T ss_dssp             CSCCCGGGTGGG---G--GGSSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEE
T ss_pred             CCccCHHHHHhh---h--cCCCcEEEECCCCHHHHHHHHHhcCCCEEEECCceec
Confidence            898876554322   1  1256899999999999987654 69999999998864

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=98.32  E-value=1.2e-05  Score=66.02  Aligned_cols=133  Identities=14%  Similarity=0.103  Sum_probs=86.5

Q ss_pred             HHHHHH---HHhCCCCEEEEcccC---------C------cc----------hHHHHHHHHHHc-CC-ceEEEecCCC--
Q 031554            6 LDYVEP---LGKAGASGFTFHVEI---------S------KD----------NWQELVQRIKSK-GM-RPGVALKPGT--   53 (157)
Q Consensus         6 ~~~i~~---~~~~gad~v~vh~e~---------~------~~----------~~~~~i~~ir~~-g~-~~gl~l~~~t--   53 (157)
                      ..|.+.   +.++|+|.|-+|.-.         +      |.          .+.++++++|+. |. .+++-+++..  
T Consensus       166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~  245 (377)
T 2r14_A          166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL  245 (377)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence            455543   378899999999642         0      10          126778888885 43 7888888752  


Q ss_pred             -------CHHhH---HhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC
Q 031554           54 -------SVEEV---YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG  123 (157)
Q Consensus        54 -------~~~~~---~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G  123 (157)
                             +.+..   .+.++- .++|+|-+..   |...+......++.++++|+.. +.+|.+-|||+++++.++++.|
T Consensus       246 ~~~~~~~~~~~~~~la~~le~-~Gvd~i~v~~---~~~~~~~~~~~~~~~~~ik~~~-~iPvi~~Ggi~~~~a~~~l~~g  320 (377)
T 2r14_A          246 FGLTDDEPEAMAFYLAGELDR-RGLAYLHFNE---PDWIGGDITYPEGFREQMRQRF-KGGLIYCGNYDAGRAQARLDDN  320 (377)
T ss_dssp             TTCCCSCHHHHHHHHHHHHHH-TTCSEEEEEC---CC------CCCTTHHHHHHHHC-CSEEEEESSCCHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHH-cCCCEEEEeC---CcccCCCCcchHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHCC
Confidence                   22332   222222 5799997753   2111110001234566677764 6789999999999999999998


Q ss_pred             -CCEEEEcccccCCCCHHHHH
Q 031554          124 -ANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       124 -ad~vV~GSai~~~~d~~~~~  143 (157)
                       ||.|.+|++++..+++-..+
T Consensus       321 ~aD~V~igR~~l~~P~l~~k~  341 (377)
T 2r14_A          321 TADAVAFGRPFIANPDLPERF  341 (377)
T ss_dssp             SCSEEEESHHHHHCTTHHHHH
T ss_pred             CceEEeecHHHHhCchHHHHH
Confidence             99999999999878865544

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=98.31  E-value=7.2e-07  Score=71.07  Aligned_cols=92  Identities=17%  Similarity=0.269  Sum_probs=51.2

Q ss_pred             HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHH-HHhh---CCCCc
Q 031554           32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS-LRNR---YPSLD  104 (157)
Q Consensus        32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~-l~~~---~~~~~  104 (157)
                      .+.++.+|+. +  .++++.+  +|..+ +.+.++  .++|+|.+-+         |.++.++++.+ ++..   +++++
T Consensus       186 ~~ai~~~r~~~~~~~~i~vev--~tlee-~~~A~~--aGaD~I~ld~---------~~~~~l~~~v~~l~~~~~g~~~v~  251 (294)
T 3c2e_A          186 TNAVKNARAVCGFAVKIEVEC--LSEDE-ATEAIE--AGADVIMLDN---------FKGDGLKMCAQSLKNKWNGKKHFL  251 (294)
T ss_dssp             HHHHHHHHHHHCTTSCEEEEC--SSSHH-HHHHHH--HTCSEEECCC------------------------------CCE
T ss_pred             HHHHHHHHHhcCcCCeEEEec--CCHHH-HHHHHH--cCCCEEEECC---------CCHHHHHHHHHHhcccccCCCCeE
Confidence            5667777765 3  4566655  56644 443333  5799998643         22333333222 2222   24589


Q ss_pred             EEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          105 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       105 I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      |.+-||||++|++++.++|||.+.+||++++++
T Consensus       252 I~ASGGIt~~ni~~~~~~GvD~i~vGs~i~~a~  284 (294)
T 3c2e_A          252 LECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTP  284 (294)
T ss_dssp             EEEECCCCC------CCCSCSEEECGGGTSSCC
T ss_pred             EEEECCCCHHHHHHHHHcCCCEEEEechhcCCC
Confidence            999999999999999999999999999988654

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=98.27  E-value=3.1e-05  Score=62.65  Aligned_cols=129  Identities=12%  Similarity=0.107  Sum_probs=87.3

Q ss_pred             HHHHhCCCCEEEEcccC---------C------cc----------hHHHHHHHHHHc-CCceEEEecCCC------CHH-
Q 031554           10 EPLGKAGASGFTFHVEI---------S------KD----------NWQELVQRIKSK-GMRPGVALKPGT------SVE-   56 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---------~------~~----------~~~~~i~~ir~~-g~~~gl~l~~~t------~~~-   56 (157)
                      +.+.++|+|.|-+|.-.         +      |.          .+.++++++|+. +..+++=++|.+      +.+ 
T Consensus       151 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~  230 (340)
T 3gr7_A          151 RRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKD  230 (340)
T ss_dssp             HHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGG
T ss_pred             HHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHH
Confidence            44577899999999652         1      10          125788888876 777888888752      232 


Q ss_pred             ---hHHhhHhcCCCCCeEEEEeeeCCCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554           57 ---EVYPLVEGANPVEMVLVMTVEPGFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV  128 (157)
Q Consensus        57 ---~~~~~~~~~~~~d~vl~m~v~pG~~gq~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV  128 (157)
                         .++.+.+  .++|+|-+..  .++..+.   .....++.++++|+.. +++|.+-|||+ ++.+.++++.| ||.|.
T Consensus       231 ~~~la~~L~~--~Gvd~i~vs~--g~~~~~~~~~~~~~~~~~~~~ik~~~-~iPVi~~GgI~s~e~a~~~L~~G~aD~V~  305 (340)
T 3gr7_A          231 YVPYAKRMKE--QGVDLVDVSS--GAIVPARMNVYPGYQVPFAELIRREA-DIPTGAVGLITSGWQAEEILQNGRADLVF  305 (340)
T ss_dssp             HHHHHHHHHH--TTCCEEEEEC--CCSSCCCCCCCTTTTHHHHHHHHHHT-TCCEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred             HHHHHHHHHH--cCCCEEEEec--CCccCCCCCCCccccHHHHHHHHHHc-CCcEEeeCCCCCHHHHHHHHHCCCeeEEE
Confidence               2333332  4799987752  1111111   1112455677777765 78999999995 89999999999 99999


Q ss_pred             EcccccCCCCHHHHH
Q 031554          129 AGSSVFGAPEPAHVI  143 (157)
Q Consensus       129 ~GSai~~~~d~~~~~  143 (157)
                      +|++++..||+-..+
T Consensus       306 iGR~~lanPdl~~ki  320 (340)
T 3gr7_A          306 LGRELLRNPYWPYAA  320 (340)
T ss_dssp             ECHHHHHCTTHHHHH
T ss_pred             ecHHHHhCchHHHHH
Confidence            999998878865443

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.25  E-value=2.3e-05  Score=71.58  Aligned_cols=146  Identities=15%  Similarity=0.222  Sum_probs=96.5

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHc-CCceEEEecCCCC--HHhHHhhH
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEISK---------------DNWQELVQRIKSK-GMRPGVALKPGTS--VEEVYPLV   62 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~-g~~~gl~l~~~t~--~~~~~~~~   62 (157)
                      ++..|.+   .+.++|+|.|.+|.-.+.               ..+.++++++|+. ++.+.+=+.|+..  .+.++.+.
T Consensus       646 ~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~~~a~~~~  725 (1025)
T 1gte_A          646 NKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAK  725 (1025)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeCCChHHHHHHHHHHH
Confidence            4555554   445779999999965321               1236788888886 6666666666533  33344444


Q ss_pred             hcCCCCCeEEEEe-------ee-----------------CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHH
Q 031554           63 EGANPVEMVLVMT-------VE-----------------PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIA  117 (157)
Q Consensus        63 ~~~~~~d~vl~m~-------v~-----------------pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~  117 (157)
                      +  .++|.|.+..       +.                 .|..|....+..++-++++++..++++|...|||+ .+++.
T Consensus       726 ~--~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~  803 (1025)
T 1gte_A          726 E--GGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGL  803 (1025)
T ss_dssp             H--HTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHH
T ss_pred             H--cCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHH
Confidence            3  4799998821       10                 11223333334467788888877789999999996 79999


Q ss_pred             HHHHcCCCEEEEcccccC-CCCH-HHHHHHHHHHHH
Q 031554          118 EAASAGANCIVAGSSVFG-APEP-AHVISLMRKSVE  151 (157)
Q Consensus       118 ~~~~~Gad~vV~GSai~~-~~d~-~~~~~~l~~~~~  151 (157)
                      +++.+|||.+.+|++++. .++. ......|+..+.
T Consensus       804 ~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~l~  839 (1025)
T 1gte_A          804 QFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLY  839 (1025)
T ss_dssp             HHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCEEEEeeccccCCccHHHHHHHHHHHHHH
Confidence            999999999999999875 4433 444455655443

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=98.24  E-value=4.9e-06  Score=66.27  Aligned_cols=98  Identities=17%  Similarity=0.218  Sum_probs=64.5

Q ss_pred             cccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC
Q 031554           23 HVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY  100 (157)
Q Consensus        23 h~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~  100 (157)
                      |..+.... .+.++++|++  +.++.+.+  +|. +.+++.++  .++|.|++-.         |.++.+++.-+.  ..
T Consensus       189 Hi~~~G~i-~~Av~~~r~~~p~~~ieVEv--dtl-de~~eAl~--aGaD~I~LDn---------~~~~~l~~av~~--i~  251 (298)
T 3gnn_A          189 HIAAAGGV-GEALDAAFALNAEVPVQIEV--ETL-DQLRTALA--HGARSVLLDN---------FTLDMMRDAVRV--TE  251 (298)
T ss_dssp             ------CH-HHHHHHHHHHC--CCCEEEE--SSH-HHHHHHHH--TTCEEEEEES---------CCHHHHHHHHHH--HT
T ss_pred             HHHHcCCH-HHHHHHHHHhCCCCCEEEEe--CCH-HHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHH--hC
Confidence            33333333 6788888876  34555555  444 44555554  6899998853         334444443222  24


Q ss_pred             CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          101 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       101 ~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      +++.|++-||||++|++++.++|+|.|.+|+...+++
T Consensus       252 ~~v~ieaSGGI~~~~i~~~a~tGVD~isvG~lt~sa~  288 (298)
T 3gnn_A          252 GRAVLEVSGGVNFDTVRAIAETGVDRISIGALTKDVR  288 (298)
T ss_dssp             TSEEEEEESSCSTTTHHHHHHTTCSEEECGGGGTSCC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHcCCCEEEECCeecCCC
Confidence            6799999999999999999999999999999776543

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=98.23  E-value=8.2e-06  Score=64.96  Aligned_cols=89  Identities=17%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             HHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                      .+.++.+|++  ..++-+.+  +| ++.+++.++  .++|.|++-.         |.++.++++-+..  ..++.+++-|
T Consensus       195 ~~Av~~ar~~~p~~kIeVEv--~t-l~e~~eAl~--aGaDiImLDn---------~s~~~l~~av~~~--~~~v~leaSG  258 (300)
T 3l0g_A          195 TLAIQRLRKNLKNEYIAIEC--DN-ISQVEESLS--NNVDMILLDN---------MSISEIKKAVDIV--NGKSVLEVSG  258 (300)
T ss_dssp             HHHHHHHHHHSSSCCEEEEE--SS-HHHHHHHHH--TTCSEEEEES---------CCHHHHHHHHHHH--TTSSEEEEES
T ss_pred             HHHHHHHHHhCCCCCEEEEE--CC-HHHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHhh--cCceEEEEEC
Confidence            6778888876  34444444  55 455555554  6899998842         4444444432222  2478999999


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      |||++|++++.+.|+|.|.+|+...++
T Consensus       259 GIt~~~i~~~A~tGVD~IsvGalthsa  285 (300)
T 3l0g_A          259 CVNIRNVRNIALTGVDYISIGCITNSF  285 (300)
T ss_dssp             SCCTTTHHHHHTTTCSEEECGGGTSSC
T ss_pred             CCCHHHHHHHHHcCCCEEEeCccccCC
Confidence            999999999999999999999876544

>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}

Probab=98.23  E-value=1.3e-05  Score=62.62  Aligned_cols=64  Identities=19%  Similarity=0.297  Sum_probs=48.7

Q ss_pred             HHHHHHhhCCCCcEEEEcCCCH--hhHHHHHHcCCC------EEEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 031554           92 KVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGAN------CIVAGSSVFGAPEPAHVISLMRKSVEDAQKN  156 (157)
Q Consensus        92 ki~~l~~~~~~~~I~vdGGI~~--~~i~~~~~~Gad------~vV~GSai~~~~d~~~~~~~l~~~~~~~~~~  156 (157)
                      .++.+|+..++..+.+ =||.+  .+..+.+++|+|      ++|+|+.|++++||.++++++++.++..+++
T Consensus       183 e~~~ir~~~~~~~~l~-PGIg~qg~tp~~a~~~G~d~~~~~~livvGR~I~~A~dp~~aa~~i~~~i~~~~~~  254 (255)
T 3qw3_A          183 ALARVRARAPTLWFLV-PGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAIRFA  254 (255)
T ss_dssp             HHHHHHHHCSSCCEEE-CCC-----CHHHHHHHHCCTTSCCEEEEESHHHHTSSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCeEEE-CCcCCCCCCHHHHHHcCCCcccCeeEEEeChhhcCCCCHHHHHHHHHHHHHHHHhc
Confidence            3556666665544544 45554  588888889999      4999999999999999999999999988764

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=98.22  E-value=5.6e-05  Score=61.72  Aligned_cols=131  Identities=22%  Similarity=0.316  Sum_probs=87.2

Q ss_pred             HHHHHH---HHhCCCCEEEEcccC---------------Cc----------chHHHHHHHHHHc-CC-ceEEEecCCC--
Q 031554            6 LDYVEP---LGKAGASGFTFHVEI---------------SK----------DNWQELVQRIKSK-GM-RPGVALKPGT--   53 (157)
Q Consensus         6 ~~~i~~---~~~~gad~v~vh~e~---------------~~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t--   53 (157)
                      ..|.+.   +.++|+|.|-+|.-.               .+          ..+.++++++|+. |. .+++=++|..  
T Consensus       161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~  240 (365)
T 2gou_A          161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTL  240 (365)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCT
T ss_pred             HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEcccccc
Confidence            455544   478999999999632               01          0125678888875 43 6888788742  


Q ss_pred             -------CHHhH---HhhHhcCCCCCeEEEEeeeCCCCC-cccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc
Q 031554           54 -------SVEEV---YPLVEGANPVEMVLVMTVEPGFGG-QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA  122 (157)
Q Consensus        54 -------~~~~~---~~~~~~~~~~d~vl~m~v~pG~~g-q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~  122 (157)
                             +.+..   .+.++- .++|+|-+....  +.+ ..+   .++.++++|+.. +++|.+-|||+++++.++++.
T Consensus       241 ~~~~~~~~~~~~~~~a~~l~~-~G~d~i~v~~~~--~~~~~~~---~~~~~~~i~~~~-~iPvi~~Ggi~~~~a~~~l~~  313 (365)
T 2gou_A          241 NGTVDADPILTYTAAAALLNK-HRIVYLHIAEVD--WDDAPDT---PVSFKRALREAY-QGVLIYAGRYNAEKAEQAIND  313 (365)
T ss_dssp             TSCCCSSHHHHHHHHHHHHHH-TTCSEEEEECCB--TTBCCCC---CHHHHHHHHHHC-CSEEEEESSCCHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCC--cCCCCCc---cHHHHHHHHHHC-CCcEEEeCCCCHHHHHHHHHC
Confidence                   33332   222222 579999775321  111 111   134566777764 679999999999999999999


Q ss_pred             C-CCEEEEcccccCCCCHHHHH
Q 031554          123 G-ANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       123 G-ad~vV~GSai~~~~d~~~~~  143 (157)
                      | ||.|.+|++++..+++-..+
T Consensus       314 g~aD~V~igR~~i~~P~l~~~~  335 (365)
T 2gou_A          314 GLADMIGFGRPFIANPDLPERL  335 (365)
T ss_dssp             TSCSEEECCHHHHHCTTHHHHH
T ss_pred             CCcceehhcHHHHhCchHHHHH
Confidence            8 99999999988778765544

>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A

Probab=98.21  E-value=4.2e-07  Score=74.04  Aligned_cols=63  Identities=17%  Similarity=0.240  Sum_probs=44.1

Q ss_pred             HHHHHhhCCCCcE-----EEEcCCCHhhHHHH--HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554           93 VRSLRNRYPSLDI-----EVDGGLGPSTIAEA--ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        93 i~~l~~~~~~~~I-----~vdGGI~~~~i~~~--~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~  155 (157)
                      ++.+|+..+++.+     .+.||.-.+.+...  .+.|+|++|+|++|++++||.++++++++.+..+++
T Consensus       270 ~~~iR~~~~~~~iLtPGIGaqgGdq~rv~tp~~a~~~gadiIvVGR~I~~A~dp~~Aa~~i~~ei~~~l~  339 (352)
T 2fds_A          270 MKIIRNKFPDSYILSPGIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQIIQIFK  339 (352)
T ss_dssp             HHHHHHHSTTCCEEECCC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEcCccccccCcHHHhhCHHhHhhcCceEEEECHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            3445555456655     77888876655544  578999999999999999999999999998876554

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=98.21  E-value=3.1e-05  Score=62.23  Aligned_cols=127  Identities=20%  Similarity=0.220  Sum_probs=84.9

Q ss_pred             hHHHHHHHHhCCCCEEEEcccC--------Ccc--hHHHHHHHHHHcCCceEEE-ecCCCCHHhHHhhHhcCCCCCeEEE
Q 031554            5 PLDYVEPLGKAGASGFTFHVEI--------SKD--NWQELVQRIKSKGMRPGVA-LKPGTSVEEVYPLVEGANPVEMVLV   73 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~--------~~~--~~~~~i~~ir~~g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl~   73 (157)
                      |....+.+...++|.+.+|...        ...  .+.+.++++|+.++.+.+- +.+....+..+.+.+  .++|.|.+
T Consensus       134 ~~~~~~a~~~~~~~a~~i~~n~~~~~~~~~~~~~~~~~~~i~~vr~~~~Pv~vK~v~~g~~~e~a~~~~~--~G~d~I~v  211 (332)
T 1vcf_A          134 RDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRD--LPLAAVDV  211 (332)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTT--SCCSEEEC
T ss_pred             hHHHHHHHhhcCCCceeeccchHHHHhcCCCccHHHHHHHHHHHHcCCCCEEEEecCCCCCHHHHHHHHH--cCCCEEEe
Confidence            5555555555588887777532        111  1257788888855555654 555567777766654  58999977


Q ss_pred             EeeeCCCC-------Cc----------ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554           74 MTVEPGFG-------GQ----------KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        74 m~v~pG~~-------gq----------~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      -+ +.|+.       -|          .+.+..++-+.++++..++++|.++|||+ .+.+.+...+|||.+-+|++++
T Consensus       212 s~-~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l  289 (332)
T 1vcf_A          212 AG-AGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLL  289 (332)
T ss_dssp             CC-BTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred             CC-CCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHH
Confidence            31 22211       11          12234566777887776579999999998 7999998899999999999865

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=98.21  E-value=4.5e-05  Score=62.27  Aligned_cols=132  Identities=14%  Similarity=0.208  Sum_probs=87.0

Q ss_pred             HHHHHH---HHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-CC-ceEEEecCCC--
Q 031554            6 LDYVEP---LGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-GM-RPGVALKPGT--   53 (157)
Q Consensus         6 ~~~i~~---~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t--   53 (157)
                      ..|.+.   +.++|+|.|-+|.-.         +      |          ..+.++++++|+. |- .+++=|++..  
T Consensus       161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~  240 (364)
T 1vyr_A          161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF  240 (364)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcccccc
Confidence            355544   478999999999642         0      1          0126778888885 32 6788777752  


Q ss_pred             --------CHHh---HHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc
Q 031554           54 --------SVEE---VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA  122 (157)
Q Consensus        54 --------~~~~---~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~  122 (157)
                              +.+.   +.+.++- .++|+|-+..-  ++.+..  +..++.++++|+.. +++|.+-|||+.+++.++++.
T Consensus       241 ~~~~~~~~~~~~~~~~a~~l~~-~G~d~i~v~~~--~~~~~~--~~~~~~~~~v~~~~-~iPvi~~Ggit~~~a~~~l~~  314 (364)
T 1vyr_A          241 QNVDNGPNEEADALYLIEELAK-RGIAYLHMSET--DLAGGK--PYSEAFRQKVRERF-HGVIIGAGAYTAEKAEDLIGK  314 (364)
T ss_dssp             TTBCCCTTHHHHHHHHHHHHHH-TTCSEEEEECC--BTTBCC--CCCHHHHHHHHHHC-CSEEEEESSCCHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHH-hCCCEEEEecC--cccCCC--cccHHHHHHHHHHC-CCCEEEECCcCHHHHHHHHHC
Confidence                    2222   1222222 57999977531  111111  11244567777764 689999999999999999999


Q ss_pred             C-CCEEEEcccccCCCCHHHHH
Q 031554          123 G-ANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       123 G-ad~vV~GSai~~~~d~~~~~  143 (157)
                      | ||.|.+|++++..+++-..+
T Consensus       315 g~aD~V~~gR~~l~~P~~~~~~  336 (364)
T 1vyr_A          315 GLIDAVAFGRDYIANPDLVARL  336 (364)
T ss_dssp             TSCSEEEESHHHHHCTTHHHHH
T ss_pred             CCccEEEECHHHHhChhHHHHH
Confidence            8 99999999999878875544

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=98.20  E-value=1.8e-05  Score=62.39  Aligned_cols=138  Identities=13%  Similarity=0.165  Sum_probs=95.8

Q ss_pred             HHHHHHHHhCCCCEEEEcc--------------cCCcc--hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHV--------------EISKD--NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVE   69 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~--------------e~~~~--~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d   69 (157)
                      ..|++.+.++|+..|.=|.              |..-.  ...+.++.+|+.|+..-+-.   +..+..+...+  -++|
T Consensus       111 g~~Le~lk~~Gf~Gv~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~v---~~~eeA~amA~--agpD  185 (286)
T 2p10_A          111 STFLRELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYV---FSPEDAVAMAK--AGAD  185 (286)
T ss_dssp             HHHHHHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEE---CSHHHHHHHHH--HTCS
T ss_pred             HHHHHHHHHhCCceEEECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEec---CCHHHHHHHHH--cCCC
Confidence            5678999999999997777              54332  12577888888888644433   34455555554  4899


Q ss_pred             eEEEEeeeCCCC-------Ccc-cchhHHHHHHHH----HhhCCCCcEEEEc-CCC-HhhHHHHHHc--CCCEEEEcccc
Q 031554           70 MVLVMTVEPGFG-------GQK-FMPEMMDKVRSL----RNRYPSLDIEVDG-GLG-PSTIAEAASA--GANCIVAGSSV  133 (157)
Q Consensus        70 ~vl~m~v~pG~~-------gq~-~~~~~~~ki~~l----~~~~~~~~I~vdG-GI~-~~~i~~~~~~--Gad~vV~GSai  133 (157)
                      +|.+   |||..       +.. -..+..+++.++    ++..|++.+...| ||+ ++++..+.+.  |+|+|..+|++
T Consensus       186 iI~~---h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gASsi  262 (286)
T 2p10_A          186 ILVC---HMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGASSM  262 (286)
T ss_dssp             EEEE---ECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESHHH
T ss_pred             EEEE---CCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEeehhh
Confidence            9976   57621       111 122223333333    4457888766666 887 7999999998  99999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHH
Q 031554          134 FGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       134 ~~~~d~~~~~~~l~~~~~~  152 (157)
                      -+.+ +++++.++-+.++.
T Consensus       263 er~p-~e~ai~~~~~~fk~  280 (286)
T 2p10_A          263 ERLP-AEEAIRSQTLAFKA  280 (286)
T ss_dssp             HHHH-HHHHHHHHHHHHHT
T ss_pred             hcCC-HHHHHHHHHHHHHh
Confidence            9988 99988888777764

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=98.19  E-value=8.2e-06  Score=65.57  Aligned_cols=89  Identities=17%  Similarity=0.230  Sum_probs=63.0

Q ss_pred             HHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                      .+.++.+|+..  .++.+.+  +|. +.+++.++  .++|+|++-.         |.++.++++.+.  ..+++.|++-|
T Consensus       219 ~~Av~~ar~~~p~~kIeVEV--dtl-dea~eAl~--aGaD~I~LDn---------~~~~~l~~av~~--l~~~v~ieaSG  282 (320)
T 3paj_A          219 RQAISTAKQLNPGKPVEVET--ETL-AELEEAIS--AGADIIMLDN---------FSLEMMREAVKI--NAGRAALENSG  282 (320)
T ss_dssp             HHHHHHHHHHSTTSCEEEEE--SSH-HHHHHHHH--TTCSEEEEES---------CCHHHHHHHHHH--HTTSSEEEEES
T ss_pred             HHHHHHHHHhCCCCeEEEEE--CCH-HHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHH--hCCCCeEEEEC
Confidence            67777888753  4455555  454 55555554  6899998853         344455443332  22579999999


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      |||++|++++.++|+|++.+|+....+
T Consensus       283 GIt~~~I~~~a~tGVD~isvGalt~sa  309 (320)
T 3paj_A          283 NITLDNLKECAETGVDYISVGALTKHL  309 (320)
T ss_dssp             SCCHHHHHHHHTTTCSEEECTHHHHSB
T ss_pred             CCCHHHHHHHHHcCCCEEEECceecCC
Confidence            999999999999999999999966543

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=98.19  E-value=1.9e-05  Score=64.58  Aligned_cols=126  Identities=13%  Similarity=0.189  Sum_probs=83.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC---------cc--hHHHHHHHHHHc-CCceEEE-ecCCCCHHhHHhhHhcCCCCCeEE
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS---------KD--NWQELVQRIKSK-GMRPGVA-LKPGTSVEEVYPLVEGANPVEMVL   72 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~---------~~--~~~~~i~~ir~~-g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl   72 (157)
                      +.+.+..-+.|||.+.+|....         .+  .+.+.++++|+. +..+.+- +....+.+.++.+.+  .++|.|.
T Consensus       158 e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~--aGad~I~  235 (365)
T 3sr7_A          158 QAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAID--LGVKTVD  235 (365)
T ss_dssp             HHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHH--HTCCEEE
T ss_pred             HHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHH--cCCCEEE
Confidence            4455666688999999996531         11  234778888886 5555554 333356677777766  4899998


Q ss_pred             EEeeeCCCCC-c-------------ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554           73 VMTVEPGFGG-Q-------------KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        73 ~m~v~pG~~g-q-------------~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      +-+- .|..- |             .+......-+.+++....+++|.+||||+ ..++.+.+.+|||.+-+|++++
T Consensus       236 V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l  311 (365)
T 3sr7_A          236 ISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTML  311 (365)
T ss_dssp             CCCB-C--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             EeCC-CCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            7422 22210 0             11122344555666665679999999998 7889888899999999999865

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=98.18  E-value=0.00016  Score=58.67  Aligned_cols=123  Identities=19%  Similarity=0.230  Sum_probs=79.5

Q ss_pred             HHHHHHHhC--CCCEEEEcccCCc-chHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            7 DYVEPLGKA--GASGFTFHVEISK-DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         7 ~~i~~~~~~--gad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      ..++.+.+.  |+|.+.+|....+ ..+.+.++++|+.  +..+++- + -+..+.++...+  .++|.|.+ +..||..
T Consensus       121 ~~~~~l~~~~~g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g-~-v~t~e~A~~a~~--aGaD~I~v-~~g~G~~  195 (351)
T 2c6q_A          121 EQLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAG-N-VVTGEMVEELIL--SGADIIKV-GIGPGSV  195 (351)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEE-E-ECSHHHHHHHHH--TTCSEEEE-CSSCSTT
T ss_pred             HHHHHHHhccCCCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEE-e-CCCHHHHHHHHH--hCCCEEEE-CCCCCcC
Confidence            345566666  9999999853211 1125788888887  5555542 1 234566666655  58999976 4555531


Q ss_pred             C--c------ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           82 G--Q------KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        82 g--q------~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .  .      .-....+..+.+..+. .+++|.+||||+ ...+.....+|||.+.+|+.+..
T Consensus       196 ~~~r~~~g~~~p~~~~l~~v~~~~~~-~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~  257 (351)
T 2c6q_A          196 CTTRKKTGVGYPQLSAVMECADAAHG-LKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAG  257 (351)
T ss_dssp             BCHHHHHCBCCCHHHHHHHHHHHHHH-TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             cCccccCCCCccHHHHHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhc
Confidence            1  0      0011233344443333 369999999999 79999999999999999998863

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=98.17  E-value=8.9e-05  Score=57.75  Aligned_cols=115  Identities=16%  Similarity=0.145  Sum_probs=79.6

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHH--cCCceEEEec-----CCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKS--KGMRPGVALK-----PGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~--~g~~~gl~l~-----~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      .-++.+.+.|+|.|.|..-..+..+ .+..+.+-+  .|+.  +.++     ..+|.+.++.+.++  ++|.||-    -
T Consensus        77 ~Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~--vTFHRAfD~~~d~~~ale~L~~l--G~~rILT----S  148 (256)
T 1twd_A           77 EDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLA--VTFHRAFDMCANPLYTLNNLAEL--GIARVLT----S  148 (256)
T ss_dssp             HHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTSE--EEECGGGGGCSCHHHHHHHHHHH--TCCEEEE----C
T ss_pred             HHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhCCCc--EEEECchhccCCHHHHHHHHHHc--CCCEEEC----C
Confidence            3567889999999999976665422 223333222  2443  3432     35677778888765  7899984    2


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      |  ++.-..+.++.|+++.+....+.|.+.||||++|++.+.+.|++-|=.++
T Consensus       149 G--~~~~a~~g~~~L~~Lv~~a~~i~Im~GgGv~~~Ni~~l~~tGv~e~H~Sa  199 (256)
T 1twd_A          149 G--QKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSA  199 (256)
T ss_dssp             T--TSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHHHTCSEEEECC
T ss_pred             C--CCCCHHHHHHHHHHHHHhhCCcEEEecCCcCHHHHHHHHHcCCCeEeECC
Confidence            2  33335567778888876533788999999999999999999999988553

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=98.16  E-value=4.3e-05  Score=56.90  Aligned_cols=133  Identities=21%  Similarity=0.238  Sum_probs=81.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH-cCCc-eEEEecC-------------------CCCHHhHHhhHhc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKS-KGMR-PGVALKP-------------------GTSVEEVYPLVEG   64 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~-~g~~-~gl~l~~-------------------~t~~~~~~~~~~~   64 (157)
                      ......+.+.|++.+..-....+.  .+.++.+++ .+.+ ..+.+..                   .++.+.++.+.. 
T Consensus        65 ~~~~~~~~~~Ga~~~l~kp~~~~~--~~l~~~i~~~~~~~~~~~~~d~~~~~~~~~v~~~~g~~~~~~~~~~~i~~~~~-  141 (237)
T 3cwo_X           65 QAMVIEAIKAGAKDFIVNTAAVEN--PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEK-  141 (237)
T ss_dssp             HHHHHHHHHTTCCEEEESHHHHHC--THHHHHHHHHHTGGGEEEEEEEEESSSCEEEEETTTTEEEEEEHHHHHHHHHH-
T ss_pred             HHHHHHHHHCCHHheEeCCcccCh--HHHHHHHHHHhCCCceEEEeeecccCCcEEEEEeCCccccccCHHHHHHHHhh-
Confidence            456778889999998876411111  123333322 2322 2222221                   123344454442 


Q ss_pred             CCCCCeEEEEee-eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc-CCCCHHH
Q 031554           65 ANPVEMVLVMTV-EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF-GAPEPAH  141 (157)
Q Consensus        65 ~~~~d~vl~m~v-~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~-~~~d~~~  141 (157)
                       .....++++++ ..|.+. .+   ..+.|+++++.. +.++.+-||++ ++++.++.++|+|.+++||+++ +..++.+
T Consensus       142 -~~~~~vli~~~~~~g~~~-g~---~~~~i~~~~~~~-~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~  215 (237)
T 3cwo_X          142 -RGAGEILLTSIDRDGTKS-GY---DTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRE  215 (237)
T ss_dssp             -HTCSEEEEEETTTTTCCS-CC---CHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHH
T ss_pred             -cCCCeEEEEecCCCCccc-cc---cHHHHHHHHHhc-CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHH
Confidence             34666777765 334322 12   266778777764 78888999998 7999999999999999999985 4457777


Q ss_pred             HHHHHH
Q 031554          142 VISLMR  147 (157)
Q Consensus       142 ~~~~l~  147 (157)
                      ..+.++
T Consensus       216 ~~~~l~  221 (237)
T 3cwo_X          216 LKEYLK  221 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=98.16  E-value=4.5e-05  Score=61.53  Aligned_cols=124  Identities=21%  Similarity=0.228  Sum_probs=82.8

Q ss_pred             HHHHHHHHhCC--CCEEEEcccC-CcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            6 LDYVEPLGKAG--ASGFTFHVEI-SKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         6 ~~~i~~~~~~g--ad~v~vh~e~-~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      .+.++.+.+.|  ++++.++.-. ......+.++++|+.  +..+..-  .-+..+.++.+.+  .++|.|.+ +.++|.
T Consensus       108 ~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G--~v~s~e~A~~a~~--aGad~Ivv-s~hgG~  182 (336)
T 1ypf_A          108 YEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAG--NVGTPEAVRELEN--AGADATKV-GIGPGK  182 (336)
T ss_dssp             HHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEE--EECSHHHHHHHHH--HTCSEEEE-CSSCST
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEEC--CcCCHHHHHHHHH--cCCCEEEE-ecCCCc
Confidence            34566778889  9999886421 111226788999887  3333221  1245677777666  58999987 344442


Q ss_pred             CC-cc----c-ch-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           81 GG-QK----F-MP-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        81 ~g-q~----~-~~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .- +.    + .+ -.+.-+.++++.. +++|.+||||+ ...+.++...|||.+.+|++++.
T Consensus       183 ~~~~~~~~~~g~~g~~~~~l~~v~~~~-~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~  244 (336)
T 1ypf_A          183 VCITKIKTGFGTGGWQLAALRWCAKAA-SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAG  244 (336)
T ss_dssp             TCHHHHHHSCSSTTCHHHHHHHHHHTC-SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTT
T ss_pred             eeecccccCcCCchhHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhc
Confidence            10 00    0 00 0466677777764 89999999998 79999999999999999999873

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=98.13  E-value=2.9e-05  Score=62.04  Aligned_cols=128  Identities=17%  Similarity=0.217  Sum_probs=84.1

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCCc----------------chHHHHHHHHHHc-CCceEEEecCCC----CHHhHH
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEISK----------------DNWQELVQRIKSK-GMRPGVALKPGT----SVEEVY   59 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~-g~~~gl~l~~~t----~~~~~~   59 (157)
                      +|..|.+.   +.++ +|.|-+|.-.+.                ..+.++++++++. +..+++-+.+..    ..+.++
T Consensus        69 ~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~  147 (318)
T 1vhn_A           69 EPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYR  147 (318)
T ss_dssp             CHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHH
Confidence            46666544   4556 999999964432                1225678888875 777777766533    234444


Q ss_pred             hhHhcCCCCCeEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHH-cCCCEEEEcccccCC
Q 031554           60 PLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS-AGANCIVAGSSVFGA  136 (157)
Q Consensus        60 ~~~~~~~~~d~vl~m~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~-~Gad~vV~GSai~~~  136 (157)
                      .+.+  .++|+|.+.   ++...|.+. +..++.++++++   +++|.+.||| +.+.+.++.+ .|||.+.+|++++..
T Consensus       148 ~l~~--~G~d~i~v~---g~~~~~~~~~~~~~~~i~~i~~---~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~  219 (318)
T 1vhn_A          148 ILVE--EGVDEVFIH---TRTVVQSFTGRAEWKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGR  219 (318)
T ss_dssp             HHHH--TTCCEEEEE---SSCTTTTTSSCCCGGGGGGSCC---SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTC
T ss_pred             HHHH--hCCCEEEEc---CCCccccCCCCcCHHHHHHHHc---CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhC
Confidence            4443  579999774   333222211 122344555555   7899999999 5899999888 799999999998876


Q ss_pred             CCHH
Q 031554          137 PEPA  140 (157)
Q Consensus       137 ~d~~  140 (157)
                      ++.-
T Consensus       220 P~l~  223 (318)
T 1vhn_A          220 PWIF  223 (318)
T ss_dssp             TTHH
T ss_pred             cchH
Confidence            6553

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=98.12  E-value=7.8e-06  Score=63.24  Aligned_cols=85  Identities=12%  Similarity=0.183  Sum_probs=65.9

Q ss_pred             EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCE
Q 031554           48 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANC  126 (157)
Q Consensus        48 ~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~  126 (157)
                      .....+|++.++.|.+  .++|.+.+.-......+...   .++-|+++.+. ...+++++|||+ .++++.+.++|||-
T Consensus        27 ~~~~~dP~~~a~~~~~--~gad~lhvvDld~a~~~~~~---~~~~i~~i~~~-~~~pl~vGGGIrs~e~~~~~l~~Gadk  100 (243)
T 4gj1_A           27 KVYKYNPLKKFKEYEK--AGAKELHLVDLTGAKDPSKR---QFALIEKLAKE-VSVNLQVGGGIRSKEEVKALLDCGVKR  100 (243)
T ss_dssp             EECCCCHHHHHHHHHH--HTCCEEEEEEHHHHHCGGGC---CHHHHHHHHHH-CCSEEEEESSCCCHHHHHHHHHTTCSE
T ss_pred             cEeCCCHHHHHHHHHH--CCCCEEEEEecCcccccchh---HHHHHHHHHHh-cCCCeEeccccccHHHHHHHHHcCCCE
Confidence            3455789998888876  48899988877765555443   34455666655 368999999998 69999999999999


Q ss_pred             EEEcccccCCCC
Q 031554          127 IVAGSSVFGAPE  138 (157)
Q Consensus       127 vV~GSai~~~~d  138 (157)
                      +++||+.++.++
T Consensus       101 Vii~t~a~~~p~  112 (243)
T 4gj1_A          101 VVIGSMAIKDAT  112 (243)
T ss_dssp             EEECTTTTTCHH
T ss_pred             EEEccccccCCc
Confidence            999999997544

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.12  E-value=8.2e-05  Score=63.49  Aligned_cols=124  Identities=20%  Similarity=0.226  Sum_probs=83.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCce-EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRP-GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~-gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-   81 (157)
                      ...++.+.++|+|.+.+-.-.-  ... .+.++++|+.--.+ .++=|..|.. ..+.+++  .++|.|-+ ++=||.- 
T Consensus       283 ~eR~~aLv~AGvD~iviD~ahGhs~~v-~~~i~~ik~~~p~~~viaGNVaT~e-~a~~Li~--aGAD~vkV-GiGpGSiC  357 (556)
T 4af0_A          283 KDRLKLLAEAGLDVVVLDSSQGNSVYQ-IEFIKWIKQTYPKIDVIAGNVVTRE-QAAQLIA--AGADGLRI-GMGSGSIC  357 (556)
T ss_dssp             HHHHHHHHHTTCCEEEECCSCCCSHHH-HHHHHHHHHHCTTSEEEEEEECSHH-HHHHHHH--HTCSEEEE-CSSCSTTB
T ss_pred             HHHHHHHHhcCCcEEEEeccccccHHH-HHHHHHHHhhCCcceEEeccccCHH-HHHHHHH--cCCCEEee-cCCCCccc
Confidence            4567889999999999863221  223 78888888874333 3344556654 4455554  58999876 4555521 


Q ss_pred             --------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           82 --------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        82 --------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                              |-+ .-..+-.+.+.++. .+++|.+||||+ ..++...+.+|||.+-+||.+-+.
T Consensus       358 tTr~v~GvG~P-Q~tAi~~~a~~a~~-~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt  419 (556)
T 4af0_A          358 ITQEVMAVGRP-QGTAVYAVAEFASR-FGIPCIADGGIGNIGHIAKALALGASAVMMGGLLAGT  419 (556)
T ss_dssp             CCTTTCCSCCC-HHHHHHHHHHHHGG-GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             ccccccCCCCc-HHHHHHHHHHHHHH-cCCCEEecCCcCcchHHHHHhhcCCCEEEEchhhccc
Confidence                    111 11234445555544 368999999999 699999999999999999987653

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=98.10  E-value=3e-05  Score=66.60  Aligned_cols=134  Identities=10%  Similarity=0.145  Sum_probs=88.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcch-----------HHHHHHHHH-HcCC-ceEEEecCC---------------------
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDN-----------WQELVQRIK-SKGM-RPGVALKPG---------------------   52 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~-----------~~~~i~~ir-~~g~-~~gl~l~~~---------------------   52 (157)
                      +-++.+.++|||.|.+...+..++           -.+.++++. ++|. ++.+++.+.                     
T Consensus       351 ~~a~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~  430 (555)
T 1jvn_A          351 EVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPG  430 (555)
T ss_dssp             HHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCC
T ss_pred             HHHHHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccC
Confidence            557888999999999996653321           013444444 3463 455555431                     


Q ss_pred             ----------------------CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554           53 ----------------------TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG  110 (157)
Q Consensus        53 ----------------------t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG  110 (157)
                                            +.++.++.+.+  .+++.|++.++......+-+   .++.++++++.. ++++.+-||
T Consensus       431 ~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~--~Ga~~il~t~~~~dG~~~G~---d~~li~~l~~~~-~iPVIasGG  504 (555)
T 1jvn_A          431 PNGEKYCWYQCTIKGGRESRDLGVWELTRACEA--LGAGEILLNCIDKDGSNSGY---DLELIEHVKDAV-KIPVIASSG  504 (555)
T ss_dssp             TTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHH--TTCCEEEECCGGGTTTCSCC---CHHHHHHHHHHC-SSCEEECSC
T ss_pred             CCCCcceeEEEEEecCccCCCCCHHHHHHHHHH--cCCCEEEEeCCCCCCCCCCC---CHHHHHHHHHhC-CccEEEECC
Confidence                                  12455555554  47999998776642221222   356667777663 789999999


Q ss_pred             CC-HhhHHHHHH-cCCCEEEEcccccCCC-CHHHHHHHH
Q 031554          111 LG-PSTIAEAAS-AGANCIVAGSSVFGAP-EPAHVISLM  146 (157)
Q Consensus       111 I~-~~~i~~~~~-~Gad~vV~GSai~~~~-d~~~~~~~l  146 (157)
                      |+ .+++.++.+ .|+|.+++||+++..+ +..+..+.+
T Consensus       505 i~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l  543 (555)
T 1jvn_A          505 AGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYL  543 (555)
T ss_dssp             CCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHH
Confidence            96 799999987 8999999999988654 445544444

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=98.10  E-value=3e-05  Score=64.45  Aligned_cols=146  Identities=14%  Similarity=0.138  Sum_probs=91.6

Q ss_pred             hHHHHHHHHhC--CCCEEEEcccCC----------cchHHHHHHHHHHc---------------------CCc-eEEEec
Q 031554            5 PLDYVEPLGKA--GASGFTFHVEIS----------KDNWQELVQRIKSK---------------------GMR-PGVALK   50 (157)
Q Consensus         5 p~~~i~~~~~~--gad~v~vh~e~~----------~~~~~~~i~~ir~~---------------------g~~-~gl~l~   50 (157)
                      +++|++.+...  -+|++.+-.-++          .+.+.++++.+++.                     .+- +.+=+.
T Consensus       198 ~~Dy~~~a~~l~~~ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~  277 (415)
T 3i65_A          198 VDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLA  277 (415)
T ss_dssp             HHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEEC
T ss_pred             HHHHHHHHHHHHhhCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEec
Confidence            45665443222  389999875332          12235677777663                     233 356688


Q ss_pred             CCCCHHhHHhhHhc--CCCCCeEEEEeeeC-------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-H
Q 031554           51 PGTSVEEVYPLVEG--ANPVEMVLVMTVEP-------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-P  113 (157)
Q Consensus        51 ~~t~~~~~~~~~~~--~~~~d~vl~m~v~p-------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~  113 (157)
                      |+.+.+.+.++.+.  ..++|.|.+.....             |.+|....+..++-|+++++... +++|...|||+ .
T Consensus       278 pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~  357 (415)
T 3i65_A          278 PDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSG  357 (415)
T ss_dssp             SCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSH
T ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence            88775433332221  15899998763221             22344444567788999988754 69999999999 7


Q ss_pred             hhHHHHHHcCCCEEEEccccc-CCCCH-HHHHHHHHHHH
Q 031554          114 STIAEAASAGANCIVAGSSVF-GAPEP-AHVISLMRKSV  150 (157)
Q Consensus       114 ~~i~~~~~~Gad~vV~GSai~-~~~d~-~~~~~~l~~~~  150 (157)
                      +++.+++.+|||.+-+||+++ +.+.. .+..+.|++.+
T Consensus       358 eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l  396 (415)
T 3i65_A          358 LDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLL  396 (415)
T ss_dssp             HHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHHHHHH
Confidence            999999999999999999975 32433 23334444433

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=98.09  E-value=7.7e-06  Score=65.17  Aligned_cols=89  Identities=17%  Similarity=0.220  Sum_probs=62.8

Q ss_pred             HHHHHHHHHcC-C-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEE
Q 031554           32 QELVQRIKSKG-M-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~g-~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vd  108 (157)
                      .+.++.+|+.. - ++++.+  +|. +.+++.++  .++|+|.+-+         +.++.+.   ++++.. ++++|.+-
T Consensus       196 ~~ai~~~r~~~~~~kI~vev--~tl-ee~~eA~~--aGaD~I~ld~---------~~~e~l~---~~v~~~~~~~~I~AS  258 (296)
T 1qap_A          196 RQAVEKAFWLHPDVPVEVEV--ENL-DELDDALK--AGADIIMLDN---------FNTDQMR---EAVKRVNGQARLEVS  258 (296)
T ss_dssp             HHHHHHHHHHSTTSCEEEEE--SSH-HHHHHHHH--TTCSEEEESS---------CCHHHHH---HHHHTTCTTCCEEEC
T ss_pred             HHHHHHHHHhCCCCcEEEEe--CCH-HHHHHHHH--cCCCEEEECC---------CCHHHHH---HHHHHhCCCCeEEEE
Confidence            66777777753 2 567766  444 44554444  5899998732         3444444   444433 46899999


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      |||+++|++++.++|||.+.+||.+++++
T Consensus       259 GGIt~~~i~~~a~~GvD~isvGsli~~a~  287 (296)
T 1qap_A          259 GNVTAETLREFAETGVDFISVGALTKHVR  287 (296)
T ss_dssp             CCSCHHHHHHHHHTTCSEEECSHHHHEEE
T ss_pred             CCCCHHHHHHHHHcCCCEEEEeHHHcCCC
Confidence            99999999999999999999999876543

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=98.09  E-value=7e-05  Score=57.26  Aligned_cols=125  Identities=14%  Similarity=0.176  Sum_probs=78.6

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchH-----HHHHHHHHHcCCceEE--Eec-C--CCCHHhHHhhHhcCCCCCeEEEEee
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNW-----QELVQRIKSKGMRPGV--ALK-P--GTSVEEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~-----~~~i~~ir~~g~~~gl--~l~-~--~t~~~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      +-++.+.+.|+|.|.|..-..+..+     .+.++.++  |+.+-+  ++. .  .++.+.++.+.++  ++|.||--  
T Consensus        80 ~Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~--~~~vTFHRAFD~~~~~d~~~ale~L~~l--Gv~rILTS--  153 (224)
T 2bdq_A           80 EDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQ--GLPLVFHMAFDVIPKSDQKKSIDQLVAL--GFTRILLH--  153 (224)
T ss_dssp             HHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT--TCCEEECGGGGGSCTTTHHHHHHHHHHT--TCCEEEEC--
T ss_pred             HHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhC--CCeEEEECchhccCCcCHHHHHHHHHHc--CCCEEECC--
Confidence            3567889999999999976655421     33333332  444322  221 2  5566777777764  79999842  


Q ss_pred             eCCCCCccc--chhHHHHHHHHHhh-CCCCcEEEEcCCCHhhHHHHH-HcCCCEEEEcccccCCCCHHH
Q 031554           77 EPGFGGQKF--MPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVFGAPEPAH  141 (157)
Q Consensus        77 ~pG~~gq~~--~~~~~~ki~~l~~~-~~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~GSai~~~~d~~~  141 (157)
                        |  ++.-  ..+.++.++++.+. ...+.|.+.||||.+|++.+. +.|++-|=..+.+....||.+
T Consensus       154 --G--~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~GgGV~~~Ni~~l~~~tGv~e~H~s~i~~~~~~~~~  218 (224)
T 2bdq_A          154 --G--SSNGEPIIENIKHIKALVEYANNRIEIMVGGGVTAENYQYICQETGVKQAHGTRITQMAGDPLE  218 (224)
T ss_dssp             --S--CSSCCCGGGGHHHHHHHHHHHTTSSEEEECSSCCTTTHHHHHHHHTCCEEEETTCC--------
T ss_pred             --C--CCCCCcHHHHHHHHHHHHHhhCCCeEEEeCCCCCHHHHHHHHHhhCCCEEccccccCCCCCcch
Confidence              2  2222  45677788888664 346899999999999999987 689998864333445566643

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=98.09  E-value=1.5e-05  Score=64.97  Aligned_cols=130  Identities=15%  Similarity=0.121  Sum_probs=84.5

Q ss_pred             HHHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-C--CceEEEecCCC-------
Q 031554            9 VEPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-G--MRPGVALKPGT-------   53 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g--~~~gl~l~~~t-------   53 (157)
                      .+.+.++|+|.|-+|.-.         +      |          ..+.++++++|+. |  ..+++=++|.+       
T Consensus       164 A~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~  243 (363)
T 3l5l_A          164 ARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQ  243 (363)
T ss_dssp             HHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHH
T ss_pred             HHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCC
Confidence            345577899999999631         0      1          0125688888886 4  45788777642       


Q ss_pred             CHHh----HHhhHhcCCCCCeEEEEeeeCCCCC-cc--cch-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-
Q 031554           54 SVEE----VYPLVEGANPVEMVLVMTVEPGFGG-QK--FMP-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-  123 (157)
Q Consensus        54 ~~~~----~~~~~~~~~~~d~vl~m~v~pG~~g-q~--~~~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-  123 (157)
                      +.+.    ++.+.+  .++|+|-+..-  ++.. +.  ..+ ..++.++++|+.. +++|.+.|||+ ++++.++++.| 
T Consensus       244 ~~~~~~~la~~L~~--~Gvd~i~vs~g--~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~GgI~s~e~a~~~l~~G~  318 (363)
T 3l5l_A          244 TLEESIELARRFKA--GGLDLLSVSVG--FTIPDTNIPWGPAFMGPIAERVRREA-KLPVTSAWGFGTPQLAEAALQANQ  318 (363)
T ss_dssp             HHHHHHHHHHHHHH--TTCCEEEEEEC--CCSSCCCCCCCTTTTHHHHHHHHHHH-TCCEEECSSTTSHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHH--cCCCEEEEecC--ccccccccCCCcchhHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHCCC
Confidence            2222    233332  46899877531  1111 10  111 2344566666654 68899999995 99999999999 


Q ss_pred             CCEEEEcccccCCCCHHHHH
Q 031554          124 ANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       124 ad~vV~GSai~~~~d~~~~~  143 (157)
                      ||.|.+|++++..+|+-..+
T Consensus       319 aD~V~iGR~~lanPdl~~k~  338 (363)
T 3l5l_A          319 LDLVSVGRAHLADPHWAYFA  338 (363)
T ss_dssp             CSEEECCHHHHHCTTHHHHH
T ss_pred             ccEEEecHHHHhCchHHHHH
Confidence            99999999998878865443

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=98.07  E-value=0.00019  Score=55.07  Aligned_cols=119  Identities=18%  Similarity=0.203  Sum_probs=75.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc-CCceEEEecCCC----CHHhHHhhHh-c-CCCCCeEEEEee
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK-GMRPGVALKPGT----SVEEVYPLVE-G-ANPVEMVLVMTV   76 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g~~~gl~l~~~t----~~~~~~~~~~-~-~~~~d~vl~m~v   76 (157)
                      ++.+..+.+.+.+.|+|-+|.+-   + .++++.+++. |..+.=++...+    +.+....++. . ...+|++|+-+ 
T Consensus        80 ~~~ei~~~i~~~~ld~vQLHG~E---~-~~~~~~l~~~~~~~viKa~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs-  154 (228)
T 4aaj_A           80 GFSEWAMAIERTGAQYIQVHSNA---L-PQTIDTLKKEFGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADMVLLDT-  154 (228)
T ss_dssp             CHHHHHHHHHHHTCSEEEECSCC---C-HHHHHHHHHHHCCEEEEEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC-
T ss_pred             chHHHHHHHHhccchheeccccc---C-HHHHHHHhhccCceEEEEEEecccccchhhhHHHHHHHHhccCCCEEccCC-
Confidence            57777788888999999999763   3 4667777664 777655665332    2222221111 0 04689999875 


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEccccc
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVF  134 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~  134 (157)
                       +|.+|+.|.-..++.+.   .   +.++...||+|++|+.+.++ .++.+|=+-|.+=
T Consensus       155 -~GGtG~~fDW~~~~~~~---~---~~p~iLAGGL~peNV~~Ai~~~~P~gVDVsSGVE  206 (228)
T 4aaj_A          155 -GAGSGKLHDLRVSSLVA---R---KIPVIVAGGLNAENVEEVIKVVKPYGVDVSSGVE  206 (228)
T ss_dssp             --------CCCHHHHHHH---H---HSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGE
T ss_pred             -CCCCcCcCChHHHHHhh---h---cCCeEEECCCCHHHHHHHHHHhCCCEEEeCCCCC
Confidence             67788888765554443   2   35788999999999998755 6888887878774

>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A*

Probab=98.05  E-value=1.7e-05  Score=64.58  Aligned_cols=63  Identities=14%  Similarity=0.361  Sum_probs=49.3

Q ss_pred             HHHHHHhhCCCCcEEEEcCCCH--hhHHHHHHcCCC------EEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554           92 KVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGAN------CIVAGSSVFGAPEPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        92 ki~~l~~~~~~~~I~vdGGI~~--~~i~~~~~~Gad------~vV~GSai~~~~d~~~~~~~l~~~~~~~~~  155 (157)
                      .++.+|+..+++.+ +.-||.+  .+..+++++|+|      ++|+|++|.+++||.++++++++.+..+++
T Consensus       279 el~~IR~~~~~~~i-LtPGIgaqGGD~~~a~~~Gad~~~~~~iIvVGR~I~~A~dp~~AA~~i~~ei~~a~~  349 (353)
T 2ffc_A          279 EIKKIRELFPDCYI-LAPGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIKEVLA  349 (353)
T ss_dssp             HHHHHHHHCTTCCE-EECCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCeE-EeCcccCCCCCHHHHHHcCCCcccCcEEEEECHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            34555666566654 4567764  567788889998      999999999999999999999999887654

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=98.03  E-value=8.1e-05  Score=60.25  Aligned_cols=117  Identities=14%  Similarity=0.169  Sum_probs=91.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEEEeeeCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLVMTVEPG   79 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG   79 (157)
                      .++++.+.++|+|.+.+..-..  +.. .+.++++|++|+.+-..+  .+.++.+.+.++.+.  -.++|.|.+    ++
T Consensus        96 ~~~i~~a~~aGvd~v~I~~~~s~~~~~-~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l----~D  170 (345)
T 1nvm_A           96 VHDLKNAYQAGARVVRVATHCTEADVS-KQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYM----AD  170 (345)
T ss_dssp             HHHHHHHHHHTCCEEEEEEETTCGGGG-HHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEE----EC
T ss_pred             HHHHHHHHhCCcCEEEEEEeccHHHHH-HHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE----CC
Confidence            6799999999999998874222  344 899999999999988877  677888776665541  124787766    56


Q ss_pred             CCCcccchhHHHHHHHHHhhCC-CCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYP-SLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~-~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      +.|........+.++.+++..+ +.+|.+    |-|.-..|.-..+++||+.|
T Consensus       171 T~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~v  223 (345)
T 1nvm_A          171 SGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRV  223 (345)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEE
T ss_pred             CcCccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCEE
Confidence            6777666667778999999875 788988    67999999999999999976

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=98.01  E-value=7.5e-05  Score=61.27  Aligned_cols=125  Identities=13%  Similarity=0.114  Sum_probs=76.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccC-----Cc--chHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEI-----SK--DNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~-----~~--~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      ++.++.+.+.++|+|.+.+|...     ..  .++.+ +.++++. ++.+.+  .--.+.+.++.+.+  .++|.|.+ +
T Consensus       166 ~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~-i~~l~~~~~~pvi~--ggi~t~e~a~~~~~--~Gad~i~v-g  239 (393)
T 2qr6_A          166 NVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALN-LKEFIGSLDVPVIA--GGVNDYTTALHMMR--TGAVGIIV-G  239 (393)
T ss_dssp             THHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----C-HHHHHHHCSSCEEE--ECCCSHHHHHHHHT--TTCSEEEE-S
T ss_pred             cHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHH-HHHHHHhcCCCEEE--CCcCCHHHHHHHHH--cCCCEEEE-C
Confidence            34566777788999999998432     00  12133 5566654 544433  22344566666665  58999988 3


Q ss_pred             eeCCCCCcc---cchhHHHHHHHHHhh-------CC--CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           76 VEPGFGGQK---FMPEMMDKVRSLRNR-------YP--SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        76 v~pG~~gq~---~~~~~~~ki~~l~~~-------~~--~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      . -|.++..   +....++-+.++++.       ..  +++|.+||||+ ..++.++..+|||.+.+||++..
T Consensus       240 ~-Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~  311 (393)
T 2qr6_A          240 G-GENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLAR  311 (393)
T ss_dssp             C-CSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGG
T ss_pred             C-CcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHc
Confidence            3 1111111   112234444444332       22  38999999997 79999999999999999999643

>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}

Probab=97.98  E-value=3.7e-05  Score=64.57  Aligned_cols=64  Identities=19%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             HHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCE------EEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 031554           92 KVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANC------IVAGSSVFGAPEPAHVISLMRKSVEDAQKN  156 (157)
Q Consensus        92 ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~------vV~GSai~~~~d~~~~~~~l~~~~~~~~~~  156 (157)
                      .++.+|+..++..+.+ =||.  ..+..+.+++|+|.      +|+|+.|.+++||.++++++++.++..|++
T Consensus       184 e~~~ir~~~~~~~~l~-PGig~qg~tp~~a~~~g~d~~~~~~livvgR~I~~A~dp~~aa~~i~~~i~~~r~~  255 (453)
T 3qw4_B          184 ALARVRARAPTLWFLV-PGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAIRFA  255 (453)
T ss_dssp             HHHHHHHHCSSCCEEE-CCSSTTCCCHHHHHHHHCCTTSCCEEEEESHHHHSCSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhCCCCeEEE-CCcCCCCCCHHHHHHhcCCcccCCceEecChhhccCCCHHHHHHHHHHHHHHHHhc
Confidence            3456666655544544 4444  35888888899998      999999999999999999999999987764

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=97.98  E-value=2.8e-05  Score=61.43  Aligned_cols=47  Identities=17%  Similarity=0.208  Sum_probs=40.4

Q ss_pred             HHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           90 MDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        90 ~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      .+.|+++++... ++++.+.|||+ .++++++.++|||.+|+||++++.
T Consensus       214 ~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d  262 (286)
T 3vk5_A          214 PEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQP  262 (286)
T ss_dssp             HHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSST
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence            456667776654 78999999999 799999999999999999999974

>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ...

Probab=97.97  E-value=0.00014  Score=56.85  Aligned_cols=48  Identities=19%  Similarity=0.430  Sum_probs=41.0

Q ss_pred             CCCcEEEEcCCCHh-----------hHHHHH-HcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554          101 PSLDIEVDGGLGPS-----------TIAEAA-SAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus       101 ~~~~I~vdGGI~~~-----------~i~~~~-~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      +++ +.+.-||++.           |..+.+ ++|+|.+|+||.||+++||.++++.+++.
T Consensus       190 ~~f-~~vTPGIr~~~~~~~~~~r~~tp~~a~~~aGad~iVvGR~I~~a~dp~~a~~~~~~~  249 (260)
T 3eww_A          190 PEF-LHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKA  249 (260)
T ss_dssp             TTS-EEEECSBCSSSEECTTSCEEBCHHHHHTTSCCSEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred             CCc-EEECCCcCCCCCCCccCCCccCHHHHHHhcCCCEEEEChhhcCCCCHHHHHHHHHHH
Confidence            455 4578888864           688888 99999999999999999999999998864

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=97.97  E-value=0.00015  Score=60.75  Aligned_cols=104  Identities=19%  Similarity=0.201  Sum_probs=66.7

Q ss_pred             eEEEecCCCCHHh----HHhhHhcCCCCCeEEEEeeeC----------CCC---CcccchhHHHHHHHHHhhCC-CCcEE
Q 031554           45 PGVALKPGTSVEE----VYPLVEGANPVEMVLVMTVEP----------GFG---GQKFMPEMMDKVRSLRNRYP-SLDIE  106 (157)
Q Consensus        45 ~gl~l~~~t~~~~----~~~~~~~~~~~d~vl~m~v~p----------G~~---gq~~~~~~~~ki~~l~~~~~-~~~I~  106 (157)
                      +.+=+.|+...+.    ++.+.+  .++|.|.+-....          +++   |....+..++-++++++... +++|.
T Consensus       300 V~vKispd~~~ed~~~iA~~~~~--aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVI  377 (443)
T 1tv5_A          300 VFVKLAPDLNQEQKKEIADVLLE--TNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPII  377 (443)
T ss_dssp             EEEEECSCCCHHHHHHHHHHHHH--TTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEE
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEE
Confidence            4566888766443    233332  5799998753211          111   11112335677888888753 79999


Q ss_pred             EEcCCC-HhhHHHHHHcCCCEEEEcccc-cCCCCHH-HHHHHHHHHH
Q 031554          107 VDGGLG-PSTIAEAASAGANCIVAGSSV-FGAPEPA-HVISLMRKSV  150 (157)
Q Consensus       107 vdGGI~-~~~i~~~~~~Gad~vV~GSai-~~~~d~~-~~~~~l~~~~  150 (157)
                      ..|||+ .+.+.+.+.+|||.|-+||++ ++.+..- +..+.+.+.+
T Consensus       378 g~GGI~s~~DA~e~l~aGAd~Vqigrall~~gP~l~~~i~~~l~~~l  424 (443)
T 1tv5_A          378 ASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLL  424 (443)
T ss_dssp             EESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHcCCCEEEEcHHHHhcChHHHHHHHHHHHHHH
Confidence            999998 799999999999999999995 4444432 3333344433

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=97.96  E-value=8e-05  Score=60.39  Aligned_cols=132  Identities=11%  Similarity=0.147  Sum_probs=86.0

Q ss_pred             HHHHHhCCCCEEEEccc---------CC------c----------chHHHHHHHHHHc---CCceEEEecCCC------C
Q 031554            9 VEPLGKAGASGFTFHVE---------IS------K----------DNWQELVQRIKSK---GMRPGVALKPGT------S   54 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e---------~~------~----------~~~~~~i~~ir~~---g~~~gl~l~~~t------~   54 (157)
                      .+.+.++|+|.|-+|.-         ++      |          ..+.++++++|+.   .+.+++=++|..      +
T Consensus       149 A~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~  228 (343)
T 3kru_A          149 AKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGIN  228 (343)
T ss_dssp             HHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCC
T ss_pred             HhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCcc
Confidence            34457789999999931         11      1          1226788899986   356888888742      3


Q ss_pred             HHhHHhhHhc-CCCCCeEEEEeeeCCCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554           55 VEEVYPLVEG-ANPVEMVLVMTVEPGFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV  128 (157)
Q Consensus        55 ~~~~~~~~~~-~~~~d~vl~m~v~pG~~gq~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV  128 (157)
                      .+...++.+. -..+|+|-+.  ..++..+.   .....++.++++|+.. +++|.+.|||+ ++.+.++++.| ||.|.
T Consensus       229 ~~~~~~~a~~l~~~vd~i~vs--~g~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~  305 (343)
T 3kru_A          229 IDMMVEYINMIKDKVDLIDVS--SGGLLNVDINLYPGYQVKYAETIKKRC-NIKTSAVGLITTQELAEEILSNERADLVA  305 (343)
T ss_dssp             HHHHHHHHHHHTTTCSEEEEE--CCCSSCCCCCCCTTTTHHHHHHHHHHH-TCEEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred             HHHHHHHHHHhhccccEEecc--CCceEeeeecccCceeehHHHHHHHhc-CcccceeeeeeHHHHHHHHHhchhhHHHH
Confidence            4443333331 0228888763  11221111   1112355566677654 58999999996 89999999998 99999


Q ss_pred             EcccccCCCCHHHHH
Q 031554          129 AGSSVFGAPEPAHVI  143 (157)
Q Consensus       129 ~GSai~~~~d~~~~~  143 (157)
                      +|++++..||+-..+
T Consensus       306 iGR~~lanPdl~~k~  320 (343)
T 3kru_A          306 LGRELLRNPYWVLHT  320 (343)
T ss_dssp             ESHHHHHCTTHHHHT
T ss_pred             HHHHHhcCCeEEEEE
Confidence            999999888875544

>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}

Probab=97.94  E-value=0.00031  Score=54.60  Aligned_cols=128  Identities=18%  Similarity=0.248  Sum_probs=82.9

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCC--
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPV--   68 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~--   68 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  ...+         .+...++. +..+  
T Consensus        79 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--E~leere~g~t~~vv~~Ql~~~l~~~~~  155 (250)
T 1yya_A           79 ARMLSDLGCRYAIVGHSERRRYHGET-DALVAEKAKRLLEEGITPILCVG--EPLEVREKGEAVPYTLRQLRGSLEGVEP  155 (250)
T ss_dssp             HHHHHHTTCSEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHcCCCEEEeCchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhcCCH
Confidence            368899999999996        343 33446788888999999887774  3332         22222220 1233  


Q ss_pred             C-----eEEEEeeeC----CCCCcccchhH-HHHHHHHHhh---------CCCCcEEEEcCCCHhhHHHHHHc-CCCEEE
Q 031554           69 E-----MVLVMTVEP----GFGGQKFMPEM-MDKVRSLRNR---------YPSLDIEVDGGLGPSTIAEAASA-GANCIV  128 (157)
Q Consensus        69 d-----~vl~m~v~p----G~~gq~~~~~~-~~ki~~l~~~---------~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV  128 (157)
                      +     +|   .-+|    |++ +.-.|+. -+-.+.+|+.         ..+++|.-.|+++++|+.++.+. ++|++-
T Consensus       156 ~~~~~vvI---AYEPvWAIGTG-~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~L  231 (250)
T 1yya_A          156 PGPEALVI---AYEPVWAIGTG-KNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGL  231 (250)
T ss_dssp             SSGGGCEE---EECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEESSCCTTTHHHHHTSTTCCEEE
T ss_pred             HHcCcEEE---EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCCHHHHHHHHcCCCCCeeE
Confidence            3     33   3366    544 4444432 2223333332         14689999999999999999887 999999


Q ss_pred             EcccccCCCCHHHHH
Q 031554          129 AGSSVFGAPEPAHVI  143 (157)
Q Consensus       129 ~GSai~~~~d~~~~~  143 (157)
                      +|++..+++++...+
T Consensus       232 VGgAsL~a~~F~~ii  246 (250)
T 1yya_A          232 VGGASLELESFLALL  246 (250)
T ss_dssp             ESGGGSSHHHHHHHH
T ss_pred             eeHHHhChHHHHHHH
Confidence            999998766655443

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=97.94  E-value=0.00018  Score=58.67  Aligned_cols=122  Identities=19%  Similarity=0.266  Sum_probs=82.1

Q ss_pred             HHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-CC-ceEEEecCCC---------
Q 031554           10 EPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-GM-RPGVALKPGT---------   53 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t---------   53 (157)
                      +.+.++|+|.|-+|.-.         +      |          ..+.++++++|+. |. .+++=+++..         
T Consensus       168 ~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~  247 (361)
T 3gka_A          168 ENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSD  247 (361)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSC
T ss_pred             HHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCC
Confidence            34578899999999753         1      0          0226788888875 43 6888888753         


Q ss_pred             CHHhH---HhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEEE
Q 031554           54 SVEEV---YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        54 ~~~~~---~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~  129 (157)
                      +.+..   .+.++- .++|+|-+..   |..+.    ..   ++++|+.. +.+|.+-||++++.+.++++.| +|.|.+
T Consensus       248 ~~~~~~~la~~l~~-~Gvd~i~v~~---~~~~~----~~---~~~ik~~~-~iPvi~~Ggit~e~a~~~l~~G~aD~V~i  315 (361)
T 3gka_A          248 PAATFGHVARELGR-RRIAFLFARE---SFGGD----AI---GQQLKAAF-GGPFIVNENFTLDSAQAALDAGQADAVAW  315 (361)
T ss_dssp             HHHHHHHHHHHHHH-TTCSEEEEEC---CCSTT----CC---HHHHHHHH-CSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred             cHHHHHHHHHHHHH-cCCCEEEECC---CCCCH----HH---HHHHHHHc-CCCEEEeCCCCHHHHHHHHHcCCccEEEE
Confidence            23322   222322 4799997642   32221    22   34455543 4678899999999999999988 999999


Q ss_pred             cccccCCCCHHHHH
Q 031554          130 GSSVFGAPEPAHVI  143 (157)
Q Consensus       130 GSai~~~~d~~~~~  143 (157)
                      |++++..+|+-..+
T Consensus       316 GR~~ladPdl~~k~  329 (361)
T 3gka_A          316 GKLFIANPDLPRRF  329 (361)
T ss_dssp             SHHHHHCTTHHHHH
T ss_pred             CHHhHhCcHHHHHH
Confidence            99999888865443

>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*

Probab=97.93  E-value=0.00031  Score=54.52  Aligned_cols=130  Identities=15%  Similarity=0.232  Sum_probs=83.8

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HHhhHhc-CCCC--
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VYPLVEG-ANPV--   68 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~~~~~~-~~~~--   68 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++++.++|+.+.+=+.  .+.+.         +...++. +..+  
T Consensus        80 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~  156 (248)
T 1o5x_A           80 AEIAKDLNIEYVIIGHFERRKYFHET-DEDVREKLQASLKNNLKAVVCFG--ESLEQREQNKTIEVITKQVKAFVDLIDN  156 (248)
T ss_dssp             HHHHHHTTCCEEEECCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHTTGGGCCC
T ss_pred             HHHHHHcCCCEEEeCChhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCChHHHHHHHHHHHHhhhhh
Confidence            368899999999997        343 33446788889999999887774  33322         2222220 0222  


Q ss_pred             -CeEEEEeeeC----CCCCcccchhH-HHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHHHH-cCCCEEEEccc
Q 031554           69 -EMVLVMTVEP----GFGGQKFMPEM-MDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSS  132 (157)
Q Consensus        69 -d~vl~m~v~p----G~~gq~~~~~~-~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSa  132 (157)
                       .- ++..-+|    |++ ..-.|+. -+-.+.+|+    ++     .+++|.-.|+++++|+.++.+ .++|++-+|++
T Consensus       157 ~~~-~vIAYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgA  234 (248)
T 1o5x_A          157 FDN-VILVYEPLWAIGTG-KTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNA  234 (248)
T ss_dssp             TTS-EEEEECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCCTTTHHHHHTSTTCCEEEECGG
T ss_pred             hcC-EEEEECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCCCCHHHHHHHHcCCCCCeeEeeHH
Confidence             11 1234466    544 4444432 222333333    22     248999999999999999887 99999999999


Q ss_pred             ccCCCCHHHHHH
Q 031554          133 VFGAPEPAHVIS  144 (157)
Q Consensus       133 i~~~~d~~~~~~  144 (157)
                      ..+ +++...++
T Consensus       235 sL~-~~F~~ii~  245 (248)
T 1o5x_A          235 SLK-ESFVDIIK  245 (248)
T ss_dssp             GGS-TTHHHHHH
T ss_pred             HHH-HHHHHHHH
Confidence            998 88776554

>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}

Probab=97.91  E-value=0.00016  Score=55.70  Aligned_cols=126  Identities=13%  Similarity=0.137  Sum_probs=84.1

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH-----------HhhHhcCCCC-
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV-----------YPLVEGANPV-   68 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~-----------~~~~~~~~~~-   68 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++++.++|+.+.+=+.  .+.+..           ...+   ..+ 
T Consensus        74 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~~~t~~vv~~Ql---~~l~  147 (233)
T 2jgq_A           74 SKHLEELKIHTLLIGHSERRTLLKES-PSFLKEKFDFFKSKNFKIVYCIG--EELTTREKGFKAVKEFLSEQL---ENID  147 (233)
T ss_dssp             HHHHHHTTCCEEEECCHHHHHTTCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHHCHHHHHHHHHHHH---TTSC
T ss_pred             HHHHHHcCCCEEEeCchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCchhHHHHHHHHH---Hhhh
Confidence            368899999999997        343 33346688889999999887774  333322           2222   112 


Q ss_pred             ----CeEEEEeeeC----CCCCcccchh-HHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcccccCCC
Q 031554           69 ----EMVLVMTVEP----GFGGQKFMPE-MMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        69 ----d~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai~~~~  137 (157)
                          ..|  +.-+|    |++ ..-.++ .-+-.+.+|+.. .+++|.-.|+++++|+.++ ...++|++-+|++..+++
T Consensus       148 ~~~~~~v--IAYEPvWAIGTG-~~At~e~a~ev~~~IR~~l~~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsl~a~  224 (233)
T 2jgq_A          148 LNYPNLV--VAYEPIWAIGTK-KSASLEDIYLTHGFLKQILNQKTPLLYGGSVNTQNAKEILGIDSVDGLLIGSASWELE  224 (233)
T ss_dssp             TTCTTEE--EEECCGGGTTC---CCCHHHHHHHHHHHHHHSCTTSCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGSHH
T ss_pred             hhccceE--EEEeCHHHhCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEcCCcChhhHHHHhcCCCCCeeEecHHHhChH
Confidence                222  24466    544 444444 444466667665 5799999999999999875 678999999999998766


Q ss_pred             CHHHHH
Q 031554          138 EPAHVI  143 (157)
Q Consensus       138 d~~~~~  143 (157)
                      ++.+.+
T Consensus       225 ~f~~ii  230 (233)
T 2jgq_A          225 NFKTII  230 (233)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655443

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=97.91  E-value=0.00056  Score=56.10  Aligned_cols=125  Identities=15%  Similarity=0.126  Sum_probs=83.2

Q ss_pred             HHH-hCCCCEEEEcccC----------------Cc-----c------hHHHHHHHHHHc-CC-ceEEEecCCC-------
Q 031554           11 PLG-KAGASGFTFHVEI----------------SK-----D------NWQELVQRIKSK-GM-RPGVALKPGT-------   53 (157)
Q Consensus        11 ~~~-~~gad~v~vh~e~----------------~~-----~------~~~~~i~~ir~~-g~-~~gl~l~~~t-------   53 (157)
                      .+. ++|+|.|-+|.-.                .|     .      .+.++++++|+. |. .+++=|+|..       
T Consensus       182 ~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~  261 (379)
T 3aty_A          182 NAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMID  261 (379)
T ss_dssp             HHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCC
T ss_pred             HHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECcccccccCCC
Confidence            446 8999999999642                12     1      125677888875 42 4777777743       


Q ss_pred             --CHHhHHh---hHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEE
Q 031554           54 --SVEEVYP---LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCI  127 (157)
Q Consensus        54 --~~~~~~~---~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~v  127 (157)
                        +.+...+   .++- .++|+|-+..  +++..+.+..   + ++++|+.. +.+|.+.|||+.+.+.++++.| ||.|
T Consensus       262 ~~~~~~~~~la~~l~~-~Gvd~i~v~~--~~~~~~~~~~---~-~~~ir~~~-~iPvi~~G~it~~~a~~~l~~g~aD~V  333 (379)
T 3aty_A          262 SNPEALTKHLCKKIEP-LSLAYLHYLR--GDMVNQQIGD---V-VAWVRGSY-SGVKISNLRYDFEEADQQIREGKVDAV  333 (379)
T ss_dssp             SCHHHHHHHHHHHHGG-GCCSEEEEEC--SCTTSCCCCC---H-HHHHHTTC-CSCEEEESSCCHHHHHHHHHTTSCSEE
T ss_pred             CCCHHHHHHHHHHHHH-hCCCEEEEcC--CCcCCCCccH---H-HHHHHHHC-CCcEEEECCCCHHHHHHHHHcCCCeEE
Confidence              2232222   2222 4789987753  1212222222   4 67777764 6789999999999999999998 9999


Q ss_pred             EEcccccCCCCHHHHH
Q 031554          128 VAGSSVFGAPEPAHVI  143 (157)
Q Consensus       128 V~GSai~~~~d~~~~~  143 (157)
                      .+|++++..+++-..+
T Consensus       334 ~igR~~l~~P~l~~k~  349 (379)
T 3aty_A          334 AFGAKFIANPDLVERA  349 (379)
T ss_dssp             EESHHHHHCTTHHHHH
T ss_pred             EecHHHHhCcHHHHHH
Confidence            9999988778765444

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=97.87  E-value=0.00059  Score=55.81  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=78.6

Q ss_pred             HHHHhCCCCEEEEcccCC--------cc----hHHHHHHHHHHc-CCceEEE-ecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554           10 EPLGKAGASGFTFHVEIS--------KD----NWQELVQRIKSK-GMRPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~~--------~~----~~~~~i~~ir~~-g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      +.....++|...+|....        +.    ...+.++++++. +..+.+- +....+.+.++.+.+  .++|.|.+- 
T Consensus       142 ~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~--aGad~I~V~-  218 (368)
T 3vkj_A          142 DAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYS--YGIKNFDTS-  218 (368)
T ss_dssp             HHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHH--TTCCEEECC-
T ss_pred             HHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHh--CCCCEEEEe-
Confidence            333445777777774221        11    136788888886 5555553 334456677777766  589999763 


Q ss_pred             eeCCCCCcccc-------------------------hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554           76 VEPGFGGQKFM-------------------------PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA  129 (157)
Q Consensus        76 v~pG~~gq~~~-------------------------~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~  129 (157)
                         |.+|..|.                         ..+..-+.++++..++++|.++|||+ ..++.....+|||.+-+
T Consensus       219 ---g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~i  295 (368)
T 3vkj_A          219 ---GQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGM  295 (368)
T ss_dssp             ---CBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred             ---CCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence               22343221                         11234466677666679999999998 69999988999999999


Q ss_pred             ccccc
Q 031554          130 GSSVF  134 (157)
Q Consensus       130 GSai~  134 (157)
                      |+.++
T Consensus       296 g~~~l  300 (368)
T 3vkj_A          296 ALPVL  300 (368)
T ss_dssp             CHHHH
T ss_pred             cHHHH
Confidence            99765

>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...

Probab=97.86  E-value=0.00044  Score=53.71  Aligned_cols=130  Identities=16%  Similarity=0.226  Sum_probs=82.9

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH---------HhhHhc-CCCCC-
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV---------YPLVEG-ANPVE-   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~---------~~~~~~-~~~~d-   69 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  .+.+..         ...++. +..++ 
T Consensus        80 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~  156 (250)
T 2j27_A           80 LPILKDFGVNWIVLGHSERRAYYGET-NEIVADKVAAAVASGFMVIACIG--ETLQERESGRTAVVVLTQIAAIAKKLKK  156 (250)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHHTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHTCCG
T ss_pred             HHHHHHcCCCEEEECchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEeC--CCHHHhhcccHHHHHHHHHHHHHhcCCH
Confidence            368899999999997        343 33446788888899998887774  333221         111110 02221 


Q ss_pred             ----eEEEEeeeC----CCCCcccchhH-HHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEEc
Q 031554           70 ----MVLVMTVEP----GFGGQKFMPEM-MDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVAG  130 (157)
Q Consensus        70 ----~vl~m~v~p----G~~gq~~~~~~-~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~G  130 (157)
                          - ++..-+|    |++ ..-.|+. -+-.+.+|+    ++     .+++|.-.|+++++|+.++. ..++|++-+|
T Consensus       157 ~~~~~-~vIAYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVG  234 (250)
T 2j27_A          157 ADWAK-VVIAYEAVWAIGTG-KVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVG  234 (250)
T ss_dssp             GGGGG-EEEEEECGGGTTSS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCCTTTHHHHHTSTTCCEEEES
T ss_pred             HHhCC-EEEEECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHHHHHHHHcCCCCCeeeee
Confidence                1 1224466    544 4444432 222333333    22     24789999999999999987 8999999999


Q ss_pred             ccccCCCCHHHHHH
Q 031554          131 SSVFGAPEPAHVIS  144 (157)
Q Consensus       131 Sai~~~~d~~~~~~  144 (157)
                      ++..+ +++...++
T Consensus       235 gAsL~-~~F~~ii~  247 (250)
T 2j27_A          235 GASLK-PEFVDIIK  247 (250)
T ss_dssp             GGGGS-TTHHHHHH
T ss_pred             hHHHH-HHHHHHHH
Confidence            99998 88766553

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.86  E-value=0.00012  Score=62.08  Aligned_cols=126  Identities=17%  Similarity=0.136  Sum_probs=82.4

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHc--C-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSK--G-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~--g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      +....++.+.+.|++.+.++...... .+.+.++++++.  + ..+++-  .-...+.++.+.+  .++|.|.+ +..||
T Consensus       242 ~~~e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G--~V~t~~~a~~l~~--aGad~I~V-g~~~g  316 (503)
T 1me8_A          242 DFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAG--NIVDGEGFRYLAD--AGADFIKI-GIGGG  316 (503)
T ss_dssp             SHHHHHHHHHHHTCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEE--EECSHHHHHHHHH--HTCSEEEE-CSSCS
T ss_pred             hHHHHHHHHHhhhccceEEecccCcccchhhHHHHHHHhCCCCceEeec--cccCHHHHHHHHH--hCCCeEEe-cccCC
Confidence            44566888899999999997543221 125667888887  4 544431  1234555555555  48999988 88887


Q ss_pred             CC--Cccc----ch--hHHHHHHHHHhh-----CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554           80 FG--GQKF----MP--EMMDKVRSLRNR-----YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        80 ~~--gq~~----~~--~~~~ki~~l~~~-----~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ..  ...+    .|  ..+..+.+....     ..+++|.+||||. ...+....++|||.+.+||.+.
T Consensus       317 ~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~  385 (503)
T 1me8_A          317 SICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFA  385 (503)
T ss_dssp             TTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             cCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence            42  1100    11  233333333221     1268999999999 7999999999999999999874

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=97.86  E-value=0.00022  Score=58.26  Aligned_cols=122  Identities=16%  Similarity=0.209  Sum_probs=81.9

Q ss_pred             HHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-CC-ceEEEecCCC---------
Q 031554           10 EPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-GM-RPGVALKPGT---------   53 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t---------   53 (157)
                      +.+.++|+|.|-+|.-.         +      |          ..+.++++++|+. |. .+++=+++..         
T Consensus       160 ~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~  239 (362)
T 4ab4_A          160 ENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDAD  239 (362)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTT
T ss_pred             HHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCC
Confidence            44578899999999753         1      0          0125788888875 43 6888888763         


Q ss_pred             CHHhH---HhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEEE
Q 031554           54 SVEEV---YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        54 ~~~~~---~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~  129 (157)
                      +.+..   .+.++- .++|+|-+..   |..+.    ..   ++++|+.. +.++.+-||++++.+.++++.| +|.|.+
T Consensus       240 ~~~~~~~la~~l~~-~Gvd~i~v~~---~~~~~----~~---~~~ik~~~-~iPvi~~Ggit~e~a~~~l~~g~aD~V~i  307 (362)
T 4ab4_A          240 RAETFTYVARELGK-RGIAFICSRE---READD----SI---GPLIKEAF-GGPYIVNERFDKASANAALASGKADAVAF  307 (362)
T ss_dssp             HHHHHHHHHHHHHH-TTCSEEEEEC---CCCTT----CC---HHHHHHHH-CSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred             cHHHHHHHHHHHHH-hCCCEEEECC---CCCCH----HH---HHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCccEEEE
Confidence            23322   222222 4799997643   22222    22   34445543 4688899999999999999988 999999


Q ss_pred             cccccCCCCHHHHH
Q 031554          130 GSSVFGAPEPAHVI  143 (157)
Q Consensus       130 GSai~~~~d~~~~~  143 (157)
                      |++++..+|+-..+
T Consensus       308 GR~~lanPdl~~k~  321 (362)
T 4ab4_A          308 GVPFIANPDLPARL  321 (362)
T ss_dssp             SHHHHHCTTHHHHH
T ss_pred             CHHhHhCcHHHHHH
Confidence            99999888865443

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.85  E-value=0.00058  Score=57.35  Aligned_cols=125  Identities=22%  Similarity=0.230  Sum_probs=77.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcch--HHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDN--WQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~--~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      .+.++.+.++|+|.+.++... .+.  ..+.++++++.- ..+.+.=+.. ..+.+..+++  .++|.|.+ +.-||.-.
T Consensus       235 ~~~a~~l~~~G~d~ivi~~a~-g~~~~~~~~i~~l~~~~p~~pvi~G~v~-t~~~a~~~~~--~Gad~I~v-g~g~g~~~  309 (491)
T 1zfj_A          235 FERAEALFEAGADAIVIDTAH-GHSAGVLRKIAEIRAHFPNRTLIAGNIA-TAEGARALYD--AGVDVVKV-GIGPGSIC  309 (491)
T ss_dssp             HHHHHHHHHHTCSEEEECCSC-TTCHHHHHHHHHHHHHCSSSCEEEEEEC-SHHHHHHHHH--TTCSEEEE-CSSCCTTB
T ss_pred             HHHHHHHHHcCCCeEEEeeec-CcchhHHHHHHHHHHHCCCCcEeCCCcc-CHHHHHHHHH--cCCCEEEE-CccCCcce
Confidence            467888899999999999632 222  145667777652 2233321222 3355555554  58999976 44343210


Q ss_pred             c-----ccchhHHHHHHHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           83 Q-----KFMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        83 q-----~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .     .+....++-++++...  ..+++|.+||||+ ..++..+.++|||.+++|+++..
T Consensus       310 ~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~  370 (491)
T 1zfj_A          310 TTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAG  370 (491)
T ss_dssp             CHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             EEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhC
Confidence            0     0011123333444331  1378999999998 79999999999999999999874

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=97.85  E-value=5e-05  Score=58.32  Aligned_cols=79  Identities=18%  Similarity=0.189  Sum_probs=60.0

Q ss_pred             CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554           54 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        54 ~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa  132 (157)
                      +.+.++.+.+  .++|++.+......+.++.   ..++.++++++.. ++++.+.|||+ ++.+..+.++|||.+++|++
T Consensus        37 ~~~~a~~~~~--~G~~~i~v~d~~~~~~~~~---~~~~~i~~i~~~~-~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~  110 (247)
T 3tdn_A           37 LRDWVVEVEK--RGAGEILLTSIDRDGTKSG---YDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLRGADKVSINTA  110 (247)
T ss_dssp             HHHHHHHHHH--TTCSEEEEEETTTTTCSSC---CCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEECCSHH
T ss_pred             HHHHHHHHHH--cCCCEEEEEecCcccCCCc---ccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhH
Confidence            4566666664  5799998876654333332   3456777887774 79999999999 69999999999999999999


Q ss_pred             ccCCCC
Q 031554          133 VFGAPE  138 (157)
Q Consensus       133 i~~~~d  138 (157)
                      .+..++
T Consensus       111 ~l~dp~  116 (247)
T 3tdn_A          111 AVENPS  116 (247)
T ss_dssp             HHHCTH
T ss_pred             HhhChH
Confidence            886555

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=97.83  E-value=0.00037  Score=57.62  Aligned_cols=130  Identities=22%  Similarity=0.236  Sum_probs=85.2

Q ss_pred             HHHHhCCCCEEEEcccC---------------Cc----------chHHHHHHHHHHc-C-CceEEEecCCC---------
Q 031554           10 EPLGKAGASGFTFHVEI---------------SK----------DNWQELVQRIKSK-G-MRPGVALKPGT---------   53 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---------------~~----------~~~~~~i~~ir~~-g-~~~gl~l~~~t---------   53 (157)
                      +.+.++|+|.|-+|.-.               .|          ..+.++++++|+. | ..+++=+++..         
T Consensus       178 ~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~  257 (402)
T 2hsa_B          178 LNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSN  257 (402)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSC
T ss_pred             HHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCC
Confidence            34578999999999731               01          0126788888885 4 36888888753         


Q ss_pred             CHHhHH---hhHhcCCC------CCeEEEEeeeCCCCC---cc--c--ch-hHHHHHHHHHhhCCCCcEEEEcCCCHhhH
Q 031554           54 SVEEVY---PLVEGANP------VEMVLVMTVEPGFGG---QK--F--MP-EMMDKVRSLRNRYPSLDIEVDGGLGPSTI  116 (157)
Q Consensus        54 ~~~~~~---~~~~~~~~------~d~vl~m~v~pG~~g---q~--~--~~-~~~~ki~~l~~~~~~~~I~vdGGI~~~~i  116 (157)
                      +.+...   +.++- .+      +|+|-+..-  ....   .+  +  .+ ..++.++++|+.. +.+|.+-|||+++.+
T Consensus       258 ~~~~~~~la~~le~-~G~~gg~~vd~i~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~-~iPvi~~G~i~~~~a  333 (402)
T 2hsa_B          258 PLSLGLAVVERLNK-IQLHSGSKLAYLHVTQP--RYVAYGQTEAGRLGSEEEEARLMRTLRNAY-QGTFICSGGYTRELG  333 (402)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHTSCCSEEEEECC--CCCTTTTSSSTTTTHHHHHHHHHHHHHHHC-SSCEEEESSCCHHHH
T ss_pred             CHHHHHHHHHHHHh-cCCccCCceEEEEEecC--ccccccCCccccccCCcchHHHHHHHHHHC-CCCEEEeCCCCHHHH
Confidence            122222   22221 35      898877531  1111   11  0  01 2355677777775 678999999999999


Q ss_pred             HHHHHcC-CCEEEEcccccCCCCHHHHH
Q 031554          117 AEAASAG-ANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       117 ~~~~~~G-ad~vV~GSai~~~~d~~~~~  143 (157)
                      .++++.| ||.|-+|++++..+++-..+
T Consensus       334 ~~~l~~g~aD~V~igR~~l~dP~l~~k~  361 (402)
T 2hsa_B          334 IEAVAQGDADLVSYGRLFISNPDLVMRI  361 (402)
T ss_dssp             HHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             HHHHHCCCCceeeecHHHHhCchHHHHH
Confidence            9999988 99999999998878765544

>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*

Probab=97.82  E-value=0.0005  Score=53.56  Aligned_cols=122  Identities=19%  Similarity=0.244  Sum_probs=79.6

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH-------------hHHhhHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE-------------EVYPLVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~-------------~~~~~~~~~~~   67 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  ..++             .+...+   ..
T Consensus        83 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~V~~Kv~~Al~~GL~pIlCvG--Etleere~g~t~~vv~~Ql~~~l---~~  156 (254)
T 3m9y_A           83 PVALADLGVKYVVIGHSERRELFHET-DEEINKKAHAIFKHGMTPIICVG--ETDEERESGKANDVVGEQVKKAV---AG  156 (254)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHH---TT
T ss_pred             HHHHHHcCCCEEEECcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHHCCCHHHHHHHHHHHHH---hc
Confidence            368899999999996        343 33336667889999999888774  3332             233334   44


Q ss_pred             CC-------eEEEEeeeC----CCCCcccchhH----HHHHHHHH-hhC-----CCCcEEEEcCCCHhhHHHHH-HcCCC
Q 031554           68 VE-------MVLVMTVEP----GFGGQKFMPEM----MDKVRSLR-NRY-----PSLDIEVDGGLGPSTIAEAA-SAGAN  125 (157)
Q Consensus        68 ~d-------~vl~m~v~p----G~~gq~~~~~~----~~ki~~l~-~~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad  125 (157)
                      ++       +|.+   +|    | +|..-.++.    ...||+.- +.+     .+++|...|+++++|+.++. ..++|
T Consensus       157 ~~~~~~~~vvIAY---EPvWAIG-TG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diD  232 (254)
T 3m9y_A          157 LSEDQLKSVVIAY---EPIWAIG-TGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDID  232 (254)
T ss_dssp             CCHHHHHHCEEEE---CCGGGCC---CCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSEEEECSCCCTTTHHHHHTSTTCC
T ss_pred             CCHHHhCCEEEEE---CChhhhc-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHHHHHHcCCCCC
Confidence            43       3433   55    4 344444443    23344421 122     36899999999999999987 88999


Q ss_pred             EEEEcccccCCCCHH
Q 031554          126 CIVAGSSVFGAPEPA  140 (157)
Q Consensus       126 ~vV~GSai~~~~d~~  140 (157)
                      ++-+|++-.++++..
T Consensus       233 G~LVGgASL~~~~F~  247 (254)
T 3m9y_A          233 GALVGGASLKVEDFV  247 (254)
T ss_dssp             EEEESGGGSSHHHHH
T ss_pred             eEEeeHHhhCHHHHH
Confidence            999999988644433

>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A

Probab=97.81  E-value=0.00059  Score=53.08  Aligned_cols=129  Identities=19%  Similarity=0.283  Sum_probs=81.6

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCC-
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVE-   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d-   69 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  .+.+         .+...++. +..++ 
T Consensus        79 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~  155 (252)
T 2btm_A           79 PVMLKDLGVTYVILGHSERRQMFAET-DETVNKKVLAAFTRGLIPIICCG--ESLEEREAGQTNAVVASQVEKALAGLTP  155 (252)
T ss_dssp             HHHHHHHTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHHTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHcCCCEEEeCchhcccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence            367899999999996        343 33335668888899999888774  3332         22222210 03332 


Q ss_pred             -----eEEEEeeeC----CCCCcccchh----HHHHHHHH-Hhh-----CCCCcEEEEcCCCHhhHHHHH-HcCCCEEEE
Q 031554           70 -----MVLVMTVEP----GFGGQKFMPE----MMDKVRSL-RNR-----YPSLDIEVDGGLGPSTIAEAA-SAGANCIVA  129 (157)
Q Consensus        70 -----~vl~m~v~p----G~~gq~~~~~----~~~ki~~l-~~~-----~~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~  129 (157)
                           .|+  .-+|    |++ ..-.|+    +...||+. +++     ..+++|.-.|+++++|+.++. ..++|++-+
T Consensus       156 ~~~~~~vI--AYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV  232 (252)
T 2btm_A          156 EQVKQAVI--AYEPIWAIGTG-KSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALV  232 (252)
T ss_dssp             HHHTTCEE--EECCGGGTTTS-CCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEESSCCTTTHHHHHTSTTCCEEEE
T ss_pred             HHcCCEEE--EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCCHHHHHHHHcCCCCCeeEe
Confidence                 122  3366    544 443443    23334432 111     246899999999999999887 899999999


Q ss_pred             cccccCCCCHHHHH
Q 031554          130 GSSVFGAPEPAHVI  143 (157)
Q Consensus       130 GSai~~~~d~~~~~  143 (157)
                      |++..+++++..-+
T Consensus       233 GgAsL~a~~F~~Ii  246 (252)
T 2btm_A          233 GGASLEPASFLQLV  246 (252)
T ss_dssp             SGGGSSHHHHHHHH
T ss_pred             cHHHhChHHHHHHH
Confidence            99998766555443

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.81  E-value=0.00013  Score=63.55  Aligned_cols=132  Identities=14%  Similarity=0.098  Sum_probs=82.9

Q ss_pred             HHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-C--CceEEEecCC------CCH
Q 031554           10 EPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-G--MRPGVALKPG------TSV   55 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g--~~~gl~l~~~------t~~   55 (157)
                      +.+.++|+|.|-+|.-.         +      |          ..+.++++++|+. |  ..+++=++|.      .+.
T Consensus       148 ~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~  227 (671)
T 1ps9_A          148 QLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTF  227 (671)
T ss_dssp             HHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCH
T ss_pred             HHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCH
Confidence            44578999999999532         0      0          0126788888885 4  3345545542      233


Q ss_pred             HhHHh---hHhcCCCCCeEEEEee--eCCCCC-ccc-c-hhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcC-CC
Q 031554           56 EEVYP---LVEGANPVEMVLVMTV--EPGFGG-QKF-M-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-AN  125 (157)
Q Consensus        56 ~~~~~---~~~~~~~~d~vl~m~v--~pG~~g-q~~-~-~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~G-ad  125 (157)
                      +...+   .++- .++|++-+..-  ++.+.. +.. . ...++.++++|+.. +++|.+.||| +++++.++++.| ||
T Consensus       228 ~~~~~~a~~l~~-~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~iPvi~~Ggi~~~~~a~~~l~~g~aD  305 (671)
T 1ps9_A          228 AETVELAQAIEA-AGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV-SLPLVTTNRINDPQVADDILSRGDAD  305 (671)
T ss_dssp             HHHHHHHHHHHH-HTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC-SSCEEECSSCCSHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHHHh-cCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCC
Confidence            33222   2222 47899976421  111100 011 1 12345677777764 7899999999 699999999998 99


Q ss_pred             EEEEcccccCCCCHHHHH
Q 031554          126 CIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       126 ~vV~GSai~~~~d~~~~~  143 (157)
                      .+.+|++++..+|+-..+
T Consensus       306 ~V~~gR~~l~~P~l~~k~  323 (671)
T 1ps9_A          306 MVSMARPFLADAELLSKA  323 (671)
T ss_dssp             EEEESTHHHHCTTHHHHH
T ss_pred             EEEeCHHHHhCcHHHHHH
Confidence            999999999878875443

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=97.81  E-value=0.00033  Score=57.36  Aligned_cols=128  Identities=16%  Similarity=0.192  Sum_probs=82.3

Q ss_pred             HHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-CC-ceEEEecCCC---------C
Q 031554           11 PLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-GM-RPGVALKPGT---------S   54 (157)
Q Consensus        11 ~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t---------~   54 (157)
                      .+.++|+|.|-+|.-.         +      |          ..+.++++++|+. |. .+++-+++..         +
T Consensus       175 ~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~  254 (376)
T 1icp_A          175 NAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNP  254 (376)
T ss_dssp             HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCH
T ss_pred             HHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCC
Confidence            5578999999999642         0      1          0126778888885 43 7888888652         2


Q ss_pred             HHh---HHhhHhcCCCCCeEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEEE
Q 031554           55 VEE---VYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        55 ~~~---~~~~~~~~~~~d~vl~m~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~  129 (157)
                      .+.   +.+.++- .++|+|-+..   |...+... ....+.++++|+.. +.+|.+-|||+.+.+.++++.| ||.|-+
T Consensus       255 ~~~~~~la~~le~-~Gvd~i~v~~---~~~~~~~~~~~~~~~~~~vr~~~-~iPvi~~G~i~~~~a~~~l~~g~aD~V~~  329 (376)
T 1icp_A          255 TALGLYMVESLNK-YDLAYCHVVE---PRMKTAWEKIECTESLVPMRKAY-KGTFIVAGGYDREDGNRALIEDRADLVAY  329 (376)
T ss_dssp             HHHHHHHHHHHGG-GCCSEEEEEC---CSCCC------CCCCSHHHHHHC-CSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred             HHHHHHHHHHHHH-cCCCEEEEcC---CcccCCCCccccHHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHCCCCcEEee
Confidence            222   2223322 4789987742   21111000 01122345566654 5789999999999999999988 999999


Q ss_pred             cccccCCCCHHHHH
Q 031554          130 GSSVFGAPEPAHVI  143 (157)
Q Consensus       130 GSai~~~~d~~~~~  143 (157)
                      |++++..+++-..+
T Consensus       330 gR~~l~~P~l~~k~  343 (376)
T 1icp_A          330 GRLFISNPDLPKRF  343 (376)
T ss_dssp             SHHHHHCTTHHHHH
T ss_pred             cHHHHhCccHHHHH
Confidence            99998878765544

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=97.78  E-value=0.0007  Score=55.06  Aligned_cols=97  Identities=16%  Similarity=0.248  Sum_probs=66.5

Q ss_pred             HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEc
Q 031554           32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdG  109 (157)
                      -+.++++|+. +..+.+-..  ...+..+...+  .++|.|.+-. +.| ......+..++-+.++++. ..+++|.+||
T Consensus       206 w~~i~~lr~~~~~PvivK~v--~~~e~A~~a~~--~GaD~I~vsn-~GG-~~~d~~~~~~~~L~~i~~av~~~ipVia~G  279 (352)
T 3sgz_A          206 WNDLSLLQSITRLPIILKGI--LTKEDAELAMK--HNVQGIVVSN-HGG-RQLDEVSASIDALREVVAAVKGKIEVYMDG  279 (352)
T ss_dssp             HHHHHHHHHHCCSCEEEEEE--CSHHHHHHHHH--TTCSEEEECC-GGG-TSSCSSCCHHHHHHHHHHHHTTSSEEEEES
T ss_pred             HHHHHHHHHhcCCCEEEEec--CcHHHHHHHHH--cCCCEEEEeC-CCC-CccCCCccHHHHHHHHHHHhCCCCeEEEEC
Confidence            3578888886 555555432  34566666655  5899998742 222 1111234466667776654 3479999999


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          110 GLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ||+ ..++.+...+|||.+-+|++++
T Consensus       280 GI~~g~Dv~kaLalGA~aV~iGr~~l  305 (352)
T 3sgz_A          280 GVRTGTDVLKALALGARCIFLGRPIL  305 (352)
T ss_dssp             SCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             CCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            998 6899988899999999999854

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=97.78  E-value=0.00031  Score=68.19  Aligned_cols=123  Identities=14%  Similarity=0.166  Sum_probs=88.5

Q ss_pred             HHHHHHHhCCCCE--EEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHh---hHhcCCCCCeEEEEeeeC-CC
Q 031554            7 DYVEPLGKAGASG--FTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP---LVEGANPVEMVLVMTVEP-GF   80 (157)
Q Consensus         7 ~~i~~~~~~gad~--v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~---~~~~~~~~d~vl~m~v~p-G~   80 (157)
                      ..++.+.+.|++.  |+++.-.+ .. ++.++.++++|+++...+.  +..+..+.   +.+  .++|.|.+|-++- ..
T Consensus       657 ~~~~~~~~~gv~i~gv~~~~G~p-~~-e~~~~~l~~~gi~~i~~v~--~~~~a~~~v~~l~~--aG~D~iV~~q~~G~ea  730 (2060)
T 2uva_G          657 PLLGRLRADGVPIEGLTIGAGVP-SI-EVANEYIQTLGIRHISFKP--GSVDAIQQVINIAK--ANPTFPIILQWTGGRG  730 (2060)
T ss_dssp             HHHHHHHTTTCCEEEEEEESSCC-CH-HHHHHHHHHSCCSEEEECC--CSHHHHHHHHHHHH--HCTTSCEEEEECCTTS
T ss_pred             HHHHHHHHcCCCcceEeecCCCC-CH-HHHHHHHHHcCCeEEEecC--CHHHHHHHHHHHHH--cCCCEEEEeeeEcccC
Confidence            6788899999999  99987653 33 5788999999988775442  33333322   233  5899998554442 12


Q ss_pred             CCc-c---cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH-----------HcCCCEEEEcccccCC
Q 031554           81 GGQ-K---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-----------SAGANCIVAGSSVFGA  136 (157)
Q Consensus        81 ~gq-~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~-----------~~Gad~vV~GSai~~~  136 (157)
                      +|. .   +....+..+.++++.. ++++.++|||. .+.+..+.           .+|||++-+||.+...
T Consensus       731 GGH~g~~d~~~~~l~lv~~i~~~~-~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t  801 (2060)
T 2uva_G          731 GGHHSFEDFHQPILLMYSRIRKCS-NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTA  801 (2060)
T ss_dssp             SSSCCSCCSHHHHHHHHHHHHTST-TEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGB
T ss_pred             CCCCCcccccchHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcC
Confidence            222 1   1245677888888864 79999999999 69999999           9999999999987643

>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A

Probab=97.78  E-value=0.00025  Score=55.27  Aligned_cols=129  Identities=18%  Similarity=0.243  Sum_probs=81.8

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HH----hhHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VY----PLVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~----~~~~~~~~   67 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  ...+.         +.    ..++. -.
T Consensus        82 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~-~~  157 (256)
T 1aw2_A           82 PAMLKEFGATHIIIGHSERREYHAES-DEFVAKKFAFLKENGLTPVLCIG--ESDAQNEAGETMAVCARQLDAVINT-QG  157 (256)
T ss_dssp             HHHHHHHTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHHTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHH-HC
T ss_pred             HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhc-CC
Confidence            368899999999996        343 33335668888899999887774  33322         11    22210 01


Q ss_pred             CC----eEEEEeeeC----CCCCcccchhHH-HHHHHHHhh---C-----CCCcEEEEcCCCHhhHHHHHHc-CCCEEEE
Q 031554           68 VE----MVLVMTVEP----GFGGQKFMPEMM-DKVRSLRNR---Y-----PSLDIEVDGGLGPSTIAEAASA-GANCIVA  129 (157)
Q Consensus        68 ~d----~vl~m~v~p----G~~gq~~~~~~~-~ki~~l~~~---~-----~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~  129 (157)
                      .+    .|+  .-+|    |+ |+.-.|+.. +-.+.+|+.   .     .+++|.-.|+++++|+.++.+. ++|++-+
T Consensus       158 ~~~~~~vvI--AYEPvWAIGT-G~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV  234 (256)
T 1aw2_A          158 VEALEGAII--AYEPIWAIGT-GKAATAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALV  234 (256)
T ss_dssp             GGGGTTCEE--EECCTTTTTS-SCCCCHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCCCTTTHHHHTTSTTCCEEEE
T ss_pred             HHHcCCEEE--EECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHHHHHHHHcCCCCCeeee
Confidence            12    222  3366    54 444444422 223333432   1     2478999999999999998877 9999999


Q ss_pred             cccccCCCCHHHHHH
Q 031554          130 GSSVFGAPEPAHVIS  144 (157)
Q Consensus       130 GSai~~~~d~~~~~~  144 (157)
                      |++..+++++..-++
T Consensus       235 GgAsL~a~~F~~Ii~  249 (256)
T 1aw2_A          235 GGAALDAKSFAAIAK  249 (256)
T ss_dssp             SGGGGCHHHHHHHHH
T ss_pred             cHHHhChHHHHHHHH
Confidence            999997666655544

>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A

Probab=97.75  E-value=0.0012  Score=51.39  Aligned_cols=128  Identities=20%  Similarity=0.216  Sum_probs=80.5

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HH----hhHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VY----PLVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~----~~~~~~~~   67 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  ..++.         +.    ..++..+.
T Consensus        81 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~  157 (257)
T 2yc6_A           81 VEMLQDMGLKHVIVGHSERRRIMGET-DEQSAKKAKRALEKGMTVIFCVG--ETLDERKANRTMEVNIAQLEALGKELGE  157 (257)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence            368899999999997        343 33446688888999999887774  33322         11    22210001


Q ss_pred             CC-----eEEEEeeeC----CCCCcccchhH-HHHHHHHHhh---------CCCCcEEEEcCCCHhhHHHHHHc-CCCEE
Q 031554           68 VE-----MVLVMTVEP----GFGGQKFMPEM-MDKVRSLRNR---------YPSLDIEVDGGLGPSTIAEAASA-GANCI  127 (157)
Q Consensus        68 ~d-----~vl~m~v~p----G~~gq~~~~~~-~~ki~~l~~~---------~~~~~I~vdGGI~~~~i~~~~~~-Gad~v  127 (157)
                      .+     .|+  .-+|    |++ ..-.|+. -+-.+.+|+.         ..+++|.-.|+++++|+.++... ++|++
T Consensus       158 ~~~~~~~vvI--AYEPvWAIGTG-~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~  234 (257)
T 2yc6_A          158 SKMLWKEVVI--AYEPVWSIGTG-VVATPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGGSANGSNNEKLGQCPNIDGF  234 (257)
T ss_dssp             CHHHHHTEEE--EECCGGGTTTS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHHTSTTCCEE
T ss_pred             hhhccCCEEE--EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCccCHHHHHHHHcCCCCCee
Confidence            12     122  3466    544 4434432 2223333332         24689999999999999999887 99999


Q ss_pred             EEcccccCCCCHHHHH
Q 031554          128 VAGSSVFGAPEPAHVI  143 (157)
Q Consensus       128 V~GSai~~~~d~~~~~  143 (157)
                      -+|++..+++ ..+-+
T Consensus       235 LVGgAsL~a~-F~~Ii  249 (257)
T 2yc6_A          235 LVGGASLKPE-FMTMI  249 (257)
T ss_dssp             EESGGGGSTH-HHHHH
T ss_pred             eecHHHHHHH-HHHHH
Confidence            9999988755 44433

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=97.74  E-value=0.00086  Score=54.76  Aligned_cols=96  Identities=19%  Similarity=0.235  Sum_probs=65.0

Q ss_pred             HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCC-CCcEEEE
Q 031554           32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYP-SLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~-~~~~~~~ki~~l~~~~~-~~~I~vd  108 (157)
                      .+.++++|+. +..+.+-..  ...+.++...+  .++|.|.+- -+.|  .|. ..+..++-+.++++..+ +++|.+|
T Consensus       218 ~~~i~~lr~~~~~PvivK~v--~~~e~a~~a~~--~Gad~I~vs-~~gg--r~~~~g~~~~~~l~~v~~~v~~~ipVia~  290 (368)
T 2nli_A          218 PRDIEEIAGHSGLPVFVKGI--QHPEDADMAIK--RGASGIWVS-NHGA--RQLYEAPGSFDTLPAIAERVNKRVPIVFD  290 (368)
T ss_dssp             HHHHHHHHHHSSSCEEEEEE--CSHHHHHHHHH--TTCSEEEEC-CGGG--TSCSSCCCHHHHHHHHHHHHTTSSCEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEcC--CCHHHHHHHHH--cCCCEEEEc-CCCc--CCCCCCCChHHHHHHHHHHhCCCCeEEEE
Confidence            3457888885 554444211  34566666555  589999873 2222  121 23446677777776543 6999999


Q ss_pred             cCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          109 GGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       109 GGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      |||+ .+.+.++...|||.+-+|+.++
T Consensus       291 GGI~~g~D~~kalalGAd~V~iGr~~l  317 (368)
T 2nli_A          291 SGVRRGEHVAKALASGADVVALGRPVL  317 (368)
T ss_dssp             SSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            9999 6999999999999999999754

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=97.73  E-value=0.0011  Score=53.97  Aligned_cols=97  Identities=14%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             HHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcC
Q 031554           33 ELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGG  110 (157)
Q Consensus        33 ~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGG  110 (157)
                      +.++++++. ++.+.+-..  ...+.++...+  .++|.|.+- -+.|.. ....+..++-+.++++..+ +++|.++||
T Consensus       215 ~~i~~l~~~~~~pv~vK~~--~~~e~a~~a~~--~Gad~I~vs-~~ggr~-~~~~~~~~~~l~~v~~~~~~~ipvia~GG  288 (370)
T 1gox_A          215 KDVAWLQTITSLPILVKGV--ITAEDARLAVQ--HGAAGIIVS-NHGARQ-LDYVPATIMALEEVVKAAQGRIPVFLDGG  288 (370)
T ss_dssp             HHHHHHHHHCCSCEEEECC--CSHHHHHHHHH--TTCSEEEEC-CGGGTS-STTCCCHHHHHHHHHHHTTTSSCEEEESS
T ss_pred             HHHHHHHHHhCCCEEEEec--CCHHHHHHHHH--cCCCEEEEC-CCCCcc-CCCcccHHHHHHHHHHHhCCCCEEEEECC
Confidence            557777775 555544221  33556666655  589999872 232211 1112346667777777643 799999999


Q ss_pred             CC-HhhHHHHHHcCCCEEEEcccccC
Q 031554          111 LG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus       111 I~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      |+ .+++.++..+|||.+.+|++++.
T Consensus       289 I~~~~D~~k~l~~GAdaV~iGr~~l~  314 (370)
T 1gox_A          289 VRRGTDVFKALALGAAGVFIGRPVVF  314 (370)
T ss_dssp             CCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             CCCHHHHHHHHHcCCCEEeecHHHHH
Confidence            97 68999999999999999998763

>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A

Probab=97.72  E-value=0.00038  Score=54.21  Aligned_cols=130  Identities=18%  Similarity=0.247  Sum_probs=82.5

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HH----hhHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VY----PLVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~----~~~~~~~~   67 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  ...+.         +.    ..++. -.
T Consensus        80 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~-~~  155 (255)
T 1tre_A           80 AAMLKDIGAQYIIIGHSERRTYHKES-DELIAKKFAVLKEQGLTPVLCIG--ETEAENEAGKTEEVCARQIDAVLKT-QG  155 (255)
T ss_dssp             HHHHHHHTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHH-HC
T ss_pred             HHHHHHcCCCEEEECccccccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhc-CC
Confidence            367899999999996        343 33335668888999999887774  33322         11    22210 01


Q ss_pred             CC----eEEEEeeeC----CCCCcccchh-HHHHHHHHHhh--------CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEE
Q 031554           68 VE----MVLVMTVEP----GFGGQKFMPE-MMDKVRSLRNR--------YPSLDIEVDGGLGPSTIAEAAS-AGANCIVA  129 (157)
Q Consensus        68 ~d----~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~~--------~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~  129 (157)
                      .+    .|+  .-+|    |++ ..-.|+ .-+-.+.+|+.        ..+++|.-.|+++++|+.++.. .++|++-+
T Consensus       156 ~~~~~~vvI--AYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV  232 (255)
T 1tre_A          156 AAAFEGAVI--AYEPVWAIGTG-KSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALV  232 (255)
T ss_dssp             GGGGTTCEE--EECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEE
T ss_pred             HHHcCcEEE--EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCCCHHHHHHHHcCCCCCeeEe
Confidence            12    222  3366    544 433443 22223333332        1358999999999999999887 99999999


Q ss_pred             cccccCCCCHHHHHHH
Q 031554          130 GSSVFGAPEPAHVISL  145 (157)
Q Consensus       130 GSai~~~~d~~~~~~~  145 (157)
                      |++..+++++...++.
T Consensus       233 GgAsL~a~~F~~Ii~~  248 (255)
T 1tre_A          233 GGASLKADAFAVIVKA  248 (255)
T ss_dssp             SGGGGCHHHHHHHHHH
T ss_pred             cHHHhChHHHHHHHHH
Confidence            9999977776665553

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.0001  Score=57.47  Aligned_cols=74  Identities=18%  Similarity=0.136  Sum_probs=56.4

Q ss_pred             cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554           50 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        50 ~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                      ...+|++.++.|.+  .++|.+-+.-+++         ...+-|+++++.. ..++.++|||+..++..+. +|||.+++
T Consensus        36 ~~~dp~~~A~~~~~--~Ga~~l~vvDL~~---------~n~~~i~~i~~~~-~~pv~vgGGir~~~~~~~l-~Ga~~Vii  102 (260)
T 2agk_A           36 SQHPSSYYAKLYKD--RDVQGCHVIKLGP---------NNDDAAREALQES-PQFLQVGGGINDTNCLEWL-KWASKVIV  102 (260)
T ss_dssp             -CCCHHHHHHHHHH--TTCTTCEEEEESS---------SCHHHHHHHHHHS-TTTSEEESSCCTTTHHHHT-TTCSCEEE
T ss_pred             cCCCHHHHHHHHHH--cCCCEEEEEeCCC---------CCHHHHHHHHhcC-CceEEEeCCCCHHHHHHHh-cCCCEEEE
Confidence            34678888888876  4678777766664         2244566666654 5788999999977999999 99999999


Q ss_pred             cccccCC
Q 031554          130 GSSVFGA  136 (157)
Q Consensus       130 GSai~~~  136 (157)
                      ||+.++.
T Consensus       103 gs~a~~~  109 (260)
T 2agk_A          103 TSWLFTK  109 (260)
T ss_dssp             CGGGBCT
T ss_pred             CcHHHhh
Confidence            9999964

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=97.67  E-value=0.001  Score=56.64  Aligned_cols=96  Identities=19%  Similarity=0.166  Sum_probs=63.9

Q ss_pred             HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc-chhHHHHHHHHHhhC------CCC
Q 031554           32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRY------PSL  103 (157)
Q Consensus        32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-~~~~~~ki~~l~~~~------~~~  103 (157)
                      .+.++++|+. ++.+.+-.. .+ .+.++...+  .++|.|.+- -+.|.  |.. .+..++-+.++++..      .++
T Consensus       332 ~~~i~~lr~~~~~PvivKgv-~~-~e~A~~a~~--aGad~I~vs-~hgG~--~~d~~~~~~~~l~~v~~~v~~~~~~~~i  404 (511)
T 1kbi_A          332 WKDIEELKKKTKLPIVIKGV-QR-TEDVIKAAE--IGVSGVVLS-NHGGR--QLDFSRAPIEVLAETMPILEQRNLKDKL  404 (511)
T ss_dssp             HHHHHHHHHHCSSCEEEEEE-CS-HHHHHHHHH--TTCSEEEEC-CTTTT--SSTTCCCHHHHHHHHHHHHHTTTCBTTB
T ss_pred             HHHHHHHHHHhCCcEEEEeC-CC-HHHHHHHHH--cCCCEEEEc-CCCCc--cCCCCCchHHHHHHHHHHHHhhccCCCc
Confidence            3568888885 665555321 22 566666655  589999873 23332  211 123455555555432      479


Q ss_pred             cEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          104 DIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       104 ~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      +|.+||||+ ...+.+.+..|||.+-+|++++
T Consensus       405 pVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l  436 (511)
T 1kbi_A          405 EVFVDGGVRRGTDVLKALCLGAKGVGLGRPFL  436 (511)
T ss_dssp             EEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            999999999 6899998899999999999855

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=97.63  E-value=0.00024  Score=54.39  Aligned_cols=80  Identities=18%  Similarity=0.259  Sum_probs=58.4

Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .++.+.++.+.+  .++|.+.+......+.+   ....++.++++++. .++++.+.|||+ ++.+.++.++|||.+++|
T Consensus        30 ~d~~~~a~~~~~--~Gad~i~v~d~~~~~~~---~~~~~~~i~~i~~~-~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg  103 (253)
T 1thf_D           30 GDPVELGKFYSE--IGIDELVFLDITASVEK---RKTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSIN  103 (253)
T ss_dssp             TCHHHHHHHHHH--TTCCEEEEEESSCSSSH---HHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred             cCHHHHHHHHHH--cCCCEEEEECCchhhcC---CcccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence            345566666654  57899877643322222   23456677888775 479999999999 688999999999999999


Q ss_pred             ccccCCC
Q 031554          131 SSVFGAP  137 (157)
Q Consensus       131 Sai~~~~  137 (157)
                      ++.+..+
T Consensus       104 ~~~l~~p  110 (253)
T 1thf_D          104 TAAVENP  110 (253)
T ss_dssp             HHHHHCT
T ss_pred             hHHHhCh
Confidence            9988644

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=97.63  E-value=0.00018  Score=55.04  Aligned_cols=80  Identities=18%  Similarity=0.276  Sum_probs=58.8

Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .++.+.++.+.+  .++|.|.+.....++.+   ....++.++++++. .++++.+.|||+ .+.+.++.++|||.+++|
T Consensus        31 ~d~~~~a~~~~~--~Gad~i~v~d~~~~~~~---~~~~~~~i~~i~~~-~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg  104 (252)
T 1ka9_F           31 GDPVEAARAYDE--AGADELVFLDISATHEE---RAILLDVVARVAER-VFIPLTVGGGVRSLEDARKLLLSGADKVSVN  104 (252)
T ss_dssp             TCHHHHHHHHHH--HTCSCEEEEECCSSTTC---HHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEcCCccccC---ccccHHHHHHHHHh-CCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence            345666666654  47898877633322222   23456678888876 489999999999 799999999999999999


Q ss_pred             ccccCCC
Q 031554          131 SSVFGAP  137 (157)
Q Consensus       131 Sai~~~~  137 (157)
                      ++.+..+
T Consensus       105 ~~~l~~p  111 (252)
T 1ka9_F          105 SAAVRRP  111 (252)
T ss_dssp             HHHHHCT
T ss_pred             hHHHhCc
Confidence            9988644

>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1

Probab=97.63  E-value=0.00051  Score=53.50  Aligned_cols=126  Identities=21%  Similarity=0.289  Sum_probs=81.5

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh-------------HHhhHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE-------------VYPLVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~-------------~~~~~~~~~~   67 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  ..++.             ++..+   ..
T Consensus        81 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l---~~  154 (255)
T 1b9b_A           81 PLMLQEIGVEYVIVGHSERRRIFKED-DEFINRKVKAVLEKGMTPILCVG--ETLEEREKGLTFCVVEKQVREGF---YG  154 (255)
T ss_dssp             HHHHHTTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHHTCHHHHHHHHHHHHH---TT
T ss_pred             HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHH---hc
Confidence            368899999999997        343 23335668889999999887774  33332             12233   33


Q ss_pred             C------CeEEEEeeeC----CCCCcccchh----HHHHHHHH-HhhC-----CCCcEEEEcCCCHhhHHHHH-HcCCCE
Q 031554           68 V------EMVLVMTVEP----GFGGQKFMPE----MMDKVRSL-RNRY-----PSLDIEVDGGLGPSTIAEAA-SAGANC  126 (157)
Q Consensus        68 ~------d~vl~m~v~p----G~~gq~~~~~----~~~ki~~l-~~~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~  126 (157)
                      +      ..|+  .-+|    |++ ..-.|+    +...||+. ++++     .+++|.-.|+++++|+.++. ..++|+
T Consensus       155 ~~~~~~~~~vI--AYEPvWAIGTG-~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG  231 (255)
T 1b9b_A          155 LDKEEAKRVVI--AYEPVWAIGTG-RVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDG  231 (255)
T ss_dssp             CCHHHHTTCEE--EECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEESSCCHHHHTTTSSSTTCCE
T ss_pred             CCHHHcCCEEE--EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCcCCHHHHHHHHcCCCCCe
Confidence            3      2222  3466    544 443443    23334433 1122     24899999999999999876 889999


Q ss_pred             EEEcccccCCC--CHHHHH
Q 031554          127 IVAGSSVFGAP--EPAHVI  143 (157)
Q Consensus       127 vV~GSai~~~~--d~~~~~  143 (157)
                      +-+|++..+++  ++...+
T Consensus       232 ~LVGgASLka~~~~F~~ii  250 (255)
T 1b9b_A          232 GLVGGASLKESFIELARIM  250 (255)
T ss_dssp             EEESGGGTSTHHHHHHHHH
T ss_pred             eEeehHhhcCccccHHHHH
Confidence            99999999766  655443

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=97.62  E-value=0.00063  Score=57.08  Aligned_cols=114  Identities=19%  Similarity=0.253  Sum_probs=82.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ++....+.+.+++.|.|-+|.+   ++ .++++.+|+.   ++++.-++...+.+.. ..|    ..+|++|+-+ ..|.
T Consensus       315 ~~~~i~~~~~~~~ld~vQLHG~---E~-~~~~~~l~~~~p~~~~iika~~v~~~~~~-~~~----~~~d~~LlD~-~~GG  384 (452)
T 1pii_A          315 DIADVVDKAKVLSLAAVQLHGN---EE-QLYIDTLREALPAHVAIWKALSVGETLPA-REF----QHVDKYVLDN-GQGG  384 (452)
T ss_dssp             CHHHHHHHHHHHTCSEEEECSC---CC-HHHHHHHHHHSCTTSEEEEEEECSSSCCC-CCC----TTCCEEEEES-CSCC
T ss_pred             CHHHHHHHHHhcCCCEEEECCC---CC-HHHHHHHHhhccCCCcEEEEEecCCccch-hhh----hcccEEEecC-CCCC
Confidence            3556667778889999999985   33 4677777763   5677667766654322 122    2479999976 4588


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      +|+.|.-..+.      . ....++...||+|++|+.+.++.++.++=+-|.+=
T Consensus       385 tG~~fdW~~l~------~-~~~~p~iLAGGL~p~NV~~ai~~~p~gvDvsSGVE  431 (452)
T 1pii_A          385 SGQRFDWSLLN------G-QSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVE  431 (452)
T ss_dssp             SSCCCCGGGGT------T-SCCTTEEEESSCCTTTHHHHHTTCCSEEEECGGGE
T ss_pred             CCCccCHHHhh------c-ccCCcEEEEcCCCHHHHHHHHhcCCCEEEeCCcee
Confidence            89999765432      2 13568999999999999887779999998888874

>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A*

Probab=97.60  E-value=0.00095  Score=52.33  Aligned_cols=117  Identities=18%  Similarity=0.126  Sum_probs=69.0

Q ss_pred             CCCEEEEcccCCcchHHHHHHHHHHc---CCceE-EE-ecCCCCH------HhHHhhHhcC-CCCCeEEEEeeeCCCCCc
Q 031554           16 GASGFTFHVEISKDNWQELVQRIKSK---GMRPG-VA-LKPGTSV------EEVYPLVEGA-NPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus        16 gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~g-l~-l~~~t~~------~~~~~~~~~~-~~~d~vl~m~v~pG~~gq   83 (157)
                      ++|++|+|.-.....+..+.+.+++.   +..+- |+ ++....+      +.+.++...+ .++|.|+.    ++   +
T Consensus       115 ~ad~vTVH~~~G~~~~~aa~~~a~~~~~~~~~lllla~mss~~~l~~~~~~~~v~~~A~~a~~g~dGvV~----s~---~  187 (267)
T 3gdm_A          115 WADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIA----QR---D  187 (267)
T ss_dssp             HCSEEEEEGGGCTHHHHHHHHHHHHHCCSCCEEEEECSCCSTTCCCCHHHHHHHHHHHTTCTTTEEEEEC----SS---C
T ss_pred             hCCEEEEeccCCHHHHHHHHHHHHhhcccCCCeEEEEEcCCccccccCCHHHHHHHHHHHHhcCCCeEEe----Cc---c
Confidence            48999999876666657777777665   32221 21 2211111      2233333221 13444432    21   1


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCH-----------hhHHHHHHcCCCEEEEcccccC-CCCHHHHHHHHHHHH
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-----------STIAEAASAGANCIVAGSSVFG-APEPAHVISLMRKSV  150 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~-----------~~i~~~~~~Gad~vV~GSai~~-~~d~~~~~~~l~~~~  150 (157)
                        .+.        +...+++.+ +.=||++           .|-.+.+++|+|.+|+|+.|++ ++||.++++.+++..
T Consensus       188 --~~~--------~~~g~~f~~-vTPGIr~~~~g~~~gdQ~rTP~~Ai~~GaD~iVVGRpI~~~a~dP~~aa~~i~~~~  255 (267)
T 3gdm_A          188 --MGG--------RDEGYDWLI-MTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAG  255 (267)
T ss_dssp             --CCC--------GGGTCCCEE-EECSEECCCTTCTTGGGSEEHHHHHHTTCSEEEECGGGTSTTCCHHHHHHHHHHHH
T ss_pred             --chh--------hccCCCCEE-ECCCcCCCcCCCccccCCCCHHHHHHcCCCEEEEChhhccCCCCHHHHHHHHHHHH
Confidence              111        233455544 4555553           3677888999999999999999 999999999888754

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=97.59  E-value=7.5e-05  Score=74.50  Aligned_cols=126  Identities=21%  Similarity=0.370  Sum_probs=81.1

Q ss_pred             HHHHHHHHhCC--CCEEEEcccCCc--chHHHHHHHHHHcCCceEEEecCCCCHH--hHHhhHhc-CCCCCeEEEEeeeC
Q 031554            6 LDYVEPLGKAG--ASGFTFHVEISK--DNWQELVQRIKSKGMRPGVALKPGTSVE--EVYPLVEG-ANPVEMVLVMTVEP   78 (157)
Q Consensus         6 ~~~i~~~~~~g--ad~v~vh~e~~~--~~~~~~i~~ir~~g~~~gl~l~~~t~~~--~~~~~~~~-~~~~d~vl~m~v~p   78 (157)
                      +.+++.+.+.|  +|.|+++...++  +. .++++.++++|+++.... +.|.-+  .+.+.... ...++.|.+.+.+.
T Consensus       504 ~~~~~~~~~~g~~vdgv~~~aG~P~~ee~-~~~i~~l~~~Gi~~i~~~-~~t~~~a~~~~~i~~d~~~~~y~vv~~G~ea  581 (3089)
T 3zen_D          504 KRLVQRARQSGAPIDGLVVSAGIPDLEEA-VDIIDELNEVGISHVVFK-PGTVEQIRSVIRIAAEVPTKPVIVHIEGGRA  581 (3089)
T ss_dssp             HHHHHHHHHTTCSCCEEEEESSCCCHHHH-HHHHTSTTHHHHCSEEEC-CCSHHHHHHHHHHHTTSTTSCEEEEECCSSS
T ss_pred             HHHHHHHHHcCCCceEEEEeCCCCchhHh-HHHHHHHHHcCCEEEEEe-CCCHHHHHHHHHhhhhcCCCcEEEEEeCCCc
Confidence            46899999999  888999865442  23 578888888887654433 333221  23333210 01122566555554


Q ss_pred             CCCCcccchhHHHHH----HHHHhhCCCCcEEEEcCCC-HhhHHHHH-----------HcCCCEEEEcccccCC
Q 031554           79 GFGGQKFMPEMMDKV----RSLRNRYPSLDIEVDGGLG-PSTIAEAA-----------SAGANCIVAGSSVFGA  136 (157)
Q Consensus        79 G~~gq~~~~~~~~ki----~~l~~~~~~~~I~vdGGI~-~~~i~~~~-----------~~Gad~vV~GSai~~~  136 (157)
                      |  |..........+    .++++. .+++|.+.|||. .+.+....           ..|||++++||++...
T Consensus       582 G--GH~g~~~~~~ll~~~~~~ir~~-~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t  652 (3089)
T 3zen_D          582 G--GHHSWEDLDDLLLATYSELRSR-SNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMAT  652 (3089)
T ss_dssp             S--EECCSCCHHHHHHHHHHHHTTC-TTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTC
T ss_pred             C--CCCCcccHHHHHHHHHHHHhhc-CCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhC
Confidence            3  332222333444    555554 479999999997 69999888           9999999999998754

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=97.53  E-value=0.0017  Score=51.41  Aligned_cols=119  Identities=10%  Similarity=0.047  Sum_probs=84.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEecC--------CCCHHhHHhhH
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALKP--------GTSVEEVYPLV   62 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~~--------~t~~~~~~~~~   62 (157)
                      .+.++.+.++|++.|.+-.-+.+               +.+.+.++++|++|..+-..+..        .++.+.+.++.
T Consensus        86 ~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~  165 (302)
T 2ftp_A           86 LKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVA  165 (302)
T ss_dssp             HHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHH
T ss_pred             HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence            35788999999999997543322               11267889999999988654421        25666666655


Q ss_pred             h---cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEE
Q 031554           63 E---GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        63 ~---~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~  129 (157)
                      +   - .++|.|.+-...    |........+.++++++..|+++|.+    |-|....|....+++||+.|=+
T Consensus       166 ~~~~~-~G~d~i~l~DT~----G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~  234 (302)
T 2ftp_A          166 RELQQ-MGCYEVSLGDTI----GVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDS  234 (302)
T ss_dssp             HHHHH-TTCSEEEEEESS----SCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHH-cCCCEEEEeCCC----CCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEe
Confidence            4   2 478988775333    44445567788999998876666654    7788899999999999998743

>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}

Probab=97.48  E-value=0.0012  Score=51.55  Aligned_cols=145  Identities=10%  Similarity=0.117  Sum_probs=100.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      ..+++.+.+..++.||+-.|..++              .+..+++.+++.|+++.|++.|+..  .++.-.+  -+.|+|
T Consensus       105 ~emi~ial~~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDpd~~--qI~aA~~--~GAd~I  180 (278)
T 3gk0_A          105 PEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDPDEA--QIRAAHE--TGAPVI  180 (278)
T ss_dssp             HHHHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECSCHH--HHHHHHH--HTCSEE
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHH--hCcCEE
Confidence            458899999999999999876431              2477899999999999999976533  2322222  389999


Q ss_pred             EEEeeeCCC-CCcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCC---CCHHHHHH
Q 031554           72 LVMTVEPGF-GGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA---PEPAHVIS  144 (157)
Q Consensus        72 l~m~v~pG~-~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~---~d~~~~~~  144 (157)
                      -+.|-.-.- ....-...-++++.+..+.  ..++.+.+.-|+|-+|++.+.+ -+..-+-+|-+|+..   --..++++
T Consensus       181 ELhTG~YA~a~~~~~~~~el~rl~~aA~~A~~lGL~VnAGHGL~y~Nv~~ia~ip~i~ElnIGHaiIa~Al~~Gl~~AVr  260 (278)
T 3gk0_A          181 ELHTGRYADAHDAAEQQREFERIATGVDAGIALGLKVNAGHGLHYTNVQAIAALPGIAELNIGHAIVAHAVFVGWDNAVR  260 (278)
T ss_dssp             EECCHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEEECTTCCTTTHHHHHTCTTEEEEEECHHHHHHHHHHCHHHHHH
T ss_pred             EEecchhhccCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCCeEEecCHHHHHHHHHHhHHHHHH
Confidence            886542111 1111122355566655542  2579999999999999998754 355678889776632   24678999


Q ss_pred             HHHHHHHHHh
Q 031554          145 LMRKSVEDAQ  154 (157)
Q Consensus       145 ~l~~~~~~~~  154 (157)
                      ++++.++++|
T Consensus       261 ~mk~lm~~ar  270 (278)
T 3gk0_A          261 EMKAIMVAAR  270 (278)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888765

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=97.46  E-value=0.00044  Score=59.35  Aligned_cols=80  Identities=11%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH------------hhHHHHH
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------------STIAEAA  120 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~------------~~i~~~~  120 (157)
                      +|++.++.|.+  .++|.+.+.-+.....+..-.+..++.|+++++.. .++|.++|||+.            +++..+.
T Consensus       281 dp~~~A~~~~~--~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~-~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l  357 (555)
T 1jvn_A          281 KPVQLAQKYYQ--QGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYF  357 (555)
T ss_dssp             HHHHHHHHHHH--TTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred             CHHHHHHHHHH--cCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC-CCcEEEeCccccchhcccccchHHHHHHHHH
Confidence            46677777765  57899988877754444333344677788887764 789999999995            5699999


Q ss_pred             HcCCCEEEEcccccC
Q 031554          121 SAGANCIVAGSSVFG  135 (157)
Q Consensus       121 ~~Gad~vV~GSai~~  135 (157)
                      ++|||.+++||+.+.
T Consensus       358 ~aGad~V~igt~~~~  372 (555)
T 1jvn_A          358 RSGADKVSIGTDAVY  372 (555)
T ss_dssp             HHTCSEEEECHHHHH
T ss_pred             HcCCCEEEECCHHhh
Confidence            999999999998775

>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*

Probab=97.46  E-value=0.0037  Score=48.55  Aligned_cols=130  Identities=19%  Similarity=0.252  Sum_probs=82.5

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH---------HhhHhc-CCCC--
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV---------YPLVEG-ANPV--   68 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~---------~~~~~~-~~~~--   68 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++++.++|+.+.+=+.  .+++..         ...++. +..+  
T Consensus        81 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~  157 (251)
T 2vxn_A           81 MPILKDIGVHWVILGHSERRTYYGET-DEIVAQKVSEACKQGFMVIACIG--ETLQQREANQTAKVVLSQTSAIAAKLTK  157 (251)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCCEEEECchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence            368899999999997        343 33446788889999998887774  333222         222210 0233  


Q ss_pred             ---CeEEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEc
Q 031554           69 ---EMVLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAG  130 (157)
Q Consensus        69 ---d~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~G  130 (157)
                         .- ++..-+|    |++ ..-.|+ .-+-.+.+|+    .+     .+++|.-.|+++++|+.++ ...++|++-+|
T Consensus       158 ~~~~~-~vIAYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVG  235 (251)
T 2vxn_A          158 DAWNQ-VVLAYEPVWAIGTG-KVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVG  235 (251)
T ss_dssp             GGGGG-EEEEECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCCTTTHHHHHTSTTCCEEEES
T ss_pred             HHhCC-EEEEECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHhcCCCCCeeeec
Confidence               11 2224466    544 443443 2222333342    22     2488999999999999875 57899999999


Q ss_pred             ccccCCCCHHHHHH
Q 031554          131 SSVFGAPEPAHVIS  144 (157)
Q Consensus       131 Sai~~~~d~~~~~~  144 (157)
                      ++..+ +++..-++
T Consensus       236 gAsL~-~~F~~Ii~  248 (251)
T 2vxn_A          236 GASLK-PEFRDIID  248 (251)
T ss_dssp             GGGGS-TTHHHHHH
T ss_pred             HHHHH-HHHHHHHH
Confidence            99998 88766543

>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*

Probab=97.46  E-value=0.0018  Score=51.81  Aligned_cols=49  Identities=18%  Similarity=0.422  Sum_probs=39.8

Q ss_pred             CCCcEEEEcCCCHh-----------hHHHHH-HcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          101 PSLDIEVDGGLGPS-----------TIAEAA-SAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       101 ~~~~I~vdGGI~~~-----------~i~~~~-~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      +++ +.+.-||++.           |-.+.+ ++|+|.+|+|+.|++++||.++++.+++..
T Consensus       242 ~df-l~vTPGIrp~~~~~~~g~qv~TP~~Ai~~~GaD~iVVGRpIt~A~dP~~aa~~i~~~~  302 (312)
T 3g3d_A          242 PEF-LHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAA  302 (312)
T ss_dssp             TTS-EEEECSBCSSSEECTTSCEEBCHHHHHHTTCCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred             CCe-EEEcCCcCCCcCCCCcCCcccCHHHHHHhCCCCEEEEChhhcCCCCHHHHHHHHHHHH
Confidence            455 4577788753           466777 899999999999999999999999888753

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=97.45  E-value=0.0054  Score=50.07  Aligned_cols=114  Identities=24%  Similarity=0.350  Sum_probs=76.4

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      +...++++|. .-.+|.....+...+.++.+|+.+ ..+++.+... ...+.++.+++  .++|.|.+-+.+ |     .
T Consensus        62 lA~avA~aGG-lg~i~~~~s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lie--aGvd~I~idta~-G-----~  132 (366)
T 4fo4_A           62 LAIALAQEGG-IGFIHKNMSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVE--AGVDVLLIDSSH-G-----H  132 (366)
T ss_dssp             HHHHHHHTTC-EEEECSSSCHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHH--TTCSEEEEECSC-T-----T
T ss_pred             HHHHHHHcCC-ceEeecCCCHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHh--CCCCEEEEeCCC-C-----C
Confidence            4445566666 344555433333356677777753 5567766432 33566777766  589988663221 2     2


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      .+..++.|+++++.++++++.+....+.+.+..+.++|||.+++|
T Consensus       133 ~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG  177 (366)
T 4fo4_A          133 SEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVG  177 (366)
T ss_dssp             SHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             CHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEe
Confidence            346677899999988888877755778999999999999999995

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=97.41  E-value=0.00062  Score=51.75  Aligned_cols=76  Identities=14%  Similarity=0.384  Sum_probs=57.8

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      ++.+.++.+.+  .++|++.+...+..+.+..   .. +.++++++.. ++++.+.|||+ ++.+..+.++|||.+++|+
T Consensus        32 d~~~~a~~~~~--~Gad~i~v~~~d~~~~~~~---~~-~~i~~i~~~~-~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~  104 (244)
T 2y88_A           32 SAVDAALGWQR--DGAEWIHLVDLDAAFGRGS---NH-ELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVGT  104 (244)
T ss_dssp             EHHHHHHHHHH--TTCSEEEEEEHHHHTTSCC---CH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CHHHHHHHHHH--cCCCEEEEEcCcccccCCC---hH-HHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEECc
Confidence            56677776665  5799998876554443322   22 5677777764 78999999999 6889999999999999999


Q ss_pred             cccC
Q 031554          132 SVFG  135 (157)
Q Consensus       132 ai~~  135 (157)
                      +.+.
T Consensus       105 ~~l~  108 (244)
T 2y88_A          105 AALE  108 (244)
T ss_dssp             HHHH
T ss_pred             hHhh
Confidence            8775

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=97.41  E-value=0.0019  Score=53.63  Aligned_cols=131  Identities=15%  Similarity=0.220  Sum_probs=81.5

Q ss_pred             HHHHhCCCCEEEEcccC---------C--------------cc---hHHHHHHHHHHc-------CCceEEEecCC----
Q 031554           10 EPLGKAGASGFTFHVEI---------S--------------KD---NWQELVQRIKSK-------GMRPGVALKPG----   52 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---------~--------------~~---~~~~~i~~ir~~-------g~~~gl~l~~~----   52 (157)
                      +.+.++|+|.|-+|.-.         +              ++   .+.++++++|+.       .+.+|+=++|.    
T Consensus       177 ~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~  256 (419)
T 3l5a_A          177 LRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRG  256 (419)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEET
T ss_pred             HHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccccccC
Confidence            44578999999999642         1              11   125677777764       34678878773    


Q ss_pred             ----CCHHhHHhhHhc--C-CCCCeEEEEeeeCCC----CCcccch--hHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHH
Q 031554           53 ----TSVEEVYPLVEG--A-NPVEMVLVMTVEPGF----GGQKFMP--EMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIA  117 (157)
Q Consensus        53 ----t~~~~~~~~~~~--~-~~~d~vl~m~v~pG~----~gq~~~~--~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~  117 (157)
                          ...+...++++.  - .++|+|-+..-  ++    ..+.+.+  .....++.+|+... +++|.+-|||+ ++.+.
T Consensus       257 ~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g--~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae  334 (419)
T 3l5a_A          257 SDLGYTIDEFNQLIDWVMDVSNIQYLAIASW--GRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESAL  334 (419)
T ss_dssp             TEEEECHHHHHHHHHHHHHHSCCCCEEECCT--TCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhhcCCcEEEEeeC--CccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHH
Confidence                233333322221  1 36999877532  11    0111111  11234455565543 58999999985 89999


Q ss_pred             HHHHcCCCEEEEcccccCCCCHHHHH
Q 031554          118 EAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       118 ~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      ++++. ||.|.+|++++..||+...+
T Consensus       335 ~~L~~-aDlVaiGR~~IanPdlv~ki  359 (419)
T 3l5a_A          335 DALQH-ADMVGMSSPFVTEPDFVHKL  359 (419)
T ss_dssp             HHGGG-CSEEEESTHHHHCTTHHHHH
T ss_pred             HHHHh-CCcHHHHHHHHHCcHHHHHH
Confidence            99999 99999999988878865443

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.37  E-value=0.0022  Score=56.00  Aligned_cols=130  Identities=12%  Similarity=0.064  Sum_probs=83.3

Q ss_pred             HHHHhCCCCEEEEcccCCc--------------------c------hHHHHHHHHHHc-C--CceEEEecCCCC------
Q 031554           10 EPLGKAGASGFTFHVEISK--------------------D------NWQELVQRIKSK-G--MRPGVALKPGTS------   54 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~~~--------------------~------~~~~~i~~ir~~-g--~~~gl~l~~~t~------   54 (157)
                      ..+.++|+|.|-+|.-..-                    .      .+.++++++|+. |  ..+++=+++...      
T Consensus       163 ~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~  242 (690)
T 3k30_A          163 RRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGIT  242 (690)
T ss_dssp             HHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCC
T ss_pred             HHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCC
Confidence            3456789999999853211                    0      225788888886 4  457777877643      


Q ss_pred             HHhHHhhHhc-CCCCCeEEEEeee-------CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-C
Q 031554           55 VEEVYPLVEG-ANPVEMVLVMTVE-------PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-A  124 (157)
Q Consensus        55 ~~~~~~~~~~-~~~~d~vl~m~v~-------pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-a  124 (157)
                      .+...++.+. -..+|++-+-...       |.+..+.+   .++.++++|+.. ++++.+-|||+ ++.+.++++.| |
T Consensus       243 ~~~~~~~~~~l~~~~d~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~-~~pvi~~G~i~~~~~a~~~l~~g~~  318 (690)
T 3k30_A          243 REDIEGVLRELGELPDLWDFAMGSWEGDSVTSRFAPEGR---QEEFVAGLKKLT-TKPVVGVGRFTSPDAMVRQIKAGIL  318 (690)
T ss_dssp             HHHHHHHHHHHTTSSSEEEEECSCHHHHTCCTTTCCTTT---THHHHTTSGGGC-SSCEEECSCCCCHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHhhcCEEEEecccccccCCCCccCCccc---cHHHHHHHHHHc-CCeEEEeCCCCCHHHHHHHHHCCCc
Confidence            2332222221 1457887654311       11111111   234556666654 78899999997 89999988888 9


Q ss_pred             CEEEEcccccCCCCHHHHH
Q 031554          125 NCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       125 d~vV~GSai~~~~d~~~~~  143 (157)
                      |.|.+|++++..||+-..+
T Consensus       319 d~v~~gR~~~~~P~~~~~~  337 (690)
T 3k30_A          319 DLIGAARPSIADPFLPNKI  337 (690)
T ss_dssp             SEEEESHHHHHCTTHHHHH
T ss_pred             ceEEEcHHhHhCccHHHHH
Confidence            9999999998878865443

>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1

Probab=97.37  E-value=0.0032  Score=49.45  Aligned_cols=131  Identities=14%  Similarity=0.144  Sum_probs=82.8

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH---------HhhHhc-CCCCC-
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV---------YPLVEG-ANPVE-   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~---------~~~~~~-~~~~d-   69 (157)
                      .+++.++|+++|.+.        .|. ++.+.+-++.+.++|+.+.+=+.  .+.+..         ...++. +..++ 
T Consensus        99 ~~mLkd~G~~~ViiGHSERR~~f~Et-de~V~~Kv~~Al~~GL~pI~CvG--EtleeReag~t~~vv~~Ql~~~l~~~~~  175 (275)
T 1mo0_A           99 PAMIKDLGLEWVILGHSERRHVFGES-DALIAEKTVHALEAGIKVVFCIG--EKLEEREAGHTKDVNFRQLQAIVDKGVS  175 (275)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHcCCCEEEeCchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhCCChHHHHHHHHHHHHhhhhh
Confidence            368899999999997        343 33446788888999999888774  333222         222210 02221 


Q ss_pred             --eEEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554           70 --MVLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS  132 (157)
Q Consensus        70 --~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa  132 (157)
                        -+ ++.-+|    |++ ..-.|+ .-+-.+.+|+    .+     .+++|.-.|+++++|+.++ ...++|++-+|++
T Consensus       176 ~~~v-vIAYEPvWAIGTG-ktAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~diDG~LVGgA  253 (275)
T 1mo0_A          176 WENI-VIAYEPVWAIGTG-KTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGA  253 (275)
T ss_dssp             STTE-EEEECCGGGTTTS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCCTTTHHHHTTSTTCCEEEESGG
T ss_pred             hcCE-EEEECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhhChhhcCcccEEEcCCCCHhhHHHHhcCCCCCeeEechH
Confidence              11 223466    544 443443 2223333442    22     2488999999999999875 6789999999999


Q ss_pred             ccCCCCHHHHHH
Q 031554          133 VFGAPEPAHVIS  144 (157)
Q Consensus       133 i~~~~d~~~~~~  144 (157)
                      ..+++++.+.++
T Consensus       254 SLka~~F~~Ii~  265 (275)
T 1mo0_A          254 SLKPDFVKIINA  265 (275)
T ss_dssp             GGSTHHHHHHHH
T ss_pred             HhChHHHHHHHH
Confidence            998777665543

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=97.37  E-value=0.00056  Score=51.14  Aligned_cols=91  Identities=13%  Similarity=0.257  Sum_probs=62.8

Q ss_pred             HHHHHHHHHcCCceEEEecCCC--CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSKGMRPGVALKPGT--SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                      ...++.+|+.|+.+..-+-.=+  .++...++++. ..+|++-+|   ||.     .|..   |+++++. .+++|.+.|
T Consensus        91 ~~~i~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~-~~PD~iEiL---PGi-----~p~i---I~~i~~~-~~~PiIaGG  157 (192)
T 3kts_A           91 GNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQK-VQPDCIELL---PGI-----IPEQ---VQKMTQK-LHIPVIAGG  157 (192)
T ss_dssp             HHHHHHHHHTTCEEEEEEECCSHHHHHHHHHHHHH-HCCSEEEEE---CTT-----CHHH---HHHHHHH-HCCCEEEES
T ss_pred             HHHHHHHHHCCCeEEEEEEEEEcchHHHHHHHHhh-cCCCEEEEC---Cch-----hHHH---HHHHHHh-cCCCEEEEC
Confidence            3667778888877654321112  22334444443 478999998   872     3444   4555554 378999999


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEccc-ccC
Q 031554          110 GLG-PSTIAEAASAGANCIVAGSS-VFG  135 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GSa-i~~  135 (157)
                      +|+ .+.+....++||+.++.|+. +++
T Consensus       158 lI~~~edv~~al~aGA~aVsTs~~~LW~  185 (192)
T 3kts_A          158 LIETSEQVNQVIASGAIAVTTSNKHLWE  185 (192)
T ss_dssp             SCCSHHHHHHHHTTTEEEEEECCGGGGT
T ss_pred             CcCCHHHHHHHHHcCCeEEEeCCHHHhC
Confidence            999 79999999999999999974 665

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=97.36  E-value=0.00071  Score=51.51  Aligned_cols=76  Identities=16%  Similarity=0.365  Sum_probs=56.9

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      ++.+.++.+.+  .++|++.+...+..+.+..   .. +.++++++.. ++++.+.|||+ ++.+..+.++|||.+++|+
T Consensus        33 d~~~~a~~~~~--~Gad~i~v~~~d~~~~~~~---~~-~~i~~i~~~~-~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~  105 (244)
T 1vzw_A           33 SPLEAALAWQR--SGAEWLHLVDLDAAFGTGD---NR-ALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGT  105 (244)
T ss_dssp             CHHHHHHHHHH--TTCSEEEEEEHHHHHTSCC---CH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CHHHHHHHHHH--cCCCEEEEecCchhhcCCC---hH-HHHHHHHHhc-CCcEEEECCcCCHHHHHHHHHcCCCEEEECc
Confidence            56666776665  5899998865443333322   22 5677777764 78999999999 6889999999999999999


Q ss_pred             cccC
Q 031554          132 SVFG  135 (157)
Q Consensus       132 ai~~  135 (157)
                      ..+.
T Consensus       106 ~~l~  109 (244)
T 1vzw_A          106 AALE  109 (244)
T ss_dssp             HHHH
T ss_pred             hHhh
Confidence            8775

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=97.36  E-value=0.0012  Score=54.32  Aligned_cols=97  Identities=14%  Similarity=0.202  Sum_probs=64.9

Q ss_pred             HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-ccchhHHHHHHHHHhhC-CCCcEEEE
Q 031554           32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRSLRNRY-PSLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-~~~~~~~~ki~~l~~~~-~~~~I~vd  108 (157)
                      .+.++++|+. +..+.+-..  ...+.++.+.+  .++|.|.+- -+.|  .| ...+..++-+.++++.. .+++|.+|
T Consensus       241 ~~~i~~lr~~~~~PvivKgv--~~~e~A~~a~~--aGad~I~vs-~~gg--r~~~~g~~~~~~l~~v~~av~~~ipVia~  313 (392)
T 2nzl_A          241 WEDIKWLRRLTSLPIVAKGI--LRGDDAREAVK--HGLNGILVS-NHGA--RQLDGVPATIDVLPEIVEAVEGKVEVFLD  313 (392)
T ss_dssp             HHHHHHHC--CCSCEEEEEE--CCHHHHHHHHH--TTCCEEEEC-CGGG--TSSTTCCCHHHHHHHHHHHHTTSSEEEEC
T ss_pred             HHHHHHHHHhhCCCEEEEec--CCHHHHHHHHH--cCCCEEEeC-CCCC--CcCCCCcChHHHHHHHHHHcCCCCEEEEE
Confidence            4568888875 545544221  34666666665  589999873 1222  12 12344666677776643 36999999


Q ss_pred             cCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554          109 GGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus       109 GGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      |||+ .+.+.+.+..|||.+-+|++++.
T Consensus       314 GGI~~g~Dv~kalalGAd~V~iGr~~l~  341 (392)
T 2nzl_A          314 GGVRKGTDVLKALALGAKAVFVGRPIVW  341 (392)
T ss_dssp             SSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             CCCCCHHHHHHHHHhCCCeeEECHHHHH
Confidence            9999 69999999999999999998653

>3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum, 5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE NUP; 1.47A {Plasmodium falciparum} SCOP: c.1.2.3 PDB: 2qaf_A* 3bar_A* 2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A 3vi2_A*

Probab=97.34  E-value=0.00049  Score=55.75  Aligned_cols=61  Identities=16%  Similarity=0.279  Sum_probs=41.8

Q ss_pred             HHHHHhhCCCCcEEEEcCCC--HhhHHHH------HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           93 VRSLRNRYPSLDIEVDGGLG--PSTIAEA------ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        93 i~~l~~~~~~~~I~vdGGI~--~~~i~~~------~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      ++.+|+..+++.+.+ =||.  ..+.+++      .+.|+|.+|+|+.|.+++||.++++.+++.++...
T Consensus       268 ~~~iR~~~p~~~iLt-PGIGAQggDq~rv~tp~~a~~~g~~~ivVGR~I~~A~dP~~Aa~~i~~ei~~~l  336 (342)
T 3n3m_A          268 MNYIRTYFPNCYILS-PGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAIL  336 (342)
T ss_dssp             HHHHHHHSTTCCEEE-CCSSTTCCCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEe-CCCCcCCCCHHHHHhhhhhhhcCceEEEcChhhhcCCCHHHHHHHHHHHHHHHH
Confidence            455556556665533 2232  2344332      22589999999999999999999999988887654

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=97.34  E-value=0.0056  Score=49.39  Aligned_cols=138  Identities=16%  Similarity=0.221  Sum_probs=85.4

Q ss_pred             hCCCCEEEEcccCCc-----------chHHHHHHHHHHc-CCceEEEecCCCCHHhH----HhhHhcCCCCCeEEEEe--
Q 031554           14 KAGASGFTFHVEISK-----------DNWQELVQRIKSK-GMRPGVALKPGTSVEEV----YPLVEGANPVEMVLVMT--   75 (157)
Q Consensus        14 ~~gad~v~vh~e~~~-----------~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~----~~~~~~~~~~d~vl~m~--   75 (157)
                      ..++|++.+..-++.           +.+.++++.+++. ...+.+-+.|.......    ....+. ...+.+....  
T Consensus       153 ~~~ad~ielNiScPn~~g~~~l~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~-~~~~~i~~i~t~  231 (354)
T 3tjx_A          153 TEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEF-PKVQFITCINSI  231 (354)
T ss_dssp             HHHCCEEEEECC---------CTTSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTC-TTEEEEEECCCE
T ss_pred             hcCCCEEEeeeCCCCCcchhhhccCHHHHHHHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhh-cccchhheeccc
Confidence            348999888643221           2225667777765 44556678777754322    222211 2333333221  


Q ss_pred             -----eeC--------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc-cc
Q 031554           76 -----VEP--------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS-VF  134 (157)
Q Consensus        76 -----v~p--------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa-i~  134 (157)
                           ++.              |.+|....+..++-++++++..++++|...|||. .+++.+.+.+|||.|=+||+ +|
T Consensus       232 ~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y  311 (354)
T 3tjx_A          232 GNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQE  311 (354)
T ss_dssp             EEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHH
T ss_pred             ccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhh
Confidence                 110              1234444556677788888887889999999998 79999999999999999998 56


Q ss_pred             CCCCH-HHHHHHHHHHHHH
Q 031554          135 GAPEP-AHVISLMRKSVED  152 (157)
Q Consensus       135 ~~~d~-~~~~~~l~~~~~~  152 (157)
                      +.+.. .+-.+.|++.+++
T Consensus       312 ~GP~~~~~I~~~L~~~L~~  330 (354)
T 3tjx_A          312 EGPSIFERLTSELLGVMAK  330 (354)
T ss_dssp             HCTTHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHH
Confidence            65554 3444556665543

>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*

Probab=97.33  E-value=0.003  Score=48.57  Aligned_cols=144  Identities=10%  Similarity=0.133  Sum_probs=100.4

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEE
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVL   72 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl   72 (157)
                      .+++.+.+..++.||+-.|..++              .+..+++.+++.|+++.+++.|+.  +.++.-.+  -+.|+|-
T Consensus        78 emi~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd~--~qi~aA~~--~GA~~IE  153 (243)
T 1m5w_A           78 EMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADE--EQIKAAAE--VGAPFIE  153 (243)
T ss_dssp             HHHHHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSCH--HHHHHHHH--TTCSEEE
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHH--hCcCEEE
Confidence            58899999999999999885431              237789999999999999997553  33333333  4899998


Q ss_pred             EEeeeCCCC-CcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCC---CCHHHHHHH
Q 031554           73 VMTVEPGFG-GQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA---PEPAHVISL  145 (157)
Q Consensus        73 ~m~v~pG~~-gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~---~d~~~~~~~  145 (157)
                      +.|-.-.-. +......-++++.+..+.  ..++.+.+.-|+|-+|+..+.. -+..-+-+|-+|...   --..+++++
T Consensus       154 LhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgL~y~Nv~~ia~ip~i~ElnIGHaiia~Al~~Gl~~aV~~  233 (243)
T 1m5w_A          154 IHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKDAVAE  233 (243)
T ss_dssp             EECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHHTCTTEEEEEECHHHHHHHHHHCHHHHHHH
T ss_pred             EechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHhhCCCCeEEccCHHHHHHHHHHhHHHHHHH
Confidence            875432111 111112345566555443  2579999999999999999864 355678889766632   246788999


Q ss_pred             HHHHHHHHh
Q 031554          146 MRKSVEDAQ  154 (157)
Q Consensus       146 l~~~~~~~~  154 (157)
                      +++.++.+|
T Consensus       234 m~~~~~~~r  242 (243)
T 1m5w_A          234 MKRLMLEAR  242 (243)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999886654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.33  E-value=0.0024  Score=56.19  Aligned_cols=130  Identities=14%  Similarity=0.146  Sum_probs=82.7

Q ss_pred             HHHhCCCCEEEEcccC---------C------cc----------hHHHHHHHHHHc---CCceEEEecCCC-------C-
Q 031554           11 PLGKAGASGFTFHVEI---------S------KD----------NWQELVQRIKSK---GMRPGVALKPGT-------S-   54 (157)
Q Consensus        11 ~~~~~gad~v~vh~e~---------~------~~----------~~~~~i~~ir~~---g~~~gl~l~~~t-------~-   54 (157)
                      .+.++|+|.|-+|.-.         +      |+          .+.++++++|+.   ...+++=++|..       . 
T Consensus       157 ~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~  236 (729)
T 1o94_A          157 RSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA  236 (729)
T ss_dssp             HHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCT
T ss_pred             HHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCc
Confidence            4467899999999643         1      10          137788888885   345677676521       1 


Q ss_pred             HH---hHHhhHhcCCCCCeEEEEeee----CCC-CCcccchh--HHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC
Q 031554           55 VE---EVYPLVEGANPVEMVLVMTVE----PGF-GGQKFMPE--MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG  123 (157)
Q Consensus        55 ~~---~~~~~~~~~~~~d~vl~m~v~----pG~-~gq~~~~~--~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G  123 (157)
                      .+   .+.+.++  ..+|++-+-...    .+. ..+.+.+.  .++.++++|+.. +++|.+-|||+ ++.+.++++.|
T Consensus       237 ~~~~~~~~~~l~--~~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~pvi~~G~i~~~~~a~~~l~~g  313 (729)
T 1o94_A          237 EVDGQKFVEMAD--SLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS-KKPVLGVGRYTDPEKMIEIVTKG  313 (729)
T ss_dssp             TTHHHHHHHHHG--GGCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC-SSCEECCSCCCCHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHH--hhcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHC-CCEEEEeCCCCCHHHHHHHHHCC
Confidence            21   2333442  347877554321    000 11111111  255667777764 78999999995 89999999988


Q ss_pred             -CCEEEEcccccCCCCHHHHH
Q 031554          124 -ANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       124 -ad~vV~GSai~~~~d~~~~~  143 (157)
                       ||.|.+|++++..|++-..+
T Consensus       314 ~aD~V~~gR~~l~~P~~~~~~  334 (729)
T 1o94_A          314 YADIIGCARPSIADPFLPQKV  334 (729)
T ss_dssp             SCSBEEESHHHHHCTTHHHHH
T ss_pred             CCCEEEeCchhhcCchHHHHH
Confidence             99999999998878765443

>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}

Probab=97.30  E-value=0.0086  Score=46.94  Aligned_cols=127  Identities=19%  Similarity=0.240  Sum_probs=79.3

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCC-
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVE-   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d-   69 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  .+++         .+...++. +..++ 
T Consensus       103 ~~mLkd~G~~~ViiGHSERR~~f~Et-de~v~~Kv~~Al~~GL~pIlCVG--Etleere~g~t~~vv~~Ql~~~l~~v~~  179 (271)
T 3krs_A          103 CEMLKDMDVDCSLVGHSERRQYYSET-DQIVNNKVKKGLENGLKIVLCIG--ESLSERETGKTNDVIQKQLTEALKDVSD  179 (271)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCeEEEEeC--CcHHHHHCCCHHHHHHHHHHHHHhchHh
Confidence            368899999999996        343 33346668889999999888774  3332         12222210 02221 


Q ss_pred             --eEEEEeeeC----CCCCcccchhHHHH-HHHHHhh----C-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554           70 --MVLVMTVEP----GFGGQKFMPEMMDK-VRSLRNR----Y-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS  132 (157)
Q Consensus        70 --~vl~m~v~p----G~~gq~~~~~~~~k-i~~l~~~----~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa  132 (157)
                        -+ +..-+|    |+ |..-.|+..+. .+.+|+.    +     .+++|...|+++++|+.++ ...++|++-+|++
T Consensus       180 ~~~~-vIAYEPvWAIGT-G~tAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~diDG~LVGgA  257 (271)
T 3krs_A          180 LSNL-VIAYEPIWAIGT-GVVATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSVTPDNCNELIKCADIDGFLVGGA  257 (271)
T ss_dssp             CTTE-EEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHCCEEECSCCCTTTHHHHHHSTTCCEEEESGG
T ss_pred             hcCE-EEEECChhhhcC-CCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHHHHHhcCCCCCEEEeeHH
Confidence              11 223466    43 44444443322 3333332    2     3589999999999999876 5689999999999


Q ss_pred             ccCCCCHHH
Q 031554          133 VFGAPEPAH  141 (157)
Q Consensus       133 i~~~~d~~~  141 (157)
                      -.+ ++..+
T Consensus       258 SL~-~~F~~  265 (271)
T 3krs_A          258 SLK-PTFAK  265 (271)
T ss_dssp             GGS-TTHHH
T ss_pred             hhh-HHHHH
Confidence            887 45443

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=97.29  E-value=0.00034  Score=53.35  Aligned_cols=82  Identities=18%  Similarity=0.234  Sum_probs=58.9

Q ss_pred             CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554           51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA  129 (157)
Q Consensus        51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~  129 (157)
                      +.++.+.++.+.+  .++|.+.+......+.+   ....++.+++++ . .++++.+.|||+ .+.+.++.++|||.+++
T Consensus        29 ~~~~~~~a~~~~~--~Gad~i~v~d~~~~~~~---~~~~~~~i~~i~-~-~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~l  101 (241)
T 1qo2_A           29 EKDPVELVEKLIE--EGFTLIHVVDLSNAIEN---SGENLPVLEKLS-E-FAEHIQIGGGIRSLDYAEKLRKLGYRRQIV  101 (241)
T ss_dssp             SSCHHHHHHHHHH--TTCCCEEEEEHHHHHHC---CCTTHHHHHHGG-G-GGGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred             CcCHHHHHHHHHH--cCCCEEEEecccccccC---CchhHHHHHHHH-h-cCCcEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence            4567777777765  57888887432221111   123466777777 4 478999999999 68999999999999999


Q ss_pred             cccccCCCCH
Q 031554          130 GSSVFGAPEP  139 (157)
Q Consensus       130 GSai~~~~d~  139 (157)
                      |++.+..++.
T Consensus       102 g~~~l~~p~~  111 (241)
T 1qo2_A          102 SSKVLEDPSF  111 (241)
T ss_dssp             CHHHHHCTTH
T ss_pred             CchHhhChHH
Confidence            9998876653

>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS}

Probab=97.29  E-value=0.0015  Score=52.20  Aligned_cols=137  Identities=15%  Similarity=0.169  Sum_probs=83.4

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCH-H---------------hHHhhHhc
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSV-E---------------EVYPLVEG   64 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~-~---------------~~~~~~~~   64 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.-.... +               .++..++.
T Consensus       133 a~mLkd~G~~~ViiGHSERR~~f~Et-de~V~~Kv~aAl~~GL~pIvCVGEtleere~~~~~~g~t~~vv~~Ql~~~l~~  211 (310)
T 3s6d_A          133 PVCLRDMNVSIVELGHAERRAIFGET-DQQVARKAAAAADQGLIPLVCIGEVSTLGPIVSEAIGRAVGECEAQIRPVLEA  211 (310)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHHCCC-HHHHHHHHHHHHHTTCEEEEEECCCSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEecccccccccCCC-HHHHHHHHHHHHHCCCEEEEEeCCcHHHhhhhccccccHHHHHHHHHHHHHhc
Confidence            368899999999996        354 3333667788899999988877522211 1               12222210


Q ss_pred             CCCCCeEEEEeeeC----CCCCcccchhHH-HHHHHHHhh--------CCCCcEEEEcCCCHhhHHH--HHHcCCCEEEE
Q 031554           65 ANPVEMVLVMTVEP----GFGGQKFMPEMM-DKVRSLRNR--------YPSLDIEVDGGLGPSTIAE--AASAGANCIVA  129 (157)
Q Consensus        65 ~~~~d~vl~m~v~p----G~~gq~~~~~~~-~ki~~l~~~--------~~~~~I~vdGGI~~~~i~~--~~~~Gad~vV~  129 (157)
                      .+.-.- ++..-+|    |+ |+.-.++.. +-.+.||+.        ..+++|...|+++++|+.+  + ..++|++-+
T Consensus       212 l~~~~~-vVIAYEPVWAIGT-Gk~Atpe~aqevh~~IR~~l~~~~~~~a~~vrILYGGSV~~~n~~~~~l-~~dVDG~LV  288 (310)
T 3s6d_A          212 LPRDAP-VIFAYEPVWAIGK-PQPARVDHVGAVVSGIRSVIERIDRHRKGEVRILYGGSAGPGLWGPGGL-GKEVDGMFL  288 (310)
T ss_dssp             SCTTSC-EEEEECCGGGC------CCHHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEECTTTTTTTSG-GGTCSEEEE
T ss_pred             CCcccc-eEEEECChhhccC-CCCCCHHHHHHHHHHHHHHHHHhhhcccCceeEEEcCccCHHHHhhhcc-cCCCCEEEe
Confidence            011111 2234466    43 444444322 223333332        2358999999999999988  5 589999999


Q ss_pred             cccccCCCCHHHHHHHHHHH
Q 031554          130 GSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus       130 GSai~~~~d~~~~~~~l~~~  149 (157)
                      |++-.+.+++.+-++.+.+.
T Consensus       289 GgASL~a~~F~~Ii~e~~~~  308 (310)
T 3s6d_A          289 GRFAHDIEGVRKVVREVEES  308 (310)
T ss_dssp             CGGGGSHHHHHHHHHHHHHH
T ss_pred             eheeecHHHHHHHHHHHHHH
Confidence            99999877777776666544

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=97.28  E-value=0.008  Score=48.88  Aligned_cols=113  Identities=19%  Similarity=0.363  Sum_probs=74.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      ++...+++.|.-. .+|.....+...+.++.+|+.+ ..+|+.+...+ .+.++.+++  .++|+|.+-   .+.+   .
T Consensus        60 ~lA~avA~~GGlg-ii~~~~s~e~~~~~I~~vk~~~~~pvga~ig~~~-~e~a~~l~e--aGad~I~ld---~a~G---~  129 (361)
T 3khj_A           60 LMAVGMARLGGIG-IIHKNMDMESQVNEVLKVKNSGGLRVGAAIGVNE-IERAKLLVE--AGVDVIVLD---SAHG---H  129 (361)
T ss_dssp             HHHHHHHHTTCEE-EECSSSCHHHHHHHHHHHHHTTCCCCEEEECTTC-HHHHHHHHH--TTCSEEEEC---CSCC---S
T ss_pred             HHHHHHHHcCCCe-EEecCCCHHHHHHHHHHHHhccCceEEEEeCCCH-HHHHHHHHH--cCcCeEEEe---CCCC---C
Confidence            3444455555432 3344332333356677777765 45688876555 777777776  589988653   2221   1


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      ....++.++++++.. +.++.+.+..+.+.+..+.++|||.+++|
T Consensus       130 ~~~~~~~i~~i~~~~-~~~Vivg~v~t~e~A~~l~~aGaD~I~VG  173 (361)
T 3khj_A          130 SLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGADGIKVG  173 (361)
T ss_dssp             BHHHHHHHHHHHHHC-CCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             cHHHHHHHHHHHHhc-CCcEEEccCCCHHHHHHHHHcCcCEEEEe
Confidence            245567788888876 78887766678999999999999999996

>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A

Probab=97.26  E-value=0.0037  Score=48.65  Aligned_cols=127  Identities=15%  Similarity=0.173  Sum_probs=78.5

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh-------------HHhhHhcC--
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE-------------VYPLVEGA--   65 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~-------------~~~~~~~~--   65 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  .+++.             ++..++..  
T Consensus        82 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pIlCvG--Etleere~g~t~~vv~~Ql~~~l~~~~~  158 (255)
T 3qst_A           82 VPMIKSFGIEWTILGHSERRDILKED-DEFLAAKAKFALENGMKIIYCCG--EHLSEREAGKASEFVSAQIEKMIPAIPA  158 (255)
T ss_dssp             HHHHHTTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHcCCCEEEECchhhhhhcCCC-HHHHHHHHHHHHHCCCeEEEEcC--CcHHHHHcCCHHHHHHHHHHHHHccCCH
Confidence            368899999999996        343 33336668889999999888774  33321             22333100  


Q ss_pred             CCCCeEEEEeeeC----CCCCcccchhHHHH-HHHHHhh---------CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEc
Q 031554           66 NPVEMVLVMTVEP----GFGGQKFMPEMMDK-VRSLRNR---------YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAG  130 (157)
Q Consensus        66 ~~~d~vl~m~v~p----G~~gq~~~~~~~~k-i~~l~~~---------~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~G  130 (157)
                      ....-+ +..-+|    |+ |..-.|+..+. .+.+|+.         ..+++|...|+++++|+.++ ...++|++-+|
T Consensus       159 ~~~~~~-vIAYEPvWAIGT-G~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVG  236 (255)
T 3qst_A          159 GKWDDV-VIAYEPIWAIGT-GKVASTQDAQEMCKVIRDILAAKVGADIANKVRILYGGSVKPNNCNELAACPDVDGFLVG  236 (255)
T ss_dssp             TCGGGE-EEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCCTTTHHHHHHSTTCCEEEEC
T ss_pred             HHhCCE-EEEECCHHHhcC-CCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCcCHhHHHHHhcCCCCCEEEee
Confidence            011112 224466    54 44444443222 2333332         13589999999999999875 56899999999


Q ss_pred             ccccCCCCHHH
Q 031554          131 SSVFGAPEPAH  141 (157)
Q Consensus       131 Sai~~~~d~~~  141 (157)
                      ++-.+ ++..+
T Consensus       237 gASL~-~~F~~  246 (255)
T 3qst_A          237 GASLE-AGFIN  246 (255)
T ss_dssp             GGGGS-TTHHH
T ss_pred             HHHhh-HHHHH
Confidence            98876 45433

>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}

Probab=97.26  E-value=0.0018  Score=50.49  Aligned_cols=130  Identities=17%  Similarity=0.233  Sum_probs=83.0

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------h----HHhhHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------E----VYPLVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~----~~~~~~~~~~   67 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  .+.+         .    ++..++....
T Consensus        79 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pIvCvG--Etleere~g~t~~vv~~Ql~~~l~~~~~  155 (259)
T 2i9e_A           79 PAMIKDVGADWVILGHSERRQIFGES-DELIAEKVCHALESGLKVIACIG--ETLEEREAGKTEEVVFRQTKAIAAKVND  155 (259)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHcCCCEEEECchhhhhhcCCC-HHHHHHHHHHHHHCCCeEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence            368899999999997        343 33447888889999999887774  3332         1    2223310011


Q ss_pred             -CCeEEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcc
Q 031554           68 -VEMVLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGS  131 (157)
Q Consensus        68 -~d~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GS  131 (157)
                       -..|  +.-+|    |++ ..-.|+ .-+-.+.+|+    ++     .+++|...|+++++|+.++ ...++|++-+|+
T Consensus       156 ~~~~v--IAYEPvWAIGTG-~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGg  232 (259)
T 2i9e_A          156 WSNVV--IAYEPVWAIGTG-KTATPQQAQDVHKALRQWICENIDAKVGNSIRIQYGGSVTAANCKELASQPDIDGFLVGG  232 (259)
T ss_dssp             CTTEE--EEECCGGGTTSS-SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESG
T ss_pred             hcCEE--EEEcCHHHcCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHhhHHHHhcCCCCCeeeech
Confidence             1222  23466    544 444443 2223333342    22     2478999999999999875 568999999999


Q ss_pred             cccCCCCHHHHHH
Q 031554          132 SVFGAPEPAHVIS  144 (157)
Q Consensus       132 ai~~~~d~~~~~~  144 (157)
                      +..+++++...++
T Consensus       233 AsL~a~~F~~Ii~  245 (259)
T 2i9e_A          233 ASLKPEFVDIINA  245 (259)
T ss_dssp             GGGSTHHHHHHTT
T ss_pred             HhhChHHHHHHHH
Confidence            9998777665543

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=97.24  E-value=0.0006  Score=52.55  Aligned_cols=76  Identities=21%  Similarity=0.186  Sum_probs=54.9

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      ++.+.++.+.+  .++|.+.+......+.++.   ..++.++++++. .++++.+.|||+ .+.+..+.++|||.+++|+
T Consensus        31 ~~~~~a~~~~~--~Ga~~i~v~d~~~~~~~~g---~~~~~i~~i~~~-~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~  104 (266)
T 2w6r_A           31 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSG---YDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADKALAAS  104 (266)
T ss_dssp             EHHHHHHHHHH--HTCSEEEEEETTTSSCSSC---CCHHHHHHHGGG-CCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred             CHHHHHHHHHH--CCCCEEEEEecCcccCCCc---ccHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence            45666666665  4789888843322122222   245677777776 378999999999 5889999999999999999


Q ss_pred             ccc
Q 031554          132 SVF  134 (157)
Q Consensus       132 ai~  134 (157)
                      +.+
T Consensus       105 ~~~  107 (266)
T 2w6r_A          105 VFH  107 (266)
T ss_dssp             CC-
T ss_pred             HHH
Confidence            988

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=97.21  E-value=0.0035  Score=51.29  Aligned_cols=95  Identities=12%  Similarity=0.136  Sum_probs=64.6

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchh-HHHHHHHHHhhCCCCcEEEEcC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE-MMDKVRSLRNRYPSLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~-~~~ki~~l~~~~~~~~I~vdGG  110 (157)
                      .+.++.+++.|..+++.+.+....+..+.+.+  .++|.+.+-. .+.... .+.+. .+..|+++++.. ++++.+.|.
T Consensus       145 ~~~i~~~~~~g~~v~~~v~~~~~~e~a~~~~~--agad~i~i~~-~~~~~~-~~~~~~~~~~i~~l~~~~-~~pvi~ggi  219 (393)
T 2qr6_A          145 SERIAQVRDSGEIVAVRVSPQNVREIAPIVIK--AGADLLVIQG-TLISAE-HVNTGGEALNLKEFIGSL-DVPVIAGGV  219 (393)
T ss_dssp             HHHHHHHHHTTSCCEEEECTTTHHHHHHHHHH--TTCSEEEEEC-SSCCSS-CCCC-----CHHHHHHHC-SSCEEEECC
T ss_pred             HHHHHHHhhcCCeEEEEeCCccHHHHHHHHHH--CCCCEEEEeC-Cccccc-cCCCcccHHHHHHHHHhc-CCCEEECCc
Confidence            66788888889998888887655555555543  4788886531 221010 11111 455577777774 788888777


Q ss_pred             CCHhhHHHHHHcCCCEEEEcc
Q 031554          111 LGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GS  131 (157)
                      .+.+.+..+.++|||.+++|+
T Consensus       220 ~t~e~a~~~~~~Gad~i~vg~  240 (393)
T 2qr6_A          220 NDYTTALHMMRTGAVGIIVGG  240 (393)
T ss_dssp             CSHHHHHHHHTTTCSEEEESC
T ss_pred             CCHHHHHHHHHcCCCEEEECC
Confidence            789999999999999999986

>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...

Probab=97.21  E-value=0.0033  Score=48.76  Aligned_cols=128  Identities=18%  Similarity=0.197  Sum_probs=80.0

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHH---------hhHhc-CCCCC-
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY---------PLVEG-ANPVE-   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~---------~~~~~-~~~~d-   69 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  .+.+..+         ..++. +..++ 
T Consensus        80 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~  156 (248)
T 1r2r_A           80 PGMIKDCGATWVVLGHSERRHVFGES-DELIGQKVAHALSEGLGVIACIG--EKLDEREAGITEKVVFEQTKVIADNVKD  156 (248)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHcCCCEEEECChhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhCCChHHHHHHHHHHHHhhhhh
Confidence            368899999999996        343 33346688888999998887774  3333222         21110 02111 


Q ss_pred             --eEEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554           70 --MVLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS  132 (157)
Q Consensus        70 --~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa  132 (157)
                        - ++..-+|    |++ ..-.|+ .-+-.+.+|+    .+     .+++|.-.|+++++|+.++ ...++|++-+|++
T Consensus       157 ~~~-~vIAYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgA  234 (248)
T 1r2r_A          157 WSK-VVLAYEPVWAIGTG-KTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGA  234 (248)
T ss_dssp             GGG-EEEEECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTTCCEEEESGG
T ss_pred             hhc-eEEEEecHHhhCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHHcCCCCCeeEechH
Confidence              1 1223466    544 443443 2222333342    22     2478999999999999875 5789999999999


Q ss_pred             ccCCCCHHH
Q 031554          133 VFGAPEPAH  141 (157)
Q Consensus       133 i~~~~d~~~  141 (157)
                      ..+++++.+
T Consensus       235 sL~a~~F~~  243 (248)
T 1r2r_A          235 SLKPEFVDI  243 (248)
T ss_dssp             GGSTHHHHH
T ss_pred             HhChHHHHH
Confidence            997766544

>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}

Probab=97.15  E-value=0.015  Score=45.44  Aligned_cols=141  Identities=13%  Similarity=0.188  Sum_probs=84.2

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      +|......+.++|||.||+|......-| .+-+..+|+. ..+.=+.++|....-.+  .++  -+++.|.+.   |-..
T Consensus        54 Dpv~aA~~ae~aGAdGITvHlReDrRHI~d~Dv~~L~~~i~t~lNlEma~t~emi~i--al~--~kP~~vtLV---PEkr  126 (278)
T 3gk0_A           54 DPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRPRVKTRMNLECAVTPEMLDI--ACE--IRPHDACLV---PEKR  126 (278)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSCEEEEECSSHHHHHH--HHH--HCCSEEEEC---CCSG
T ss_pred             CHHHHHHHHHHcCCCEEEeccCCCcccCCHHHHHHHHHHcCCCEEeecCCCHHHHHH--HHH--cCCCEEEEC---CCCC
Confidence            6777888889999999999976533211 3445555554 66777778765444332  222  268999775   4322


Q ss_pred             Cccc----------chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc-CCCC---HHHHHHHHH
Q 031554           82 GQKF----------MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF-GAPE---PAHVISLMR  147 (157)
Q Consensus        82 gq~~----------~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~-~~~d---~~~~~~~l~  147 (157)
                      .+..          ....-+-|+++++..-.+.+-+|  -.++.+....+.|||.|=+=+.=| ++.+   ..+.++.+.
T Consensus       127 eE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFID--pd~~qI~aA~~~GAd~IELhTG~YA~a~~~~~~~~el~rl~  204 (278)
T 3gk0_A          127 SELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFID--PDEAQIRAAHETGAPVIELHTGRYADAHDAAEQQREFERIA  204 (278)
T ss_dssp             GGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHHHHTCSEEEECCHHHHTCSSHHHHHHHHHHHH
T ss_pred             CCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEecchhhccCCchhHHHHHHHHH
Confidence            1111          11223346666666544567777  567889999999999988833222 1223   334444555


Q ss_pred             HHHHHH
Q 031554          148 KSVEDA  153 (157)
Q Consensus       148 ~~~~~~  153 (157)
                      +..+.+
T Consensus       205 ~aA~~A  210 (278)
T 3gk0_A          205 TGVDAG  210 (278)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}

Probab=97.13  E-value=0.017  Score=44.59  Aligned_cols=130  Identities=21%  Similarity=0.254  Sum_probs=80.7

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCCe
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVEM   70 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d~   70 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++++.++|+.+.+=+.  ..++         .+...++. +..++-
T Consensus        74 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleereag~t~~vv~~Ql~~~l~~~~~  150 (244)
T 2v5b_A           74 LASLKDYGISWVVLGHSERRLYYGET-NEIVAEKVAQACAAGFHVIVCVG--ETNEEREAGRTAAVVLTQLAAVAQKLSK  150 (244)
T ss_dssp             HHHHHHTTCCEEEECCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCCEEEeCchhhhhccCCC-HHHHHHHHHHHHHCCCeEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhcCCH
Confidence            789999999999997        343 33336668888999998887774  3332         22222210 033321


Q ss_pred             ----EEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEEcc
Q 031554           71 ----VLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVAGS  131 (157)
Q Consensus        71 ----vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~GS  131 (157)
                          =++..-+|    |++ ..-.|+ .-+-.+.+|+    ++     .+++|.-.|+++++|+.++. ...+|++-+|+
T Consensus       151 ~~~~~~vIAYEPvWAIGTG-~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGg  229 (244)
T 2v5b_A          151 EAWSRVVIAYEPVWAIGTG-KVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGG  229 (244)
T ss_dssp             GGGGGEEEEECCHHHHSSS-CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCCHHHHHHHHTSTTCCEEEESG
T ss_pred             HHcCCEEEEECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCCCHhHHHHHhcCCCCCeeeech
Confidence                02224577    654 333443 2222333333    11     24789999999999999875 45799999999


Q ss_pred             cccCCCCHHHHH
Q 031554          132 SVFGAPEPAHVI  143 (157)
Q Consensus       132 ai~~~~d~~~~~  143 (157)
                      +-.+ ++...-+
T Consensus       230 ASL~-~~F~~Ii  240 (244)
T 2v5b_A          230 ASLK-PEFVEII  240 (244)
T ss_dssp             GGSS-TTHHHHH
T ss_pred             HHHH-HHHHHHH
Confidence            8777 7655443

>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*

Probab=97.11  E-value=0.0042  Score=48.09  Aligned_cols=129  Identities=22%  Similarity=0.279  Sum_probs=79.9

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HHh----hHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VYP----LVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~~----~~~~~~~   67 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++++.++|+.+.+=+.  ...+.         +..    .+.....
T Consensus        79 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~  155 (247)
T 1ney_A           79 VDQIKDVGAKYVILGHSERRSYFHED-DKFIADKTKFALGQGVGVILCIG--ETLEEKKAGKTLDVVERQLNAVLEEVKD  155 (247)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTTCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCEEEECChhhccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHHCCCHHHHHHHHHHHHHhchhh
Confidence            368899999999997        343 33346688888999998887774  33321         111    2210011


Q ss_pred             CCeEEEEeeeC----CCCCcccchhH-HHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554           68 VEMVLVMTVEP----GFGGQKFMPEM-MDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS  132 (157)
Q Consensus        68 ~d~vl~m~v~p----G~~gq~~~~~~-~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa  132 (157)
                      ..-+ +..-+|    |++ ..-.|+. -+-.+.+|+    ++     .+++|.-.|+++++|+.++ ...++|++-+|++
T Consensus       156 ~~~~-vIAYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgA  233 (247)
T 1ney_A          156 FTNV-VVAYEPVXAIGTG-LAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGA  233 (247)
T ss_dssp             CTTE-EEEECCGGGTTTS-CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCCTTTGGGGTTCTTCCEEEESGG
T ss_pred             hcCE-EEEECChhhcCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCCcCHhHHHHHHcCCCCCeeEeehH
Confidence            1111 223466    544 4444432 222333333    11     2478999999999999765 6789999999999


Q ss_pred             ccCCCCHHHHH
Q 031554          133 VFGAPEPAHVI  143 (157)
Q Consensus       133 i~~~~d~~~~~  143 (157)
                      ..+ +++..-+
T Consensus       234 sL~-~~F~~Ii  243 (247)
T 1ney_A          234 SLK-PEFVDII  243 (247)
T ss_dssp             GGS-THHHHHH
T ss_pred             HHH-HHHHHHH
Confidence            988 7765443

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=97.11  E-value=0.0019  Score=48.68  Aligned_cols=79  Identities=16%  Similarity=0.260  Sum_probs=56.9

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      ++.+.++.+.+  .++|.+.+......+   ...+..++.++++++.. ++++.+.||++ ++++.++.++|||.+.+|+
T Consensus        34 ~~~~~a~~~~~--~G~d~i~v~~~~~~~---~~~~~~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~  107 (253)
T 1h5y_A           34 DPVEMAVRYEE--EGADEIAILDITAAP---EGRATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNT  107 (253)
T ss_dssp             CHHHHHHHHHH--TTCSCEEEEECCCCT---TTHHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             cHHHHHHHHHH--cCCCEEEEEeCCccc---cCCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence            45566666654  578888775332211   22334566788888774 78999999998 6899999999999999999


Q ss_pred             cccCCC
Q 031554          132 SVFGAP  137 (157)
Q Consensus       132 ai~~~~  137 (157)
                      ..+..+
T Consensus       108 ~~~~~~  113 (253)
T 1h5y_A          108 AAVRNP  113 (253)
T ss_dssp             HHHHCT
T ss_pred             HHhhCc
Confidence            877543

>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=97.10  E-value=0.041  Score=39.50  Aligned_cols=108  Identities=15%  Similarity=0.155  Sum_probs=69.4

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~  112 (157)
                      +-..++.+|.++- .+....|.+.+.+.... ..+|.|.+-+...     ...+...+-++.+++.. ++++|.+.|.+.
T Consensus        38 va~~l~~~G~eVi-~lG~~~p~e~lv~aa~~-~~~diV~lS~~~~-----~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~  110 (161)
T 2yxb_A           38 VARALRDAGFEVV-YTGLRQTPEQVAMAAVQ-EDVDVIGVSILNG-----AHLHLMKRLMAKLRELGADDIPVVLGGTIP  110 (161)
T ss_dssp             HHHHHHHTTCEEE-CCCSBCCHHHHHHHHHH-TTCSEEEEEESSS-----CHHHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred             HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHh-cCCCEEEEEeech-----hhHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence            3344677787753 34456777765554443 5899888754432     12344555567777765 479999999888


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      .+....+.+.|+|.+...     ..++.+.+..+++.++..
T Consensus       111 ~~~~~~l~~~G~d~v~~~-----~~~~~~~~~~~~~~~~~~  146 (161)
T 2yxb_A          111 IPDLEPLRSLGIREIFLP-----GTSLGEIIEKVRKLAEEK  146 (161)
T ss_dssp             HHHHHHHHHTTCCEEECT-----TCCHHHHHHHHHHHHHHH
T ss_pred             hhcHHHHHHCCCcEEECC-----CCCHHHHHHHHHHHHHHh
Confidence            888888899999975421     124556666666665543

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=97.10  E-value=0.01  Score=47.73  Aligned_cols=115  Identities=22%  Similarity=0.255  Sum_probs=85.4

Q ss_pred             HHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEecC-----CCCHHh----HHhhHh
Q 031554            8 YVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALKP-----GTSVEE----VYPLVE   63 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~~-----~t~~~~----~~~~~~   63 (157)
                      .++.+.++|+|.|++-.-+.+               +.+.+.++++|++|.++.+.+..     .++.+.    ++.+.+
T Consensus       101 ~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (337)
T 3ble_A          101 TVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSK  180 (337)
T ss_dssp             HHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHT
T ss_pred             hHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHH
Confidence            688899999999999865543               12367788899999998877642     223443    333333


Q ss_pred             cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                        .++|.|.+    +.+.|-....+..+.++.+++..|+.+|.+    |.|.-..|.-..+++||+.|=
T Consensus       181 --~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa~~vd  243 (337)
T 3ble_A          181 --EHIERIFL----PDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLH  243 (337)
T ss_dssp             --SCCSEEEE----ECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTCSEEE
T ss_pred             --cCCCEEEE----ecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCCCEEE
Confidence              47888876    455666666677888999999887888887    489998999888999999874

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=97.08  E-value=0.0079  Score=47.27  Aligned_cols=117  Identities=13%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             HHHHHHHhCCCCEEEEcccCC----------------cchHHHHHHHHHHcCCceEEEec--------CCCCHHhHHhhH
Q 031554            7 DYVEPLGKAGASGFTFHVEIS----------------KDNWQELVQRIKSKGMRPGVALK--------PGTSVEEVYPLV   62 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~g~~~gl~l~--------~~t~~~~~~~~~   62 (157)
                      .-++.+.++|++.|.+-.-..                ... .+.++++|++|..+...+.        ..++.+.+.++.
T Consensus        83 ~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~-~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~  161 (295)
T 1ydn_A           83 KGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERL-SPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVT  161 (295)
T ss_dssp             HHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHH-HHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHH-HHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHH
Confidence            467889999999998874332                112 5568899999999874433        135666655555


Q ss_pred             h---cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEE
Q 031554           63 E---GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        63 ~---~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~  129 (157)
                      +   - .++|.|.+-.    +.|........+.++.+++..++.++.+    |-|....|....+++|++.|=+
T Consensus       162 ~~~~~-~G~d~i~l~D----t~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd~  230 (295)
T 1ydn_A          162 EQLFS-LGCHEVSLGD----TIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDA  230 (295)
T ss_dssp             HHHHH-HTCSEEEEEE----TTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHh-cCCCEEEecC----CCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEEEe
Confidence            3   2 3789887752    3344445567778999998876555554    6788889999999999998754

>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1

Probab=97.08  E-value=0.0036  Score=48.86  Aligned_cols=129  Identities=17%  Similarity=0.274  Sum_probs=80.9

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHH---------hhHhc-CCCC--
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY---------PLVEG-ANPV--   68 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~---------~~~~~-~~~~--   68 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  .+.+..+         ..++. +..+  
T Consensus        87 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~  163 (261)
T 1m6j_A           87 VGMLVDCQVPYVILGHSERRQIFHES-NEQVAEKVKVAIDAGLKVIACIG--ETEAQRIANQTEEVVAAQLKAINNAISK  163 (261)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHHTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHcCCCEEEECchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence            368899999999997        343 33446788888899999887774  3333222         11110 0111  


Q ss_pred             ----CeEEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEE
Q 031554           69 ----EMVLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVA  129 (157)
Q Consensus        69 ----d~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~  129 (157)
                          ..|+  .-+|    |++ ..-.|+ .-+-.+.+|+    .+     .+++|...|+++++|+.++ ...++|++-+
T Consensus       164 ~~~~~~vI--AYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV  240 (261)
T 1m6j_A          164 EAWKNIIL--AYEPVWAIGTG-KTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLV  240 (261)
T ss_dssp             GGGGGEEE--EECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCCTTTHHHHHTSTTCCEEEE
T ss_pred             HHcCCEEE--EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCCcCHhhHHHHhcCCCCCeeEe
Confidence                2222  4466    544 444443 2223333342    22     2488999999999999875 5689999999


Q ss_pred             cccccCCCCHHHHH
Q 031554          130 GSSVFGAPEPAHVI  143 (157)
Q Consensus       130 GSai~~~~d~~~~~  143 (157)
                      |++..+++++...+
T Consensus       241 GgAsL~a~~F~~ii  254 (261)
T 1m6j_A          241 GGASLDAAKFKTII  254 (261)
T ss_dssp             SGGGGSHHHHHHHH
T ss_pred             cHHHhChHHHHHHH
Confidence            99998766655443

>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis}

Probab=97.07  E-value=0.02  Score=44.92  Aligned_cols=124  Identities=17%  Similarity=0.201  Sum_probs=78.0

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCC-
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVE-   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d-   69 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  ..++         .+...++. +..++ 
T Consensus       105 a~MLkd~G~~~VIiGHSERR~~fgEt-de~V~~K~~~Al~~GL~pIlCVG--EtleeReag~t~~vv~~Ql~~~l~~~~~  181 (272)
T 4g1k_A          105 AGMVAEFGAAYAIVGHSERRAYHGES-NETVAAKARRALAAGLTPIVCVG--ETLAEREAGTTEQVVGAQLDAVLAVLSP  181 (272)
T ss_dssp             HHHHHTTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHcCCCEEEECchhcccccCCC-HHHHHHHHHHHHHCCCeEEEEeC--CCHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence            368899999999997        343 33336666889999999888774  2222         22222220 13332 


Q ss_pred             -----eEEEEeeeC----CCCCcccchh-HHHHHHHHHhh-----CCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccc
Q 031554           70 -----MVLVMTVEP----GFGGQKFMPE-MMDKVRSLRNR-----YPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSV  133 (157)
Q Consensus        70 -----~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~~-----~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai  133 (157)
                           .|+  .=+|    |+ |+.-.++ .-+-.+.||+.     ..+++|.-.|+++++|+.++... .+|++-+|++-
T Consensus       182 ~~~~~vVI--AYEPVWAIGT-G~tAt~e~aqevh~~IR~~l~~~~a~~~rIlYGGSV~~~N~~el~~~~dIDG~LVGgAS  258 (272)
T 4g1k_A          182 DEAARIVV--AYEPVWAIGT-GKSATAEQAQQVHAFLRGRLAAKGAGHVSLLYGGSVKADNAAELFGQPDIDGGLIGGAS  258 (272)
T ss_dssp             HHHTTCEE--EECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCTTSCEEECSCCCTTTHHHHHTSTTCCEEEECGGG
T ss_pred             HHcCCEEE--EECcHhhccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCceEEEcCCcCHhHHHHHhcCCCCCEEEechHh
Confidence                 232  3366    54 4444443 32233334432     24689999999999999998654 89999999987


Q ss_pred             cCCCC
Q 031554          134 FGAPE  138 (157)
Q Consensus       134 ~~~~d  138 (157)
                      .+.++
T Consensus       259 L~~~~  263 (272)
T 4g1k_A          259 LKSGD  263 (272)
T ss_dssp             GSHHH
T ss_pred             cCHHH
Confidence            75333

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=97.05  E-value=0.014  Score=49.88  Aligned_cols=116  Identities=15%  Similarity=0.263  Sum_probs=84.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEec----CCCCHHh----HHhhHhcCCCCCeEEEEee
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALK----PGTSVEE----VYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~----~~t~~~~----~~~~~~~~~~~d~vl~m~v   76 (157)
                      ..+++.+.++|+|.|++-.-..+ ..+.+.++++|++|..+...++    +.++.+.    ++.+.+  .++|.|.+   
T Consensus       120 ~~~ve~a~~aGvd~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~--~Gad~I~L---  194 (539)
T 1rqb_A          120 DRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLD--MGADSIAL---  194 (539)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHH--TTCSEEEE---
T ss_pred             HHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHH--cCCCEEEe---
Confidence            56789999999999998744333 2337899999999999865553    2334443    344443  47887766   


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCC-CCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                       +.+.|-.......+.++.+++..+ +++|.+    |.|....|.-..+++|||.|
T Consensus       195 -~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAGa~~V  249 (539)
T 1rqb_A          195 -KDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVV  249 (539)
T ss_dssp             -EETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEE
T ss_pred             -CCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhCCCEE
Confidence             445565556667778888888765 677765    68999999999999999977

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=97.05  E-value=0.0054  Score=48.40  Aligned_cols=120  Identities=14%  Similarity=0.062  Sum_probs=83.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEecC--------CCCHHhHHhhH
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALKP--------GTSVEEVYPLV   62 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~~--------~t~~~~~~~~~   62 (157)
                      .+-++.+.++|+|.|++-.-..+.               .+.+.++++|++|.++.+.+.-        .++.+.+.++.
T Consensus        83 ~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~  162 (298)
T 2cw6_A           83 LKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVT  162 (298)
T ss_dssp             HHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHH
T ss_pred             HHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence            346889999999999997654432               2256789999999998765431        23555444443


Q ss_pred             hc--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEE
Q 031554           63 EG--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        63 ~~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~  129 (157)
                      +.  -.++|.|.+-    .+.|.....+..+.++.+++..++.+|.+    |-|.-..|.-..+++||+.|=.
T Consensus       163 ~~~~~~Ga~~i~l~----DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd~  231 (298)
T 2cw6_A          163 KKFYSMGCYEISLG----DTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDS  231 (298)
T ss_dssp             HHHHHTTCSEEEEE----ETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHcCCCEEEec----CCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEe
Confidence            21  1478888763    44455556667778999998877766665    6788888888888999998743

>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*

Probab=97.03  E-value=0.016  Score=44.52  Aligned_cols=120  Identities=18%  Similarity=0.228  Sum_probs=75.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHH-cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKS-KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~-~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      +|......+.++|||.||+|......-| .+-+..+|+ ...+.=+.++|....-.+.  ++  -+++.|.+.   |-..
T Consensus        26 dpv~aA~~ae~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~emi~ia--~~--~kP~~vtLV---PE~r   98 (243)
T 1m5w_A           26 DPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIA--VE--TKPHFCCLV---PEKR   98 (243)
T ss_dssp             CHHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSEEEEEECSSHHHHHHH--HH--HCCSEEEEC---CCCS
T ss_pred             CHHHHHHHHHHcCCCEEEeCCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHHHH--HH--cCCCEEEEC---CCCC
Confidence            5777788888999999999976433211 344555555 3567777777655443322  22  268999775   4332


Q ss_pred             Ccccc----------hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           82 GQKFM----------PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        82 gq~~~----------~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      .+...          ...-+-++++++..-.+.+-+|  -.++.+....+.|||.|=+=+.
T Consensus        99 ~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFID--pd~~qi~aA~~~GA~~IELhTG  157 (243)
T 1m5w_A           99 QEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFID--ADEEQIKAAAEVGAPFIEIHTG  157 (243)
T ss_dssp             SCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHHHTTCSEEEEECH
T ss_pred             CCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEech
Confidence            22221          1122335666665444556676  5679999999999999876554

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.01  E-value=0.02  Score=48.58  Aligned_cols=119  Identities=19%  Similarity=0.237  Sum_probs=83.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCc----chHHHHHHHHHH--------cCCceEEEecCC-CCHHhHHhhHhcCCCCCe
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISK----DNWQELVQRIKS--------KGMRPGVALKPG-TSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~----~~~~~~i~~ir~--------~g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~   70 (157)
                      ++.+.++.+.+.+.+.+.|--|...    -+..++++.+..        ....++.++... +..+.++.+++  .++|.
T Consensus       194 ~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLve--aGvd~  271 (511)
T 3usb_A          194 TLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVK--ASVDA  271 (511)
T ss_dssp             CHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHH--TTCSE
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHh--hccce
Confidence            3466677778888887777643221    022566666554        123467777644 34566777776  58999


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      |.+-+.+|.      ....++.|+++++.+++.++.+.+-.+.+.+..+.++|||.+++|
T Consensus       272 I~Id~a~g~------~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg  325 (511)
T 3usb_A          272 IVLDTAHGH------SQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVG  325 (511)
T ss_dssp             EEEECSCTT------SHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             EEecccccc------hhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEEC
Confidence            988766542      345778899999998888887666667899999999999999985

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=97.00  E-value=0.0016  Score=48.52  Aligned_cols=88  Identities=19%  Similarity=0.226  Sum_probs=59.7

Q ss_pred             HHHHHHHHHcCCceEEEecCCC--CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSKGMRPGVALKPGT--SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                      ...++.+|+.|+.+..-+-.-+  .++...+.++. .++|.+-+|   ||-    ..|..++++       .+.++.+.|
T Consensus        92 ~~~i~~Akk~GL~tIqR~FliDs~al~~~~~~I~~-~kPD~iEiL---Pg~----v~p~~I~~v-------~~~PiIaGG  156 (188)
T 1vkf_A           92 PKNYVVAKKNGIPAVLRFFALDSKAVERGIEQIET-LGVDVVEVL---PGA----VAPKVARKI-------PGRTVIAAG  156 (188)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCSHHHHHHHHHHHHH-HTCSEEEEE---SGG----GHHHHHTTS-------TTSEEEEES
T ss_pred             HHHHHHHHHcCCEEeeEEEEEEeHHHhhhhhhccc-cCCCeEeec---CCC----chHHHHHHh-------cCCCEEEEC
Confidence            4677788888888755432222  33333333333 579999998   751    123343333       478999999


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEcc-cccC
Q 031554          110 GLG-PSTIAEAASAGANCIVAGS-SVFG  135 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GS-ai~~  135 (157)
                      +|+ .|.+.+ .++|||+++.|+ .+++
T Consensus       157 lI~t~edv~~-l~aGA~aIsTs~~~LW~  183 (188)
T 1vkf_A          157 LVETEEEARE-ILKHVSAISTSSRILWK  183 (188)
T ss_dssp             CCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred             CcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence            999 799999 999999999996 4554

>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A

Probab=96.99  E-value=0.022  Score=44.51  Aligned_cols=124  Identities=14%  Similarity=0.165  Sum_probs=78.0

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HHhhHhc-CCCCC-
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VYPLVEG-ANPVE-   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~~~~~~-~~~~d-   69 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  ..++.         +...++. +..++ 
T Consensus        85 ~~mLkd~G~~~ViiGHSERR~~f~Et-de~V~~Kv~~Al~~GL~pIlCvG--EtleeReag~t~~vv~~Ql~~~l~~l~~  161 (267)
T 3ta6_A           85 GAFLAKLGCSYVVVGHSERRTYHNED-DALVAAKAATALKHGLTPIVCIG--EHLDVREAGNHVAHNIEQLRGSLAGLLA  161 (267)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHTTCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHcCCCEEEEcchhhccccCCC-HHHHHHHHHHHHHCCCeEEEEeC--CCHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence            368899999999996        343 33336668889999999887774  33322         2222221 13332 


Q ss_pred             -----eEEEEeeeC----CCCCcccchh----HHHHHHHHH-hhC-----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEE
Q 031554           70 -----MVLVMTVEP----GFGGQKFMPE----MMDKVRSLR-NRY-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVA  129 (157)
Q Consensus        70 -----~vl~m~v~p----G~~gq~~~~~----~~~ki~~l~-~~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~  129 (157)
                           .|+  .-+|    |+ |..-.++    +...||+.- +++     .+++|.-.|+++++|+.++. ...+|++-+
T Consensus       162 ~~~~~vvI--AYEPVWAIGT-G~tAtpe~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~el~~~~diDG~LV  238 (267)
T 3ta6_A          162 EQIGSVVI--AYEPVWAIGT-GRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLV  238 (267)
T ss_dssp             HHHTTCEE--EECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSCEEECSCCCTTTHHHHHTSTTCCEEEE
T ss_pred             HHhCCEEE--EECChhhhcC-CcCCCHHHHHHHHHHHHHHHHHhhChhhhccceEEEcCCcCHhHHHHHhcCCCCCEEEe
Confidence                 222  3366    54 4444443    333344331 122     35899999999999999875 678999999


Q ss_pred             cccccCCCC
Q 031554          130 GSSVFGAPE  138 (157)
Q Consensus       130 GSai~~~~d  138 (157)
                      |++-.+.++
T Consensus       239 GgASL~~~~  247 (267)
T 3ta6_A          239 GGASLDGEH  247 (267)
T ss_dssp             CGGGGSHHH
T ss_pred             chHhcCHHH
Confidence            998775443

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=96.97  E-value=0.0039  Score=50.60  Aligned_cols=129  Identities=18%  Similarity=0.284  Sum_probs=78.5

Q ss_pred             HHHHhCCCCEEEEcccCC---------------c-------c---hHHHHHHHHHHc-CC-ceEEEecCCC---------
Q 031554           10 EPLGKAGASGFTFHVEIS---------------K-------D---NWQELVQRIKSK-GM-RPGVALKPGT---------   53 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~~---------------~-------~---~~~~~i~~ir~~-g~-~~gl~l~~~t---------   53 (157)
                      ..+.++|.|.|-+|.-..               |       +   .+.++++++|+. |. .+|+=+++..         
T Consensus       159 ~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~  238 (358)
T 4a3u_A          159 RHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSH  238 (358)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSS
T ss_pred             HHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCCCcccc
Confidence            445789999999996210               0       0   125788888875 32 3677777653         


Q ss_pred             CHHhHH---hhHhcCCCCCeEEEEeee-CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEE
Q 031554           54 SVEEVY---PLVEGANPVEMVLVMTVE-PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIV  128 (157)
Q Consensus        54 ~~~~~~---~~~~~~~~~d~vl~m~v~-pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV  128 (157)
                      +.+...   +.+.. -.+|++-+..-. ++..+..+.+.....++   +.. ..++.+.|+.+++.+.++++.| ||.|.
T Consensus       239 ~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik---~~~-~~~v~~~g~~~~~~ae~~l~~G~aD~V~  313 (358)
T 4a3u_A          239 PEQVFIPAAKMLSD-LDIAFLGMREGAVDGTFGKTDQPKLSPEIR---KVF-KPPLVLNQDYTFETAQAALDSGVADAIS  313 (358)
T ss_dssp             THHHHHHHHHHHHH-HTCSEEEEECCBTTCSSSBCSSCCCHHHHH---HHC-CSCEEEESSCCHHHHHHHHHHTSCSEEE
T ss_pred             hHHHHHHHHHhhhc-cCccccccccccccCcccccccHHHHHHHH---Hhc-CCcEEEeCCCCHHHHHHHHHcCCceEeH
Confidence            222211   22211 256666554211 22222233333333444   432 4568888888999999999988 99999


Q ss_pred             EcccccCCCCHHHHH
Q 031554          129 AGSSVFGAPEPAHVI  143 (157)
Q Consensus       129 ~GSai~~~~d~~~~~  143 (157)
                      +|+.+...||+-..+
T Consensus       314 ~gR~~ladPdlp~k~  328 (358)
T 4a3u_A          314 FGRPFIGNPDLPRRF  328 (358)
T ss_dssp             ESHHHHHCTTHHHHH
T ss_pred             hhHHHHhChhHHHHH
Confidence            999999888876544

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=96.94  E-value=0.0081  Score=47.76  Aligned_cols=118  Identities=14%  Similarity=0.157  Sum_probs=83.7

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEecC--------CCCHHhHHhhHh
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALKP--------GTSVEEVYPLVE   63 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~~--------~t~~~~~~~~~~   63 (157)
                      +-++.+.++|+|.|.+-.-..+.               .+.+.++++|++|.++...+.-        .++.+.+.++.+
T Consensus        85 ~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~  164 (307)
T 1ydo_A           85 RGLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSE  164 (307)
T ss_dssp             HHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHH
T ss_pred             HhHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHH
Confidence            45788999999999987544331               1267789999999988654422        145554444332


Q ss_pred             c--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           64 G--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        64 ~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                      .  -.++|.|.+    +.+.|........+.++.+++..|+.+|.+    |.|.-..|.-..+++||+.|=
T Consensus       165 ~~~~~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd  231 (307)
T 1ydo_A          165 ALFEFGISELSL----GDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFD  231 (307)
T ss_dssp             HHHHHTCSCEEE----ECSSCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCEEE
T ss_pred             HHHhcCCCEEEE----cCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEE
Confidence            0  137888876    455566656667788999998877777776    689999999988999999773

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=96.91  E-value=0.029  Score=44.63  Aligned_cols=130  Identities=13%  Similarity=0.124  Sum_probs=83.3

Q ss_pred             HHHHHHhCCCCEEE--EcccCCc----c---hHHHHHHHHHHcCCceEEE--ecC--------CCCHHhHHhhHhc--CC
Q 031554            8 YVEPLGKAGASGFT--FHVEISK----D---NWQELVQRIKSKGMRPGVA--LKP--------GTSVEEVYPLVEG--AN   66 (157)
Q Consensus         8 ~i~~~~~~gad~v~--vh~e~~~----~---~~~~~i~~ir~~g~~~gl~--l~~--------~t~~~~~~~~~~~--~~   66 (157)
                      -++.+.+.|||.|.  +|....+    +   .+.++.++++++|+-+-+.  +.|        +++.+.+....++  --
T Consensus       133 sVe~AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaEL  212 (307)
T 3fok_A          133 NVSSMVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGL  212 (307)
T ss_dssp             CHHHHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTC
T ss_pred             CHHHHHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHh
Confidence            36777888999987  6643222    1   2256777888999877664  332        2344444433321  02


Q ss_pred             CCC----eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH----h---hHHHHHH-cCCCEEEEccccc
Q 031554           67 PVE----MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP----S---TIAEAAS-AGANCIVAGSSVF  134 (157)
Q Consensus        67 ~~d----~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~----~---~i~~~~~-~Gad~vV~GSai~  134 (157)
                      +.|    +|=+   ++-        +.+   +++-+-+ .+++.+.||=+.    +   .+....+ +||.++++|+.||
T Consensus       213 GADs~~tivK~---~y~--------e~f---~~Vv~a~-~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIf  277 (307)
T 3fok_A          213 GNDSSYTWMKL---PVV--------EEM---ERVMEST-TMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLL  277 (307)
T ss_dssp             SSCCSSEEEEE---ECC--------TTH---HHHGGGC-SSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTS
T ss_pred             CCCcCCCEEEe---CCc--------HHH---HHHHHhC-CCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhc
Confidence            667    5532   221        122   4444444 478888888762    2   3344567 7999999999999


Q ss_pred             C--CCCHHHHHHHHHHHHHH
Q 031554          135 G--APEPAHVISLMRKSVED  152 (157)
Q Consensus       135 ~--~~d~~~~~~~l~~~~~~  152 (157)
                      +  .+||.+.++.+..++..
T Consensus       278 Q~~~~dp~~~v~al~~iVH~  297 (307)
T 3fok_A          278 YPQDGDVAAAVDTAARLVHT  297 (307)
T ss_dssp             SCSSSCHHHHHHHHHHHHCC
T ss_pred             cCCCCCHHHHHHHHHHHHHh
Confidence            9  89999999999988753

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=96.90  E-value=0.005  Score=48.69  Aligned_cols=116  Identities=14%  Similarity=0.128  Sum_probs=71.0

Q ss_pred             HHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHc-C---CceEEEecCCCCHHh--HHhhHhcCCCCCeEEEEe
Q 031554            8 YVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSK-G---MRPGVALKPGTSVEE--VYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~-g---~~~gl~l~~~t~~~~--~~~~~~~~~~~d~vl~m~   75 (157)
                      -++.+.+.|||-|-++.....      +.+.+.|+.+++. +   .++.+..+--|+.+.  +.++... .++|+|=   
T Consensus       131 Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~e-aGADfVK---  206 (288)
T 3oa3_A          131 EAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSL-AGADYVK---  206 (288)
T ss_dssp             HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHH-TTCSEEE---
T ss_pred             HHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHH-cCCCEEE---
Confidence            457789999999998854321      2235666667664 2   222222221222221  1122212 5899994   


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      ...||+...-..+..+.++++.+. ..++.|-+.|||+ .+++..++++||+-+
T Consensus       207 TSTGf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~Ri  260 (288)
T 3oa3_A          207 TSTGFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERL  260 (288)
T ss_dssp             CCCSSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence            346776433334455556665543 3679999999999 699999999999955

>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}

Probab=96.90  E-value=0.011  Score=46.47  Aligned_cols=124  Identities=19%  Similarity=0.226  Sum_probs=74.4

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCC-CC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANP-VE   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~-~d   69 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  ..++         .+...++. +.. .+
T Consensus       105 ~~mLkd~G~~~VIiGHSERR~~f~Et-de~V~~Kv~~Al~~GL~pIlCVG--EtleeRe~g~t~~vv~~Ql~~~l~~~~~  181 (275)
T 3kxq_A          105 AFMLKEAGASHVIIGHSERRTVYQES-DAIVRAKVQAAWRAGLVALICVG--ETLEERKSNKVLDVLTRQLEGSLPDGAT  181 (275)
T ss_dssp             HHHHHHHTCSEEEESCHHHHHHTCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHSCTTCC
T ss_pred             HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence            367899999999996        343 33336666889999999888774  3222         22222321 122 21


Q ss_pred             ---eEEEEeeeC----CCCCcccchh-HHHHHHHHHhh--------CCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEccc
Q 031554           70 ---MVLVMTVEP----GFGGQKFMPE-MMDKVRSLRNR--------YPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSS  132 (157)
Q Consensus        70 ---~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~~--------~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSa  132 (157)
                         .|  ..-+|    |+ |..-.++ .-+-.+.||+.        ..+++|.-.|+++++|+.++... .+|++-+|++
T Consensus       182 ~~~vV--IAYEPVWAIGT-GktAt~e~aqevh~~IR~~l~~~~~~~a~~~rIlYGGSV~~~Na~el~~~~dIDG~LVGgA  258 (275)
T 3kxq_A          182 AENII--IAYEPVWAVGT-GNTATSADVAEVHAFIHHKMHSRFGDEGAKIRLLYGGSVKPSNAFELLSTAHVNGALIGGA  258 (275)
T ss_dssp             TTTEE--EEECCCC---------CHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECSCCCTTTHHHHHTSTTCCEEEESGG
T ss_pred             cCCEE--EEECChhhhcC-CCCCCHHHHHHHHHHHHHHHHHhhhhhcccceEEEcCCcCHhHHHHHHcCCccceEEeehh
Confidence               23  23466    44 4333443 22223333332        13689999999999999998654 8999999998


Q ss_pred             ccCCCC
Q 031554          133 VFGAPE  138 (157)
Q Consensus       133 i~~~~d  138 (157)
                      -.+.++
T Consensus       259 SL~~~~  264 (275)
T 3kxq_A          259 SLKAID  264 (275)
T ss_dssp             GSSHHH
T ss_pred             hcCHHH
Confidence            775433

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=96.89  E-value=0.014  Score=46.81  Aligned_cols=114  Identities=14%  Similarity=0.221  Sum_probs=72.6

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC-CCCHHhHHhhHhcCCC--CCeEEEEeeeCCCCCc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP-GTSVEEVYPLVEGANP--VEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~-~t~~~~~~~~~~~~~~--~d~vl~m~v~pG~~gq   83 (157)
                      ++...+.+.|.=.+. +.+..+.. ..+++.+++.|.-+++.+.. ..+.+.++.+.+  ..  +|++.+   +.+. | 
T Consensus        61 ~la~a~~~~gg~g~~-~~~~~~~~-~~~i~~~~~~g~~v~v~~g~~~~~~~~a~~~~~--~g~~~~~i~i---~~~~-G-  131 (336)
T 1ypf_A           61 RIATYLAENNYFYIM-HRFQPEKR-ISFIRDMQSRGLIASISVGVKEDEYEFVQQLAA--EHLTPEYITI---DIAH-G-  131 (336)
T ss_dssp             HHHHHHHHTTCCCCC-CCSSGGGH-HHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHH--TTCCCSEEEE---ECSS-C-
T ss_pred             HHHHHHHhCCCEEEe-cCCCCHHH-HHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHh--cCCCCCEEEE---ECCC-C-
Confidence            344555555443222 23333334 78888888888777777632 123344455553  24  788754   3322 2 


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                       ..+..++.|+++++..+..++...+..+.+.++.+.++|||.+++|
T Consensus       132 -~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs  177 (336)
T 1ypf_A          132 -HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVG  177 (336)
T ss_dssp             -CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             -CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEe
Confidence             3456778899999987666565433677999999999999999995

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=96.84  E-value=0.018  Score=48.45  Aligned_cols=116  Identities=21%  Similarity=0.278  Sum_probs=83.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEec----CCCCHHh----HHhhHhcCCCCCeEEEEee
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALK----PGTSVEE----VYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~----~~t~~~~----~~~~~~~~~~~d~vl~m~v   76 (157)
                      ..+++.+.++|+|.|.+-.-..+ +.+.+.++++|++|..+-..++    +..+.+.    ++.+.+  .++|.|.+   
T Consensus       103 ~~~v~~a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~--~Gad~I~l---  177 (464)
T 2nx9_A          103 DTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAE--LGVDSIAL---  177 (464)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHH--TTCSEEEE---
T ss_pred             HHHHHHHHhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHH--CCCCEEEE---
Confidence            46788999999999998744333 2348899999999999866553    2334443    344443  47888876   


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                       +.+.|-.......+.++.+++.. +++|.+    |.|....|.-..+++|||.|=
T Consensus       178 -~DT~G~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD  231 (464)
T 2nx9_A          178 -KDMAGILTPYAAEELVSTLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGVDRVD  231 (464)
T ss_dssp             -EETTSCCCHHHHHHHHHHHHHHC-CSCEEEEECCTTSCHHHHHHHHHHTTCSEEE
T ss_pred             -cCCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence             34455555666777788888875 666665    689998999999999999773

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.74  E-value=0.0094  Score=50.39  Aligned_cols=80  Identities=24%  Similarity=0.356  Sum_probs=62.1

Q ss_pred             CceEEEecC-CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH
Q 031554           43 MRPGVALKP-GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS  121 (157)
Q Consensus        43 ~~~gl~l~~-~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~  121 (157)
                      ..+|.++.. ....+.++.+++  .++|.|.+-+.+|      ..+..++.++++++.+|+.+|.+.+..+.+.++.+.+
T Consensus       220 L~v~aavG~~~d~~~~a~~l~~--aG~d~I~id~a~g------~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~  291 (496)
T 4fxs_A          220 LRVGAAVGAAPGNEERVKALVE--AGVDVLLIDSSHG------HSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIE  291 (496)
T ss_dssp             BCCEEECCSSSCCHHHHHHHHH--TTCSEEEEECSCT------TSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHH
T ss_pred             eeeeeeeccccchHHHHHHHHh--ccCceEEeccccc------cchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHH
Confidence            345666654 346778888886  5899998765543      2346778899999988889998876788999999999


Q ss_pred             cCCCEEEEc
Q 031554          122 AGANCIVAG  130 (157)
Q Consensus       122 ~Gad~vV~G  130 (157)
                      +|||.+++|
T Consensus       292 aGaD~I~Vg  300 (496)
T 4fxs_A          292 AGVSAVKVG  300 (496)
T ss_dssp             HTCSEEEEC
T ss_pred             hCCCEEEEC
Confidence            999999986

>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus}

Probab=96.72  E-value=0.023  Score=43.95  Aligned_cols=120  Identities=17%  Similarity=0.245  Sum_probs=74.5

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------h----HHhhHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------E----VYPLVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~----~~~~~~~~~~   67 (157)
                      .+++.++|+++|.+.        .|+ ++.+.+-++.+.++|+.+.+=+.  .+++         .    ++..+   ..
T Consensus        80 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l---~~  153 (249)
T 3th6_A           80 PGMIKDCGGQWVILGHSERRHVFKED-DVLIGEKIKHALESGLNVIACIG--ELLEDREAGRTEEVCFRQIKHIA---SN  153 (249)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHTTTCHHHHHHHHHHHHH---TT
T ss_pred             HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHH---hc
Confidence            368899999999996        243 22335556889999999888775  3222         1    22333   22


Q ss_pred             C---CeEEEEeeeC----CCCCcccchh----HHHHHHHH-HhhC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEE
Q 031554           68 V---EMVLVMTVEP----GFGGQKFMPE----MMDKVRSL-RNRY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVA  129 (157)
Q Consensus        68 ~---d~vl~m~v~p----G~~gq~~~~~----~~~ki~~l-~~~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~  129 (157)
                      +   .-+ +..-+|    |+ |..-.++    +...||+. ++.+     .+++|...|+++++|+.++ ...++|++-+
T Consensus       154 ~~~~~~~-vIAYEPvWAIGT-G~~At~e~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV  231 (249)
T 3th6_A          154 VKDWSKV-VIAYEPVWAIGT-GKTATPDQAQEVHSKVRNWLSTNVSADVASKVRIQYGGSVNAGNCKELGRKPDIDGFLV  231 (249)
T ss_dssp             CSCGGGE-EEEECCTTTCCC----CCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTTCCEEEE
T ss_pred             hhhhcCE-EEEECCcchhcC-CCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCccCHhHHHHHhcCCCCCEEEe
Confidence            2   111 234466    43 4444443    33334432 1122     2479999999999999876 5689999999


Q ss_pred             cccccCC
Q 031554          130 GSSVFGA  136 (157)
Q Consensus       130 GSai~~~  136 (157)
                      |++-.++
T Consensus       232 GgASL~~  238 (249)
T 3th6_A          232 GGASLKP  238 (249)
T ss_dssp             CGGGGST
T ss_pred             ehHhhhH
Confidence            9987753

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=96.71  E-value=0.0038  Score=51.10  Aligned_cols=97  Identities=15%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554           32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG  110 (157)
                      .+.++++++. +..+.+-.  -...+.++.+.+  .++|.|.+ +-+.|.. ....+..++-+.++++.. +.+|.++||
T Consensus       214 ~~~i~~i~~~~~~Pv~vkg--v~t~e~a~~a~~--aGad~I~v-s~~gg~~-~d~~~~~~~~l~~v~~~~-~~pVia~GG  286 (380)
T 1p4c_A          214 WEALRWLRDLWPHKLLVKG--LLSAEDADRCIA--EGADGVIL-SNHGGRQ-LDCAISPMEVLAQSVAKT-GKPVLIDSG  286 (380)
T ss_dssp             HHHHHHHHHHCCSEEEEEE--ECCHHHHHHHHH--TTCSEEEE-CCGGGTS-CTTCCCGGGTHHHHHHHH-CSCEEECSS
T ss_pred             HHHHHHHHHhcCCCEEEEe--cCcHHHHHHHHH--cCCCEEEE-cCCCCCc-CCCCcCHHHHHHHHHHHc-CCeEEEECC
Confidence            5688888885 54444321  144566666665  58999988 2232211 001122345556666543 348999999


Q ss_pred             CC-HhhHHHHHHcCCCEEEEcccccC
Q 031554          111 LG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus       111 I~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      |+ .+++.++..+|||.+.+||+++.
T Consensus       287 I~~~~dv~kal~~GAdaV~iGr~~l~  312 (380)
T 1p4c_A          287 FRRGSDIVKALALGAEAVLLGRATLY  312 (380)
T ss_dssp             CCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred             CCCHHHHHHHHHhCCcHhhehHHHHH
Confidence            97 68999999999999999998763

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=96.71  E-value=0.019  Score=46.77  Aligned_cols=112  Identities=19%  Similarity=0.080  Sum_probs=75.8

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      .+...++++|. .-.+|..   .++++..+.+++....++..+... ...+.++.+.+  .++|+|.+-+.+ |.     
T Consensus        57 ~lA~A~a~~Gg-~gvi~~~---~s~ee~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~--aGvdvI~id~a~-G~-----  124 (361)
T 3r2g_A           57 NMANFMHSKGA-MGALHRF---MTIEENIQEFKKCKGPVFVSVGCTENELQRAEALRD--AGADFFCVDVAH-AH-----  124 (361)
T ss_dssp             HHHHHHHHTTC-EEBCCSC---SCHHHHHHHHHTCCSCCBEEECSSHHHHHHHHHHHH--TTCCEEEEECSC-CS-----
T ss_pred             HHHHHHHHcCC-CEEEeCC---CCHHHHHHHHhhcceEEEEEcCCCHHHHHHHHHHHH--cCCCEEEEeCCC-CC-----
Confidence            35667778885 3334532   233888888888776677777432 22345566655  578976553222 32     


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      .+..++.|+.+|+..++++|.+.+-.+.+.+..+.++|||.+++|
T Consensus       125 ~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg  169 (361)
T 3r2g_A          125 AKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAG  169 (361)
T ss_dssp             SHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             cHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEc
Confidence            235567788888877788887755677999999999999999986

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=96.67  E-value=0.0068  Score=51.81  Aligned_cols=80  Identities=18%  Similarity=0.308  Sum_probs=63.0

Q ss_pred             CceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH
Q 031554           43 MRPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS  121 (157)
Q Consensus        43 ~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~  121 (157)
                      .++|.++.... ..+++..+.+  .++|++.+-+.+ |     .....++.++.+|+.+|+++|.+..-.+.+.+..|.+
T Consensus       270 L~VgAAVgv~~d~~eR~~aLv~--AGvD~iviD~ah-G-----hs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~  341 (556)
T 4af0_A          270 LYCGAAIGTRPGDKDRLKLLAE--AGLDVVVLDSSQ-G-----NSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIA  341 (556)
T ss_dssp             BCCEEEECSSHHHHHHHHHHHH--TTCCEEEECCSC-C-----CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH
T ss_pred             eeeEEEeccCccHHHHHHHHHh--cCCcEEEEeccc-c-----ccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHH
Confidence            34677776443 3466777776  689999886555 3     2346788899999999999998888888999999999


Q ss_pred             cCCCEEEEc
Q 031554          122 AGANCIVAG  130 (157)
Q Consensus       122 ~Gad~vV~G  130 (157)
                      +|||++-+|
T Consensus       342 aGAD~vkVG  350 (556)
T 4af0_A          342 AGADGLRIG  350 (556)
T ss_dssp             HTCSEEEEC
T ss_pred             cCCCEEeec
Confidence            999999998

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=96.61  E-value=0.068  Score=40.40  Aligned_cols=113  Identities=18%  Similarity=0.225  Sum_probs=68.2

Q ss_pred             HHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHcCCceEEEe---cCCCCHHhHH---hhHhcCCCCCeEEEEe
Q 031554            8 YVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSKGMRPGVAL---KPGTSVEEVY---PLVEGANPVEMVLVMT   75 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~g~~~gl~l---~~~t~~~~~~---~~~~~~~~~d~vl~m~   75 (157)
                      ..+.+.+.|||.|-++....      ...+.+.++.+++....+.+-+   .+..+.+.+.   +.+.- .++|+|-   
T Consensus        75 ~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~~~l~~~~~~~~a~~a~e-aGad~I~---  150 (225)
T 1mzh_A           75 EAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIE-AGADFIK---  150 (225)
T ss_dssp             HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHH-HTCSEEE---
T ss_pred             HHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeCCCCCHHHHHHHHHHHHH-hCCCEEE---
Confidence            34678899999999764321      1122456778877632333434   3443333222   22221 4899992   


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      +..|+....   ..++-++++++. ..+++|.+.|||+ .+++.+++++|||.+
T Consensus       151 tstg~~~gg---a~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~i  201 (225)
T 1mzh_A          151 TSTGFAPRG---TTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI  201 (225)
T ss_dssp             CCCSCSSSC---CCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             ECCCCCCCC---CCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHH
Confidence            233542111   234455666654 3479999999998 799999999999954

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.59  E-value=0.014  Score=49.31  Aligned_cols=79  Identities=25%  Similarity=0.381  Sum_probs=60.6

Q ss_pred             ceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc
Q 031554           44 RPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA  122 (157)
Q Consensus        44 ~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~  122 (157)
                      .++.++... ...+.++.+++  .++|.|.+-+.++      ..+..++.++++++..++++|.+....+.+.+..+.++
T Consensus       219 ~v~aavG~~~~~~~~a~~l~~--aG~d~I~id~a~g------~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a  290 (490)
T 4avf_A          219 RVGAAVGTGADTGERVAALVA--AGVDVVVVDTAHG------HSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA  290 (490)
T ss_dssp             CCEEEECSSTTHHHHHHHHHH--TTCSEEEEECSCC------SBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT
T ss_pred             eeeeeeccccchHHHHHHHhh--cccceEEecccCC------cchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc
Confidence            456677554 44577777776  5899887754432      24567788999999888888888667889999999999


Q ss_pred             CCCEEEEc
Q 031554          123 GANCIVAG  130 (157)
Q Consensus       123 Gad~vV~G  130 (157)
                      |||.+++|
T Consensus       291 GaD~I~vg  298 (490)
T 4avf_A          291 GADAVKVG  298 (490)
T ss_dssp             TCSEEEEC
T ss_pred             CCCEEEEC
Confidence            99999996

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=96.57  E-value=0.016  Score=48.00  Aligned_cols=129  Identities=14%  Similarity=0.149  Sum_probs=77.1

Q ss_pred             HHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-C-CceEEEecCCCC--------
Q 031554           10 EPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-G-MRPGVALKPGTS--------   54 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g-~~~gl~l~~~t~--------   54 (157)
                      ..+.++|+|.|-+|.-.         +      |          ..+.++++++|+. | -.+|+=++|...        
T Consensus       175 ~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~  254 (407)
T 3tjl_A          175 QKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHK  254 (407)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGG
T ss_pred             HHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcccccCCCcccc
Confidence            44678999999999644         1      0          0226677888775 4 257888887431        


Q ss_pred             -----HH----hHHhh---HhcCCC--CCeEEEEeeeCCCCCcccchhH--HHHHHHHHhhCCCCcEEEEcCCCHhh-HH
Q 031554           55 -----VE----EVYPL---VEGANP--VEMVLVMTVEPGFGGQKFMPEM--MDKVRSLRNRYPSLDIEVDGGLGPST-IA  117 (157)
Q Consensus        55 -----~~----~~~~~---~~~~~~--~d~vl~m~v~pG~~gq~~~~~~--~~ki~~l~~~~~~~~I~vdGGI~~~~-i~  117 (157)
                           .+    .++.+   .+  .+  +|||-+.  .|.+.++...+..  ...++.+++.. +.++.+-|||+.+. +.
T Consensus       255 d~~~~~~~~~~l~~~L~~~~~--~G~~l~ylhv~--~~~~~~~~~~~~~~~~~~~~~ir~~~-~~PvI~~Ggi~~~~dA~  329 (407)
T 3tjl_A          255 DTVHPLTTFSYLVHELQQRAD--KGQGIAYISVV--EPRVSGNVDVSEEDQAGDNEFVSKIW-KGVILKAGNYSYDAPEF  329 (407)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHH--TTCCCSEEEEE--CTTEETTEECCGGGCCCCSHHHHHHC-CSEEEEESCGGGGTTTT
T ss_pred             cccccHHHHHHHHHHHHhHhh--cCCceeEEEEE--ccccCCCCcCCccchhHHHHHHHHHh-CCCEEecCCCCCHHHHH
Confidence                 22    22333   22  24  8998765  2332222111100  11234445543 46889999999654 55


Q ss_pred             HHHH----cCCCEEEEcccccCCCCHHHHH
Q 031554          118 EAAS----AGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       118 ~~~~----~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      ++++    .+||.|.+|++++..||+-..+
T Consensus       330 ~~i~~~~~g~aDlVa~GR~~iaNPdL~~ri  359 (407)
T 3tjl_A          330 KTLKEDIADKRTLVGFSRYFTSNPNLVWKL  359 (407)
T ss_dssp             HHHHHHHTTSSEEEECSHHHHHCTTHHHHH
T ss_pred             HHHHhhccCCCeEEEeChhhhhCchHHHHH
Confidence            5444    4699999999988888876544

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=96.56  E-value=0.11  Score=41.73  Aligned_cols=123  Identities=16%  Similarity=0.225  Sum_probs=75.2

Q ss_pred             HHHHHhCCCCEEEEcccCCc--c---------hHHHHHHHHHHcCCceEEEe--cCC---CC------------HH-hHH
Q 031554            9 VEPLGKAGASGFTFHVEISK--D---------NWQELVQRIKSKGMRPGVAL--KPG---TS------------VE-EVY   59 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~--~---------~~~~~i~~ir~~g~~~gl~l--~~~---t~------------~~-~~~   59 (157)
                      ++.+.+.|||.|.+|.-...  +         .+.++.+++++.|+.+-+.+  .|.   .+            +. .++
T Consensus       116 ve~a~~~GADAVk~lv~~g~d~~~e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R  195 (332)
T 3iv3_A          116 IKRLKEAGADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMK  195 (332)
T ss_dssp             HHHHHHTTCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHH
Confidence            67889999999999943211  1         23667778999999887744  332   11            11 123


Q ss_pred             hh--HhcCCCCCeEEEEeeeCC-------CCCccc---chhHHHHHHHHHhhCCCCcE-EEEcCCCHhh----HHHHHHc
Q 031554           60 PL--VEGANPVEMVLVMTVEPG-------FGGQKF---MPEMMDKVRSLRNRYPSLDI-EVDGGLGPST----IAEAASA  122 (157)
Q Consensus        60 ~~--~~~~~~~d~vl~m~v~pG-------~~gq~~---~~~~~~ki~~l~~~~~~~~I-~vdGGI~~~~----i~~~~~~  122 (157)
                      ..  +++  ++|++=+-  .||       |+....   ..+..+..+++-+.. ++++ ...||.+.+.    ++...++
T Consensus       196 ~~~~~el--GaDv~Kve--~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~-~~P~v~lsgG~~~~~fl~~v~~A~~a  270 (332)
T 3iv3_A          196 VFSAERF--GIDVLKVE--VPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAST-DLPYIYLSAGVSAELFQETLVFAHKA  270 (332)
T ss_dssp             HHTSGGG--CCSEEEEC--CSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTC-SSCEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             HHhhcCc--CCcEEEEe--cCCChhhhcccccccccccHHHHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            33  232  78888442  243       322110   123334455554443 5774 5699999644    4455789


Q ss_pred             CC--CEEEEcccccCC
Q 031554          123 GA--NCIVAGSSVFGA  136 (157)
Q Consensus       123 Ga--d~vV~GSai~~~  136 (157)
                      ||  .+|.+|+++|+.
T Consensus       271 Ga~f~Gv~~GRnvwq~  286 (332)
T 3iv3_A          271 GAKFNGVLCGRATWAG  286 (332)
T ss_dssp             TCCCCEEEECHHHHTT
T ss_pred             CCCcceEEeeHHHHHh
Confidence            99  999999999985

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.50  E-value=0.098  Score=43.85  Aligned_cols=121  Identities=21%  Similarity=0.253  Sum_probs=74.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcch--HHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDN--WQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG--   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~--~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~--   81 (157)
                      ...+..+.+.|+|.+.+.. +..+.  +...++.+++.-..+.+.=+..+ .+..+.+    .++|.|.+ ++-||..  
T Consensus       230 ~~~a~~l~~~gvd~lvvdt-a~G~~~~~L~~I~~l~~~~~vpvi~k~v~~-~~~a~~l----~G~d~v~v-g~g~g~~~~  302 (486)
T 2cu0_A          230 IKRAIELDKAGVDVIVVDT-AHAHNLKAIKSMKEMRQKVDADFIVGNIAN-PKAVDDL----TFADAVKV-GIGPGSICT  302 (486)
T ss_dssp             HHHHHHHHHTTCSEEEEEC-SCCCCHHHHHHHHHHHHTCCSEEEEEEECC-HHHHTTC----TTSSEEEE-CSSCSTTBC
T ss_pred             HHHHHHHHHhcCCceEEEe-cCCcEeehhhHHHHHHHHhCCccccCCcCC-HHHHHHh----hCCCeEEE-eeeecccee
Confidence            4567788899999887753 11222  24556677775322223222233 3334433    37899987 4333321  


Q ss_pred             -------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           82 -------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        82 -------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                             |.+ ....+..++++++.. +++|.+||||. ..++...+.+|||.+-+||.+..
T Consensus       303 ~r~~~~~g~~-~~~~l~~~~~~~~~~-~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~  362 (486)
T 2cu0_A          303 TRIVAGVGVP-QITAVAMVADRAQEY-GLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAG  362 (486)
T ss_dssp             HHHHTCCCCC-HHHHHHHHHHHHHHH-TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             eeEEeecCcc-hHHHHHHHHHHHHHc-CCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhc
Confidence                   011 113445555555443 68999999999 68888888899999999998764

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=96.43  E-value=0.019  Score=50.67  Aligned_cols=117  Identities=21%  Similarity=0.252  Sum_probs=85.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCC----------CCHHhH----HhhHhcCCCCCe
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPG----------TSVEEV----YPLVEGANPVEM   70 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~----------t~~~~~----~~~~~~~~~~d~   70 (157)
                      ..+++.+.++|+|.+.+..-..+ +.+...++++++.|..+-.+++-.          ++.+.+    +.+.+  .++|.
T Consensus       200 ~~~i~~a~~~Gvd~irIf~s~n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~--~Ga~~  277 (718)
T 3bg3_A          200 FKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVR--AGTHI  277 (718)
T ss_dssp             HHHHHHHHHHTCCEEEEECSSCCHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHH--HTCSE
T ss_pred             HHHHHHHHhcCcCEEEEEecHHHHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHH--cCCCE
Confidence            56889999999999888753322 133778889999998876655322          134433    33333  37888


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                      |.+    +.+.|-.......+.++.+++..++++|.+    |-|....|.-..+++|||.|=
T Consensus       278 I~l----~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~VD  335 (718)
T 3bg3_A          278 LCI----KDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVD  335 (718)
T ss_dssp             EEE----ECTTSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEEE
T ss_pred             EEE----cCcCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEEE
Confidence            876    566677666777888999999877777776    788888888888999999773

>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*

Probab=96.32  E-value=0.022  Score=44.13  Aligned_cols=141  Identities=9%  Similarity=0.092  Sum_probs=93.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc------------chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK------------DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLV   73 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~------------~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~   73 (157)
                      ..+++.+.+..++.||+-.|..+            +.+..+++.+++.|+++.+++.|+..  .++.-.+  -++|+|-+
T Consensus        76 ~emi~ial~~kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFIDpd~~--qi~aA~~--~GAd~IEL  151 (260)
T 3o6c_A           76 DEILNLALKLKPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFINPSLE--DIEKSKI--LKAQFIEL  151 (260)
T ss_dssp             HHHHHHHHHHCCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEECSCHH--HHHHHHH--TTCSEEEE
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHH--hCCCEEEE
Confidence            35889999999999999977653            12377999999999999999976532  2332222  38999988


Q ss_pred             EeeeCCCC-C-----------------------cccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHH-cCCCE
Q 031554           74 MTVEPGFG-G-----------------------QKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAAS-AGANC  126 (157)
Q Consensus        74 m~v~pG~~-g-----------------------q~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~-~Gad~  126 (157)
                      .|-.-.-. .                       +......++++.+..+.  ..++.+.+.-|+|-+|+..+.. -+..-
T Consensus       152 hTG~YA~a~~~~~sn~~~~~~~~~~l~~~~~~~~~~~~~el~~l~~aA~~A~~lGL~VnAGHGL~y~Nv~~ia~ip~i~E  231 (260)
T 3o6c_A          152 HTGHYANLHNALFSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVKPVVKIKEICE  231 (260)
T ss_dssp             CCHHHHHHHHHHHSSGGGSTTCCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECTTCCTTTTHHHHTCTTCCE
T ss_pred             echHhhhhhhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCCeE
Confidence            64321100 0                       00011234455444432  2579999999999999988743 46788


Q ss_pred             EEEcccccCC---CCHHHHHHHHHHHH
Q 031554          127 IVAGSSVFGA---PEPAHVISLMRKSV  150 (157)
Q Consensus       127 vV~GSai~~~---~d~~~~~~~l~~~~  150 (157)
                      +-+|-+|+..   --..++++++++.+
T Consensus       232 lnIGHaiIa~Al~~Gl~~AV~~m~~l~  258 (260)
T 3o6c_A          232 LNIGQSIVARSVFTGLQNAILEMKELI  258 (260)
T ss_dssp             EEECHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred             EecCHHHHHHHHHHhHHHHHHHHHHHh
Confidence            9999776642   24567777777654

>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A

Probab=96.28  E-value=0.04  Score=45.40  Aligned_cols=65  Identities=28%  Similarity=0.386  Sum_probs=46.6

Q ss_pred             CCCeEEEEeeeC--CCCCcccchhHHHHHHHH-Hhh-CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554           67 PVEMVLVMTVEP--GFGGQKFMPEMMDKVRSL-RNR-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        67 ~~d~vl~m~v~p--G~~gq~~~~~~~~ki~~l-~~~-~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      .+|.|.+-+..|  |     -..+..+++++. .+. ++++.|++-|||+++++.++.++|+|.|.+|+.+.+.
T Consensus       236 ~~d~IrlDs~~~~~g-----d~~~~v~~v~~~ld~~G~~~~~I~aSggl~~~~i~~l~~~GvD~~gvGt~l~~~  304 (398)
T 2i1o_A          236 KVDYIRLDTPSSRRG-----NFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSA  304 (398)
T ss_dssp             CCCEEEECCCGGGCS-----CHHHHHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHTTCCEEEECHHHHTC
T ss_pred             CCcEEEeCCCCCCcc-----cHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHcCCCEEEeCcccCCC
Confidence            688888765433  2     122344444432 222 3578999999999999999999999999999987654

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=96.27  E-value=0.054  Score=44.64  Aligned_cols=77  Identities=21%  Similarity=0.385  Sum_probs=54.4

Q ss_pred             ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC
Q 031554           44 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG  123 (157)
Q Consensus        44 ~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G  123 (157)
                      .++.++.+.+ .+.++.+++  .++|+|.+-+.+ |     ..+...+.|+++++.. +.++.+.+-.+.+.+..+.++|
T Consensus       136 ~v~~~v~~~~-~e~~~~lve--aGvdvIvldta~-G-----~~~~~~e~I~~ik~~~-~i~Vi~g~V~t~e~A~~a~~aG  205 (400)
T 3ffs_A          136 RVGAAIGVNE-IERAKLLVE--AGVDVIVLDSAH-G-----HSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENG  205 (400)
T ss_dssp             CCEEEECCC--CHHHHHHHH--HTCSEEEECCSC-C-----SBHHHHHHHHHHHTTC-CCEEEEEEECSHHHHHHHHHTT
T ss_pred             eEEeecCCCH-HHHHHHHHH--cCCCEEEEeCCC-C-----CcccHHHHHHHHHhcC-CCeEEEeecCCHHHHHHHHHcC
Confidence            4566666554 677777776  589988663221 2     1234567788888875 6777665556789999999999


Q ss_pred             CCEEEEc
Q 031554          124 ANCIVAG  130 (157)
Q Consensus       124 ad~vV~G  130 (157)
                      ||.|++|
T Consensus       206 AD~I~vG  212 (400)
T 3ffs_A          206 ADGIKVG  212 (400)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEe
Confidence            9999996

>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A

Probab=96.20  E-value=0.062  Score=41.37  Aligned_cols=122  Identities=15%  Similarity=0.156  Sum_probs=76.9

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH----------------------------cCCceEEEecCCCCHHhHH
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKS----------------------------KGMRPGVALKPGTSVEEVY   59 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~----------------------------~g~~~gl~l~~~t~~~~~~   59 (157)
                      ++..+.++|++.|.++.-...+.+..+.+.++.                            ....+++.|....-+..+.
T Consensus        83 ~i~~~l~~g~~gI~~P~V~s~~ev~~~~~~~~~~p~g~Rg~~~~~~~~~~g~~~~~~~~~~~~~~v~~~IEt~~av~~~~  162 (256)
T 1dxe_A           83 IIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVD  162 (256)
T ss_dssp             HHHHHHHTTCCEEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHH
T ss_pred             HHHHHHhcCCceeeecCcCCHHHHHHHHHHhcCCCCCccCCCcchhhhhcCchHHHHHhcCcccEEEEEECCHHHHHhHH
Confidence            578888999999999854333332555555531                            1244566674333445677


Q ss_pred             hhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHH---HhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           60 PLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSL---RNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        60 ~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l---~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      +++.. +.+|.+.+.+-    .-|..++...|..+.-++++   .+. .++++.+-.+ +++.++.+++.|.+.+.+|+.
T Consensus       163 eIa~~-~~vd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~a-~G~~~~v~~~-d~~~~~~~~~~G~~~~s~~~d  239 (256)
T 1dxe_A          163 AIAAT-EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASA-HGKPSGILAP-VEADARRYLEWGATFVAVGSD  239 (256)
T ss_dssp             HHHTS-TTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHH-TTCCEEEECC-SHHHHHHHHHTTCCEEEEEEH
T ss_pred             HHhCC-CCCCEEEEChHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH-hCCceEEecC-CHHHHHHHHHcCCCEEEechH
Confidence            77743 58999988643    23555555555554433333   222 2455555444 789999999999999999974

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}

Probab=96.19  E-value=0.052  Score=44.17  Aligned_cols=116  Identities=14%  Similarity=0.082  Sum_probs=77.1

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC----CCCeE
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN----PVEMV   71 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~----~~d~v   71 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-.  .+.. .+.++.+|+. |  +.+.+..|-....+...++++.+.    .++++
T Consensus       145 ~~~~~~~~a~~~~~~Gf~~vKik~g~~~~~~~-~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~i  223 (389)
T 2oz8_A          145 DDDAFVSLFSHAASIGYSAFKIKVGHRDFDRD-LRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWV  223 (389)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCCSSHHHH-HHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEE
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEccCCCCHHHH-HHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEE
Confidence            56666544   457899999999643  1233 6788888884 4  455556666666655444443102    23333


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEEEc
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~G  130 (157)
                                .|++.+..++-.+++++..++++|+.|+.++.+.+.++++.| +|++.++
T Consensus       224 ----------EqP~~~~~~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~i~~~~~d~v~ik  273 (389)
T 2oz8_A          224 ----------EDPILRHDHDGLRTLRHAVTWTQINSGEYLDLQGKRLLLEAHAADILNVH  273 (389)
T ss_dssp             ----------ESCBCTTCHHHHHHHHHHCCSSEEEECTTCCHHHHHHHHHTTCCSEEEEC
T ss_pred             ----------eCCCCCcCHHHHHHHHhhCCCCCEEeCCCCCHHHHHHHHHcCCCCEEEEC
Confidence                      345555566777777776437999999999889999888777 8999887

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*

Probab=96.18  E-value=0.092  Score=42.85  Aligned_cols=117  Identities=21%  Similarity=0.254  Sum_probs=79.4

Q ss_pred             HHHHHHhCCCCEEEEcccCCc--------------chHHHHHHHHHHcC--CceEEEec--CCCCHHhHHhhHhc-CCCC
Q 031554            8 YVEPLGKAGASGFTFHVEISK--------------DNWQELVQRIKSKG--MRPGVALK--PGTSVEEVYPLVEG-ANPV   68 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~--------------~~~~~~i~~ir~~g--~~~gl~l~--~~t~~~~~~~~~~~-~~~~   68 (157)
                      -++.+.++|+|.|++-.-+.+              +.+.+.++++|++|  .++-+.+.  +.++.+.+.++.+. ...+
T Consensus        79 di~~a~~~g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~a  158 (382)
T 2ztj_A           79 AAKVAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPYV  158 (382)
T ss_dssp             HHHHHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGGC
T ss_pred             hHHHHHHcCCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            378899999999987643332              22377889999999  77766653  33344444443331 0126


Q ss_pred             CeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        69 d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                      |.|.+    |.+.|-.......+.++.+++.. ++.+|.+    |.|.-..|.-..+++||+.|=
T Consensus       159 ~~i~l----~DT~G~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd  219 (382)
T 2ztj_A          159 DRVGL----ADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVD  219 (382)
T ss_dssp             SEEEE----EETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred             CEEEe----cCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEE
Confidence            77665    45556665666777888888863 5777776    589998899888999999774

>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0

Probab=96.13  E-value=0.078  Score=41.05  Aligned_cols=120  Identities=17%  Similarity=0.165  Sum_probs=75.8

Q ss_pred             HHHHHHhCCCCEEEEcc-cCCcchHHHHHHHHHH-----------------------------cCCceEEEecCCCCHHh
Q 031554            8 YVEPLGKAGASGFTFHV-EISKDNWQELVQRIKS-----------------------------KGMRPGVALKPGTSVEE   57 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~-e~~~~~~~~~i~~ir~-----------------------------~g~~~gl~l~~~t~~~~   57 (157)
                      .+..+.+.|+|.|.++. ++.++. .++.+.++-                             ....+++.|....-+..
T Consensus        80 di~~~ld~G~~gI~lP~v~saed~-~~~~~~~~~~p~G~Rg~~~~r~~~~g~~~~~~y~~~~~~~~~v~~mIEt~~av~~  158 (261)
T 3qz6_A           80 HVQRLLDIGAEGFMIPGVQSAETM-RETVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQERNDEIFIMAQIEHVKAVED  158 (261)
T ss_dssp             HHHHHHHHTCCEEEETTCCSHHHH-HHHHHHHSCTTTCCCCCCCGGGGTTCCCCHHHHHHHHHTTCEEEEEECCHHHHHT
T ss_pred             HHHHHHhcCCCEEEECCcCCHHHH-HHHHHHhccCCCCCcCcccchhhhccccchhhHHhcCCCCeEEEEEECCHHHHHH
Confidence            57788899999999994 444443 666666531                             13456666743444466


Q ss_pred             HHhhHhcCCCCCeEEEEeee----CCCCCcccchhHHHHHHHH----HhhCCCCcEEEEcCCCHhhH-HHHHHcCCCEEE
Q 031554           58 VYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSL----RNRYPSLDIEVDGGLGPSTI-AEAASAGANCIV  128 (157)
Q Consensus        58 ~~~~~~~~~~~d~vl~m~v~----pG~~gq~~~~~~~~ki~~l----~~~~~~~~I~vdGGI~~~~i-~~~~~~Gad~vV  128 (157)
                      +.+++.. +.+|.+.+.+-+    -|..++...+..+.-++++    ++.  ++++.+=++ +++.+ +.+.+.|++.+.
T Consensus       159 ~~eIaa~-~~vd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~aa--G~~~g~~~~-~~~~~~~~~~~~G~~~~s  234 (261)
T 3qz6_A          159 IDSILAV-QGVDAVIFGPRDLSNDLGIIGQTEHPKVYECYEKVYRAADRQ--GVVKGFFTA-ADAAKMGWAVERGAQMLL  234 (261)
T ss_dssp             HHHHHTS-TTCCEEEECHHHHHHHTTCTTCTTCHHHHHHHHHHHHHHHHH--TCEEEEEES-SCGGGGHHHHHTTCCEEE
T ss_pred             HHHHhCC-CCCCEEEECHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEeC-CHHHHHHHHHHCCCCEEE
Confidence            7777744 679999886432    3444554445443333333    233  455555444 78888 899999999999


Q ss_pred             Eccc
Q 031554          129 AGSS  132 (157)
Q Consensus       129 ~GSa  132 (157)
                      +|+-
T Consensus       235 ~~~D  238 (261)
T 3qz6_A          235 WSGD  238 (261)
T ss_dssp             EEEH
T ss_pred             EhhH
Confidence            9974

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=96.13  E-value=0.041  Score=42.49  Aligned_cols=101  Identities=18%  Similarity=0.236  Sum_probs=67.9

Q ss_pred             HHHHHHHHcCCceEEEec---CC-------CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC
Q 031554           33 ELVQRIKSKGMRPGVALK---PG-------TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS  102 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~---~~-------t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~  102 (157)
                      .+.+.+++.|..+...+.   |+       +|.+.++.|.+  .+++.+-+.+-..-|.|      ..+.++.+++.. +
T Consensus        36 ~~~~al~~~~~~~IaE~k~aSPskg~i~~~~p~~~A~~~~~--~GA~~isvlt~~~~f~G------~~~~l~~i~~~v-~  106 (254)
T 1vc4_A           36 SFKEALLRPGLSVIAEVKRQSPSEGLIREVDPVEAALAYAR--GGARAVSVLTEPHRFGG------SLLDLKRVREAV-D  106 (254)
T ss_dssp             CHHHHHTSSSCEEEEEECSCCTTTCCCCSCCHHHHHHHHHH--TTCSEEEEECCCSSSCC------CHHHHHHHHHHC-C
T ss_pred             CHHHHHhhcCCcEEeeecCCCcCCCcCCCCCHHHHHHHHHH--cCCCEEEEecchhhhcc------CHHHHHHHHHhc-C
Confidence            455566655533333453   33       34666777775  68999988765544555      234566666653 7


Q ss_pred             CcEEEEcCCCH-hhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554          103 LDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       103 ~~I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      ++|..-++|.. ..+.++.++|||++.+|.+.+. ++..+.+
T Consensus       107 lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~-~~l~~l~  147 (254)
T 1vc4_A          107 LPLLRKDFVVDPFMLEEARAFGASAALLIVALLG-ELTGAYL  147 (254)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG-GGHHHHH
T ss_pred             CCEEECCcCCCHHHHHHHHHcCCCEEEECccchH-HHHHHHH
Confidence            88888888875 5899999999999999998776 4444433

>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}

Probab=96.09  E-value=0.053  Score=43.36  Aligned_cols=109  Identities=13%  Similarity=0.079  Sum_probs=75.1

Q ss_pred             HhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceEEEec---CCCCHH-hHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554           13 GKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPGVALK---PGTSVE-EVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus        13 ~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~gl~l~---~~t~~~-~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      .++|+|.+.+.....  +.. .+.++++|++|..+...+.   |.++.+ .+....++..++|.|.+    +.+.|....
T Consensus        97 ~~~Gvd~~ri~~~~~nle~~-~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~G~~~i~l----~Dt~G~~~P  171 (320)
T 3dxi_A           97 IIGLVDMIRIAIDPQNIDRA-IVLAKAIKTMGFEVGFNVMYMSKWAEMNGFLSKLKAIDKIADLFCM----VDSFGGITP  171 (320)
T ss_dssp             GTTTCSEEEEEECGGGHHHH-HHHHHHHHTTTCEEEEEECCTTTGGGSTTSGGGGGGGTTTCSEEEE----ECTTSCCCH
T ss_pred             hhcCCCEEEEEecHHHHHHH-HHHHHHHHHCCCEEEEEEEeCCCCCCHHHHHHHHHHhhCCCCEEEE----CcccCCCCH
Confidence            458999998875432  223 5677789999999988763   332221 22222221146887766    566676656


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEE----cCCCHhhHHHHHHcCCCEE
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVD----GGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vd----GGI~~~~i~~~~~~Gad~v  127 (157)
                      ....+.++.+++.. +.+|.+=    -|....|.-..+++|||.|
T Consensus       172 ~~~~~lv~~l~~~~-~~~i~~H~Hn~~G~a~an~laA~~aGa~~v  215 (320)
T 3dxi_A          172 KEVKNLLKEVRKYT-HVPVGFHGHDNLQLGLINSITAIDDGIDFI  215 (320)
T ss_dssp             HHHHHHHHHHHHHC-CSCEEEECBCTTSCHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHHhC-CCeEEEEeCCCCccHHHHHHHHHHhCCCEE
Confidence            66777889998876 4778876    8888888888899999977

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=96.01  E-value=0.049  Score=41.31  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=70.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHcCCceEEE----ecCCCCHHhHHhhHhc--CCCCCeEEEE
Q 031554            7 DYVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSKGMRPGVA----LKPGTSVEEVYPLVEG--ANPVEMVLVM   74 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~g~~~gl~----l~~~t~~~~~~~~~~~--~~~~d~vl~m   74 (157)
                      .-++.+.+.|||-|-+|....      .+.+.+-+..+++..-..++-    ...-|+ +.+....++  -.++|+|=  
T Consensus        75 ~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~-e~i~~a~~ia~eaGADfVK--  151 (220)
T 1ub3_A           75 LEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSP-EEIARLAEAAIRGGADFLK--  151 (220)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCH-HHHHHHHHHHHHHTCSEEE--
T ss_pred             HHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHHHHHhCCCEEE--
Confidence            346788999999999996422      122255555555542222332    222232 222222221  14889994  


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCC--EEEEcccccC
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGAN--CIVAGSSVFG  135 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad--~vV~GSai~~  135 (157)
                       +.-||....-.++..+.+++.-  ..+++|-+.|||+ .+++..++++||+  +.-.|..|++
T Consensus       152 -TsTGf~~~gat~~dv~~m~~~v--g~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~~I~~  212 (220)
T 1ub3_A          152 -TSTGFGPRGASLEDVALLVRVA--QGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVALVA  212 (220)
T ss_dssp             -CCCSSSSCCCCHHHHHHHHHHH--TTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHHC
T ss_pred             -eCCCCCCCCCCHHHHHHHHHhh--CCCCeEEEECCCCCHHHHHHHHHCCCcccchhHHHHHHH
Confidence             3446552222233333333332  4578999999999 6888999999999  5544445553

>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*

Probab=95.91  E-value=0.22  Score=34.58  Aligned_cols=118  Identities=11%  Similarity=0.046  Sum_probs=67.0

Q ss_pred             EEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC
Q 031554           21 TFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY  100 (157)
Q Consensus        21 ~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~  100 (157)
                      ++..|..+--..-+-..++.+|.++- .+.+..|.+.+.+.... ..+|.|.+-+.. +.    ..+...+-++++++..
T Consensus        10 ~~~~d~HdiG~~~v~~~l~~~G~~Vi-~lG~~~p~e~~v~~a~~-~~~d~v~lS~~~-~~----~~~~~~~~i~~l~~~g   82 (137)
T 1ccw_A           10 VIGSDCHAVGNKILDHAFTNAGFNVV-NIGVLSPQELFIKAAIE-TKADAILVSSLY-GQ----GEIDCKGLRQKCDEAG   82 (137)
T ss_dssp             EETTCCCCHHHHHHHHHHHHTTCEEE-EEEEEECHHHHHHHHHH-HTCSEEEEEECS-ST----HHHHHTTHHHHHHHTT
T ss_pred             eCCCchhHHHHHHHHHHHHHCCCEEE-ECCCCCCHHHHHHHHHh-cCCCEEEEEecC-cC----cHHHHHHHHHHHHhcC
Confidence            34445434331223345777888764 23335566654443332 478998875444 21    1223333466666654


Q ss_pred             C-CCcEEEEcCC--CHhh----HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          101 P-SLDIEVDGGL--GPST----IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       101 ~-~~~I~vdGGI--~~~~----i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      . +++|.+.|..  ..+.    ...+.+.|+|.+.     ....+..+.++++++.+
T Consensus        83 ~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~-----~~g~~~~~~~~~l~~~~  134 (137)
T 1ccw_A           83 LEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVY-----APGTPPEVGIADLKKDL  134 (137)
T ss_dssp             CTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEEC-----CTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEE-----CCCCCHHHHHHHHHHHh
Confidence            3 6889888874  2344    3458899999773     12246777778777654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=95.85  E-value=0.24  Score=41.31  Aligned_cols=119  Identities=12%  Similarity=0.137  Sum_probs=82.0

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCc----chHHHHHHHHHH--------cCCceEEEecCCCC-HHhHHhhHhcCCCCCeE
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISK----DNWQELVQRIKS--------KGMRPGVALKPGTS-VEEVYPLVEGANPVEMV   71 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~----~~~~~~i~~ir~--------~g~~~gl~l~~~t~-~~~~~~~~~~~~~~d~v   71 (157)
                      ..+.++.+.+.+...+.|--+...    -+..++++.+..        ....+|..+++... .+.++.+.+  .++|.+
T Consensus       172 l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~--~G~d~i  249 (491)
T 1zfj_A          172 LETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFE--AGADAI  249 (491)
T ss_dssp             HHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHH--HTCSEE
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHH--cCCCeE
Confidence            467788888888888877644211    022567777763        23556777765433 455666665  479998


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      .+-+.    .|  ..+..++.++++++..|+.++.+.|..+.+.+..+.++|||.+.+|.
T Consensus       250 vi~~a----~g--~~~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~  303 (491)
T 1zfj_A          250 VIDTA----HG--HSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGI  303 (491)
T ss_dssp             EECCS----CT--TCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred             EEeee----cC--cchhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECc
Confidence            87542    22  23457788999999887888875555568999999999999999983

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=95.81  E-value=0.077  Score=50.17  Aligned_cols=100  Identities=17%  Similarity=0.218  Sum_probs=66.4

Q ss_pred             HHHHHHHHHc--CCceEEEecCCCCH-HhHHhhHhcCCCCCeEEEEeeeCCCCCcccch-------hHHHHHHHHHhh--
Q 031554           32 QELVQRIKSK--GMRPGVALKPGTSV-EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP-------EMMDKVRSLRNR--   99 (157)
Q Consensus        32 ~~~i~~ir~~--g~~~gl~l~~~t~~-~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~-------~~~~ki~~l~~~--   99 (157)
                      .+.++.+|+.  ++.+++-+.+...+ ..+....+  .++|.|.+-+...|+++ .+..       ....-+.++++.  
T Consensus       981 ~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~--AGAD~IvVsG~eGGTga-sp~~~~~~~G~Pt~~aL~ev~~al~ 1057 (1479)
T 1ea0_A          981 AQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAK--ANADIILISGNSGGTGA-SPQTSIKFAGLPWEMGLSEVHQVLT 1057 (1479)
T ss_dssp             HHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHH--TTCSEEEEECTTCCCSS-EETTHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHH--cCCcEEEEcCCCCCCCC-CchhhhcCCchhHHHHHHHHHHHHH
Confidence            5788888887  66777766554433 33444443  58999998655544432 2211       122333333331  


Q ss_pred             ----CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          100 ----YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       100 ----~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                          ..+++|.+||||. ...+......|||.+-+|++.+
T Consensus      1058 ~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL 1097 (1479)
T 1ea0_A         1058 LNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASL 1097 (1479)
T ss_dssp             TTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHH
T ss_pred             HcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHH
Confidence                2469999999999 6999999999999999998753

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=95.81  E-value=0.073  Score=44.59  Aligned_cols=79  Identities=22%  Similarity=0.402  Sum_probs=57.7

Q ss_pred             eEEEecCCCC-HHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC
Q 031554           45 PGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG  123 (157)
Q Consensus        45 ~gl~l~~~t~-~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G  123 (157)
                      +|..+.+..+ .+.+..+++  .++|.|.+-+.+ |     .....++.++++++..+++++.+.++.+.+.+..+.++|
T Consensus       228 vga~ig~~~~~~~~a~~l~~--aGvd~v~i~~~~-G-----~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G  299 (494)
T 1vrd_A          228 VGAAVGTSPETMERVEKLVK--AGVDVIVIDTAH-G-----HSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAG  299 (494)
T ss_dssp             CEEEECSSTTHHHHHHHHHH--TTCSEEEECCSC-C-----SSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTT
T ss_pred             cccccCcCHhHHHHHHHHHH--hCCCEEEEEecC-C-----chHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcC
Confidence            4445544333 345566664  578998773221 2     234678889999998878999998899999999999999


Q ss_pred             CCEEEEcc
Q 031554          124 ANCIVAGS  131 (157)
Q Consensus       124 ad~vV~GS  131 (157)
                      ||.+++|.
T Consensus       300 ~d~I~v~~  307 (494)
T 1vrd_A          300 ADAVKVGV  307 (494)
T ss_dssp             CSEEEECS
T ss_pred             CCEEEEcC
Confidence            99999954

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=95.80  E-value=0.071  Score=40.82  Aligned_cols=120  Identities=19%  Similarity=0.193  Sum_probs=69.6

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc--hH----HHHHHHHHHcCCceEEEec--CCCCHHhHHhhHhc--CCCCCeEEEEee
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD--NW----QELVQRIKSKGMRPGVALK--PGTSVEEVYPLVEG--ANPVEMVLVMTV   76 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~--~~----~~~i~~ir~~g~~~gl~l~--~~t~~~~~~~~~~~--~~~~d~vl~m~v   76 (157)
                      .-++.+.+.|||-|-+|......  .+    ..+.+.++++|+..-+.+.  .-|+ +.+....++  -.++|+|=   +
T Consensus        92 ~e~~~Av~~GAdEID~vinig~~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~-e~i~~a~ria~eaGADfVK---T  167 (234)
T 1n7k_A           92 VEAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDD-KTLSLLVDSSRRAGADIVK---T  167 (234)
T ss_dssp             HHHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCH-HHHHHHHHHHHHTTCSEEE---S
T ss_pred             HHHHHHHHcCCCEEEEeccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCCH-HHHHHHHHHHHHhCCCEEE---e
Confidence            34678889999999999643221  11    3333444455664444432  1122 333222221  15899994   3


Q ss_pred             eCCCCC-cccchhHHHHHHH--HHhhCCCCcEEEEcCCC-HhhHHHHHHcCCC--EEEEccccc
Q 031554           77 EPGFGG-QKFMPEMMDKVRS--LRNRYPSLDIEVDGGLG-PSTIAEAASAGAN--CIVAGSSVF  134 (157)
Q Consensus        77 ~pG~~g-q~~~~~~~~ki~~--l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad--~vV~GSai~  134 (157)
                      .-||.+ ..   ..++-++.  +++... ++|-+.|||+ .+++..++++||+  +.-.|..||
T Consensus       168 sTG~~~~~g---At~~dv~l~~m~~~v~-v~VKaaGGirt~~~al~~i~aGa~RiG~S~g~~I~  227 (234)
T 1n7k_A          168 STGVYTKGG---DPVTVFRLASLAKPLG-MGVKASGGIRSGIDAVLAVGAGADIIGTSSAVKVL  227 (234)
T ss_dssp             CCSSSCCCC---SHHHHHHHHHHHGGGT-CEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHH
T ss_pred             CCCCCCCCC---CCHHHHHHHHHHHHHC-CCEEEecCCCCHHHHHHHHHcCccccchHHHHHHH
Confidence            345542 21   23333444  666544 8999999999 7889999999999  443334444

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*

Probab=95.73  E-value=0.42  Score=38.81  Aligned_cols=113  Identities=9%  Similarity=0.014  Sum_probs=75.6

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcC--CCCCeEEE
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGA--NPVEMVLV   73 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl~   73 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-.  .... .+.++++|+. |  +.+.+..|-....+...++++.+  ..+++|  
T Consensus       162 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~-~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--  238 (393)
T 2og9_A          162 PIDQLMVNASASIERGIGGIKLKVGQPDGALD-IARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWI--  238 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEEECCCSCHHHH-HHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCE--
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHH-HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE--
Confidence            57766654   457899999998653  2223 6778888885 4  55677777666666554444310  245554  


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV  128 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV  128 (157)
                              .|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.
T Consensus       239 --------E~P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~  286 (393)
T 2og9_A          239 --------EEPLDAYDHEGHAALALQF-DTPIATGEMLTSAAEHGDLIRHRAADYLM  286 (393)
T ss_dssp             --------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred             --------ECCCCcccHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHHCCCCCEEe
Confidence                    2444455566677777764 79999999996 68899888777 78773

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=95.71  E-value=0.24  Score=40.03  Aligned_cols=117  Identities=16%  Similarity=0.189  Sum_probs=76.5

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccC-CcchHHHHHHHHHHc-C-CceEEEecCCCCHHhHHhhHhc--CCCCCeEEEEe
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEI-SKDNWQELVQRIKSK-G-MRPGVALKPGTSVEEVYPLVEG--ANPVEMVLVMT   75 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~-g-~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl~m~   75 (157)
                      +|+.+.+   .+.+.|.+.+-+|.-. .... .+.++++|+. | +.+.+..|-....+...++++.  -..+++|-   
T Consensus       147 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~-~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE---  222 (384)
T 2pgw_A          147 TAEELARDAAVGHAQGERVFYLKVGRGEKLD-LEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIE---  222 (384)
T ss_dssp             SHHHHHHHHHHHHHTTCCEEEEECCSCHHHH-HHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE---
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECcCCCHHHH-HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEe---
Confidence            5666654   4467899999998642 2223 6788888886 4 4455555655566554444321  02456552   


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccc
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSS  132 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSa  132 (157)
                             |++.+..++-.+++++.. +++|..|+.+. .+.+.++++.| +|++.+.-.
T Consensus       223 -------qP~~~~~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~  273 (384)
T 2pgw_A          223 -------QPTVSWSIPAMAHVREKV-GIPIVADQAAFTLYDVYEICRQRAADMICIGPR  273 (384)
T ss_dssp             -------CCSCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred             -------CCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcch
Confidence                   344455566777777764 79999999997 78898887766 899877543

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=95.71  E-value=0.031  Score=43.71  Aligned_cols=74  Identities=18%  Similarity=0.217  Sum_probs=53.2

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +|.+..+.|.+  .+++.|-+.+-+.      |....++.++++|+.. +++ +.=|+.|++.++.+..++|||+|.+|.
T Consensus        73 ~p~~~A~~y~~--~GA~~isvltd~~------~f~Gs~~~l~~ir~~v-~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~  143 (272)
T 3qja_A           73 DPAKLAQAYQD--GGARIVSVVTEQR------RFQGSLDDLDAVRASV-SIPVLRKDFVVQPYQIHEARAHGADMLLLIV  143 (272)
T ss_dssp             CHHHHHHHHHH--TTCSEEEEECCGG------GHHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEEG
T ss_pred             CHHHHHHHHHH--cCCCEEEEecChh------hcCCCHHHHHHHHHhC-CCCEEECccccCHHHHHHHHHcCCCEEEEec
Confidence            34566666665  6899997765443      3334566777777764 444 456788888899999999999999998


Q ss_pred             cccC
Q 031554          132 SVFG  135 (157)
Q Consensus       132 ai~~  135 (157)
                      +...
T Consensus       144 a~l~  147 (272)
T 3qja_A          144 AALE  147 (272)
T ss_dssp             GGSC
T ss_pred             ccCC
Confidence            7664

>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*

Probab=95.62  E-value=0.21  Score=38.66  Aligned_cols=116  Identities=12%  Similarity=0.108  Sum_probs=73.9

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      +|......+..+| |.||+|..-...-| .+-+..+++. ..+.=+.++|....-.+  .++  -+++.|.+.   |-..
T Consensus        26 dpv~aA~~ae~aG-dgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~emi~i--al~--~kP~~vtLV---PEkr   97 (260)
T 3o6c_A           26 DLLEAAFIVARHG-DQITLHVREDRRHAQDFDLENIIKFCKSPVNLECALNDEILNL--ALK--LKPHRVTLV---PEKR   97 (260)
T ss_dssp             CHHHHHHHHHHHS-SEEEEECCTTCSSSCHHHHHHHHHHCSSCEEEEECSCHHHHHH--HHH--HCCSEEEEC---CCSG
T ss_pred             CHHHHHHHHHHhC-CeEEEeeCCCcccCCHHHHHHHHHHcCCCEEeecCCCHHHHHH--HHH--cCCCEEEEC---CCCC
Confidence            5777778888999 99999976533211 3445555554 67777788765444332  222  268999775   4322


Q ss_pred             -------Ccccch-hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554           82 -------GQKFMP-EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        82 -------gq~~~~-~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                             |-.+.. ..-+-|+++++..-.+.+-+|  -.++.+....+.|||.|=+
T Consensus        98 eE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFID--pd~~qi~aA~~~GAd~IEL  151 (260)
T 3o6c_A           98 EELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN--PSLEDIEKSKILKAQFIEL  151 (260)
T ss_dssp             GGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHHHTTCSEEEE
T ss_pred             CccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCCCEEEE
Confidence                   211111 233347777776545566677  5678899999999999877

>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A

Probab=95.61  E-value=0.15  Score=40.10  Aligned_cols=125  Identities=14%  Similarity=0.216  Sum_probs=77.3

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH-----cC------------------------CceEEEecCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKS-----KG------------------------MRPGVALKPGTS   54 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~-----~g------------------------~~~gl~l~~~t~   54 (157)
                      +|. .++.+.++|++.|.++.-...+.+.++.+.++.     +|                        ..+++.|....-
T Consensus       100 d~~-di~~~ld~ga~~ImlP~V~saeea~~~~~~~~~~p~G~Rg~g~~~~ra~~~g~~~~y~~~~~~~~~vi~mIEt~~a  178 (287)
T 2v5j_A          100 DPV-QIKQLLDVGTQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREA  178 (287)
T ss_dssp             CHH-HHHHHHHTTCCEEEESCCCSHHHHHHHHHHTSCTTTSCCCGGGTTTGGGTTTTSTTHHHHHHHHCEEEEEECSHHH
T ss_pred             CHH-HHHHHHhCCCCEEEeCCCCCHHHHHHHHHHhccCccCccccccchhhhhhccchhhhHhhcCCCcEEEEEECcHHH
Confidence            454 567778899999999954333222555554431     11                        446666743334


Q ss_pred             HHhHHhhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHH---HhhCCCCcEEEEcCCCHhhHHHHHHcCCCEE
Q 031554           55 VEEVYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSL---RNRYPSLDIEVDGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        55 ~~~~~~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l---~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~v  127 (157)
                      ++.+.+++.. +.+|.+.+.+-    .-|..++...|..+.-++++   .+. .++++.+-.+ +++.++.+++.|.+.+
T Consensus       179 v~n~deIaa~-~~vD~l~iG~~DLs~~lg~~~~~~~p~v~~a~~~iv~aara-aG~~~gv~~~-d~~~a~~~~~~G~~~~  255 (287)
T 2v5j_A          179 MKNLPQILDV-EGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRE-SGKAPGILIA-NEQLAKRYLELGALFV  255 (287)
T ss_dssp             HHTHHHHHTS-TTEEEEEECHHHHHHHTTSTTCCCSHHHHHHHHHHHHHHHH-TTSEEEEECC-CHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHhCc-CCCCEEEECHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH-cCCeeEEecC-CHHHHHHHHHhCCCEE
Confidence            4667787743 57899988643    23555555556554433333   222 2455544333 7889999999999999


Q ss_pred             EEccc
Q 031554          128 VAGSS  132 (157)
Q Consensus       128 V~GSa  132 (157)
                      .+|+.
T Consensus       256 s~~~d  260 (287)
T 2v5j_A          256 AVGVD  260 (287)
T ss_dssp             EEEEH
T ss_pred             EECcH
Confidence            99975

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=95.53  E-value=0.033  Score=42.88  Aligned_cols=114  Identities=18%  Similarity=0.209  Sum_probs=65.8

Q ss_pred             HHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHc--CCceEEEecCC-CCHHhHHhhHhc--CCCCCeEEEEee
Q 031554            8 YVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSK--GMRPGVALKPG-TSVEEVYPLVEG--ANPVEMVLVMTV   76 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~--g~~~gl~l~~~-t~~~~~~~~~~~--~~~~d~vl~m~v   76 (157)
                      -.+.+.+.|||-|-+|.....      +.+.+-|+.+++.  +..+-+.+... -..+.+....++  -.++|+|=   +
T Consensus       100 Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVK---T  176 (239)
T 3ngj_A          100 ETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVK---T  176 (239)
T ss_dssp             HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEE---C
T ss_pred             HHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEE---C
Confidence            456788899999999965321      1225555555554  32222222111 122333333110  14899994   3


Q ss_pred             eCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      ..||+...   ..++.++.+|+. .+++.|-+.|||+ .+++..++++||+-+
T Consensus       177 STGf~~gg---At~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aGA~ri  226 (239)
T 3ngj_A          177 STGFGTHG---ATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGASRI  226 (239)
T ss_dssp             CCSSSSCC---CCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTTEEEE
T ss_pred             CCCCCCCC---CCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhcccce
Confidence            44654222   223344444443 3568899999999 699999999999955

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=95.51  E-value=0.061  Score=43.44  Aligned_cols=113  Identities=16%  Similarity=0.237  Sum_probs=70.8

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CC-ceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GM-RPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~-~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      ....+.++|.=. .++...  .+ ++...++++.  .. .+++.+.... ..+.+..+++...++|.+.+-. ..|    
T Consensus        73 lA~Ava~~Gglg-~i~~~~--s~-e~~~~~i~~~p~~l~~v~~~~g~~~~~~~~~~~l~~~~~g~~~i~i~~-~~g----  143 (351)
T 2c6q_A           73 MAKVLCKFSLFT-AVHKHY--SL-VQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQVKYICLDV-ANG----  143 (351)
T ss_dssp             HHHHHHHTTCEE-ECCTTC--CH-HHHHHHHHHCGGGCTTEEEEECSSHHHHHHHHHHHHHCTTCCEEEEEC-SCT----
T ss_pred             HHHHHHHCCCEE-EEcCCC--CH-HHHHHHHhhCchhhheeEeecCCChHHHHHHHHHHhccCCCCEEEEEe-cCC----
Confidence            555677777433 334432  22 5666666542  22 2455543211 2344555552102688776532 222    


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                       ..+..++.|+++|+..++++|.+.+..+.+.+..+.++|||+|++|
T Consensus       144 -~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~  189 (351)
T 2c6q_A          144 -YSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVG  189 (351)
T ss_dssp             -TBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             -CcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence             2345788899999987788888888889999999999999999885

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=95.50  E-value=0.31  Score=32.50  Aligned_cols=104  Identities=15%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHh-cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVE-GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGG  110 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~-~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGG  110 (157)
                      .+-+.+.+.|..+..+   .+..+.+..+.+ . ..+|.|++-...|+..       .++-++++++..++.+|. +.+.
T Consensus        18 ~l~~~l~~~g~~v~~~---~~~~~a~~~~~~~~-~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~ls~~   86 (143)
T 3jte_A           18 NIKFLLEIDGNEVLTA---SSSTEGLRIFTENC-NSIDVVITDMKMPKLS-------GMDILREIKKITPHMAVIILTGH   86 (143)
T ss_dssp             HHHHHHHHTTCEEEEE---SSHHHHHHHHHHTT-TTCCEEEEESCCSSSC-------HHHHHHHHHHHCTTCEEEEEECT
T ss_pred             HHHHHHHhCCceEEEe---CCHHHHHHHHHhCC-CCCCEEEEeCCCCCCc-------HHHHHHHHHHhCCCCeEEEEECC
Confidence            3444566677654422   233333333321 1 4789888755455533       355677777777777654 5555


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      -+.+....+.++||+.++     .+.-++.+....+++.++.
T Consensus        87 ~~~~~~~~~~~~g~~~~l-----~kp~~~~~l~~~l~~~~~~  123 (143)
T 3jte_A           87 GDLDNAILAMKEGAFEYL-----RKPVTAQDLSIAINNAINR  123 (143)
T ss_dssp             TCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCcceeE-----eCCCCHHHHHHHHHHHHHH
Confidence            667888899999999874     4444667777777766654

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=95.43  E-value=0.34  Score=37.24  Aligned_cols=135  Identities=13%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             hHHHHHHHHhCCCCEEEE-----ccc--CCcchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            5 PLDYVEPLGKAGASGFTF-----HVE--ISKDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~v-----h~e--~~~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      -.+.++.+.++|+|++++     |.-  ....  ..+++.+|+..  ...-+-+...+|...++.+.+  .++|+|.+..
T Consensus        42 L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G--~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~--aGAd~itvH~  117 (246)
T 3inp_A           42 LGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG--PMVLKALRDYGITAGMDVHLMVKPVDALIESFAK--AGATSIVFHP  117 (246)
T ss_dssp             HHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC--HHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHH--HTCSEEEECG
T ss_pred             HHHHHHHHHHcCCCEEEEEecCCCcCcchhcC--HHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHH--cCCCEEEEcc
Confidence            356788889999999998     321  1112  47899999876  444555777888888888876  4899997741


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc--ccCC----CCHHHHHHHHHHH
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS--VFGA----PEPAHVISLMRKS  149 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa--i~~~----~d~~~~~~~l~~~  149 (157)
                       ++   .    +...+-++++|+..-..-+.+--+-..+.+..+.. .+|.+.+.|-  =|..    ++..+.++++++.
T Consensus       118 -Ea---~----~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~-~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~  188 (246)
T 3inp_A          118 -EA---S----EHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVES-NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKW  188 (246)
T ss_dssp             -GG---C----SCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGG-GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHH
T ss_pred             -cc---c----hhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHh-cCCEEEEeeecCCCCCcccchHHHHHHHHHHHH
Confidence             11   1    12344566666653222333333344566766666 6898877652  2322    4556777777777


Q ss_pred             HHH
Q 031554          150 VED  152 (157)
Q Consensus       150 ~~~  152 (157)
                      +.+
T Consensus       189 ~~~  191 (246)
T 3inp_A          189 ISS  191 (246)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=95.42  E-value=0.087  Score=40.28  Aligned_cols=90  Identities=19%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           31 WQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        31 ~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                      +..+++.+++.++-+.+-. ++++..+..+.+++  .+++.|-+-..         .+..++-|+++++.+++..|.++.
T Consensus        24 m~~~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~--gGi~~iEvt~~---------t~~a~e~I~~l~~~~~~~~iGaGT   92 (232)
T 4e38_A           24 MSTINNQLKALKVIPVIAIDNAEDIIPLGKVLAE--NGLPAAEITFR---------SDAAVEAIRLLRQAQPEMLIGAGT   92 (232)
T ss_dssp             HHHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHH--TTCCEEEEETT---------STTHHHHHHHHHHHCTTCEEEEEC
T ss_pred             HHHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHH--CCCCEEEEeCC---------CCCHHHHHHHHHHhCCCCEEeECC
Confidence            4678889999887666654 34455556666665  68888876211         234677888888887887777766


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcc
Q 031554          110 GLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      =++.++++.++++|||.++++.
T Consensus        93 Vlt~~~a~~Ai~AGA~fIvsP~  114 (232)
T 4e38_A           93 ILNGEQALAAKEAGATFVVSPG  114 (232)
T ss_dssp             CCSHHHHHHHHHHTCSEEECSS
T ss_pred             cCCHHHHHHHHHcCCCEEEeCC
Confidence            6678999999999999998765

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=95.39  E-value=0.084  Score=39.99  Aligned_cols=89  Identities=20%  Similarity=0.295  Sum_probs=64.3

Q ss_pred             HHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554           32 QELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG  110 (157)
                      .++++.++++++-+.+-. ++++-++.++.+++  .+++.|.+-..         .+...+.++++++.++++.+.++-=
T Consensus         8 ~~~~~~l~~~~ii~vir~~~~~~~~~~~~al~~--gGv~~iel~~k---------~~~~~~~i~~l~~~~~~l~vgaGtv   76 (224)
T 1vhc_A            8 QQIIEKLRELKIVPVIALDNADDILPLADTLAK--NGLSVAEITFR---------SEAAADAIRLLRANRPDFLIAAGTV   76 (224)
T ss_dssp             HHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHH--TTCCEEEEETT---------STTHHHHHHHHHHHCTTCEEEEESC
T ss_pred             HHHHHHHHHCCeEEEEeCCCHHHHHHHHHHHHH--cCCCEEEEecc---------CchHHHHHHHHHHhCcCcEEeeCcE
Confidence            567888888887665543 44444566677775  57999987411         2345678888888887777766654


Q ss_pred             CCHhhHHHHHHcCCCEEEEcc
Q 031554          111 LGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GS  131 (157)
                      ++.+.+....++|||.+++|.
T Consensus        77 l~~d~~~~A~~aGAd~v~~p~   97 (224)
T 1vhc_A           77 LTAEQVVLAKSSGADFVVTPG   97 (224)
T ss_dssp             CSHHHHHHHHHHTCSEEECSS
T ss_pred             eeHHHHHHHHHCCCCEEEECC
Confidence            468999999999999999884

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=95.39  E-value=0.18  Score=38.47  Aligned_cols=113  Identities=16%  Similarity=0.208  Sum_probs=67.3

Q ss_pred             HHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHc--CCceEEEecC------CCCHHh--HHhhHhcCCCCCeE
Q 031554            8 YVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSK--GMRPGVALKP------GTSVEE--VYPLVEGANPVEMV   71 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~--g~~~gl~l~~------~t~~~~--~~~~~~~~~~~d~v   71 (157)
                      -.+.+.+.|||-|-++....      .+.+.+.++.+++.  |...-+.+.+      .|+.+.  +.++... .++|+|
T Consensus        85 E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~-aGADfV  163 (231)
T 3ndo_A           85 EAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARD-AGADFV  163 (231)
T ss_dssp             HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHH-TTCSEE
T ss_pred             HHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHH-HCcCEE
Confidence            45678899999999996432      12225556666654  3323323321      132221  2222222 589999


Q ss_pred             EEEeeeCCCC-CcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           72 LVMTVEPGFG-GQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        72 l~m~v~pG~~-gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      =   ..-||+ ..   ..+++-++.+++. .+++.|-+.|||+ .+++..++++||+-+
T Consensus       164 K---TSTGf~~~~---gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~Ri  216 (231)
T 3ndo_A          164 K---TSTGFHPSG---GASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRL  216 (231)
T ss_dssp             E---CCCSCCTTC---SCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             E---cCCCCCCCC---CCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcchhc
Confidence            4   344654 11   1234445555553 3578999999999 699999999999955

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=95.37  E-value=0.13  Score=48.88  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=64.8

Q ss_pred             HHHHHHHHHc--CCceEEEecCCCCH-HhHHhhHhcCCCCCeEEEEeeeCCCCCcccc------hhHHHHHHHHHhh---
Q 031554           32 QELVQRIKSK--GMRPGVALKPGTSV-EEVYPLVEGANPVEMVLVMTVEPGFGGQKFM------PEMMDKVRSLRNR---   99 (157)
Q Consensus        32 ~~~i~~ir~~--g~~~gl~l~~~t~~-~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~------~~~~~ki~~l~~~---   99 (157)
                      .+.++.+|+.  ++.+++-+.+...+ ..+..+.+  .++|.|.+-+...|+++....      .....-+.++++.   
T Consensus      1016 ~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~k--AGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~ 1093 (1520)
T 1ofd_A         1016 AQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAK--ANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLME 1093 (1520)
T ss_dssp             HHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHH--TTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHHH--cCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHh
Confidence            5788888887  56667765554333 33444443  589999886555443322110      0112233333221   


Q ss_pred             ---CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          100 ---YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       100 ---~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                         ..+++|.+||||. ...+......|||.+-+|++++
T Consensus      1094 ~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL 1132 (1520)
T 1ofd_A         1094 NQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAM 1132 (1520)
T ss_dssp             TTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHH
T ss_pred             cCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHH
Confidence               2368999999999 6999999999999999998753

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=95.31  E-value=0.35  Score=39.00  Aligned_cols=118  Identities=11%  Similarity=0.109  Sum_probs=76.9

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccC-CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEI-SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-. .... .+.++++|+. |  +.+.+..|-....+...++++.+...+. .+   
T Consensus       145 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~i---  219 (379)
T 2rdx_A          145 SEAETRAELARHRAAGYRQFQIKVGADWQSD-IDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-IL---  219 (379)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEEECCSCHHHH-HHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EE---
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeccCCHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EE---
Confidence            56666544   467899999999653 2233 6788888875 4  5566667766677665555542244443 22   


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccccc
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVF  134 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai~  134 (157)
                      +     |++.  .++-.+++++.. +++|..|+.++ .+.+.++++.| +|++.+--.-.
T Consensus       220 E-----~P~~--~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~  271 (379)
T 2rdx_A          220 E-----QPCR--SYEECQQVRRVA-DQPMKLDECVTGLHMAQRIVADRGAEICCLKISNL  271 (379)
T ss_dssp             E-----CCSS--SHHHHHHHHTTC-CSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTT
T ss_pred             e-----CCcC--CHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecccc
Confidence            2     2332  455667777653 79999999997 68888876665 89987764433

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=95.20  E-value=0.12  Score=50.61  Aligned_cols=124  Identities=18%  Similarity=0.252  Sum_probs=81.3

Q ss_pred             HHHHHHHhCCCCE--EEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH--HhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554            7 DYVEPLGKAGASG--FTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV--EEVYPLVEGANPVEMVLVMTVEPGFG-   81 (157)
Q Consensus         7 ~~i~~~~~~gad~--v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~--~~~~~~~~~~~~~d~vl~m~v~pG~~-   81 (157)
                      .+++.+.+.|+..  |++..-.+ .. +..++++.+.|+++.- +.|.+..  .......+  .++|.++++.++=+-+ 
T Consensus       664 ~~~~~~~~~gv~i~~v~~~ag~p-~~-~~~~~~i~~lG~~vi~-~~~~~~~a~~~~~~~~~--~g~d~~ii~~~~G~eaG  738 (2051)
T 2uv8_G          664 PLIKELRSKGYPIQFLTIGAGVP-SL-EVASEYIETLGLKYLG-LKPGSIDAISQVINIAK--AHPNFPIALQWTGGRGG  738 (2051)
T ss_dssp             HHHHHHHHTTCSEEEEEEESSCC-CH-HHHHHHHHHSCCSCEE-ECCCSHHHHHHHHHHHH--HSTTSCEEEEECCSSCS
T ss_pred             HHHHHHHHcCCCcceEEecCCCC-ch-hhHHHHHHHcCCEEEE-ecCchHHHHHHHHHHHH--hCCCceeEEEEEccCcC
Confidence            6788889999988  88776532 33 5666777777887653 3334322  22233322  3789965555442211 


Q ss_pred             Cc----ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH-----------HcCCCEEEEcccccCC
Q 031554           82 GQ----KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-----------SAGANCIVAGSSVFGA  136 (157)
Q Consensus        82 gq----~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~-----------~~Gad~vV~GSai~~~  136 (157)
                      |.    .+....+.-+.++++. .++++.+.|||. .+.+....           ..|||++-+||.+.-+
T Consensus       739 GH~g~~d~~~~~l~l~~~v~~~-~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t  808 (2051)
T 2uv8_G          739 GHHSFEDAHTPMLQMYSKIRRH-PNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIA  808 (2051)
T ss_dssp             EECCSCCSSHHHHHHHHHHTTC-TTBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTS
T ss_pred             CCCCcccccccHHHHHHHHHhc-CCceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhC
Confidence            22    1223456667887776 379999999999 57777777           8999999999987643

>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A

Probab=95.18  E-value=0.3  Score=37.79  Aligned_cols=125  Identities=11%  Similarity=0.151  Sum_probs=76.6

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH-----------------c------------CCceEEEecCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKS-----------------K------------GMRPGVALKPGTS   54 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~-----------------~------------g~~~gl~l~~~t~   54 (157)
                      +|. .+..+.++|++.|.++.-...+.+.++.+.++.                 +            ...+++.|....-
T Consensus        79 ~~~-~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~~~~~p~G~Rg~~~~~~~~~~~g~~~~y~~~~~~~~~v~~~IEt~~a  157 (267)
T 2vws_A           79 SKP-LIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTA  157 (267)
T ss_dssp             CHH-HHHHHHHTTCCEEEECCCCSHHHHHHHHHHTSCTTTSCCCSCGGGSGGGGGGTSTTHHHHHHHHCEEEEECCSHHH
T ss_pred             CHH-HHHHHHHhCCCEEEeCCCCCHHHHHHHHHHHcCCCCCccccccchhhhhhcCcchhhhhhcccccEEEEEECCHHH
Confidence            343 567778899999999854333222555555431                 0            1345556633334


Q ss_pred             HHhHHhhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHH---HhhCCCCcEEEEcCCCHhhHHHHHHcCCCEE
Q 031554           55 VEEVYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSL---RNRYPSLDIEVDGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        55 ~~~~~~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l---~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~v  127 (157)
                      ++.+.+++.. +.+|.+.+.+-    .-|..++...|..+.-++++   .+. .++++.+-.+ +++.++.+++.|.+.+
T Consensus       158 v~~~~eIa~~-~gvd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~a-aG~~~~v~~~-d~~~a~~~~~~G~~~~  234 (267)
T 2vws_A          158 LDNLDEILDV-EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRA-AGKAAGFLAV-APDMAQQCLAWGANFV  234 (267)
T ss_dssp             HHTHHHHHTS-TTCCEEEECHHHHHHHTTCSSSCCTHHHHHHHHHHHHHHHH-TTCEEEEECS-SHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHhCC-CCCCEEEEChHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH-hCCeEEEecC-CHHHHHHHHHCCCCEE
Confidence            4567777744 56999988643    34555565556554433333   222 2455544333 7899999999999999


Q ss_pred             EEccc
Q 031554          128 VAGSS  132 (157)
Q Consensus       128 V~GSa  132 (157)
                      .+|+.
T Consensus       235 s~~~d  239 (267)
T 2vws_A          235 AVGVD  239 (267)
T ss_dssp             EEEEH
T ss_pred             EEchH
Confidence            99974

>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A

Probab=95.15  E-value=0.62  Score=38.24  Aligned_cols=113  Identities=10%  Similarity=0.026  Sum_probs=75.4

Q ss_pred             cChHHHHHHH---HhCCCCEEEEcccCC--------cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--
Q 031554            3 TNPLDYVEPL---GKAGASGFTFHVEIS--------KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--   66 (157)
Q Consensus         3 ~~p~~~i~~~---~~~gad~v~vh~e~~--------~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--   66 (157)
                      .+|+.+.+.+   .+.|.+.+=++.-..        ... .+.++++|+. |  +.+.+..|-....+...++++.+.  
T Consensus       178 ~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~d-ie~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~  256 (412)
T 3stp_A          178 GSIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMREN-LKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPY  256 (412)
T ss_dssp             CCHHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHH-HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHH-HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence            3566666554   567999999996432        233 5677888875 4  455666676677766544443102  


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEE
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCI  127 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~v  127 (157)
                      .++++          .|++.+..++-++++++. .+++|+.|+.+. ...+.++++.| +|++
T Consensus       257 ~i~~i----------EeP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~li~~~a~D~v  308 (412)
T 3stp_A          257 EPRWL----------EEPVIADDVAGYAELNAM-NIVPISGGEHEFSVIGCAELINRKAVSVL  308 (412)
T ss_dssp             CCSEE----------ECCSCTTCHHHHHHHHHT-CSSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred             CCCEE----------ECCCCcccHHHHHHHHhC-CCCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence            34444          244555566777778776 479999999998 68899888876 7877

>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12

Probab=95.14  E-value=0.095  Score=42.97  Aligned_cols=106  Identities=17%  Similarity=0.230  Sum_probs=75.5

Q ss_pred             HHHHHHHhCCCCEEEEcc---cCC----cchHHHHHHHHHHcCCceEEEecCCCCH------HhHHhhHhcCCCCCeEEE
Q 031554            7 DYVEPLGKAGASGFTFHV---EIS----KDNWQELVQRIKSKGMRPGVALKPGTSV------EEVYPLVEGANPVEMVLV   73 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~---e~~----~~~~~~~i~~ir~~g~~~gl~l~~~t~~------~~~~~~~~~~~~~d~vl~   73 (157)
                      .|++.+.+.|...|..-.   |..    ..-+.++++.++++|+++.+.++|.+--      +.+..+.++  +++.+  
T Consensus        45 ~Yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~~~~Lg~s~~dl~~f~~l--Gi~gL--  120 (385)
T 1x7f_A           45 AYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAEL--GADGI--  120 (385)
T ss_dssp             HHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHH--TCSEE--
T ss_pred             HHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHc--CCCEE--
Confidence            699999999998776543   211    1223678899999999999999997632      344455443  67766  


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCC
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN  125 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad  125 (157)
                       -++-||+++        .+.++....+++.|+.=-..+.+.+..+.+.|+|
T Consensus       121 -RLD~Gf~~~--------eia~ls~n~~glkIeLNASt~~~~l~~l~~~~~n  163 (385)
T 1x7f_A          121 -RLDVGFDGL--------TEAKMTNNPYGLKIELNVSNDIAYLENILSHQAN  163 (385)
T ss_dssp             -EESSCCSSH--------HHHHHTTCTTCCEEEEETTSCSSHHHHHTTSSCC
T ss_pred             -EEcCCCCHH--------HHHHHhcCCCCCEEEEeCcCCHHHHHHHHHcCCC
Confidence             446788763        3344444445689999999888999999999998

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=95.10  E-value=0.71  Score=34.48  Aligned_cols=114  Identities=10%  Similarity=0.089  Sum_probs=68.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEccc------CCcchHHHHHHHHHHcC-CceE--EEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554            4 NPLDYVEPLGKAGASGFTFHVE------ISKDNWQELVQRIKSKG-MRPG--VALKPGTSVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e------~~~~~~~~~i~~ir~~g-~~~g--l~l~~~t~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      +-.+.++.+.+.|+|++++-.-      ..... .+.++.+|+.- ....  +.+  ++|.+.++.+.+  .++|+|.+.
T Consensus        20 ~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~-~~~~~~lr~~~~~~~~v~lmv--~d~~~~i~~~~~--agad~v~vH   94 (228)
T 1h1y_A           20 NLAAEADRMVRLGADWLHMDIMDGHFVPNLTIG-APVIQSLRKHTKAYLDCHLMV--TNPSDYVEPLAK--AGASGFTFH   94 (228)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBC-HHHHHHHHTTCCSEEEEEEES--SCGGGGHHHHHH--HTCSEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEEEecCCcCcchhhC-HHHHHHHHhhcCCcEEEEEEe--cCHHHHHHHHHH--cCCCEEEEC
Confidence            3456678888999999987621      11122 47888888763 3334  555  456555555554  379999875


Q ss_pred             eeeCCCCCcccchhH-HHHHHHHHhhCCCCcEEEEc--CCCHhhHHHHHHc--CCCEEEEccc
Q 031554           75 TVEPGFGGQKFMPEM-MDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASA--GANCIVAGSS  132 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~-~~ki~~l~~~~~~~~I~vdG--GI~~~~i~~~~~~--Gad~vV~GSa  132 (157)
                      .-.      .  +.. .+.++++++.  ++.+.+.=  .-..+.+..+...  ++|.+.++|.
T Consensus        95 ~~~------~--~~~~~~~~~~i~~~--g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv  147 (228)
T 1h1y_A           95 IEV------S--RDNWQELIQSIKAK--GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTV  147 (228)
T ss_dssp             GGG------C--TTTHHHHHHHHHHT--TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESS
T ss_pred             CCC------c--ccHHHHHHHHHHHc--CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEee
Confidence            221      1  122 3445666654  44444433  3234667777766  9999988764

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=95.09  E-value=0.35  Score=39.13  Aligned_cols=114  Identities=9%  Similarity=0.074  Sum_probs=75.5

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccC-CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhc--CCCCCeEEEE
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEI-SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEG--ANPVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl~m   74 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-. .... .+.++.+|+. |  +.+.+..|-....+...++++.  -..+++|   
T Consensus       164 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i---  239 (388)
T 2nql_A          164 TLKARGELAKYWQDRGFNAFKFATPVADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFA---  239 (388)
T ss_dssp             SHHHHHHHHHHHHHTTCCEEEEEGGGCTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCE---
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEE---
Confidence            56666644   457899999998542 2233 5778888873 4  5566666766666554444431  0245554   


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                             .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus       240 -------EqP~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~i  288 (388)
T 2nql_A          240 -------EAPVWTEDIAGLEKVSKNT-DVPIAVGEEWRTHWDMRARIERCRIAIVQP  288 (388)
T ss_dssp             -------ECCSCTTCHHHHHHHHTSC-CSCEEECTTCCSHHHHHHHHTTSCCSEECC
T ss_pred             -------ECCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEe
Confidence                   2445555677777777764 79999999997 78898888776 788754

>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}

Probab=95.08  E-value=0.47  Score=34.97  Aligned_cols=99  Identities=18%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGL  111 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI  111 (157)
                      +-..++.+|.++- .+.++.|.+.+....+. ..+|.|.+-+..+.     ..+...+-++++++..  ++++|.+.|..
T Consensus       108 va~~l~~~G~~v~-~LG~~vp~~~l~~~~~~-~~~d~v~lS~~~~~-----~~~~~~~~i~~l~~~~~~~~~~v~vGG~~  180 (210)
T 1y80_A          108 VAMMLESGGFTVY-NLGVDIEPGKFVEAVKK-YQPDIVGMSALLTT-----TMMNMKSTIDALIAAGLRDRVKVIVGGAP  180 (210)
T ss_dssp             HHHHHHHTTCEEE-ECCSSBCHHHHHHHHHH-HCCSEEEEECCSGG-----GTHHHHHHHHHHHHTTCGGGCEEEEESTT
T ss_pred             HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHH-cCCCEEEEeccccc-----cHHHHHHHHHHHHhcCCCCCCeEEEECCC
Confidence            3344567787643 46678888877655543 48899887544321     2345555677777764  46999998876


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      -.+...  .+.|||.+        .+|..++.+..++.
T Consensus       181 ~~~~~~--~~~gad~~--------~~da~~av~~~~~l  208 (210)
T 1y80_A          181 LSQDFA--DEIGADGY--------APDAASATELCRQL  208 (210)
T ss_dssp             CCHHHH--HHHTCSEE--------CSSHHHHHHHHHHH
T ss_pred             CCHHHH--HHcCCeEE--------ECCHHHHHHHHHHH
Confidence            543332  45799976        57777777776654

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A

Probab=95.01  E-value=0.8  Score=36.49  Aligned_cols=116  Identities=10%  Similarity=0.146  Sum_probs=75.4

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhc--CCCCCeEEE
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEG--ANPVEMVLV   73 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl~   73 (157)
                      +|+.+++   .+.+.|.+.+-+|.-.  .... .+.++.+|+. |  +.+.+..|-....+...++++.  -..++++  
T Consensus       144 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--  220 (359)
T 1mdl_A          144 GVKLATERAVTAAELGFRAVKTRIGYPALDQD-LAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWI--  220 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCCSSHHHH-HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCE--
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--
Confidence            4555554   4467899999999643  2223 6778888874 4  5556666666666554444321  0245555  


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS  131 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS  131 (157)
                              .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+.-
T Consensus       221 --------E~P~~~~~~~~~~~l~~~~-~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~  271 (359)
T 1mdl_A          221 --------EEPTLQHDYEGHQRIQSKL-NVPVQMGENWLGPEEMFKALSIGACRLAMPDA  271 (359)
T ss_dssp             --------ECCSCTTCHHHHHHHHHTC-SSCEEECTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred             --------ECCCChhhHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHcCCCCEEeecc
Confidence                    2445555667777777764 79999999996 78888887766 78886543

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=94.99  E-value=0.12  Score=39.21  Aligned_cols=89  Identities=16%  Similarity=0.196  Sum_probs=64.6

Q ss_pred             HHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554           32 QELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG  110 (157)
                      ..+++.++++++-+.+-. ++++.++.++.+++  .+++.|.+-.-         .+...+.++++++.++++.+.++-=
T Consensus        17 ~~~~~~l~~~~ii~V~r~~~~~~~~~~~~al~~--gGv~~iel~~k---------~~~~~~~i~~l~~~~~~~~igagtv   85 (225)
T 1mxs_A           17 ARIDAICEKARILPVITIAREEDILPLADALAA--GGIRTLEVTLR---------SQHGLKAIQVLREQRPELCVGAGTV   85 (225)
T ss_dssp             HHHHHHHHHHSEEEEECCSCGGGHHHHHHHHHH--TTCCEEEEESS---------STHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             HHHHHHHHHCCEEEEEeCCCHHHHHHHHHHHHH--CCCCEEEEecC---------CccHHHHHHHHHHhCcccEEeeCeE
Confidence            567788888886655533 34444566777775  57999987411         2356677888888888877777665


Q ss_pred             CCHhhHHHHHHcCCCEEEEcc
Q 031554          111 LGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GS  131 (157)
                      ++.+.+....++|||.+++|.
T Consensus        86 l~~d~~~~A~~aGAd~v~~p~  106 (225)
T 1mxs_A           86 LDRSMFAAVEAAGAQFVVTPG  106 (225)
T ss_dssp             CSHHHHHHHHHHTCSSEECSS
T ss_pred             eeHHHHHHHHHCCCCEEEeCC
Confidence            667999999999999999884

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=94.99  E-value=0.23  Score=40.54  Aligned_cols=78  Identities=22%  Similarity=0.515  Sum_probs=54.8

Q ss_pred             eEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC
Q 031554           45 PGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG  123 (157)
Q Consensus        45 ~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G  123 (157)
                      +++.+.... ..+.+..+++  .++|.|.+   +++.+   .....++.|+++|+..++++|.+.++.+.+.+..+.++|
T Consensus       144 ~~~~i~~~~~~~~~a~~~~~--~G~d~i~i---~~~~g---~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~G  215 (404)
T 1eep_A          144 VGAAVSIDIDTIERVEELVK--AHVDILVI---DSAHG---HSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVG  215 (404)
T ss_dssp             CEEEECSCTTHHHHHHHHHH--TTCSEEEE---CCSCC---SSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTT
T ss_pred             EEEEeCCChhHHHHHHHHHH--CCCCEEEE---eCCCC---ChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcC
Confidence            455554322 2344555554  57898876   33322   234577788899988778888887778899999999999


Q ss_pred             CCEEEEc
Q 031554          124 ANCIVAG  130 (157)
Q Consensus       124 ad~vV~G  130 (157)
                      ||.|++|
T Consensus       216 ad~I~vg  222 (404)
T 1eep_A          216 ADCLKVG  222 (404)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9999994

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=94.99  E-value=0.31  Score=45.25  Aligned_cols=115  Identities=16%  Similarity=0.166  Sum_probs=82.1

Q ss_pred             HHHHHHHHhCCCCEEEEcc--cCCcchHHHHHHHHHHcCCceEEEecCC----------CCHH----hHHhhHhcCCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHV--EISKDNWQELVQRIKSKGMRPGVALKPG----------TSVE----EVYPLVEGANPVE   69 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~--e~~~~~~~~~i~~ir~~g~~~gl~l~~~----------t~~~----~~~~~~~~~~~~d   69 (157)
                      ..+++.+.++|+|.+.+-.  +..+.. ...++++++.|..+-.+++-.          ++.+    .++.+.+  .++|
T Consensus       648 ~~~i~~a~~~g~d~irif~sl~~~~~~-~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~--~Ga~  724 (1165)
T 2qf7_A          648 KYFVRQAAKGGIDLFRVFDCLNWVENM-RVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEK--AGAH  724 (1165)
T ss_dssp             HHHHHHHHHHTCCEEEEECTTCCGGGG-HHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHH--TTCS
T ss_pred             HHHHHHHHhcCcCEEEEEeeHHHHHHH-HHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHH--cCCC
Confidence            3678999999999977752  222334 889999999998877665321          2333    3344443  4788


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV  128 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV  128 (157)
                      .|.+    +.+.|-.......+.++.+++.. +++|.+    |-|....|.-..+++|||.|=
T Consensus       725 ~i~l----~DT~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd  782 (1165)
T 2qf7_A          725 IIAV----KDMAGLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAVEAGVDAVD  782 (1165)
T ss_dssp             EEEE----EETTCCCCHHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHHHHHHHHHTTCSEEE
T ss_pred             EEEE----eCccCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHhCCCEEE
Confidence            8866    45556665666777899998876 666665    889998999899999999773

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=94.96  E-value=0.79  Score=34.10  Aligned_cols=110  Identities=14%  Similarity=0.133  Sum_probs=69.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc-CCceEEEe----------cCCCCHHhHHhhHhcCCCCCeEE
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK-GMRPGVAL----------KPGTSVEEVYPLVEGANPVEMVL   72 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g~~~gl~l----------~~~t~~~~~~~~~~~~~~~d~vl   72 (157)
                      ...+.++.+.+.|++++++.     .+  +.++.+|+. ++.+ +.+          ..+.+.+.++.+++  .++|.|.
T Consensus        37 ~~~~~a~~~~~~G~~~i~~~-----~~--~~i~~i~~~~~~p~-i~~~~~~~~~~~~~i~~~~~~i~~~~~--~Gad~V~  106 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRAN-----SV--RDIKEIQAITDLPI-IGIIKKDYPPQEPFITATMTEVDQLAA--LNIAVIA  106 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEEE-----SH--HHHHHHHTTCCSCE-EEECBCCCTTSCCCBSCSHHHHHHHHT--TTCSEEE
T ss_pred             hHHHHHHHHHHCCCcEeecC-----CH--HHHHHHHHhCCCCE-EeeEcCCCCccccccCChHHHHHHHHH--cCCCEEE
Confidence            45678888999999998873     23  668888876 3333 221          11235667777765  5899997


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEE
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~v  127 (157)
                      +....-   ..+......+-++++++..++..+.++- -+.+.+..+.++|+|.+
T Consensus       107 l~~~~~---~~~~~~~~~~~i~~i~~~~~~~~v~~~~-~t~~ea~~a~~~Gad~i  157 (234)
T 1yxy_A          107 MDCTKR---DRHDGLDIASFIRQVKEKYPNQLLMADI-STFDEGLVAHQAGIDFV  157 (234)
T ss_dssp             EECCSS---CCTTCCCHHHHHHHHHHHCTTCEEEEEC-SSHHHHHHHHHTTCSEE
T ss_pred             Eccccc---CCCCCccHHHHHHHHHHhCCCCeEEEeC-CCHHHHHHHHHcCCCEE
Confidence            753321   1110012345577777776666665532 24677888899999998

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=94.94  E-value=0.084  Score=38.86  Aligned_cols=79  Identities=22%  Similarity=0.314  Sum_probs=50.4

Q ss_pred             CceEEEecCCCCHH---hHHhhHhcCCCCCeEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC--Hhh-
Q 031554           43 MRPGVALKPGTSVE---EVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG--PST-  115 (157)
Q Consensus        43 ~~~gl~l~~~t~~~---~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~-  115 (157)
                      ++..++++..+.-+   .++.+-   +.+|++-+     |.   ++ ....++-|+++|+..++++|.+|--+.  .+. 
T Consensus         1 m~li~a~D~~~~~~~~~~~~~~~---~~~diie~-----G~---p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~   69 (211)
T 3f4w_A            1 MKLQLALDELTLPEAMVFMDKVV---DDVDIIEV-----GT---PFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFE   69 (211)
T ss_dssp             CEEEEEECSCCHHHHHHHHHHHG---GGCSEEEE-----CH---HHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHH
T ss_pred             CcEEEEeCCCCHHHHHHHHHHhh---cCccEEEe-----Cc---HHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHH
Confidence            35566775433332   233332   46777654     21   22 334456788888877788888776665  455 


Q ss_pred             HHHHHHcCCCEEEEccc
Q 031554          116 IAEAASAGANCIVAGSS  132 (157)
Q Consensus       116 i~~~~~~Gad~vV~GSa  132 (157)
                      ++.+.++|||.+++...
T Consensus        70 ~~~~~~~Gad~v~v~~~   86 (211)
T 3f4w_A           70 SQLLFDAGADYVTVLGV   86 (211)
T ss_dssp             HHHHHHTTCSEEEEETT
T ss_pred             HHHHHhcCCCEEEEeCC
Confidence            88999999999999754

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}

Probab=94.91  E-value=0.26  Score=39.29  Aligned_cols=116  Identities=16%  Similarity=0.116  Sum_probs=80.6

Q ss_pred             HHHHHHHhC----CCCEEEEcccCCc----------------chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc
Q 031554            7 DYVEPLGKA----GASGFTFHVEISK----------------DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG   64 (157)
Q Consensus         7 ~~i~~~~~~----gad~v~vh~e~~~----------------~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~   64 (157)
                      +.++.+.++    |++.|++..-+.+                .. .+.++++|++|..+.+.+  ...++.+.+.++.+.
T Consensus        81 ~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~-~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~  159 (325)
T 3eeg_A           81 ADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMA-VAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEA  159 (325)
T ss_dssp             HHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTT-HHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHH-HHHHHHHHHCCCEEEEEccccccchHHHHHHHHHH
Confidence            355666666    9999988643322                22 578999999999876654  233555544333321


Q ss_pred             --CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC---CcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           65 --ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS---LDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        65 --~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~---~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                        -.++|.|.+    +.+.|........+.++.+++..++   .+|.+    |-|.-..|.-..+++||+.|
T Consensus       160 ~~~~G~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~v  227 (325)
T 3eeg_A          160 VIEAGADVVNI----PDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQV  227 (325)
T ss_dssp             HHHHTCSEEEC----CBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEE
T ss_pred             HHhcCCCEEEe----cCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCCCEE
Confidence              137887765    5666766666777889999988775   77776    78888888888899999986

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=94.91  E-value=0.67  Score=37.28  Aligned_cols=116  Identities=17%  Similarity=0.194  Sum_probs=76.2

Q ss_pred             cChHHHHHH---HHhCCCCEEEEcccC--------CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhc--CC
Q 031554            3 TNPLDYVEP---LGKAGASGFTFHVEI--------SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEG--AN   66 (157)
Q Consensus         3 ~~p~~~i~~---~~~~gad~v~vh~e~--------~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~--~~   66 (157)
                      .+|+.+.+.   +.+.|.+.+-+|.-.        .... .+.++++|+. |  +.+.+..|-....+...++++.  -.
T Consensus       148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~  226 (382)
T 1rvk_A          148 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMD-LKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKL  226 (382)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHH-HHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEcCCcCccccccchHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence            357666554   457799999999653        1233 5778888884 4  5566666766666554444431  12


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcC-CCEEEEc
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~G-ad~vV~G  130 (157)
                      .++++          .|++.+..++-.+++++.. +++|+.|+.+.  .+.+.++++.| +|++.+-
T Consensus       227 ~i~~i----------E~P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik  282 (382)
T 1rvk_A          227 GFDWI----------EEPMDEQSLSSYKWLSDNL-DIPVVGPESAAGKHWHRAEWIKAGACDILRTG  282 (382)
T ss_dssp             TCSEE----------ECCSCTTCHHHHHHHHHHC-SSCEEECSSCSSHHHHHHHHHHTTCCSEEEEC
T ss_pred             CCCEE----------eCCCChhhHHHHHHHHhhC-CCCEEEeCCccCcHHHHHHHHHcCCCCEEeeC
Confidence            45554          2445555666777777764 79999999985  58888887776 7888653

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=94.90  E-value=0.12  Score=38.22  Aligned_cols=92  Identities=15%  Similarity=0.054  Sum_probs=58.2

Q ss_pred             cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH--hhHHHHHHcCCCEE
Q 031554           50 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGANCI  127 (157)
Q Consensus        50 ~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~--~~i~~~~~~Gad~v  127 (157)
                      ++.+..+.++.+.+  .++|++.+-- ..|.-. .+....++.++++++.. +.++.+++.++.  +.++.+.++|+|++
T Consensus        14 D~~~~~~~~~~~~~--~G~~~i~~~~-~dg~~~-~~~~~g~~~i~~i~~~~-~~~~~v~l~v~d~~~~i~~~~~~gad~v   88 (220)
T 2fli_A           14 DYANFASELARIEE--TDAEYVHIDI-MDGQFV-PNISFGADVVASMRKHS-KLVFDCHLMVVDPERYVEAFAQAGADIM   88 (220)
T ss_dssp             CGGGHHHHHHHHHH--TTCCEEEEEE-EBSSSS-SCBCBCHHHHHHHHTTC-CSEEEEEEESSSGGGGHHHHHHHTCSEE
T ss_pred             CHHHHHHHHHHHHH--cCCCEEEEEe-ecCCCC-CccccCHHHHHHHHHhC-CCCEEEEEeecCHHHHHHHHHHcCCCEE
Confidence            33333445555543  4688865542 234211 12233456777777765 678999999984  46899999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHH
Q 031554          128 VAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus       128 V~GSai~~~~d~~~~~~~l~~  148 (157)
                      .++..-.  +++.+.++.+++
T Consensus        89 ~vh~~~~--~~~~~~~~~~~~  107 (220)
T 2fli_A           89 TIHTEST--RHIHGALQKIKA  107 (220)
T ss_dssp             EEEGGGC--SCHHHHHHHHHH
T ss_pred             EEccCcc--ccHHHHHHHHHH
Confidence            9986533  566666666654

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}

Probab=94.88  E-value=0.43  Score=38.68  Aligned_cols=115  Identities=9%  Similarity=0.128  Sum_probs=76.6

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCC--cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcC--CCCCeEEE
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEIS--KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGA--NPVEMVLV   73 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl~   73 (157)
                      +|+.+.+.   +.+.|.+.+=+|.-..  ... .+.++++|+.   ++.+.+..|-....+...++++.+  ..++++  
T Consensus       149 ~~~~~~~~a~~~~~~Gf~~vKik~g~~~~~~~-~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--  225 (391)
T 2qgy_A          149 DTNDYLRQIEKFYGKKYGGIKIYPMLDSLSIS-IQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWI--  225 (391)
T ss_dssp             CHHHHHHHHHHHHHTTCSCEEECCCCSSHHHH-HHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEE--
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEccCCChHHHH-HHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeE--
Confidence            57666554   4578999999995322  334 6788888884   456677777666666544444310  245554  


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                              .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+-
T Consensus       226 --------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  275 (391)
T 2qgy_A          226 --------EEPVDGENISLLTEIKNTF-NMKVVTGEKQSGLVHFRELISRNAADIFNPD  275 (391)
T ss_dssp             --------ECSSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred             --------eCCCChhhHHHHHHHHhhC-CCCEEEcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence                    2444455566777777764 79999999996 68899888776 7887554

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}

Probab=94.84  E-value=0.46  Score=37.30  Aligned_cols=112  Identities=13%  Similarity=0.101  Sum_probs=76.5

Q ss_pred             HHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEec--CCCCHHhHHhhHhc--CCCCCeEE
Q 031554           12 LGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALK--PGTSVEEVYPLVEG--ANPVEMVL   72 (157)
Q Consensus        12 ~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~--~~t~~~~~~~~~~~--~~~~d~vl   72 (157)
                      +..+|++.|++..-+.+-               .+.+.++++|++|..+.+.+.  +.++.+.+.++.+.  -.++|.|.
T Consensus        89 ~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~  168 (293)
T 3ewb_X           89 LKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVIN  168 (293)
T ss_dssp             HTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEE
T ss_pred             HhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            334799998887544331               125678888999998876553  23555544333321  14788876


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCC---CcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPS---LDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~---~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      +    +.+.|........+.++.+++..++   ++|.+    |-|.-..|.-..+++||+.|
T Consensus       169 l----~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~v  226 (293)
T 3ewb_X          169 I----PDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRV  226 (293)
T ss_dssp             E----ECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEE
T ss_pred             e----cCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhCCCEE
Confidence            6    5666766666777789999988764   55665    67888888888899999966

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=94.84  E-value=0.14  Score=38.48  Aligned_cols=88  Identities=19%  Similarity=0.245  Sum_probs=62.2

Q ss_pred             HHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554           33 ELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI  111 (157)
                      ++++.+++.++-+.+.. ++++.++.++.+++  .+++.|.+-.-         .+...+.++++++.+++..+.++-=+
T Consensus         8 ~~~~~l~~~~~i~v~r~~~~~~~~~~~~al~~--gGv~~iel~~k---------~~~~~~~i~~l~~~~~~~~vgagtvi   76 (214)
T 1wbh_A            8 SAESILTTGPVVPVIVVKKLEHAVPMAKALVA--GGVRVLNVTLR---------TECAVDAIRAIAKEVPEAIVGAGTVL   76 (214)
T ss_dssp             CHHHHHHSCSEEEEECCSSGGGHHHHHHHHHH--TTCCEEEEESC---------STTHHHHHHHHHHHCTTSEEEEESCC
T ss_pred             HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHH--cCCCEEEEeCC---------ChhHHHHHHHHHHHCcCCEEeeCEEE
Confidence            45677777776655543 44444556677775  57999887421         23456788888888777777776645


Q ss_pred             CHhhHHHHHHcCCCEEEEcc
Q 031554          112 GPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +.+++....++|||.+++|.
T Consensus        77 ~~d~~~~A~~aGAd~v~~p~   96 (214)
T 1wbh_A           77 NPQQLAEVTEAGAQFAISPG   96 (214)
T ss_dssp             SHHHHHHHHHHTCSCEEESS
T ss_pred             EHHHHHHHHHcCCCEEEcCC
Confidence            57999999999999999884

>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*

Probab=94.83  E-value=0.82  Score=40.41  Aligned_cols=109  Identities=17%  Similarity=0.089  Sum_probs=70.7

Q ss_pred             HHHH-HHHHcCCceEEEecCCCCHHh-HHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEc
Q 031554           33 ELVQ-RIKSKGMRPGVALKPGTSVEE-VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDG  109 (157)
Q Consensus        33 ~~i~-~ir~~g~~~gl~l~~~t~~~~-~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdG  109 (157)
                      .++. .++.+|+++ +.+....|.+. ++...+  .++|.|.+-+...+     ..+.+.+-++.|++... +++|.|.|
T Consensus       614 ~iVa~~l~~~GfeV-i~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~-----~~~~~~~vi~~L~~~G~~~i~VivGG  685 (727)
T 1req_A          614 KVIATAYADLGFDV-DVGPLFQTPEETARQAVE--ADVHVVGVSSLAGG-----HLTLVPALRKELDKLGRPDILITVGG  685 (727)
T ss_dssp             HHHHHHHHHHTCEE-EECCTTBCHHHHHHHHHH--TTCSEEEEEECSSC-----HHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred             HHHHHHHHhCCeEE-EeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHh-----HHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence            3444 466679988 45666666655 455444  68998877544422     12334455677777654 67776666


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      .+-.+....+.+.|+|.+..     ...+..+.+..+.+.++...
T Consensus       686 ~~p~~d~~~l~~~GaD~~f~-----~gt~~~e~a~~l~~~l~~~~  725 (727)
T 1req_A          686 VIPEQDFDELRKDGAVEIYT-----PGTVIPESAISLVKKLRASL  725 (727)
T ss_dssp             SCCGGGHHHHHHTTEEEEEC-----TTCCHHHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHhCCCCEEEc-----CCccHHHHHHHHHHHHHHhc
Confidence            56667788889999998743     23467778888887776543

>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*

Probab=94.83  E-value=1.1  Score=36.35  Aligned_cols=113  Identities=8%  Similarity=0.039  Sum_probs=74.5

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEE
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLV   73 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~   73 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-.  .... .+.++.+|+. |  +.+.+..|-....+...++++.+.  .++++  
T Consensus       175 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~d-~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~i--  251 (398)
T 2pp0_A          175 PLDQVLKNVVISRENGIGGIKLKVGQPNCAED-IRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWI--  251 (398)
T ss_dssp             CHHHHHHHHHHHHHTTCSCEEEECCCSCHHHH-HHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCE--
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEecCCCCHHHH-HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCcee--
Confidence            56666554   457899999998653  2223 6778888885 4  556666676666665544443101  34444  


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV  128 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV  128 (157)
                              .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.
T Consensus       252 --------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~  299 (398)
T 2pp0_A          252 --------EEPLDAYDIEGHAQLAAAL-DTPIATGEMLTSFREHEQLILGNASDFVQ  299 (398)
T ss_dssp             --------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred             --------eCCCChhhHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEE
Confidence                    2445555566777777764 79999999997 68888887776 77773

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1

Probab=94.80  E-value=1.2  Score=35.49  Aligned_cols=142  Identities=19%  Similarity=0.285  Sum_probs=81.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc------------hHHHHHHHHHHcCCceEE--EecCCCCHHhHHhhHhc---CC-C
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD------------NWQELVQRIKSKGMRPGV--ALKPGTSVEEVYPLVEG---AN-P   67 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~------------~~~~~i~~ir~~g~~~gl--~l~~~t~~~~~~~~~~~---~~-~   67 (157)
                      .+.++.+.++|.|.+.+..++.++            .+.+.++.+++.|+.+.+  .+......+.+.+.++.   +. .
T Consensus       159 ~e~l~~L~~aGvd~v~i~les~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~  238 (369)
T 1r30_A          159 ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTP  238 (369)
T ss_dssp             HHHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHHHHHCCCCEEeecCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCC
Confidence            347788999999999998877321            225567778888887654  33334444443333321   12 2


Q ss_pred             CCeEEEEee--eCCCCCc--c-cc-hhHHHHHHHHHhhCCCCcEEEEcC---CCHhhHHHHHHcCCCEEEEcccccCC--
Q 031554           68 VEMVLVMTV--EPGFGGQ--K-FM-PEMMDKVRSLRNRYPSLDIEVDGG---LGPSTIAEAASAGANCIVAGSSVFGA--  136 (157)
Q Consensus        68 ~d~vl~m~v--~pG~~gq--~-~~-~~~~~ki~~l~~~~~~~~I~vdGG---I~~~~i~~~~~~Gad~vV~GSai~~~--  136 (157)
                      ++.+-+...  .||+.-.  . .. .+.++.+..+|...++..+-+-+|   ++.+.-.....+||+.++.|..+...  
T Consensus       239 ~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~~l~~~~i~i~~~~~~l~~~~~~~~l~~Gan~~~~g~~~~t~~~  318 (369)
T 1r30_A          239 PESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPN  318 (369)
T ss_dssp             CSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBC
T ss_pred             CCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHHhCCCCceEeecchhhcChHHHHHHhhCCCceEEeCCeeeCCCC
Confidence            667665543  4554321  1 11 233444555666677755555554   33344455678999999888766544  


Q ss_pred             CCHHHHHHHHH
Q 031554          137 PEPAHVISLMR  147 (157)
Q Consensus       137 ~d~~~~~~~l~  147 (157)
                      .++.+-++.++
T Consensus       319 ~~~~~~~~~i~  329 (369)
T 1r30_A          319 PEEDKDLQLFR  329 (369)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            33444444443

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=94.78  E-value=0.64  Score=36.89  Aligned_cols=114  Identities=12%  Similarity=0.125  Sum_probs=73.2

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCce--EEEecCCCCHHhHHhhHhc--CCCCC--eEEE
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRP--GVALKPGTSVEEVYPLVEG--ANPVE--MVLV   73 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~--gl~l~~~t~~~~~~~~~~~--~~~~d--~vl~   73 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-.. ... .+.++++|+.|-.+  .+..|-....+...++++.  -..++  ++  
T Consensus       139 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~d-~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~i--  215 (345)
T 2zad_A          139 TVENRVKEAKKIFEEGFRVIKIKVGENLKED-IEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVY--  215 (345)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCSCHHHH-HHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEE--
T ss_pred             CHHHHHHHHHHHHHcCcCEEEEeecCCHHHH-HHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeee--
Confidence            56666544   4678999999986432 223 56788888876444  4455555555554444321  02344  33  


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                              .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus       216 --------E~P~~~~~~~~~~~l~~~~-~ipia~dE~~~~~~~~~~~i~~~~~d~v~i  264 (345)
T 2zad_A          216 --------EQPVRREDIEGLKFVRFHS-PFPVAADESARTKFDVMRLVKEEAVDYVNI  264 (345)
T ss_dssp             --------ECCSCTTCHHHHHHHHHHS-SSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             --------eCCCCcccHHHHHHHHHhC-CCCEEEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence                    3555555666777777764 78999999996 68888887766 788755

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=94.78  E-value=0.29  Score=37.98  Aligned_cols=113  Identities=15%  Similarity=0.158  Sum_probs=67.9

Q ss_pred             HHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHc--CCceEEEecCC--CCHHhHHhhHhc--CCCCCeEEEEe
Q 031554            8 YVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSK--GMRPGVALKPG--TSVEEVYPLVEG--ANPVEMVLVMT   75 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~--g~~~gl~l~~~--t~~~~~~~~~~~--~~~~d~vl~m~   75 (157)
                      -.+.+.+.|||-|-++....      .+.+.+-++.+++.  |...-+.+.+.  |+ +.+....++  -.++|+|=   
T Consensus       116 Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~-eei~~A~~ia~eaGADfVK---  191 (260)
T 3r12_A          116 EAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDT-EEKIAACVISKLAGAHFVK---  191 (260)
T ss_dssp             HHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCH-HHHHHHHHHHHHTTCSEEE---
T ss_pred             HHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCH-HHHHHHHHHHHHhCcCEEE---
Confidence            35678889999999995431      12225566666654  33333333211  22 222222221  15899994   


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      ..-||+...   .+++-++-+++. .+++.|-+.|||+ .+++..++++||+-+
T Consensus       192 TSTGf~~~G---AT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aGA~Ri  242 (260)
T 3r12_A          192 TSTGFGTGG---ATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRI  242 (260)
T ss_dssp             CCCSSSSCC---CCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             cCCCCCCCC---CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence            335665322   234444555543 4578999999999 699999999999965

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=94.77  E-value=0.16  Score=39.75  Aligned_cols=74  Identities=24%  Similarity=0.235  Sum_probs=51.8

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +|.+.++.|.+  .+++.|-+.+-..-|+|      .++.++++|+.. +++|.. |+-+++..+.+...+|||++.++.
T Consensus        80 dp~~~A~~y~~--~GA~~IsVltd~~~f~G------s~~~L~~ir~~v-~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~  150 (272)
T 3tsm_A           80 DPPALAKAYEE--GGAACLSVLTDTPSFQG------APEFLTAARQAC-SLPALRKDFLFDPYQVYEARSWGADCILIIM  150 (272)
T ss_dssp             CHHHHHHHHHH--TTCSEEEEECCSTTTCC------CHHHHHHHHHTS-SSCEEEESCCCSTHHHHHHHHTTCSEEEEET
T ss_pred             CHHHHHHHHHH--CCCCEEEEeccccccCC------CHHHHHHHHHhc-CCCEEECCccCCHHHHHHHHHcCCCEEEEcc
Confidence            45566777765  57999988764443444      344566666653 555544 556678899999999999999998


Q ss_pred             cccC
Q 031554          132 SVFG  135 (157)
Q Consensus       132 ai~~  135 (157)
                      +...
T Consensus       151 a~L~  154 (272)
T 3tsm_A          151 ASVD  154 (272)
T ss_dssp             TTSC
T ss_pred             cccC
Confidence            8763

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}

Probab=94.75  E-value=0.89  Score=36.85  Aligned_cols=114  Identities=13%  Similarity=0.099  Sum_probs=72.3

Q ss_pred             ChHHHHHH---HHhCCCCEEEEccc-----CC---------------cchHHHHHHHHHHc-C--CceEEEecCCCCHHh
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVE-----IS---------------KDNWQELVQRIKSK-G--MRPGVALKPGTSVEE   57 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e-----~~---------------~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~   57 (157)
                      +|+.+.+.   +.+.|.+.+=+|.-     ..               ... .+.++.+|+. |  +.+.+..|-....+.
T Consensus       146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~-~e~v~avr~avG~d~~l~vDan~~~~~~~  224 (403)
T 2ox4_A          146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIG-VERVEAIRNAVGPDVDIIVENHGHTDLVS  224 (403)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHH-HHHHHHHHHHHCTTSEEEEECTTCSCHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHH
Confidence            67777655   45789999999852     11               123 5778888883 4  555666666666665


Q ss_pred             HHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEE
Q 031554           58 VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCI  127 (157)
Q Consensus        58 ~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~v  127 (157)
                      ..++++.+...+...+   +     |++.+..++-.+++++.. +++|+.|+.+. .+.++++++.| +|++
T Consensus       225 ai~~~~~l~~~~i~~i---E-----~P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v  287 (403)
T 2ox4_A          225 AIQFAKAIEEFNIFFY---E-----EINTPLNPRLLKEAKKKI-DIPLASGERIYSRWGFLPFLEDRSIDVI  287 (403)
T ss_dssp             HHHHHHHHGGGCEEEE---E-----CCSCTTSTHHHHHHHHTC-CSCEEECTTCCHHHHHHHHHHTTCCSEE
T ss_pred             HHHHHHHHHhhCCCEE---e-----CCCChhhHHHHHHHHHhC-CCCEEecCCcCCHHHHHHHHHcCCCCEE
Confidence            5444431133332222   2     334445566667777664 79999999997 68888888776 7777

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1

Probab=94.74  E-value=0.49  Score=37.89  Aligned_cols=115  Identities=16%  Similarity=0.171  Sum_probs=75.7

Q ss_pred             ChHHHHHH---HHh-CCCCEEEEcccCC--cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcC--CCCCeEE
Q 031554            4 NPLDYVEP---LGK-AGASGFTFHVEIS--KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGA--NPVEMVL   72 (157)
Q Consensus         4 ~p~~~i~~---~~~-~gad~v~vh~e~~--~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl   72 (157)
                      +|+.+++.   +.+ .|.+.+-+|.-..  +.. .+.++++|+. |  +.+.+..|-..+.+...++++.+  ..++++ 
T Consensus       142 ~~e~~~~~a~~~~~~~Gf~~iKik~g~~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-  219 (370)
T 1nu5_A          142 DTARDIDSALEMIETRRHNRFKVKLGARTPAQD-LEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELV-  219 (370)
T ss_dssp             CHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHH-HHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEE-
T ss_pred             CHHHHHHHHHHHHHhCCccEEEEecCCCChHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceE-
Confidence            56666544   455 8999999986531  223 5778888874 4  55666667666665544443210  135554 


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                               .|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+-
T Consensus       220 ---------EqP~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik  269 (370)
T 1nu5_A          220 ---------EQPVPRANFGALRRLTEQN-GVAILADESLSSLSSAFELARDHAVDAFSLK  269 (370)
T ss_dssp             ---------ECCSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             ---------eCCCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHhCCCCEEEEc
Confidence                     2445555667777777764 79999999996 68888887776 7888664

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=94.72  E-value=0.88  Score=33.49  Aligned_cols=116  Identities=18%  Similarity=0.172  Sum_probs=71.6

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEec-C---------CCCHHhHHhhHhcCCCCCeEEEE
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALK-P---------GTSVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~-~---------~t~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      +.+..+.+.++|++++++-     .  .+.++.+|+.--.+-+.+. .         ..+.+.++.+++  .++|.|.+.
T Consensus        25 ~~~~a~~~~~~Ga~~i~~~-----~--~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~--~Gad~v~l~   95 (223)
T 1y0e_A           25 MSKMALAAYEGGAVGIRAN-----T--KEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIE--SQCEVIALD   95 (223)
T ss_dssp             HHHHHHHHHHHTCSEEEEE-----S--HHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHH--HTCSEEEEE
T ss_pred             HHHHHHHHHHCCCeeeccC-----C--HHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHh--CCCCEEEEe
Confidence            3456777889999998762     2  3678888875322323211 1         124456666654  488999876


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      +..-   ..+ .....+-++++++.+++..+.++ .-+.+.+..+.++|+|.+.++..-|
T Consensus        96 ~~~~---~~p-~~~~~~~i~~~~~~~~~~~v~~~-~~t~~e~~~~~~~G~d~i~~~~~g~  150 (223)
T 1y0e_A           96 ATLQ---QRP-KETLDELVSYIRTHAPNVEIMAD-IATVEEAKNAARLGFDYIGTTLHGY  150 (223)
T ss_dssp             CSCS---CCS-SSCHHHHHHHHHHHCTTSEEEEE-CSSHHHHHHHHHTTCSEEECTTTTS
T ss_pred             eecc---cCc-ccCHHHHHHHHHHhCCCceEEec-CCCHHHHHHHHHcCCCEEEeCCCcC
Confidence            4320   000 01234456777777677777664 3467888889999999987765433

>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}

Probab=94.72  E-value=0.44  Score=36.55  Aligned_cols=109  Identities=13%  Similarity=0.115  Sum_probs=63.3

Q ss_pred             ccCCcchHHHHH-HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC
Q 031554           24 VEISKDNWQELV-QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS  102 (157)
Q Consensus        24 ~e~~~~~~~~~i-~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~  102 (157)
                      .|..+-. ..++ ..++.+|.++- .+.++.|.+.+...... ..+|.|.+-+..+..     .+...+-++++++..++
T Consensus       133 gd~HdiG-~~iva~~L~~~G~~Vi-~LG~~vp~e~l~~~~~~-~~~d~V~lS~l~~~~-----~~~~~~~i~~l~~~~~~  204 (258)
T 2i2x_B          133 GDVHDIG-KNIVTALLRANGYNVV-DLGRDVPAEEVLAAVQK-EKPIMLTGTALMTTT-----MYAFKEVNDMLLENGIK  204 (258)
T ss_dssp             TCCCCHH-HHHHHHHHHHTTCEEE-EEEEECCSHHHHHHHHH-HCCSEEEEECCCTTT-----TTHHHHHHHHHHTTTCC
T ss_pred             CCccHHH-HHHHHHHHHHCCCEEE-ECCCCCCHHHHHHHHHH-cCCCEEEEEeeccCC-----HHHHHHHHHHHHhcCCC
Confidence            4443333 3333 44677888763 23334566554333322 478999875544321     23455567888888778


Q ss_pred             CcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          103 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       103 ~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      ++|.+.|..-.+...  .+.|||.+        .+|..++.+.+++.+
T Consensus       205 ~~v~vGG~~~~~~~~--~~igad~~--------~~da~~av~~~~~l~  242 (258)
T 2i2x_B          205 IPFACGGGAVNQDFV--SQFALGVY--------GEEAADAPKIADAII  242 (258)
T ss_dssp             CCEEEESTTCCHHHH--HTSTTEEE--------CSSTTHHHHHHHHHH
T ss_pred             CcEEEECccCCHHHH--HHcCCeEE--------ECCHHHHHHHHHHHH
Confidence            999998877654443  36788876        345555555555444

>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A

Probab=94.70  E-value=0.42  Score=38.66  Aligned_cols=114  Identities=11%  Similarity=0.093  Sum_probs=73.4

Q ss_pred             HHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCC-CeEEEEee
Q 031554            6 LDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPV-EMVLVMTV   76 (157)
Q Consensus         6 ~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~-d~vl~m~v   76 (157)
                      +.+++.   +.+.|.+.+-+|.-.  .... .+.++++|+. |  +.+.+..|-....+...++++.+... +...+   
T Consensus       141 e~~~~~a~~~~~~Gf~~vKik~g~~~~~~d-~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~~i---  216 (382)
T 2gdq_A          141 SRSVSNVEAQLKKGFEQIKVKIGGTSFKED-VRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWL---  216 (382)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEECSSSCHHHH-HHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEE---
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCCCHHHH-HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCeEE---
Confidence            666544   457899999999642  2233 5778888874 4  55666667666776655555421333 32221   


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                      +     |++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus       217 E-----qP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  265 (382)
T 2gdq_A          217 E-----EPLPFDQPQDYAMLRSRL-SVPVAGGENMKGPAQYVPLLSQRCLDIIQP  265 (382)
T ss_dssp             E-----CCSCSSCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             E-----CCCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence            2     344445566677777663 78999999997 68888888776 777743

>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}

Probab=94.67  E-value=0.38  Score=35.98  Aligned_cols=97  Identities=19%  Similarity=0.143  Sum_probs=62.2

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEE--EeeeCCCCCcccchhHHHHHHHHHhhCC--CCcEEEEc
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYP--SLDIEVDG  109 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~--m~v~pG~~gq~~~~~~~~ki~~l~~~~~--~~~I~vdG  109 (157)
                      +-..++.+|.++ +.+.++.|.+.+.....- ..+|.|.+  -+...    . -.+...+-++++++..+  +++|.+.|
T Consensus       112 v~~~l~~~G~~V-i~LG~~vp~e~iv~~~~~-~~~d~v~l~~S~l~~----~-~~~~~~~~i~~l~~~~~~~~v~v~vGG  184 (215)
T 3ezx_A          112 VTTMLGANGFQI-VDLGVDVLNENVVEEAAK-HKGEKVLLVGSALMT----T-SMLGQKDLMDRLNEEKLRDSVKCMFGG  184 (215)
T ss_dssp             HHHHHHHTSCEE-EECCSSCCHHHHHHHHHH-TTTSCEEEEEECSSH----H-HHTHHHHHHHHHHHTTCGGGSEEEEES
T ss_pred             HHHHHHHCCCeE-EEcCCCCCHHHHHHHHHH-cCCCEEEEEchhccc----C-cHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence            334467778764 357778899876444433 68899877  33221    1 12345556777777765  78999999


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554          110 GLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      ..- ++.+.   +.|||.+        ++|..++.+..++
T Consensus       185 ~~~~~~~a~---~iGad~~--------~~dA~~av~~a~~  213 (215)
T 3ezx_A          185 APVSDKWIE---EIGADAT--------AENAAEAAKVALE  213 (215)
T ss_dssp             SSCCHHHHH---HHTCCBC--------CSSHHHHHHHHHH
T ss_pred             CCCCHHHHH---HhCCeEE--------ECCHHHHHHHHHH
Confidence            855 44333   4588866        6788777776654

>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}

Probab=94.65  E-value=0.2  Score=41.10  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=75.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEccc--------------CCcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVE--------------ISKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN   66 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e--------------~~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~   66 (157)
                      .|...++.+.+.|...+=++.-              ..+.. .+.++++|+. |  +...+..|-....+....+++.+.
T Consensus       159 ~~~~~a~~~~~~G~~~~K~~~~~~~~~K~G~~~~~~~~~~d-~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~  237 (410)
T 3dip_A          159 DAGVLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDG-LEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALA  237 (410)
T ss_dssp             CHHHHHHHHHHTTCSEEEECTTHHHHTTCTTCCCHHHHHHH-HHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGG
T ss_pred             hHHHHHHHHHHcCCCEEEECCccCccccccCcCCHHHHHHH-HHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4556677888999999999411              01123 4677888875 4  556666777777766555443102


Q ss_pred             --CCCeEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554           67 --PVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS  131 (157)
Q Consensus        67 --~~d~vl~m~v~pG~~gq~-~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS  131 (157)
                        .+++|          .|+ ..+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+--
T Consensus       238 ~~~i~~i----------EqP~~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~  296 (410)
T 3dip_A          238 DYGVLWV----------EDPIAKMDNIPAVADLRRQT-RAPICGGENLAGTRRFHEMLCADAIDFVMLDL  296 (410)
T ss_dssp             GGTCSEE----------ECCBSCTTCHHHHHHHHHHH-CCCEEECTTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred             hcCCCEE----------ECCCCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCeEeecc
Confidence              34444          244 3444556666776653 68999999998 68888888876 78886643

>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A

Probab=94.58  E-value=0.16  Score=43.02  Aligned_cols=144  Identities=13%  Similarity=0.127  Sum_probs=86.6

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCC--HHhHHhhHhcCCCCCeEEEEeeeCCCC-Cc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTS--VEEVYPLVEGANPVEMVLVMTVEPGFG-GQ   83 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~--~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq   83 (157)
                      ..+....+.|+|+|.++.--..+.+.++.+++.+.|..+.+...-+|+  ++.+.+++   ...|.|++-.-+-|.. |.
T Consensus       197 ~DI~~~l~~g~d~I~lpfV~saeDv~~~~~~l~~~~~~i~IiakIEt~eav~nldeI~---~~~DgImvgrgDLgvelg~  273 (500)
T 1a3w_A          197 EDLRFGVKNGVHMVFASFIRTANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEIL---KVTDGVMVARGDLGIEIPA  273 (500)
T ss_dssp             HHHHHHHHHTCSEEEECSCCSHHHHHHHHHHHHHHHTTSEEEEEECSSHHHHSHHHHH---HHSSEEEECHHHHHHHTTG
T ss_pred             HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCcEEEEEECChHHHHhHHHHH---HhCCEEEECchHhhhhcCc
Confidence            346777889999999996433333366667776665555554333554  45678887   4578887642111100 11


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEE--------cCCCHh-----hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVD--------GGLGPS-----TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vd--------GGI~~~-----~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      ...+...+++-+..+. .+.++.+.        -.-++.     .+...+..|+|.+.+++---.-.-|.++++.+.++.
T Consensus       274 ~~v~~aqk~ii~aara-aGkpvi~ATQMLeSMi~~~~ptraEvsdva~av~~G~d~vmLs~eta~G~yPveaV~~m~~I~  352 (500)
T 1a3w_A          274 PEVLAVQKKLIAKSNL-AGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAVTTMAETA  352 (500)
T ss_dssp             GGHHHHHHHHHHHHHH-HTCCEEECSSTTGGGGSCSSCCHHHHHHHHHHHHHTCSEECBSTTTTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-cCCCEEEEeehhhhhccCCCchHHHHHHHHHHHHhCCCEEEecchhhcchhHHHHHHHHHHHH
Confidence            1233444443333332 14555431        223333     567777889999999987555578999999999887


Q ss_pred             HHHh
Q 031554          151 EDAQ  154 (157)
Q Consensus       151 ~~~~  154 (157)
                      +.+-
T Consensus       353 ~~aE  356 (500)
T 1a3w_A          353 VIAE  356 (500)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            7643

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*

Probab=94.56  E-value=0.28  Score=39.75  Aligned_cols=115  Identities=9%  Similarity=-0.011  Sum_probs=77.0

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEE
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLV   73 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~   73 (157)
                      +|+.+.+   .+.+.|.+.+-+|.-.  .... .+.++++|+. |  +.+.+..|-....+...++++.+.  .++++  
T Consensus       165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--  241 (392)
T 1tzz_A          165 GLSMLRGEMRGYLDRGYNVVKMKIGGAPIEED-RMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWY--  241 (392)
T ss_dssp             CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHH-HHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEE--
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHH-HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCee--
Confidence            5666654   4467899999998653  2233 6778888883 4  556666676666665544443112  34443  


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-----CCEEEEc
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-----ANCIVAG  130 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-----ad~vV~G  130 (157)
                              .|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.|     +|++.+-
T Consensus       242 --------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik  295 (392)
T 1tzz_A          242 --------EEVGDPLDYALQAALAEFY-PGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFD  295 (392)
T ss_dssp             --------ECCSCTTCHHHHHHHTTTC-CSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred             --------cCCCChhhHHHHHHHHhhC-CCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEEC
Confidence                    2445556677777777764 69999999996 78899988887     8988554

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=94.55  E-value=0.23  Score=36.81  Aligned_cols=104  Identities=14%  Similarity=0.171  Sum_probs=61.7

Q ss_pred             HHHHHHhCCCCEEEEccc-CCcchHHHHHHHHHHcCCce-EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            8 YVEPLGKAGASGFTFHVE-ISKDNWQELVQRIKSKGMRP-GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e-~~~~~~~~~i~~ir~~g~~~-gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      .++.+.+.|+|++.+-.- .......+.++.+++.+... .+.+|  +.++.+.+     .++|.|.+.    + ..  .
T Consensus        34 ~~~~~~~~G~~~v~lr~~~~~~~~~~~~~~~l~~~~~~~~~l~v~--~~~~~a~~-----~gad~v~l~----~-~~--~   99 (221)
T 1yad_A           34 RIIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGIDKRKLVMN--GRVDIALF-----STIHRVQLP----S-GS--F   99 (221)
T ss_dssp             HHHHHHGGGCSEEEECCTTSCHHHHHHHHHHHHHTTCCGGGEEEE--SCHHHHHT-----TTCCEEEEC----T-TS--C
T ss_pred             HHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHhcCcCCeEEEe--ChHHHHHH-----cCCCEEEeC----C-Cc--c
Confidence            367778899998876421 11222256777787765432 45665  45544433     478998762    1 11  1


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                         ..+.++++   .++..+.+.-. +.+.+....+.|+|.+.+|+.
T Consensus       100 ---~~~~~~~~---~~~~~ig~sv~-t~~~~~~a~~~gaD~i~~~~~  139 (221)
T 1yad_A          100 ---SPKQIRAR---FPHLHIGRSVH-SLEEAVQAEKEDADYVLFGHV  139 (221)
T ss_dssp             ---CHHHHHHH---CTTCEEEEEEC-SHHHHHHHHHTTCSEEEEECC
T ss_pred             ---CHHHHHHH---CCCCEEEEEcC-CHHHHHHHHhCCCCEEEECCc
Confidence               22333333   33555555322 577888888999999999873

>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A

Probab=94.54  E-value=0.25  Score=40.42  Aligned_cols=115  Identities=11%  Similarity=0.104  Sum_probs=76.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccC---------------CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEI---------------SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGA   65 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~---------------~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~   65 (157)
                      +|...++.+.+.|...+=+..-.               .+.. .+.++++|+. |  +...+..|-....+....+++.+
T Consensus       155 ~~~~~a~~~~~~G~~~~Kik~g~~~~~~~~~g~~~~~~~~~d-~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L  233 (400)
T 4dxk_A          155 RADELAHSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSA-LEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKAL  233 (400)
T ss_dssp             CHHHHHHHHHHTTCCEEEECTTHHHHHHHTTSCCCHHHHHHH-HHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHhCCCEEEEcCCCccccccccCcCCHHHHHHH-HHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            46778888899999999987430               1123 4667778875 4  56667777777777655554311


Q ss_pred             C--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           66 N--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        66 ~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                      .  .++++          .|++.+..++-.+++++. .+++|+.|+.+. .+.+.++++.| +|++.+-
T Consensus       234 ~~~~i~~i----------EeP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d  291 (400)
T 4dxk_A          234 TPYQTFWH----------EDPIKMDSLSSLTRYAAV-SPAPISASETLGSRWAFRDLLETGAAGVVMLD  291 (400)
T ss_dssp             GGGCCSEE----------ECCBCTTSGGGHHHHHHH-CSSCEEECTTCCHHHHHHHHHHTTCCCEEEEC
T ss_pred             hhcCCCEE----------EcCCCcccHHHHHHHHHh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence            2  34444          234444444455666666 378999999998 58888888887 6887654

>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}

Probab=94.51  E-value=0.59  Score=30.55  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=64.8

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGG  110 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGG  110 (157)
                      .+-+.+++.|..+..+   .+..+.++.+.+  ..+|.|++-...|+..       .++-++++++..  +...|.+-.+
T Consensus        21 ~l~~~L~~~g~~v~~~---~~~~~a~~~l~~--~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~~~   88 (132)
T 3lte_A           21 AIERVLKRDHWQVEIA---HNGFDAGIKLST--FEPAIMTLDLSMPKLD-------GLDVIRSLRQNKVANQPKILVVSG   88 (132)
T ss_dssp             HHHHHHHHTTCEEEEE---SSHHHHHHHHHH--TCCSEEEEESCBTTBC-------HHHHHHHHHTTTCSSCCEEEEECC
T ss_pred             HHHHHHHHCCcEEEEe---CCHHHHHHHHHh--cCCCEEEEecCCCCCC-------HHHHHHHHHhcCccCCCeEEEEeC
Confidence            3444566667765432   233333333332  4688887755556533       355677777764  4577888888


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      -+.+.+.+..++||+.+     +.+.-++.+....+++....
T Consensus        89 ~~~~~~~~~~~~g~~~~-----l~kP~~~~~l~~~i~~~~~~  125 (132)
T 3lte_A           89 LDKAKLQQAVTEGADDY-----LEKPFDNDALLDRIHDLVNE  125 (132)
T ss_dssp             SCSHHHHHHHHHTCCEE-----ECSSCCHHHHHHHHHHHHC-
T ss_pred             CChHHHHHHHHhChHHH-----hhCCCCHHHHHHHHHHHcCC
Confidence            77778888999999977     44555777777777766543

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=94.51  E-value=0.33  Score=36.68  Aligned_cols=114  Identities=10%  Similarity=0.046  Sum_probs=69.4

Q ss_pred             HHHHHHHHhCCCCEEEE-----cccCCc-chHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554            6 LDYVEPLGKAGASGFTF-----HVEISK-DNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~v-----h~e~~~-~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      .+-++.+.++|+|++++     |.-..- .- ..+++.+|++   .....+-+...+|...++.+.+  .++|+|.+.. 
T Consensus        20 ~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G-~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~--aGad~itvH~-   95 (228)
T 3ovp_A           20 GAECLRMLDSGADYLHLDVMDGHFVPNITFG-HPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAV--AGANQYTFHL-   95 (228)
T ss_dssp             HHHHHHHHHTTCSCEEEEEEBSSSSSCBCBC-HHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHH--HTCSEEEEEG-
T ss_pred             HHHHHHHHHcCCCEEEEEecCCCcCcccccC-HHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHH--cCCCEEEEcc-
Confidence            56677888999999999     642111 12 4789999987   3344554566788777777776  4899998752 


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +.   .    +...+-++++|+.....-+.+--+-..+.+..+.. .+|.+.+.|
T Consensus        96 Ea---~----~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~-~~D~Vl~ms  142 (228)
T 3ovp_A           96 EA---T----ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWAN-QIDMALVMT  142 (228)
T ss_dssp             GG---C----SCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGG-GCSEEEEES
T ss_pred             CC---c----hhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhc-cCCeEEEee
Confidence            21   1    12344566666653222233333334566666554 478776554

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}

Probab=94.50  E-value=0.48  Score=38.48  Aligned_cols=114  Identities=12%  Similarity=0.162  Sum_probs=74.9

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcC--CCCCeEEEE
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGA--NPVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl~m   74 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-.. ... .+.++++|+. |  +.+.+..|-....+...++++.+  ..++++   
T Consensus       145 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i---  220 (397)
T 2qde_A          145 EPEAVAEEALAVLREGFHFVKLKAGGPLKAD-IAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKI---  220 (397)
T ss_dssp             CHHHHHHHHHHHHHHTCSCEEEECCSCHHHH-HHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCE---
T ss_pred             CHHHHHHHHHHHHHhhhhheeecccCCHHHH-HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCEE---
Confidence            56666544   4577999999996432 223 5778888886 4  55666667666666554444310  234544   


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                             .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus       221 -------EqP~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  269 (397)
T 2qde_A          221 -------EQPLPAWDLDGMARLRGKV-ATPIYADESAQELHDLLAIINKGAADGLMI  269 (397)
T ss_dssp             -------ECCSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             -------ECCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEE
Confidence                   2445555667777777764 78999999996 68888877655 888865

>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}

Probab=94.38  E-value=0.78  Score=37.37  Aligned_cols=131  Identities=11%  Similarity=0.151  Sum_probs=80.6

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcc----cC--------------CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHH
Q 031554            4 NPLDYVEP---LGKAGASGFTFHV----EI--------------SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVY   59 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~----e~--------------~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~   59 (157)
                      .|..+++.   +.+.|.+.+-+|.    -.              .... .+.++.+|+. |  +.+.+..|-....+...
T Consensus       149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~-~e~v~avRea~G~d~~l~vDan~~~~~~~a~  227 (410)
T 2qq6_A          149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAM-VARVAAVREAVGPEVEVAIDMHGRFDIPSSI  227 (410)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHH-HHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence            46666544   4678999999987    21              0123 5778888883 4  55566666666666554


Q ss_pred             hhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcccccC
Q 031554           60 PLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVFG  135 (157)
Q Consensus        60 ~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai~~  135 (157)
                      ++++.+.  .++++          .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++        
T Consensus       228 ~~~~~l~~~~i~~i----------EeP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v--------  288 (410)
T 2qq6_A          228 RFARAMEPFGLLWL----------EEPTPPENLDALAEVRRST-STPICAGENVYTRFDFRELFAKRAVDYV--------  288 (410)
T ss_dssp             HHHHHHGGGCCSEE----------ECCSCTTCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHTTCCSEE--------
T ss_pred             HHHHHHhhcCCCeE----------ECCCChhhHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCEE--------
Confidence            4443102  34443          2344455566777777764 79999999996 68888888776 7777        


Q ss_pred             CCCHHH--HHHHHHHHHHHHh
Q 031554          136 APEPAH--VISLMRKSVEDAQ  154 (157)
Q Consensus       136 ~~d~~~--~~~~l~~~~~~~~  154 (157)
                      ..++..  -+.+.+++..-++
T Consensus       289 ~ik~~~~GGite~~~ia~~A~  309 (410)
T 2qq6_A          289 MPDVAKCGGLAEAKRIANLAE  309 (410)
T ss_dssp             CCBHHHHTHHHHHHHHHHHHH
T ss_pred             ecCccccCCHHHHHHHHHHHH
Confidence            334432  3555555554443

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=94.36  E-value=1.2  Score=33.60  Aligned_cols=109  Identities=12%  Similarity=0.076  Sum_probs=67.0

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC---------C-CHHhHHhhHhcCCCCCeEEEE
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG---------T-SVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~---------t-~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      |......+.+.||..+.+.      . .+.++.+|+.--.+-+.++..         | ..+.+..+.+  .++|.|++.
T Consensus        38 ~~~~A~a~~~~Ga~~i~~~------~-~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~--aGad~I~l~  108 (229)
T 3q58_A           38 VAAMAQAAASAGAVAVRIE------G-IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQ--AGADIIAFD  108 (229)
T ss_dssp             HHHHHHHHHHTTCSEEEEE------S-HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHH--HTCSEEEEE
T ss_pred             HHHHHHHHHHCCCcEEEEC------C-HHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHH--cCCCEEEEC
Confidence            4667788899999999983      2 478899998744454433321         1 2344555554  589999876


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      +..-.  ......+   -++++++.  +..+.++= -+.+.+..+.++|||.+.++
T Consensus       109 ~~~~~--~p~~l~~---~i~~~~~~--g~~v~~~v-~t~eea~~a~~~Gad~Ig~~  156 (229)
T 3q58_A          109 ASFRS--RPVDIDS---LLTRIRLH--GLLAMADC-STVNEGISCHQKGIEFIGTT  156 (229)
T ss_dssp             CCSSC--CSSCHHH---HHHHHHHT--TCEEEEEC-SSHHHHHHHHHTTCSEEECT
T ss_pred             ccccC--ChHHHHH---HHHHHHHC--CCEEEEec-CCHHHHHHHHhCCCCEEEec
Confidence            43200  0112223   34444443  55555542 35788889999999999653

>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*

Probab=94.33  E-value=0.38  Score=38.55  Aligned_cols=112  Identities=14%  Similarity=0.167  Sum_probs=73.0

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCCcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEe
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEISKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMT   75 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~   75 (157)
                      +|+.+.+.   +.+.|.+.+-+|.. +... .+.++++|+. |  +...+..|-....+. .++++.+.  .++++    
T Consensus       141 ~~~~~~~~a~~~~~~Gf~~vKik~~-~~~~-~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~i----  213 (368)
T 1sjd_A          141 TIPQLLDVVGGYLDEGYVRIKLKIE-PGWD-VEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFGLLLI----  213 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECB-TTBS-HHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGCCSEE----
T ss_pred             CHHHHHHHHHHHHHhCccEEEEecC-chhH-HHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcCCCeE----
Confidence            56666544   45779999999974 2344 6788888874 4  445555565555544 44443101  34443    


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                            .|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+
T Consensus       214 ------E~P~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  262 (368)
T 1sjd_A          214 ------EQPLEEEDVLGHAELARRI-QTPICLDESIVSARAAADAIKLGAVQIVNI  262 (368)
T ss_dssp             ------ECCSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred             ------eCCCChhhHHHHHHHHHhC-CCCEEECCCcCCHHHHHHHHHcCCCCEEEe
Confidence                  2445555666777777663 68999999997 68888888776 788766

>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A

Probab=94.30  E-value=1.5  Score=38.98  Aligned_cols=105  Identities=12%  Similarity=0.084  Sum_probs=65.8

Q ss_pred             HHHHHcCCceEEEecCCCCHHh-HHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCCH
Q 031554           36 QRIKSKGMRPGVALKPGTSVEE-VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGP  113 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~~t~~~~-~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~~  113 (157)
                      ..++.+|+++ +.+....|.+. ++...+  .++|.|.+-+...+     ..+.+.+-++.|++... +++|.|.|.+-.
T Consensus       626 ~~l~~~GfeV-i~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~-----~~~~~~~vi~~Lr~~G~~dv~VivGG~~P~  697 (762)
T 2xij_A          626 TGFADLGFDV-DIGPLFQTPREVAQQAVD--ADVHAVGVSTLAAG-----HKTLVPELIKELNSLGRPDILVMCGGVIPP  697 (762)
T ss_dssp             HHHHHTTCEE-EECCTTCCHHHHHHHHHH--TTCSEEEEEECSSC-----HHHHHHHHHHHHHHTTCTTSEEEEEESCCG
T ss_pred             HHHHhCCeEE-eeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHH-----HHHHHHHHHHHHHhcCCCCCEEEEeCCCCc
Confidence            3566789887 45666666655 455554  68999887544432     12334455677777654 566655553555


Q ss_pred             hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554          114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus       114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      +....+.+.|+|.+..     ...|..+.+..+++.++..
T Consensus       698 ~d~~~l~~~GaD~~f~-----pgtd~~e~~~~i~~~l~~~  732 (762)
T 2xij_A          698 QDYEFLFEVGVSNVFG-----PGTRIPKAAVQVLDDIEKC  732 (762)
T ss_dssp             GGHHHHHHHTCCEEEC-----TTCCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHhCCCCEEeC-----CCCCHHHHHHHHHHHHHHH
Confidence            5688889999998743     1136677777777766543

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*

Probab=94.29  E-value=0.36  Score=38.68  Aligned_cols=116  Identities=15%  Similarity=0.301  Sum_probs=74.6

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHH-hhHhcCC--CCCeEEE
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVY-PLVEGAN--PVEMVLV   73 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~-~~~~~~~--~~d~vl~   73 (157)
                      +|+.+.+   .+.+.|.+.+-+|.-.. ... .+.++.+|+. |  +.+.+..|-....+... ++++.+.  .++++  
T Consensus       141 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~i--  217 (369)
T 2p8b_A          141 DPENMAEEAASMIQKGYQSFKMKVGTNVKED-VKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWI--  217 (369)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCSCHHHH-HHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSCE--
T ss_pred             ChHHHHHHHHHHHHcCcCEEEEEeCCCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEE--
Confidence            5666654   44678999999986432 223 5778888874 4  44555556555555554 4543212  23433  


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS  131 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS  131 (157)
                              .|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+--
T Consensus       218 --------EqP~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~  268 (369)
T 2p8b_A          218 --------EQPVIADDIDAMAHIRSKT-DLPLMIDEGLKSSREMRQIIKLEAADKVNIKL  268 (369)
T ss_dssp             --------ECCBCTTCHHHHHHHHHTC-CSCEEESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred             --------ECCCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHhCCCCEEEeec
Confidence                    2555555677777777764 79999999996 68888877655 89887643

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}

Probab=94.28  E-value=0.48  Score=38.48  Aligned_cols=116  Identities=13%  Similarity=0.091  Sum_probs=80.3

Q ss_pred             HHHHHHh----CCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--
Q 031554            8 YVEPLGK----AGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--   64 (157)
Q Consensus         8 ~i~~~~~----~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--   64 (157)
                      .++.+.+    +|++.|++..-+.+-               .+.+.++++|++|..+-+..  ...++.+.+.++.+.  
T Consensus        88 di~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~  167 (370)
T 3rmj_A           88 DIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVI  167 (370)
T ss_dssp             HHHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHH
Confidence            3455555    899999988655432               11347788888998876654  234555544333321  


Q ss_pred             CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC---CcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           65 ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS---LDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        65 ~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~---~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      -.++|.|.+    |.+.|-.......+.++.+++..++   .+|.+    |-|.-..|.-..+++||+.|
T Consensus       168 ~~Ga~~i~l----~DT~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~aGa~~v  233 (370)
T 3rmj_A          168 EAGATTINI----PDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQV  233 (370)
T ss_dssp             HHTCCEEEE----ECSSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEE
T ss_pred             HcCCCEEEe----cCccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHHhCCCEE
Confidence            147888766    5666776666778889999988775   67776    78888888888899999976

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=94.23  E-value=0.48  Score=38.05  Aligned_cols=116  Identities=11%  Similarity=0.060  Sum_probs=75.6

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcC--CCCCeEEE
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGA--NPVEMVLV   73 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl~   73 (157)
                      +|+.+.+.   +.+.|.+.+=+|.-.  .+.. .+.++.+|+.   ++.+.+..|-..+.+...++++.+  ..++++  
T Consensus       146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~-~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--  222 (371)
T 2ovl_A          146 PVADLKTQADRFLAGGFRAIKMKVGRPDLKED-VDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWI--  222 (371)
T ss_dssp             CHHHHHHHHHHHHHTTCSCEEEECCCSSHHHH-HHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEE--
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--
Confidence            56666544   457899999998643  1223 5778888874   456677777666666544444310  245554  


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS  131 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS  131 (157)
                              .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+.-
T Consensus       223 --------EqP~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~  273 (371)
T 2ovl_A          223 --------EEPTIPDDLVGNARIVRES-GHTIAGGENLHTLYDFHNAVRAGSLTLPEPDV  273 (371)
T ss_dssp             --------ECCSCTTCHHHHHHHHHHH-CSCEEECTTCCSHHHHHHHHHHTCCSEECCCT
T ss_pred             --------ECCCCcccHHHHHHHHhhC-CCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCc
Confidence                    2445555566677777653 68999999996 68888877665 78886653

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=94.18  E-value=1.3  Score=33.35  Aligned_cols=109  Identities=12%  Similarity=0.069  Sum_probs=67.0

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC----------CCHHhHHhhHhcCCCCCeEEEE
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG----------TSVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~----------t~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      |......+.+.||..+.+.      . .+.++.+|+.--.+-+.++..          -..+.+..+++  .++|.|++.
T Consensus        38 ~~~~A~a~~~~Ga~~i~~~------~-~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~--~Gad~V~l~  108 (232)
T 3igs_A           38 VAAMALAAEQAGAVAVRIE------G-IDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQ--AGAAIIAVD  108 (232)
T ss_dssp             HHHHHHHHHHTTCSEEEEE------S-HHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHH--HTCSEEEEE
T ss_pred             HHHHHHHHHHCCCeEEEEC------C-HHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHH--cCCCEEEEC
Confidence            5667788899999999983      2 578899998744444533321          12345555554  589999876


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      +..- . ...+..+.   ++++++.  +..+.++= -+.+.+..+.++|||.+.++
T Consensus       109 ~~~~-~-~p~~l~~~---i~~~~~~--g~~v~~~v-~t~eea~~a~~~Gad~Ig~~  156 (232)
T 3igs_A          109 GTAR-Q-RPVAVEAL---LARIHHH--HLLTMADC-SSVDDGLACQRLGADIIGTT  156 (232)
T ss_dssp             CCSS-C-CSSCHHHH---HHHHHHT--TCEEEEEC-CSHHHHHHHHHTTCSEEECT
T ss_pred             cccc-C-CHHHHHHH---HHHHHHC--CCEEEEeC-CCHHHHHHHHhCCCCEEEEc
Confidence            4320 0 01122333   4444443  55555542 35788899999999999653

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=94.18  E-value=0.85  Score=34.46  Aligned_cols=133  Identities=12%  Similarity=0.102  Sum_probs=81.2

Q ss_pred             hHHHHHHHHhCCCCEEEEccc-C--Ccc-hH-HHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554            5 PLDYVEPLGKAGASGFTFHVE-I--SKD-NW-QELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE   77 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e-~--~~~-~~-~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~   77 (157)
                      -.+.++.+.++|+|++++-.- .  .++ +. ...++.+|+.-  ..+-+-+...+|.+.+..+.   . +|++.+   |
T Consensus        20 l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~---~-Ad~itv---H   92 (227)
T 1tqx_A           20 LAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLK---T-SNQLTF---H   92 (227)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCT---T-SSEEEE---E
T ss_pred             HHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHH---h-CCEEEE---e
Confidence            356677888899999877531 0  011 10 48999999974  55666676677777777776   5 898865   4


Q ss_pred             CCCCCcccchhHHHHHH---HHHhhCCCCcEEEEcCC--CHhhHHHHHHcC-CCEEEEccc--ccCC----CCHHHHHHH
Q 031554           78 PGFGGQKFMPEMMDKVR---SLRNRYPSLDIEVDGGL--GPSTIAEAASAG-ANCIVAGSS--VFGA----PEPAHVISL  145 (157)
Q Consensus        78 pG~~gq~~~~~~~~ki~---~l~~~~~~~~I~vdGGI--~~~~i~~~~~~G-ad~vV~GSa--i~~~----~d~~~~~~~  145 (157)
                      ++...    +...+-++   ++|+.  +..+.++=..  ..+.+..+.+.| +|.+.+.|-  =|..    +...+.+++
T Consensus        93 ~ea~~----~~~~~~i~~~~~i~~~--G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~  166 (227)
T 1tqx_A           93 FEALN----EDTERCIQLAKEIRDN--NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSF  166 (227)
T ss_dssp             GGGGT----TCHHHHHHHHHHHHTT--TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHH
T ss_pred             ecCCc----cCHHHHHHHHHHHHHc--CCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHH
Confidence            43221    01223355   66665  4666665533  357788888876 999988872  2322    233455556


Q ss_pred             HHHHH
Q 031554          146 MRKSV  150 (157)
Q Consensus       146 l~~~~  150 (157)
                      +++.+
T Consensus       167 lr~~~  171 (227)
T 1tqx_A          167 LRKKY  171 (227)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            65543

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=94.13  E-value=0.44  Score=38.72  Aligned_cols=119  Identities=12%  Similarity=0.078  Sum_probs=67.2

Q ss_pred             HHHHHHHhCCCCEEE--EcccCCcchHH-HHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC--
Q 031554            7 DYVEPLGKAGASGFT--FHVEISKDNWQ-ELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--   80 (157)
Q Consensus         7 ~~i~~~~~~gad~v~--vh~e~~~~~~~-~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~--   80 (157)
                      .+.+.+.++|.-+.+  ... +.+++ + ......|.. +......+++..+.+...+..+. -+.|.+.+ .++|..  
T Consensus       107 ~lA~~a~~~G~~~~vGs~~~-~le~~-~~~~~~v~r~~P~~~~ianig~~~~~e~~~~~ve~-~~adal~i-hln~~qe~  182 (365)
T 3sr7_A          107 KLAQVADTCGLLFVTGSYST-ALKNP-DDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRD-LQPLFLQV-HINLMQEL  182 (365)
T ss_dssp             HHHHHHHHHTCCEEC-------------------------CCEEEEEETTSCHHHHHHHHHH-HCCSCEEE-EECHHHHH
T ss_pred             HHHHHHHHcCCCeecccccc-cccCc-cccceEehhhCCCCcEEEEeCCCCCHHHHHHHHHh-cCCCEEEE-eccccccc
Confidence            356777788876654  111 11122 1 111112222 33334458888888766655543 47787765 344310  


Q ss_pred             ---CCcccchhHHHHHHHHHhhCCCCcEEEEcC---CCHhhHHHHHHcCCCEEEEc
Q 031554           81 ---GGQKFMPEMMDKVRSLRNRYPSLDIEVDGG---LGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        81 ---~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG---I~~~~i~~~~~~Gad~vV~G  130 (157)
                         .|..-....++.|+++++.. +++|.|-|=   .+.+.+..+.++|||.|+++
T Consensus       183 ~~p~Gd~~~~~~~~~I~~l~~~~-~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~  237 (365)
T 3sr7_A          183 LMPEGEREFRSWKKHLSDYAKKL-QLPFILKEVGFGMDVKTIQTAIDLGVKTVDIS  237 (365)
T ss_dssp             TSSSSCCCCHHHHHHHHHHHHHC-CSCEEEEECSSCCCHHHHHHHHHHTCCEEECC
T ss_pred             cCCCCCCcHHHHHHHHHHHHHhh-CCCEEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence               12221224567899999874 678887742   68999999999999999985

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*

Probab=94.13  E-value=1.8  Score=34.55  Aligned_cols=118  Identities=13%  Similarity=0.145  Sum_probs=76.1

Q ss_pred             cChHHHHH---HHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            3 TNPLDYVE---PLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         3 ~~p~~~i~---~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      .+|+...+   .+.+.|...+=+..-.. +.. .+.++++|+. |  +...+..|-....+...++++.+...+.-.+  
T Consensus       138 ~~~~~~~~~a~~~~~~G~~~~K~K~g~~~~~d-~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~~i--  214 (354)
T 3jva_A          138 DEPNVMAQKAVEKVKLGFDTLKIKVGTGIEAD-IARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELV--  214 (354)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEECCSCHHHH-HHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEEEE--
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEEeCCCHHHH-HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--
Confidence            35665554   44568999999886432 233 5778888874 4  5556666777777765555542133332222  


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEc
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAG  130 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~G  130 (157)
                       +     |++.+..++-.+++++.. +++|+.|+.+. .+.+.++++. .+|++.+-
T Consensus       215 -E-----qP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k  264 (354)
T 3jva_A          215 -E-----QPVKRRDLEGLKYVTSQV-NTTIMADESCFDAQDALELVKKGTVDVINIK  264 (354)
T ss_dssp             -E-----CCSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             -E-----CCCChhhHHHHHHHHHhC-CCCEEEcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence             2     445555566677777763 79999999998 6888887765 57888664

>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}

Probab=94.11  E-value=0.4  Score=33.92  Aligned_cols=100  Identities=16%  Similarity=0.183  Sum_probs=61.0

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~  112 (157)
                      +-..+.+.|..+..+   .+..+.++.+. . ..+|.|++-...|+.+|       ++-++++++..++.+|. +.+.-+
T Consensus        23 l~~~L~~~g~~v~~~---~~~~~al~~~~-~-~~~dlvl~D~~lp~~~g-------~~~~~~l~~~~~~~~ii~lt~~~~   90 (184)
T 3rqi_A           23 LARGLERRGYAVRQA---HNKDEALKLAG-A-EKFEFITVXLHLGNDSG-------LSLIAPLCDLQPDARILVLTGYAS   90 (184)
T ss_dssp             HHHHHHHTTCEEEEE---CSHHHHHHHHT-T-SCCSEEEECSEETTEES-------HHHHHHHHHHCTTCEEEEEESSCC
T ss_pred             HHHHHHHCCCEEEEe---CCHHHHHHHHh-h-CCCCEEEEeccCCCccH-------HHHHHHHHhcCCCCCEEEEeCCCC
Confidence            334456668765333   23334444333 2 46898887655676544       45667777777777654 556666


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      .+.+....++||+.++.     +.-++.+....+++.+
T Consensus        91 ~~~~~~a~~~Ga~~~l~-----KP~~~~~L~~~i~~~~  123 (184)
T 3rqi_A           91 IATAVQAVKDGADNYLA-----KPANVESILAALQTNA  123 (184)
T ss_dssp             HHHHHHHHHHTCSEEEE-----SSCCHHHHHHHTSTTH
T ss_pred             HHHHHHHHHhCHHHhee-----CCCCHHHHHHHHHHHH
Confidence            78888999999998854     3345555555444433

>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A

Probab=94.10  E-value=0.71  Score=29.90  Aligned_cols=99  Identities=14%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~  112 (157)
                      .-..+++.|..+..+   .+..+.++.+. . ..+|.|++-...|+..       .++-++++++.. +.+ |.+.+.-+
T Consensus        18 l~~~L~~~g~~v~~~---~~~~~al~~~~-~-~~~dlii~D~~~p~~~-------g~~~~~~lr~~~-~~~ii~~t~~~~   84 (120)
T 3f6p_A           18 LEFNLRKEGYEVHCA---HDGNEAVEMVE-E-LQPDLILLDIMLPNKD-------GVEVCREVRKKY-DMPIIMLTAKDS   84 (120)
T ss_dssp             HHHHHHHTTCEEEEE---SSHHHHHHHHH-T-TCCSEEEEETTSTTTH-------HHHHHHHHHTTC-CSCEEEEEESSC
T ss_pred             HHHHHHhCCEEEEEe---CCHHHHHHHHh-h-CCCCEEEEeCCCCCCC-------HHHHHHHHHhcC-CCCEEEEECCCC
Confidence            334566677765432   33344444333 2 4688888755556543       345566666653 444 55666677


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      .+......++||+.++     .+.-++.+....+++.+
T Consensus        85 ~~~~~~~~~~ga~~~l-----~KP~~~~~l~~~i~~~l  117 (120)
T 3f6p_A           85 EIDKVIGLEIGADDYV-----TKPFSTRELLARVKANL  117 (120)
T ss_dssp             HHHHHHHHHTTCCEEE-----EESCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCcceeE-----cCCCCHHHHHHHHHHHH
Confidence            7888888999999874     44456676666666554

>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A

Probab=94.09  E-value=0.3  Score=40.31  Aligned_cols=115  Identities=10%  Similarity=0.109  Sum_probs=74.3

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEE
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m   74 (157)
                      +|+.+.+   .+.+.|.+.+-+|.-.. ... .+.++.+|+. |  +.+.+..|-....+...++++.+.  .++++   
T Consensus       198 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d-~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i---  273 (441)
T 2hxt_A          198 SDEKLVRLAKEAVADGFRTIKLKVGANVQDD-IRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWI---  273 (441)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCSCHHHH-HHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCE---
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEccCCCHHHH-HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCee---
Confidence            4666654   45678999999996532 223 5778888883 4  555666666667666555553211  34443   


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                             .|++.+..++-.+++++...+++|+.|+.++ .+.+.++++.| +|++.+
T Consensus       274 -------EqP~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  323 (441)
T 2hxt_A          274 -------EEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQI  323 (441)
T ss_dssp             -------ECCSCTTCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTCCSEECC
T ss_pred             -------eCCCCHHHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEe
Confidence                   2444455566667777653368999999997 68888887666 787754

>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}

Probab=94.08  E-value=0.86  Score=30.79  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=62.8

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI  111 (157)
                      .+-+.+++.|..+..+   .+..+.+..+. . ..+|.|++-...|+..       .++-++++++..++++|. +.+.-
T Consensus        29 ~l~~~L~~~g~~v~~~---~~~~~a~~~l~-~-~~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~   96 (153)
T 3hv2_A           29 RLQQLLSPLPYTLHFA---RDATQALQLLA-S-REVDLVISAAHLPQMD-------GPTLLARIHQQYPSTTRILLTGDP   96 (153)
T ss_dssp             HHHHHHTTSSCEEEEE---SSHHHHHHHHH-H-SCCSEEEEESCCSSSC-------HHHHHHHHHHHCTTSEEEEECCCC
T ss_pred             HHHHHhcccCcEEEEE---CCHHHHHHHHH-c-CCCCEEEEeCCCCcCc-------HHHHHHHHHhHCCCCeEEEEECCC
Confidence            3444455566654322   23333333333 2 4688887755456533       355667777777777655 45555


Q ss_pred             CHhhHHHHHHcC-CCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          112 GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       112 ~~~~i~~~~~~G-ad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +.+.......+| |+.+     +.+.-++.+....+++.++.
T Consensus        97 ~~~~~~~~~~~g~~~~~-----l~KP~~~~~l~~~i~~~l~~  133 (153)
T 3hv2_A           97 DLKLIAKAINEGEIYRY-----LSKPWDDQELLLALRQALEH  133 (153)
T ss_dssp             CHHHHHHHHHTTCCSEE-----ECSSCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCCcceE-----EeCCCCHHHHHHHHHHHHHH
Confidence            678888899999 8877     44545777777777776654

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=94.08  E-value=0.63  Score=31.76  Aligned_cols=104  Identities=12%  Similarity=0.098  Sum_probs=61.1

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI  111 (157)
                      .+-+.+++.|..+--..  .+..+.+..+.+..+.+|.|++-...|+..       .++-++++++..++.+|. +.+--
T Consensus        51 ~l~~~L~~~g~~v~~~~--~~~~~al~~l~~~~~~~dliilD~~l~~~~-------g~~~~~~lr~~~~~~~ii~ls~~~  121 (157)
T 3hzh_A           51 QLTQIFTSEGFNIIDTA--ADGEEAVIKYKNHYPNIDIVTLXITMPKMD-------GITCLSNIMEFDKNARVIMISALG  121 (157)
T ss_dssp             HHHHHHHHTTCEEEEEE--SSHHHHHHHHHHHGGGCCEEEECSSCSSSC-------HHHHHHHHHHHCTTCCEEEEESCC
T ss_pred             HHHHHHHhCCCeEEEEE--CCHHHHHHHHHhcCCCCCEEEEeccCCCcc-------HHHHHHHHHhhCCCCcEEEEeccC
Confidence            34455666777653122  233333333332101578887744445433       456677777777776654 55556


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      +.+....+.++||+.+     +.+.-++.+....+++.+
T Consensus       122 ~~~~~~~~~~~g~~~~-----l~KP~~~~~l~~~i~~~l  155 (157)
T 3hzh_A          122 KEQLVKDCLIKGAKTF-----IVKPLDRAKVLQRVMSVF  155 (157)
T ss_dssp             CHHHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHh
Confidence            6888889999999987     444446666666665543

>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0

Probab=94.07  E-value=0.77  Score=30.21  Aligned_cols=104  Identities=11%  Similarity=0.007  Sum_probs=63.8

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG-I~  112 (157)
                      +-+.+++.|..+..+-   +..+.+..+. . ..+|.|++-.-.|+..       .++-++++++..++.+|.+-.+ -+
T Consensus        23 l~~~L~~~~~~v~~~~---~~~~a~~~l~-~-~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~   90 (137)
T 3hdg_A           23 LSTIISNHFPEVWSAG---DGEEGERLFG-L-HAPDVIITDIRMPKLG-------GLEMLDRIKAGGAKPYVIVISAFSE   90 (137)
T ss_dssp             HHHHHHTTCSCEEEES---SHHHHHHHHH-H-HCCSEEEECSSCSSSC-------HHHHHHHHHHTTCCCEEEECCCCCC
T ss_pred             HHHHHHhcCcEEEEEC---CHHHHHHHHh-c-cCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCcEEEEecCcC
Confidence            4444555555544332   3333333332 2 3678887744445432       4566777787777777665544 45


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      .+....+.++||+.+     +.+.-++.+....+++.++..+
T Consensus        91 ~~~~~~~~~~g~~~~-----l~kP~~~~~l~~~i~~~~~~~~  127 (137)
T 3hdg_A           91 MKYFIKAIELGVHLF-----LPKPIEPGRLMETLEDFRHIKL  127 (137)
T ss_dssp             HHHHHHHHHHCCSEE-----CCSSCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCccee-----EcCCCCHHHHHHHHHHHHHHHh
Confidence            678888999999976     5555578888788887776543

>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*

Probab=94.02  E-value=0.73  Score=37.52  Aligned_cols=116  Identities=6%  Similarity=0.013  Sum_probs=77.4

Q ss_pred             cChHHHHHHH----HhCCCCEEEEcccC--------CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHh-c-C
Q 031554            3 TNPLDYVEPL----GKAGASGFTFHVEI--------SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVE-G-A   65 (157)
Q Consensus         3 ~~p~~~i~~~----~~~gad~v~vh~e~--------~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~-~-~   65 (157)
                      .+|+...+.+    .+.|...+=+..-.        .+.. .+.++++|+.   ++.+.+..|-....+....+++ + -
T Consensus       138 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~~~~~~~d-~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~  216 (393)
T 4dwd_A          138 RSVDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGD-IAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALED  216 (393)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCCSCCHHHH-HHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEccCCCCcccccCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            4566665444    56799999988643        2334 5677888885   4566677777777765544432 1 0


Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      ..+++|          .|++.+..++-.+++++. .+++|+.|+.+. .+.+.++++.|+|++.+-
T Consensus       217 ~~i~~i----------EqP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~d~v~~k  271 (393)
T 4dwd_A          217 LGYSWF----------EEPVQHYHVGAMGEVAQR-LDITVSAGEQTYTLQALKDLILSGVRMVQPD  271 (393)
T ss_dssp             TTCSEE----------ECCSCTTCHHHHHHHHHH-CSSEEEBCTTCCSHHHHHHHHHHTCCEECCC
T ss_pred             hCCCEE----------ECCCCcccHHHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCEEEeC
Confidence            245555          244555556677777776 379999999998 688888888789988543

>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}

Probab=94.01  E-value=1.1  Score=35.89  Aligned_cols=114  Identities=16%  Similarity=0.097  Sum_probs=72.6

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcC-CCCCeEEEEe
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGA-NPVEMVLVMT   75 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~-~~~d~vl~m~   75 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-.. ... .+.++.+|+. |  +.+.+..|-....+...++++.+ ...+. .+  
T Consensus       146 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i-~i--  221 (371)
T 2ps2_A          146 EPEDMRARVAKYRAKGYKGQSVKISGEPVTD-AKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF-AL--  221 (371)
T ss_dssp             CHHHHHHHHHHHHTTTCCEEEEECCSCHHHH-HHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC-EE--
T ss_pred             CHHHHHHHHHHHHHhChheEEeecCCCHHHH-HHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC-cC--
Confidence            56666544   4578999999996532 223 5778888874 4  45556666666666665555432 23333 22  


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                      -+|      +.  .++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+-
T Consensus       222 E~P------~~--~~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik  269 (371)
T 2ps2_A          222 EAP------CA--TWRECISLRRKT-DIPIIYDELATNEMSIVKILADDAAEGIDLK  269 (371)
T ss_dssp             ECC------BS--SHHHHHHHHTTC-CSCEEESTTCCSHHHHHHHHHHTCCSEEEEE
T ss_pred             cCC------cC--CHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHhCCCCEEEec
Confidence            133      22  355666676653 79999999997 68888877665 7888664

>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A

Probab=93.90  E-value=0.31  Score=39.25  Aligned_cols=112  Identities=12%  Similarity=0.120  Sum_probs=73.3

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEee
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTV   76 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v   76 (157)
                      +|+.+.+   .+.+.|.+.+-+|... ... .+.++++|+.  ++...+..|-....+. .++++.+.  .+++|     
T Consensus       148 ~~~~~~~~a~~~~~~G~~~iKik~~~-~~d-~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~i-----  219 (375)
T 1r0m_A          148 DEQATVDLVRRHVEQGYRRIKLKIKP-GWD-VQPVRATREAFPDIRLTVDANSAYTLAD-AGRLRQLDEYDLTYI-----  219 (375)
T ss_dssp             SHHHHHHHHHHHHHTTCSCEEEECBT-TBS-HHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHTTGGGCCSCE-----
T ss_pred             CHHHHHHHHHHHHHhcccEEEEecCh-HHH-HHHHHHHHHHcCCCeEEEeCCCCCCHHH-HHHHHHHHhCCCcEE-----
Confidence            5665554   4467899999998742 334 5678888885  5667777766555555 44442101  33444     


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                           .|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+
T Consensus       220 -----EqP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  268 (375)
T 1r0m_A          220 -----EQPLAWDDLVDHAELARRI-RTPLCLDESVASASDARKALALGAGGVINL  268 (375)
T ss_dssp             -----ECCSCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHHTSCSEEEE
T ss_pred             -----ECCCCcccHHHHHHHHHhC-CCCEEecCccCCHHHHHHHHHhCCCCEEEE
Confidence                 2445555556667777663 68999999997 68888887766 788866

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}

Probab=93.89  E-value=1.2  Score=36.07  Aligned_cols=116  Identities=13%  Similarity=0.100  Sum_probs=75.4

Q ss_pred             ChHHHHHH---HHhCCCCEEEEc---ccC-C-cchHHHHHHHHHHc-C--CceEEEecCCC--CHHhHHhhHhc--CCCC
Q 031554            4 NPLDYVEP---LGKAGASGFTFH---VEI-S-KDNWQELVQRIKSK-G--MRPGVALKPGT--SVEEVYPLVEG--ANPV   68 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh---~e~-~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t--~~~~~~~~~~~--~~~~   68 (157)
                      +|+.+.+.   +.+.|.+.+-+|   .-. . ... .+.++.+|+. |  +.+.+..|-..  ..+...++++.  -..+
T Consensus       145 ~~~~~~~~a~~~~~~Gf~~iKik~spvG~~~~~~~-~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i  223 (401)
T 2hzg_A          145 TPQETLERARAARRDGFAAVKFGWGPIGRGTVAAD-ADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGV  223 (401)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEESTTTTSSCHHHH-HHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEcCCCCCCCHHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCC
Confidence            56666544   467899999998   321 1 233 6788888884 4  55566666666  66554444321  0245


Q ss_pred             CeEEEEeeeCCCCCcccchhHHHHHHHHHh-hCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554           69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRN-RYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS  131 (157)
Q Consensus        69 d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~-~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS  131 (157)
                      ++|          .|++.+..++-.+++++ . .+++|+.|+.+. .+.+.++++.| +|++.+--
T Consensus       224 ~~i----------EqP~~~~d~~~~~~l~~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~  278 (401)
T 2hzg_A          224 LWL----------EEPFDAGALAAHAALAGRG-ARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDC  278 (401)
T ss_dssp             SEE----------ECCSCTTCHHHHHHHHTTC-CSSEEEECTTCSSHHHHHHHHHHSCCSEEEECH
T ss_pred             CEE----------ECCCCccCHHHHHHHHhhC-CCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCc
Confidence            554          24445556777777777 4 379999999996 68888877665 89887643

>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}

Probab=93.88  E-value=0.43  Score=38.63  Aligned_cols=116  Identities=15%  Similarity=0.174  Sum_probs=73.6

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccC-------------------CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhH
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEI-------------------SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEV   58 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~-------------------~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~   58 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-.                   .... .+.++++|+. |  +.+.+..|-....+..
T Consensus       137 ~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~-~e~v~avr~a~G~d~~l~vD~n~~~~~~~a  215 (392)
T 2poz_A          137 TPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELA-YRRVKAVRDAAGPEIELMVDLSGGLTTDET  215 (392)
T ss_dssp             SHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHH-HHHHHHHHHHHCTTSEEEEECTTCSCHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence            57666544   467899999998641                   1123 5778888873 4  5556666666666655


Q ss_pred             HhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           59 YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        59 ~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                      .++++.+...+...+   +     |++.+..++-.+++++.. +++|+.|+.+. .+.++++++.| +|++.+
T Consensus       216 ~~~~~~l~~~~i~~i---E-----~P~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  279 (392)
T 2poz_A          216 IRFCRKIGELDICFV---E-----EPCDPFDNGALKVISEQI-PLPIAVGERVYTRFGFRKIFELQACGIIQP  279 (392)
T ss_dssp             HHHHHHHGGGCEEEE---E-----CCSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHTTTCCSEECC
T ss_pred             HHHHHHHHhcCCCEE---E-----CCCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence            444431133332222   2     344455566677777764 79999999997 68888888776 787744

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*

Probab=93.87  E-value=0.27  Score=38.76  Aligned_cols=123  Identities=20%  Similarity=0.232  Sum_probs=76.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc-------------hHHHHHHHHHHcCCceEEEe--c-CCCCHHhHHhhHhc--CCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD-------------NWQELVQRIKSKGMRPGVAL--K-PGTSVEEVYPLVEG--ANP   67 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~-------------~~~~~i~~ir~~g~~~gl~l--~-~~t~~~~~~~~~~~--~~~   67 (157)
                      .+.++.+.++|+|.+.+..|+.+.             .+.+.++.+++.|+.++..+  . |....+.+.+.++.  .-+
T Consensus       142 ~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~  221 (348)
T 3iix_A          142 REYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHD  221 (348)
T ss_dssp             HHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhcC
Confidence            457888999999999998887631             12556777888999877643  3 34555544433321  014


Q ss_pred             CCeEEEEeee--CCCCCcccc----hhHHHHHHHHHhhCCCCcEEEEcC---CCHhhHHHHHHcCCCEEE
Q 031554           68 VEMVLVMTVE--PGFGGQKFM----PEMMDKVRSLRNRYPSLDIEVDGG---LGPSTIAEAASAGANCIV  128 (157)
Q Consensus        68 ~d~vl~m~v~--pG~~gq~~~----~~~~~ki~~l~~~~~~~~I~vdGG---I~~~~i~~~~~~Gad~vV  128 (157)
                      ++.+.+....  ||+.-+...    .+.++.+..+|-..|+..|-+.++   +.++.......+|||.+.
T Consensus       222 ~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~i~  291 (348)
T 3iix_A          222 FDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIM  291 (348)
T ss_dssp             CSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCBCCHHHHHHSTTHHHHHHTTTCCEEC
T ss_pred             CCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHHHHCCCCCchhcchhhhcCHHHHHHHHhcCCcEEe
Confidence            6766665544  454322221    234445666666677766666554   455666778899999986

>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*

Probab=93.83  E-value=1.4  Score=34.86  Aligned_cols=127  Identities=20%  Similarity=0.223  Sum_probs=78.7

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHh-c-CCCCCeEEEEeeeC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD----NWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVE-G-ANPVEMVLVMTVEP   78 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~p   78 (157)
                      ...++.+...++|+|+|-.-+...    + .++...+++.|+.+..=+ +-+.+.+.++.++. . ..+++-|+.++-+|
T Consensus        32 ~~~~~~L~~~~pd~vsVT~~~~g~~r~~t-~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~  110 (310)
T 3apt_A           32 FRTLEELKAFRPAFVSITYGAMGSTRERS-VAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDP  110 (310)
T ss_dssp             HHHHHHHGGGCCSEEEECCCSTTCSHHHH-HHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             HHHHHHHhcCCCCEEEEecCCCCCcchhH-HHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            445667778899999998644332    3 556677887898887744 33444444544443 1 15888898887765


Q ss_pred             CCC-C------cccchhHHHHHHHHHhhCCC-CcEEEEcCC-------CH----hhHHHHHHcCCCEEEEcccccC
Q 031554           79 GFG-G------QKFMPEMMDKVRSLRNRYPS-LDIEVDGGL-------GP----STIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        79 G~~-g------q~~~~~~~~ki~~l~~~~~~-~~I~vdGGI-------~~----~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      -.+ |      +.|. +..+-|+.+|+...+ +.|.|.|--       +.    +.+.+=+++|||.+ +-=.+|.
T Consensus       111 p~~~g~~~~~~~~f~-~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d~~~Lk~Kv~aGAdf~-iTQ~ffD  184 (310)
T 3apt_A          111 PRGERVFRPHPEGFR-YAAELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFA-ITQLFFN  184 (310)
T ss_dssp             STTCCSCCCCTTSCS-SHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHHHHHHHHHHHHHCSEE-EECCCSC
T ss_pred             CCCCCCCCCCCCCCC-CHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEE-EecccCC
Confidence            322 2      1254 677888888887334 888887632       22    22333368999955 4455664

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=93.79  E-value=0.93  Score=30.15  Aligned_cols=109  Identities=8%  Similarity=0.062  Sum_probs=67.0

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcE-EEE
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDI-EVD  108 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I-~vd  108 (157)
                      ..+-+.+++.|...-+..  .++.+.+...++. ..+|.|++-...|+.       ..++-++++++  ..++++| .+.
T Consensus        19 ~~l~~~L~~~~~~~~v~~--~~~~~~a~~~l~~-~~~dlii~D~~l~~~-------~g~~~~~~lr~~~~~~~~pii~~s   88 (144)
T 3kht_A           19 ALIRRVLDRKDIHCQLEF--VDNGAKALYQVQQ-AKYDLIILDIGLPIA-------NGFEVMSAVRKPGANQHTPIVILT   88 (144)
T ss_dssp             HHHHHHHHHTTCCEEEEE--ESSHHHHHHHHTT-CCCSEEEECTTCGGG-------CHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred             HHHHHHHHhcCCCeeEEE--ECCHHHHHHHhhc-CCCCEEEEeCCCCCC-------CHHHHHHHHHhcccccCCCEEEEe
Confidence            344455666777643332  2333333334432 467888764333432       34667777877  4566664 456


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHHHHhh
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGAP-EPAHVISLMRKSVEDAQK  155 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~~l~~~~~~~~~  155 (157)
                      +.-+.+.+.++.++||+.+     +.+.- ++.+....+++.++...+
T Consensus        89 ~~~~~~~~~~~~~~ga~~~-----l~Kp~~~~~~l~~~i~~~l~~~~~  131 (144)
T 3kht_A           89 DNVSDDRAKQCMAAGASSV-----VDKSSNNVTDFYGRIYAIFSYWLT  131 (144)
T ss_dssp             TTCCHHHHHHHHHTTCSEE-----EECCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCCEE-----EECCCCcHHHHHHHHHHHHHHHHh
Confidence            6677888889999999987     44455 777777788877776443

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*

Probab=93.79  E-value=0.55  Score=38.22  Aligned_cols=115  Identities=11%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             ChHHHHHH---HHhCCCCEEEEccc-----CC--------------------cchHHHHHHHHHHc-C--CceEEEecCC
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVE-----IS--------------------KDNWQELVQRIKSK-G--MRPGVALKPG   52 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e-----~~--------------------~~~~~~~i~~ir~~-g--~~~gl~l~~~   52 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-     ..                    ... .+.++.+|+. |  +.+.+..|-.
T Consensus       150 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~-~e~v~avR~a~G~d~~l~vDan~~  228 (410)
T 2gl5_A          150 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMG-EARIAAMREAMGDDADIIVEIHSL  228 (410)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHH-HHHHHHHHHHHCSSSEEEEECTTC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHH-HHHHHHHHHhcCCCCEEEEECCCC
Confidence            57767654   45789999999862     11                    123 5778888883 4  4555566666


Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV  128 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV  128 (157)
                      ...+...++++.+...+...+   +     |++.+..++-.+++++.. +++|+.|+.+. .+.++++++.| +|++.
T Consensus       229 ~~~~~ai~~~~~l~~~~i~~i---E-----~P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~  297 (410)
T 2gl5_A          229 LGTNSAIQFAKAIEKYRIFLY---E-----EPIHPLNSDNMQKVSRST-TIPIATGERSYTRWGYRELLEKQSIAVAQ  297 (410)
T ss_dssp             SCHHHHHHHHHHHGGGCEEEE---E-----CSSCSSCHHHHHHHHHHC-SSCEEECTTCCTTHHHHHHHHTTCCSEEC
T ss_pred             CCHHHHHHHHHHHHhcCCCeE---E-----CCCChhhHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEe
Confidence            666554444431133332221   2     334445566677777764 79999999996 68888888776 67773

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A

Probab=93.78  E-value=0.38  Score=38.50  Aligned_cols=117  Identities=15%  Similarity=0.173  Sum_probs=74.2

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCC--CCeEEE
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANP--VEMVLV   73 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~--~d~vl~   73 (157)
                      +|+.+.+.   +.+.|.+.+=+|.-.  .... .+.++++|+.   ++.+.+..|-....+...++++.+..  .+...+
T Consensus       140 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~d-~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~i  218 (366)
T 1tkk_A          140 SPEEMAADAENYLKQGFQTLKIKVGKDDIATD-IARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELV  218 (366)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEECCSSCHHHH-HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCeEEEEeCCCCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEE
Confidence            56665544   456799999998653  2223 5778888874   45566666766666655444431022  222222


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                              .|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+-
T Consensus       219 --------EqP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik  268 (366)
T 1tkk_A          219 --------EQPVHKDDLAGLKKVTDAT-DTPIMADESVFTPRQAFEVLQTRSADLINIK  268 (366)
T ss_dssp             --------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             --------ECCCCcccHHHHHHHHhhC-CCCEEEcCCCCCHHHHHHHHHhCCCCEEEee
Confidence                    2445555666777777764 79999999997 68888877655 8888664

>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}

Probab=93.77  E-value=0.43  Score=39.28  Aligned_cols=116  Identities=10%  Similarity=0.103  Sum_probs=74.1

Q ss_pred             cCh-HHHHHH---HHhCCCCEEEEcccC-CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhc--CCCCCeEE
Q 031554            3 TNP-LDYVEP---LGKAGASGFTFHVEI-SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEG--ANPVEMVL   72 (157)
Q Consensus         3 ~~p-~~~i~~---~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl   72 (157)
                      .+| +.+.+.   +.+.|.+.+-+|.-. .... .+.++++|+. |  +.+.+..|-....+...++++.  -..++++ 
T Consensus       183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d-~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~i-  260 (428)
T 3bjs_A          183 YQPKESLAEEAQEYIARGYKALKLRIGDAARVD-IERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGWL-  260 (428)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSEEEEECCSCHHHH-HHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSCE-
T ss_pred             CChHHHHHHHHHHHHHCCCCEEEECCCCCHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE-
Confidence            356 655544   457799999998653 2233 6778888885 4  4555566666666554444321  0245554 


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                               .|++.+..++-.+++++....++|+.|+.+. .+.+.++++.| +|++.+
T Consensus       261 ---------EqP~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  310 (428)
T 3bjs_A          261 ---------EEPFACNDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQP  310 (428)
T ss_dssp             ---------ECCSCTTCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECC
T ss_pred             ---------ECCCCccCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEe
Confidence                     2445555677777777764238999999996 68899988777 566543

>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*

Probab=93.76  E-value=0.34  Score=37.06  Aligned_cols=71  Identities=18%  Similarity=0.290  Sum_probs=42.5

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh----hCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCC
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE  138 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~----~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d  138 (157)
                      +.+.+.-+|+.-|-..........+++++++++    .++.++ .+.+|-|.+ ....++.|++.+=+||+||+..+
T Consensus       157 ~~l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~~l~~~~~~~~-~LSmGmS~d-~~~Ai~~G~t~vRvGt~iFg~r~  231 (245)
T 3sy1_A          157 PRLRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHID-TLALGQSDD-MEAAIAAGSTMVAIGTAIFGARD  231 (245)
T ss_dssp             TTEEEEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTSTTCC-EEECCCSTT-HHHHHHHTCCEEEESHHHHCC--
T ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCC-EEeccCcHh-HHHHHHcCCCEEECchHHhCCCC
Confidence            567778888754432221112234566666554    233444 477777754 23335789999999999998654

>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*

Probab=93.76  E-value=0.37  Score=40.17  Aligned_cols=113  Identities=12%  Similarity=0.101  Sum_probs=70.7

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccC---------------------CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhH
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEI---------------------SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLV   62 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~---------------------~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~   62 (157)
                      ||..+++.+.++||.++.+-..-                     ..+.+.++.+++|++|+++|+-.++-+   ..    
T Consensus        79 Dp~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~krDlv~el~~A~rk~Glk~GlY~S~~d---w~----  151 (450)
T 2wvv_A           79 DAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDVHFYFSVMD---WS----  151 (450)
T ss_dssp             CHHHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEEEEEEESCC---TT----
T ss_pred             CHHHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCCCChHHHHHHHHHHcCCeEEEEecHHH---hc----
Confidence            79999999999999999885321                     124568999999999999999887532   11    


Q ss_pred             hcCCCCCeEEEEeeeCCCC-----CcccchhHHHHHHHHHhhC-CCCcEEEEcCCCHh------h----HHHHHHcCCCE
Q 031554           63 EGANPVEMVLVMTVEPGFG-----GQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPS------T----IAEAASAGANC  126 (157)
Q Consensus        63 ~~~~~~d~vl~m~v~pG~~-----gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~------~----i~~~~~~Gad~  126 (157)
                          ..++-.    +|.+.     -+.|....+..+++|-..+ .--.|+.||+-...      .    ...+.+.-.++
T Consensus       152 ----~p~y~~----~~~~~~~~~~~~~y~~~~~~Ql~ELlt~YG~~d~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~  223 (450)
T 2wvv_A          152 ----NPDYRY----DIKSKEDSIAFSRFLEFTDNQLKELATRYPTVKDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGV  223 (450)
T ss_dssp             ----CTTCCS----SCCSHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEESCCSHHHHHTHHHHHHHHHHHHHHSTTC
T ss_pred             ----CCcccc----cccccccccchHHHHHHHHHHHHHHHHcCCCcCEEEEcCCCCcCcchhhHHHHHHHHHHHHhCCcE
Confidence                111110    12211     1233444566677776665 33568999987531      1    22334455677


Q ss_pred             EEEcc
Q 031554          127 IVAGS  131 (157)
Q Consensus       127 vV~GS  131 (157)
                      +|-.+
T Consensus       224 vv~~r  228 (450)
T 2wvv_A          224 AINSR  228 (450)
T ss_dssp             EEBGG
T ss_pred             EEEcc
Confidence            66544

>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*

Probab=93.68  E-value=0.4  Score=40.34  Aligned_cols=48  Identities=21%  Similarity=0.407  Sum_probs=39.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcc---c----------------CC-----cchHHHHHHHHHHcCCceEEEecC
Q 031554            4 NPLDYVEPLGKAGASGFTFHV---E----------------IS-----KDNWQELVQRIKSKGMRPGVALKP   51 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~---e----------------~~-----~~~~~~~i~~ir~~g~~~gl~l~~   51 (157)
                      ||..+++.+.++|+.++.+-.   +                .+     .+.+.++.+++|++|+++|+-.++
T Consensus        63 d~~~W~~~~k~aGakyvvlt~kHHdGF~lw~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~gl~~g~Y~S~  134 (478)
T 3ues_A           63 DVDQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLSP  134 (478)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CHHHHHHHHHHcCCCEEEEeEEecCCccccCCCCCCcccccCCccCCCCCHHHHHHHHHHHcCCeEEEEeCh
Confidence            799999999999999998731   1                11     245578999999999999998865

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=93.68  E-value=0.91  Score=29.66  Aligned_cols=104  Identities=17%  Similarity=0.121  Sum_probs=59.4

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGG  110 (157)
                      ..+-+.+.+.|..+-...  .+..+.+..+.+  ..+|.|++-...|+..       .++-++++++..++.+|. +.+.
T Consensus        15 ~~l~~~L~~~g~~v~~~~--~~~~~a~~~~~~--~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~   83 (134)
T 3f6c_A           15 AAIRNLLIKNDIEILAEL--TEGGSAVQRVET--LKPDIVIIDVDIPGVN-------GIQVLETLRKRQYSGIIIIVSAK   83 (134)
T ss_dssp             HHHHHHHHHTTEEEEEEE--SSSTTHHHHHHH--HCCSEEEEETTCSSSC-------HHHHHHHHHHTTCCSEEEEEECC
T ss_pred             HHHHHHHhhCCcEEEEEc--CCHHHHHHHHHh--cCCCEEEEecCCCCCC-------hHHHHHHHHhcCCCCeEEEEeCC
Confidence            344445666675543223  222222332222  3578887754445533       456677777777777654 5555


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      -+.+...+..++|++.++.     +.-++.+....+++.++
T Consensus        84 ~~~~~~~~~~~~g~~~~l~-----kp~~~~~l~~~i~~~~~  119 (134)
T 3f6c_A           84 NDHFYGKHCADAGANGFVS-----KKEGMNNIIAAIEAAKN  119 (134)
T ss_dssp             ---CTHHHHHHTTCSEEEE-----GGGCTHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHhCCCEEEe-----CCCCHHHHHHHHHHHHC
Confidence            6677888899999998754     33355666666666554

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*

Probab=93.67  E-value=0.51  Score=39.11  Aligned_cols=118  Identities=24%  Similarity=0.273  Sum_probs=78.9

Q ss_pred             HHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEec--CCCCHHhH----HhhHhcCC
Q 031554            8 YVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALK--PGTSVEEV----YPLVEGAN   66 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~--~~t~~~~~----~~~~~~~~   66 (157)
                      -++.+.++|++.|++-.-+.+               +.+.+.++++|++|.++-+.+.  ..++.+.+    +.+.+  .
T Consensus       115 di~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~--~  192 (423)
T 3ivs_A          115 DARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDK--I  192 (423)
T ss_dssp             HHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHH--H
T ss_pred             hHHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHH--h
Confidence            368889999999988532211               1124678889999999877653  12344333    33333  3


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ++|.|.+    |.+.|........+.++.+++.. +.+|.+    |-|.-..|.-..+++||+.|  -++++
T Consensus       193 Ga~~i~l----~DTvG~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~aGa~~v--d~ti~  257 (423)
T 3ivs_A          193 GVNRVGI----ADTVGCATPRQVYDLIRTLRGVV-SCDIECHFHNDTGMAIANAYCALEAGATHI--DTSIL  257 (423)
T ss_dssp             CCSEEEE----EETTSCCCHHHHHHHHHHHHHHC-SSEEEEEEBCTTSCHHHHHHHHHHTTCCEE--EEBGG
T ss_pred             CCCcccc----CCccCcCCHHHHHHHHHHHHhhc-CCeEEEEECCCCchHHHHHHHHHHhCCCEE--EEecc
Confidence            6787765    55556665666777788888764 566665    78888888888899999965  44454

>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B

Probab=93.64  E-value=1.1  Score=36.03  Aligned_cols=115  Identities=12%  Similarity=0.084  Sum_probs=75.1

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-.  .... .+.++++|+. |  +.+.+..|-....+...++++.+. .+. .   
T Consensus       145 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~i-~---  218 (378)
T 2qdd_A          145 TPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQD-IARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-ARD-W---  218 (378)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEECCSSCHHHH-HHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CCC-E---
T ss_pred             CHHHHHHHHHHHHHHhhhheeecCCCCChHHH-HHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CCc-E---
Confidence            56666544   457799999998653  2233 6788888884 4  555566666667777777774212 222 1   


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccc
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSS  132 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSa  132 (157)
                      +     .|++.  .++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+--.
T Consensus       219 i-----EqP~~--d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~  269 (378)
T 2qdd_A          219 I-----EQPCQ--TLDQCAHVARRV-ANPIMLDECLHEFSDHLAAWSRGACEGVKIKPN  269 (378)
T ss_dssp             E-----ECCSS--SHHHHHHHHTTC-CSCEEECTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred             E-----EcCCC--CHHHHHHHHHhC-CCCEEECCCcCCHHHHHHHHHhCCCCEEEeccc
Confidence            2     23333  456667777653 79999999996 68888877655 898877543

>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}

Probab=93.56  E-value=0.32  Score=39.02  Aligned_cols=112  Identities=11%  Similarity=0.112  Sum_probs=72.3

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEee
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTV   76 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v   76 (157)
                      +|+.+++.   +.+.|.+.+-+|... ... .+.++++|+.  ++...+..|-....+. .++++.+.  .+++|     
T Consensus       141 ~~~~~~~~a~~~~~~G~~~iKik~~~-~~d-~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~i-----  212 (369)
T 2zc8_A          141 SVEDTLRVVERHLEEGYRRIKLKIKP-GWD-YEVLKAVREAFPEATLTADANSAYSLAN-LAQLKRLDELRLDYI-----  212 (369)
T ss_dssp             SHHHHHHHHHHHHHTTCSCEEEECBT-TBS-HHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHGGGGGCCSCE-----
T ss_pred             CHHHHHHHHHHHHHhhhheeeeecCh-hHH-HHHHHHHHHHcCCCeEEEecCCCCCHHH-HHHHHHHHhCCCcEE-----
Confidence            56655544   467899999998742 344 5678888875  5666777765555554 44442101  33444     


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                           .|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+
T Consensus       213 -----EqP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  261 (369)
T 2zc8_A          213 -----EQPLAYDDLLDHAKLQREL-STPICLDESLTGAEKARKAIELGAGRVFNV  261 (369)
T ss_dssp             -----ECCSCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             -----ECCCCcccHHHHHHHHhhC-CCCEEEcCccCCHHHHHHHHHhCCCCEEEE
Confidence                 2444444555666666653 68999999987 68888888777 788755

>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}

Probab=93.56  E-value=1.2  Score=33.06  Aligned_cols=102  Identities=15%  Similarity=0.111  Sum_probs=65.4

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~  112 (157)
                      +-..+...|..+..+   .+..+.++.+.+  ..+|.|++-...|+.+       .++-++++++..++.+|. +.+.-+
T Consensus        39 l~~~L~~~g~~v~~~---~~~~~al~~~~~--~~~dlvllD~~lp~~~-------g~~~~~~lr~~~~~~~ii~lt~~~~  106 (250)
T 3r0j_A           39 LSVSLKFQGFEVYTA---TNGAQALDRARE--TRPDAVILDVXMPGMD-------GFGVLRRLRADGIDAPALFLTARDS  106 (250)
T ss_dssp             HHHHHHHTTCEEEEE---SSHHHHHHHHHH--HCCSEEEEESCCSSSC-------HHHHHHHHHHTTCCCCEEEEECSTT
T ss_pred             HHHHHHHCCCEEEEE---CCHHHHHHHHHh--CCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCEEEEECCCC
Confidence            344456667765422   233333433332  3689888765557644       356677778777776655 455555


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .+......++|||.++     .+.-++.+....++..++.
T Consensus       107 ~~~~~~~~~~Ga~~yl-----~Kp~~~~~L~~~i~~~~~~  141 (250)
T 3r0j_A          107 LQDKIAGLTLGGDDYV-----TKPFSLEEVVARLRVILRR  141 (250)
T ss_dssp             HHHHHHHHTSTTCEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcEEE-----eCCCCHHHHHHHHHHHHHh
Confidence            7888889999999874     4555778777778777664

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=93.47  E-value=0.88  Score=33.72  Aligned_cols=111  Identities=6%  Similarity=-0.029  Sum_probs=67.5

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHc--CCceEEEecCCCCH-HhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSK--GMRPGVALKPGTSV-EEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl~l~~~t~~-~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      ++++.+ +.|+|++-++.+..- .- .+.++.+|+.  +..+.+.++..+.. ..++.+.+  .++|++.+.    +..+
T Consensus        23 ~~~~~~-~~~vd~ie~g~~~~~~~G-~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~--aGad~i~vh----~~~~   94 (218)
T 3jr2_A           23 AVASNV-ASYVDVIEVGTILAFAEG-MKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFE--AGADWITVS----AAAH   94 (218)
T ss_dssp             HHHHHH-GGGCSEEEECHHHHHHHT-THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHH--HTCSEEEEE----TTSC
T ss_pred             HHHHHh-cCCceEEEeCcHHHHhcC-HHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHh--cCCCEEEEe----cCCC
Confidence            344443 568999999954211 12 4789999987  66677766554433 33455554  489999774    3332


Q ss_pred             cccchhHHHH-HHHHHhhCCCCcEEE--EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           83 QKFMPEMMDK-VRSLRNRYPSLDIEV--DGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        83 q~~~~~~~~k-i~~l~~~~~~~~I~v--dGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                          ++.+++ ++.+++.  +....+  -|=-|.+.+..+.+.|+|.+++..
T Consensus        95 ----~~~~~~~~~~~~~~--g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~~~  140 (218)
T 3jr2_A           95 ----IATIAACKKVADEL--NGEIQIEIYGNWTMQDAKAWVDLGITQAIYHR  140 (218)
T ss_dssp             ----HHHHHHHHHHHHHH--TCEEEEECCSSCCHHHHHHHHHTTCCEEEEEC
T ss_pred             ----HHHHHHHHHHHHHh--CCccceeeeecCCHHHHHHHHHcCccceeeee
Confidence                233333 4444544  454443  244578888888889999887643

>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}

Probab=93.45  E-value=0.58  Score=37.73  Aligned_cols=109  Identities=13%  Similarity=0.169  Sum_probs=71.8

Q ss_pred             HHHHHhCCCCEEEEcccC----CcchHHHHHHHHHHc-CC--ceEEEecCCCC-HHhHHhhHhcCC--CCCeEEEEeeeC
Q 031554            9 VEPLGKAGASGFTFHVEI----SKDNWQELVQRIKSK-GM--RPGVALKPGTS-VEEVYPLVEGAN--PVEMVLVMTVEP   78 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~----~~~~~~~~i~~ir~~-g~--~~gl~l~~~t~-~~~~~~~~~~~~--~~d~vl~m~v~p   78 (157)
                      ++.+.+.|.+.+=++.-.    .+.. .+.++++|+. |-  .+.+..|-... .+....+++.+.  .++++       
T Consensus       154 a~~~~~~Gf~~iKlk~g~~g~~~~~d-~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~i-------  225 (374)
T 3sjn_A          154 VQGLKDQGFSSIKFGGGVMGDDPDTD-YAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWI-------  225 (374)
T ss_dssp             HHHHHTTTCSEEEEECTTTTSCHHHH-HHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEE-------
T ss_pred             HHHHHHcCCCEEEeccCCCCCCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEE-------
Confidence            455677899999999752    2334 6778888886 54  45556666667 665544443112  34444       


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEE
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVA  129 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~  129 (157)
                         .|++.+..++-.+++++. .+++|+.|+.+. .+.+.++++. .+|++.+
T Consensus       226 ---EqP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~  274 (374)
T 3sjn_A          226 ---EEPVLADSLISYEKLSRQ-VSQKIAGGESLTTRYEFQEFITKSNADIVQP  274 (374)
T ss_dssp             ---ECSSCTTCHHHHHHHHHH-CSSEEEECTTCCHHHHHHHHHHHHCCSEECC
T ss_pred             ---ECCCCcccHHHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence               244555556677777776 479999999998 5788887765 5787744

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=93.42  E-value=0.2  Score=42.18  Aligned_cols=78  Identities=21%  Similarity=0.263  Sum_probs=54.5

Q ss_pred             EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCCHhhHHHHHHcCC
Q 031554           46 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLGPSTIAEAASAGA  124 (157)
Q Consensus        46 gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI~~~~i~~~~~~Ga  124 (157)
                      +..+++....+.++.+.+  .+++.+.+.. ..|     .....++.++.+++..++ .++.+.+..+.+.+..+.++||
T Consensus       235 ~a~v~~~~~~e~~~~l~e--~gv~~l~Vd~-~~g-----~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGa  306 (503)
T 1me8_A          235 GAGINTRDFRERVPALVE--AGADVLCIDS-SDG-----FSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGA  306 (503)
T ss_dssp             EEEECSSSHHHHHHHHHH--HTCSEEEECC-SCC-----CSHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTC
T ss_pred             ccccCchhHHHHHHHHHh--hhccceEEec-ccC-----cccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCC
Confidence            344555444555666654  3678765432 222     234467778888887767 8888888889999999999999


Q ss_pred             CEEEEcc
Q 031554          125 NCIVAGS  131 (157)
Q Consensus       125 d~vV~GS  131 (157)
                      |++++|.
T Consensus       307 d~I~Vg~  313 (503)
T 1me8_A          307 DFIKIGI  313 (503)
T ss_dssp             SEEEECS
T ss_pred             CeEEecc
Confidence            9999874

>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A

Probab=93.41  E-value=1.4  Score=32.94  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=63.1

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~  112 (157)
                      +-+.+++.|..+..+   .+..+.+..+.+  ..+|.|++-...|+.+|       ++-++++|+..++++|. +.+.-+
T Consensus       145 l~~~L~~~g~~v~~a---~~~~eal~~l~~--~~~dlvl~D~~mp~~~G-------~~l~~~ir~~~~~~piI~lt~~~~  212 (254)
T 2ayx_A          145 LADQLGSLGYQCKTA---NDGVDALNVLSK--NHIDIVLSDVNMPNMDG-------YRLTQRIRQLGLTLPVIGVTANAL  212 (254)
T ss_dssp             HHHHHHHHTSEEEEE---CCSHHHHHHHHH--SCCSEEEEEESSCSSCC-------HHHHHHHHHHHCCSCEEEEESSTT
T ss_pred             HHHHHHHcCCEEEEE---CCHHHHHHHHHh--CCCCEEEEcCCCCCCCH-------HHHHHHHHhcCCCCcEEEEECCCC
Confidence            444456678875433   344554544432  46888877655676554       34455555555566644 566666


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .+....+.++|++.++     .+.-++.+....+++.++.
T Consensus       213 ~~~~~~~~~~G~~~~l-----~KP~~~~~L~~~l~~~~~~  247 (254)
T 2ayx_A          213 AEEKQRCLESGMDSCL-----SKPVTLDVIKQTLTLYAER  247 (254)
T ss_dssp             SHHHHHHHHCCCEEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCceEE-----ECCCCHHHHHHHHHHHHHH
Confidence            7888899999999874     4444666666666665554

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=93.39  E-value=1.5  Score=40.73  Aligned_cols=115  Identities=17%  Similarity=0.204  Sum_probs=81.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCC-----------CCH----HhHHhhHhcCCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPG-----------TSV----EEVYPLVEGANPVE   69 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~-----------t~~----~~~~~~~~~~~~~d   69 (157)
                      ..+++.+.++|+|.+.+-.-..+ +.+...++.+++.|..+..++++.           ++.    +.++.+.+  .++|
T Consensus       630 ~~~v~~a~~~Gvd~irif~~~sd~~~~~~~~~~~~e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~~~~--~Ga~  707 (1150)
T 3hbl_A          630 HKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELER--EGFH  707 (1150)
T ss_dssp             HHHHHHHHHTTCCEEEEECTTCCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHHHH--TTCS
T ss_pred             HHHHHHHHhCCcCEEEEEeeCCHHHHHHHHHHHHHHHhhheeEEEeecccccChhhcCCCCHHHHHHHHHHHHH--cCCC
Confidence            45788999999999877643333 222778889999998877766554           122    33444444  4788


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI  127 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v  127 (157)
                      .|.+    +.+.|-.......+.++.+++.. +++|.+    |-|....|.-..+++|||.|
T Consensus       708 ~i~l----~Dt~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnt~G~a~An~laA~~aGa~~v  764 (1150)
T 3hbl_A          708 ILAI----KDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDII  764 (1150)
T ss_dssp             EEEE----EETTCCCCHHHHHHHHHHHHHHC-CSCEEEEECBTTSCHHHHHHHHHHTTCSEE
T ss_pred             eeeE----cCccCCCCHHHHHHHHHHHHHhc-CCeEEEEeCCCCcHHHHHHHHHHHhCCCEE
Confidence            8766    45556655666777888888874 666664    67888888888899999986

>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*

Probab=93.38  E-value=0.67  Score=37.61  Aligned_cols=113  Identities=15%  Similarity=0.108  Sum_probs=69.9

Q ss_pred             HHHHH---HHHhCCCCEEEEcccC----------CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCC
Q 031554            6 LDYVE---PLGKAGASGFTFHVEI----------SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVE   69 (157)
Q Consensus         6 ~~~i~---~~~~~gad~v~vh~e~----------~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d   69 (157)
                      +.+.+   .+.+.|.+.+-+|.-.          .... .+.++++|+. |  +.+.+..|-....+...++++.+...+
T Consensus       150 e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~-~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~  228 (392)
T 3p3b_A          150 ALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRD-IAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVN  228 (392)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHHH-HHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHhCCCEEEECcCcCcccCCccccHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcC
Confidence            55544   3467899999998642          1223 5677788873 4  556677777777776655554213433


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                      ...   ++     |++. ..++-.+++++.    ..+++|+.|+ ++ .+.+.++++.| +|++.+
T Consensus       229 i~~---iE-----~P~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~i  284 (392)
T 3p3b_A          229 LYW---LE-----EAFH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQY  284 (392)
T ss_dssp             EEE---EE-----CSSS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECC
T ss_pred             CCE---Ee-----cCCc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEe
Confidence            332   22     2232 334444555554    2479999999 87 68999988887 787744

>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C

Probab=93.37  E-value=0.9  Score=29.53  Aligned_cols=101  Identities=14%  Similarity=0.206  Sum_probs=61.9

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcE-EEEcC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDI-EVDGG  110 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I-~vdGG  110 (157)
                      .-..+++.|..+..+   .+..+.++.+. . ..+|.|++-...|+..|       ++-++++++.  .++.+| .+.+.
T Consensus        18 l~~~l~~~g~~v~~~---~~~~~al~~l~-~-~~~dlvllD~~~p~~~g-------~~~~~~l~~~~~~~~~pii~~s~~   85 (122)
T 3gl9_A           18 VSFNLKKEGYEVIEA---ENGQIALEKLS-E-FTPDLIVLXIMMPVMDG-------FTVLKKLQEKEEWKRIPVIVLTAK   85 (122)
T ss_dssp             HHHHHHHTTCEEEEE---SSHHHHHHHHT-T-BCCSEEEECSCCSSSCH-------HHHHHHHHTSTTTTTSCEEEEESC
T ss_pred             HHHHHHHCCcEEEEe---CCHHHHHHHHH-h-cCCCEEEEeccCCCCcH-------HHHHHHHHhcccccCCCEEEEecC
Confidence            334456667765422   33334444333 2 46888877555576544       4556666654  345664 45666


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      -+.+......++||+.+     +.+.-++.+....+++.++
T Consensus        86 ~~~~~~~~~~~~Ga~~~-----l~KP~~~~~L~~~i~~~l~  121 (122)
T 3gl9_A           86 GGEEDESLALSLGARKV-----MRKPFSPSQFIEEVKHLLN  121 (122)
T ss_dssp             CSHHHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHhcChhhh-----ccCCCCHHHHHHHHHHHhc
Confidence            66788888999999987     4455577777777776553

>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1

Probab=93.34  E-value=0.22  Score=40.94  Aligned_cols=66  Identities=24%  Similarity=0.325  Sum_probs=45.2

Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHH-Hhh-CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-RNR-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l-~~~-~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      .+|.|.+-+..|- .|  ...+..+++++. .+. ++++.|++-|||+++++..+.++ +|.|.+|+.+.+.
T Consensus       234 ~~d~IrlDs~~~~-~g--d~~~~v~~~r~~ld~~G~~~~~I~aSggl~~~~i~~l~~~-vD~~gvGt~l~~~  301 (395)
T 2i14_A          234 KLFAVRLDTPSSR-RG--NFRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDV-VDAFGVGGAIASA  301 (395)
T ss_dssp             GCCEEEECCCTTT-CS--CHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGGG-CSEEEECHHHHTC
T ss_pred             CCcEEEeCCCCCC-cc--cHHHHHHHHHHHHHhCCCCceEEEEECCCCHHHHHHHHHh-CCEEEeCcccCCC
Confidence            5788877544330 01  123344444433 222 35789999999999999999999 9999999987654

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=93.33  E-value=0.26  Score=37.15  Aligned_cols=44  Identities=23%  Similarity=0.209  Sum_probs=35.2

Q ss_pred             HHHHHHHHHhhCCCCcEEEEcCCCH-------hhHHHHHHcCCCEEEEcccc
Q 031554           89 MMDKVRSLRNRYPSLDIEVDGGLGP-------STIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        89 ~~~ki~~l~~~~~~~~I~vdGGI~~-------~~i~~~~~~Gad~vV~GSai  133 (157)
                      .++-++++|+.. +.+|.+-+++++       +.++.+.++|||.++++..-
T Consensus        68 ~~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~  118 (248)
T 1geq_A           68 AFWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLP  118 (248)
T ss_dssp             HHHHHHHHHTTC-CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCC
T ss_pred             HHHHHHHHHhhC-CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCC
Confidence            466788888774 678888777785       78889999999999999643

>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}

Probab=93.32  E-value=0.48  Score=38.66  Aligned_cols=104  Identities=19%  Similarity=0.273  Sum_probs=71.2

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-------chHHHHHHHHHHcCCceEEEecCCC------CHHhHHhhHhcCCCCCeEE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-------DNWQELVQRIKSKGMRPGVALKPGT------SVEEVYPLVEGANPVEMVL   72 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-------~~~~~~i~~ir~~g~~~gl~l~~~t------~~~~~~~~~~~~~~~d~vl   72 (157)
                      ..|++.+.+.|...|..-.-.++       .-+.++++.++++|+++.+.++|.+      +.+.+..+.++  +++.+ 
T Consensus        20 ~~yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~Lg~s~~dl~~~~~l--Gi~gl-   96 (372)
T 2p0o_A           20 IIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGEALKRAGFSFDELEPLIEL--GVTGL-   96 (372)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCC-----CHHHHHHHHHHHHHHHTCEEEEEECHHHHHTTTCBTTBCHHHHHH--TCCEE-
T ss_pred             HHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHc--CCCEE-
Confidence            37999999999998755422221       1226788889999999999999854      23344455443  66666 


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCC
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGAN  125 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad  125 (157)
                        -++-||+++        .+.++.   .++.|+.=-.. +.+.+..+.+.|+|
T Consensus        97 --RLD~Gf~~~--------eia~ls---~nlkIeLNASti~~~~l~~l~~~~~n  137 (372)
T 2p0o_A           97 --RMDYGITIE--------QMAHAS---HKIDIGLNASTITLEEVAELKAHQAD  137 (372)
T ss_dssp             --EECSSCCHH--------HHHHHH---TTSEEEEETTTCCHHHHHHHHHTTCC
T ss_pred             --EEcCCCCHH--------HHHHHh---cCCEEEEECccCCHHHHHHHHHcCCC
Confidence              446777652        223332   23778888877 88999999999998

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}

Probab=93.27  E-value=0.92  Score=36.82  Aligned_cols=113  Identities=9%  Similarity=0.089  Sum_probs=72.9

Q ss_pred             ChHHHHHH---HHhCCCCEEEEccc-----CC---------------cchHHHHHHHHHHc-C--CceEEEecCCCCHHh
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVE-----IS---------------KDNWQELVQRIKSK-G--MRPGVALKPGTSVEE   57 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e-----~~---------------~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~   57 (157)
                      +|+.+.+.   +.+.|.+.+-+|.-     ..               ... .+.++.+|+. |  +.+.+..|-....+.
T Consensus       152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~-~e~v~avR~a~G~d~~l~vDan~~~~~~~  230 (407)
T 2o56_A          152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLG-YDRMAAIRDAVGPDVDIIAEMHAFTDTTS  230 (407)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHH-HHHHHHHHHHHCTTSEEEEECTTCSCHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHH
Confidence            67777654   45789999999852     11               123 5778888883 4  555666666666655


Q ss_pred             HHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554           58 VYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV  128 (157)
Q Consensus        58 ~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV  128 (157)
                      ..++++.+.  .++++          .|++.+..++-.+++++.. +++|+.|+.+. .+.++++++.| +|++.
T Consensus       231 a~~~~~~l~~~~i~~i----------E~P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~  294 (407)
T 2o56_A          231 AIQFGRMIEELGIFYY----------EEPVMPLNPAQMKQVADKV-NIPLAAGERIYWRWGYRPFLENGSLSVIQ  294 (407)
T ss_dssp             HHHHHHHHGGGCCSCE----------ECSSCSSSHHHHHHHHHHC-CSCEEECTTCCHHHHHHHHHHTTCCSEEC
T ss_pred             HHHHHHHHHhcCCCEE----------eCCCChhhHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHHcCCCCEEe
Confidence            444443102  34444          2344455566777777764 79999999997 68888888776 67763

>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.23  E-value=1.2  Score=29.59  Aligned_cols=100  Identities=8%  Similarity=0.054  Sum_probs=59.1

Q ss_pred             HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCCHh
Q 031554           36 QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPS  114 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~~~  114 (157)
                      +.+...|..+. ..  .+..+.+..+.+  ..+|.|++-...|+..|       ++-++++++..+..+|.+ .+.-+.+
T Consensus        22 ~~L~~~g~~v~-~~--~~~~~a~~~l~~--~~~dlvllD~~l~~~~g-------~~l~~~l~~~~~~~~ii~ls~~~~~~   89 (137)
T 3cfy_A           22 QYVKDEPYDIF-HV--ETGRDAIQFIER--SKPQLIILDLKLPDMSG-------EDVLDWINQNDIPTSVIIATAHGSVD   89 (137)
T ss_dssp             HHTTTSSSEEE-EE--SSHHHHHHHHHH--HCCSEEEECSBCSSSBH-------HHHHHHHHHTTCCCEEEEEESSCCHH
T ss_pred             HHHHhcCceEE-Ee--CCHHHHHHHHHh--cCCCEEEEecCCCCCCH-------HHHHHHHHhcCCCCCEEEEEecCcHH
Confidence            33444566543 22  333333433332  36788877555565443       455667777666766554 4445578


Q ss_pred             hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       115 ~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      ......++||+.++     .+.-++.+....+++.++.
T Consensus        90 ~~~~~~~~ga~~~l-----~KP~~~~~L~~~i~~~~~~  122 (137)
T 3cfy_A           90 LAVNLIQKGAEDFL-----EKPINADRLKTSVALHLKR  122 (137)
T ss_dssp             HHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCccEEE-----eCCCCHHHHHHHHHHHHHH
Confidence            88889999999874     3444666666666665543

>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*

Probab=93.18  E-value=2.1  Score=33.30  Aligned_cols=119  Identities=11%  Similarity=0.110  Sum_probs=70.0

Q ss_pred             HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHHh--HHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVEE--VYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~--~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      ++.+.+. +|++-+......++  ++++++.+.|+-+++.-... |+-+.  +.+++......+.+++...- .|   .+
T Consensus        99 ~~~l~~~-~d~~kIga~~~~n~--~ll~~~a~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~-~~---~~  171 (280)
T 2qkf_A           99 CQPVAEV-CDVIQLPAFLARQT--DLVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGS-SF---GY  171 (280)
T ss_dssp             HHHHHHH-CSEEEECGGGTTBH--HHHHHHHHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCE-EC---ST
T ss_pred             HHHHHhh-CCEEEECcccccCH--HHHHHHHcCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCC-CC---CC
Confidence            3445556 88998887544454  68888888898888876554 43322  22232222445666665321 12   12


Q ss_pred             ch--hHHHHHHHHHhhCCCCcEEEE---------------cCCC---HhhHHHHHHcCCCEEEEccccc
Q 031554           86 MP--EMMDKVRSLRNRYPSLDIEVD---------------GGLG---PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        86 ~~--~~~~ki~~l~~~~~~~~I~vd---------------GGI~---~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      ..  ..+.-+..+++.+++++|.+|               +|-+   ..-....+..|||++++=+-+.
T Consensus       172 ~~~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~~  240 (280)
T 2qkf_A          172 DNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHPD  240 (280)
T ss_dssp             TCEECCTTHHHHHHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC---
T ss_pred             CccccCHHHHHHHHHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeecCC
Confidence            11  234456677887667899998               5522   2334455789999999988764

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=93.14  E-value=0.64  Score=39.05  Aligned_cols=68  Identities=15%  Similarity=0.265  Sum_probs=49.1

Q ss_pred             HHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           55 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        55 ~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      .+.++.+++  .++|.|.+-+.+    |.  ....++.++++++..++++|.+.+-.+.+.+..+.++|||.+++|
T Consensus       257 ~~~a~~~~~--aG~d~v~i~~~~----G~--~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg  324 (514)
T 1jcn_A          257 KYRLDLLTQ--AGVDVIVLDSSQ----GN--SVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVG  324 (514)
T ss_dssp             HHHHHHHHH--TTCSEEEECCSC----CC--SHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHH--cCCCEEEeeccC----Cc--chhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEEC
Confidence            455566665  589988764322    21  234567788888887788887644567899999999999999995

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*

Probab=93.14  E-value=2  Score=34.82  Aligned_cols=117  Identities=9%  Similarity=0.128  Sum_probs=76.7

Q ss_pred             cChHHHHH---HHHhCCCCEEEEcccC-CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHh-c-CCCCCeEEE
Q 031554            3 TNPLDYVE---PLGKAGASGFTFHVEI-SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVE-G-ANPVEMVLV   73 (157)
Q Consensus         3 ~~p~~~i~---~~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl~   73 (157)
                      .+|+.+.+   .+.+.|.+.+=++.-. .+.. .+.++++|+. |  ..+.+..|-..+.+...++++ + -..+++|  
T Consensus       150 ~~~e~~~~~a~~~~~~G~~~iKiKvG~~~~~d-~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i--  226 (389)
T 3ozy_A          150 LTPDQAADELAGWVEQGFTAAKLKVGRAPRKD-AANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWF--  226 (389)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEECCSCHHHH-HHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEE--
T ss_pred             CCHHHHHHHHHHHHHCCCCEEeeccCCCHHHH-HHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEE--
Confidence            45666654   4456899999998653 2233 5677888875 4  455666777777765544432 1 0245555  


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHH-hhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLR-NRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS  131 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~-~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS  131 (157)
                              .|++.+..++-+++++ +. .+++|+.|+.+. .+.+.++++.| +|++.+--
T Consensus       227 --------EqP~~~~d~~~~~~l~~~~-~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~  278 (389)
T 3ozy_A          227 --------EEPLSIDDIEGHRILRAQG-TPVRIATGENLYTRNAFNDYIRNDAIDVLQADA  278 (389)
T ss_dssp             --------ESCSCTTCHHHHHHHHTTC-CSSEEEECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred             --------ECCCCcccHHHHHHHHhcC-CCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCc
Confidence                    2445555667777887 54 479999999998 58888887765 78875543

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=93.11  E-value=0.4  Score=38.90  Aligned_cols=119  Identities=18%  Similarity=0.185  Sum_probs=69.9

Q ss_pred             HHHHHHhCCCCEEEEcc----cCCcchHHHHHHHHHHcCCc-eEE-Eec-----CCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554            8 YVEPLGKAGASGFTFHV----EISKDNWQELVQRIKSKGMR-PGV-ALK-----PGTSVEEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~----e~~~~~~~~~i~~ir~~g~~-~gl-~l~-----~~t~~~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      +.+.+.++|+-+.+=-.    +. +.. .+..+.+|+..-. +-+ .++     +..+.+.+.+..++ -..|.+.+. +
T Consensus        81 la~~a~~~G~~~~vGs~~~~l~~-~~~-~~s~~~vr~~ap~~~~~anlg~~ql~~~~~~~~~~~av~~-~~a~al~Ih-l  156 (368)
T 3vkj_A           81 IAEVAEKFGIPMGVGSQRVAIEK-AEA-RESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQM-IEADAIAVH-L  156 (368)
T ss_dssp             HHHHHHHHTCCEECCCCHHHHHC-GGG-SHHHHHHHHHCSSSCEEEEEEGGGGGTTCCHHHHHHHHHH-TTCSEEEEE-C
T ss_pred             HHHHHHHhCCCeeeecchhccCC-HHH-HhhHHHHHHhCcCcceecCcCeeecCCCCCHHHHHHHHHH-hcCCCeEEE-e
Confidence            56777888886663211    11 111 2223334543211 111 132     32667766665554 256777653 4


Q ss_pred             eCCC-----CC-cccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           77 EPGF-----GG-QKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        77 ~pG~-----~g-q~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +|..     .| ..|....++.|+++++.. +++|.+   .+|++++.+..+.++|||.++++.
T Consensus       157 n~~~~~~~p~g~~~~~~~~~~~i~~i~~~~-~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g  219 (368)
T 3vkj_A          157 NPAQEVFQPEGEPEYQIYALEKLRDISKEL-SVPIIVKESGNGISMETAKLLYSYGIKNFDTSG  219 (368)
T ss_dssp             CHHHHHHSSSCCCBCBTHHHHHHHHHHTTC-SSCEEEECSSSCCCHHHHHHHHHTTCCEEECCC
T ss_pred             cchhhhhCCCCCchhhHHHHHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeC
Confidence            4421     12 222224788899988874 688888   667999999999999999999853

>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0

Probab=93.09  E-value=1.2  Score=29.24  Aligned_cols=105  Identities=16%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcE-EEEc
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDI-EVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I-~vdG  109 (157)
                      ..+-+.+++.|..+-.+   .+..+.+..+.+. ..+|.|++-...|+..       .++-++++++. .++.+| .+.+
T Consensus        21 ~~l~~~L~~~g~~v~~~---~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~~ii~~s~   89 (136)
T 3hdv_A           21 EALILYLKSRGIDAVGA---DGAEEARLYLHYQ-KRIGLMITDLRMQPES-------GLDLIRTIRASERAALSIIVVSG   89 (136)
T ss_dssp             HHHHHHHHHTTCCEEEE---SSHHHHHHHHHHC-TTEEEEEECSCCSSSC-------HHHHHHHHHTSTTTTCEEEEEES
T ss_pred             HHHHHHHHHcCceEEEe---CCHHHHHHHHHhC-CCCcEEEEeccCCCCC-------HHHHHHHHHhcCCCCCCEEEEeC
Confidence            34445566677765332   3344444444321 2378777644445533       45667777776 566664 4566


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .-+.+...++.++|++.++     .+.-++.+....+++....
T Consensus        90 ~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~~~~  127 (136)
T 3hdv_A           90 DTDVEEAVDVMHLGVVDFL-----LKPVDLGKLLELVNKELKI  127 (136)
T ss_dssp             SCCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHC-
T ss_pred             CCChHHHHHHHhCCcceEE-----eCCCCHHHHHHHHHHHhcC
Confidence            6668888899999999884     4445777777777766554

>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}

Probab=92.92  E-value=0.35  Score=40.59  Aligned_cols=48  Identities=21%  Similarity=0.380  Sum_probs=39.3

Q ss_pred             ChHHHHHHHHhCCCCEEEEccc-------------------C-----CcchHHHHHHHHHHcCCceEEEecC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVE-------------------I-----SKDNWQELVQRIKSKGMRPGVALKP   51 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e-------------------~-----~~~~~~~~i~~ir~~g~~~gl~l~~   51 (157)
                      ||..+++.+.++||.++.+-..                   .     ..+.+.++.+++|++|+++|+-+++
T Consensus        55 d~~~w~~~~k~aGaky~v~takHHdGf~lw~S~~t~~~~~~~p~~~~k~Div~e~~~A~r~~Gl~~g~Y~s~  126 (469)
T 3eyp_A           55 DCRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKAGIYLGP  126 (469)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEEEEEECS
T ss_pred             CHHHHHHHHHHcCCCEEEEEEEeCCCccccCCCCCCcccccCcccCCCCCHHHHHHHHHHHcCCeEEEEeCh
Confidence            7999999999999999987421                   0     0145578999999999999999875

>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}

Probab=92.81  E-value=1.7  Score=34.28  Aligned_cols=125  Identities=20%  Similarity=0.141  Sum_probs=74.7

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc-------------hHHHHHHHHHHcCCceEE--EecCCCCHHhHHhhHh-c-CCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD-------------NWQELVQRIKSKGMRPGV--ALKPGTSVEEVYPLVE-G-ANPV   68 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~-------------~~~~~i~~ir~~g~~~gl--~l~~~t~~~~~~~~~~-~-~~~~   68 (157)
                      .+.++.+.++|+|.+.+..|+.++             .+.+.++.+++.|+++..  .+......+.+.+.++ + .-++
T Consensus       152 ~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e~~~~~l~~l~~l~~  231 (350)
T 3t7v_A          152 NATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTNDP  231 (350)
T ss_dssp             HHHHHHHHHTTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESSSCCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeecCCCHHHHHHHHHHHHhCCC
Confidence            457889999999999988888631             125567778889988755  3444444433332222 1 0257


Q ss_pred             CeEEEEeeeC--CCCCcc----cchhHHHHHHHHHhhCCCCcEEEE---cCCCHhhHHHHHHcCCCEEEEccccc
Q 031554           69 EMVLVMTVEP--GFGGQK----FMPEMMDKVRSLRNRYPSLDIEVD---GGLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        69 d~vl~m~v~p--G~~gq~----~~~~~~~ki~~l~~~~~~~~I~vd---GGI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      +.+-+....|  |+.-..    -..+.++.+.-+|-..|+..|-+.   .|+  +.......+|||.+  |+.+.
T Consensus       232 ~~v~~~~f~p~~gT~l~~~~~~~~~e~l~~ia~~Rl~lp~~~I~a~~~~~g~--~~~~~~l~~Gan~~--~~~~~  302 (350)
T 3t7v_A          232 DMVRVMTFLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPASLDLEGI--DGMVLRLNAGANIV--TSILP  302 (350)
T ss_dssp             SEEEEEECCCCTTSTTTTCCCCCCCCHHHHHHHHHHHSTTSBCEEEHHHHHH--HHHHHHHHTTCCEE--EEECC
T ss_pred             CEEEecceeeCCCCcCccCCCCChHHHHHHHHHHHHhCCCcCccccccccCh--hHHHHHHhcCCcee--cCCCC
Confidence            7787776655  432111    123456667777777777655442   222  34556789999943  44444

>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}

Probab=92.74  E-value=0.79  Score=30.22  Aligned_cols=102  Identities=10%  Similarity=0.045  Sum_probs=61.0

Q ss_pred             HHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcC
Q 031554           33 ELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGG  110 (157)
Q Consensus        33 ~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGG  110 (157)
                      .+-+.+++.| ..+-.+   .+..+.+..+. . ..+|.|++-...|+..|       ++-++++++..++.+|. +.+-
T Consensus        29 ~l~~~L~~~g~~~v~~~---~~~~~a~~~l~-~-~~~dlvi~D~~l~~~~g-------~~~~~~l~~~~~~~~ii~~s~~   96 (135)
T 3snk_A           29 DVATRLDALAIYDVRVS---ETDDFLKGPPA-D-TRPGIVILDLGGGDLLG-------KPGIVEARALWATVPLIAVSDE   96 (135)
T ss_dssp             HHHHHHHHTSSEEEEEE---CGGGGGGCCCT-T-CCCSEEEEEEETTGGGG-------STTHHHHHGGGTTCCEEEEESC
T ss_pred             HHHHHHhhcCCeEEEEe---ccHHHHHHHHh-c-cCCCEEEEeCCCCCchH-------HHHHHHHHhhCCCCcEEEEeCC
Confidence            3444566666 544322   23333333332 2 46888887655676444       33456667766666654 5565


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      -+.+......++||+.++     .+.-++.+....+++.++
T Consensus        97 ~~~~~~~~~~~~g~~~~l-----~KP~~~~~L~~~i~~~~~  132 (135)
T 3snk_A           97 LTSEQTRVLVRMNASDWL-----HKPLDGKELLNAVTFHDT  132 (135)
T ss_dssp             CCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHcCcHhhc-----cCCCCHHHHHHHHHHHhc
Confidence            667888899999999874     454577777676666544

>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}

Probab=92.74  E-value=1.4  Score=29.24  Aligned_cols=104  Identities=13%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEE-EE
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIE-VD  108 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I~-vd  108 (157)
                      ..+.+.+.+.|..+-. .  .+..+.+..+.+  ..+|.|++-...|+..       .++-++++++  ..++++|. +.
T Consensus        22 ~~l~~~L~~~g~~v~~-~--~~~~~a~~~l~~--~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~pii~ls   89 (147)
T 2zay_A           22 AASISALSQEGFDIIQ-C--GNAIEAVPVAVK--THPHLIITEANMPKIS-------GMDLFNSLKKNPQTASIPVIALS   89 (147)
T ss_dssp             HHHHHHHHHHTEEEEE-E--SSHHHHHHHHHH--HCCSEEEEESCCSSSC-------HHHHHHHHHTSTTTTTSCEEEEE
T ss_pred             HHHHHHHHHcCCeEEE-e--CCHHHHHHHHHc--CCCCEEEEcCCCCCCC-------HHHHHHHHHcCcccCCCCEEEEe
Confidence            4455556666764432 2  233333333332  3588888754445432       3566777777  45666654 55


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +.-+.+....+.++|++.++     .+.-++.+....+++.++.
T Consensus        90 ~~~~~~~~~~~~~~g~~~~l-----~kp~~~~~L~~~i~~~~~~  128 (147)
T 2zay_A           90 GRATAKEEAQLLDMGFIDFI-----AKPVNAIRLSARIKRVLKL  128 (147)
T ss_dssp             SSCCHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhCCCCEEE-----eCCCCHHHHHHHHHHHHHH
Confidence            55567888888999999874     4445677777777776654

>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}

Probab=92.73  E-value=0.91  Score=29.62  Aligned_cols=105  Identities=10%  Similarity=0.158  Sum_probs=60.0

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEEEc
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdG  109 (157)
                      ...++.+-+.|..+..+   .+..+.+..+.+  ..+|.|++-...|+..       .++-++++++.  .++.+|.+-.
T Consensus        17 ~~~l~~~l~~~~~v~~~---~~~~~a~~~l~~--~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~~pii~~s   84 (133)
T 3nhm_A           17 RETLRLLLSGEFDCTTA---ADGASGLQQALA--HPPDVLISDVNMDGMD-------GYALCGHFRSEPTLKHIPVIFVS   84 (133)
T ss_dssp             HHHHHHHHTTTSEEEEE---SSHHHHHHHHHH--SCCSEEEECSSCSSSC-------HHHHHHHHHHSTTTTTCCEEEEE
T ss_pred             HHHHHHHHhCCcEEEEE---CCHHHHHHHHhc--CCCCEEEEeCCCCCCC-------HHHHHHHHHhCCccCCCCEEEEe
Confidence            44455544466654432   233333333332  4688887754445533       35566777765  3467766555


Q ss_pred             CCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554          110 GLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +-. .+. ....++|++.+     +.+.-++.+....+++.++..+
T Consensus        85 ~~~~~~~-~~~~~~g~~~~-----l~KP~~~~~l~~~i~~~l~~~~  124 (133)
T 3nhm_A           85 GYAPRTE-GPADQPVPDAY-----LVKPVKPPVLIAQLHALLARAE  124 (133)
T ss_dssp             SCCC------TTSCCCSEE-----EESSCCHHHHHHHHHHHHHHHC
T ss_pred             CCCcHhH-HHHhhcCCceE-----EeccCCHHHHHHHHHHHHhhhc
Confidence            544 444 77788999876     4455688888888888887654

>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*

Probab=92.72  E-value=1.4  Score=35.38  Aligned_cols=114  Identities=15%  Similarity=0.205  Sum_probs=74.9

Q ss_pred             ChHHHHHHH---HhC-CCCEEEEcccCC-c-chHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCC--CCCeEE
Q 031554            4 NPLDYVEPL---GKA-GASGFTFHVEIS-K-DNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGAN--PVEMVL   72 (157)
Q Consensus         4 ~p~~~i~~~---~~~-gad~v~vh~e~~-~-~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl   72 (157)
                      +|+..++.+   .+. |...+=+..-.. . .. .+.++++|+.   ++...+..|-....+....+++.+.  .+++| 
T Consensus       139 ~~~~~~~~a~~~~~~~G~~~~K~K~g~~~~~~d-~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-  216 (367)
T 3dg3_A          139 DPVKMVAEAERIRETYGINTFKVKVGRRPVQLD-TAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFA-  216 (367)
T ss_dssp             CHHHHHHHHHHHHHHHCCCEEEEECCCSSTHHH-HHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCE-
T ss_pred             CHHHHHHHHHHHHHhcCccEEEEeeCCChhhhH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEE-
Confidence            566665544   455 999999886432 1 33 5778888874   4556666777777776655543212  23443 


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                               .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus       217 ---------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~  265 (367)
T 3dg3_A          217 ---------EELCPADDVLSRRRLVGQL-DMPFIADESVPTPADVTREVLGGSATAISI  265 (367)
T ss_dssp             ---------ESCSCTTSHHHHHHHHHHC-SSCEEECTTCSSHHHHHHHHHHTSCSEEEE
T ss_pred             ---------ECCCCcccHHHHHHHHHhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence                     2455555566677777763 79999999997 68888877766 788865

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=92.67  E-value=0.62  Score=30.86  Aligned_cols=106  Identities=10%  Similarity=0.009  Sum_probs=63.5

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~  112 (157)
                      +-+.+++.|..+-. .   +..+.+...++. ..+|.|++-...|+.     ....++-++++++..++.+|. +.+.-+
T Consensus        22 l~~~L~~~g~~v~~-~---~~~~~a~~~l~~-~~~dlvi~D~~l~~~-----~~~g~~~~~~l~~~~~~~~ii~~s~~~~   91 (136)
T 3kto_A           22 LSKLLSPLDVTIQC-F---ASAESFMRQQIS-DDAIGMIIEAHLEDK-----KDSGIELLETLVKRGFHLPTIVMASSSD   91 (136)
T ss_dssp             HHHHHTTSSSEEEE-E---SSHHHHTTSCCC-TTEEEEEEETTGGGB-----TTHHHHHHHHHHHTTCCCCEEEEESSCC
T ss_pred             HHHHHHHCCcEEEE-e---CCHHHHHHHHhc-cCCCEEEEeCcCCCC-----CccHHHHHHHHHhCCCCCCEEEEEcCCC
Confidence            33445555665432 2   233333334332 456777664333430     023566778888877776654 556666


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      .+...+..++||+.++     .+.-++.+....+++......
T Consensus        92 ~~~~~~~~~~ga~~~l-----~KP~~~~~l~~~i~~~~~~~~  128 (136)
T 3kto_A           92 IPTAVRAMRASAADFI-----EKPFIEHVLVHDVQQIINGAK  128 (136)
T ss_dssp             HHHHHHHHHTTCSEEE-----ESSBCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcChHHhe-----eCCCCHHHHHHHHHHHHhccC
Confidence            7888889999999874     454577777777877766543

>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*

Probab=92.65  E-value=3.3  Score=33.22  Aligned_cols=115  Identities=10%  Similarity=0.096  Sum_probs=74.9

Q ss_pred             ChHHHHHH---HHhC-CCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554            4 NPLDYVEP---LGKA-GASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~~---~~~~-gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      +|+..++.   +.+. |...+=+..-.  .+.. .+.++++|+. |  ....+..|-....+...++++.+...+...+ 
T Consensus       151 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d-~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-  228 (372)
T 3tj4_A          151 TLEDLLAGSARAVEEDGFTRLKIKVGHDDPNID-IARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWF-  228 (372)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEEEECCCSSHHHH-HHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEE-
T ss_pred             CHHHHHHHHHHHHHccCCCEEEEcCCCCCHHHH-HHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEE-
Confidence            56666654   4567 99999988653  2233 5678888874 4  4556666777777766555542133333222 


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV  128 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV  128 (157)
                             .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.
T Consensus       229 -------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~  276 (372)
T 3tj4_A          229 -------EEPLWYDDVTSHARLARNT-SIPIALGEQLYTVDAFRSFIDAGAVAYVQ  276 (372)
T ss_dssp             -------ESCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred             -------ECCCCchhHHHHHHHHhhc-CCCEEeCCCccCHHHHHHHHHcCCCCEEE
Confidence                   2445555566777777763 68999999998 68888888776 67663

>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}

Probab=92.55  E-value=0.91  Score=29.97  Aligned_cols=106  Identities=12%  Similarity=0.170  Sum_probs=64.0

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEEEEc
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I~vdG  109 (157)
                      ..+-+.+++.|..+..+   .+..+.++.+. . ..+|.|++-...|+..       .++-++++++  ..++++|.+-.
T Consensus        20 ~~l~~~l~~~g~~v~~~---~~~~~a~~~l~-~-~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~s   87 (140)
T 3grc_A           20 RLLNLMLEKGGFDSDMV---HSAAQALEQVA-R-RPYAAMTVDLNLPDQD-------GVSLIRALRRDSRTRDLAIVVVS   87 (140)
T ss_dssp             HHHHHHHHHTTCEEEEE---CSHHHHHHHHH-H-SCCSEEEECSCCSSSC-------HHHHHHHHHTSGGGTTCEEEEEC
T ss_pred             HHHHHHHHHCCCeEEEE---CCHHHHHHHHH-h-CCCCEEEEeCCCCCCC-------HHHHHHHHHhCcccCCCCEEEEe
Confidence            33445566678765332   23333333333 2 4688887754445533       3556677776  45677776655


Q ss_pred             CCC-HhhHH-HHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554          110 GLG-PSTIA-EAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       110 GI~-~~~i~-~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +-. .+... ...++||+.+     +.+.-++.+....+++.++..+
T Consensus        88 ~~~~~~~~~~~~~~~g~~~~-----l~kP~~~~~l~~~i~~~l~~~~  129 (140)
T 3grc_A           88 ANAREGELEFNSQPLAVSTW-----LEKPIDENLLILSLHRAIDNMA  129 (140)
T ss_dssp             TTHHHHHHHHCCTTTCCCEE-----ECSSCCHHHHHHHHHHHHHHHC
T ss_pred             cCCChHHHHHHhhhcCCCEE-----EeCCCCHHHHHHHHHHHHHhcC
Confidence            544 44555 6778899887     4454577888888888877644

>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*

Probab=92.55  E-value=0.41  Score=39.98  Aligned_cols=98  Identities=18%  Similarity=0.146  Sum_probs=59.7

Q ss_pred             ChHHHHHHHHhCCCCEEEEccc----------------C-----CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhH
Q 031554            4 NPLDYVEPLGKAGASGFTFHVE----------------I-----SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLV   62 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e----------------~-----~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~   62 (157)
                      ||..+++.+.++||.++.+-..                +     ..+.+.++.+++|++|+++|+-.+..-+.  ..+-.
T Consensus       106 Dp~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~pkrDlv~El~~A~rk~Glk~GlY~S~~~dW--~~p~~  183 (455)
T 2zxd_A          106 DPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRFGVYYSGGLDW--RFTTE  183 (455)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEEEEEEECSCCG--GGCCS
T ss_pred             CHHHHHHHHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCCCCChHHHHHHHHHHcCCeEEEEecCCccc--cCccc
Confidence            7999999999999999987421                1     12456899999999999999987622222  11100


Q ss_pred             hcCCCCCeEEEEeeeCCCC----CcccchhHHHHHHHHHhhCCCCcEEEEcCCC
Q 031554           63 EGANPVEMVLVMTVEPGFG----GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG  112 (157)
Q Consensus        63 ~~~~~~d~vl~m~v~pG~~----gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~  112 (157)
                         ...|.      ...+.    .+.+....+..+++|-..+..-.|+.||+-.
T Consensus       184 ---~~~~~------~~~y~~~~~~~~y~~~~~~Ql~ELlt~Y~pd~lWfDg~~~  228 (455)
T 2zxd_A          184 ---PIRYP------EDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNDMGWP  228 (455)
T ss_dssp             ---CCCSG------GGGGTCSCCSHHHHHHHHHHHHHHHHHHCCSEEEEESCCC
T ss_pred             ---ccccc------cccccCCCccHHHHHHHHHHHHHHHhhcCCcEEEECCCCC
Confidence               00110      01111    2233445566677776543224688998753

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A

Probab=92.42  E-value=1.9  Score=35.53  Aligned_cols=113  Identities=12%  Similarity=0.085  Sum_probs=72.5

Q ss_pred             cChHHHHHH---HHhCCCCEEEEcccCC--------------cchHHHHHHHHHHc-CC--ceEEEecCCCCHHhHHhhH
Q 031554            3 TNPLDYVEP---LGKAGASGFTFHVEIS--------------KDNWQELVQRIKSK-GM--RPGVALKPGTSVEEVYPLV   62 (157)
Q Consensus         3 ~~p~~~i~~---~~~~gad~v~vh~e~~--------------~~~~~~~i~~ir~~-g~--~~gl~l~~~t~~~~~~~~~   62 (157)
                      .+|+.+.+.   +.+.|.+.+=+..-..              +.. .+.++++|+. |-  .+.+..|-....+....++
T Consensus       145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d-~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~  223 (433)
T 3rcy_A          145 TSADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLS-VEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLG  223 (433)
T ss_dssp             TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHH-HHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHH-HHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHH
Confidence            467666554   4568999999975321              123 5677888875 54  4455556556665544443


Q ss_pred             hcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEE
Q 031554           63 EGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCI  127 (157)
Q Consensus        63 ~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~v  127 (157)
                      +.+.  .++++          .|++.+..++-++++++.. +++|+.|+.++ ...+.++++.| +|++
T Consensus       224 ~~Le~~~i~~i----------EeP~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~g~~D~v  281 (433)
T 3rcy_A          224 QAIEPYSPLWY----------EEPVPPDNVGAMAQVARAV-RIPVATGERLTTKAEFAPVLREGAAAIL  281 (433)
T ss_dssp             HHHGGGCCSEE----------ECCSCTTCHHHHHHHHHHS-SSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred             HHhhhcCCCEE----------ECCCChhhHHHHHHHHhcc-CCCEEecCCCCCHHHHHHHHHcCCCCEE
Confidence            2102  34444          2445555666777777763 79999999998 68888888876 7877

>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}

Probab=92.38  E-value=1.5  Score=28.70  Aligned_cols=102  Identities=13%  Similarity=0.193  Sum_probs=61.2

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd-GGI~  112 (157)
                      +-..+++.|..+. ..  .+..+.+..+.+  ..+|.|++-...|+..|       ++-++++++..++.++.+- +--+
T Consensus        19 l~~~L~~~g~~v~-~~--~~~~~al~~~~~--~~~dlvl~D~~l~~~~g-------~~~~~~l~~~~~~~~ii~~s~~~~   86 (132)
T 3crn_A           19 TKQILEFEGYEVE-IA--ATAGEGLAKIEN--EFFNLALFXIKLPDMEG-------TELLEKAHKLRPGMKKIMVTGYAS   86 (132)
T ss_dssp             HHHHHHHTTCEEE-EE--SSHHHHHHHHHH--SCCSEEEECSBCSSSBH-------HHHHHHHHHHCTTSEEEEEESCCC
T ss_pred             HHHHHHHCCceEE-Ee--CCHHHHHHHHhc--CCCCEEEEecCCCCCch-------HHHHHHHHhhCCCCcEEEEecccc
Confidence            3344555676543 22  233344443332  46888877544565433       4556667766667776554 4455


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .+......++||+.++     .+.-++.+....+++.++.
T Consensus        87 ~~~~~~~~~~ga~~~l-----~KP~~~~~L~~~i~~~~~~  121 (132)
T 3crn_A           87 LENSVFSLNAGADAYI-----MKPVNPRDLLEKIKEKLDE  121 (132)
T ss_dssp             HHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchhhc-----cCCCCHHHHHHHHHHHHhc
Confidence            7788888999999885     4445677776777666543

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=92.36  E-value=0.83  Score=34.69  Aligned_cols=64  Identities=11%  Similarity=0.137  Sum_probs=45.5

Q ss_pred             HHHHHHHhCCCCEEEEcccC--CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            7 DYVEPLGKAGASGFTFHVEI--SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      ..++.++++|+|.+.+....  ..+.+.++++.+|+...-+.+  -|.++    ..+.   +++|.++++++..+
T Consensus        22 ~~~~~~~~~GtD~i~vGGs~gvt~~~~~~~v~~ik~~~~Pvvl--fp~~~----~~v~---~gaD~~l~pslln~   87 (228)
T 3vzx_A           22 EQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVL--EVSAI----EAIV---PGFDLYFIPSVLNS   87 (228)
T ss_dssp             THHHHHHTSSCSEEEECCCSCCCHHHHHHHHHHHTTSSSCEEE--ECSCG----GGCC---SCCSEEEEEEETTB
T ss_pred             HHHHHHHHcCCCEEEECCcCCCCHHHHHHHHHHhhccCCCEEE--eCCCH----HHcc---ccCCEEEEeeecCC
Confidence            46788899999999999754  223348888899885544444  44453    2244   78999999998766

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}

Probab=92.31  E-value=2.7  Score=33.92  Aligned_cols=117  Identities=13%  Similarity=0.187  Sum_probs=76.0

Q ss_pred             ChHHHHHHH---HhC-CCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHh-c-CCCCCeEE
Q 031554            4 NPLDYVEPL---GKA-GASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVE-G-ANPVEMVL   72 (157)
Q Consensus         4 ~p~~~i~~~---~~~-gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl   72 (157)
                      +|+..++.+   .+. |...+=+..-.  .+.. .+.++++|+. |  +...+..|-....+....+++ + -..+++| 
T Consensus       148 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d-~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i-  225 (383)
T 3i4k_A          148 PLDVAVAEIEERIEEFGNRSFKLKMGAGDPAED-TRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELF-  225 (383)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCSSCHHHH-HHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEE-
T ss_pred             CHHHHHHHHHHHHHhcCCcEEEEeeCCCCHHHH-HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE-
Confidence            566665544   344 99999988643  2333 5778888886 5  456666777777765544432 1 0245555 


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccc
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSS  132 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSa  132 (157)
                               .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+--.
T Consensus       226 ---------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~  277 (383)
T 3i4k_A          226 ---------EQPTPADDLETLREITRRT-NVSVMADESVWTPAEALAVVKAQAADVIALKTT  277 (383)
T ss_dssp             ---------ESCSCTTCHHHHHHHHHHH-CCEEEESTTCSSHHHHHHHHHHTCCSEEEECTT
T ss_pred             ---------ECCCChhhHHHHHHHHhhC-CCCEEecCccCCHHHHHHHHHcCCCCEEEEccc
Confidence                     2455555566667777653 68999999987 68888887766 888876543

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=92.27  E-value=0.69  Score=34.73  Aligned_cols=134  Identities=13%  Similarity=0.099  Sum_probs=70.1

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEec-CC--CCHH----hHHhhHhcCCCCCeEEEEeee
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALK-PG--TSVE----EVYPLVEGANPVEMVLVMTVE   77 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~-~~--t~~~----~~~~~~~~~~~~d~vl~m~v~   77 (157)
                      +....+.+.+.|++.|+++.+...    ...+.++  +.++.-.++ |.  +..+    ..+...+  .+.|.|-+ .++
T Consensus        22 i~~l~~~a~~~g~~~v~v~~~~v~----~~~~~l~--~v~v~~v~~~P~g~~~~~~k~~~~~~A~~--~Gad~Id~-viN   92 (225)
T 1mzh_A           22 IEEFVLKSEELGIYAVCVNPYHVK----LASSIAK--KVKVCCVIGFPLGLNKTSVKVKEAVEAVR--DGAQELDI-VWN   92 (225)
T ss_dssp             HHHHHHHHHHTTCSEEEECGGGHH----HHHHHCS--SSEEEEEESTTTCCSCHHHHHHHHHHHHH--TTCSEEEE-ECC
T ss_pred             HHHHHHHHHHhCCeEEEECHHHHH----HHHHHhc--CCceeeEecCCCCccchhhhHHHHHHHHH--cCCCEEEE-Eec
Confidence            455666667899999999876422    2222222  454433343 11  1121    1222232  46676653 233


Q ss_pred             CCC--CCcccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhH----HHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           78 PGF--GGQKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTI----AEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        78 pG~--~gq~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i----~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      .|.  .++  .+..++.++++++....+.+-+   .++.+.+++    +.+.++|||.+...+......--.+.++.+++
T Consensus        93 ~g~~~~~~--~~~~~~~i~~v~~a~~pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~tstg~~~gga~~~~i~~v~~  170 (225)
T 1mzh_A           93 LSAFKSEK--YDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKS  170 (225)
T ss_dssp             HHHHHTTC--HHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCSSSCCCHHHHHHHHH
T ss_pred             HHHHhcCC--hHHHHHHHHHHHHHhcCceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHH
Confidence            332  121  2345566788877654555555   688887664    44577799999554433211111244455554


Q ss_pred             H
Q 031554          149 S  149 (157)
Q Consensus       149 ~  149 (157)
                      .
T Consensus       171 ~  171 (225)
T 1mzh_A          171 S  171 (225)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y

Probab=92.26  E-value=1.4  Score=28.07  Aligned_cols=100  Identities=19%  Similarity=0.206  Sum_probs=57.6

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~  112 (157)
                      .-+.+...|..+-...  .+..+.+..+.+  ..+|.|++-...|+..       .++-++++++..++.++. +.+.-+
T Consensus        18 l~~~l~~~g~~vv~~~--~~~~~a~~~~~~--~~~dlil~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~   86 (120)
T 1tmy_A           18 LKDIITKAGYEVAGEA--TNGREAVEKYKE--LKPDIVTMDITMPEMN-------GIDAIKEIMKIDPNAKIIVCSAMGQ   86 (120)
T ss_dssp             HHHHHHHTTCEEEEEE--SSHHHHHHHHHH--HCCSEEEEECSCGGGC-------HHHHHHHHHHHCTTCCEEEEECTTC
T ss_pred             HHHHHhhcCcEEEEEE--CCHHHHHHHHHh--cCCCEEEEeCCCCCCc-------HHHHHHHHHhhCCCCeEEEEeCCCC
Confidence            3344555677632222  233333333332  3578887754445433       345667777766776655 455556


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      .+...+..++||+.++     .+.-++.+....+++.
T Consensus        87 ~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~  118 (120)
T 1tmy_A           87 QAMVIEAIKAGAKDFI-----VKPFQPSRVVEALNKV  118 (120)
T ss_dssp             HHHHHHHHHTTCCEEE-----ESSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcceeE-----eCCCCHHHHHHHHHHH
Confidence            7788888999999874     4444666655555543

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=92.23  E-value=1.6  Score=34.68  Aligned_cols=121  Identities=12%  Similarity=0.070  Sum_probs=69.7

Q ss_pred             HHHHHHHhCCCCEEEEcccC--Ccch-HHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEI--SKDN-WQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~--~~~~-~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      .+.+.+.+.|+-+ .+.-..  ..++ .....+.+++.  +.-+...++...+.+.+.+..+. .++|.|-+-.-.|-..
T Consensus        77 ~~a~aa~~~G~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~~~~~~~~-~gad~i~i~~~~~~~~  154 (349)
T 1p0k_A           77 SLARAASQAGIPL-AVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEM-IGANALQIHLNVIQEI  154 (349)
T ss_dssp             HHHHHHHHHTCCE-ECCCCTTTTTCHHHHHHHHHHHHHCSSSCEEEEEETTCCHHHHHHHHHH-TTCSEEEEEECTTTTC
T ss_pred             HHHHHHHHcCCcE-EeccchhcccCcccccceehhhhhCCCceeEEeecCCCCHHHHHHHHHh-cCCCeEEecccchhhh
Confidence            4556678888764 232211  1121 12344555553  33445556644555555555443 4689886543333111


Q ss_pred             Cc----ccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhHHHHHHcCCCEEEEc
Q 031554           82 GQ----KFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        82 gq----~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      .+    ......++.++++++.. +++|.+   +.|++.+.+..+.++|||.+++.
T Consensus       155 ~~~~~~~~~~~~~~~i~~vr~~~-~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~  209 (349)
T 1p0k_A          155 VMPEGDRSFSGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAAVDIG  209 (349)
T ss_dssp             --------CTTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSEEEEE
T ss_pred             cCCCCCcchHHHHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEc
Confidence            11    11112567788888764 677777   56689999999999999999984

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A

Probab=92.23  E-value=2.8  Score=32.85  Aligned_cols=119  Identities=10%  Similarity=0.122  Sum_probs=71.7

Q ss_pred             HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHHh--HHhhHhcCCCCCeEEEEee-eCCCCCcc
Q 031554            9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVEE--VYPLVEGANPVEMVLVMTV-EPGFGGQK   84 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~--~~~~~~~~~~~d~vl~m~v-~pG~~gq~   84 (157)
                      ++.+.+ .+|++-+......++  ++++++-+.|+-+++.-... |+.+.  +.+++......+.+++... ..++..  
T Consensus       102 ~~~l~~-~vd~~kIgA~~~~n~--~Ll~~~a~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~~~y~~--  176 (292)
T 1o60_A          102 CQPVAD-VVDIIQLPAFLARQT--DLVEAMAKTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTNFGYDN--  176 (292)
T ss_dssp             HHHHHT-TCSEEEECGGGTTCH--HHHHHHHHTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEECSTTC--
T ss_pred             HHHHHh-cCCEEEECcccccCH--HHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCc--
Confidence            344455 799999997655554  68888888898888876554 33322  2233222244566666532 221111  


Q ss_pred             cchhHHHHHHHHHhhCCCCcEEEE---------------cCCC---HhhHHHHHHcCCCEEEEcccc
Q 031554           85 FMPEMMDKVRSLRNRYPSLDIEVD---------------GGLG---PSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        85 ~~~~~~~ki~~l~~~~~~~~I~vd---------------GGI~---~~~i~~~~~~Gad~vV~GSai  133 (157)
                       ....+..+..+|+..++++|.+|               +|.+   ..-....+..|||++++=+-+
T Consensus       177 -~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~  242 (292)
T 1o60_A          177 -LIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHP  242 (292)
T ss_dssp             -EECCTTHHHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEES
T ss_pred             -cccCHHHHHHHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEecC
Confidence             11245556678887667899997               3443   334445678999999998765

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=92.21  E-value=3.8  Score=32.99  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc----cccCCCCHHHHHHHHHHHH
Q 031554           89 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS----SVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        89 ~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS----ai~~~~d~~~~~~~l~~~~  150 (157)
                      .++.|+.+|+.. +.++.+=|-.+.+.+..+.++|||+|++..    ......-..+.+.++++.+
T Consensus       217 ~~~~i~~lr~~~-~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v  281 (368)
T 2nli_A          217 SPRDIEEIAGHS-GLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERV  281 (368)
T ss_dssp             CHHHHHHHHHHS-SSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHc-CCCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHh
Confidence            566788888875 678888887889999999999999999943    2222233345555555543

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=92.21  E-value=1.1  Score=32.46  Aligned_cols=107  Identities=15%  Similarity=0.174  Sum_probs=60.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccC-CcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ++.+.++.+.+.|+|++.+-.-. ......+.++.+++.  +..+.+.++  ..++.+.+     .++|.|.+    ++.
T Consensus        27 ~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~--~~~~~a~~-----~gad~v~l----~~~   95 (215)
T 1xi3_A           27 PEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVD--DRVDVALA-----VDADGVQL----GPE   95 (215)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEE--SCHHHHHH-----HTCSEEEE----CTT
T ss_pred             hHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeEEEc--ChHHHHHH-----cCCCEEEE----CCc
Confidence            45688999999999999886321 111113444444432  234556664  44544433     37899865    221


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      .   ..   .+.+++++   .+..+.++- -+.+.+....+.|+|.+.+++
T Consensus        96 ~---~~---~~~~~~~~---~~~~~~v~~-~t~~e~~~~~~~g~d~i~~~~  136 (215)
T 1xi3_A           96 D---MP---IEVAKEIA---PNLIIGASV-YSLEEALEAEKKGADYLGAGS  136 (215)
T ss_dssp             S---CC---HHHHHHHC---TTSEEEEEE-SSHHHHHHHHHHTCSEEEEEC
T ss_pred             c---CC---HHHHHHhC---CCCEEEEec-CCHHHHHHHHhcCCCEEEEcC
Confidence            1   11   22333332   344454432 255667777889999998865

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=92.12  E-value=2.6  Score=31.99  Aligned_cols=67  Identities=15%  Similarity=0.214  Sum_probs=45.0

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      +.+.++.+.++|+|.+-+..-..-  +.+.++++.+|+...-+.++..-++++      .   .++|.++++.+.+.-
T Consensus        22 t~~~~~~l~~~GaD~IelG~S~g~t~~~~~~~v~~ir~~~~Pivl~~y~~n~i------~---~gvDg~iipdLp~ee   90 (234)
T 2f6u_A           22 TDEIIKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQYGLPIVVEPSDPSNV------V---YDVDYLFVPTVLNSA   90 (234)
T ss_dssp             CHHHHHHHHTTTCSEEEECCCTTCCHHHHHHHHHHHTTSCCCEEECCSSCCCC------C---CCSSEEEEEEETTBS
T ss_pred             cHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHHhcCCCCCEEEecCCcchh------h---cCCCEEEEcccCCCC
Confidence            356788999999999999963221  123778888887555444444333444      2   678888888887754

>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}

Probab=92.12  E-value=1.1  Score=29.73  Aligned_cols=102  Identities=14%  Similarity=0.285  Sum_probs=62.8

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI  111 (157)
                      .+-+.+++.|..+- ..   +..+.+...++. ..+|.|++-. .|+       ...++-++++++..++.+|. +.+.-
T Consensus        19 ~l~~~L~~~g~~v~-~~---~~~~~a~~~l~~-~~~dlvi~d~-~~~-------~~g~~~~~~l~~~~~~~pii~ls~~~   85 (142)
T 2qxy_A           19 AVKNALEKDGFNVI-WA---KNEQEAFTFLRR-EKIDLVFVDV-FEG-------EESLNLIRRIREEFPDTKVAVLSAYV   85 (142)
T ss_dssp             HHHHHHGGGTCEEE-EE---SSHHHHHHHHTT-SCCSEEEEEC-TTT-------HHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred             HHHHHHHhCCCEEE-EE---CCHHHHHHHHhc-cCCCEEEEeC-CCC-------CcHHHHHHHHHHHCCCCCEEEEECCC
Confidence            34444555676544 22   333333334432 4688888755 443       23466777788777777755 44555


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +.+......++|++.++     .+.-++.+....+++.++.
T Consensus        86 ~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~i~~~~~~  121 (142)
T 2qxy_A           86 DKDLIINSVKAGAVDYI-----LKPFRLDYLLERVKKIISS  121 (142)
T ss_dssp             CHHHHHHHHHHTCSCEE-----ESSCCHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHCCcceeE-----eCCCCHHHHHHHHHHHHhh
Confidence            67888889999999763     4445677777777776653

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=92.01  E-value=2.8  Score=30.97  Aligned_cols=133  Identities=15%  Similarity=0.131  Sum_probs=72.8

Q ss_pred             HHHHHHHHhCCCCEEEEcc------cCCcchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            6 LDYVEPLGKAGASGFTFHV------EISKDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~------e~~~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      .+.++.+.+.|+|++.+-.      ...... .+.++.+++. +....+.+..++|.+.++...+  .++|+|.+.....
T Consensus        26 ~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~-~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~--~Gad~v~vh~~~~  102 (230)
T 1rpx_A           26 GEQVKAIEQAGCDWIHVDVMDGRFVPNITIG-PLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIK--AGADIVSVHCEQS  102 (230)
T ss_dssp             HHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC-HHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHH--TTCSEEEEECSTT
T ss_pred             HHHHHHHHHCCCCEEEEeeccCCcccccccC-HHHHHHHHhccCCcEEEEEEecCHHHHHHHHHH--cCCCEEEEEecCc
Confidence            4567788899999998852      112223 5788888886 4554554443445555666654  5899997742200


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCCHhhHHHHHHcCCCEEEEccc--ccCC----CCHHHHHHHHHHHH
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCIVAGSS--VFGA----PEPAHVISLMRKSV  150 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG--GI~~~~i~~~~~~Gad~vV~GSa--i~~~----~d~~~~~~~l~~~~  150 (157)
                        .+    +...+.++.+++.  +..+.+.-  +-..+.+..+ ..++|.+...+.  .|..    +...+.++++++..
T Consensus       103 --~~----~~~~~~~~~~~~~--g~~ig~~~~p~t~~e~~~~~-~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~  173 (230)
T 1rpx_A          103 --ST----IHLHRTINQIKSL--GAKAGVVLNPGTPLTAIEYV-LDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKIC  173 (230)
T ss_dssp             --TC----SCHHHHHHHHHHT--TSEEEEEECTTCCGGGGTTT-TTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHH
T ss_pred             --cc----hhHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHH-HhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHH
Confidence              12    1223345555553  45555554  3233444443 468997733331  2321    23345556666554

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=91.85  E-value=1  Score=33.39  Aligned_cols=85  Identities=15%  Similarity=0.157  Sum_probs=52.3

Q ss_pred             HHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC
Q 031554           34 LVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~  112 (157)
                      +++.+++.++-+.+.. ++++-++.++.+++  .+++.|.+-.-         .+...+.++++++  ++..+.++-=++
T Consensus         6 ~~~~l~~~~ii~vi~~~~~~~~~~~~~~l~~--gGv~~iel~~k---------~~~~~~~i~~~~~--~~~~~gag~vl~   72 (207)
T 2yw3_A            6 PLAVLAESRLLPLLTVRGGEDLLGLARVLEE--EGVGALEITLR---------TEKGLEALKALRK--SGLLLGAGTVRS   72 (207)
T ss_dssp             -CHHHHHHCEEEEECCCSCCCHHHHHHHHHH--TTCCEEEEECS---------STHHHHHHHHHTT--SSCEEEEESCCS
T ss_pred             HHHHHHhCCEEEEEeCCCHHHHHHHHHHHHH--cCCCEEEEeCC---------ChHHHHHHHHHhC--CCCEEEeCeEee
Confidence            4455666666555533 44444556666664  46888776311         2344566777776  566666665455


Q ss_pred             HhhHHHHHHcCCCEEEEcc
Q 031554          113 PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GS  131 (157)
                      .+.+....++|||.+++|.
T Consensus        73 ~d~~~~A~~~GAd~v~~~~   91 (207)
T 2yw3_A           73 PKEAEAALEAGAAFLVSPG   91 (207)
T ss_dssp             HHHHHHHHHHTCSEEEESS
T ss_pred             HHHHHHHHHcCCCEEEcCC
Confidence            6888888888888887774

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*

Probab=91.82  E-value=2.3  Score=30.49  Aligned_cols=102  Identities=14%  Similarity=0.168  Sum_probs=63.7

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-  112 (157)
                      +-..+.+.|..+..+   .+..+.+..+.+  ..+|.|++-...|+..       .++-++++++..++.+|.+-.+-. 
T Consensus        18 l~~~L~~~g~~v~~~---~~~~~a~~~~~~--~~~dlvllD~~l~~~~-------g~~~~~~lr~~~~~~~ii~ls~~~~   85 (225)
T 1kgs_A           18 ITEALKKEMFTVDVC---YDGEEGMYMALN--EPFDVVILDIMLPVHD-------GWEILKSMRESGVNTPVLMLTALSD   85 (225)
T ss_dssp             HHHHHHHTTCEEEEE---SSHHHHHHHHHH--SCCSEEEEESCCSSSC-------HHHHHHHHHHTTCCCCEEEEESSCH
T ss_pred             HHHHHHHCCCEEEEE---CCHHHHHHHHhc--CCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCEEEEeCCCC
Confidence            334455667765422   233444443332  4689887755556533       355677777777777766555544 


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .+.+....++||+.++     .+.-++.+....++..++.
T Consensus        86 ~~~~~~~~~~ga~~~l-----~Kp~~~~~l~~~i~~~~~~  120 (225)
T 1kgs_A           86 VEYRVKGLNMGADDYL-----PKPFDLRELIARVRALIRR  120 (225)
T ss_dssp             HHHHHHTCCCCCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccEEE-----eCCCCHHHHHHHHHHHHhh
Confidence            5777888899999874     3445777777777777664

>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A

Probab=91.79  E-value=1.9  Score=28.60  Aligned_cols=107  Identities=13%  Similarity=0.216  Sum_probs=66.2

Q ss_pred             HHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcC
Q 031554           33 ELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGG  110 (157)
Q Consensus        33 ~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGG  110 (157)
                      .+-+.+.+.| ..+-.+   .+..+.+..+.+....+|.|++-...|+       ...++-++++++..++.+|. +.+-
T Consensus        35 ~l~~~L~~~g~~~v~~~---~~~~~~~~~~~~~~~~~dlvi~D~~l~~-------~~g~~~~~~l~~~~~~~~ii~lt~~  104 (146)
T 4dad_A           35 HLARLVGDAGRYRVTRT---VGRAAQIVQRTDGLDAFDILMIDGAALD-------TAELAAIEKLSRLHPGLTCLLVTTD  104 (146)
T ss_dssp             HHHHHHHHHCSCEEEEE---CCCHHHHTTCHHHHTTCSEEEEECTTCC-------HHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             HHHHHHhhCCCeEEEEe---CCHHHHHHHHHhcCCCCCEEEEeCCCCC-------ccHHHHHHHHHHhCCCCcEEEEeCC
Confidence            3445566667 654432   3455455444420025787776433343       24566777888877777655 4555


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      -+.+.+....++||+.+     +.+.-++.+....+++.++..+
T Consensus       105 ~~~~~~~~~~~~ga~~~-----l~Kp~~~~~L~~~i~~~~~~~~  143 (146)
T 4dad_A          105 ASSQTLLDAMRAGVRDV-----LRWPLEPRALDDALKRAAAQCA  143 (146)
T ss_dssp             CCHHHHHHHHTTTEEEE-----EESSCCHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHhCCcee-----EcCCCCHHHHHHHHHHHHhhhc
Confidence            56788888999999876     4455577777777777776543

>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}

Probab=91.79  E-value=2.3  Score=34.60  Aligned_cols=114  Identities=12%  Similarity=0.099  Sum_probs=72.4

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCC--------------cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHh
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEIS--------------KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVE   63 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~--------------~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~   63 (157)
                      +|+.+.+.   +.+.|...+=+..-..              +.. .+.++++|+. |  +.+.+..|-....+...++++
T Consensus       151 ~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d-~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~  229 (404)
T 4e5t_A          151 DADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERS-EAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLAR  229 (404)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHH-HHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHHH-HHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHH
Confidence            57776654   4567999999874321              223 5677788875 4  445555566666665544432


Q ss_pred             -c-CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           64 -G-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        64 -~-~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                       + -..++++          .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus       230 ~l~~~~i~~i----------EeP~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~  288 (404)
T 4e5t_A          230 RLEAYDPLWF----------EEPIPPEKPEDMAEVARYT-SIPVATGERLCTKYEFSRVLETGAASILQM  288 (404)
T ss_dssp             HHGGGCCSEE----------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHHHTCCSEECC
T ss_pred             HHhhcCCcEE----------ECCCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHhCCCCEEec
Confidence             1 0134554          2444455566677777764 79999999998 58888887766 787744

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=91.79  E-value=1.7  Score=33.65  Aligned_cols=98  Identities=16%  Similarity=0.202  Sum_probs=60.6

Q ss_pred             HHHHHHHHHcCCceEE-EecCCCC-----HHhHHhhHhcCCCCCeEEEEe--eeCCCCCcccch-------------hHH
Q 031554           32 QELVQRIKSKGMRPGV-ALKPGTS-----VEEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMP-------------EMM   90 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl-~l~~~t~-----~~~~~~~~~~~~~~d~vl~m~--v~pG~~gq~~~~-------------~~~   90 (157)
                      .+.++.+|+.|.+.-+ .+...+|     .+.++.+.+  .++|+|-+.-  .+|=.+|.....             ..+
T Consensus         6 ~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~--~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~   83 (267)
T 3vnd_A            6 QAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVD--NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCF   83 (267)
T ss_dssp             HHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence            5666777776655433 4555555     333444443  5889887741  234444433322             346


Q ss_pred             HHHHHHHhhCCCCcEEEEcCCCH-------hhHHHHHHcCCCEEEEcc
Q 031554           91 DKVRSLRNRYPSLDIEVDGGLGP-------STIAEAASAGANCIVAGS  131 (157)
Q Consensus        91 ~ki~~l~~~~~~~~I~vdGGI~~-------~~i~~~~~~Gad~vV~GS  131 (157)
                      +-++++|+...++++.+=+=.|+       +-++.+.++|+|++++.-
T Consensus        84 ~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~D  131 (267)
T 3vnd_A           84 DIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIAD  131 (267)
T ss_dssp             HHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETT
T ss_pred             HHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCC
Confidence            77888887756778777654453       346788999999998863

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=91.78  E-value=3.8  Score=32.06  Aligned_cols=118  Identities=15%  Similarity=0.117  Sum_probs=69.8

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCH---HhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSV---EEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~---~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      .++.+.+. +|++-+......+.  ++++++-+.|+-+++.-... |+.   ..++++.+. ..-+++++-... .|+- 
T Consensus       103 ~v~~l~~~-vd~lqIgA~~~~n~--~LLr~va~~gkPVilK~G~~~t~~ei~~ave~i~~~-Gn~~i~L~erg~-~y~~-  176 (285)
T 3sz8_A          103 QAAPVAEI-ADVLQVPAFLARQT--DLVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEV-GNDRVMLCERGS-SFGY-  176 (285)
T ss_dssp             GHHHHHTT-CSEEEECGGGTTCH--HHHHHHHHTSSCEEEECCTTSCGGGTHHHHHHHHHT-TCCCEEEEECCE-ECSS-
T ss_pred             HHHHHHHh-CCEEEECccccCCH--HHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHc-CCCcEEEEeCCC-CCCC-
Confidence            34556666 89999987554554  68888888898888876543 433   334444432 334555443222 2211 


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEE---------------cCCC---HhhHHHHHHcCCCEEEEcc
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVD---------------GGLG---PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vd---------------GGI~---~~~i~~~~~~Gad~vV~GS  131 (157)
                      .-..-.+..+..+|+..++++|.+|               ||-+   ..-....+.+|||++++=.
T Consensus       177 ~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~  242 (285)
T 3sz8_A          177 DNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEA  242 (285)
T ss_dssp             SCEECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEE
T ss_pred             CcCccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEe
Confidence            1111235567778888667999998               4433   2334556789999988864

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=91.67  E-value=0.37  Score=37.92  Aligned_cols=117  Identities=15%  Similarity=0.204  Sum_probs=72.2

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-------------chHHHHHHHHHHcCCceEEEecCCC---------CHHhHHhhHh
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-------------DNWQELVQRIKSKGMRPGVALKPGT---------SVEEVYPLVE   63 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-------------~~~~~~i~~ir~~g~~~gl~l~~~t---------~~~~~~~~~~   63 (157)
                      .+.+..+.++|++.|++-.-..+             +...+.|+++++.+...++.++-.|         -+++.+.|.+
T Consensus       100 ~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~e  179 (287)
T 3b8i_A          100 MRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQE  179 (287)
T ss_dssp             HHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHH
Confidence            44567788899999988533210             0125677778887765444443222         2345556665


Q ss_pred             cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCCH-hhHHHHHHcCCCEEEEcccccCC
Q 031554           64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLGP-STIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                        .++|.|.+=++.           ..+-++++.+..+ ++ +.+.||-++ -+..+|.+.|+..++.|...+++
T Consensus       180 --AGAd~i~~e~~~-----------~~~~~~~i~~~~~-~P~ii~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ra  240 (287)
T 3b8i_A          180 --AGADGICLVGVR-----------DFAHLEAIAEHLH-IPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFA  240 (287)
T ss_dssp             --TTCSEEEEECCC-----------SHHHHHHHHTTCC-SCEEEECTTCGGGCCHHHHHHTTEEEEECCCHHHHH
T ss_pred             --cCCCEEEecCCC-----------CHHHHHHHHHhCC-CCEEEeCCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence              589998773221           1234455555442 33 345566664 67899999999999999887753

>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}

Probab=91.64  E-value=2  Score=28.41  Aligned_cols=101  Identities=12%  Similarity=0.125  Sum_probs=60.6

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdGGI~  112 (157)
                      +-..+.+.|..+.. .  .+..+.+..+. . ..+|.|++-...|+..|       ++-++++++.. ..+| .+.+.-+
T Consensus        20 l~~~L~~~g~~v~~-~--~~~~~al~~~~-~-~~~dlvllD~~l~~~~g-------~~l~~~l~~~~-~~~ii~ls~~~~   86 (136)
T 2qzj_A           20 LKGFLEEKGISIDL-A--YNCEEAIGKIF-S-NKYDLIFLEIILSDGDG-------WTLCKKIRNVT-TCPIVYMTYINE   86 (136)
T ss_dssp             HHHHHHTTTCEEEE-E--SSHHHHHHHHH-H-CCCSEEEEESEETTEEH-------HHHHHHHHTTC-CCCEEEEESCCC
T ss_pred             HHHHHHHCCCEEEE-E--CCHHHHHHHHH-h-cCCCEEEEeCCCCCCCH-------HHHHHHHccCC-CCCEEEEEcCCC
Confidence            34445556765432 2  33334343333 2 46898877555565333       45566666654 5554 4555566


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .+.+....++||+.++     .+.-++.+....+++.++.
T Consensus        87 ~~~~~~~~~~ga~~~l-----~KP~~~~~L~~~l~~~~~~  121 (136)
T 2qzj_A           87 DQSILNALNSGGDDYL-----IKPLNLEILYAKVKAILRR  121 (136)
T ss_dssp             HHHHHHHHHTTCCEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcEEE-----ECCCCHHHHHHHHHHHHHH
Confidence            7888889999999874     4445777777777766654

>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}

Probab=91.58  E-value=2.1  Score=28.68  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=60.6

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCC-CCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEc
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANP-VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdG  109 (157)
                      ...++..-+.|..+..+   .+..+.+..+.+  .. .|.|++-...|+..       .++-++++++..++.+|. +.+
T Consensus        17 ~~~l~~~L~~~~~v~~~---~~~~~a~~~l~~--~~~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~   84 (151)
T 3kcn_A           17 LNTLKRNLSFDFEVTTC---ESGPEALACIKK--SDPFSVIMVDMRMPGME-------GTEVIQKARLISPNSVYLMLTG   84 (151)
T ss_dssp             HHHHHHHHTTTSEEEEE---SSHHHHHHHHHH--SCCCSEEEEESCCSSSC-------HHHHHHHHHHHCSSCEEEEEEC
T ss_pred             HHHHHHHhccCceEEEe---CCHHHHHHHHHc--CCCCCEEEEeCCCCCCc-------HHHHHHHHHhcCCCcEEEEEEC
Confidence            34444444446544322   333344444432  23 48888755556533       355667777777777654 555


Q ss_pred             CCCHhhHHHHHHcC-CCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          110 GLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       110 GI~~~~i~~~~~~G-ad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .-+.+.+.+...+| ++.++     .+.-++.+....+++.++.
T Consensus        85 ~~~~~~~~~~~~~g~~~~~l-----~KP~~~~~L~~~i~~~l~~  123 (151)
T 3kcn_A           85 NQDLTTAMEAVNEGQVFRFL-----NKPCQMSDIKAAINAGIKQ  123 (151)
T ss_dssp             GGGHHHHHHHHHHTCCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCeeEEE-----cCCCCHHHHHHHHHHHHHH
Confidence            56677888888999 88874     3444666666666665543

>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}

Probab=91.57  E-value=1.3  Score=36.04  Aligned_cols=109  Identities=9%  Similarity=0.138  Sum_probs=72.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGF   80 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~   80 (157)
                      ..++.+.+.|.+.+=++.-.. +.. .+.++++|+. |  +...+..|-..+.+....+++.+.  .+++|         
T Consensus       161 ~~a~~~~~~G~~~iKlK~g~~~~~d-~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i---------  230 (392)
T 3ddm_A          161 DVVARKAAEGYRAFKLKVGFDDARD-VRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWL---------  230 (392)
T ss_dssp             HHHHHHHHHTCCCEEEECSSCHHHH-HHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEE---------
T ss_pred             HHHHHHHHcCCCEEEEecCCCHHHH-HHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEE---------
Confidence            445566778999999986532 223 5677888886 4  556677777777766554433102  34444         


Q ss_pred             CCcccchhH-HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEE
Q 031554           81 GGQKFMPEM-MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCI  127 (157)
Q Consensus        81 ~gq~~~~~~-~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~v  127 (157)
                       .|++.+.. ++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++
T Consensus       231 -EeP~~~~d~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v  278 (392)
T 3ddm_A          231 -EEPLRADRPAAEWAELAQAA-PMPLAGGENIAGVAAFETALAARSLRVM  278 (392)
T ss_dssp             -ECCSCTTSCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHHTCEEEE
T ss_pred             -ECCCCccchHHHHHHHHHhc-CCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence             24455445 66677777763 68999999998 68888887766 6665

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A

Probab=91.48  E-value=2.1  Score=34.75  Aligned_cols=110  Identities=10%  Similarity=-0.009  Sum_probs=71.3

Q ss_pred             HHHHHHhCCCCEEEEc-cc----CCcchHHHHHHHHHHc-C--CceEEEecCCC-CHHhHHhhHhcCC--CCCeEEEEee
Q 031554            8 YVEPLGKAGASGFTFH-VE----ISKDNWQELVQRIKSK-G--MRPGVALKPGT-SVEEVYPLVEGAN--PVEMVLVMTV   76 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh-~e----~~~~~~~~~i~~ir~~-g--~~~gl~l~~~t-~~~~~~~~~~~~~--~~d~vl~m~v   76 (157)
                      .++.+.+.|...+=++ ..    ..+.. .+.++++|+. |  +.+.+..|-.. ..+...++++.+.  +++++     
T Consensus       164 ~a~~~~~~G~~~~K~~k~g~~~~~~~~d-~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~i-----  237 (394)
T 3mkc_A          164 LLEKAKAHNIRAVKVCVPIKADWSTKEV-AYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFA-----  237 (394)
T ss_dssp             HHHHHHHTTCSEEEEECCTTCCCCHHHH-HHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEE-----
T ss_pred             HHHHHHHcCCCEEEeCccCCCccCHHHH-HHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEE-----
Confidence            4556678899999994 32    12233 5677888875 4  45555666666 6665544443112  34444     


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                           .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus       238 -----EeP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~  286 (394)
T 3mkc_A          238 -----EATLQHDDLSGHAKLVENT-RSRICGAEMSTTRFEAEEWITKGKVHLLQS  286 (394)
T ss_dssp             -----ESCSCTTCHHHHHHHHHHC-SSCBEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred             -----ECCCCchhHHHHHHHHhhC-CCCEEeCCCCCCHHHHHHHHHcCCCCeEec
Confidence                 2445555566677777764 69999999998 68888888876 787744

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=91.46  E-value=3.1  Score=30.30  Aligned_cols=106  Identities=15%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH-cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKS-KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~-~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +.+.++.+.+.|++++.+.... ... .+.++.+++ .+..+.+....-...+.++..++  .++|.|.+    +.    
T Consensus        21 ~~~~~~~~~~~G~~~i~l~~~~-~~~-~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~--~Gad~V~~----~~----   88 (212)
T 2v82_A           21 ALAHVGAVIDAGFDAVEIPLNS-PQW-EQSIPAIVDAYGDKALIGAGTVLKPEQVDALAR--MGCQLIVT----PN----   88 (212)
T ss_dssp             HHHHHHHHHHHTCCEEEEETTS-TTH-HHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHH--TTCCEEEC----SS----
T ss_pred             HHHHHHHHHHCCCCEEEEeCCC-hhH-HHHHHHHHHhCCCCeEEEeccccCHHHHHHHHH--cCCCEEEe----CC----
Confidence            4556677788899999986443 233 456665554 46544442222233445555554  58898852    11    


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                       ..+...   +..++.  +.++.+. --|++.+....+.|+|.+.+
T Consensus        89 -~~~~~~---~~~~~~--g~~~~~g-~~t~~e~~~a~~~G~d~v~v  127 (212)
T 2v82_A           89 -IHSEVI---RRAVGY--GMTVCPG-CATATEAFTALEAGAQALKI  127 (212)
T ss_dssp             -CCHHHH---HHHHHT--TCEEECE-ECSHHHHHHHHHTTCSEEEE
T ss_pred             -CCHHHH---HHHHHc--CCCEEee-cCCHHHHHHHHHCCCCEEEE
Confidence             122332   333333  3333222 23567777778899999874

>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}

Probab=91.44  E-value=1.7  Score=35.28  Aligned_cols=111  Identities=7%  Similarity=-0.026  Sum_probs=71.7

Q ss_pred             HHHHHHhCCCCEEEEc-cc----CCcchHHHHHHHHHHc-C--CceEEEecCCC-CHHhHHhhHhcCC--CCCeEEEEee
Q 031554            8 YVEPLGKAGASGFTFH-VE----ISKDNWQELVQRIKSK-G--MRPGVALKPGT-SVEEVYPLVEGAN--PVEMVLVMTV   76 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh-~e----~~~~~~~~~i~~ir~~-g--~~~gl~l~~~t-~~~~~~~~~~~~~--~~d~vl~m~v   76 (157)
                      .++.+.+.|...+=++ ..    ..+.. .+.++++|+. |  +.+.+..|-.. ..+...++++.+.  +++++     
T Consensus       159 ~a~~~~~~G~~~~K~~k~g~~~~~~~~d-~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~i-----  232 (394)
T 3mqt_A          159 LIAKAKERGAKAVKVCIIPNDKVSDKEI-VAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFI-----  232 (394)
T ss_dssp             HHHHHHHTTCSEEEEECCCCTTSCHHHH-HHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEE-----
T ss_pred             HHHHHHHcCCCEEEecccCCCccCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEE-----
Confidence            4556678899999994 22    12233 5678888875 4  45555666666 6665444443112  34444     


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                           .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+-
T Consensus       233 -----EeP~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k  282 (394)
T 3mqt_A          233 -----EACLQHDDLIGHQKLAAAI-NTRLCGAEMSTTRFEAQEWLEKTGISVVQSD  282 (394)
T ss_dssp             -----ESCSCTTCHHHHHHHHHHS-SSEEEECTTCCHHHHHHHHHHHHCCSEECCC
T ss_pred             -----ECCCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCeEecC
Confidence                 2445555566677777763 79999999998 68888887765 8887554

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}

Probab=91.43  E-value=2  Score=28.13  Aligned_cols=103  Identities=12%  Similarity=0.104  Sum_probs=62.9

Q ss_pred             HHHHHHHH-cCCc-eEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEE-E
Q 031554           33 ELVQRIKS-KGMR-PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIE-V  107 (157)
Q Consensus        33 ~~i~~ir~-~g~~-~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I~-v  107 (157)
                      .+-+.+.+ .|.. +..+-   +..+.+..+. . ..+|.|++-...|+..       .++-++++++  ..++++|. +
T Consensus        23 ~l~~~L~~~~~~~~v~~~~---~~~~a~~~l~-~-~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~   90 (143)
T 3cnb_A           23 MLTQFLENLFPYAKIKIAY---NPFDAGDLLH-T-VKPDVVMLDLMMVGMD-------GFSICHRIKSTPATANIIVIAM   90 (143)
T ss_dssp             HHHHHHHHHCTTCEEEEEC---SHHHHHHHHH-H-TCCSEEEEETTCTTSC-------HHHHHHHHHTSTTTTTSEEEEE
T ss_pred             HHHHHHHhccCccEEEEEC---CHHHHHHHHH-h-cCCCEEEEecccCCCc-------HHHHHHHHHhCccccCCcEEEE
Confidence            34445566 6877 33332   3333333333 2 4688887754445422       4556777777  45667655 4


Q ss_pred             EcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          108 DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .+.-+.+...+..++|++.++     .+.-++.+....+++.++.
T Consensus        91 s~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~i~~~~~~  130 (143)
T 3cnb_A           91 TGALTDDNVSRIVALGAETCF-----GKPLNFTLLEKTIKQLVEQ  130 (143)
T ss_dssp             ESSCCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHHT
T ss_pred             eCCCCHHHHHHHHhcCCcEEE-----eCCCCHHHHHHHHHHHHHh
Confidence            555667888889999999874     3445777777777777664

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=91.34  E-value=2.2  Score=28.51  Aligned_cols=86  Identities=15%  Similarity=0.168  Sum_probs=56.1

Q ss_pred             CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           54 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        54 ~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      +.+.+...++. ..+|.|++-...|+.       ..++-++++++..++++| .+.+.-+.+...++.++||+.++.   
T Consensus        54 ~~~~al~~l~~-~~~dlii~D~~l~~~-------~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~---  122 (150)
T 4e7p_A           54 NGQEAIQLLEK-ESVDIAILDVEMPVK-------TGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVL---  122 (150)
T ss_dssp             SHHHHHHHHTT-SCCSEEEECSSCSSS-------CHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEE---
T ss_pred             CHHHHHHHhhc-cCCCEEEEeCCCCCC-------cHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEe---
Confidence            44444444433 468888764444543       246677777877777765 455666688889999999998744   


Q ss_pred             ccCCCCHHHHHHHHHHHHHH
Q 031554          133 VFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       133 i~~~~d~~~~~~~l~~~~~~  152 (157)
                        +.-++.+....+++.++.
T Consensus       123 --Kp~~~~~l~~~i~~~~~~  140 (150)
T 4e7p_A          123 --KERSIADLMQTLHTVLEG  140 (150)
T ss_dssp             --TTSCHHHHHHHHHHHHTT
T ss_pred             --cCCCHHHHHHHHHHHHcC
Confidence              445777777777776654

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=91.33  E-value=1.7  Score=34.81  Aligned_cols=102  Identities=15%  Similarity=0.143  Sum_probs=64.9

Q ss_pred             HHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCCH
Q 031554           35 VQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGP  113 (157)
Q Consensus        35 i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~~  113 (157)
                      -+.+.+.|..+..+-   +..+.+..+.+  ..+|.|++--..|+.+|-       +-++++++..++.+|. +.|--+.
T Consensus        17 ~~~L~~~g~~v~~a~---~~~eal~~l~~--~~~DlvllDi~mP~~dG~-------ell~~lr~~~~~~pvI~lT~~~~~   84 (368)
T 3dzd_A           17 SAILEEEGYHPDTAK---TLREAEKKIKE--LFFPVIVLDVWMPDGDGV-------NFIDFIKENSPDSVVIVITGHGSV   84 (368)
T ss_dssp             HHHHHHTTCEEEEES---SHHHHHHHHHH--BCCSEEEEESEETTEETT-------THHHHHHHHCTTCEEEEEECSSCC
T ss_pred             HHHHHHcCCEEEEEC---CHHHHHHHHHh--CCCCEEEEeCCCCCCCHH-------HHHHHHHhhCCCCeEEEEeCCCCH
Confidence            344566787654332   33333333332  468988876666876653       3455666666776654 5555667


Q ss_pred             hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554          114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus       114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      +.+.+..++||+.+     +.+.-++.+....+++.++..
T Consensus        85 ~~~~~a~~~Ga~~y-----l~KP~~~~~L~~~i~~~l~~~  119 (368)
T 3dzd_A           85 DTAVKAIKKGAYEF-----LEKPFSVERFLLTIKHAFEEY  119 (368)
T ss_dssp             HHHHHHHHHTCCEE-----EESSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcceE-----EeCCCCHHHHHHHHHHHHHHh
Confidence            88889999999977     455557777777777776653

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=91.28  E-value=0.97  Score=32.75  Aligned_cols=82  Identities=18%  Similarity=0.229  Sum_probs=48.1

Q ss_pred             ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC--CcEEEEcCCCHhhHHHHHH
Q 031554           44 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--LDIEVDGGLGPSTIAEAAS  121 (157)
Q Consensus        44 ~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~--~~I~vdGGI~~~~i~~~~~  121 (157)
                      ++-+.....++.+.++.+.+  ..+|.+++--..|+.+|       ++-++++++..+.  +++.+.++. .+.+.++.+
T Consensus         4 ~v~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~~p~~~g-------~~~~~~l~~~~~~~~i~vi~~~~~-~~~~~~~~~   73 (237)
T 3cwo_X            4 RVLIVDDATNGREAVEKYKE--LKPDIVTMDITMPEMNG-------IDAIKEIMKIDPNAKIIVCSAMGQ-QAMVIEAIK   73 (237)
T ss_dssp             CEEEEECCCSSSTTHHHHHH--HCCSCEEEECCSTTSSH-------HHHHHHHHHHSSSCCEEEECCSST-HHHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH-------HHHHHHHHHhCCCCCEEEEECCCC-HHHHHHHHH
Confidence            33333334444444444432  35787666544565443       4455666665443  445444443 788889999


Q ss_pred             cCCCEEEEcccccC
Q 031554          122 AGANCIVAGSSVFG  135 (157)
Q Consensus       122 ~Gad~vV~GSai~~  135 (157)
                      +|++.++....-|.
T Consensus        74 ~Ga~~~l~kp~~~~   87 (237)
T 3cwo_X           74 AGAKDFIVNTAAVE   87 (237)
T ss_dssp             TTCCEEEESHHHHH
T ss_pred             CCHHheEeCCcccC
Confidence            99999998765443

>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*

Probab=91.25  E-value=4.9  Score=32.41  Aligned_cols=117  Identities=9%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCC--CCeEEEE
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANP--VEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~--~d~vl~m   74 (157)
                      +|+..++.   +.+.|...+=+..-.. +.. .+.++++|+. |  +...+..|-..+.+...++.+.+..  .+.-.+ 
T Consensus       142 ~~e~~~~~a~~~~~~Gf~~~KlK~g~~~~~d-~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l~~i-  219 (379)
T 3r0u_A          142 NVAETIQNIQNGVEANFTAIKVKTGADFNRD-IQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEII-  219 (379)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECSSCHHHH-HHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCEEEE-
T ss_pred             CHHHHHHHHHHHHHcCCCEEeeecCCCHHHH-HHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCcEEE-
Confidence            56655544   4567999998876432 223 5677888885 4  5566667777777666555431023  222221 


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                             .|++.+..++-.+++++.. +++|+.|..+. ...+..+++.| +|++.+-
T Consensus       220 -------EeP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k  269 (379)
T 3r0u_A          220 -------EQPVKYYDIKAMAEITKFS-NIPVVADESVFDAKDAERVIDEQACNMINIK  269 (379)
T ss_dssp             -------ECCSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHHHHHTTCCSEEEEC
T ss_pred             -------ECCCCcccHHHHHHHHhcC-CCCEEeCCccCCHHHHHHHHHcCCCCEEEEC
Confidence                   2445555566677777764 69999999987 68888888876 6887553

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=91.25  E-value=2  Score=27.80  Aligned_cols=103  Identities=15%  Similarity=0.209  Sum_probs=56.9

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdGGI  111 (157)
                      .+-+.+++.|..+-.   ..+..+.++ .++. ..+|.|++-...|+..|       ++-++++++..++.++ .+.+.-
T Consensus        22 ~l~~~L~~~g~~v~~---~~~~~~a~~-~l~~-~~~dlvi~d~~l~~~~g-------~~~~~~l~~~~~~~~ii~~t~~~   89 (130)
T 3eod_A           22 LLDSWFSSLGATTVL---AADGVDALE-LLGG-FTPDLMICDIAMPRMNG-------LKLLEHIRNRGDQTPVLVISATE   89 (130)
T ss_dssp             HHHHHHHHTTCEEEE---ESCHHHHHH-HHTT-CCCSEEEECCC-----C-------HHHHHHHHHTTCCCCEEEEECCC
T ss_pred             HHHHHHHhCCceEEE---eCCHHHHHH-HHhc-CCCCEEEEecCCCCCCH-------HHHHHHHHhcCCCCCEEEEEcCC
Confidence            344456667776433   233334344 4432 46788877444455333       4566777777666664 456666


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHHH
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFGAP-EPAHVISLMRKSVED  152 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~~l~~~~~~  152 (157)
                      +.+...+..++||+.++     .+.- ++.+..+.+++.++.
T Consensus        90 ~~~~~~~~~~~g~~~~l-----~KP~~~~~~l~~~i~~~l~~  126 (130)
T 3eod_A           90 NMADIAKALRLGVEDVL-----LKPVKDLNRLREMVFACLYP  126 (130)
T ss_dssp             CHHHHHHHHHHCCSEEE-----ESCC---CHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCCEEE-----eCCCCcHHHHHHHHHHHhch
Confidence            67888889999999874     3333 445555555555443

>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*

Probab=91.20  E-value=1.8  Score=34.98  Aligned_cols=113  Identities=14%  Similarity=0.197  Sum_probs=73.3

Q ss_pred             ChHHHHHHH---HhC-CCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEE
Q 031554            4 NPLDYVEPL---GKA-GASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVL   72 (157)
Q Consensus         4 ~p~~~i~~~---~~~-gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl   72 (157)
                      +|+..++.+   .+. |...+=+..-.  .+.. .+.++++|+. |  +...+..|-....+...++++.+.  .+++| 
T Consensus       167 ~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~d-~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i-  244 (383)
T 3toy_A          167 DARDDERTLRTACDEHGFRAIKSKGGHGDLATD-EAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWI-  244 (383)
T ss_dssp             CHHHHHHHHHHHHHTSCCCEEEEECCSSCHHHH-HHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE-
T ss_pred             CHHHHHHHHHHHHHccCCcEEEEecCCCCHHHH-HHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEE-
Confidence            566665544   556 99999988643  2334 5778888885 5  445556676667665544443102  34444 


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV  128 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV  128 (157)
                               .|++.+..++-.+++++.. +++|+.|..+. ...+..+++.| +|++.
T Consensus       245 ---------EeP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~  292 (383)
T 3toy_A          245 ---------EEPVPQENLSGHAAVRERS-EIPIQAGENWWFPRGFAEAIAAGASDFIM  292 (383)
T ss_dssp             ---------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHHHTCCSEEC
T ss_pred             ---------ECCCCcchHHHHHHHHhhc-CCCEEeCCCcCCHHHHHHHHHcCCCCEEE
Confidence                     3455555566777777764 79999999998 58888887766 67763

>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*

Probab=91.16  E-value=2.1  Score=32.20  Aligned_cols=100  Identities=23%  Similarity=0.277  Sum_probs=60.6

Q ss_pred             HHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC--CCcEE-EEcCCCH
Q 031554           37 RIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP--SLDIE-VDGGLGP  113 (157)
Q Consensus        37 ~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~--~~~I~-vdGGI~~  113 (157)
                      .+++.|..+..+   .+..+.++.+.+. ..+|.|++--..||.+|       ++-++++|+..+  +++|. +.+.-+.
T Consensus       143 ~L~~~~~~v~~a---~~~~eal~~l~~~-~~~dlvllD~~mP~~dG-------~~l~~~lr~~~~~~~~~ii~~s~~~~~  211 (259)
T 3luf_A          143 QLRKQLLQVHEA---SHAREALATLEQH-PAIRLVLVDYYMPEIDG-------ISLVRMLRERYSKQQLAIIGISVSDKR  211 (259)
T ss_dssp             HHHTTTCEEEEE---SSHHHHHHHHHHC-TTEEEEEECSCCSSSCH-------HHHHHHHHHHCCTTTSEEEEEECSSSS
T ss_pred             HHHHcCcEEEEe---CCHHHHHHHHhcC-CCCCEEEEcCCCCCCCH-------HHHHHHHHhccCCCCCeEEEEEccCCH
Confidence            344556554433   2333444433311 23677766444576554       556667776643  45554 4566667


Q ss_pred             hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +...+..++||+.+     |.+.-++.+....+++.++.
T Consensus       212 ~~~~~a~~~Ga~~y-----l~KP~~~~~L~~~i~~~l~~  245 (259)
T 3luf_A          212 GLSARYLKQGANDF-----LNQPFEPEELQCRVSHNLEA  245 (259)
T ss_dssp             SHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcChhhe-----EcCCCCHHHHHHHHHHHHHh
Confidence            78888899999987     55656788777777777664

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=91.01  E-value=3.9  Score=31.27  Aligned_cols=98  Identities=10%  Similarity=0.205  Sum_probs=55.8

Q ss_pred             HHHHHHHHHcCCce-EEEecCCCC-H----HhHHhhHhcCCCCCeEEEEe--eeCCCCCcccch--------------hH
Q 031554           32 QELVQRIKSKGMRP-GVALKPGTS-V----EEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMP--------------EM   89 (157)
Q Consensus        32 ~~~i~~ir~~g~~~-gl~l~~~t~-~----~~~~~~~~~~~~~d~vl~m~--v~pG~~gq~~~~--------------~~   89 (157)
                      .+.++.+|+.|.+. ...+-+.+| .    +.++.+.+  .++|+|-+-.  .+|-.+|. +.+              ..
T Consensus         5 ~~~f~~~~~~~~~~~i~~i~~gdp~~~~~~~~~~~l~~--~GaD~ieig~P~sdp~~DG~-~i~~a~~~al~~G~~~~~~   81 (268)
T 1qop_A            5 ENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLID--AGADALELGVPFSDPLADGP-TIQNANLRAFAAGVTPAQC   81 (268)
T ss_dssp             HHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHH--TTCSSEEEECCCSCCTTCCH-HHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHH--CCCCEEEECCCCCCccCCCH-HHHHHHHHHHHcCCCHHHH
Confidence            55666777665543 224434444 2    23444433  5799988742  12222222 221              23


Q ss_pred             HHHHHHHHhhCCCCcEEEEcCCC-------HhhHHHHHHcCCCEEEEccc
Q 031554           90 MDKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        90 ~~ki~~l~~~~~~~~I~vdGGI~-------~~~i~~~~~~Gad~vV~GSa  132 (157)
                      ++-++++|+.+.++++.+-+-.|       .+-++.+.++|+|++++...
T Consensus        82 ~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~  131 (268)
T 1qop_A           82 FEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADV  131 (268)
T ss_dssp             HHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTC
T ss_pred             HHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCC
Confidence            45688888875577776643233       35667899999999888643

>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E

Probab=90.88  E-value=1.8  Score=27.79  Aligned_cols=99  Identities=11%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             HHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCCH
Q 031554           35 VQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGP  113 (157)
Q Consensus        35 i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~~  113 (157)
                      -+.+.+.|..+. ..  .+..+.+..+.+  ..+|.+++-...|+..|       ++-++++++..++.++.+ .+.-+.
T Consensus        20 ~~~l~~~~~~v~-~~--~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g-------~~~~~~l~~~~~~~~ii~~s~~~~~   87 (124)
T 1srr_A           20 NEVFNKEGYQTF-QA--ANGLQALDIVTK--ERPDLVLLDMKIPGMDG-------IEILKRMKVIDENIRVIIMTAYGEL   87 (124)
T ss_dssp             HHHHHTTTCEEE-EE--SSHHHHHHHHHH--HCCSEEEEESCCTTCCH-------HHHHHHHHHHCTTCEEEEEESSCCH
T ss_pred             HHHHHHCCcEEE-Ee--CCHHHHHHHHhc--cCCCEEEEecCCCCCCH-------HHHHHHHHHhCCCCCEEEEEccCch
Confidence            344555676543 22  333333433332  36788877555566443       445666676667777554 454557


Q ss_pred             hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      +...+..++|++.++     .+.-++.+....+++.+
T Consensus        88 ~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~~  119 (124)
T 1srr_A           88 DMIQESKELGALTHF-----AKPFDIDEIRDAVKKYL  119 (124)
T ss_dssp             HHHHHHHHHTCCCEE-----ESSCCHHHHHHHHHHHS
T ss_pred             HHHHHHHhcChHhhc-----cCCCCHHHHHHHHHHHh
Confidence            778888899998764     44456666666666543

>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A

Probab=90.87  E-value=2.1  Score=27.24  Aligned_cols=102  Identities=22%  Similarity=0.152  Sum_probs=60.6

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~  112 (157)
                      .-+.+.+.|..+..+   .+..+.+..+. . ..+|.+++-...|+..       .++-++++++..++.++. +.+.-+
T Consensus        16 l~~~l~~~g~~v~~~---~~~~~a~~~~~-~-~~~dlil~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~   83 (121)
T 2pl1_A           16 LKVQIQDAGHQVDDA---EDAKEADYYLN-E-HIPDIAIVDLGLPDED-------GLSLIRRWRSNDVSLPILVLTARES   83 (121)
T ss_dssp             HHHHHHHTTCEEEEE---SSHHHHHHHHH-H-SCCSEEEECSCCSSSC-------HHHHHHHHHHTTCCSCEEEEESCCC
T ss_pred             HHHHHhhcCCEEEEe---CCHHHHHHHHh-c-cCCCEEEEecCCCCCC-------HHHHHHHHHhcCCCCCEEEEecCCC
Confidence            344455667654322   23333333332 2 4678887644445433       345667777666666654 455556


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .+......++|++.++.     +.-++.+....+++.++.
T Consensus        84 ~~~~~~~~~~g~~~~l~-----kp~~~~~l~~~i~~~~~~  118 (121)
T 2pl1_A           84 WQDKVEVLSAGADDYVT-----KPFHIEEVMARMQALMRR  118 (121)
T ss_dssp             HHHHHHHHHTTCSEEEE-----SSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCccceEE-----CCCCHHHHHHHHHHHHHh
Confidence            78888899999998754     445677777777766543

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=90.70  E-value=2.3  Score=31.91  Aligned_cols=136  Identities=15%  Similarity=0.097  Sum_probs=76.5

Q ss_pred             ChHHHHHHHHhCCCCEEEEccc------CCcchHHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554            4 NPLDYVEPLGKAGASGFTFHVE------ISKDNWQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e------~~~~~~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      +-.+.++.+.+.|+|++++-.-      ....- .+.++.+|+.- ....+-+-..+|.+.++.+.+  .++|.|.+..-
T Consensus        18 ~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g-~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~--aGadgv~vh~e   94 (230)
T 1tqj_A           18 RLGEEIKAVDEAGADWIHVDVMDGRFVPNITIG-PLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAK--AGADIISVHVE   94 (230)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBC-HHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHH--HTCSEEEEECS
T ss_pred             HHHHHHHHHHHcCCCEEEEEEEecCCCcchhhh-HHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHH--cCCCEEEECcc
Confidence            3456778888999999988742      11112 48899999864 456644444566445555554  48999977521


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CCHhhHHHHHHcCCCEEEEccc--ccCC----CCHHHHHHHHHH
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCIVAGSS--VFGA----PEPAHVISLMRK  148 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG--I~~~~i~~~~~~Gad~vV~GSa--i~~~----~d~~~~~~~l~~  148 (157)
                      +.    +.  +...+.++++++.  +..+.+.=.  -..+.+..+. .++|.+.++|-  -|..    +...+.++++++
T Consensus        95 ~~----~~--~~~~~~~~~i~~~--g~~~gv~~~p~t~~e~~~~~~-~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~  165 (230)
T 1tqj_A           95 HN----AS--PHLHRTLCQIREL--GKKAGAVLNPSTPLDFLEYVL-PVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQ  165 (230)
T ss_dssp             TT----TC--TTHHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTG-GGCSEEEEESSCC----CCCCGGGHHHHHHHHH
T ss_pred             cc----cc--hhHHHHHHHHHHc--CCcEEEEEeCCCcHHHHHHHH-hcCCEEEEEEeccccCCccCcHHHHHHHHHHHH
Confidence            00    11  1334456666664  455555442  2234455443 49998877763  2322    223466666666


Q ss_pred             HHH
Q 031554          149 SVE  151 (157)
Q Consensus       149 ~~~  151 (157)
                      ...
T Consensus       166 ~~~  168 (230)
T 1tqj_A          166 MCD  168 (230)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A

Probab=90.65  E-value=2.4  Score=27.72  Aligned_cols=99  Identities=12%  Similarity=0.161  Sum_probs=58.6

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEE-EEcC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIE-VDGG  110 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~-vdGG  110 (157)
                      .+.+.+++.|..+- ..  .+..+.+. .++. ..+|.|+ |   |+..       .++.++++++. + +.+|. +.+.
T Consensus        33 ~l~~~L~~~g~~v~-~~--~~~~~al~-~l~~-~~~dlvi-~---~~~~-------g~~~~~~l~~~-~~~~~ii~ls~~   95 (137)
T 2pln_A           33 EIEKGLNVKGFMAD-VT--ESLEDGEY-LMDI-RNYDLVM-V---SDKN-------ALSFVSRIKEK-HSSIVVLVSSDN   95 (137)
T ss_dssp             HHHHHHHHTTCEEE-EE--SCHHHHHH-HHHH-SCCSEEE-E---CSTT-------HHHHHHHHHHH-STTSEEEEEESS
T ss_pred             HHHHHHHHcCcEEE-Ee--CCHHHHHH-HHHc-CCCCEEE-E---cCcc-------HHHHHHHHHhc-CCCccEEEEeCC
Confidence            34445666677543 22  23333333 3332 4688888 3   5533       34556666666 6 66655 4455


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHHHH
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAP-EPAHVISLMRKSVEDA  153 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~~l~~~~~~~  153 (157)
                      -+.+......++|++.++.     +.- ++.+....++..++..
T Consensus        96 ~~~~~~~~~~~~g~~~~l~-----kP~~~~~~l~~~i~~~~~~~  134 (137)
T 2pln_A           96 PTSEEEVHAFEQGADDYIA-----KPYRSIKALVARIEARLRFW  134 (137)
T ss_dssp             CCHHHHHHHHHTTCSEEEE-----SSCSCHHHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHcCCceeee-----CCCCCHHHHHHHHHHHHhhh
Confidence            5678888999999998743     444 6777777777665543

>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A

Probab=90.59  E-value=1.4  Score=36.13  Aligned_cols=87  Identities=11%  Similarity=0.065  Sum_probs=55.3

Q ss_pred             HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE
Q 031554           32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE  106 (157)
Q Consensus        32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~  106 (157)
                      .+.++++|+. |  +.+.+..|-....+....+++.+.  .++++          .|++.+..++-.+++++. .+++|+
T Consensus       214 ~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i----------EqP~~~~d~~~~~~l~~~-~~iPIa  282 (425)
T 3vcn_A          214 PKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWL----------EDSVPAENQAGFRLIRQH-TTTPLA  282 (425)
T ss_dssp             HHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEE----------ECCSCCSSTTHHHHHHHH-CCSCEE
T ss_pred             HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE----------ECCCChhhHHHHHHHHhc-CCCCEE
Confidence            5778888885 4  455556676667665544432102  34444          233333344456666666 378999


Q ss_pred             EEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554          107 VDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus       107 vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                      .|+.+. .+.+.++++.| +|++.+
T Consensus       283 ~dE~~~~~~~~~~~i~~~a~d~v~~  307 (425)
T 3vcn_A          283 VGEIFAHVWDAKQLIEEQLIDYLRA  307 (425)
T ss_dssp             ECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred             eCCCcCCHHHHHHHHHcCCCCeEec
Confidence            999998 78899988876 777743

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=90.57  E-value=5.4  Score=31.57  Aligned_cols=122  Identities=16%  Similarity=0.232  Sum_probs=80.4

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc--c---hHHHHHHHHHHcCCceEEEec----------------CCCCHHhHHhhHhcC
Q 031554            7 DYVEPLGKAGASGFTFHVEISK--D---NWQELVQRIKSKGMRPGVALK----------------PGTSVEEVYPLVEGA   65 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~--~---~~~~~i~~ir~~g~~~gl~l~----------------~~t~~~~~~~~~~~~   65 (157)
                      ..+..+.++|.+.|.+=.-..+  +   ...++++.++.+|+-+=..|.                .-|..+.+.++.+- 
T Consensus        88 e~~~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~-  166 (307)
T 3n9r_A           88 ESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKE-  166 (307)
T ss_dssp             HHHHHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC----------CCSCCHHHHHHHHHH-
T ss_pred             HHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHH-
Confidence            5677888999888877533222  1   115677788888876533331                12677777777754 


Q ss_pred             CCCCeEEEE--eeeCCC----CCcccchhHHHHHHHHHhhCCCCcEEEEc-----------------------CCCHhhH
Q 031554           66 NPVEMVLVM--TVEPGF----GGQKFMPEMMDKVRSLRNRYPSLDIEVDG-----------------------GLGPSTI  116 (157)
Q Consensus        66 ~~~d~vl~m--~v~pG~----~gq~~~~~~~~ki~~l~~~~~~~~I~vdG-----------------------GI~~~~i  116 (157)
                      -++|.+-+-  ++| |.    +....   .+++++++++. ++++++.=|                       |+..+++
T Consensus       167 TgvD~LAvaiGt~H-G~Yk~~~~p~L---d~~~L~~I~~~-~~~PLVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e~i  241 (307)
T 3n9r_A          167 SQVDYLAPAIGTSH-GAFKFKGEPKL---DFERLQEVKRL-TNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFL  241 (307)
T ss_dssp             HCCSEEEECSSCCS-SSBCCSSSCCC---CHHHHHHHHHH-HCSCEEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHH
T ss_pred             HCCCEEEEecCCcc-cccCCCCCCcc---CHHHHHHHHhc-CCCCeEEeCCCCcchHHHHHHHHhcCccCCCCCCCHHHH
Confidence            478987652  333 21    12233   34455555544 468888888                       7889999


Q ss_pred             HHHHHcCCCEEEEccccc
Q 031554          117 AEAASAGANCIVAGSSVF  134 (157)
Q Consensus       117 ~~~~~~Gad~vV~GSai~  134 (157)
                      ++.++.|+.-+=+++.+.
T Consensus       242 ~~ai~~GV~KiNi~Tdl~  259 (307)
T 3n9r_A          242 QESVKGGINKVNTDTDLR  259 (307)
T ss_dssp             HHHHHTTEEEEEECHHHH
T ss_pred             HHHHHcCceEEEechHHH
Confidence            999999999999998653

>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1

Probab=90.46  E-value=2.5  Score=27.51  Aligned_cols=101  Identities=12%  Similarity=0.127  Sum_probs=59.9

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~  112 (157)
                      +-..+...|..+.. .  .+..+.+..+.+  ..+|.|++-...|+..|       ++-++++++..+..+|. +.+.-+
T Consensus        19 l~~~L~~~g~~v~~-~--~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g-------~~~~~~l~~~~~~~~ii~~s~~~~   86 (136)
T 1mvo_A           19 LQYNLERSGYDVIT-A--SDGEEALKKAET--EKPDLIVLDVMLPKLDG-------IEVCKQLRQQKLMFPILMLTAKDE   86 (136)
T ss_dssp             HHHHHHHTTCEEEE-E--SSHHHHHHHHHH--HCCSEEEEESSCSSSCH-------HHHHHHHHHTTCCCCEEEEECTTC
T ss_pred             HHHHHHHCCcEEEE-e--cCHHHHHHHHhh--cCCCEEEEecCCCCCCH-------HHHHHHHHcCCCCCCEEEEECCCC
Confidence            33445566776542 2  233333333322  35788877544565433       45566777765666654 455555


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      .+......++|++.++     .+.-++.+....++..++
T Consensus        87 ~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~~~  120 (136)
T 1mvo_A           87 EFDKVLGLELGADDYM-----TKPFSPREVNARVKAILR  120 (136)
T ss_dssp             CCCHHHHHHTTCCEEE-----ESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEE-----ECCCCHHHHHHHHHHHHH
Confidence            6777888899999874     444566766666766654

>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}

Probab=90.43  E-value=1.2  Score=36.49  Aligned_cols=115  Identities=13%  Similarity=0.085  Sum_probs=73.0

Q ss_pred             cChHHHHHH---HHhCCCCEEEEcccCC--------------cchHHHHHHHHHHc-CC--ceEEEecCCCCHHhHHhhH
Q 031554            3 TNPLDYVEP---LGKAGASGFTFHVEIS--------------KDNWQELVQRIKSK-GM--RPGVALKPGTSVEEVYPLV   62 (157)
Q Consensus         3 ~~p~~~i~~---~~~~gad~v~vh~e~~--------------~~~~~~~i~~ir~~-g~--~~gl~l~~~t~~~~~~~~~   62 (157)
                      .+|+.+.+.   +.+.|...+-+..-..              +.. .+.++++|+. |-  .+.+..|-....+...+++
T Consensus       143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d-~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~  221 (412)
T 4e4u_A          143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRC-ELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLA  221 (412)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHH-HHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHH
Confidence            367776654   4567999999975321              223 5677778775 54  4555556666666554443


Q ss_pred             hcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           63 EGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        63 ~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                      +.+.  .++++          .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus       222 ~~L~~~~i~~i----------EeP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~  281 (412)
T 4e4u_A          222 KRLEKYDPLWF----------EEPVPPGQEEAIAQVAKHT-SIPIATGERLTTKYEFHKLLQAGGASILQL  281 (412)
T ss_dssp             HHHGGGCCSEE----------ECCSCSSCHHHHHHHHHTC-SSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred             HHhhhcCCcEE----------ECCCChhhHHHHHHHHhhC-CCCEEecCccCCHHHHHHHHHcCCCCEEEe
Confidence            2102  34444          2444445566677777763 79999999998 58888888876 787744

>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5

Probab=90.40  E-value=2.2  Score=34.19  Aligned_cols=138  Identities=15%  Similarity=0.157  Sum_probs=78.7

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--------------C--------------------CceEEEecCCC
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--------------G--------------------MRPGVALKPGT   53 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--------------g--------------------~~~gl~l~~~t   53 (157)
                      .++.+.++|++.|.++.-...+.+.++.+.++..              |                    ..+++.|....
T Consensus       109 di~~~LdaGa~gImlP~V~saee~~~~~~~~~~~p~g~Rg~~~~a~~~G~~~~~~~~~~~~y~~~a~~~i~vi~mIEt~~  188 (339)
T 1izc_A          109 SLSTALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNHVCIIPQIESVK  188 (339)
T ss_dssp             HHHHHHHHTCSEEEETTCCCHHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHHHHCEEEEEECSHH
T ss_pred             HHHHHHhCCCCEEEeCCCCCHHHHHHHHHHhccCccCcccccchhhcccccccccccchhhhhhhcCcCceEEEEEChHH
Confidence            5777888999999998543333325566666431              1                    23555664333


Q ss_pred             CHHhHHhhHhcCCCCCeEEEEee----e--------CCCCCcccchhHHHHHHHH---HhhCCCCcEEEEcCCCHhhHHH
Q 031554           54 SVEEVYPLVEGANPVEMVLVMTV----E--------PGFGGQKFMPEMMDKVRSL---RNRYPSLDIEVDGGLGPSTIAE  118 (157)
Q Consensus        54 ~~~~~~~~~~~~~~~d~vl~m~v----~--------pG~~gq~~~~~~~~ki~~l---~~~~~~~~I~vdGGI~~~~i~~  118 (157)
                      -++.+.+++.. +.+|.+.+.+-    .        -|..+   .|..+.-++++   .+. .++++. .-.-+++.+..
T Consensus       189 av~nldeIaa~-~~vD~l~iG~~DLs~~~~~~~~~~lG~~~---~p~v~~a~~~iv~aara-aGk~~g-~~~~d~~~a~~  262 (339)
T 1izc_A          189 GVENVDAIAAM-PEIHGLMFGPGDYMIDAGLDLNGALSGVP---HPTFVEAMTKFSTAAQR-NGVPIF-GGALSVDMVPS  262 (339)
T ss_dssp             HHHTHHHHHTC-TTCCCEEECHHHHHHHTTCCTTCCTTSCC---CHHHHHHHHHHHHHHHH-TTCCEE-EECSSGGGHHH
T ss_pred             HHHHHHHHhcC-CCCCEEEECHHHHHhhhhcccchhhCCCC---CHHHHHHHHHHHHHHHH-hCCcee-EecCCHHHHHH
Confidence            44567777744 57999988642    2        12222   34433333333   222 244431 11234688899


Q ss_pred             HHHcCCCEEEEcccccCC-CCHHHHHHHHHHHHH
Q 031554          119 AASAGANCIVAGSSVFGA-PEPAHVISLMRKSVE  151 (157)
Q Consensus       119 ~~~~Gad~vV~GSai~~~-~d~~~~~~~l~~~~~  151 (157)
                      ++..|.+.+++++.+..- .-..+.+.+++++++
T Consensus       263 ~~~~Gf~~l~~~~di~~l~~~~~~~v~~a~~iv~  296 (339)
T 1izc_A          263 LIEQGYRAIAVQFDVWGLSRLVHGSLAQARASAK  296 (339)
T ss_dssp             HHHTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHhCCCEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998743211 122556666666654

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}

Probab=90.36  E-value=4.1  Score=32.75  Aligned_cols=118  Identities=11%  Similarity=0.095  Sum_probs=74.7

Q ss_pred             cChHHHHH---HHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            3 TNPLDYVE---PLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         3 ~~p~~~i~---~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      .+|+...+   .+.+.|.+.+=+..-.. +.. .+.++++|+. |  +.+.+..|-..+.+...++++.+...+. .+  
T Consensus       144 ~~~e~~~~~a~~~~~~G~~~iKiK~G~~~~~d-~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~i--  219 (378)
T 3eez_A          144 KSVEETRAVIDRYRQRGYVAHSVKIGGDVERD-IARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV-MF--  219 (378)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCSCHHHH-HHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC-CE--
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEeccCCCHHHH-HHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe-EE--
Confidence            35666554   45668999999886532 123 5677778875 3  4556666777777665555532133332 21  


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcccc
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSV  133 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai  133 (157)
                            .|++.  .++-++++++. .+++|+.|+.+. .+.+.++++.| +|++.+.-.-
T Consensus       220 ------EqP~~--~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~  270 (378)
T 3eez_A          220 ------EQPGE--TLDDIAAIRPL-HSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNR  270 (378)
T ss_dssp             ------ECCSS--SHHHHHHTGGG-CCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHH
T ss_pred             ------ecCCC--CHHHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchh
Confidence                  23332  34556777766 378999999988 68888887766 7988776433

>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A

Probab=90.33  E-value=5.1  Score=32.27  Aligned_cols=115  Identities=16%  Similarity=0.185  Sum_probs=74.2

Q ss_pred             ChHHHH---HHHHhCCCCEEEEcccCC--cchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHh-c-CCCCCeEEEE
Q 031554            4 NPLDYV---EPLGKAGASGFTFHVEIS--KDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVE-G-ANPVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i---~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl~m   74 (157)
                      +|+..+   +.+.+.|...+=+..-..  +.. .+.++++|+.  ++...+..|-..+.+...++++ + -..+++|   
T Consensus       148 ~~~~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d-~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~~i---  223 (385)
T 3i6e_A          148 DFDADIALMERLRADGVGLIKLKTGFRDHAFD-IMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFI---  223 (385)
T ss_dssp             SHHHHHHHHHHHHHHTCCEEEEECSSSCHHHH-HHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCCSCE---
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHH-HHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE---
Confidence            454443   344567999998886432  233 5677778875  6667777777777665444432 1 0234444   


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                             .|++.+..++-++++++. .+++|+.|..+. ...+.++++.| +|++.+-
T Consensus       224 -------EqP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k  273 (385)
T 3i6e_A          224 -------EQPVRAHHFELMARLRGL-TDVPLLADESVYGPEDMVRAAHEGICDGVSIK  273 (385)
T ss_dssp             -------ECCSCTTCHHHHHHHHTT-CSSCEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             -------ECCCCcccHHHHHHHHHh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEec
Confidence                   355555567777777776 368999999987 67888877655 7887553

>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*

Probab=90.33  E-value=3.2  Score=32.98  Aligned_cols=122  Identities=12%  Similarity=0.156  Sum_probs=74.7

Q ss_pred             HHHHHHhCCCCEEEEcccCCcch---HHHHHHHHHH----cC------CceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554            8 YVEPLGKAGASGFTFHVEISKDN---WQELVQRIKS----KG------MRPGVALKPGTSVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~---~~~~i~~ir~----~g------~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      .+..+.+.|++.|.++.-...+.   +.+.++.++.    .|      ..+|+.|....-+..+.++.   ..+|.+.+.
T Consensus       127 Ai~ra~~~G~~~ImvPmV~s~~E~~~a~~~v~~~~~~~r~~G~~~~~~~~vg~mIEtp~av~~~d~Ia---~~vD~~siG  203 (324)
T 2xz9_A          127 AILRASAYGNVQIMYPMISSVEEVRKANSILEEVKAELDREGVKYDKEIKVGIMVEIPSAAVTADILA---KEVDFFSIG  203 (324)
T ss_dssp             HHHHHGGGSCEEEEECSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCTTCEEEEEECSHHHHHTHHHHT---TTCSEEEEC
T ss_pred             HHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHH---HhCcEEEEC
Confidence            34445556999999985443332   1444544443    23      55778884333345677887   679999876


Q ss_pred             eeeC-----C---------CCCcccchhHHHHHHHHHhh--CCCCcEEEEcCC--CHhhHHHHHHcCCCEEEEccc
Q 031554           75 TVEP-----G---------FGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGL--GPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        75 ~v~p-----G---------~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI--~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      +-+-     |         ..++.+.|..+.-++++.+.  ..++++.+=|.+  +++.++.+...|.|.+.++..
T Consensus       204 tnDLtq~~lg~dR~~~~~~~~~~~~~p~v~~ai~~vv~aar~aG~~vgvcge~~~dp~~~~~l~~lG~~~~si~p~  279 (324)
T 2xz9_A          204 TNDLTQYTLAVDRMNEHVKEYYQPFHPAILRLVKMVIDAAHKEGKFAAMCGEMAGDPLAAVILLGLGLDEFSMSAT  279 (324)
T ss_dssp             HHHHHHHHTTCCTTCGGGGGGCCTTCHHHHHHHHHHHHHHHHTTCEEEECSGGGGCHHHHHHHHHHTCCEEEECGG
T ss_pred             HHHHHHHHhCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHCCceeecCccCCCHHHHHHHHHCCCCEEEEChh
Confidence            4211     1         12355566666555555332  136677664443  678889999999999988864

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=90.31  E-value=1  Score=29.13  Aligned_cols=103  Identities=9%  Similarity=0.053  Sum_probs=58.3

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEE-Ec
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEV-DG  109 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~v-dG  109 (157)
                      .+-+.+++.|..+..+   .+..+.+..+. . ..+|.|++-.-.|+..       .++-++++++.  .++.+|.+ .+
T Consensus        18 ~l~~~L~~~g~~v~~~---~~~~~a~~~l~-~-~~~dlii~D~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~s~   85 (127)
T 3i42_A           18 TFKELLEMLGFQADYV---MSGTDALHAMS-T-RGYDAVFIDLNLPDTS-------GLALVKQLRALPMEKTSKFVAVSG   85 (127)
T ss_dssp             HHHHHHHHTTEEEEEE---SSHHHHHHHHH-H-SCCSEEEEESBCSSSB-------HHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred             HHHHHHHHcCCCEEEE---CCHHHHHHHHH-h-cCCCEEEEeCCCCCCC-------HHHHHHHHHhhhccCCCCEEEEEC
Confidence            3444566667644332   23333333333 2 4688888765556533       45667777776  56666554 44


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      .-+.+. ......|++.+     +.+.-++.+..+.++......
T Consensus        86 ~~~~~~-~~~~~~g~~~~-----l~KP~~~~~L~~~i~~~~~~~  123 (127)
T 3i42_A           86 FAKNDL-GKEACELFDFY-----LEKPIDIASLEPILQSIEGHH  123 (127)
T ss_dssp             C-CTTC-CHHHHHHCSEE-----EESSCCHHHHHHHHHHHC---
T ss_pred             CcchhH-HHHHHHhhHHh-----eeCCCCHHHHHHHHHHhhccC
Confidence            445555 66778898875     555557777666666655443

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=90.30  E-value=5.4  Score=31.20  Aligned_cols=110  Identities=11%  Similarity=0.152  Sum_probs=63.9

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc---CCceEEEecC---CCCH-HhHHhhHhcCCCCCeEEEE
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK---GMRPGVALKP---GTSV-EEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~---g~~~gl~l~~---~t~~-~~~~~~~~~~~~~d~vl~m   74 (157)
                      .+|. ++..+.++|+-.+....... .+.+.+.++.+|+.   -..+++.+++   ..+. +.++.+.+  .++|.|.+.
T Consensus        27 s~~~-la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~--~g~d~V~~~  103 (328)
T 2gjl_A           27 GRAE-MAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIE--AGIRVVETA  103 (328)
T ss_dssp             CSHH-HHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHH--TTCCEEEEE
T ss_pred             CcHH-HHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHh--cCCCEEEEc
Confidence            3444 67788889975555432211 22225667777764   2445667763   1233 44555554  589998764


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                      .-.|        +   +.++.+++.  ++++.++ =-+.+.+..+.++|+|.|++
T Consensus       104 ~g~p--------~---~~~~~l~~~--gi~vi~~-v~t~~~a~~~~~~GaD~i~v  144 (328)
T 2gjl_A          104 GNDP--------G---EHIAEFRRH--GVKVIHK-CTAVRHALKAERLGVDAVSI  144 (328)
T ss_dssp             ESCC--------H---HHHHHHHHT--TCEEEEE-ESSHHHHHHHHHTTCSEEEE
T ss_pred             CCCc--------H---HHHHHHHHc--CCCEEee-CCCHHHHHHHHHcCCCEEEE
Confidence            2111        2   334455554  4555543 12468888889999999998

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=90.30  E-value=3.2  Score=33.82  Aligned_cols=119  Identities=13%  Similarity=0.039  Sum_probs=71.3

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH----HhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV----YPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~----~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      -++.+.+. +|++-+......+  ...++++.+.|+-+++.-.....++.+    +.+.+. ..-+++++-+-.-.|...
T Consensus       218 ~~~~l~~~-vd~lkIgs~~~~n--~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~-Gn~~i~L~~rG~s~yp~~  293 (385)
T 3nvt_A          218 DIEVALDY-VDVIQIGARNMQN--FELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQ-GNGKIILCERGIRTYEKA  293 (385)
T ss_dssp             GHHHHTTT-CSEEEECGGGTTC--HHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTT-TCCCEEEEECCBCCSCCS
T ss_pred             HHHHHHhh-CCEEEECcccccC--HHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHc-CCCeEEEEECCCCCCCCC
Confidence            34555666 8999998776555  488999999999888887663333332    333221 344666655311122221


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEE----cCCCH---hhHHHHHHcCCCEEEEcc
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVD----GGLGP---STIAEAASAGANCIVAGS  131 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vd----GGI~~---~~i~~~~~~Gad~vV~GS  131 (157)
                      ....-.+.-+..+++.. +++|.+|    +|-+.   .-....+.+|||++++=.
T Consensus       294 ~~~~ldl~~i~~lk~~~-~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~  347 (385)
T 3nvt_A          294 TRNTLDISAVPILKKET-HLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEV  347 (385)
T ss_dssp             SSSBCCTTHHHHHHHHB-SSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEB
T ss_pred             CccccCHHHHHHHHHhc-CCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEe
Confidence            12222444566677763 7888898    34332   223446789999999875

>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}

Probab=90.28  E-value=3  Score=28.13  Aligned_cols=104  Identities=11%  Similarity=0.187  Sum_probs=64.3

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcE-EEE
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDI-EVD  108 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I-~vd  108 (157)
                      ..+-+.+++.|..+..+    ++.+.+...++. ..+|.|++-...|+..|       ++-++++++.  .++++| .+.
T Consensus        21 ~~l~~~L~~~g~~v~~~----~~~~~al~~l~~-~~~dlii~D~~l~~~~g-------~~~~~~lr~~~~~~~~pii~~s   88 (154)
T 3gt7_A           21 EHLKHILEETGYQTEHV----RNGREAVRFLSL-TRPDLIISDVLMPEMDG-------YALCRWLKGQPDLRTIPVILLT   88 (154)
T ss_dssp             HHHHHHHHTTTCEEEEE----SSHHHHHHHHTT-CCCSEEEEESCCSSSCH-------HHHHHHHHHSTTTTTSCEEEEE
T ss_pred             HHHHHHHHHCCCEEEEe----CCHHHHHHHHHh-CCCCEEEEeCCCCCCCH-------HHHHHHHHhCCCcCCCCEEEEE
Confidence            34445566668765333    233333334432 46888877555565443       4556666664  256654 455


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +.-+.+....+.++||+.+     +.+.-++.+....+++.++.
T Consensus        89 ~~~~~~~~~~~~~~g~~~~-----l~KP~~~~~l~~~i~~~l~~  127 (154)
T 3gt7_A           89 ILSDPRDVVRSLECGADDF-----ITKPCKDVVLASHVKRLLSG  127 (154)
T ss_dssp             CCCSHHHHHHHHHHCCSEE-----EESSCCHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHCCCCEE-----EeCCCCHHHHHHHHHHHHHH
Confidence            6667888889999999987     44555777777778777664

>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1

Probab=90.28  E-value=2.7  Score=27.63  Aligned_cols=76  Identities=9%  Similarity=0.089  Sum_probs=49.1

Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcE-EEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDI-EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I-~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      .+|.|++-...|+..       .++-++++++..  ++.+| .+.+.-+.+......++|++.++     .+.-++.+..
T Consensus        62 ~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~  129 (149)
T 1k66_A           62 RPAVILLDLNLPGTD-------GREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYI-----VKPLEIDRLT  129 (149)
T ss_dssp             CCSEEEECSCCSSSC-------HHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEE-----ECCSSHHHHH
T ss_pred             CCcEEEEECCCCCCC-------HHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEE-----eCCCCHHHHH
Confidence            468777644445432       355667777654  45554 45555667888889999999874     3444677777


Q ss_pred             HHHHHHHHHHh
Q 031554          144 SLMRKSVEDAQ  154 (157)
Q Consensus       144 ~~l~~~~~~~~  154 (157)
                      ..+++.++...
T Consensus       130 ~~i~~~~~~~~  140 (149)
T 1k66_A          130 ETVQTFIKYWL  140 (149)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            77777666543

>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}

Probab=90.21  E-value=3.5  Score=34.49  Aligned_cols=142  Identities=14%  Similarity=0.177  Sum_probs=86.6

Q ss_pred             HHH--HHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-C
Q 031554            8 YVE--PLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-G   82 (157)
Q Consensus         8 ~i~--~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-g   82 (157)
                      .++  ...+.|+|+|.+..--..+.+.++-+.+.++|..+.+.  |....-++.+.+++   ...|.|++---+-|.. +
T Consensus       186 dl~~~~~~~~~vD~Ia~SfVr~a~Dv~~~r~~l~~~g~~~~iiaKIE~~eav~nldeIl---~~sDgImVaRGDLgvei~  262 (461)
T 3qtg_A          186 ALKAISPIRDNIDYVAISLAKSCKDVDSVRSLLTELGFQSQVAVKIETKGAVNNLEELV---QCSDYVVVARGDLGLHYG  262 (461)
T ss_dssp             HHHHHGGGGGGCCEEEECSCCSHHHHHHHHHHHHHTTCCCEEEEEECSHHHHHTHHHHH---HTCSEEEEEHHHHTTTSC
T ss_pred             HHHHHHHhhcCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHH---HhcccEEEccccccccCC
Confidence            445  56788999999996544444467777788888777665  43334556788888   6689998752222211 1


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEc----------CCCHhh---HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDG----------GLGPST---IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdG----------GI~~~~---i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      ....+...+++-+.++.. +.++.+.-          --|...   +...+--|+|++.+..-=-.-+-|.++++.+.++
T Consensus       263 ~e~v~~~Qk~ii~~~~~~-gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAV~dGaDavMLSgETA~G~yPveaV~~m~~I  341 (461)
T 3qtg_A          263 LDALPIVQRRIVHTSLKY-GKPIAVATQLLDSMQSSPIPTRAEINDVFTTASMGVDSLWLTNETASGKYPLAAVSWLSRI  341 (461)
T ss_dssp             TTTHHHHHHHHHHHHHHT-TCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh-CCCEEEeccchHhhccCCCccHHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHHHHHHH
Confidence            112334444444433332 45555531          123232   3444667999998874333346889999999998


Q ss_pred             HHHH
Q 031554          150 VEDA  153 (157)
Q Consensus       150 ~~~~  153 (157)
                      .+.+
T Consensus       342 ~~~a  345 (461)
T 3qtg_A          342 LMNV  345 (461)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8753

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=90.20  E-value=3.2  Score=28.36  Aligned_cols=99  Identities=18%  Similarity=0.249  Sum_probs=62.7

Q ss_pred             HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCc-EEEEcCCC
Q 031554           36 QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLD-IEVDGGLG  112 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~-I~vdGGI~  112 (157)
                      +.+++.|.......  .+..+.++.+.+  ..+|.|++--..||-+|       ++-++++|+.  .++++ |.+.+--+
T Consensus        30 ~~L~~~G~~~v~~a--~~g~~al~~~~~--~~~DlillD~~MP~mdG-------~el~~~ir~~~~~~~ipvI~lTa~~~   98 (134)
T 3to5_A           30 NLLRDLGFNNTQEA--DDGLTALPMLKK--GDFDFVVTDWNMPGMQG-------IDLLKNIRADEELKHLPVLMITAEAK   98 (134)
T ss_dssp             HHHHHTTCCCEEEE--SSHHHHHHHHHH--HCCSEEEEESCCSSSCH-------HHHHHHHHHSTTTTTCCEEEEESSCC
T ss_pred             HHHHHcCCcEEEEE--CCHHHHHHHHHh--CCCCEEEEcCCCCCCCH-------HHHHHHHHhCCCCCCCeEEEEECCCC
Confidence            34566787632222  233444443332  46899988777798666       4455666653  34555 55677777


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      .++..+..++|||.+     +.+.=++.+....+++.+
T Consensus        99 ~~~~~~~~~~Ga~~y-----l~KP~~~~~L~~~i~~~l  131 (134)
T 3to5_A           99 REQIIEAAQAGVNGY-----IVKPFTAATLKEKLDKIF  131 (134)
T ss_dssp             HHHHHHHHHTTCCEE-----EESSCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHH
Confidence            899999999999987     455557777666666554

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=90.12  E-value=4.8  Score=30.28  Aligned_cols=134  Identities=11%  Similarity=0.073  Sum_probs=78.5

Q ss_pred             hHHHHHHHHhCCCCEEEEcccC------CcchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554            5 PLDYVEPLGKAGASGFTFHVEI------SKDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE   77 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~------~~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~   77 (157)
                      -.+.++.+ +.|+|++++-.-.      ...- ...++.+|++ ...+-+-+...+|...++.+.+  .++|+|.+.   
T Consensus        15 l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G-~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~--aGAd~itvh---   87 (231)
T 3ctl_A           15 FKEQIEFI-DSHADYFHIDIMDGHFVPNLTLS-PFFVSQVKKLATKPLDCHLMVTRPQDYIAQLAR--AGADFITLH---   87 (231)
T ss_dssp             HHHHHHHH-HTTCSCEEEEEECSSSSSCCCBC-HHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHH--HTCSEEEEC---
T ss_pred             HHHHHHHH-HcCCCEEEEEEEeCccCccchhc-HHHHHHHHhccCCcEEEEEEecCHHHHHHHHHH--cCCCEEEEC---
Confidence            34567777 9999998776211      1112 4799999987 4545555555666666777765  489999774   


Q ss_pred             CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC--CHhhHHHHHHcCCCEEEEccc--ccCC----CCHHHHHHHHHHH
Q 031554           78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL--GPSTIAEAASAGANCIVAGSS--VFGA----PEPAHVISLMRKS  149 (157)
Q Consensus        78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI--~~~~i~~~~~~Gad~vV~GSa--i~~~----~d~~~~~~~l~~~  149 (157)
                      +..-.    +...+-++.+|+.  ++.+.++=..  ..+.+..+.+ ++|.+.+-|-  -|..    ++..+.++++++.
T Consensus        88 ~Ea~~----~~~~~~i~~i~~~--G~k~gv~lnp~tp~~~~~~~l~-~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~  160 (231)
T 3ctl_A           88 PETIN----GQAFRLIDEIRRH--DMKVGLILNPETPVEAMKYYIH-KADKITVMTVDPGFAGQPFIPEMLDKLAELKAW  160 (231)
T ss_dssp             GGGCT----TTHHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTGG-GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHH
T ss_pred             cccCC----ccHHHHHHHHHHc--CCeEEEEEECCCcHHHHHHHHh-cCCEEEEeeeccCcCCccccHHHHHHHHHHHHH
Confidence            21101    1233446666665  4555554332  2456666554 8998865432  2322    3556777777776


Q ss_pred             HHH
Q 031554          150 VED  152 (157)
Q Consensus       150 ~~~  152 (157)
                      +++
T Consensus       161 ~~~  163 (231)
T 3ctl_A          161 RER  163 (231)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            653

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=90.09  E-value=3  Score=27.87  Aligned_cols=105  Identities=10%  Similarity=0.124  Sum_probs=62.7

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI  111 (157)
                      .+.+.+.+.|...-+.. ..+..+.++.+.+  ..+|.|++-...|+..       .++-++++++..++.+|. +.+.-
T Consensus        30 ~l~~~L~~~~~~~~v~~-~~~~~~a~~~l~~--~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~   99 (152)
T 3eul_A           30 GVVRALSLSGSVNVVGE-ADDGAAALELIKA--HLPDVALLDYRMPGMD-------GAQVAAAVRSYELPTRVLLISAHD   99 (152)
T ss_dssp             HHHHHHHHHSSEEEEEE-ESSHHHHHHHHHH--HCCSEEEEETTCSSSC-------HHHHHHHHHHTTCSCEEEEEESCC
T ss_pred             HHHHHHhhCCCeEEEEE-eCCHHHHHHHHHh--cCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCeEEEEEccC
Confidence            34445566664322211 1233333333332  4688887754445433       456677777777777655 45556


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +.+.+..+.++||+.++.     +.-++.+....+++.++.
T Consensus       100 ~~~~~~~~~~~g~~~~l~-----Kp~~~~~l~~~i~~~~~~  135 (152)
T 3eul_A          100 EPAIVYQALQQGAAGFLL-----KDSTRTEIVKAVLDCAKG  135 (152)
T ss_dssp             CHHHHHHHHHTTCSEEEE-----TTCCHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHcCCCEEEe-----cCCCHHHHHHHHHHHHcC
Confidence            678888899999998744     445677777777766653

>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}

Probab=90.08  E-value=2.7  Score=27.42  Aligned_cols=74  Identities=12%  Similarity=0.218  Sum_probs=49.1

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd-GGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~  144 (157)
                      ..+|.|++-...|+..|       ++-++++++..++.+|.+- +--+.+.+.+..++||+.++     .+.-++.+...
T Consensus        48 ~~~dlvilD~~lp~~~g-------~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l-----~Kp~~~~~L~~  115 (133)
T 3b2n_A           48 YNPNVVILDIEMPGMTG-------LEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYV-----LKERSIEELVE  115 (133)
T ss_dssp             HCCSEEEECSSCSSSCH-------HHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEE-----ETTSCHHHHHH
T ss_pred             cCCCEEEEecCCCCCCH-------HHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-----ECCCCHHHHHH
Confidence            35788877544565433       4556677776677776554 44557788888999999874     44456777666


Q ss_pred             HHHHHHH
Q 031554          145 LMRKSVE  151 (157)
Q Consensus       145 ~l~~~~~  151 (157)
                      .+++.++
T Consensus       116 ~i~~~~~  122 (133)
T 3b2n_A          116 TINKVNN  122 (133)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHc
Confidence            6766554

>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}

Probab=90.04  E-value=0.88  Score=30.05  Aligned_cols=106  Identities=10%  Similarity=0.030  Sum_probs=61.5

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEEE-E
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIEV-D  108 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I~v-d  108 (157)
                      ..+.+.+++.|..+.. .  .+..+.+..+. . ..+|.|++-...|+..       .++-++++++  ..++.+|.+ .
T Consensus        21 ~~l~~~L~~~g~~v~~-~--~~~~~a~~~l~-~-~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~pii~~s   88 (142)
T 3cg4_A           21 IAVKTILSDAGFHIIS-A--DSGGQCIDLLK-K-GFSGVVLLDIMMPGMD-------GWDTIRAILDNSLEQGIAIVMLT   88 (142)
T ss_dssp             HHHHHHHHHTTCEEEE-E--SSHHHHHHHHH-T-CCCEEEEEESCCSSSC-------HHHHHHHHHHTTCCTTEEEEEEE
T ss_pred             HHHHHHHHHCCeEEEE-e--CCHHHHHHHHH-h-cCCCEEEEeCCCCCCC-------HHHHHHHHHhhcccCCCCEEEEE
Confidence            3444556666775432 2  23333344333 2 4577777644445432       3556777777  556666554 4


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +.-+.+......++|++.++     .+.-++.+....+++.++..+
T Consensus        89 ~~~~~~~~~~~~~~g~~~~l-----~kp~~~~~l~~~i~~~~~~~~  129 (142)
T 3cg4_A           89 AKNAPDAKMIGLQEYVVDYI-----TKPFDNEDLIEKTTFFMGFVR  129 (142)
T ss_dssp             CTTCCCCSSTTGGGGEEEEE-----ESSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhcCccEEE-----eCCCCHHHHHHHHHHHHHHHh
Confidence            44456677777888988764     344467777777777766544

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=89.96  E-value=2  Score=32.51  Aligned_cols=113  Identities=14%  Similarity=0.120  Sum_probs=64.2

Q ss_pred             HHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHc----CCceEEEecCCCCHHhHHhhHhc--CCCCCeEEEEe
Q 031554            8 YVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSK----GMRPGVALKPGTSVEEVYPLVEG--ANPVEMVLVMT   75 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~----g~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl~m~   75 (157)
                      -++. .+.|||-|-++....      .+.+.+-++.+++.    ++++.+...--| .+.+....++  -.++|+|=   
T Consensus        72 E~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt-~eei~~a~~ia~eaGADfVK---  146 (226)
T 1vcv_A           72 LVSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLR-DEERYTLYDIIAEAGAHFIK---  146 (226)
T ss_dssp             HHHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCC-HHHHHHHHHHHHHHTCSEEE---
T ss_pred             HHHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCC-HHHHHHHHHHHHHcCCCEEE---
Confidence            3566 889999999886322      12224555555553    233333322123 2323222221  14899994   


Q ss_pred             eeCCCC----------CcccchhHHHHHHHH-HhhCCCCcEEEEcCCC-HhhHHHHHHc---CCC
Q 031554           76 VEPGFG----------GQKFMPEMMDKVRSL-RNRYPSLDIEVDGGLG-PSTIAEAASA---GAN  125 (157)
Q Consensus        76 v~pG~~----------gq~~~~~~~~ki~~l-~~~~~~~~I~vdGGI~-~~~i~~~~~~---Gad  125 (157)
                      ...||.          ...-..+..+.+++. +...+++.|-+.|||+ .+++..++++   ||+
T Consensus       147 TSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~  211 (226)
T 1vcv_A          147 SSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGED  211 (226)
T ss_dssp             CCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSC
T ss_pred             eCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence            345665          211122333333333 2234678999999999 7999999999   999

>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A

Probab=89.89  E-value=2.7  Score=36.11  Aligned_cols=121  Identities=13%  Similarity=0.137  Sum_probs=76.2

Q ss_pred             HHHHHhCCCCEEEEcccCCcch---HHHHHHHHHH----cC------CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            9 VEPLGKAGASGFTFHVEISKDN---WQELVQRIKS----KG------MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~~---~~~~i~~ir~----~g------~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      +-.+...|+..|.|+.-...+-   ..+.++.++.    .|      ..+|+.+...--+..+.++.   ..+|++.+.+
T Consensus       377 i~rA~~~G~~~Im~PmV~t~~E~~~a~~~v~~~~~~l~~~G~~~~~~~~vg~MIE~P~a~~~ad~ia---~~vDf~siGt  453 (575)
T 2hwg_A          377 ILRASAFGKLRIMFPMIISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLA---KEVDFFSIGT  453 (575)
T ss_dssp             HHHHTTSSCEEEEESSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEECSHHHHHTHHHHH---TTCSEEEECH
T ss_pred             HHHHHhcCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHH---HhCCEEEECH
Confidence            3344556988898885543332   1344444333    34      55788883333345678888   7899998864


Q ss_pred             ee--------------CCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCC--CHhhHHHHHHcCCCEEEEccc
Q 031554           76 VE--------------PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGL--GPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        76 v~--------------pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI--~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      -+              -|...+++.|..++-++.+.+.  ..++++.+=|..  ++..++.+...|.|.+.++..
T Consensus       454 NDLtqy~la~dR~~~~l~~~~dp~~paVl~li~~vv~aa~~~g~~vgvCGe~agdp~~~~~l~~lG~~~~S~~p~  528 (575)
T 2hwg_A          454 NDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAI  528 (575)
T ss_dssp             HHHHHHHHTCCTTCGGGGGGCCSSSHHHHHHHHHHHHHHHHTTCEEEECSTTTTCTTTHHHHHHTTCCEEEECGG
T ss_pred             HHHHHHHhCcCCCccccccccCCCCHHHHHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHCCCCEEEECcc
Confidence            21              1223566777777766666432  136777774433  688999999999999988864

>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}

Probab=89.77  E-value=7.6  Score=33.42  Aligned_cols=140  Identities=9%  Similarity=0.074  Sum_probs=83.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEe----eeCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMT----VEPG   79 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~----v~pG   79 (157)
                      ..+....+.|+|+|.+..--..+.+.+..+.++++|. .+.+.  |....-++.+.+++   ...|.|++--    ++-|
T Consensus       177 ~di~~~l~~g~d~v~~sfV~~a~dv~~~~~~l~~~~~~~~~iiakIE~~eav~nldeIl---~~~DgImVargDLgvei~  253 (587)
T 2e28_A          177 ADILFGIRQGIDFIAASFVRRASDVLEIRELLEAHDALHIQIIAKIENEEGVANIDEIL---EAADGLMVARGDLGVEIP  253 (587)
T ss_dssp             HHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHHTTCTTSEEEEEECSHHHHHTHHHHH---HHSSEEEEEHHHHHHHSC
T ss_pred             HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHH---HhCCEEEEcCchhhhhcC
Confidence            3567889999999999965444444777788888875 55554  43334456688888   5579998741    2222


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcC----------CCHhhHHHHHH---cCCCEEEEcccccCCCCHHHHHHHH
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG----------LGPSTIAEAAS---AGANCIVAGSSVFGAPEPAHVISLM  146 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG----------I~~~~i~~~~~---~Gad~vV~GSai~~~~d~~~~~~~l  146 (157)
                      .   ...+...+++-+..+. .+.++.++-=          -|...+..+..   -|+|++-+..-=-.-.-|.++++.|
T Consensus       254 ~---~~v~~~qk~ii~~~~~-~gkpvi~ATQmLeSMi~~p~PTRAE~sDvanav~dG~DavMLSgETA~G~yPveaV~~m  329 (587)
T 2e28_A          254 A---EEVPLIQKLLIKKSNM-LGKPVITATQMLDSMQRNPRPTRAEASDVANAIFDGTDAVMLSGETAAGQYPVEAVKTM  329 (587)
T ss_dssp             G---GGHHHHHHHHHHHHHH-HTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHHH-cCCCeEEechhhHhhccCCCccHHHHhccchhhhhCcceeeecccccCCCCHHHHHHHH
Confidence            1   2223344443333322 1445544321          23334444433   4999998863222235788999988


Q ss_pred             HHHHHHH
Q 031554          147 RKSVEDA  153 (157)
Q Consensus       147 ~~~~~~~  153 (157)
                      .++.+.+
T Consensus       330 ~~I~~~~  336 (587)
T 2e28_A          330 HQIALRT  336 (587)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877654

>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}

Probab=89.68  E-value=7  Score=31.56  Aligned_cols=113  Identities=14%  Similarity=0.218  Sum_probs=74.0

Q ss_pred             cChHHHHHHH---HhC---CCCEEEEcccCC--cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCC
Q 031554            3 TNPLDYVEPL---GKA---GASGFTFHVEIS--KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVE   69 (157)
Q Consensus         3 ~~p~~~i~~~---~~~---gad~v~vh~e~~--~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d   69 (157)
                      .+|+..++.+   .+.   |...+=+..-..  +.. .+.++++|+. |  +...+..|-....+...++++.+.  .++
T Consensus       170 ~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~~~~~d-~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~  248 (390)
T 3ugv_A          170 SPAEVAAEAVELKAEGQGTGFKGLKLRMGRDDPAVD-IETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLE  248 (390)
T ss_dssp             CHHHHHHHHHHHHHTTCTTCCSEEEEECCCSSHHHH-HHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCS
T ss_pred             CCHHHHHHHHHHHHHhhhCCCcEEEEecCCCCHHHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence            3566666544   456   999999886432  233 5677888875 4  455566677777766544443102  234


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEE
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCI  127 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~v  127 (157)
                      +|          .|++.+..++-.+++++.. +++|+.|..+. ...+.++++.| +|++
T Consensus       249 ~i----------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v  297 (390)
T 3ugv_A          249 WI----------EEPVVYDNFDGYAQLRHDL-KTPLMIGENFYGPREMHQALQAGACDLV  297 (390)
T ss_dssp             EE----------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred             EE----------ECCCCcccHHHHHHHHHhc-CCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence            44          3455555666777777764 69999999998 68888888876 6776

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=89.55  E-value=1.6  Score=33.36  Aligned_cols=66  Identities=12%  Similarity=0.105  Sum_probs=47.0

Q ss_pred             HHHHHHHHhCCCCEEEEcccC--CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEI--SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ...++.++++|+|.+.+....  ..+.+.++++.+|+...-+.+..  .++    ..+.   +++|.++++++..+.
T Consensus        26 ~~~l~~~~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~~~~Piil~p--~~~----~~~~---~gaD~il~pslln~~   93 (235)
T 3w01_A           26 DDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSKIRRYPLPLVLEI--SNI----ESVM---PGFDFYFVPTVLNST   93 (235)
T ss_dssp             HHHHHHHHTSSCSEEEECCSSCCCHHHHHHHHHHHTTSCSCEEEEC--CCS----TTCC---TTCSEEEEEEETTBS
T ss_pred             HHHHHHHHHcCCCEEEECCcCCcCHHHHHHHHHHhcCcCCCEEEec--CCH----HHhh---cCCCEEEEccccCCC
Confidence            446777899999999999754  22233889999998655555544  344    2234   789999999998763

>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A

Probab=89.55  E-value=0.83  Score=37.58  Aligned_cols=87  Identities=9%  Similarity=0.077  Sum_probs=55.4

Q ss_pred             HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE
Q 031554           32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE  106 (157)
Q Consensus        32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~  106 (157)
                      .+.++++|+. |  +.+.+..|-....+....+++.+.  .++++          .|++.+..++-.+++++.. +++|+
T Consensus       213 ~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i----------EqP~~~~d~~~~~~l~~~~-~iPIa  281 (424)
T 3v3w_A          213 PDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWM----------EDAVPAENQESFKLIRQHT-TTPLA  281 (424)
T ss_dssp             HHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEE----------ECCSCCSSTTHHHHHHHHC-CSCEE
T ss_pred             HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEE----------ECCCChHhHHHHHHHHhhC-CCCEE
Confidence            4667788875 4  455666677777766544432102  34444          2333333445566666663 68999


Q ss_pred             EEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554          107 VDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus       107 vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                      .|+.+. .+.+.++++.| +|++.+
T Consensus       282 ~dE~~~~~~~~~~~i~~ga~d~v~~  306 (424)
T 3v3w_A          282 VGEVFNSIHDCRELIQNQWIDYIRT  306 (424)
T ss_dssp             ECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred             EccCcCCHHHHHHHHHcCCCCeEee
Confidence            999998 68899888876 677743

>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0

Probab=89.54  E-value=3.1  Score=27.34  Aligned_cols=102  Identities=17%  Similarity=0.219  Sum_probs=63.0

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCc-EEEEcC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLD-IEVDGG  110 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~-I~vdGG  110 (157)
                      +-..+++.|..+..+   .+..+.++.+.+  ..+|.|++-...|+..|       ++-++++++.  .++.+ |.+.+.
T Consensus        20 l~~~L~~~g~~v~~~---~~~~~al~~~~~--~~~dlvl~D~~lp~~~g-------~~~~~~lr~~~~~~~~pii~~t~~   87 (136)
T 3t6k_A           20 LELVLRGAGYEVRRA---ASGEEALQQIYK--NLPDALICDVLLPGIDG-------YTLCKRVRQHPLTKTLPILMLTAQ   87 (136)
T ss_dssp             HHHHHHHTTCEEEEE---SSHHHHHHHHHH--SCCSEEEEESCCSSSCH-------HHHHHHHHHSGGGTTCCEEEEECT
T ss_pred             HHHHHHHCCCEEEEe---CCHHHHHHHHHh--CCCCEEEEeCCCCCCCH-------HHHHHHHHcCCCcCCccEEEEecC
Confidence            334456667765422   333344443332  46898887655676544       4455556553  34555 455666


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      -+.+...+..++||+.+     +.+.-++.+....+++.++.
T Consensus        88 ~~~~~~~~~~~~ga~~~-----l~KP~~~~~L~~~i~~~l~~  124 (136)
T 3t6k_A           88 GDISAKIAGFEAGANDY-----LAKPFEPQELVYRVKNILAR  124 (136)
T ss_dssp             TCHHHHHHHHHHTCSEE-----EETTCCHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHhcCcceE-----EeCCCCHHHHHHHHHHHHhc
Confidence            66788888899999987     44555777777778777654

>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}

Probab=89.53  E-value=3.1  Score=27.26  Aligned_cols=74  Identities=14%  Similarity=0.167  Sum_probs=49.8

Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHh----hCCCCc-EEEEcCCCHhhHHHHHHcC-CCEEEEcccccCCCCHH
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLD-IEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPA  140 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~----~~~~~~-I~vdGGI~~~~i~~~~~~G-ad~vV~GSai~~~~d~~  140 (157)
                      .+|.|++-...|+..|       ++-++++++    ..++.+ |.+.+.-+.+........| ++.+     +.+.-++.
T Consensus        60 ~~dlvi~D~~l~~~~g-------~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~-----l~KP~~~~  127 (146)
T 3ilh_A           60 WPSIICIDINMPGING-------WELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYY-----VSKPLTAN  127 (146)
T ss_dssp             CCSEEEEESSCSSSCH-------HHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEE-----ECSSCCHH
T ss_pred             CCCEEEEcCCCCCCCH-------HHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCccee-----eeCCCCHH
Confidence            4788877555565443       556666766    445665 4556666678888889999 9987     44555777


Q ss_pred             HHHHHHHHHHHH
Q 031554          141 HVISLMRKSVED  152 (157)
Q Consensus       141 ~~~~~l~~~~~~  152 (157)
                      +....+++....
T Consensus       128 ~L~~~i~~~~~~  139 (146)
T 3ilh_A          128 ALNNLYNKVLNE  139 (146)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHh
Confidence            777777766554

>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*

Probab=89.33  E-value=5.6  Score=32.77  Aligned_cols=88  Identities=11%  Similarity=0.114  Sum_probs=57.1

Q ss_pred             HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE
Q 031554           32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE  106 (157)
Q Consensus        32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~  106 (157)
                      .+.++++|+. |  +.+.+..|-....+....+++.+.  .+++|          .|++.+..++-++++++. .+++|+
T Consensus       227 ~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~i----------EeP~~~~d~~~~~~l~~~-~~iPIa  295 (440)
T 3t6c_A          227 PRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFL----------EDPVAPENTEWLKMLRQQ-SSTPIA  295 (440)
T ss_dssp             HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEE----------ECSSCGGGGGGHHHHHHH-CCSCEE
T ss_pred             HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEE----------ECCCChhhHHHHHHHHhh-cCCCEE
Confidence            4567778874 4  455666677777766555543112  33444          244555555666777776 368999


Q ss_pred             EEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554          107 VDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus       107 vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                      .|..+. .+.+.++++.| +|++.+-
T Consensus       296 ~dE~~~~~~~~~~~i~~~a~d~v~~k  321 (440)
T 3t6c_A          296 MGELFVNVNEWKPLIDNKLIDYIRCH  321 (440)
T ss_dssp             ECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred             eCcccCCHHHHHHHHHcCCccceeec
Confidence            999998 68888888776 7877443

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=89.27  E-value=1.2  Score=34.55  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=59.9

Q ss_pred             HHHHHHHHHcCCceEE-EecCCCC-----HHhHHhhHhcCCCCCeEEEEe--eeCCCCCcccch-------------hHH
Q 031554           32 QELVQRIKSKGMRPGV-ALKPGTS-----VEEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMP-------------EMM   90 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl-~l~~~t~-----~~~~~~~~~~~~~~d~vl~m~--v~pG~~gq~~~~-------------~~~   90 (157)
                      .+.++.+|+.|.+.-+ .+....|     .+.++.+.+  .++|.|-+.-  .+|=.+|.....             ..+
T Consensus         8 ~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~--~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~   85 (271)
T 3nav_A            8 QALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLID--AGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICF   85 (271)
T ss_dssp             HHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHH--TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence            6677777777655433 3544544     233444443  5788887742  234334433332             456


Q ss_pred             HHHHHHHhhCCCCcEEEEcCCC-------HhhHHHHHHcCCCEEEEcc
Q 031554           91 DKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        91 ~ki~~l~~~~~~~~I~vdGGI~-------~~~i~~~~~~Gad~vV~GS  131 (157)
                      +-++++|+.++++++.+=|=.|       .+-++.+.++|+|++++.-
T Consensus        86 ~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipD  133 (271)
T 3nav_A           86 ELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIAD  133 (271)
T ss_dssp             HHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETT
T ss_pred             HHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECC
Confidence            7788888876678887754222       3346788999999998863

>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}

Probab=89.20  E-value=3.4  Score=27.33  Aligned_cols=74  Identities=16%  Similarity=0.264  Sum_probs=42.6

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc-CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG-GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~  144 (157)
                      ..+|.|++-...|+..|       ++-++++++..++.+|.+-. .-+.+.+.+..++||+.+     +.+.-++.+...
T Consensus        48 ~~~dlvllD~~lp~~~g-------~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~-----l~KP~~~~~L~~  115 (141)
T 3cu5_A           48 HPPNVLLTDVRMPRMDG-------IELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRY-----VEKPIDPSEIMD  115 (141)
T ss_dssp             SCCSEEEEESCCSSSCH-------HHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEE-----ECSSCCHHHHHH
T ss_pred             CCCCEEEEeCCCCCCCH-------HHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEE-----EeCCCCHHHHHH
Confidence            45788877555565443       45566667666777765544 445667778888999876     445456766666


Q ss_pred             HHHHHHH
Q 031554          145 LMRKSVE  151 (157)
Q Consensus       145 ~l~~~~~  151 (157)
                      .+++.++
T Consensus       116 ~i~~~~~  122 (141)
T 3cu5_A          116 ALKQSIQ  122 (141)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666554

>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*

Probab=89.19  E-value=5.2  Score=32.30  Aligned_cols=115  Identities=13%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             cChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceE-EEecCCCCHHhHHhhHhcCCC--C--Ce
Q 031554            3 TNPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPG-VALKPGTSVEEVYPLVEGANP--V--EM   70 (157)
Q Consensus         3 ~~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~g-l~l~~~t~~~~~~~~~~~~~~--~--d~   70 (157)
                      .+|+.+++.   +.+.|...+=++.-.. +.. .+.++++|+. |  +... +..|-....+...++++.+..  +  ++
T Consensus       141 ~~~e~~~~~a~~~~~~G~~~~KiKvG~~~~~d-~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~  219 (391)
T 3gd6_A          141 EEVESNLDVVRQKLEQGFDVFRLYVGKNLDAD-EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEM  219 (391)
T ss_dssp             THHHHHHHHHHHHHHTTCCEEEEECSSCHHHH-HHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCE
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeeCCCHHHH-HHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcce
Confidence            356666544   4567999999986431 223 5677778775 4  4556 666766777665555431133  3  33


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS  131 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS  131 (157)
                      |          .|++.+..++-++++++.. +++|  |..+. .+.+.++++.| +|++.+--
T Consensus       220 i----------EqP~~~~d~~~~~~l~~~~-~iPI--dE~~~~~~~~~~~~~~~~~d~v~~k~  269 (391)
T 3gd6_A          220 I----------ESPAPRNDFDGLYQLRLKT-DYPI--SEHVWSFKQQQEMIKKDAIDIFNISP  269 (391)
T ss_dssp             E----------ECCSCTTCHHHHHHHHHHC-SSCE--EEECCCHHHHHHHHHHTCCSEEEECH
T ss_pred             e----------cCCCChhhHHHHHHHHHHc-CCCc--CCCCCCHHHHHHHHHcCCCCEEEECc
Confidence            3          2455555567777777764 6788  88876 68888887765 78886643

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=89.19  E-value=6.9  Score=30.77  Aligned_cols=110  Identities=18%  Similarity=0.218  Sum_probs=64.5

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCCC-C-HHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPGT-S-VEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~t-~-~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      .+|. +...+.++|+-.+........+.+.+.++.+++.. ..+|+-+...+ . .+.++.+++  .++|.|.+-   .|
T Consensus        38 s~~~-la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~--~g~d~V~l~---~g  111 (326)
T 3bo9_A           38 GTPT-LAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIE--EKVPVVTFG---AG  111 (326)
T ss_dssp             SCHH-HHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHH--TTCSEEEEE---SS
T ss_pred             CCHH-HHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHH--CCCCEEEEC---CC
Confidence            3444 67788899987776654333333356777888753 44565443222 2 344444444  589998863   22


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                         .  .+..   ++.+++.  +.++.+. =-+.+.+..+.++|+|.+++
T Consensus       112 ---~--p~~~---~~~l~~~--g~~v~~~-v~s~~~a~~a~~~GaD~i~v  150 (326)
T 3bo9_A          112 ---N--PTKY---IRELKEN--GTKVIPV-VASDSLARMVERAGADAVIA  150 (326)
T ss_dssp             ---C--CHHH---HHHHHHT--TCEEEEE-ESSHHHHHHHHHTTCSCEEE
T ss_pred             ---C--cHHH---HHHHHHc--CCcEEEE-cCCHHHHHHHHHcCCCEEEE
Confidence               1  1233   3444443  4555441 13478888899999999998

>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}

Probab=89.14  E-value=5.2  Score=32.05  Aligned_cols=114  Identities=11%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCC--cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHh-c-CCCCCeEEE
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEIS--KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVE-G-ANPVEMVLV   73 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl~   73 (157)
                      +|+..++   .+.+.|...+=+..-..  +.. .+.++++|+.   ++...+..|-....+...++++ + -..+++|  
T Consensus       146 ~~~~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d-~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i--  222 (377)
T 3my9_A          146 DFDADLERMRAMVPAGHTVFKMKTGVKPHAEE-LRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFI--  222 (377)
T ss_dssp             SHHHHHHHHHHHTTTTCCEEEEECSSSCHHHH-HHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCE--
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEccCCCcHHHH-HHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEE--
Confidence            4555444   44566999998886442  233 5677788874   4555666665555544333332 1 0234554  


Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                              .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus       223 --------EqP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~  271 (377)
T 3my9_A          223 --------EQPVPRRHLDAMAGFAAAL-DTPILADESCFDAVDLMEVVRRQAADAISV  271 (377)
T ss_dssp             --------ECCSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHHHHHHTCCSEEEC
T ss_pred             --------ECCCCccCHHHHHHHHHhC-CCCEEECCccCCHHHHHHHHHcCCCCEEEe
Confidence                    2455555566777777763 79999999988 67888877655 787754

>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}

Probab=89.12  E-value=1.9  Score=35.05  Aligned_cols=112  Identities=13%  Similarity=0.068  Sum_probs=72.9

Q ss_pred             hHHHHHHH---HhCCCCEEEEcccCCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHh-c-CCCCCeEEEEee
Q 031554            5 PLDYVEPL---GKAGASGFTFHVEISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVE-G-ANPVEMVLVMTV   76 (157)
Q Consensus         5 p~~~i~~~---~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl~m~v   76 (157)
                      |+...+.+   .+.|...+=+.... +.. .+.++++|+.   ++...+..|-..+.+. .++++ + -..+++|     
T Consensus       164 ~e~~~~~a~~~~~~G~~~iKlKv~~-~~d-~~~v~avR~a~G~~~~L~vDaN~~w~~~~-~~~~~~l~~~~i~~i-----  235 (400)
T 3mwc_A          164 IETLIHQVEESLQEGYRRIKIKIKP-GWD-VEPLQETRRAVGDHFPLWTDANSSFELDQ-WETFKAMDAAKCLFH-----  235 (400)
T ss_dssp             HHHHHHHHHHHHHHTCSCEEEECBT-TBS-HHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHHHGGGCCSCE-----
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEeCc-chH-HHHHHHHHHhcCCCCEEEEeCCCCCCHHH-HHHHHHHHhcCCCEE-----
Confidence            66665544   55799999998753 334 5788888874   4556666665555544 22322 1 0134444     


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                           .|++.+..++-.+++++.. +++|+.|..+. .+.+..+++.| +|++.+-
T Consensus       236 -----EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k  285 (400)
T 3mwc_A          236 -----EQPLHYEALLDLKELGERI-ETPICLDESLISSRVAEFVAKLGISNIWNIK  285 (400)
T ss_dssp             -----ESCSCTTCHHHHHHHHHHS-SSCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             -----eCCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHhcCCCCEEEEc
Confidence                 3556655667777777763 68999999987 68888888766 7877553

>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}

Probab=89.11  E-value=2.7  Score=32.03  Aligned_cols=66  Identities=18%  Similarity=0.312  Sum_probs=43.6

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      +.+.+.-+||.-|-.+..   ...+.+++++++.. ++. .+=+|-|.+ +...++.|++.+=+||+||+..
T Consensus       157 ~~L~l~GlmTh~a~~dd~---~~~f~~l~~l~~~l-~~~-~lSmGmS~d-~~~Ai~~G~t~vRvGtaIfg~r  222 (244)
T 3r79_A          157 LKLPVEGLMCIPPAEENP---GPHFALLAKLAGQC-GLE-KLSMGMSGD-FETAVEFGATSVRVGSAIFGSR  222 (244)
T ss_dssp             SCCCCCEEECCCCTTSCS---HHHHHHHHHHHHHH-TCC-EEECCCTTT-HHHHHHTTCSEEEECHHHHCCH
T ss_pred             CCCEEEEEEecCCCCCCH---HHHHHHHHHHHHhC-CCC-EEEeecchh-HHHHHHcCCCEEEeeHHHhCCC
Confidence            778888888765432221   15667777777653 333 356666643 2334679999999999999854

>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1

Probab=88.92  E-value=6.5  Score=30.14  Aligned_cols=118  Identities=14%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccC---------CcchHHHHHHHHHHcCCceEEEecCCCCHH--------hHHhhHhcCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEI---------SKDNWQELVQRIKSKGMRPGVALKPGTSVE--------EVYPLVEGANPV   68 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~---------~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~--------~~~~~~~~~~~~   68 (157)
                      ...++++.+.|||.+..|--.         ...+..+.+..+.++|+-+   ..++|+++        .+.+.+   ..-
T Consensus        49 ~~vi~eAi~~gadlIitHHP~~f~~~~~~~~~~~~~~~i~~li~~~I~l---ya~Ht~lD~~~~G~n~~La~~L---gl~  122 (267)
T 2fyw_A           49 EETVAEAIEKGVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAV---YVSHTNIDIVENGLNDWFCQML---GIE  122 (267)
T ss_dssp             HHHHHHHHHTTCSEEEESSCSCCSCCCCCCTTSHHHHHHHHHHHTTCEE---EECSHHHHHSTTSHHHHHHHHH---TCE
T ss_pred             HHHHHHHHHCCCCEEEECCccccCCccccccCchHHHHHHHHHHCCCeE---EEeeccccccCCCHHHHHHHHc---CCC
Confidence            356899999999999999211         1223367888888888742   34456553        233444   222


Q ss_pred             CeEEEEeee---CCC--CCcc--c-chhHHHHHHHHHhh----------C-CC---CcEEEEcCCCHhhHHHHHHcCCCE
Q 031554           69 EMVLVMTVE---PGF--GGQK--F-MPEMMDKVRSLRNR----------Y-PS---LDIEVDGGLGPSTIAEAASAGANC  126 (157)
Q Consensus        69 d~vl~m~v~---pG~--~gq~--~-~~~~~~ki~~l~~~----------~-~~---~~I~vdGGI~~~~i~~~~~~Gad~  126 (157)
                      +.-.+ ...   .|.  -|.-  . .++..+++++.-..          . ++   -+|++=||-...-+....++|||.
T Consensus       123 ~~~~l-~~~~~~~g~G~ig~l~~~t~~el~~~vk~~l~~~~vr~~~~~~g~~~~~I~rVAv~~GsG~~~~~~a~~~gaD~  201 (267)
T 2fyw_A          123 ETTYL-QETGPERGIGRIGNIQPQTFWELAQQVKQVFDLDSLRMVHYQEDDLQKPISRVAICGGSGQSFYKDALAKGADV  201 (267)
T ss_dssp             EEEEE-EEEETTEEEEEEEEEEEEEHHHHHHHHHHHTTCSCCEEECSCTTGGGSEEEEEEEESSSCGGGHHHHHHTTCSE
T ss_pred             ccccc-ccCCCCCCeEEEEEeccCCHHHHHHHHHHHcCCCeEEEEeccCCCCCCceeEEEEEcCCCHHHHHHHHHcCCCE
Confidence            22211 110   011  1221  1 12233334332211          0 01   236677787777888888999999


Q ss_pred             EEEc
Q 031554          127 IVAG  130 (157)
Q Consensus       127 vV~G  130 (157)
                      +|.|
T Consensus       202 ~ITG  205 (267)
T 2fyw_A          202 YITG  205 (267)
T ss_dssp             EEES
T ss_pred             EEEc
Confidence            9998

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=88.90  E-value=6.3  Score=29.99  Aligned_cols=97  Identities=13%  Similarity=0.201  Sum_probs=54.7

Q ss_pred             HHHHHHHHHcCCceEE-EecCCCCH-H----hHHhhHhcCCCCCeEEEEe--eeCCCCCcccc-------------hhHH
Q 031554           32 QELVQRIKSKGMRPGV-ALKPGTSV-E----EVYPLVEGANPVEMVLVMT--VEPGFGGQKFM-------------PEMM   90 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl-~l~~~t~~-~----~~~~~~~~~~~~d~vl~m~--v~pG~~gq~~~-------------~~~~   90 (157)
                      .+.++.+|+.|.+.-+ .+.+.+|. +    .++.+.+  .++|.|-+..  ..|-.+|....             ...+
T Consensus         5 ~~~f~~~~~~~~~~~i~~i~~g~p~~~~~~~~~~~l~~--~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~   82 (262)
T 2ekc_A            5 SDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLK--NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVL   82 (262)
T ss_dssp             HHHHHHHHHHTBCEEEEEEETTSSCHHHHHHHHHHHHH--TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHhcCCceEEEEecCCCCChHHHHHHHHHHHH--cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHH
Confidence            5566667665544322 23333332 2    3444443  5799988742  11222222111             2345


Q ss_pred             HHHHHHHhhCCCCcEEEEcCCC-------HhhHHHHHHcCCCEEEEc
Q 031554           91 DKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        91 ~ki~~l~~~~~~~~I~vdGGI~-------~~~i~~~~~~Gad~vV~G  130 (157)
                      +-++++|+..|++++.+-|=.|       .+-++.+.++|+|++++.
T Consensus        83 ~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~  129 (262)
T 2ekc_A           83 ELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVP  129 (262)
T ss_dssp             HHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECT
T ss_pred             HHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEEC
Confidence            5688888886688887754444       244567899999998875

>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A

Probab=88.84  E-value=3.1  Score=26.38  Aligned_cols=102  Identities=11%  Similarity=0.084  Sum_probs=59.0

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-CCCCcccchhHHHHHHHHHhh--CCCCcEEEE
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRNR--YPSLDIEVD  108 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-G~~gq~~~~~~~~ki~~l~~~--~~~~~I~vd  108 (157)
                      ..+-+.+++.|..+..+   .+..+.+..+.+  ..+|.|++-...| +..       .++-++++++.  .++.++.+-
T Consensus        19 ~~l~~~L~~~g~~v~~~---~~~~~a~~~~~~--~~~dlvi~d~~~~~~~~-------g~~~~~~l~~~~~~~~~~ii~~   86 (127)
T 2gkg_A           19 ATLRSALEGRGFTVDET---TDGKGSVEQIRR--DRPDLVVLAVDLSAGQN-------GYLICGKLKKDDDLKNVPIVII   86 (127)
T ss_dssp             HHHHHHHHHHTCEEEEE---CCHHHHHHHHHH--HCCSEEEEESBCGGGCB-------HHHHHHHHHHSTTTTTSCEEEE
T ss_pred             HHHHHHHHhcCceEEEe---cCHHHHHHHHHh--cCCCEEEEeCCCCCCCC-------HHHHHHHHhcCccccCCCEEEE
Confidence            34444566667765422   233333333332  3578887754444 322       34566777765  466765554


Q ss_pred             cCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      +.-+.+......++|++.++     .+.-++.+....+++.+
T Consensus        87 ~~~~~~~~~~~~~~g~~~~l-----~kp~~~~~l~~~i~~~~  123 (127)
T 2gkg_A           87 GNPDGFAQHRKLKAHADEYV-----AKPVDADQLVERAGALI  123 (127)
T ss_dssp             ECGGGHHHHHHSTTCCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred             ecCCchhHHHHHHhCcchhe-----eCCCCHHHHHHHHHHHH
Confidence            55556788888999999873     44446666666665543

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=88.80  E-value=3.1  Score=33.15  Aligned_cols=69  Identities=12%  Similarity=0.124  Sum_probs=46.8

Q ss_pred             cChHHHHHHHHhCCCCEEEEccc---------CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEE
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVE---------ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLV   73 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e---------~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~   73 (157)
                      +++..+++.+.++|+|++++|.-         ..... .++++.+|+.-..+-++..-=+..+.++++++. ..+|.|.+
T Consensus       229 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~-~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~-G~aD~V~i  306 (340)
T 3gr7_A          229 KDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQ-VPFAELIRREADIPTGAVGLITSGWQAEEILQN-GRADLVFL  306 (340)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTT-HHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHT-TSCSEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCcccc-HHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHC-CCeeEEEe
Confidence            45778899999999999999831         11123 567888888633344444433567777777764 45999987

>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1

Probab=88.73  E-value=4.3  Score=32.73  Aligned_cols=115  Identities=12%  Similarity=0.163  Sum_probs=71.3

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      +|+.+++.   +.+.|.+.+=+.... ... .+.++++|+.  +++..+..|-....+.+ .+++.+...+...   +  
T Consensus       161 ~~e~~~~~a~~~~~~G~~~~KiKvg~-~~d-~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i~~---i--  232 (393)
T 1wuf_A          161 NVETLLQLVNQYVDQGYERVKLKIAP-NKD-IQFVEAVRKSFPKLSLMADANSAYNREDF-LLLKELDQYDLEM---I--  232 (393)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEECBT-TBS-HHHHHHHHTTCTTSEEEEECTTCCCGGGH-HHHHTTGGGTCSE---E--
T ss_pred             CHHHHHHHHHHHHHHhhHhheeccCh-HHH-HHHHHHHHHHcCCCEEEEECCCCCCHHHH-HHHHHHHhCCCeE---E--
Confidence            36655443   456798998887643 334 4668888886  45566666766666666 5553212222111   1  


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                         .|++.+..++-.+++++. ..++|+.|-.+. ...++++++.| +|++.+=
T Consensus       233 ---EqP~~~~d~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik  282 (393)
T 1wuf_A          233 ---EQPFGTKDFVDHAWLQKQ-LKTRICLDENIRSVKDVEQAHSIGSCRAINLK  282 (393)
T ss_dssp             ---ECCSCSSCSHHHHHHHTT-CSSEEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             ---ECCCCCcCHHHHHHHHHh-CCCCEEECCCcCCHHHHHHHHHhCCCCEEEeC
Confidence               355555555566667665 368899998885 68888887777 5887663

>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A

Probab=88.71  E-value=2.2  Score=34.25  Aligned_cols=117  Identities=14%  Similarity=0.127  Sum_probs=74.0

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEE
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m   74 (157)
                      +|+...+   .+.+.|...+=+..-.. +.. .+.++++|+. |  +...+..|-....+...++++.+.  .+++|   
T Consensus       140 ~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~d-~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i---  215 (368)
T 3q45_A          140 EPHKMAADAVQIKKNGFEIIKVKVGGSKELD-VERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHC---  215 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCSCHHHH-HHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCE---
T ss_pred             CHHHHHHHHHHHHHcCCCeEEEEecCCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEE---
Confidence            5666554   44567999998875432 233 5677788875 4  445556666666665444432101  34444   


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccc
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSS  132 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSa  132 (157)
                             .|++.+..++-.+++++. .+++|+.|+.+. .+.+.++++.| +|++.+--.
T Consensus       216 -------EqP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~  267 (368)
T 3q45_A          216 -------EEPVSRNLYTALPKIRQA-CRIPIMADESCCNSFDAERLIQIQACDSFNLKLS  267 (368)
T ss_dssp             -------ECCBCGGGGGGHHHHHHT-CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTT
T ss_pred             -------ECCCChhHHHHHHHHHhh-CCCCEEEcCCcCCHHHHHHHHHcCCCCeEEechh
Confidence                   355555555566677765 378999999987 68888887754 788866543

>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}

Probab=88.55  E-value=3.9  Score=27.16  Aligned_cols=102  Identities=14%  Similarity=0.254  Sum_probs=57.1

Q ss_pred             HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCc-EEEEcCCCH
Q 031554           36 QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLD-IEVDGGLGP  113 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~-I~vdGGI~~  113 (157)
                      +.+.+.|..+.. .  .+..+.++.+ +. ..+|.|++-...||..|.    +.++++++.... .+..+ |.+.+.-+.
T Consensus        32 ~~L~~~g~~v~~-~--~~~~~al~~~-~~-~~~dlvl~D~~mp~~~g~----~~~~~lr~~~~~~~~~~pii~~s~~~~~  102 (143)
T 3m6m_D           32 RLLEKAGHKVLC-V--NGAEQVLDAM-AE-EDYDAVIVDLHMPGMNGL----DMLKQLRVMQASGMRYTPVVVLSADVTP  102 (143)
T ss_dssp             HHHHC--CEEEE-E--SSHHHHHHHH-HH-SCCSEEEEESCCSSSCHH----HHHHHHHHHHHTTCCCCCEEEEESCCCH
T ss_pred             HHHHHcCCeEEE-e--CCHHHHHHHH-hc-CCCCEEEEeCCCCCCCHH----HHHHHHHhchhccCCCCeEEEEeCCCCH
Confidence            334555665432 2  2333333333 22 568988876556775542    344444443322 23444 556666778


Q ss_pred             hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      +.+..+.++||+.+     +.+.-++.+....+++...
T Consensus       103 ~~~~~~~~~Ga~~~-----l~KP~~~~~L~~~l~~~~~  135 (143)
T 3m6m_D          103 EAIRACEQAGARAF-----LAKPVVAAKLLDTLADLAV  135 (143)
T ss_dssp             HHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHcChhhe-----eeCCCCHHHHHHHHHHHHH
Confidence            88899999999987     4455566666666666543

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=88.54  E-value=7.1  Score=30.10  Aligned_cols=134  Identities=19%  Similarity=0.338  Sum_probs=76.3

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCc-------chHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISK-------DNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV   76 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~-------~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v   76 (157)
                      -..+++.+.++|.+.|-+......       +. .+.++.+++. +.++.+.+ +  ..+.++..++  .+++.|.+.  
T Consensus        28 k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~-~e~~~~i~~~~~~~v~~l~-~--n~~~i~~a~~--~G~~~V~i~--   99 (295)
T 1ydn_A           28 KIALINRLSDCGYARIEATSFVSPKWVPQLADS-REVMAGIRRADGVRYSVLV-P--NMKGYEAAAA--AHADEIAVF--   99 (295)
T ss_dssp             HHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTH-HHHHHHSCCCSSSEEEEEC-S--SHHHHHHHHH--TTCSEEEEE--
T ss_pred             HHHHHHHHHHcCcCEEEEccCcCccccccccCH-HHHHHHHHhCCCCEEEEEe-C--CHHHHHHHHH--CCCCEEEEE--
Confidence            356789999999999999742222       24 6777777665 55554333 2  3566666665  578887664  


Q ss_pred             eCCCCC------cccchhHHHHH----HHHHhhCCCCcEE--E--E------cCCCHhhHHHHH----HcCCCEEEEccc
Q 031554           77 EPGFGG------QKFMPEMMDKV----RSLRNRYPSLDIE--V--D------GGLGPSTIAEAA----SAGANCIVAGSS  132 (157)
Q Consensus        77 ~pG~~g------q~~~~~~~~ki----~~l~~~~~~~~I~--v--d------GGI~~~~i~~~~----~~Gad~vV~GSa  132 (157)
                      .++...      ..-.++.++++    +.+++.  +..+.  +  -      +-.+++.+.++.    ++|||.+.+.-.
T Consensus       100 ~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt  177 (295)
T 1ydn_A          100 ISASEGFSKANINCTIAESIERLSPVIGAAIND--GLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDT  177 (295)
T ss_dssp             EESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred             EecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Confidence            222100      11133455554    334444  34333  1  1      235666665554    799999988832


Q ss_pred             ccCCCCHHHHHHHHHHH
Q 031554          133 VFGAPEPAHVISLMRKS  149 (157)
Q Consensus       133 i~~~~d~~~~~~~l~~~  149 (157)
                       .+...|....+.++.+
T Consensus       178 -~G~~~P~~~~~lv~~l  193 (295)
T 1ydn_A          178 -IGRGTPDTVAAMLDAV  193 (295)
T ss_dssp             -TSCCCHHHHHHHHHHH
T ss_pred             -CCCcCHHHHHHHHHHH
Confidence             2234676655555544

>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}

Probab=88.42  E-value=2.5  Score=27.88  Aligned_cols=104  Identities=13%  Similarity=0.185  Sum_probs=60.5

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-CCCCcccchhHHHHHHHHHhhCCCCcE-EEEc
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-G~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdG  109 (157)
                      ..+-+.+.+.|..+..+   .+..+.+..+.+. ..+|.|++-...| |..|       ++-++++++. ++.+| .+.+
T Consensus        19 ~~l~~~L~~~g~~v~~~---~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g-------~~~~~~l~~~-~~~~ii~ls~   86 (140)
T 3h5i_A           19 KTIANILNKYGYTVEIA---LTGEAAVEKVSGG-WYPDLILMDIELGEGMDG-------VQTALAIQQI-SELPVVFLTA   86 (140)
T ss_dssp             HHHHHHHHHTTCEEEEE---SSHHHHHHHHHTT-CCCSEEEEESSCSSSCCH-------HHHHHHHHHH-CCCCEEEEES
T ss_pred             HHHHHHHHHcCCEEEEe---cChHHHHHHHhcC-CCCCEEEEeccCCCCCCH-------HHHHHHHHhC-CCCCEEEEEC
Confidence            34445566677764422   3344444444321 3578887754445 3333       4455556655 56654 4555


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .-+.+....+.++||+.+     +.+.-++.+....++..++.
T Consensus        87 ~~~~~~~~~~~~~g~~~~-----l~KP~~~~~l~~~i~~~l~~  124 (140)
T 3h5i_A           87 HTEPAVVEKIRSVTAYGY-----VMKSATEQVLITIVEMALRL  124 (140)
T ss_dssp             SSSCCCCGGGGGSCEEEE-----EETTCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCcEE-----EeCCCCHHHHHHHHHHHHHH
Confidence            566677778888998876     44545677766777766654

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=88.33  E-value=1.9  Score=31.60  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=57.1

Q ss_pred             hHHHHHHHHhCCCCEEEEcccC-CcchH---HHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            5 PLDYVEPLGKAGASGFTFHVEI-SKDNW---QELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~-~~~~~---~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      +.+.++.+.+.|+|++.+..-. ....+   .+.++.+++.  ...+.+.++  ..++.+.+     .++|.|.+    +
T Consensus        33 ~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~--~~~~~a~~-----~gad~v~l----~  101 (227)
T 2tps_A           33 PVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVN--DDVELALN-----LKADGIHI----G  101 (227)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEE--SCHHHHHH-----HTCSEEEE----C
T ss_pred             HHHHHHHHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEc--CHHHHHHH-----cCCCEEEE----C
Confidence            4567889999999999987322 12222   2344444331  112345554  44554433     36898865    2


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      ...    . . +   .++++......+.+.- -+.+.+....+.|+|.+.+|+
T Consensus       102 ~~~----~-~-~---~~~~~~~g~~~~~~s~-~t~~e~~~a~~~g~d~v~~~~  144 (227)
T 2tps_A          102 QED----A-N-A---KEVRAAIGDMILGVSA-HTMSEVKQAEEDGADYVGLGP  144 (227)
T ss_dssp             TTS----S-C-H---HHHHHHHTTSEEEEEE-CSHHHHHHHHHHTCSEEEECC
T ss_pred             CCc----c-C-H---HHHHHhcCCcEEEEec-CCHHHHHHHHhCCCCEEEECC
Confidence            211    1 1 2   3333321113333321 255667778889999999865

>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*

Probab=88.31  E-value=7.6  Score=31.72  Aligned_cols=129  Identities=15%  Similarity=0.183  Sum_probs=70.5

Q ss_pred             HHHHHHHhCCCCEEEEc--ccCC-------------cchHHHHHHHHHHcCCceEEEec-------CCC----------C
Q 031554            7 DYVEPLGKAGASGFTFH--VEIS-------------KDNWQELVQRIKSKGMRPGVALK-------PGT----------S   54 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh--~e~~-------------~~~~~~~i~~ir~~g~~~gl~l~-------~~t----------~   54 (157)
                      +.++.+.++|++.|-+.  .+..             .+.+.+.+++++++|+++-+.++       |..          +
T Consensus        52 d~~~ilk~~G~N~VRlrvwv~p~~~~g~~y~~g~~d~~~~~~~a~~Ak~~GLkVlldfHysD~WadPg~Q~~P~aW~~~~  131 (399)
T 1ur4_A           52 DIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWANLN  131 (399)
T ss_dssp             CHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGTTCC
T ss_pred             hHHHHHHHCCCCEEEEeeecCCcccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEeccCCccCCcccccCccccccCC
Confidence            35677889999999973  1111             11225677799999999999875       321          1


Q ss_pred             HH------------hHHhhHhcCCCCCeEEEEe-eeCCCCCcccchhH---H-HHHHHHHhhCCCCcE--EEEcCCCHhh
Q 031554           55 VE------------EVYPLVEGANPVEMVLVMT-VEPGFGGQKFMPEM---M-DKVRSLRNRYPSLDI--EVDGGLGPST  115 (157)
Q Consensus        55 ~~------------~~~~~~~~~~~~d~vl~m~-v~pG~~gq~~~~~~---~-~ki~~l~~~~~~~~I--~vdGGI~~~~  115 (157)
                      .+            .++.+.+.-..+|+|.+.. +..|+.+...-+..   + +-++.+|+..|+.+|  ..+.|-+.++
T Consensus       132 ~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih~~~~~~~~~  211 (399)
T 1ur4_A          132 FEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETSGR  211 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcchHH
Confidence            11            1122221102345665542 12233322211111   1 124556667777664  4466655444


Q ss_pred             ----HHHHHHcCCCEEEEcccccC
Q 031554          116 ----IAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus       116 ----i~~~~~~Gad~vV~GSai~~  135 (157)
                          ...+...|+|.=|+|...+.
T Consensus       212 ~~~~~d~l~~~g~d~DvIG~syYp  235 (399)
T 1ur4_A          212 YAWIAETLHRHHVDYDVFASSYYP  235 (399)
T ss_dssp             HHHHHHHHHHTTCCCSEEEEEECT
T ss_pred             HHHHHHHHHHcCCCcCeEeEecCc
Confidence                35667788888788876653

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=88.26  E-value=3.1  Score=32.74  Aligned_cols=113  Identities=16%  Similarity=0.077  Sum_probs=55.8

Q ss_pred             HHHHHHHhCCCCEEEEcccC----CcchHHHHHHHHHHc-CCceEEE-ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEI----SKDNWQELVQRIKSK-GMRPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~----~~~~~~~~i~~ir~~-g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ++.+.+.++|||.+.+..-.    .++-+.+..+.+-+. +.-+.+- ++++-+.+.+.++.   ....++-   +.=. 
T Consensus        97 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La---~~pnIvg---iKds-  169 (316)
T 3e96_A           97 ELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLA---PLQNLVG---VKYA-  169 (316)
T ss_dssp             HHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHT---TCTTEEE---EEEC-
T ss_pred             HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHH---cCCCEEE---EEeC-
Confidence            45566677777777765211    111123333333332 4333221 13445556666665   3333332   2211 


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEE-EEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                            ...+.++.++.+..++-.+. +=.|-....+..+...|++++|.|.+
T Consensus       170 ------sgd~~~~~~~~~~~~~~~f~~v~~G~d~~~~~~~l~~G~~G~is~~a  216 (316)
T 3e96_A          170 ------INDLPRFAKVVRSIPEEHQIAWICGTAEKWAPFFWHAGAKGFTSGLV  216 (316)
T ss_dssp             ------CCCHHHHHHHHTTSCGGGCCEEEETTCTTTHHHHHHHTCCEEEESGG
T ss_pred             ------CCCHHHHHHHHHhcCCCCceEEEeCChHHHHHHHHHCCCCEEEechh
Confidence                  11244556666554321232 33454445566667889999999976

>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}

Probab=88.26  E-value=3.5  Score=33.81  Aligned_cols=115  Identities=9%  Similarity=0.109  Sum_probs=72.6

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCC-------------------------cchHHHHHHHHHHc-C--CceEEEecCC
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEIS-------------------------KDNWQELVQRIKSK-G--MRPGVALKPG   52 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~-------------------------~~~~~~~i~~ir~~-g--~~~gl~l~~~   52 (157)
                      +|+...+   .+.+.|...+-+..-..                         ... .+.++++|+. |  +.+.+..|-.
T Consensus       154 ~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~e~v~avR~avG~d~~L~vDaN~~  232 (422)
T 3tji_A          154 TLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNT-VEMFHALREKYGWKLHILHDVHER  232 (422)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHH-HHHHHHHHHHHCSSSEEEEECTTC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHH-HHHHHHHHHHcCCCCEEEEECCCC
Confidence            4555554   45568999998864221                         122 5667888885 4  4555666766


Q ss_pred             CCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554           53 TSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV  128 (157)
Q Consensus        53 t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV  128 (157)
                      ...+....+++.+.  .++++          .|++.+..++-++++++.. +++|+.|+.+. .+.+.++++.| +|++.
T Consensus       233 ~~~~~A~~~~~~Le~~~i~~i----------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~ll~~ga~d~v~  301 (422)
T 3tji_A          233 LFPQQAVQLAKQLEPFQPYFI----------EDILPPQQSAWLEQVRQQS-CVPLALGELFNNPAEWHDLIVNRRIDFIR  301 (422)
T ss_dssp             SCHHHHHHHHHHHGGGCCSEE----------ECCSCGGGGGGHHHHHHHC-CCCEEECTTCCSGGGTHHHHHTTCCSEEC
T ss_pred             CCHHHHHHHHHHHHhhCCCeE----------ECCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHhcCCCCEEe
Confidence            67765554432102  34444          2445555555667777763 78999999998 68898888776 78774


Q ss_pred             Ec
Q 031554          129 AG  130 (157)
Q Consensus       129 ~G  130 (157)
                      +-
T Consensus       302 ~k  303 (422)
T 3tji_A          302 CH  303 (422)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...

Probab=88.25  E-value=4.1  Score=34.83  Aligned_cols=140  Identities=11%  Similarity=0.054  Sum_probs=82.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC--CHHhHHhhHhcCCCCCeEEEE----eeeCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT--SVEEVYPLVEGANPVEMVLVM----TVEPGF   80 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m----~v~pG~   80 (157)
                      ..+....+.|+|+|.+..--..+.+.++-+.+.+.|..+.+.-.-++  -++.+.+++   ...|.|++-    +++-|.
T Consensus       246 ~dl~f~~~~~vD~ia~SfVr~a~Dv~~~r~~L~~~g~~i~IIAKIE~~eav~nldeIl---~~sDgImVaRGDLgvei~~  322 (550)
T 3gr4_A          246 QDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFDEIL---EASDGIMVARGDLGIEIPA  322 (550)
T ss_dssp             HHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHH---HHSSEEEEEHHHHHHHSCG
T ss_pred             HHHHHHHHcCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHH---HhCCEEEEccchhcccCCH
Confidence            34566788999999999654444436666667777777766433344  456678888   567988874    222221


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcC----------CCHhhHHHHH---HcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGG----------LGPSTIAEAA---SAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG----------I~~~~i~~~~---~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                         ...+...+++-+.++.. +.++.+.--          -+...+..+.   --|+|++.+..-=..-+-|.++++.+.
T Consensus       323 ---e~vp~~Qk~iI~~c~~a-gkpVi~ATQMLeSMi~~p~PTRAEvsDVanAvldG~DavMLSgETA~G~yPveaV~~M~  398 (550)
T 3gr4_A          323 ---EKVFLAQKMMIGRCNRA-GKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQH  398 (550)
T ss_dssp             ---GGHHHHHHHHHHHHHHH-TCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHh-CCCEEEEehhhHHhhcCCCccHHHHHHHHHHHHcCCcEEEEecCccCCCCHHHHHHHHH
Confidence               11233444433333221 345444321          2334444443   349999988643333467899999888


Q ss_pred             HHHHHH
Q 031554          148 KSVEDA  153 (157)
Q Consensus       148 ~~~~~~  153 (157)
                      ++.+.+
T Consensus       399 ~I~~~a  404 (550)
T 3gr4_A          399 LIAREA  404 (550)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877643

>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*

Probab=88.24  E-value=8  Score=30.38  Aligned_cols=126  Identities=15%  Similarity=0.193  Sum_probs=75.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchH---HHHHHHHHH-cCCceEEEe-cCCCCHHhHHhhHh-c-CCCCCeEEEEeeeCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNW---QELVQRIKS-KGMRPGVAL-KPGTSVEEVYPLVE-G-ANPVEMVLVMTVEPG   79 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~---~~~i~~ir~-~g~~~gl~l-~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~pG   79 (157)
                      +-++.+...++|+|+|-.-+...+-   .++...+++ .|+.+..=+ +-+.+.+.++..+. . ..+++-|+.++-+|-
T Consensus        43 ~~~~~l~~l~p~fvsVT~gagg~~r~~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp  122 (304)
T 3fst_A           43 NSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLP  122 (304)
T ss_dssp             HHHHHHHTTCCSEEEECCCTTSSCHHHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             HHHHHHhcCCCCEEEEeeCCCCcchhHHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            3478888899999888865544321   345555654 698887744 33445555554443 1 258889999877653


Q ss_pred             CCC-cccchhHHHHHHHHHhhCCCCcEEEEcC----C---CH-hhH---HHHHHcCCCEEEEcccccC
Q 031554           80 FGG-QKFMPEMMDKVRSLRNRYPSLDIEVDGG----L---GP-STI---AEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        80 ~~g-q~~~~~~~~ki~~l~~~~~~~~I~vdGG----I---~~-~~i---~~~~~~Gad~vV~GSai~~  135 (157)
                      .++ ..| ....+-++.+|+. .++.|.|.|=    -   +. ..+   ++=+++|||.+| -=.+|.
T Consensus       123 ~~~~~~~-~~A~dLv~~ir~~-~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~KvdAGAdf~i-TQ~ffD  187 (304)
T 3fst_A          123 PGSGKPE-MYASDLVTLLKEV-ADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAI-TQFFFD  187 (304)
T ss_dssp             ------C-CCHHHHHHHHHHH-CCCEEEEEECTTCCTTCSCHHHHHHHHHHHHHHTCCEEE-ECCCSC
T ss_pred             CCCCCCC-CCHHHHHHHHHHc-CCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEE-eCccCC
Confidence            332 233 4577778888877 4688888752    1   21 123   333578999753 344553

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=88.19  E-value=8.2  Score=30.39  Aligned_cols=116  Identities=10%  Similarity=0.111  Sum_probs=67.9

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHH---hHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVE---EVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~---~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      .++.+.+. +|++-+......+.  ++++++-+.|+-+++.-... |+.+   .++++.+. ..-+++++-+.. .|+-.
T Consensus       124 ~v~~l~~~-vd~lkIgA~~~~n~--~LLr~va~~gkPVilK~Gms~t~~ei~~ave~i~~~-Gn~~iiL~erg~-~y~~~  198 (298)
T 3fs2_A          124 QCAAVAPV-VDVLQIPAFLCRQT--DLLIAAARTGRVVNVKKGQFLAPWDMKNVLAKITES-GNPNVLATERGV-SFGYN  198 (298)
T ss_dssp             HHHHHTTT-CSEEEECGGGTTCH--HHHHHHHHTTSEEEEECCTTCCGGGHHHHHHHHHTT-TCCCEEEEECCE-ECSSS
T ss_pred             HHHHHHhh-CCEEEECccccCCH--HHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHc-CCCeEEEEECCC-CCCCC
Confidence            45566666 99999997655554  68888888898877776543 4432   33444422 334444443221 22111


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEE---------------cCCC---HhhHHHHHHcCCCEEEEcc
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVD---------------GGLG---PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vd---------------GGI~---~~~i~~~~~~Gad~vV~GS  131 (157)
                      . ..-.+.-|..+|+ + +++|.+|               ||-+   ..-....+.+|||++++=.
T Consensus       199 ~-~~vdl~~i~~lk~-~-~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~  261 (298)
T 3fs2_A          199 T-LVSDMRALPIMAG-L-GAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIET  261 (298)
T ss_dssp             C-EECCTTHHHHHHT-T-TSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEE
T ss_pred             C-CccCHHHHHHHHH-c-CCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEe
Confidence            1 0123556777777 4 8999998               5544   2334456789999988864

>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A

Probab=88.13  E-value=8  Score=30.85  Aligned_cols=108  Identities=12%  Similarity=0.144  Sum_probs=68.8

Q ss_pred             hCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchh
Q 031554           14 KAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE   88 (157)
Q Consensus        14 ~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~   88 (157)
                      +.|...+=+..-.  .+.. .+.++++|+. |  +...+..|-....+....+++.+...+.-.+        .|++.+.
T Consensus       156 ~~G~~~~KiKvg~~~~~~d-~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--------EqP~~~~  226 (370)
T 1chr_A          156 RRRHNRFKVKLGFRSPQDD-LIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELI--------EQPVGRE  226 (370)
T ss_dssp             TTCCCEEEEECSSSCSHHH-HHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEEEE--------ECCSCTT
T ss_pred             HCCCCEEEEecCCCCHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE--------ECCCCcc
Confidence            3799998887543  2334 5778888885 4  5566667766666554443321023332221        2445555


Q ss_pred             HHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554           89 MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS  131 (157)
Q Consensus        89 ~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS  131 (157)
                      .++-++++++.. +++|+.|+.+. .+.+.++++.| +|++.+--
T Consensus       227 ~~~~~~~l~~~~-~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~  270 (370)
T 1chr_A          227 NTQALRRLSDNN-RVAIMADESLSTLASAFDLARDRSVDVFSLKL  270 (370)
T ss_dssp             CHHHHHHHHHHS-CSEEEESSSCCSHHHHHHHHTTTSCSEEEECT
T ss_pred             cHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCEEEECc
Confidence            566677777763 79999999987 68888888765 88887653

>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1

Probab=88.10  E-value=0.73  Score=38.90  Aligned_cols=35  Identities=17%  Similarity=0.146  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCCCHhhHHHHHHcCCCEEEEc--ccccC
Q 031554          101 PSLDIEVDGGLGPSTIAEAASAGANCIVAG--SSVFG  135 (157)
Q Consensus       101 ~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G--Sai~~  135 (157)
                      +++.|.+-|||+++++..+.++|+|+++.|  +++..
T Consensus       285 ~~~kI~aSggld~~~i~~l~~~G~~~~sfGvGT~Lt~  321 (494)
T 2f7f_A          285 TEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLIT  321 (494)
T ss_dssp             TTCEEEECSSCCHHHHHHHHHTTCCCCEEEECHHHHT
T ss_pred             CceEEEEECCCCHHHHHHHHHcCCCEEEEecCccccc
Confidence            468899999999999999999999887777  56654

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=88.01  E-value=7.4  Score=31.19  Aligned_cols=98  Identities=18%  Similarity=0.248  Sum_probs=59.1

Q ss_pred             HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCCHh
Q 031554           36 QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLGPS  114 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdGGI~~~  114 (157)
                      ..+.+.|..+..+   .+..+.+..+. . ..+|.|++-...|+.+|       ++-++++++..++.+| .+.+--+.+
T Consensus        18 ~~L~~~g~~v~~a---~~~~eal~~l~-~-~~~DlvllD~~mp~~dG-------~ell~~lr~~~~~~pvIvlT~~~~~~   85 (387)
T 1ny5_A           18 EYLSMKGIKVESA---ERGKEAYKLLS-E-KHFNVVLLDLLLPDVNG-------LEILKWIKERSPETEVIVITGHGTIK   85 (387)
T ss_dssp             HHHHHHTCEEEEE---SSHHHHHHHHH-H-SCCSEEEEESBCSSSBH-------HHHHHHHHHHCTTSEEEEEEETTCHH
T ss_pred             HHHHHCCCEEEEE---CCHHHHHHHHH-h-CCCCEEEEeCCCCCCCH-------HHHHHHHHhhCCCCcEEEEeCCCCHH
Confidence            3345557765432   23333333333 2 46898887655676443       4566777777777764 455666788


Q ss_pred             hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       115 ~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      ++.+..++||+.++.     +.-++.+....+++.+
T Consensus        86 ~~~~a~~~Ga~dyl~-----KP~~~~~L~~~i~~~l  116 (387)
T 1ny5_A           86 TAVEAMKMGAYDFLT-----KPCMLEEIELTINKAI  116 (387)
T ss_dssp             HHHHHHTTTCCEEEE-----ESCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCceEEec-----CCCCHHHHHHHHHHHH
Confidence            889999999998754     3335555444454443

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=87.91  E-value=7.5  Score=29.67  Aligned_cols=115  Identities=19%  Similarity=0.191  Sum_probs=64.6

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH----------HhHHhhHhcCCCCCeEE
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV----------EEVYPLVEGANPVEMVL   72 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~----------~~~~~~~~~~~~~d~vl   72 (157)
                      .++.+.++.+.+.|++.|+++.        .+++.++..+....+.++..+.+          ..++..++  .++|.|.
T Consensus        41 ~di~~~~~~a~~~~~~av~v~~--------~~v~~~~~~~~~liv~~~~~~~~~g~~~~~~~~~~ve~Ai~--~Ga~~v~  110 (263)
T 1w8s_A           41 ADPEYILRLARDAGFDGVVFQR--------GIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVS--LGASAVG  110 (263)
T ss_dssp             GCHHHHHHHHHHHTCSEEEECH--------HHHHHHCCSSSCEEEECEECCTTCCSSCCCEESSCHHHHHH--TTCSEEE
T ss_pred             hhHHHHHHHHHhhCCCEEEECH--------HHHHHhhcCCCcEEEEEeCCCCcCCCCccchHHHHHHHHHH--CCCCEEE
Confidence            4678999999999999999983        22333332233222333322211          33444444  5888887


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCC---------CHhhHH----HHHHcCCCEEEEcc
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGL---------GPSTIA----EAASAGANCIVAGS  131 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI---------~~~~i~----~~~~~Gad~vV~GS  131 (157)
                      + .++.|...   ....++.++++++..  .++++.+.--.         +.+.+.    ...++|||.+-+|.
T Consensus       111 ~-~~nig~~~---~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~  180 (263)
T 1w8s_A          111 Y-TIYPGSGF---EWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKY  180 (263)
T ss_dssp             E-EECTTSTT---HHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             E-EEecCCcC---HHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence            6 35556222   234555566665432  13333332223         555554    45789999998883

>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A

Probab=87.89  E-value=2.5  Score=33.70  Aligned_cols=116  Identities=14%  Similarity=0.072  Sum_probs=73.3

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHh-c-CCCCCeEEEE
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVE-G-ANPVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl~m   74 (157)
                      +|+..++.   +.+.|...+=+..-.. +.. .+.++++|+. |  +...+..|-..+.+...++++ + ...+++|   
T Consensus       140 ~~~~~~~~a~~~~~~G~~~~K~K~G~~~~~d-~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i---  215 (356)
T 3ro6_B          140 PVEETLAEAREHLALGFRVLKVKLCGDEEQD-FERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFI---  215 (356)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCSCHHHH-HHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCCCE---
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeCCCHHHH-HHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEE---
Confidence            56655544   4567999998886432 223 5677778875 4  455556676677665544432 1 0244555   


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC--CCEEEEcc
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG--ANCIVAGS  131 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G--ad~vV~GS  131 (157)
                             .|++.+..++-++++++.. +++|+.|+.+. .+.+.++.+.|  +|++.+--
T Consensus       216 -------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~  267 (356)
T 3ro6_B          216 -------EQPFPAGRTDWLRALPKAI-RRRIAADESLLGPADAFALAAPPAACGIFNIKL  267 (356)
T ss_dssp             -------ECCSCTTCHHHHHTSCHHH-HHTEEESTTCCSHHHHHHHHSSSCSCSEEEECH
T ss_pred             -------ECCCCCCcHHHHHHHHhcC-CCCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcc
Confidence                   2445555555666665542 57899999988 68888888865  89886643

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=87.80  E-value=1.6  Score=34.14  Aligned_cols=115  Identities=12%  Similarity=0.119  Sum_probs=65.2

Q ss_pred             HHHHHHHhCCCCEEEEcccCC------cc---hHHHHHHHHHHc--CCceEEEe--cCCCCHH---hHHhhHhcCCCCCe
Q 031554            7 DYVEPLGKAGASGFTFHVEIS------KD---NWQELVQRIKSK--GMRPGVAL--KPGTSVE---EVYPLVEGANPVEM   70 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~------~~---~~~~~i~~ir~~--g~~~gl~l--~~~t~~~---~~~~~~~~~~~~d~   70 (157)
                      .-++.+.+.|||-|-++....      .+   .+.+.++.+++.  +...-+-|  .--+..+   .+.++... .++|+
T Consensus       110 ~E~~~Av~~GAdEIDmVinig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L~d~e~i~~A~~ia~e-aGADf  188 (281)
T 2a4a_A          110 NDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKTTLAVLN-GNADF  188 (281)
T ss_dssp             HHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSHHHHHHHHHHHHT-TTCSE
T ss_pred             HHHHHHHHcCCCEEEEecchHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHH-hCCCE
Confidence            345778889999999886432      12   224566666664  22222222  1112333   22222222 68999


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHH-hh-------CCCCcEEEEcCCC-HhhHHHHHHcCCC
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLR-NR-------YPSLDIEVDGGLG-PSTIAEAASAGAN  125 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~-~~-------~~~~~I~vdGGI~-~~~i~~~~~~Gad  125 (157)
                      |=   ..-||....-..+..+-+++.- ..       ..++.|-+.|||+ .+++..++++|++
T Consensus       189 VK---TSTGf~~~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~  249 (281)
T 2a4a_A          189 IK---TSTGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARR  249 (281)
T ss_dssp             EE---CCCSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred             EE---eCCCCCCCCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence            94   3456652222233333333332 11       4678999999999 6888888888775

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=87.80  E-value=1.1  Score=29.62  Aligned_cols=104  Identities=8%  Similarity=0.003  Sum_probs=59.6

Q ss_pred             HHHHHHH-cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEE-EEc
Q 031554           34 LVQRIKS-KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIE-VDG  109 (157)
Q Consensus        34 ~i~~ir~-~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I~-vdG  109 (157)
                      +-+.+++ .|..+- ..  .+..+.+..+.+. ..+|.|++-...||      ....++-++++++  ..++.+|. +.+
T Consensus        20 l~~~L~~~~~~~v~-~~--~~~~~a~~~l~~~-~~~dlvi~D~~l~~------~~~g~~~~~~l~~~~~~~~~~ii~ls~   89 (140)
T 3lua_A           20 TKIIFDNIGEYDFI-EV--ENLKKFYSIFKDL-DSITLIIMDIAFPV------EKEGLEVLSAIRNNSRTANTPVIIATK   89 (140)
T ss_dssp             HHHHHHHHCCCEEE-EE--CSHHHHHTTTTTC-CCCSEEEECSCSSS------HHHHHHHHHHHHHSGGGTTCCEEEEES
T ss_pred             HHHHHHhccCccEE-EE--CCHHHHHHHHhcC-CCCcEEEEeCCCCC------CCcHHHHHHHHHhCcccCCCCEEEEeC
Confidence            3344555 566543 22  2333333333310 24788876433341      1245667777887  56676654 555


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      --+.+...++.++||+.++     .+.-++.+....+++.++.
T Consensus        90 ~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~~~~  127 (140)
T 3lua_A           90 SDNPGYRHAALKFKVSDYI-----LKPYPTKRLENSVRSVLKI  127 (140)
T ss_dssp             CCCHHHHHHHHHSCCSEEE-----ESSCCTTHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHHHh
Confidence            5667888899999999874     3444556666666665543

>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}

Probab=87.75  E-value=4.1  Score=27.17  Aligned_cols=58  Identities=22%  Similarity=0.237  Sum_probs=39.0

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      ..+|.|++-...|+..       .++-++++++..+..+|. +.+.-+.+....+.++||+.++.-
T Consensus        50 ~~~dlii~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k  108 (153)
T 3cz5_A           50 TTPDIVVMDLTLPGPG-------GIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTK  108 (153)
T ss_dssp             TCCSEEEECSCCSSSC-------HHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEET
T ss_pred             CCCCEEEEecCCCCCC-------HHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEec
Confidence            4578887643334422       355677777776776655 455556788888999999988654

>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*

Probab=87.74  E-value=5.1  Score=34.09  Aligned_cols=139  Identities=11%  Similarity=0.048  Sum_probs=82.3

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-------ceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEE----
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-------RPGVA--LKPGTSVEEVYPLVEGANPVEMVLVM----   74 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-------~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m----   74 (157)
                      +++...+.|+|+|.+..--..+.+.++-+.+.++|.       ++.+.  |....-++.+.+++   ...|.|++=    
T Consensus       221 ~l~fa~~~~vD~ialSFVr~~~Dv~~~r~~l~~~g~~~~~~~~~i~IiaKIE~~~av~NldeIi---~~sDgIMVARGDL  297 (526)
T 4drs_A          221 IVDFALKYNLDFIALSFVQNGADVQLCRQIISENTQYSNGIPSSIKIISKIENLEGVINFDSIC---SESDGIMVARGDL  297 (526)
T ss_dssp             HHHTTTTTTCSEEEETTCCSHHHHHHHHHHHHTCCTTTTTCCCCCEEEEEECSHHHHHTHHHHH---HHSSEEEEECTTH
T ss_pred             HHHHHHHhccCeeeecccCchhhHHHHHHHHHhhCcccccccccceeeeehhccHHHHHHHHHH---hhccEEEEECCcc
Confidence            345567889999999976555444555566666663       34443  64444556688888   678999873    


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc----------CCCHhhHHHH---HHcCCCEEEEcccccCCCCHHH
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG----------GLGPSTIAEA---ASAGANCIVAGSSVFGAPEPAH  141 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG----------GI~~~~i~~~---~~~Gad~vV~GSai~~~~d~~~  141 (157)
                      +++.+..   ..|..-++|-+.++. .+.++.+.-          =-|...+..+   +--|+|++.+..-=.....|.+
T Consensus       298 gvEip~e---~vp~~QK~II~~c~~-~gKPVI~ATQmLeSMi~np~PTRAEvsDVAnAV~DGaDavMLSgETA~G~yPve  373 (526)
T 4drs_A          298 GMEIPPE---KIFVAQKCMISKCNV-AGKPVVTATQMLESMIKSNRPTRAEMTDVANAVLDGSDCVMLSGETANGAFPFD  373 (526)
T ss_dssp             HHHSCGG---GHHHHHHHHHHHHHH-HTCCEEEESCTTGGGGSSSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCSCHHH
T ss_pred             cccCCHH---HHHHHHHHHHHHHHH-cCCeEEEhhhhhHHHhhCCCCCCchHHHHHHHHHhCCceEEEcchhhcccCHHH
Confidence            3333211   123344443333333 245555543          2233333333   4459999998743333368899


Q ss_pred             HHHHHHHHHHHH
Q 031554          142 VISLMRKSVEDA  153 (157)
Q Consensus       142 ~~~~l~~~~~~~  153 (157)
                      +++.|.++++.+
T Consensus       374 aV~~m~~I~~~a  385 (526)
T 4drs_A          374 AVNVMSRVCAQA  385 (526)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887754

>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*

Probab=87.64  E-value=6.9  Score=33.63  Aligned_cols=100  Identities=9%  Similarity=0.150  Sum_probs=59.0

Q ss_pred             cccCCcchHHHHHHH-HHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC
Q 031554           23 HVEISKDNWQELVQR-IKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP  101 (157)
Q Consensus        23 h~e~~~~~~~~~i~~-ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~  101 (157)
                      ..|..+-- ..++.. ++.+|.++ +.+.+..|.+.+.....- ..+|.|.+-+....     -.+.+.+-++++++..+
T Consensus       107 ~GD~HdiG-~~iva~~L~~~G~eV-i~LG~~vP~e~iv~aa~~-~~~diVgLS~l~t~-----~~~~m~~~i~~Lr~~g~  178 (579)
T 3bul_A          107 KGDVHDIG-KNIVGVVLQCNNYEI-VDLGVMVPAEKILRTAKE-VNADLIGLSGLITP-----SLDEMVNVAKEMERQGF  178 (579)
T ss_dssp             TTCCCCHH-HHHHHHHHHTTTCEE-EECCSSBCHHHHHHHHHH-HTCSEEEEECCSTH-----HHHHHHHHHHHHHHTTC
T ss_pred             CCCCchHH-HHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEEecCCC-----CHHHHHHHHHHHHHcCC
Confidence            34444433 444444 56667653 456677888876555543 58899887543321     12345556777887777


Q ss_pred             CCcEEEEcCCCHhhHH--HH--HHcCCCEEEEc
Q 031554          102 SLDIEVDGGLGPSTIA--EA--ASAGANCIVAG  130 (157)
Q Consensus       102 ~~~I~vdGGI~~~~i~--~~--~~~Gad~vV~G  130 (157)
                      +++|.|.|........  .+  .-.|||+.+-.
T Consensus       179 ~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~D  211 (579)
T 3bul_A          179 TIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQN  211 (579)
T ss_dssp             CSCEEEESTTCCHHHHHHHTGGGCSSCEEECCS
T ss_pred             CCeEEEEccccchhhhhhhhhhcccCCeEEECC
Confidence            8999998886644332  11  01288877433

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=87.60  E-value=8.4  Score=30.24  Aligned_cols=110  Identities=18%  Similarity=0.188  Sum_probs=62.5

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc-CCceEEEecC-CCCH-HhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK-GMRPGVALKP-GTSV-EEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g~~~gl~l~~-~t~~-~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      .+|. ++..+.++|+-.+....-...+.+.+.++.+++. +..+|+-+-. +.+. +.++...+  .++|.|.+..-.| 
T Consensus        24 s~~~-la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~--~g~d~V~~~~g~p-   99 (332)
T 2z6i_A           24 ADGD-LAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIE--EGVKVVTTGAGNP-   99 (332)
T ss_dssp             CCHH-HHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHH--TTCSEEEECSSCG-
T ss_pred             CcHH-HHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHH--CCCCEEEECCCCh-
Confidence            3444 6777888898444443322223335667777764 3455665433 2233 33444443  5899998642221 


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                             .+.++.   +++.  ++++.+.= -+.+.+..+.++|+|.+++
T Consensus       100 -------~~~i~~---l~~~--g~~v~~~v-~~~~~a~~~~~~GaD~i~v  136 (332)
T 2z6i_A          100 -------SKYMER---FHEA--GIIVIPVV-PSVALAKRMEKIGADAVIA  136 (332)
T ss_dssp             -------GGTHHH---HHHT--TCEEEEEE-SSHHHHHHHHHTTCSCEEE
T ss_pred             -------HHHHHH---HHHc--CCeEEEEe-CCHHHHHHHHHcCCCEEEE
Confidence                   233444   4443  45555431 3467888899999999998

>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A

Probab=87.59  E-value=3.3  Score=29.84  Aligned_cols=102  Identities=14%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~  112 (157)
                      +...+.+.|..+. ..  .+..+.+..+.+  ..+|.|++-...|+..       .++-++++++..++.+|.+ .+--+
T Consensus        23 l~~~L~~~g~~v~-~~--~~~~~a~~~~~~--~~~dlvllD~~l~~~~-------g~~~~~~l~~~~~~~~ii~lt~~~~   90 (233)
T 1ys7_A           23 LERGLRLSGFEVA-TA--VDGAEALRSATE--NRPDAIVLDINMPVLD-------GVSVVTALRAMDNDVPVCVLSARSS   90 (233)
T ss_dssp             HHHHHHHTTCEEE-EE--SSHHHHHHHHHH--SCCSEEEEESSCSSSC-------HHHHHHHHHHTTCCCCEEEEECCCT
T ss_pred             HHHHHHhCCCEEE-EE--CCHHHHHHHHHh--CCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCEEEEEcCCC
Confidence            3444555677654 22  334444443332  4688887755556533       3556777777667777554 44455


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .+......++||+.++     .+.-++.+....++..++.
T Consensus        91 ~~~~~~~~~~ga~~~l-----~Kp~~~~~L~~~i~~~~~~  125 (233)
T 1ys7_A           91 VDDRVAGLEAGADDYL-----VKPFVLAELVARVKALLRR  125 (233)
T ss_dssp             TTCCCTTTTTTCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHHhh
Confidence            6777778899999874     4555777777777777664

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=87.57  E-value=8.1  Score=29.64  Aligned_cols=119  Identities=16%  Similarity=0.113  Sum_probs=71.9

Q ss_pred             HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHh---hHhcCCCCCeEEEEe---eeCCCCC
Q 031554            9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP---LVEGANPVEMVLVMT---VEPGFGG   82 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~---~~~~~~~~d~vl~m~---v~pG~~g   82 (157)
                      ++.+.+. +|++-+......+.  ..++++-+.|+-+++.-...-.++.+..   ++......+.+++..   ..+++  
T Consensus       100 ~~~l~~~-vd~~kIga~~~~n~--~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y--  174 (262)
T 1zco_A          100 VELVAKY-SDILQIGARNSQNF--ELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETA--  174 (262)
T ss_dssp             HHHHHHH-CSEEEECGGGTTCH--HHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCS--
T ss_pred             HHHHHhh-CCEEEECcccccCH--HHHHHHHhcCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCc--
Confidence            5666777 89999998766664  7788888889888887665523433222   222213345555541   22333  


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEE----cCCCH---hhHHHHHHcCCCEEEEccccc
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVD----GGLGP---STIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vd----GGI~~---~~i~~~~~~Gad~vV~GSai~  134 (157)
                       +...-.+..+..+++.. +++|.+|    +|.+.   .-....+..||+++++-+-+.
T Consensus       175 -~~~~v~L~ai~~lk~~~-~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~  231 (262)
T 1zco_A          175 -TRFTLDISAVPVVKELS-HLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPE  231 (262)
T ss_dssp             -SSSBCCTTHHHHHHHHB-SSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSS
T ss_pred             -ChhhcCHHHHHHHHhhh-CCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Confidence             22222345666677763 5666665    33332   335557889999999998753

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=87.56  E-value=1.1  Score=32.51  Aligned_cols=42  Identities=17%  Similarity=0.113  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCC--Hhh-HHHHHHcCCCEEEE
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLG--PST-IAEAASAGANCIVA  129 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~--~~~-i~~~~~~Gad~vV~  129 (157)
                      ...+-|+++|+..++.++.+|-++.  +++ ++.+.++|||++++
T Consensus        39 ~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~v   83 (207)
T 3ajx_A           39 EGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTV   83 (207)
T ss_dssp             HCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEE
T ss_pred             hCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEE
Confidence            3344567777776677777765544  355 77889999999875

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=87.51  E-value=1.8  Score=33.54  Aligned_cols=111  Identities=10%  Similarity=0.045  Sum_probs=65.6

Q ss_pred             ChHHHHHHHHhCCCCEEEEc----cc-------CCcchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554            4 NPLDYVEPLGKAGASGFTFH----VE-------ISKDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh----~e-------~~~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      .|.++++.+.+.|++++++-    .+       ..... .+.++.+++. +..+.+.+.+.+ .+.++.+.+  .++|.|
T Consensus        29 ~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~-~~~i~~i~~~~~~Pvi~~~~~~~-~~~~~~~~~--aGad~v  104 (297)
T 2zbt_A           29 TTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSD-PKIIKEIMAAVSIPVMAKVRIGH-FVEAMILEA--IGVDFI  104 (297)
T ss_dssp             SSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCC-HHHHHHHHTTCSSCEEEEEETTC-HHHHHHHHH--TTCSEE
T ss_pred             chHHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCC-HHHHHHHHHhcCCCeEEEeccCC-HHHHHHHHH--CCCCEE
Confidence            46788999999999999872    10       01112 4677788775 554444455554 556666655  589999


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                      . .+-.+     .. +..   ++.+++...++.+.+|- -+++.+....++|+|.+.+
T Consensus       105 ~-~~~~~-----~~-~~~---~~~~~~~~~~i~l~~~v-~~~~~~~~a~~~Gad~I~v  151 (297)
T 2zbt_A          105 D-ESEVL-----TP-ADE---EHHIDKWKFKVPFVCGA-RNLGEALRRIAEGAAMIRT  151 (297)
T ss_dssp             E-EETTS-----CC-SCS---SCCCCGGGCSSCEEEEE-SSHHHHHHHHHTTCSEEEE
T ss_pred             e-eeCCC-----Ch-HHH---HHHHHHhCCCceEEeec-CCHHHHHHHHHcCCCEEEE
Confidence            2 11111     00 111   12223322366676552 3677888889999999754

>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*

Probab=87.43  E-value=9  Score=33.13  Aligned_cols=139  Identities=12%  Similarity=0.067  Sum_probs=83.9

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCC--HHhHHhhHhcCCCCCeEEEE----eeeCCCC
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTS--VEEVYPLVEGANPVEMVLVM----TVEPGFG   81 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~--~~~~~~~~~~~~~~d~vl~m----~v~pG~~   81 (157)
                      .++...+.|+|+|.+..--..+.+.+.-+.+.++|..+.+.-.-+++  ++.+.+++   ...|.|++-    +++-|. 
T Consensus       198 dl~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~l~~~~~~i~IiaKIE~~eav~nldeIl---~~sDGImVARGDLgvei~~-  273 (606)
T 3t05_A          198 DIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIEEIL---EVSDGLMVARGDMGVEIPP-  273 (606)
T ss_dssp             HHHHHHHTTCSEEEETTCCSHHHHHHHHHHHHHTTCCCEEEECCCSHHHHHTHHHHH---HHCSCEEEEHHHHHHHSCG-
T ss_pred             HHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHhHHHHH---HhCCEEEEccccccCcCCH-
Confidence            45666889999999996655545467777788888888887555664  45678888   568988873    233221 


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEc----------CCCHhhH---HHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDG----------GLGPSTI---AEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdG----------GI~~~~i---~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                        ...+...+++-+..+. .+.++.+.-          =-|...+   ...+--|+|++.+..-=..-+-|.++++.|.+
T Consensus       274 --e~vp~~Qk~ii~~~~~-~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAv~dGaDavMLSgETA~G~yPveaV~~m~~  350 (606)
T 3t05_A          274 --EKVPMVQKDLIRQCNK-LGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRN  350 (606)
T ss_dssp             --GGHHHHHHHHHHHHHH-HTCCEEEESSSSGGGTTCSSCCHHHHHHHHHHHHHTCSEEEECHHHHSCSCSHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHH-cCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHcCCCEEEecccccCCCCHHHHHHHHHH
Confidence              1233344443333332 144554431          1233333   33444599999887322223567888888888


Q ss_pred             HHHHH
Q 031554          149 SVEDA  153 (157)
Q Consensus       149 ~~~~~  153 (157)
                      +.+.+
T Consensus       351 I~~~a  355 (606)
T 3t05_A          351 IAVSA  355 (606)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76643

>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A

Probab=87.43  E-value=4.9  Score=28.81  Aligned_cols=57  Identities=21%  Similarity=0.343  Sum_probs=37.7

Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEE-EEcCC-CHhhHHHHHHcCCCEEEEc
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIE-VDGGL-GPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~I~-vdGGI-~~~~i~~~~~~Gad~vV~G  130 (157)
                      .+|.|++-...|+..|       ++-++++|+.    .++++|. +.|-- +.+...+..++|++.++.=
T Consensus       119 ~~dlillD~~lp~~~G-------~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~K  181 (206)
T 3mm4_A          119 PFDYIFMDCQMPEMDG-------YEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDK  181 (206)
T ss_dssp             SCSEEEEESCCSSSCH-------HHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEET
T ss_pred             CCCEEEEcCCCCCCCH-------HHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcC
Confidence            5888887655676444       3444555543    4666655 44545 5688888999999988654

>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0

Probab=87.40  E-value=4.8  Score=26.81  Aligned_cols=72  Identities=13%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCc-EEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLD-IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~-I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~  142 (157)
                      ..+|.|++-...|+..       .++-++++|+  ..++.+ |.+.+.-+.+.+.+..++||+.++     .+.-++.+.
T Consensus        58 ~~~dliilD~~l~~~~-------g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l  125 (152)
T 3heb_A           58 GRAQLVLLDLNLPDMT-------GIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYI-----TKPVNYENF  125 (152)
T ss_dssp             TCBEEEEECSBCSSSB-------HHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEE-----ECCSSHHHH
T ss_pred             CCCCEEEEeCCCCCCc-------HHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEE-----eCCCCHHHH
Confidence            4678777654446533       3556677777  445665 455666667888889999999874     444466666


Q ss_pred             HHHHHHH
Q 031554          143 ISLMRKS  149 (157)
Q Consensus       143 ~~~l~~~  149 (157)
                      ...+++.
T Consensus       126 ~~~i~~~  132 (152)
T 3heb_A          126 ANAIRQL  132 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666654

>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}

Probab=87.32  E-value=4.8  Score=29.80  Aligned_cols=100  Identities=15%  Similarity=0.164  Sum_probs=61.9

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~  112 (157)
                      +...+.+.|..+..+   .+..+.+..+.+  ..+|.|++-...|+       ...++-++++++ .++.+|. +.+.-+
T Consensus        53 l~~~L~~~g~~v~~~---~~~~~al~~~~~--~~~DlvllD~~lp~-------~~G~~l~~~lr~-~~~~~iI~lt~~~~  119 (249)
T 3q9s_A           53 LRMDLTDAGYVVDHA---DSAMNGLIKARE--DHPDLILLDLGLPD-------FDGGDVVQRLRK-NSALPIIVLTARDT  119 (249)
T ss_dssp             HHHHHHTTTCEEEEE---SSHHHHHHHHHH--SCCSEEEEECCSCH-------HHHHHHHHHHHT-TCCCCEEEEESCCS
T ss_pred             HHHHHHHCCCEEEEe---CCHHHHHHHHhc--CCCCEEEEcCCCCC-------CCHHHHHHHHHc-CCCCCEEEEECCCC
Confidence            334455567644332   333444444332  46898887544454       235667777777 4666654 555556


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      .+.+.+..++||+.++     .+.-++.+....++..++
T Consensus       120 ~~~~~~a~~~Ga~~yl-----~Kp~~~~~L~~~i~~~l~  153 (249)
T 3q9s_A          120 VEEKVRLLGLGADDYL-----IKPFHPDELLARVKVQLR  153 (249)
T ss_dssp             HHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCcEEE-----ECCCCHHHHHHHHHHHHh
Confidence            7888899999999874     455577777777776654

>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A

Probab=87.31  E-value=1.9  Score=35.00  Aligned_cols=115  Identities=7%  Similarity=0.114  Sum_probs=71.6

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCC-------------------------cchHHHHHHHHHHc-C--CceEEEecCC
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEIS-------------------------KDNWQELVQRIKSK-G--MRPGVALKPG   52 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~-------------------------~~~~~~~i~~ir~~-g--~~~gl~l~~~   52 (157)
                      +|+...+   .+.+.|...+-+..-..                         +.. .+.++++|+. |  +.+.+..|-.
T Consensus       133 ~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d-~~~v~avR~a~G~d~~l~vDan~~  211 (401)
T 3sbf_A          133 TMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNT-LTMFKSLREKYGNQFHILHDVHER  211 (401)
T ss_dssp             SHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHH-HHHHHHHHHHHTTSSEEEEECTTC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHH-HHHHHHHHHHcCCCCEEEEECCCC
Confidence            4555554   45568999998864221                         122 4667788875 4  4556666766


Q ss_pred             CCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554           53 TSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV  128 (157)
Q Consensus        53 t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV  128 (157)
                      ...+...++++.+.  .++++          .|++.+..++-++++++. .+++|+.|+.+. .+.+.++++.| +|++.
T Consensus       212 ~~~~~A~~~~~~L~~~~i~~i----------EqP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~  280 (401)
T 3sbf_A          212 LFPNQAIQFAKEVEQYKPYFI----------EDILPPNQTEWLDNIRSQ-SSVSLGLGELFNNPEEWKSLIANRRIDFIR  280 (401)
T ss_dssp             SCHHHHHHHHHHHGGGCCSCE----------ECSSCTTCGGGHHHHHTT-CCCCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred             CCHHHHHHHHHHHHhcCCCEE----------ECCCChhHHHHHHHHHhh-CCCCEEeCCccCCHHHHHHHHhcCCCCEEe
Confidence            77766555432101  34444          244444445556677765 368999999998 68888888776 78775


Q ss_pred             Ec
Q 031554          129 AG  130 (157)
Q Consensus       129 ~G  130 (157)
                      +-
T Consensus       281 ~k  282 (401)
T 3sbf_A          281 CH  282 (401)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*

Probab=87.27  E-value=1.1  Score=36.71  Aligned_cols=87  Identities=13%  Similarity=0.039  Sum_probs=54.3

Q ss_pred             HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE
Q 031554           32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE  106 (157)
Q Consensus        32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~  106 (157)
                      .+.++++|+. |  +.+.+..|-....+...++++.+.  .++++     +     |++.+..++-.+++++. .+++|+
T Consensus       207 ~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i-----E-----qP~~~~d~~~~~~l~~~-~~iPIa  275 (418)
T 3r4e_A          207 PKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWL-----E-----DCTPAENQEAFRLVRQH-TVTPLA  275 (418)
T ss_dssp             HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE-----E-----SCSCCSSGGGGHHHHHH-CCSCEE
T ss_pred             HHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEE-----E-----CCCCccCHHHHHHHHhc-CCCCEE
Confidence            4667788875 4  455566676666665544432102  34444     2     33333334445666665 378999


Q ss_pred             EEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554          107 VDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus       107 vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                      .|+.+. .+.+.++++.| +|++.+
T Consensus       276 ~dE~~~~~~~~~~~l~~~a~d~v~~  300 (418)
T 3r4e_A          276 VGEIFNTIWDAKDLIQNQLIDYIRA  300 (418)
T ss_dssp             ECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred             EcCCcCCHHHHHHHHHcCCCCeEec
Confidence            999998 68899888876 787743

>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B

Probab=87.24  E-value=4.5  Score=26.40  Aligned_cols=73  Identities=14%  Similarity=0.159  Sum_probs=47.5

Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEE-EEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIE-VDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~-vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~  144 (157)
                      .+|.|++-...|+.+|       ++-++++++. .+..+|. +.+.-+.+...+..++||+.++     .+.-++.+...
T Consensus        52 ~~dlvllD~~mp~~~G-------~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l-----~KP~~~~~L~~  119 (133)
T 2r25_B           52 NYNMIFMDVQMPKVDG-------LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFL-----SKPIKRPKLKT  119 (133)
T ss_dssp             CCSEEEECSCCSSSCH-------HHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEE-----ESSCCHHHHHH
T ss_pred             CCCEEEEeCCCCCCCh-------HHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHH
Confidence            4788877555576554       4556666653 3455554 5555667888889999999874     44446666666


Q ss_pred             HHHHHHH
Q 031554          145 LMRKSVE  151 (157)
Q Consensus       145 ~l~~~~~  151 (157)
                      .+++.+.
T Consensus       120 ~l~~~~~  126 (133)
T 2r25_B          120 ILTEFCA  126 (133)
T ss_dssp             HHHHHCT
T ss_pred             HHHHHHH
Confidence            6666544

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=87.24  E-value=8.8  Score=29.73  Aligned_cols=118  Identities=18%  Similarity=0.137  Sum_probs=72.1

Q ss_pred             HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHH--hHHhhHhcCCCCCeEEEE-ee--eCCCCC
Q 031554            9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVE--EVYPLVEGANPVEMVLVM-TV--EPGFGG   82 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~--~~~~~~~~~~~~d~vl~m-~v--~pG~~g   82 (157)
                      ++.+.+. +|++-+......+.  ..++++-+.|+-+++.-... |.-+  .+.+++......+.+++. ++  .|++. 
T Consensus       115 ~~~l~~~-vd~~kIgs~~~~n~--~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~-  190 (276)
T 1vs1_A          115 VETVSRY-ADMLQIGARNMQNF--PLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPST-  190 (276)
T ss_dssp             HHHHHHH-CSEEEECGGGTTCH--HHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSS-
T ss_pred             HHHHHHh-CCeEEECcccccCH--HHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcC-
Confidence            4556666 89999998776664  78888888899888887665 3232  222222221345777766 44  24432 


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEc----CCC---HhhHHHHHHcCCCEEEEcccc
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDG----GLG---PSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdG----GI~---~~~i~~~~~~Gad~vV~GSai  133 (157)
                        ...-.+.-+..+++.. +++|.+|-    |.+   ..-....+..|||++++=+-+
T Consensus       191 --~~~vdl~~i~~lk~~~-~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~  245 (276)
T 1vs1_A          191 --RFTLDVAAVAVLKEAT-HLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP  245 (276)
T ss_dssp             --SSBCBHHHHHHHHHHB-SSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred             --cchhCHHHHHHHHHHh-CCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence              2223455567777753 56776652    433   222333477999999999875

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=87.22  E-value=4.3  Score=30.21  Aligned_cols=118  Identities=11%  Similarity=-0.027  Sum_probs=69.6

Q ss_pred             hHHHHHHHHhCC--CCEEEEcccCCc-chHHHHHHHHHHc--CCceEEEecCCCCHHh-HHhhHhcCCCCCeEEEEeeeC
Q 031554            5 PLDYVEPLGKAG--ASGFTFHVEISK-DNWQELVQRIKSK--GMRPGVALKPGTSVEE-VYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         5 p~~~i~~~~~~g--ad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~-~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      ..+-++.+.+.|  ++++.++.+... .- ...++.+|+.  |..+-+.+...+-.+. .+.+.+  .++|++.+   |.
T Consensus        17 ~~~a~~~~~~~~~~~~~ikvg~~lf~~~G-~~~v~~l~~~~p~~~iflDlKl~Dip~t~~~~~~~--~Gad~vtV---H~   90 (221)
T 3exr_A           17 LKGAITAAVSVGNEVDVIEAGTVCLLQVG-SELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAV--RGADWMTC---IC   90 (221)
T ss_dssp             HHHHHHHHHHHGGGCSEEEECHHHHHHHC-THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHT--TTCSEEEE---ET
T ss_pred             HHHHHHHHHhhCCCceEEEECHHHHHhcC-HHHHHHHHHhCCCCcEEEEEEeeccHHHHHHHHHH--cCCCEEEE---ec
Confidence            344444444444  888888854321 11 3678999987  7888887755544433 333333  47899866   43


Q ss_pred             CCCCcccchhHHHH-HHHHHhhC-CCCcEEEE--cCCCHhhHHHHHHcCCCEEEEcccc
Q 031554           79 GFGGQKFMPEMMDK-VRSLRNRY-PSLDIEVD--GGLGPSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        79 G~~gq~~~~~~~~k-i~~l~~~~-~~~~I~vd--GGI~~~~i~~~~~~Gad~vV~GSai  133 (157)
                       .+|.    .+++. ++.+++.. +...+.|+  ...+.+.+.++.+.|++-+|+..+.
T Consensus        91 -~~g~----~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~~~~~~~~~~~~v~~~a~  144 (221)
T 3exr_A           91 -SATI----PTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSR  144 (221)
T ss_dssp             -TSCH----HHHHHHHHHHHHHCTTTCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCH
T ss_pred             -cCCH----HHHHHHHHHHHhcCCCcceEEEEEcCCCCHHHHHHHHcCCHHHHHHHHHH
Confidence             3442    23333 33334443 22455555  4446788888888899988886443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=87.15  E-value=10  Score=30.88  Aligned_cols=103  Identities=11%  Similarity=0.115  Sum_probs=70.5

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhh-HhcCCCCCeEEEEeeeCCCCCccc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPL-VEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~-~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      ...+.+.+.|.+.+.+-.     . .+.++.+++.|..+  ...-.|..+.++.. +   ...|.|++.+-+        
T Consensus        18 ~va~~L~~~g~~vvvId~-----d-~~~v~~~~~~g~~v--i~GDat~~~~L~~agi---~~A~~viv~~~~--------   78 (413)
T 3l9w_A           18 ITGRLLLSSGVKMVVLDH-----D-PDHIETLRKFGMKV--FYGDATRMDLLESAGA---AKAEVLINAIDD--------   78 (413)
T ss_dssp             HHHHHHHHTTCCEEEEEC-----C-HHHHHHHHHTTCCC--EESCTTCHHHHHHTTT---TTCSEEEECCSS--------
T ss_pred             HHHHHHHHCCCCEEEEEC-----C-HHHHHHHHhCCCeE--EEcCCCCHHHHHhcCC---CccCEEEECCCC--------
Confidence            346778888988877742     2 46678888888763  33345666666655 4   688988764211        


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA  129 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~  129 (157)
                      ....+.-+..+|+++|+..|.+ =--+.++...+.++|||.+|.
T Consensus        79 ~~~n~~i~~~ar~~~p~~~Iia-ra~~~~~~~~L~~~Gad~Vi~  121 (413)
T 3l9w_A           79 PQTNLQLTEMVKEHFPHLQIIA-RARDVDHYIRLRQAGVEKPER  121 (413)
T ss_dssp             HHHHHHHHHHHHHHCTTCEEEE-EESSHHHHHHHHHTTCSSCEE
T ss_pred             hHHHHHHHHHHHHhCCCCeEEE-EECCHHHHHHHHHCCCCEEEC
Confidence            2345556777788888877654 334578999999999999884

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=87.12  E-value=2.7  Score=33.05  Aligned_cols=115  Identities=19%  Similarity=0.199  Sum_probs=67.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCC-----------cch---HHHHHHHHHHcCCceEEEecCCCC----------HHhHHhhH
Q 031554            7 DYVEPLGKAGASGFTFHVEIS-----------KDN---WQELVQRIKSKGMRPGVALKPGTS----------VEEVYPLV   62 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~-----------~~~---~~~~i~~ir~~g~~~gl~l~~~t~----------~~~~~~~~   62 (157)
                      +.+..+.++|++.|++-.-..           -.+   ..+-|+++++.+...++.++-.|+          +++.+.|.
T Consensus        98 ~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~  177 (295)
T 1xg4_A           98 RTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYV  177 (295)
T ss_dssp             HHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHH
Confidence            445667889999998853210           011   134566666665544455544443          34455666


Q ss_pred             hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE--EE-cCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE--VD-GGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~--vd-GGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      +  .++|.|.+    +|..    .   .+-++++.+.. ++|+.  +. ||-+ .-+..+|.+.|++.++.|.+.++
T Consensus       178 e--AGAd~i~~----e~~~----~---~~~~~~i~~~~-~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~~~  240 (295)
T 1xg4_A          178 E--AGAEMLFP----EAIT----E---LAMYRQFADAV-QVPILANITEFGATPLFTTDELRSAHVAMALYPLSAFR  240 (295)
T ss_dssp             H--TTCSEEEE----TTCC----S---HHHHHHHHHHH-CSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHHH
T ss_pred             H--cCCCEEEE----eCCC----C---HHHHHHHHHHc-CCCEEEEecccCCCCCCCHHHHHHcCCCEEEEChHHHH
Confidence            5  58999876    3321    1   22334444432 24442  22 5555 36789999999999999998875

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=87.11  E-value=8.1  Score=31.08  Aligned_cols=115  Identities=10%  Similarity=0.119  Sum_probs=71.2

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHH--hHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVE--EVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~--~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      -++.+.+.|+|.+=+..-...+  ..+|+++-+.|+-+-|.-.-.|--|  .+.+++.. .+.+++++.++. +|.. +.
T Consensus       116 svd~l~~~~v~~~KI~S~~~~n--~~LL~~va~~gkPviLstGmat~~Ei~~Ave~i~~-~G~~iiLlhc~s-~Yp~-~~  190 (349)
T 2wqp_A          116 AALRLQRMDIPAYKIGSGECNN--YPLIKLVASFGKPIILSTGMNSIESIKKSVEIIRE-AGVPYALLHCTN-IYPT-PY  190 (349)
T ss_dssp             HHHHHHHHTCSCEEECGGGTTC--HHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHH-HTCCEEEEECCC-CSSC-CG
T ss_pred             HHHHHHhcCCCEEEECcccccC--HHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEeccC-CCCC-Ch
Confidence            4566677788888888654444  5889999999988888876664333  22333322 233777765432 3332 33


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEc-CCCHhhHHHHHHcCCCEE
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCI  127 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdG-GI~~~~i~~~~~~Gad~v  127 (157)
                      ..-.+..|..+++.+++++|..=+ ..........+..|||+|
T Consensus       191 ~~~nL~ai~~lk~~f~~lpVg~sdHt~G~~~~~AAvAlGA~iI  233 (349)
T 2wqp_A          191 EDVRLGGMNDLSEAFPDAIIGLSDHTLDNYACLGAVALGGSIL  233 (349)
T ss_dssp             GGCCTHHHHHHHHHCTTSEEEEECCSSSSHHHHHHHHHTCCEE
T ss_pred             hhcCHHHHHHHHHHCCCCCEEeCCCCCcHHHHHHHHHhCCCEE
Confidence            344677788888887678874311 112344445578999944

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=86.98  E-value=5.3  Score=30.73  Aligned_cols=75  Identities=13%  Similarity=0.171  Sum_probs=49.5

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCc---chHHHHHHHHHHcCCceEEEecCCCC-----------HHhHHhhHhcCCCCCe
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISK---DNWQELVQRIKSKGMRPGVALKPGTS-----------VEEVYPLVEGANPVEM   70 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~---~~~~~~i~~ir~~g~~~gl~l~~~t~-----------~~~~~~~~~~~~~~d~   70 (157)
                      -..|++.+.+.|.|.|-+.--+.+   +...++|+.++++|.++--.+.-.++           ++.++..++  .++|+
T Consensus        87 ~~~yl~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~Le--AGA~~  164 (251)
T 1qwg_A           87 FDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLD--AGADY  164 (251)
T ss_dssp             HHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHH--HTCSE
T ss_pred             HHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHH--CCCcE
Confidence            467888889999999988843333   33366788888888887665644333           233444444  58888


Q ss_pred             EEEEeeeCCCC
Q 031554           71 VLVMTVEPGFG   81 (157)
Q Consensus        71 vl~m~v~pG~~   81 (157)
                      |++=+.+-|++
T Consensus       165 ViiEarEsG~~  175 (251)
T 1qwg_A          165 VIIEGRESGKG  175 (251)
T ss_dssp             EEECCTTTCCS
T ss_pred             EEEeeecccCC
Confidence            88766666654

>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A

Probab=86.95  E-value=6.5  Score=27.91  Aligned_cols=74  Identities=19%  Similarity=0.293  Sum_probs=50.0

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~  144 (157)
                      ..+|.|++-...|+.+|       ++-++++++..++.+|.+ .+.-+.+.+....++||+.++.     +.-++.+...
T Consensus        50 ~~~dlvllD~~lp~~~g-------~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~-----Kp~~~~~L~~  117 (215)
T 1a04_A           50 LDPDLILLDLNMPGMNG-------LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLL-----KDMEPEDLLK  117 (215)
T ss_dssp             HCCSEEEEETTSTTSCH-------HHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEE-----TTCCHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcH-------HHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHH
Confidence            35888887555566443       556777777777776554 4555678888999999998754     4446666666


Q ss_pred             HHHHHHH
Q 031554          145 LMRKSVE  151 (157)
Q Consensus       145 ~l~~~~~  151 (157)
                      .++..++
T Consensus       118 ~i~~~~~  124 (215)
T 1a04_A          118 ALHQAAA  124 (215)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            6666554

>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}

Probab=86.83  E-value=10  Score=30.17  Aligned_cols=116  Identities=14%  Similarity=0.133  Sum_probs=72.0

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCC--cchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcC--CCCCeEEEE
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEIS--KDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGA--NPVEMVLVM   74 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl~m   74 (157)
                      +|+..++   .+.+.|...+=+..-..  +.. .+.++++|+.  +....+..|-..+.+...++++.+  ...+...+ 
T Consensus       143 ~~e~~~~~a~~~~~~G~~~iK~Kvg~~~~~~d-~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~i~~i-  220 (365)
T 3ik4_A          143 DEVHAAASAKAILARGIKSIKVKTAGVDVAYD-LARLRAIHQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPMVLF-  220 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEEECCSSCHHHH-HHHHHHHHHHSSSCCEEEECTTCCCHHHHHHHHHHHHHTTCCEEEE-
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHH-HHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCceEE-
Confidence            5666554   44567999988876432  233 5677777875  455666677777777665555321  12222221 


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA  129 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~  129 (157)
                             .|++.+..++-.+++++.. +++|+.|-.+. ...+.++++.| +|++.+
T Consensus       221 -------EeP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a~d~v~i  269 (365)
T 3ik4_A          221 -------EQPLPREDWAGMAQVTAQS-GFAVAADESARSAHDVLRIAREGTASVINI  269 (365)
T ss_dssp             -------ECCSCTTCHHHHHHHHHHS-SSCEEESTTCSSHHHHHHHHHHTCCSEEEE
T ss_pred             -------ECCCCcccHHHHHHHHhhC-CCCEEECCCCCCHHHHHHHHHhCCCCEEEE
Confidence                   3455555566777777763 68899998877 67777766554 777754

>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*

Probab=86.76  E-value=7.2  Score=28.24  Aligned_cols=115  Identities=12%  Similarity=0.090  Sum_probs=67.4

Q ss_pred             hHHHHHHHHhC------CCCEEEEcc-cCCcch--HHHHHHHHHHcCCceEEEecCCC--CHHhHHhhHhcCCCCCeEEE
Q 031554            5 PLDYVEPLGKA------GASGFTFHV-EISKDN--WQELVQRIKSKGMRPGVALKPGT--SVEEVYPLVEGANPVEMVLV   73 (157)
Q Consensus         5 p~~~i~~~~~~------gad~v~vh~-e~~~~~--~~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~   73 (157)
                      ++.+++.+.+.      +...|++.. |..-++  +.++++.+++.|..+.+..|...  ..+.+..++   ..+|.|.+
T Consensus        52 ~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~~~~~~~~~l~---~~~~~v~i  128 (245)
T 3c8f_A           52 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELL---EVTDLVML  128 (245)
T ss_dssp             HHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHH---HTCSEEEE
T ss_pred             HHHHHHHHHHhhhhhcCCCCeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcCcCHHHHHHHH---HhCCEEEE
Confidence            44555555433      356777764 443332  36788999999998888777644  456677777   45787543


Q ss_pred             EeeeCCCC-------CcccchhHHHHHHHHHhhCCCCc--EEEEcCCC--HhhH----HHHHHcCC
Q 031554           74 MTVEPGFG-------GQKFMPEMMDKVRSLRNRYPSLD--IEVDGGLG--PSTI----AEAASAGA  124 (157)
Q Consensus        74 m~v~pG~~-------gq~~~~~~~~ki~~l~~~~~~~~--I~vdGGI~--~~~i----~~~~~~Ga  124 (157)
                       +++-+..       |..+ +..++.++.+++....+.  ..+..|.+  .+++    ..+.+.|+
T Consensus       129 -sld~~~~~~~~~~~~~~~-~~~~~~i~~l~~~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~  192 (245)
T 3c8f_A          129 -DLKQMNDEIHQNLVGVSN-HRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGN  192 (245)
T ss_dssp             -ECCCSSHHHHHHHHSSCS-HHHHHHHHHHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCC
T ss_pred             -eCCCCCHHHhhhccCCCH-HHHHHHHHHHHhcCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence             5552211       2233 556777888877654433  33556654  2444    34566775

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=86.63  E-value=10  Score=29.75  Aligned_cols=112  Identities=17%  Similarity=0.098  Sum_probs=68.4

Q ss_pred             ChHHHHHHHHhCCCCEEEEcc----c--CCcc-----hHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeE
Q 031554            4 NPLDYVEPLGKAGASGFTFHV----E--ISKD-----NWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~----e--~~~~-----~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~v   71 (157)
                      +|....+.+.++||+.++|.-    +  +...     . .+.++.+++.=-.+-+.. .... ++.++.+.+  .++|.|
T Consensus        29 ~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~-~~~i~~i~~~v~iPvl~k~~i~~-ide~qil~a--aGAD~I  104 (297)
T 4adt_A           29 KNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVD-PLKIEEIRKCISINVLAKVRIGH-FVEAQILEE--LKVDML  104 (297)
T ss_dssp             SSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCC-HHHHHHHHTTCCSEEEEEEETTC-HHHHHHHHH--TTCSEE
T ss_pred             CcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCC-HHHHHHHHHhcCCCEEEeccCCc-HHHHHHHHH--cCCCEE
Confidence            345678999999999999982    1  1111     3 689999998754555543 2233 655655554  699999


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      .   ...+..    .++   -++++++..++..+.++ =-+.+.+....+.|+|.+.+.
T Consensus       105 d---~s~~~~----~~~---li~~i~~~~~g~~vvv~-v~~~~Ea~~a~~~Gad~I~v~  152 (297)
T 4adt_A          105 D---ESEVLT----MAD---EYNHINKHKFKTPFVCG-CTNLGEALRRISEGASMIRTK  152 (297)
T ss_dssp             E---EETTSC----CSC---SSCCCCGGGCSSCEEEE-ESSHHHHHHHHHHTCSEEEEC
T ss_pred             E---cCCCCC----HHH---HHHHHHhcCCCCeEEEE-eCCHHHHHHHHhCCCCEEEEC
Confidence            2   111111    111   12333443346667664 345777888889999998776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d1h1ya_	220	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {R	1e-36
d1rpxa_	230	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P	8e-36
d1tqja_	221	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {S	2e-33
d2flia1	217	c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimera	5e-30
d1q6oa_	213	c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarbo	6e-30
d1tqxa_	221	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P	1e-26
d2czda1	206	c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decar	1e-06
d1km4a_	212	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	2e-05
d1dbta_	237	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	4e-04
d1o4ua1	170	c.1.17.1 (A:104-273) Quinolinic acid phosphoribosy	0.001

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} Length = 220

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

 Score =  123 bits (309), Expect = 1e-36
 Identities = 125/154 (81%), Positives = 140/154 (90%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MVTNP DYVEPL KAGASGFTFH+E+S+DNWQEL+Q IK+KGMRPGV+L+PGT VEEV+P
Sbjct: 67  MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFP 126

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
           LVE  NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPSLDIEVDGGLGPSTI  AA
Sbjct: 127 LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA 186

Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154
           SAGANCIVAGSS+FGA EP  VIS +RKSVE +Q
Sbjct: 187 SAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQ 220

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  121 bits (305), Expect = 8e-36
 Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 8/155 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
           M+  P   V    KAGA   + H E  S  +    + +IKS G + GV L PGT +  + 
Sbjct: 76  MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIE 135

Query: 60  PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR----SLRNRYPSLDIEVDGGLGPST 115
            +++    V++VL+M+V PGFGGQ F+   + K+         R  +  IEVDGG+GP  
Sbjct: 136 YVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKN 192

Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
             +   AGAN +VAGS+VFGAP+ A  I  ++ S 
Sbjct: 193 AYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSK 227

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 221

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

 Score =  115 bits (289), Expect = 2e-33
 Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDN-WQELVQRIKSKGMRPGVALKPGTSVEEVY 59
           M+  P  YVE   KAGA   + HVE +        + +I+  G + G  L P T ++ + 
Sbjct: 68  MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLE 127

Query: 60  PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS----LDIEVDGGLGPST 115
            ++      +++L+M+V PGFGGQ F+PE++ K+R+LR           IEVDGGL P+ 
Sbjct: 128 YVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNN 184

Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
             +   AGAN IVAGS+VF AP  A  I+ +R S 
Sbjct: 185 TWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSK 219

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Length = 217

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  106 bits (266), Expect = 5e-30
 Identities = 62/154 (40%), Positives = 88/154 (57%), Gaps = 8/154 (5%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           MV +P  YVE   +AGA   T H E ++      +Q+IK+ GM+ GV + PGT    + P
Sbjct: 67  MVVDPERYVEAFAQAGADIMTIHTESTRHIH-GALQKIKAAGMKAGVVINPGTPATALEP 125

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS----LRNRYPSLDIEVDGGLGPSTI 116
           L++    V+ VL+MTV PGFGGQ F+PE ++KV +       +  S DIEVDGG+   TI
Sbjct: 126 LLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTI 182

Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
                AGAN  VAGS +F A +    +  +R ++
Sbjct: 183 RACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 216

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

 Score =  106 bits (265), Expect = 6e-30
 Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 4/152 (2%)

Query: 1   MVTNPLDYVEPLGK-AGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
            + +    +  +   A A   T       +  +  +   K       + L    + E+  
Sbjct: 62  KIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQ 121

Query: 60  PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA 119
              + A   ++V   + +    G  +    +  ++ L        + V GGL    +   
Sbjct: 122 QWRD-AGIGQVVYHRSRDAQAAGVAWGEADITAIKRLS--DMGFKVTVTGGLALEDLPLF 178

Query: 120 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
                +  +AG S+  A  P       ++S+ 
Sbjct: 179 KGIPIHVFIAGRSIRDAASPVEAARQFKRSIA 210

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} Length = 221

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 98.0 bits (243), Expect = 1e-26
 Identities = 61/135 (45%), Positives = 89/135 (65%), Gaps = 4/135 (2%)

Query: 20  FTFHVEISKDNWQELV---QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV 76
            TFH E   ++ +  +   + I+   +  G+++KP T V+++ P+++  N +  VLVMTV
Sbjct: 86  LTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILD-TNLINTVLVMTV 144

Query: 77  EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136
           EPGFGGQ FM +MM KV  LR +Y +L+I+VDGGL   T   +AS GAN IVAG+S+F A
Sbjct: 145 EPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNA 204

Query: 137 PEPAHVISLMRKSVE 151
            +P +VI  MR SV+
Sbjct: 205 EDPKYVIDTMRVSVQ 219

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} Length = 206

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 66  NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAG 123
              +  + +  E    G        +++  +R+R       +  G+G       +A  AG
Sbjct: 119 PLTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAG 178

Query: 124 ANCIVAGSSVFGAPEPAHVISLMRKS 149
           A+ I+ G +++ AP P      +   
Sbjct: 179 ADYIIVGRAIYNAPNPREAAKAIYDE 204

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 212

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 5/151 (3%)

Query: 1   MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
           +            KAGA     H     D+ +  +   +  G      +   T +     
Sbjct: 66  IPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE----VFLLTEMSHPGA 121

Query: 61  LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST-IAEA 119
            +      + +  M V+ G           +++  LR         +  G+G        
Sbjct: 122 EMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGE 181

Query: 120 ASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
               A+ I+ G S++ A  PA   + + +S+
Sbjct: 182 TLRFADAIIVGRSIYLADNPAAAAAGIIESI 212

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} Length = 237

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 12/147 (8%)

Query: 17  ASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVE----EVYPLVEGANPVEMVL 72
           A+G    ++ + +  +E     K +     V     TS +    E+       + V    
Sbjct: 89  AAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYS 148

Query: 73  VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI--------EVDGGLGPSTIAEAASAGA 124
               E G  G          +    +                 +  +  +T A A   G+
Sbjct: 149 KQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGS 208

Query: 125 NCIVAGSSVFGAPEPAHVISLMRKSVE 151
           + IV G S+  A +P      +R   E
Sbjct: 209 SAIVVGRSITKAEDPVKAYKAVRLEWE 235

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 170

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 86  MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137
             E+ D  R +++  P++ +EV GG+    ++       + I +        
Sbjct: 109 PEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQEV 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	100.0
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	100.0
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	100.0
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	100.0
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	100.0
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	99.92
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	99.66
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	99.62
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	99.62
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	99.61
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	99.58
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	99.56
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.48
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	99.42
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.42
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.35
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.11
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	99.1
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	99.07
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.05
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.94
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	98.9
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	98.84
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	98.82
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	98.75
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	98.64
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	98.62
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	98.55
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	98.54
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	98.53
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	98.52
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	98.48
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	98.47
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	98.46
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	98.46
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	98.33
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	98.33
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	98.32
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	98.3
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	98.28
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	98.27
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	98.2
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	98.13
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	98.13
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	98.05
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	98.04
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	98.03
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	98.03
d1dqwa_	267	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.02
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	98.01
d1vqta1	198	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.95
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	97.92
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	97.86
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	97.86
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	97.81
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	97.81
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	97.78
d1piia1	198	N-(5'phosphoribosyl)antranilate isomerase, PRAI {E	97.78
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	97.78
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	97.77
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	97.75
d1nsja_	205	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	97.72
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	97.69
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	97.65
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	97.64
d1izca_	299	Macrophomate synthase {Macrophoma commelinae [TaxI	97.58
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	97.58
d1v5xa_	200	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	97.56
d2ffca1	332	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.47
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	97.47
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	97.45
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	97.4
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	97.36
d1dxea_	253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	97.33
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	97.27
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	97.19
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	97.18
d2fdsa1	324	Protozoan orotidine monophosphate decarboxylase {P	97.16
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	97.11
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	97.1
d2q8za1	323	Protozoan orotidine monophosphate decarboxylase {P	97.09
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	97.05
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	97.02
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	96.95
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	96.92
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	96.89
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	96.81
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	96.81
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	96.68
d2btma_	251	Triosephosphate isomerase {Bacillus stearothermoph	96.66
d1trea_	255	Triosephosphate isomerase {Escherichia coli [TaxId	96.65
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	96.63
d1r30a_	312	Biotin synthase {Escherichia coli [TaxId: 562]}	96.58
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	96.51
d1o5xa_	246	Triosephosphate isomerase {Plasmodium falciparum [	96.44
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	96.44
d1aw1a_	255	Triosephosphate isomerase {Vibrio marinus [TaxId:	96.35
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	96.3
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	96.29
d1m6ja_	260	Triosephosphate isomerase {Entamoeba histolytica [	96.28
d1r2ra_	246	Triosephosphate isomerase {Rabbit (Oryctolagus cun	96.27
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	96.21
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	96.19
d1n55a_	249	Triosephosphate isomerase {Leishmania mexicana [Ta	96.19
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	96.17
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	96.15
d1kv5a_	249	Triosephosphate isomerase {Trypanosoma brucei [Tax	96.15
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	96.06
d1mo0a_	257	Triosephosphate isomerase {Nematode (Caenorhabditi	96.03
d1b9ba_	252	Triosephosphate isomerase {Thermotoga maritima [Ta	96.02
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	95.96
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	95.94
d1neya_	247	Triosephosphate isomerase {Baker's yeast (Saccharo	95.92
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	95.91
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	95.83
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	95.79
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	95.75
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	95.62
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	95.61
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	95.53
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	95.53
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	95.48
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	95.42
d1tzza1	247	Hypothetical protein Bll6730 {Bradyrhizobium japon	95.4
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	95.39
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	95.31
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	95.08
d1wufa1	244	N-acylamino acid racemase {Listeria innocua [TaxId	95.03
d2chra1	244	Chlormuconate cycloisomerase {Alcaligenes eutrophu	94.99
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	94.85
d7reqb2	163	Methylmalonyl-CoA mutase beta subunit, C-terminal	94.68
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	94.47
d1nvma2	289	4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d	94.25
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	94.25
d1x7fa2	244	Outer surface protein, N-terminal domain {Bacillus	94.2
d1jpma1	234	L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId:	94.12
d3bula2	156	Methionine synthase, C-terminal domain {Escherichi	93.81
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	93.81
d1sjda1	242	N-acylamino acid racemase {Amycolatopsis sp. [TaxI	93.79
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	93.74
d1wuea1	241	N-acylamino acid racemase {Enterococcus faecalis [	93.62
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	93.44
d1pkla2	258	Pyruvate kinase, N-terminal domain {Leishmania mex	93.27
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	93.19
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	93.11
d1e0ta2	246	Pyruvate kinase, N-terminal domain {Escherichia co	92.9
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	92.85
d1s8na_	190	Probable two-component system transcriptional regu	92.73
d1yeya1	252	RTS beta protein {Xanthomonas campestris pv. campe	92.71
d1k66a_	149	Response regulator for cyanobacterial phytochrome	92.59
d1nu5a1	243	Chlormuconate cycloisomerase {Pseudomonas sp. p51	92.46
d1ykwa1	283	Ribulose 1,5-bisphosphate carboxylase-oxygenase {C	92.41
d1hl9a2	350	Putative alpha-L-fucosidase, catalytic domain {The	92.37
d2g50a2	282	Pyruvate kinase, N-terminal domain {Rabbit (Orycto	92.33
d1xrsb1	160	D-lysine 5,6-aminomutase beta subunit KamE, C-term	91.6
d2gdqa1	256	Hypothetical protein YitF {Bacillus subtilis [TaxI	91.55
d1a3xa2	265	Pyruvate kinase, N-terminal domain {Baker's yeast	90.97
d2mnra1	227	Mandelate racemase {Pseudomonas putida [TaxId: 303	90.81
d1ytda1	270	Nicotinate phosphoribosyltransferase Ta1145 {Therm	90.78
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	90.73
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	90.63
d1rvka1	255	Hypothetical protein Atu3453 {Agrobacterium tumefa	90.58
d1w25a2	153	Response regulator PleD, receiver domain {Caulobac	90.57
d2z06a1	252	Hypothetical protein TTHA0625 {Thermus thermophilu	90.53
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	90.45
d1muca1	242	Muconate-lactonizing enzyme {Pseudomonas putida [T	90.31
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	90.15
d1v5xa_	200	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	90.05
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	90.02
d2fywa1	265	Hypothetical protein SP1609 {Streptococcus pneumon	90.01
d1r0ma1	243	N-acylamino acid racemase {Deinococcus radiodurans	89.99
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	89.97
d2i14a1	279	Nicotinate-nucleotide pyrophosphorylase PF1904 {Py	89.35
d1b5ta_	275	Methylenetetrahydrofolate reductase {Escherichia c	89.23
d2gl5a1	278	Putative dehydratase protein STM2273 {Salmonella t	89.11
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	88.71
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	88.6
d1vlia2	295	Spore coat polysaccharide biosynthesis protein Sps	87.67
d1vpxa_	218	Decameric fructose-6-phosphate aldolase/transaldol	87.28
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	86.48
d1nmpa_	247	Hypothetical protein YbgI {Escherichia coli [TaxId	86.33
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	86.18
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	85.82
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	85.28
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	85.26
d1vkfa_	172	Glycerol uptake operon antiterminator-related prot	85.25
d2f7fa1	345	Putative nicotinate phosphoribosyltransferase EF26	85.14
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	84.75
d1t71a_	281	Hypothetical protein MPN349 {Mycoplasma pneumoniae	84.53
d2zdra2	280	Capsule biosynthesis protein SiaC, N-terminal doma	84.49
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	83.71
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	83.57
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	82.97
d1p1xa_	250	Deoxyribose-phosphate aldolase DeoC {Escherichia c	82.81
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	82.8
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	82.35
d1ceoa_	340	Endoglucanase CelC {Clostridium thermocellum [TaxI	82.22
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	82.09
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	81.89
d1t70a_	255	Putative phosphatase DR1281 {Deinococcus radiodura	81.6
d2basa1	261	Hypothetical protein YkuI, N-terminal domain {Baci	81.11
d5ruba1	320	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	80.93
d1wdda1	325	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	80.76
d1h7na_	340	5-aminolaevulinate dehydratase, ALAD (porphobilino	80.67
d1jpdx1	208	L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId:	80.36
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	80.35
d1v93a_	292	Methylenetetrahydrofolate reductase {Thermus therm	80.15
d1l6wa_	220	Decameric fructose-6-phosphate aldolase/transaldol	80.08

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=100.00  E-value=1.1e-42  Score=267.09  Aligned_cols=154  Identities=81%  Similarity=1.298  Sum_probs=145.1

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      |+.+|.+|++.+.++|+|.++||.|+..+...++++.+++.|+++|++++|+||++.+.++++..+.+|+|++|+++|||
T Consensus        67 Mv~~p~~~i~~~~~~g~~~I~~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v~PG~  146 (220)
T d1h1ya_          67 MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGF  146 (220)
T ss_dssp             ESSCGGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTC
T ss_pred             HhcchhhhhHHhhhcccceeeecccccchhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccceEEEEecCCCC
Confidence            89999999999999999999999998766448999999999999999999999999999988643578999999999999


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +||+|.+.+++||+++|+.++++.|+||||||.+|++.+.++|||.+|+||+||+++||.+++++||+.++.+|
T Consensus       147 ~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~~~i~~l~~aGad~~V~GS~if~~~d~~~~i~~lr~~~~~a~  220 (220)
T d1h1ya_         147 GGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQ  220 (220)
T ss_dssp             SSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHHHC-
T ss_pred             cccccchhhhHHHHHHHhcCCCceEEEEecCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998764

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=100.00  E-value=3.1e-42  Score=263.97  Aligned_cols=146  Identities=42%  Similarity=0.711  Sum_probs=141.3

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      |+.||++|++.+.++|||.|+||.|+..++ .+++++++++|+++|++++|+||++.+.+++   +.+|+|++|+++|||
T Consensus        67 Mv~~P~~~i~~~~~~ga~~i~~H~E~~~~~-~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l---~~id~vliM~V~pG~  142 (217)
T d2flia1          67 MVVDPERYVEAFAQAGADIMTIHTESTRHI-HGALQKIKAAGMKAGVVINPGTPATALEPLL---DLVDQVLIMTVNPGF  142 (217)
T ss_dssp             ESSSGGGGHHHHHHHTCSEEEEEGGGCSCH-HHHHHHHHHTTSEEEEEECTTSCGGGGGGGT---TTCSEEEEESSCTTC
T ss_pred             EecCHHHHHHHHHHcCCcEEEeccccccCH-HHHHHHHHhcCCeEEEEecCCcchhHHHhHH---hhcCEEEEEEEcCcc
Confidence            899999999999999999999999999988 9999999999999999999999999999999   899999999999999


Q ss_pred             CCcccchhHHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      +||+|.+..++|+++++++    +++++|+||||||.+|++.+.++|||.+|+||+||+++|+.+++++||+.+
T Consensus       143 ~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~~~i~~l~~aGad~~V~Gsaif~~~d~~~~i~~lr~~i  216 (217)
T d2flia1         143 GGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL  216 (217)
T ss_dssp             SSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHCCCCEEEEchHHhCCCCHHHHHHHHHHhh
Confidence            9999999999999999874    568999999999999999999999999999999999999999999999876

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=5.2e-42  Score=264.54  Aligned_cols=145  Identities=41%  Similarity=0.647  Sum_probs=137.8

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      |+.+|.+|++.+.++|+|.++||.|+.+  ++ .++++++|++|+++|+++||+||++.+.+|+   +.+|+|++|+|+|
T Consensus        76 Mv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~-~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l---~~vD~VllM~V~P  151 (230)
T d1rpxa_          76 MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHL-HRTINQIKSLGAKAGVVLNPGTPLTAIEYVL---DAVDLVLIMSVNP  151 (230)
T ss_dssp             ESSSHHHHHHHHHHTTCSEEEEECSTTTCSCH-HHHHHHHHHTTSEEEEEECTTCCGGGGTTTT---TTCSEEEEESSCT
T ss_pred             eecchhhhHHHHhhcccceeEEeccccccccH-HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH---hhCCEEEEEEecC
Confidence            8999999999999999999999999755  45 8999999999999999999999999999999   8999999999999


Q ss_pred             CCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           79 GFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      ||+||+|.+.+++||++++++    .+++.|+||||||.+|++.+.++|||.+|+||+||+++|+.+++++||+.
T Consensus       152 Gf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~~i~~l~~~Gad~~V~GS~if~~~d~~~~i~~lk~~  226 (230)
T d1rpxa_         152 GFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTS  226 (230)
T ss_dssp             TCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTC
T ss_pred             CcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCHHHHHHHHHcCCCEEEEChHHHCCCCHHHHHHHHHHh
Confidence            999999999999999998765    57899999999999999999999999999999999999999999999864

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=100.00  E-value=6.9e-41  Score=257.04  Aligned_cols=146  Identities=40%  Similarity=0.658  Sum_probs=133.5

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      |+.||++|++.+.++|+|.++||.|+... .+.+++++++++|+++|++++|+|+++.+.+|+   +.+|+|++|+++||
T Consensus        68 Mv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l---~~~d~vlvM~V~pG  144 (221)
T d1tqja_          68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVL---PVCDLILIMSVNPG  144 (221)
T ss_dssp             ESSSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTG---GGCSEEEEESSCC-
T ss_pred             EEeCHHHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHH---hhhcEEEEEEecCC
Confidence            89999999999999999999999996543 248999999999999999999999999999999   89999999999999


Q ss_pred             CCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           80 FGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      |+||+|.+.+++||++++++    .+++.|+||||||.+|++.+.++|||.+|+||+||+++||.+++++||+.
T Consensus       145 ~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~if~~~d~~~~i~~lr~~  218 (221)
T d1tqja_         145 FGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNS  218 (221)
T ss_dssp             ---CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTC
T ss_pred             CCCcccchhhHHHHHHHHhhhhccccceEEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHhc
Confidence            99999999999999998875    57899999999999999999999999999999999999999999999864

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=7.8e-41  Score=256.77  Aligned_cols=151  Identities=44%  Similarity=0.695  Sum_probs=140.6

Q ss_pred             CCcChHHHHHHHHhCCCCEEEEcccCCcch-HHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            1 MVTNPLDYVEPLGKAGASGFTFHVEISKDN-WQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~-~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      |+.||++|++.+.++|++.+++|.+..+.. ..+.++.++++|+++|++++|+||++.+.++++. ..+|+|++|+|+||
T Consensus        69 Mv~~P~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~~g~~~Gial~p~t~~~~~~~~l~~-~~~d~vlim~V~pG  147 (221)
T d1tqxa_          69 MVEYPEKYVPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPG  147 (221)
T ss_dssp             ESSCGGGGGGGCTTSSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTT
T ss_pred             HhhhhhhhhhhhhhcCceeEEeehhccccchhhHHHHHHHhcCCeEEEeeccccccccchhhccc-ccccEEEEEeeccc
Confidence            899999999999999999999987765431 2677899999999999999999999999999843 45999999999999


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      |+||+|.+.+++||+++|++.+++.|+||||||.+|++.+.++|||.+|+||+||+++||.+++++||+.+++
T Consensus       148 ~~GQ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn~~~i~~l~~aGad~iV~GS~if~~~d~~~~i~~Lr~~i~k  220 (221)
T d1tqxa_         148 FGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQK  220 (221)
T ss_dssp             CSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             ccccccCcchhHHHHHHHHhcCCcceEEEcccCHHhHHHHHHcCCCEEEEChHHHCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998875

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.6e-25  Score=165.34  Aligned_cols=148  Identities=13%  Similarity=0.097  Sum_probs=131.8

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE-EEEeeeCCCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV-LVMTVEPGFG   81 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v-l~m~v~pG~~   81 (157)
                      ..|..+.+.+.++|||++|+|.+...+.+...++.++++|.+.++.+.+.++.+...++.+.  .++.+ +.|+..||+.
T Consensus        65 d~~~~~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~  142 (213)
T d1q6oa_          65 DAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDA--GIGQVVYHRSRDAQAA  142 (213)
T ss_dssp             SCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHT--TCCEEEEECCHHHHHT
T ss_pred             cchHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecccCCCCCHHHHHHHHHh--HHHHHHHHHhcccCcC
Confidence            45777889999999999999999877766889999999999999999888998888777753  44544 5578889999


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +|.+.+..++++++.+..  ++++.+|||++.+|++++.++|||++|+||+||+++||.++++++++.+++.|
T Consensus       143 ~~~~~~~~l~~i~~~~~~--~~~i~~~gGi~~~~~~~~~~~Gad~iVVGr~I~~a~dp~~a~~~~~~~i~~~~  213 (213)
T d1q6oa_         143 GVAWGEADITAIKRLSDM--GFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELW  213 (213)
T ss_dssp             TCCCCHHHHHHHHHHHHT--TCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHHHC
T ss_pred             CeeCCHHHHHHHHHhhcc--CceEecCCCcCcCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHHHHHHHHhC
Confidence            999999999999888764  68899999999999999999999999999999999999999999999999877

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=99.66  E-value=5e-16  Score=116.31  Aligned_cols=136  Identities=17%  Similarity=0.150  Sum_probs=102.3

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP   87 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~   87 (157)
                      +++.+.+.|+|+||++.+.  .+ .... .....+...|.+.  ++..+......   .++||+.+..+.|..+-+...+
T Consensus        69 ~~~lA~~~~adGvHl~~~~--~~-~~~~-~~~~~~~iig~s~--h~~~e~~~a~~---~g~DYi~~gpvf~T~tk~~~~~  139 (206)
T d1xi3a_          69 RVDVALAVDADGVQLGPED--MP-IEVA-KEIAPNLIIGASV--YSLEEALEAEK---KGADYLGAGSVFPTKTKEDARV  139 (206)
T ss_dssp             CHHHHHHHTCSEEEECTTS--CC-HHHH-HHHCTTSEEEEEE--SSHHHHHHHHH---HTCSEEEEECSSCC----CCCC
T ss_pred             hHHHHHhccCceEeecccc--cc-Hhhh-hhccccccccccc--CCHHHHHHHHh---cCCCEEEecccccccccccccc
Confidence            5677888999999998764  33 2222 2223344445444  45444334443   5899999998877655444556


Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      -.++.++++.+.. ++++.+.||||.+|+.++.++|||++.++|+||+++||.++++++++++++.
T Consensus       140 ~g~~~l~~~~~~~-~~Pv~AiGGI~~~ni~~~~~~Ga~gvAvis~I~~~~dp~~~~~~l~~~~~~~  204 (206)
T d1xi3a_         140 IGLEGLRKIVESV-KIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEEV  204 (206)
T ss_dssp             CHHHHHHHHHHHC-SSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhc-CCCEEEECCCCHHHHHHHHHhCCCEEEEhHHHHCCCCHHHHHHHHHHHHHHh
Confidence            6788899988874 7899999999999999999999999999999999999999999999998875

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.62  E-value=5.8e-15  Score=114.29  Aligned_cols=140  Identities=15%  Similarity=0.274  Sum_probs=111.6

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC-cc-c
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG-QK-F   85 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g-q~-~   85 (157)
                      +++.|.++|+|.+.++-...++. .++.+.++++|+.....+.|.|+.++++.+.+.  .-.+|.+++.. |.+| +. +
T Consensus       109 ~~~~~~~~GvdG~IipDlp~eE~-~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~--a~gFvY~vs~~-GvTG~~~~~  184 (261)
T d1rd5a_         109 SLAKMKEAGVHGLIVPDLPYVAA-HSLWSEAKNNNLELVLLTTPAIPEDRMKEITKA--SEGFVYLVSVN-GVTGPRANV  184 (261)
T ss_dssp             CTHHHHHTTCCEEECTTCBTTTH-HHHHHHHHHTTCEECEEECTTSCHHHHHHHHHH--CCSCEEEECSS-CCBCTTSCB
T ss_pred             HHHHHHhcCceeeeecCccHHHH-HHHHHHHhccccceEEEeccCCchhHHHHHHhc--Ccchhhhhhcc-Ccccccccc
Confidence            57889999999999997777777 899999999999999999999999999999853  23445444554 4444 33 3


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC----CCCHHHHHHHHHHHHHH
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG----APEPAHVISLMRKSVED  152 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~----~~d~~~~~~~l~~~~~~  152 (157)
                      .++..+.++++|+.. +.+|+|.+||+ +++++.+.+.|||++|+||++.+    ..++++.++.+++.++.
T Consensus       185 ~~~~~~~i~~ik~~t-~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~i~~~~~~~~~~~~~~~~~~~  255 (261)
T d1rd5a_         185 NPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARG  255 (261)
T ss_dssp             CTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhhcc-CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455666899999885 89999999997 79999999999999999999874    34666666666665554

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.62  E-value=2.6e-15  Score=115.47  Aligned_cols=126  Identities=15%  Similarity=0.185  Sum_probs=104.0

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-   83 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-   83 (157)
                      .++|++.+.++|+|.+.++--..++. +++.+.++++|+.....+.|+|+.++++.+.   ...+.++++...+|.+|. 
T Consensus        97 ~~~f~~~~~~~Gv~GliipDLP~eE~-~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~---~~s~gFiY~vs~~GvTG~~  172 (248)
T d1geqa_          97 VRNFLAEAKASGVDGILVVDLPVFHA-KEFTEIAREEGIKTVFLAAPNTPDERLKVID---DMTTGFVYLVSLYGTTGAR  172 (248)
T ss_dssp             HHHHHHHHHHHTCCEEEETTCCGGGH-HHHHHHHHHHTCEEEEEECTTCCHHHHHHHH---HHCSSEEEEECCC------
T ss_pred             HHHHhhhhcccCeeEEeccCCcHHHH-HHHHhhccccCcceEEEecccchhHHHHHHH---hcCCCeEEEEecccccccc
Confidence            47899999999999999997777777 8899999999999999999999999999998   445666666566675553 


Q ss_pred             -ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           84 -KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        84 -~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                       .+.....+.++++|+. .+.+++|.+||+ +++++++.+.|||++|+||++.+
T Consensus       173 ~~~~~~~~~~v~~vk~~-t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~  225 (248)
T d1geqa_         173 EEIPKTAYDLLRRAKRI-CRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVK  225 (248)
T ss_dssp             -CCCHHHHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             hhhhhhHHHHHHHHhhh-cccceeeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence             2445567789999998 479999999996 79999999999999999999875

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=1e-14  Score=113.26  Aligned_cols=143  Identities=13%  Similarity=0.152  Sum_probs=114.1

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK   84 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~   84 (157)
                      .++|++.+.++|+|.+.++--..++. .++.+.++++|+.....+.|.|+.++++.+.+.   .+.+++.-..+|.+|..
T Consensus       111 ~~~f~~~~~~~Gv~GliipDlP~ee~-~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~---a~gFiY~vs~~GvTG~~  186 (267)
T d1qopa_         111 IDAFYARCEQVGVDSVLVADVPVEES-APFRQAALRHNIAPIFICPPNADDDLLRQVASY---GRGYTYLLSRSGVTGAE  186 (267)
T ss_dssp             HHHHHHHHHHHTCCEEEETTCCGGGC-HHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH---CCSCEEEESSSSCCCSS
T ss_pred             chHHHHHHHhcCCCceeccchhhhhh-HHHHHhhhccCceEEEEecccccHHHHHHHHhh---CchhhhhhcccccCCcc
Confidence            47899999999999999998777777 899999999999999999999999999999953   34444444445766544


Q ss_pred             c--chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC-----CCCHHHHHHHHHHHHHH
Q 031554           85 F--MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG-----APEPAHVISLMRKSVED  152 (157)
Q Consensus        85 ~--~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~-----~~d~~~~~~~l~~~~~~  152 (157)
                      -  ..+..+.++++|+.. +.+++|.+||+ ++++.+..++|||++|+||++.+     .+++.+.++.+++.+++
T Consensus       187 ~~~~~~~~~~i~~ik~~t-~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk~i~~~~~~~~~~~~~i~~~v~~  261 (267)
T d1qopa_         187 NRGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSA  261 (267)
T ss_dssp             SCC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHhhhc-cCCceeecccCCHHHHHHHHhcCCCEEEECHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            2  334566788888874 89999999999 68999988999999999999885     24666666766665554

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=1.5e-14  Score=112.30  Aligned_cols=139  Identities=22%  Similarity=0.340  Sum_probs=107.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEE-EeeeCCCCCc-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLV-MTVEPGFGGQ-   83 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~-m~v~pG~~gq-   83 (157)
                      ++|++.+.++|+|.+.++--..++. +++.+.++++|+.....+.|.|+.++++.+.+   ..+.+++ +++. |.+|. 
T Consensus       109 ~~F~~~~~~aGvdGliipDLP~ee~-~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~---~s~GFIY~Vs~~-GvTG~~  183 (271)
T d1ujpa_         109 ERFFGLFKQAGATGVILPDLPPDED-PGLVRLAQEIGLETVFLLAPTSTDARIATVVR---HATGFVYAVSVT-GVTGMR  183 (271)
T ss_dssp             HHHHHHHHHHTCCEEECTTCCGGGC-HHHHHHHHHHTCEEECEECTTCCHHHHHHHHT---TCCSCEEEECC--------
T ss_pred             hhHhHHHhhcCceeEeccchhhhhH-HHHHHHhhccccceeeccCCCcchHHHHHHHH---hCcchhhhhccc-CccCcc
Confidence            7899999999999999998877777 89999999999999999999999999999994   4444444 4554 55544 


Q ss_pred             -ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC----CCCHHHHHHHHHHHHHH
Q 031554           84 -KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG----APEPAHVISLMRKSVED  152 (157)
Q Consensus        84 -~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~----~~d~~~~~~~l~~~~~~  152 (157)
                       .+..+..+.++++|+. .+.+++|.+||+ ++++..+  ++||++|+||++.+    ..+....++++++.+++
T Consensus       184 ~~~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~i~e~~~~~~~~~~i~~~l~~  255 (271)
T d1ujpa_         184 ERLPEEVKDLVRRIKAR-TALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEEGRSLAPLLQEIRQGLQR  255 (271)
T ss_dssp             -----CCHHHHHHHHTT-CCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHTTCCHHHHHHHHHHHHBC
T ss_pred             ccchHHHHHHHHhhhcc-ccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence             3445567788998876 489999999999 6888764  59999999999874    35777778888877654

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.56  E-value=2.8e-14  Score=108.19  Aligned_cols=139  Identities=19%  Similarity=0.142  Sum_probs=102.4

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc-c
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-M   86 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-~   86 (157)
                      .++.+.+.|+|+||+.....  + ....+.... ...+|.++  ++..+......   .++|||.+..+.|...-... .
T Consensus        85 ~~~lA~~~~adGvHl~~~d~--~-~~~~r~~~~-~~iig~S~--h~~~e~~~a~~---~g~DYi~~gpvf~T~sK~~~~~  155 (226)
T d2tpsa_          85 DVELALNLKADGIHIGQEDA--N-AKEVRAAIG-DMILGVSA--HTMSEVKQAEE---DGADYVGLGPIYPTETKKDTRA  155 (226)
T ss_dssp             CHHHHHHHTCSEEEECTTSS--C-HHHHHHHHT-TSEEEEEE--CSHHHHHHHHH---HTCSEEEECCSSCCCSSSSCCC
T ss_pred             CHHHHhhccCCEEEeccccc--h-hhhhhhccc-ceeeeeec--cchHHHHHHHh---CcCCeEEEeccccccccccccc
Confidence            46778888999999987643  3 334444433 34456666  45444444444   57999999877654332221 2


Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554           87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~  155 (157)
                      +...+.++.+++...++++.+-||||++|+.++.++|+|++.+.|+||+++||.+++++|++.++..++
T Consensus       156 ~~~~~~~~~~~~~~~~~Pv~AiGGI~~~ni~~l~~~Ga~giAvis~I~~a~dp~~~~~~~~~~~~~~k~  224 (226)
T d2tpsa_         156 VQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYKT  224 (226)
T ss_dssp             CCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHhcCCCCEEEecCCCHHHHHHHHHhCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHHHc
Confidence            234555666666556889999999999999999999999999999999999999999999999988765

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=1.1e-14  Score=108.75  Aligned_cols=136  Identities=20%  Similarity=0.261  Sum_probs=87.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE-ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK   84 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~   84 (157)
                      ..+++.++++|+|++|+|..+.    .+.++.+++.+....+. ++..+..+...++.      +.++-+..+++..|.-
T Consensus        68 ~~~~~~~~~~gad~~Tvh~~~g----~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~------~~~~~~a~~~~~~g~~  137 (206)
T d2czda1          68 RLIARKVFGAGADYVIVHTFVG----RDSVMAVKELGEIIMVVEMSHPGALEFINPLT------DRFIEVANEIEPFGVI  137 (206)
T ss_dssp             HHHHHHHHHTTCSEEEEESTTC----HHHHHHHHTTSEEEEECCCCSGGGGTTTGGGH------HHHHHHHHHHCCSEEE
T ss_pred             hheehhhccccccEEEeeeccc----HHHHHHhhhcccceEEEeccCCcccccccHHH------HHHHHHHHhccccccc
Confidence            5678889999999999998653    46777888887666654 33222222111111      1111222222222222


Q ss_pred             cchhHHHHHHHHHhhC-CCCcEEEEc-CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554           85 FMPEMMDKVRSLRNRY-PSLDIEVDG-GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus        85 ~~~~~~~ki~~l~~~~-~~~~I~vdG-GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      ......+.++.+|+.. +++.+.+.| |....+..+.+++|||.+|+||+|++++||.++++++++.++
T Consensus       138 ~~~~~~~~~~~~r~~~~~~~~i~~pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~aa~~i~~~ik  206 (206)
T d2czda1         138 APGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR  206 (206)
T ss_dssp             CCCSSTHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHC
T ss_pred             ccccCchhhhhhhhhhcccceEECCCccccCCCHHHHHHhCCCEEEEChhhccCCCHHHHHHHHHHHhC
Confidence            2112223455566654 456665655 555578999999999999999999999999999999998764

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=99.42  E-value=3e-12  Score=96.73  Aligned_cols=141  Identities=19%  Similarity=0.235  Sum_probs=107.3

Q ss_pred             HHHHHhCCCCEEEEc-ccC--CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            9 VEPLGKAGASGFTFH-VEI--SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         9 i~~~~~~gad~v~vh-~e~--~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      .+++.++|++++.+. .|-  ..+.+.+.+++++++|+.+.+-+  .++.+..+...   ...++|.+..+.+..+|+..
T Consensus        78 ~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~gl~~ivcv--ge~~~~~~~~~---~~~~iIayep~waIGtg~~~  152 (226)
T d1w0ma_          78 LENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCA--PDPRTSLAAAA---LGPHAVAVEPPELIGTGRAV  152 (226)
T ss_dssp             HHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHH---TCCSEEEECCGGGTTTSCCH
T ss_pred             HhhhcccccceEEeechhhhhhccchHHHHHHHHHcCCEEEEec--CchHHhhhhhc---cccceeeecchhhccCCCCC
Confidence            467889999999994 442  12233788889999999988866  45555554444   57899999888877777766


Q ss_pred             chhHHH----HHHHHHhhCCCCcEEEEcCCCHhh-HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           86 MPEMMD----KVRSLRNRYPSLDIEVDGGLGPST-IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        86 ~~~~~~----ki~~l~~~~~~~~I~vdGGI~~~~-i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      .+...+    .++.+++..++++|.++|||+.+| ...+.+.|+|++.+|||+++++||...+.+|.+.+...|
T Consensus       153 ~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~d~~~~i~~l~~~~~~~r  226 (226)
T d1w0ma_         153 SRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSELR  226 (226)
T ss_dssp             HHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHHHHC-
T ss_pred             ChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheecCCCHHHHHHHHHHHHHhcC
Confidence            554333    345555566889999999999755 567889999999999999999999999999988887654

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.42  E-value=3.3e-14  Score=106.66  Aligned_cols=136  Identities=17%  Similarity=0.125  Sum_probs=95.3

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---HHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---VYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      ..+++.++++|+|++|+|..+..+.+..+++..++++..+-+.. .-++...   ...+      .+.+.-|+.+.|..|
T Consensus        71 ~~~~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~-~~s~~~~~~~~~~~------~~~~~~~~~~~g~~g  143 (212)
T d1km4a_          71 EKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLT-EMSHPGAEMFIQGA------ADEIARMGVDLGVKN  143 (212)
T ss_dssp             HHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEEC-SCSSGGGGTTHHHH------HHHHHHHHHHHTCCE
T ss_pred             HHhHhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccch-hhcchhhhhhhhhH------HHHHHHHHHHhCCcc
Confidence            45678889999999999999988887888888898887654432 2232221   1111      222333455666666


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEcCCCHh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~--~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      +-......+.++++|+..++-.+.+.+||+.+  +..+. ..|||++|+||+|++++||.++++++++.
T Consensus       144 ~v~~~~~~~~i~~ir~~~~~~~~~vtpGI~~~g~~~~d~-~~~ad~iIvGR~I~~a~dP~~aa~~i~~~  211 (212)
T d1km4a_         144 YVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGET-LRFADAIIVGRSIYLADNPAAAAAGIIES  211 (212)
T ss_dssp             EECCTTCHHHHHHHHHHHCSSSEEEECCBSTTSBCHHHH-TTTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred             ccccccCHHHHhhhhhccCCceeEEcCccccCCCCHHHH-HhhCCEEEECchhccCCCHHHHHHHHHHh
Confidence            65444445566777776555556699999874  33333 36899999999999999999999999875

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.35  E-value=1.2e-11  Score=91.79  Aligned_cols=138  Identities=13%  Similarity=0.170  Sum_probs=102.6

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCC---cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            5 PLDYVEPLGKAGASGFTFHVEIS---KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~---~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      ...+.+.+.++|+|.+.++....   ...+.+.++.+++++..+-+..++.|..+......   ..+|+|.+....-+..
T Consensus        77 ~~~~~~~~~~agad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~---~g~d~i~~~~~~~~~~  153 (222)
T d1y0ea_          77 TSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAAR---LGFDYIGTTLHGYTSY  153 (222)
T ss_dssp             SHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSTT
T ss_pred             cHHHHHhHHHcCCCEEEeeccccccccchHHHHHHHHHHhCCceEEeecCCCHHHHHHHHH---cCCCeEEEeccCCccc
Confidence            35567788889999999975332   23337899999999988888888888877766666   7899986532211111


Q ss_pred             --CcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           82 --GQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        82 --gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                        +.......++.++++++.. +++|.++||| +.+++.++.++|||++++||+|.   +|.+..+++-+.
T Consensus       154 ~~~~~~~~~~~~~i~~~~~~~-~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~---rp~~~~~~f~~~  220 (222)
T d1y0ea_         154 TQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT---RPKEITKRFVQV  220 (222)
T ss_dssp             STTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH---CHHHHHHHHHHT
T ss_pred             ccCccchhhHHHHHHHHHhcC-CCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhc---CHHHHHHHHHHH
Confidence              2222334567788887764 7999999999 58999999999999999999998   477777776544

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.11  E-value=7.4e-10  Score=82.36  Aligned_cols=136  Identities=11%  Similarity=0.110  Sum_probs=88.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC-----cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS-----KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~-----~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      ......+..+|+|.+.++....     ... .+.++.++......-+..+..|+.+......   .++|+|.+.+...+.
T Consensus        88 ~~~~~~~~~~gad~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~---~Gad~i~~~~~~~~~  163 (230)
T d1yxya1          88 MTEVDQLAALNIAVIAMDCTKRDRHDGLDI-ASFIRQVKEKYPNQLLMADISTFDEGLVAHQ---AGIDFVGTTLSGYTP  163 (230)
T ss_dssp             HHHHHHHHTTTCSEEEEECCSSCCTTCCCH-HHHHHHHHHHCTTCEEEEECSSHHHHHHHHH---TTCSEEECTTTTSST
T ss_pred             HHHHHHHHhcCCCEEEEecccccccchhhH-HHHHHHHHhcCCCceEecCCCCHHHHHHHHh---cCCCEEEeecccccc
Confidence            3567788899999998874322     223 6778888777544444445566655544444   689988654332221


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      .+....+..+ .+.+.+.. .++++.++||| |++++.++.++|||+|++||+|+   +|....++|.+.+
T Consensus       164 ~~~~~~~~~~-~~~~~~~~-~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~---~p~~i~~~~~~~~  229 (230)
T d1yxya1         164 YSRQEAGPDV-ALIEALCK-AGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT---RPKEIAERFIEAL  229 (230)
T ss_dssp             TSCCSSSCCH-HHHHHHHH-TTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH---CHHHHHHHHHHHT
T ss_pred             cccccchHHH-HHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhc---CHHHHHHHHHHHh
Confidence            1211122222 23333333 47999999999 58999999999999999999998   4666666665543

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=1.2e-09  Score=81.04  Aligned_cols=129  Identities=20%  Similarity=0.190  Sum_probs=96.1

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      .+++ .++.+.++||+++.-+.    -. .+++++++++|+.+..-+  .||-|..+.+-   .+.|++=+   .|+   
T Consensus        70 ~~~~-~~~~a~~aGa~fivsP~----~~-~~v~~~~~~~~i~~iPGv--~TpsEi~~A~~---~G~~~lK~---fPa---  132 (202)
T d1wa3a1          70 TSVE-QCRKAVESGAEFIVSPH----LD-EEISQFCKEKGVFYMPGV--MTPTELVKAMK---LGHTILKL---FPG---  132 (202)
T ss_dssp             CSHH-HHHHHHHHTCSEEECSS----CC-HHHHHHHHHHTCEEECEE--CSHHHHHHHHH---TTCCEEEE---TTH---
T ss_pred             ccHH-HHHHHHhhcccEEeCCC----Cc-HHHHHHHHhcCCceeCCc--CcHHHHHHHHH---CCCCEEEe---cch---
Confidence            3444 57788999999886332    23 689999999998766555  46666666666   78888855   453   


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +.   ...+.++.++.-+|++++...|||+.+|+.++.++|+..+.+||++++ .|+.+-.+..++.++.
T Consensus       133 ~~---~G~~~lk~l~~p~p~i~~iptGGI~~~n~~~~l~aga~avg~Gs~l~~-~~~~~i~~~a~~~~~~  198 (202)
T d1wa3a1         133 EV---VGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK-GTPDEVREKAKAFVEK  198 (202)
T ss_dssp             HH---HHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHC-SCHHHHHHHHHHHHHH
T ss_pred             hh---cCHHHHHHHhCcccCCcEEeeCCCCHHHHHHHHHCCCeEEEEchhhcC-CCHHHHHHHHHHHHHH
Confidence            11   123578888888899999999999999999999999999999999996 5666555555554443

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=99.07  E-value=3.5e-09  Score=79.27  Aligned_cols=133  Identities=19%  Similarity=0.233  Sum_probs=93.8

Q ss_pred             HHHHHhCCCCEEEEc-ccCC---cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-CCCCc
Q 031554            9 VEPLGKAGASGFTFH-VEIS---KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP-GFGGQ   83 (157)
Q Consensus         9 i~~~~~~gad~v~vh-~e~~---~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-G~~gq   83 (157)
                      .+++.+.|++++.+. .|--   .+. .+.++.+++.|+.+.+-+.  ++.+. +.+..  ...+.|.+..+.. |++ .
T Consensus        80 ~~~l~~~g~~~~iiGHSErr~~~~e~-~~~i~~~~~~gl~~i~cv~--~~~~~-~~~~~--~~~~iiAyEpvwaIGtg-~  152 (224)
T d1hg3a_          80 PEAVKEAGAVGTLLNHSENRMILADL-EAAIRRAEEVGLMTMVCSN--NPAVS-AAVAA--LNPDYVAVEPPELIGTG-I  152 (224)
T ss_dssp             HHHHHHTTCCEEEESCGGGCCBHHHH-HHHHHHHHHHTCEEEEEES--SHHHH-HHHHT--TCCSEEEECCTTTTTTS-C
T ss_pred             hhhccccCcceeeeccccccccccch-hHHHHHHHHcCCceeechh--hHHHH-Hhhhh--cccceEEecchHhhccc-c
Confidence            357889999999884 3321   233 6788889999998877764  33332 22221  3556666654433 433 2


Q ss_pred             cc----chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           84 KF----MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        84 ~~----~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      ..    .+.....++.+++..++++|..+|||+ .+....+...|+|++.+||++++++||.+.+++|-+
T Consensus       153 ~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d~~~~~~~l~~  222 (224)
T d1hg3a_         153 PVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVS  222 (224)
T ss_dssp             CTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHH
T ss_pred             CCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcCHHHHHHHHHh
Confidence            22    233445566677777889999999998 577788899999999999999999999999888754

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.2e-11  Score=93.59  Aligned_cols=140  Identities=16%  Similarity=0.160  Sum_probs=83.5

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCc----eEEEecCCCCHHhHHhhHhcCCCCC-eEE---EEeeeC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMR----PGVALKPGTSVEEVYPLVEGANPVE-MVL---VMTVEP   78 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~----~gl~l~~~t~~~~~~~~~~~~~~~d-~vl---~m~v~p   78 (157)
                      ..++.+.+.|+|++|+|.-...+.+....+..++.|..    .++....+.+.+........ ...+ .+.   -+....
T Consensus        72 ~~~~~~~~~~~~~~tvh~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~~ts~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~  150 (231)
T d1eixa_          72 HAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMT-LSPADYAERLAALTQKC  150 (231)
T ss_dssp             HHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTCC-SCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhcccceEEEEeccCcHHHHHHHHHhhhhcCccceEEEEEeeccccccchhcccccc-cchhHHHHHHHHHHHHh
Confidence            46778889999999999988776656666666665543    24444333333333221100 0000 000   000111


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      |..|.--.+...   +.+++....-.+.+..||+++           |..+.+++|||.+|+||+|++++||.+++++++
T Consensus       151 ~~~~~~~~~~~~---~~~~~~~~~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iIVGR~It~a~dP~~aa~~i~  227 (231)
T d1eixa_         151 GLDGVVCSAQEA---VRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAIN  227 (231)
T ss_dssp             TCSEEECCGGGH---HHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHH
T ss_pred             ccccccccchhh---hhhhhhcCCccceecCCcccCCCCccCccccCCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHH
Confidence            222211122223   333333334457788888764           466788999999999999999999999999998


Q ss_pred             HHH
Q 031554          148 KSV  150 (157)
Q Consensus       148 ~~~  150 (157)
                      +.+
T Consensus       228 ~~i  230 (231)
T d1eixa_         228 ASL  230 (231)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            875

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=2.5e-10  Score=86.50  Aligned_cols=142  Identities=20%  Similarity=0.204  Sum_probs=83.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC----c---eEEEecCCCCHHhHHhhH-hcCCCCCeEEEEe---
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM----R---PGVALKPGTSVEEVYPLV-EGANPVEMVLVMT---   75 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~----~---~gl~l~~~t~~~~~~~~~-~~~~~~d~vl~m~---   75 (157)
                      ..+..+.+.|+|++|+|.-.....+....+.+++...    .   .+++.-.+..-+.....+ ......+.|+-+.   
T Consensus        72 ~~~~~~~~~~~d~vtvh~~~G~~~i~aa~~~~~~~~~~~~~~~~l~~v~~lts~~~~~~~~~~~~~~~~~~~v~~~~~~~  151 (237)
T d1dbta_          72 KAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQA  151 (237)
T ss_dssp             HHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBCSCHHHHHHHHHHHH
T ss_pred             HHHHhhhccccceEEeecccchHHHHHHHHhhhhcchhccccceeEEEecccccchHHHHhhhhhhcccchhhHHHHHhh
Confidence            3455667889999999988777765667777766421    2   233333333333222111 0000001111000   


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~d~~~~~~  144 (157)
                      .+-|..|.-..+.   .+..+|+...+-.+.+..||+++           |..+..++|||++|+||+|++++||.++++
T Consensus       152 ~~~g~~g~v~s~~---~~~~~r~~~~~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iIVGR~I~~s~dP~~aa~  228 (237)
T d1dbta_         152 EESGLDGVVCSVH---EAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYK  228 (237)
T ss_dssp             HHTTCSEEECCGG---GHHHHTTTSCTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSCHHHHHH
T ss_pred             hhcCcceeecchh---hhhhhccccccceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEEEECCcccCCCCHHHHHH
Confidence            0112222221222   24445554444445688888764           467889999999999999999999999999


Q ss_pred             HHHHHHH
Q 031554          145 LMRKSVE  151 (157)
Q Consensus       145 ~l~~~~~  151 (157)
                      ++++.++
T Consensus       229 ~i~~~ie  235 (237)
T d1dbta_         229 AVRLEWE  235 (237)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9998875

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=2.9e-09  Score=76.84  Aligned_cols=93  Identities=17%  Similarity=0.233  Sum_probs=70.6

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdGG  110 (157)
                      ...++.+|+.....-+.+..++..+..+.+.   .++|.|++-         .|.|+.+++ ++.+++..+.+.+++-||
T Consensus        67 ~~~i~~~k~~~~~~~I~VEv~s~~q~~~a~~---~~~diImLD---------N~sp~~~k~~v~~~~~~~~~i~lEaSGg  134 (169)
T d1qpoa1          67 VDALRAVRNAAPDLPCEVEVDSLEQLDAVLP---EKPELILLD---------NFAVWQTQTAVQRRDSRAPTVMLESSGG  134 (169)
T ss_dssp             HHHHHHHHHHCTTSCEEEEESSHHHHHHHGG---GCCSEEEEE---------TCCHHHHHHHHHHHHHHCTTCEEEEESS
T ss_pred             hhhhhhhhhhcCCCceEEEeccHHHhhhhhh---cCCcEEEec---------CcChHhHHHHHHHhhccCCeeEEEEeCC
Confidence            7788888887665555555455555444444   689999985         244454444 666677778899999999


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ||.+|++++.+.|+|.+++|+..+++
T Consensus       135 I~~~ni~~ya~~GvD~IS~galt~sa  160 (169)
T d1qpoa1         135 LSLQTAATYAETGVDYLAVGALTHSV  160 (169)
T ss_dssp             CCTTTHHHHHHTTCSEEECGGGTSSB
T ss_pred             CCHHHHHHHHHcCCCEEECCccccCC
Confidence            99999999999999999999876654

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=98.84  E-value=5.7e-08  Score=72.23  Aligned_cols=129  Identities=16%  Similarity=0.132  Sum_probs=97.1

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +++ .++.+.++||+++.-+.-    . .++++.++++++-..--+  .||-|....+-   .+.|.|=+   .|...  
T Consensus        75 ~~~-~~~~a~~aGa~FivSP~~----~-~~v~~~a~~~~i~~iPGv--~TpsEi~~A~~---~G~~~vK~---FPA~~--  138 (212)
T d1vhca_          75 TAE-QVVLAKSSGADFVVTPGL----N-PKIVKLCQDLNFPITPGV--NNPMAIEIALE---MGISAVKF---FPAEA--  138 (212)
T ss_dssp             SHH-HHHHHHHHTCSEEECSSC----C-HHHHHHHHHTTCCEECEE--CSHHHHHHHHH---TTCCEEEE---TTTTT--
T ss_pred             cHH-HHHHHHhhCCcEEECCCC----C-HHHHHHHHhcCCCccCCc--CCHHHHHHHHH---CCCCEEEE---ccccc--
Confidence            344 567888999999887743    2 689999999988765555  46777777676   78888865   47421  


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC-----CCCHHHHHHHHHHHHH
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG-----APEPAHVISLMRKSVE  151 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~-----~~d~~~~~~~l~~~~~  151 (157)
                         -...+.++.++.-+|++++...|||+.+|+.++.++|+-+++.||.+|.     ..|+.+-.+..++.++
T Consensus       139 ---~gG~~~lkal~~p~p~~~~~ptGGV~~~N~~~yl~~g~v~~~~Gs~l~~~~~i~~~d~~~i~~~a~~~~~  208 (212)
T d1vhca_         139 ---SGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREVID  208 (212)
T ss_dssp             ---TTHHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGCHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---cchHHHHHHHhccccCCeEEecCCCCHHHHHHHHhCCCEEEEEChhhCCHHHHhcCCHHHHHHHHHHHHH
Confidence               0135578888888899999999999999999999999999999999985     3566655555555444

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=6.6e-08  Score=71.93  Aligned_cols=126  Identities=13%  Similarity=0.137  Sum_probs=95.6

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP   87 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~   87 (157)
                      .++.+.++||+++.-+.-   +  .+++++++++|+-..--+  .||-|....+-   .+.+.+=+   .|...-     
T Consensus        79 ~~~~a~~aGa~FivSP~~---~--~~v~~~a~~~~i~~iPGv--~TpsEi~~A~~---~G~~~vKl---FPA~~~-----  140 (213)
T d1wbha1          79 QLAEVTEAGAQFAISPGL---T--EPLLKAATEGTIPLIPGI--STVSELMLGMD---YGLKEFKF---FPAEAN-----  140 (213)
T ss_dssp             HHHHHHHHTCSCEEESSC---C--HHHHHHHHHSSSCEEEEE--SSHHHHHHHHH---TTCCEEEE---TTTTTT-----
T ss_pred             HHHHHHHCCCcEEECCCC---C--HHHHHHHHhcCCCccCCc--CCHHHHHHHHH---CCCCEEEe---ccchhc-----
Confidence            567889999999887753   2  689999999998766655  46666666666   68888855   464210     


Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHHHH
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKSVE  151 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~  151 (157)
                      ...+.++.++.-+|+.++...|||+.+|+.++.++|+..++.||.+|..     .|+.+-.+..++.++
T Consensus       141 Gg~~~lkal~~p~p~~~~~ptGGV~~~n~~~yl~~g~v~~~~Gs~l~~~~~i~~~d~~~i~~~a~~~v~  209 (213)
T d1wbha1         141 GGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVE  209 (213)
T ss_dssp             THHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEEEGGGSCHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhcCcccCCceeeeCCCCHHHHHHHHhCCCEEEEEChhhCChhhhhcCCHHHHHHHHHHHHH
Confidence            1356788888888999999999999999999999999999999999953     455555555555444

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.75  E-value=6.6e-09  Score=74.98  Aligned_cols=94  Identities=16%  Similarity=0.272  Sum_probs=67.7

Q ss_pred             HHHHHHHHHcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdG  109 (157)
                      .+.++.+|+..- ..-+.+..+|. +.+.+.++  .++|.|++-         .|.|+.++. ++.++...+.+.+++.|
T Consensus        65 ~~~~~~~~~~~~~~~~I~VEv~~~-~e~~~a~~--~g~d~i~LD---------n~~pe~~k~~~~~lk~~~~~i~lEaSG  132 (170)
T d1o4ua1          65 ERAVQEVRKIIPFTTKIEVEVENL-EDALRAVE--AGADIVMLD---------NLSPEEVKDISRRIKDINPNVIVEVSG  132 (170)
T ss_dssp             HHHHHHHHTTSCTTSCEEEEESSH-HHHHHHHH--TTCSEEEEE---------SCCHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             HHHHHHHHhhCCCCceEEEEeCcH-HHHHHHHh--cCccEEEEc---------CcChhhHhHHHHHHHhhCCcEEEEEEC
Confidence            788888887532 22344444554 44444443  689999885         345565555 44556677889999999


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      |||++|++++.+.|+|.+++|+...+++
T Consensus       133 GI~~~ni~~~a~~GVD~Is~g~lt~~a~  160 (170)
T d1o4ua1         133 GITEENVSLYDFETVDVISSSRLTLQEV  160 (170)
T ss_dssp             CCCTTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred             CCCHHHHHHHHHcCCCEEEcCccccCCC
Confidence            9999999999999999999998766543

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.64  E-value=4.1e-07  Score=68.87  Aligned_cols=125  Identities=18%  Similarity=0.278  Sum_probs=89.7

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      +|. .+.+...+|||.|.+.....+ +.+.++++.+++.|+.+-+.++....++.   .++  .+++.|.+=..+  ...
T Consensus       114 d~~-QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~---a~~--~~a~iIGINnRn--L~t  185 (247)
T d1a53a_         114 KES-QIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDI---ALR--IGARFIGINSRD--LET  185 (247)
T ss_dssp             SHH-HHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHH---HHH--TTCSEEEEESBC--TTT
T ss_pred             ChH-HHHHHHHhhcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHH---HHh--CCCCeEeeeccC--hhh
Confidence            444 566778899999999988775 34489999999999999999954333333   332  367777442222  122


Q ss_pred             cccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCH
Q 031554           83 QKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEP  139 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~  139 (157)
                      -..   .+++-.++....| +..+..-+||+ .+.+..+.++|+|+|.+|+++.+++|+
T Consensus       186 ~~v---d~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~~d~  241 (247)
T d1a53a_         186 LEI---NKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRNPEK  241 (247)
T ss_dssp             CCB---CHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred             hhh---hhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCCCch
Confidence            222   2334444555544 67888999999 799999999999999999999998886

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=98.62  E-value=3.3e-07  Score=69.67  Aligned_cols=134  Identities=15%  Similarity=0.181  Sum_probs=94.4

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +|. .+.+...+|||.|.+.....++...++++.++..|+.+-+.++....++.+   ++  .+++.|.+=..+.-+-. 
T Consensus       117 d~~-QI~ea~~~GADaVLLIaall~~~l~~l~~~A~~lgl~~LVEvh~~~El~~a---~~--~~a~iIGINnRdL~t~~-  189 (254)
T d1vc4a_         117 DPF-MLEEARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVHTERELEIA---LE--AGAEVLGINNRDLATLH-  189 (254)
T ss_dssp             SHH-HHHHHHHTTCSEEEEEHHHHGGGHHHHHHHHHHHTCEEEEEECSHHHHHHH---HH--HTCSEEEEESBCTTTCC-
T ss_pred             cHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCceEEEeccHHHHhhh---hc--CCCCEEEEeccchhhhh-
Confidence            444 566788999999999876555555789999999999999999644444433   33  25677755333332111 


Q ss_pred             ccchhHHHHHHHH-HhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554           84 KFMPEMMDKVRSL-RNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM  146 (157)
Q Consensus        84 ~~~~~~~~ki~~l-~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l  146 (157)
                       .......++.++ .+...++.+..-+||+ .+++..+ ++|+|+|.+|+++.+++||.+++++|
T Consensus       190 -vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv~~l-~~g~davLIGesLm~~~d~~~~l~~L  252 (254)
T d1vc4a_         190 -INLETAPRLGRLARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDLEAALREL  252 (254)
T ss_dssp             -BCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTT-TTTCSEEEECHHHHTSSCHHHHHHHH
T ss_pred             -cchHHHHHhhhcccccCCCCEEEEccCCCCHHHHHHH-HcCCCEEEEChhhcCCCCHHHHHHHh
Confidence             122333444443 3444567788999995 7888876 67999999999999999999988876

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.55  E-value=9.9e-08  Score=68.42  Aligned_cols=90  Identities=16%  Similarity=0.205  Sum_probs=63.5

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL  111 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI  111 (157)
                      .+.++.+|+.....-+.+..++..+ +.+.++  .++|.|++-         .|.|+.+++.  ++...+++.+++-|||
T Consensus        67 ~~~~~~~~~~~~~~~IeVEv~~~~~-~~~a~~--~g~diImLD---------N~~pe~~~~a--v~~i~~~~~lEaSGgI  132 (167)
T d1qapa1          67 RQAVEKAFWLHPDVPVEVEVENLDE-LDDALK--AGADIIMLD---------NFNTDQMREA--VKRVNGQARLEVSGNV  132 (167)
T ss_dssp             HHHHHHHHHHSTTSCEEEEESSHHH-HHHHHH--TTCSEEEES---------SCCHHHHHHH--HHTTCTTCCEEECCCS
T ss_pred             hhhhHHHhhcCCCceEEEecCcHHH-HHHHHh--cCCcEEEec---------CCCHHHHHHH--HHhcCCceEEEEeCCC
Confidence            6778888877655555555455544 444443  689999873         2445544432  2334567999999999


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccC
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      |.+|+..+.+.|+|.+++|+-..+
T Consensus       133 ~~~ni~~ya~~GVD~IS~galt~~  156 (167)
T d1qapa1         133 TAETLREFAETGVDFISVGALTKH  156 (167)
T ss_dssp             CHHHHHHHHHTTCSEEECSHHHHE
T ss_pred             CHHHHHHHHHcCCCEEECCcccCC
Confidence            999999999999999999985443

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=98.54  E-value=4.8e-07  Score=68.57  Aligned_cols=135  Identities=16%  Similarity=0.259  Sum_probs=94.9

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      +|. .+.+...+|||.|.+-....+ +.+..+++.++..|+.+-+.++  +. +.++..++. ..++.|.+=..+.    
T Consensus       112 d~~-QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh--~~-~El~~al~~-~~a~iiGINnRdL----  182 (251)
T d1i4na_         112 DTV-QVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVH--SR-EDLEKVFSV-IRPKIIGINTRDL----  182 (251)
T ss_dssp             STH-HHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEEC--SH-HHHHHHHTT-CCCSEEEEECBCT----
T ss_pred             CHH-HHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCCeeecccC--CH-HHHHHHhcc-cccceeeeeecch----
Confidence            444 456778899999999988774 3348899999999999999985  33 333433321 2466664433322    


Q ss_pred             cccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554           83 QKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      ..|. -.+++-.++....| +..+..-+||+ ++++..+ .+|+|.|-+|+++.+++||.+.++.|+..
T Consensus       183 ~t~~-vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~~l-~~G~davLIG~sLm~~~~p~~~l~~l~a~  249 (251)
T d1i4na_         183 DTFE-IKKNVLWELLPLVPDDTVVVAESGIKDPRELKDL-RGKVNAVLVGTSIMKAENPRRFLEEMRAW  249 (251)
T ss_dssp             TTCC-BCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHH-TTTCSEEEECHHHHHCSSHHHHHHHHHHH
T ss_pred             hccc-hhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHHHH-HhCCCEEEEChHHhCCCCHHHHHHHHHhc
Confidence            1111 12233445555554 56788899996 7999887 58999999999999999999999998853

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.53  E-value=1.5e-06  Score=67.32  Aligned_cols=148  Identities=13%  Similarity=0.194  Sum_probs=98.4

Q ss_pred             ChHHHH---HHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHc-CCceEEEecCCCC-HHhHHhhHh
Q 031554            4 NPLDYV---EPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSK-GMRPGVALKPGTS-VEEVYPLVE   63 (157)
Q Consensus         4 ~p~~~i---~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~-g~~~gl~l~~~t~-~~~~~~~~~   63 (157)
                      ++++|.   +.+.+.|||.+.++.-.+.               +.+.+.++.+|+. ...+.+=+.|..+ ...+...+.
T Consensus       114 ~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~  193 (312)
T d1gtea2         114 NKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAK  193 (312)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHH
T ss_pred             chhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhccCCceeecccccchhHHHHHHHHH
Confidence            455444   4556779999999854322               1235677888886 4445555777644 333333332


Q ss_pred             cCCCCCeEEEEeeeC------------------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHH
Q 031554           64 GANPVEMVLVMTVEP------------------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE  118 (157)
Q Consensus        64 ~~~~~d~vl~m~v~p------------------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~  118 (157)
                      - .++|.|.+....+                        |.+|....+..++-++++++..++++|...|||+ .+++.+
T Consensus       194 ~-~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~  272 (312)
T d1gtea2         194 E-GGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQ  272 (312)
T ss_dssp             H-HTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHH
T ss_pred             H-hcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHH
Confidence            2 4788887753321                        1223333456788899999988889999999996 899999


Q ss_pred             HHHcCCCEEEEccccc-CCCCH-HHHHHHHHHHHHH
Q 031554          119 AASAGANCIVAGSSVF-GAPEP-AHVISLMRKSVED  152 (157)
Q Consensus       119 ~~~~Gad~vV~GSai~-~~~d~-~~~~~~l~~~~~~  152 (157)
                      ++.+|||.+=+||+++ +.++. .+-.+.|++.+++
T Consensus       273 ~l~aGA~~Vqv~ta~~~~G~~~i~~i~~~L~~~m~~  308 (312)
T d1gtea2         273 FLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYL  308 (312)
T ss_dssp             HHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCeeEECHhhhccChHHHHHHHHHHHHHHHH
Confidence            9999999999999865 43553 4455666665543

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.52  E-value=8.9e-07  Score=67.04  Aligned_cols=134  Identities=21%  Similarity=0.251  Sum_probs=91.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCc-eEEEecCC-------------------CCHHhHHhhHhcC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMR-PGVALKPG-------------------TSVEEVYPLVEGA   65 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~-~gl~l~~~-------------------t~~~~~~~~~~~~   65 (157)
                      .+.++.+.++||+.|.+.-.+..++ .-+-+.++..|.+ +.+++...                   ++.+.++.+.+  
T Consensus        88 ~e~~~~ll~~G~~kVii~s~~~~~~-~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--  164 (252)
T d1h5ya_          88 LEDATTLFRAGADKVSVNTAAVRNP-QLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEE--  164 (252)
T ss_dssp             HHHHHHHHHHTCSEEEESHHHHHCT-HHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHH--
T ss_pred             hhhhhhHhhcCCcEEEecccccCCc-chHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHh--
Confidence            3567788999999999997777777 5555566667765 44444311                   24455566554  


Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc-CCCCHHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF-GAPEPAHVI  143 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~-~~~d~~~~~  143 (157)
                      .++.-++++.+.--...+-+.-+   .++++++. .+.++.+.||++ .+++.++...|++++++||++. +.-++.+..
T Consensus       165 ~g~~eii~tdI~~dG~~~G~d~~---~~~~i~~~-~~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~~~~~~~~lk  240 (252)
T d1h5ya_         165 LGAGEILLTSIDRDGTGLGYDVE---LIRRVADS-VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVK  240 (252)
T ss_dssp             HTCSEEEEEETTTTTTCSCCCHH---HHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHH
T ss_pred             cCCCEEEEEeecccCccCCcCHH---HHHHHHHh-cCCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHcCCCCHHHHH
Confidence            36888999888763333334434   45555555 368999999999 6999999999999999999875 434444443


Q ss_pred             HHH
Q 031554          144 SLM  146 (157)
Q Consensus       144 ~~l  146 (157)
                      +.+
T Consensus       241 ~~l  243 (252)
T d1h5ya_         241 RYL  243 (252)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=98.48  E-value=7.8e-07  Score=66.09  Aligned_cols=125  Identities=9%  Similarity=0.068  Sum_probs=86.6

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP   87 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~   87 (157)
                      .++.+.++||+++.-+.-    . .+++++++++|+-..--+  -||-|....+-   .+.++|=+   .|...     -
T Consensus        81 ~~~~a~~aGa~FivsP~~----~-~~v~~~a~~~~i~~iPGv--~TpsEi~~A~~---~G~~~vKl---FPA~~-----~  142 (216)
T d1mxsa_          81 MFAAVEAAGAQFVVTPGI----T-EDILEAGVDSEIPLLPGI--STPSEIMMGYA---LGYRRFKL---FPAEI-----S  142 (216)
T ss_dssp             HHHHHHHHTCSSEECSSC----C-HHHHHHHHHCSSCEECEE--CSHHHHHHHHT---TTCCEEEE---TTHHH-----H
T ss_pred             HHHHHHhCCCCEEECCCC----c-HHHHHHHHhcCCCccCCc--CCHHHHHHHHH---CCCCEEEe---ccccc-----c
Confidence            466777888887776642    2 577888888877654444  35666555555   56777644   24200     0


Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHHH
Q 031554           88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKSV  150 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~  150 (157)
                      ...+.++.++.-+|++++...|||+.+|+.++.++|+-..+.||.+|..     .|+.+--+..++.+
T Consensus       143 ~g~~~ikal~~p~p~~~fiptGGV~~~n~~~yl~~~~v~avggs~l~~~~~i~~~d~~~i~~~a~~~~  210 (216)
T d1mxsa_         143 GGVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVGTTWMLDSSWIKNGDWARIEACSAEAI  210 (216)
T ss_dssp             THHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEEECTTSCHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHhcccccCceeccCCCCHHHHHHHHhcCCeEEEEccccCCHHHhhcCCHHHHHHHHHHHH
Confidence            1355788888888999999999999999999999999999999999963     45544444444433

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.47  E-value=1.4e-06  Score=64.95  Aligned_cols=44  Identities=16%  Similarity=0.301  Sum_probs=35.1

Q ss_pred             HHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           91 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        91 ~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      +.+.+.++...+.++.|.|||+ +++++++.+ +||++|+||+|.+
T Consensus       176 ~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaive  220 (231)
T d2f6ua1         176 ELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYE  220 (231)
T ss_dssp             HHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHH
T ss_pred             hHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHhc
Confidence            3344445555679999999995 899999876 8999999999863

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=5.7e-06  Score=62.63  Aligned_cols=131  Identities=13%  Similarity=0.154  Sum_probs=92.2

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      +|. .+.+...+|||.|.+-....+. .+.++++.++..|+.+-+.++....++   ..++  .+.+.|.+=..+--   
T Consensus       119 d~~-QI~ear~~GADavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~---~a~~--~~a~iIGINnRnL~---  189 (254)
T d1piia2         119 DPY-QIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQE---RAIA--LGAKVVGINNRDLR---  189 (254)
T ss_dssp             SHH-HHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHH---HHHH--TTCSEEEEESEETT---
T ss_pred             cHH-HHHHHHhhccchhhhhHhhhcccHHHHHHHHHHHHhhhHHHhhccHHHHH---HHHh--hcccccCccccchh---
Confidence            444 5667789999999999888765 447899999999999988885433333   3332  36777754333321   


Q ss_pred             cccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554           83 QKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM  146 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l  146 (157)
                       .|. -.+++-.++....| +..+..-+||+ ++++..+ .+|+|.|.+|+++.+++||.+++++|
T Consensus       190 -tf~-vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l-~~g~davLiGeslm~~~dp~~~l~~L  252 (254)
T d1piia2         190 -DLS-IDLNRTRELAPKLGHNVTVISESGINTYAQVREL-SHFANGFLIGSALMAHDDLHAAVRRV  252 (254)
T ss_dssp             -TTE-ECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHH-TTTCSEEEECHHHHTCSCHHHHHHHH
T ss_pred             -hhh-hhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHH
Confidence             111 12333334444433 56778899996 7899887 67999999999999999999998876

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=2e-06  Score=64.96  Aligned_cols=135  Identities=16%  Similarity=0.183  Sum_probs=93.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCce---EEEec-----------C------CCCHHhHHhhHhcC
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRP---GVALK-----------P------GTSVEEVYPLVEGA   65 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~---gl~l~-----------~------~t~~~~~~~~~~~~   65 (157)
                      .+.++.+.+.||+.|.+...+..++ ..+-+.+...|...   .+.+.           .      -+..+.+.++.+  
T Consensus        86 ~e~i~~~l~~Ga~kviigs~~~~n~-~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  162 (253)
T d1thfd_          86 FETASELILRGADKVSINTAAVENP-SLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEK--  162 (253)
T ss_dssp             HHHHHHHHHTTCSEEEESHHHHHCT-HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHH--
T ss_pred             chhhhhHHhcCCCEEEEChHHhhCh-HHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHh--
Confidence            3467888999999999998888887 66666667777552   22221           0      012345555554  


Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-CHHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-EPAHVI  143 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~  143 (157)
                      ..+.-++++.+.--...+-+.-   +.++++++. .+.++.+.||++ .+++.++..+|++++++||++.... ++.+..
T Consensus       163 ~g~~eii~tdI~~dGt~~G~d~---~ll~~i~~~-~~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~~~~~~~~~k  238 (253)
T d1thfd_         163 RGAGEILLTSIDRDGTKSGYDT---EMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELK  238 (253)
T ss_dssp             TTCSEEEEEETTTTTSCSCCCH---HHHHHHGGG-CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHH
T ss_pred             ccCCEEEEEEecccCccCCccc---ccccccccc-ccceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHcCCCCHHHHH
Confidence            4789999998876434444443   444555555 478999999999 6999999999999999999987443 555554


Q ss_pred             HHHH
Q 031554          144 SLMR  147 (157)
Q Consensus       144 ~~l~  147 (157)
                      +.++
T Consensus       239 ~~l~  242 (253)
T d1thfd_         239 EYLK  242 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.33  E-value=4.2e-06  Score=62.55  Aligned_cols=133  Identities=14%  Similarity=0.148  Sum_probs=88.4

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC--------------CCCHHhHHhhHhcCCCCCeE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP--------------GTSVEEVYPLVEGANPVEMV   71 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~--------------~t~~~~~~~~~~~~~~~d~v   71 (157)
                      .+.++.+.+.|++.|.+.-.+..++ .-.-+..+..|.+..+++..              .+..+.++.+.+  ..+.-+
T Consensus        86 ~~~~~~ll~~Ga~kVvi~s~~~~~~-~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~~~~~~~~~~~~~~~~--~g~~ei  162 (239)
T d1vzwa1          86 DDTLAAALATGCTRVNLGTAALETP-EWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNK--EGCARY  162 (239)
T ss_dssp             HHHHHHHHHTTCSEEEECHHHHHCH-HHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHH--TTCCCE
T ss_pred             chhhhhhhccccccchhhHHhhhcc-ccchhhhccCCceeeeeeccceeeecCccceeeccccchhhhhhhh--ccccEE
Confidence            3467888999999999998877777 55555566678777766531              112344555554  467788


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH---cCCCEEEEcccccCCC-CHHHHHHH
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS---AGANCIVAGSSVFGAP-EPAHVISL  145 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~---~Gad~vV~GSai~~~~-d~~~~~~~  145 (157)
                      +++.+.--...+-+.-+   .++++++. .+.++.+.|||+ .+++..+.+   .|++++++||+++... +++++++.
T Consensus       163 i~tdi~~dGt~~G~d~~---l~~~i~~~-~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~g~i~~~e~~~~  237 (239)
T d1vzwa1         163 VVTDIAKDGTLQGPNLE---LLKNVCAA-TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEA  237 (239)
T ss_dssp             EEEEC-------CCCHH---HHHHHHHT-CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHH
T ss_pred             EEEeecccceecCCcch---hhhhhhhc-cCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHCCCCCHHHHHHh
Confidence            99888753333333333   44555554 468899999999 688887755   5999999999987544 67776654

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.33  E-value=7e-06  Score=61.64  Aligned_cols=137  Identities=15%  Similarity=0.145  Sum_probs=92.1

Q ss_pred             HHHHHHhCC--CCEEEEcccCC-----cchHHHHHHHHHH---cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554            8 YVEPLGKAG--ASGFTFHVEIS-----KDNWQELVQRIKS---KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE   77 (157)
Q Consensus         8 ~i~~~~~~g--ad~v~vh~e~~-----~~~~~~~i~~ir~---~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~   77 (157)
                      ..++..|..  -+||-+-.-..     +++ .++++.++.   .|+.+-.-++  .+.-..+++.+  -+...|.-++. 
T Consensus        84 ~A~larE~~~~~~~iKLEVi~d~~~L~Pd~-~etl~Aa~~Lv~egF~Vlpy~~--~D~v~ak~le~--~Gc~~vMplgs-  157 (243)
T d1wv2a_          84 TCRLARELLDGHNLVKLEVLADQKTLFPNV-VETLKAAEQLVKDGFDVMVYTS--DDPIIARQLAE--IGCIAVMPLAG-  157 (243)
T ss_dssp             HHHHHHTTTTSCCEEEECCBSCTTTCCBCH-HHHHHHHHHHHTTTCEEEEEEC--SCHHHHHHHHH--SCCSEEEECSS-
T ss_pred             HHHHHHHHhCCCceEEEeeeccccccCCcH-HHHHHHHHHhhcCceEEEeccC--CCHHHHhHHHH--cCceeeeeccc-
Confidence            345556653  47888763222     234 567776665   4665544453  33334444443  36666654443 


Q ss_pred             CCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           78 PGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        78 pG~~gq~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      |..+||-. .+.   .++.+++. +++++.||+||. +.++....+.|+|+|-+.|+|+++.||....+.|+..++-.|
T Consensus       158 PIGsg~Gi~n~~---~l~~i~~~-~~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa~A~dP~~mA~A~~~Av~agr  232 (243)
T d1wv2a_         158 LIGSGLGICNPY---NLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGR  232 (243)
T ss_dssp             STTCCCCCSCHH---HHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccHH---HHHhcccc-CCcceEeecccCCHHHHHHHHHccCCEEEechHhhcCCCHHHHHHHHHHHHHHHH
Confidence            44445443 333   34445554 689999999999 799999999999999999999999999999999998877544

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=98.32  E-value=4.1e-06  Score=63.11  Aligned_cols=129  Identities=17%  Similarity=0.150  Sum_probs=89.2

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE-ec-------------CC------CCHHhHHhhHhcCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA-LK-------------PG------TSVEEVYPLVEGAN   66 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~-l~-------------~~------t~~~~~~~~~~~~~   66 (157)
                      +.++.+.+.||+.|.+.-.+..++ .-+-+.++..|.+..++ +.             ..      ++.+.+..+.+  .
T Consensus        87 e~~~~ll~~Ga~kVii~s~~~~n~-~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  163 (251)
T d1ka9f_          87 EDARKLLLSGADKVSVNSAAVRRP-ELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVE--L  163 (251)
T ss_dssp             HHHHHHHHHTCSEEEECHHHHHCT-HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHH--H
T ss_pred             HHHHHHHHcCCCEEEECchhhhCH-HHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHh--c
Confidence            467788999999999998877777 55555566667665442 21             10      23355565554  3


Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-CHHHH
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-EPAHV  142 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~  142 (157)
                      ++.-++++.+.--...+-+.-   +-++++++. .+.++.+.||++ .+++.++.+.|++++++||+++... ++.+.
T Consensus       164 g~~eii~tdi~~dG~~~G~d~---~l~~~i~~~-~~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~g~~~~~~~  237 (251)
T d1ka9f_         164 GAGEILLTSMDRDGTKEGYDL---RLTRMVAEA-VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKL  237 (251)
T ss_dssp             TCCEEEEEETTTTTTCSCCCH---HHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHH
T ss_pred             CCCEEEEEeecccCccCCcch---hHHHHHHhh-cceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHcCCCCHHHH
Confidence            688999998876434444443   444555555 468899999999 6999999999999999999987433 44443

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=1e-05  Score=63.38  Aligned_cols=124  Identities=26%  Similarity=0.290  Sum_probs=83.5

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG--   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~--   81 (157)
                      .++++.+.++|+|++++...... ..+.+.++.+|+....+-+ +=|..| .+..+.+.+  .++|.|.+ ++-||..  
T Consensus       100 ~e~~~~li~agvd~ivId~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t-~~~a~~l~~--~GaD~v~V-Gig~Gs~ct  175 (330)
T d1vrda1         100 MERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVAT-PEGTEALIK--AGADAVKV-GVGPGSICT  175 (330)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECS-HHHHHHHHH--TTCSEEEE-CSSCSTTCH
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCchhHHHHHHHHHHhCCCCCEEeechhH-HHHHHHHHH--cCCCEEee-ccccCcccc
Confidence            56788899999999998643211 1226778888876544434 435455 444555544  68999987 6666632  


Q ss_pred             -------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554           82 -------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        82 -------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                             |.+.. ..+..+.+.++. .+++|.+||||+ ...+.....+|||.+-+||.+-.
T Consensus       176 t~~~~G~g~p~~-sai~~~~~~~~~-~~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~  235 (330)
T d1vrda1         176 TRVVAGVGVPQL-TAVMECSEVARK-YDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAG  235 (330)
T ss_dssp             HHHHHCCCCCHH-HHHHHHHHHHHT-TTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             ccceeccccccc-hhHHHHHHHHHh-cCceEEecCCcccCCchheeeeccCceeeecchhee
Confidence                   22211 233344444443 479999999999 69999999999999999997754

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.28  E-value=1.5e-05  Score=59.57  Aligned_cols=138  Identities=20%  Similarity=0.196  Sum_probs=97.0

Q ss_pred             HHHHHHhC-CCCEEEEcccC-----CcchHHHHHHHHHH---cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            8 YVEPLGKA-GASGFTFHVEI-----SKDNWQELVQRIKS---KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         8 ~i~~~~~~-gad~v~vh~e~-----~~~~~~~~i~~ir~---~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      ..+++.|. |-|||-+-.-.     .+++ .+++++.+.   .|+.+-.-++  .+....+++.+.  ++..|+-++..-
T Consensus        83 ~A~lARE~~~t~~IKLEVi~D~~~L~PD~-~etl~Aae~Lv~eGF~VlpY~~--~D~v~ak~Le~~--Gc~avMPlgsPI  157 (251)
T d1xm3a_          83 IARLAKASGLCDMIKVEVIGCSRSLLPDP-VETLKASEQLLEEGFIVLPYTS--DDVVLARKLEEL--GVHAIMPGASPI  157 (251)
T ss_dssp             HHHHHHHTTCCSSEEECCBCCTTTCCBCH-HHHHHHHHHHHHTTCCEEEEEC--SCHHHHHHHHHH--TCSCBEECSSST
T ss_pred             HHHHHHHhcCCceEEEEEecCCCCcCCCH-HHHHHHHHHHHhCCcEEEEecC--CCHHHHHHHHHc--CChhHHHhhhhh
Confidence            33444444 67787766422     1345 666666554   5887766664  444445555543  677777766666


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      |.+-....++   .|+.+++. .++++.||+||. +.++.+.-+.|+|.|-+.|+|.++.||....+.++..++-.|
T Consensus       158 GSg~Gl~n~~---~l~~i~~~-~~vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA~a~dPv~MA~A~~~Av~AGR  230 (251)
T d1xm3a_         158 GSGQGILNPL---NLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVEAGR  230 (251)
T ss_dssp             TCCCCCSCHH---HHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             hcCCCcCChH---HHHHHHhc-CCccEEEecCCCCHHHHHHHHHccCCEEEechhhhcCCCHHHHHHHHHHHHHHHH
Confidence            6443333444   45555666 589999999998 799999999999999999999999999999999998877544

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=98.27  E-value=1e-05  Score=64.72  Aligned_cols=126  Identities=23%  Similarity=0.274  Sum_probs=82.5

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-   81 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-   81 (157)
                      .....+.+.++|+|++.+...... ..+.++++++|+..-.+-+.. |..|+ +..+.+++  .++|.|.+ ++=||.. 
T Consensus       152 ~~~ra~~L~~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~-e~a~~L~~--~GaD~VkV-GiGpGs~C  227 (388)
T d1eepa_         152 TIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTK-EAALDLIS--VGADCLKV-GIGPGSIC  227 (388)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSH-HHHHHHHT--TTCSEEEE-CSSCSTTS
T ss_pred             HHHHHHHHHhhccceeeeeccccchHHHHHHHHHHHHHCCCCceeeccccCH-HHHHHHHh--cCCCeeee-cccccccc
Confidence            456788899999999999643211 223778888887654444433 44444 44555654  68999987 3444422 


Q ss_pred             --------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           82 --------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        82 --------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                              |-+. -..+..+.+..+. ..++|.+||||+ ..++...+.+|||.+-+||.+-+.
T Consensus       228 tTr~~~GvG~pq-~sai~~~~~~~~~-~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~  289 (388)
T d1eepa_         228 TTRIVAGVGVPQ-ITAICDVYEACNN-TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT  289 (388)
T ss_dssp             HHHHHHCCCCCH-HHHHHHHHHHHTT-SSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTB
T ss_pred             ccccccccCcch-HHHHHHHHHHhcc-CCceEEeccccCcCCceeeeEEeccceeecchhhhcc
Confidence                    1110 1122233333322 468999999999 699999999999999999987653

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.20  E-value=2.2e-05  Score=62.29  Aligned_cols=127  Identities=22%  Similarity=0.279  Sum_probs=83.8

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCce-EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRP-GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~-gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      +..+.++.+.++|+|++++....... ...+.++.+|+..-.. -++=|..|+ +....+.+  .++|.|.+ ++=||..
T Consensus       107 ~~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~-e~a~~L~~--aGaD~VkV-GiG~Gs~  182 (365)
T d1zfja1         107 DTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATA-EGARALYD--AGVDVVKV-GIGPGSI  182 (365)
T ss_dssp             THHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSH-HHHHHHHH--TTCSEEEE-CSSCCTT
T ss_pred             hHHHHHHHHHHcCCCEEEEECCcccccchhHHHHHHHhhCCCcceeecccccH-HHHHHHHh--cCCceEEe-eeccccc
Confidence            34567888899999999987433221 2257788888764333 344454554 44555554  68999977 4445532


Q ss_pred             ---------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           82 ---------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        82 ---------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                               |.+.. ..+..+.+.++. .+.+|.+||||+ ..++...+.+|||.+-+||.+-+.
T Consensus       183 CTTr~~tGvGvPq~-sai~~~~~~~~~-~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~  245 (365)
T d1zfja1         183 CTTRVVAGVGVPQV-TAIYDAAAVARE-YGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGT  245 (365)
T ss_dssp             BCHHHHTCCCCCHH-HHHHHHHHHHHH-TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             ccCcceeeeeccch-hHHHHHHHHHHh-CCceEEecCCcCcchhhhhhhhccCCEEEecchhccc
Confidence                     11111 233344444444 368999999999 699999999999999999988754

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.13  E-value=2.6e-05  Score=62.18  Aligned_cols=125  Identities=20%  Similarity=0.197  Sum_probs=83.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG--   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~--   81 (157)
                      ...++.+.++|+|+++++.-.... ...+.++.+|+.....-+ +=|..|+. ..+.+.+  .++|.|.+. +-||..  
T Consensus       121 ~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e-~a~~L~~--aGAD~VkVG-iG~Gs~ct  196 (378)
T d1jr1a1         121 KYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAA-QAKNLID--AGVDALRVG-MGCGSICI  196 (378)
T ss_dssp             HHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHH-HHHHHHH--HTCSEEEEC-SSCSTTBC
T ss_pred             HHHHHHHHhhccceEeeeccCccchhhHHHHHHHHHHCCCCceeecccccHH-HHHHHHH--hCCCEEeec-cccccccc
Confidence            445788899999999997543322 226788888887644444 34555554 4444444  589999774 334422  


Q ss_pred             -------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           82 -------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        82 -------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                             |-+ .-..+-.+.+.++. .+++|.+||||+ ...+...+.+|||.+-+||.+-+.
T Consensus       197 Tr~~tGvG~p-q~sai~~~~~~a~~-~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt  257 (378)
T d1jr1a1         197 TQEVLACGRP-QATAVYKVSEYARR-FGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAAT  257 (378)
T ss_dssp             HHHHHCCCCC-HHHHHHHHHHHHGG-GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             cccccccCcc-cchhhhHHHHhhcc-cCCceecccccccCCceeeEEEeecceeeecceeeee
Confidence                   111 11233344444443 379999999999 689999999999999999988753

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=98.13  E-value=1.6e-05  Score=59.85  Aligned_cols=141  Identities=16%  Similarity=0.146  Sum_probs=93.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHcCCceEEEec-----CCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSKGMRPGVALK-----PGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~g~~~gl~l~-----~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      +-++.+.+.|+|.|.|..-..+..+ .+.++.+.+.-.-..+.++     ..++.+.++.++++  +++.||--    | 
T Consensus        76 ~di~~~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~l--G~~rILTS----G-  148 (247)
T d1twda_          76 EDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAEL--GIARVLTS----G-  148 (247)
T ss_dssp             HHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHH--TCCEEEEC----T-
T ss_pred             HHHHHHHHcCCCeEEEEEECCCCCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhc--CCCeEecc----C-
Confidence            4577889999999999976655422 3344443332112333332     34677888888876  68998752    3 


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc-------CCC-----------C----
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF-------GAP-----------E----  138 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~-------~~~-----------d----  138 (157)
                       |.+--.+.++.|+++.+...+..|.+.||||.+|++.+.++|++-|=.+..-.       +.+           +    
T Consensus       149 -g~~~a~~G~~~L~~L~~~a~~~iIm~GgGI~~~Ni~~l~~~g~~e~H~sa~~~~~s~~~~~~~~~~~g~~~~~~e~~~~  227 (247)
T d1twda_         149 -QKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSAGAWQASPMRYRNQGLSMSSDEHADEYSRY  227 (247)
T ss_dssp             -TSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHHHTCSEEEECCEEEECCCCCCCC-------------CCEE
T ss_pred             -CCCchhHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCCEEEECCCCcCCCcceecCCCcccCCCCCCCccccc
Confidence             33334567888888887666677999999999999999999999886653221       100           0    


Q ss_pred             --HHHHHHHHHHHHHHHhh
Q 031554          139 --PAHVISLMRKSVEDAQK  155 (157)
Q Consensus       139 --~~~~~~~l~~~~~~~~~  155 (157)
                        -.+.++.+++++++..+
T Consensus       228 ~tD~~~V~~~~~~l~~~~~  246 (247)
T d1twda_         228 IVDGAAVAEMKGIIERHQA  246 (247)
T ss_dssp             EECHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhhc
Confidence              03778888888887543

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.05  E-value=1.1e-05  Score=60.26  Aligned_cols=108  Identities=15%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             HHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHH------------------------
Q 031554           39 KSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR------------------------   94 (157)
Q Consensus        39 r~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~------------------------   94 (157)
                      .++.+++=+.....+--+.++++.   .....+-    .-|+.|-...-+....++                        
T Consensus       100 ~k~~fkvpfVcg~r~Lgealrri~---EgAamIr----tkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~l  172 (254)
T d1znna1         100 DKRQFTVPFVCGCRDLGEAARRIA---EGASMLR----TKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQL  172 (254)
T ss_dssp             CGGGCSSCEEEEESSHHHHHHHHH---TTCSEEE----ECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred             cccceeeeeeCCCCccchhHHHHH---HHHHHHH----hCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            334455555555556667777777   5665553    346555444433222222                        


Q ss_pred             --------HHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554           95 --------SLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus        95 --------~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                              ++.+. ...+++.+||||. +.++...-+.|+|++-+||+||+++||....+.+.+....+
T Consensus       173 g~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~dP~~~a~A~~~Avt~~  241 (254)
T d1znna1         173 GAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHY  241 (254)
T ss_dssp             TCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred             CCchHHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHcc
Confidence                    22222 2468889999998 89999999999999999999999999999999998876543

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.04  E-value=4.4e-06  Score=62.25  Aligned_cols=52  Identities=19%  Similarity=0.319  Sum_probs=39.3

Q ss_pred             HHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           93 VRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        93 i~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      +..+++...+.+++|.|||+ +++++++. .+||++|+||+|.+  ++.+..+.++
T Consensus       172 ~~~v~~~~~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~--~ie~~~~~~~  224 (229)
T d1viza_         172 VKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE--DFDRALKTVA  224 (229)
T ss_dssp             HHHHHHTCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH--CHHHHHTHHH
T ss_pred             HHHHHhhccCcceEEEcccCCHHHHHHHH-cCCCEEEECHHHHh--hHHHHHHHHH
Confidence            34444555678999999996 89999987 69999999999975  5555444333

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.03  E-value=2e-05  Score=58.77  Aligned_cols=129  Identities=16%  Similarity=0.226  Sum_probs=88.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC--------------C-CCHHhHHhhHhcCCCCCe
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP--------------G-TSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~--------------~-t~~~~~~~~~~~~~~~d~   70 (157)
                      .+.++.+.+.|+|.|.+......++  ..++.+.+.+.+..+++..              . ++.+.++.+.+  ..+.-
T Consensus        85 ~~~~~~~~~~Ga~kVvi~s~~~~~~--~~~~~~~~~~~~~~v~iD~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~g~~e  160 (241)
T d1qo2a_          85 LDYAEKLRKLGYRRQIVSSKVLEDP--SFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKE--YGLEE  160 (241)
T ss_dssp             HHHHHHHHHTTCCEEEECHHHHHCT--THHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHT--TTCCE
T ss_pred             hhhhhhccccccceEecCcccccCc--hhhhhhcccccceeeecccccccccccCcccceeeehhHHHHHhhc--cccce
Confidence            3467888999999999997666665  5666677777666666531              1 22344555553  36889


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc------CCCEEEEcccccCCC-CHHHH
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA------GANCIVAGSSVFGAP-EPAHV  142 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~------Gad~vV~GSai~~~~-d~~~~  142 (157)
                      ++++.+.-....+-+.-+.+   +++++. .+.++.+.||++ .+++.++.+.      |++++++||+++... ++.+.
T Consensus       161 ii~~dId~dGt~~G~d~~l~---~~i~~~-~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al~~g~l~~~~~  236 (241)
T d1qo2a_         161 IVHTEIEKDGTLQEHDFSLT---KKIAIE-AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVM  236 (241)
T ss_dssp             EEEEETTHHHHTCCCCHHHH---HHHHHH-HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHH
T ss_pred             EEEeehhhhhhccccchhhh---hhhhcc-CCceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHHHCCCCCHHHH
Confidence            99998875323333444444   444444 468999999999 6999998765      489999999997544 44443

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=98.03  E-value=1.1e-05  Score=60.78  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=63.9

Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .+|++.++.|.+  .++|.+.+........+   .+..++.++++.+. ...+++++|||+ .+++..+..+|||-+|+|
T Consensus        30 gdP~~~a~~~~~--~g~dei~ivDld~~~~~---~~~~~~~i~~i~~~-~~~pi~vgGGIr~~e~i~~~l~~Ga~kviig  103 (253)
T d1thfd_          30 GDPVELGKFYSE--IGIDELVFLDITASVEK---RKTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSIN  103 (253)
T ss_dssp             TCHHHHHHHHHH--TTCCEEEEEESSCSSSH---HHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEeecccccC---cccHHHHHHHHHhc-cCccceeecccccchhhhhHHhcCCCEEEEC
Confidence            468888888875  57999988776654444   23456667777776 478999999999 689999999999999999


Q ss_pred             ccccCCCC
Q 031554          131 SSVFGAPE  138 (157)
Q Consensus       131 Sai~~~~d  138 (157)
                      |+.++.++
T Consensus       104 s~~~~n~~  111 (253)
T d1thfd_         104 TAAVENPS  111 (253)
T ss_dssp             HHHHHCTH
T ss_pred             hHHhhChH
Confidence            99996554

>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=7.9e-05  Score=56.32  Aligned_cols=122  Identities=16%  Similarity=0.129  Sum_probs=73.2

Q ss_pred             HhCCCCEEEEcccCCcchHHHHHHHHHHcCCce-EEEecCCC-------CH---HhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554           13 GKAGASGFTFHVEISKDNWQELVQRIKSKGMRP-GVALKPGT-------SV---EEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus        13 ~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~-gl~l~~~t-------~~---~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      ...|+|++|+|.-...+.+..+++..++.+... ++.+....       .-   +.+..+.+  ...|.+..........
T Consensus       112 ~~~~~d~vTvh~~~G~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~--~~~~gvvg~~~~~~~~  189 (267)
T d1dqwa_         112 IAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTGEYTKGTVDIAK--SDKDFVIGFIAQRDMG  189 (267)
T ss_dssp             HHHHCSEEEEESTTCTHHHHHHHHHHHHHCSSCCEEEEECSCCSTTCCCCHHHHHHHHHHHT--TCTTTEEEEECSSCCC
T ss_pred             hhcCCcEEEecCcCCHHHHHHHHHHhhccCCccccchhhhhhhhhhhhhhhhHHHHHHHHHH--hCCCCceeeehhHHHH
Confidence            356899999999887777678888888776554 33332111       11   22222221  3456655432221111


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEE----------EEcCCCHhhHHHHHHcCCCEEEEccccc-CCCCHHHHHHHHHHHH
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIE----------VDGGLGPSTIAEAASAGANCIVAGSSVF-GAPEPAHVISLMRKSV  150 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~----------vdGGI~~~~i~~~~~~Gad~vV~GSai~-~~~d~~~~~~~l~~~~  150 (157)
                      ...              ..+++.+.          .+.|-...+..+.+++|+|.+|+|++|+ .++||.++++.+++..
T Consensus       190 ~~~--------------~~~~~~ivtpgir~~~~~~~~g~q~~tp~eAi~~Gad~iVVGR~I~~aa~dp~~aak~~r~~~  255 (267)
T d1dqwa_         190 GRD--------------EGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAG  255 (267)
T ss_dssp             CTT--------------TTCCCEEEECSBCSSTTTCSTTTCCBCHHHHHHTTCCEEEECGGGTSTTCCHHHHHHHHHHHH
T ss_pred             HHh--------------cCccceEeccccccCCCCCCCCcccCCHHHHHHCCCCEEEECChhcCCCCCHHHHHHHHHHHH
Confidence            110              01122221          1223444567788899999999999998 5789999999999874

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=2.8e-05  Score=58.25  Aligned_cols=140  Identities=10%  Similarity=0.138  Sum_probs=95.0

Q ss_pred             HHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEE
Q 031554            8 YVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLV   73 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~   73 (157)
                      +++.+.+..++.||+-+|..++              .+..+++.+++.|+++.++++|+-  +.++...+  -++|.|-+
T Consensus        78 ~i~ia~~~kP~qvtLVPe~r~elTTegGld~~~~~~~L~~~i~~l~~~girvSLFiDpd~--~~i~~a~~--lGad~IEl  153 (242)
T d1m5wa_          78 MLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADE--EQIKAAAE--VGAPFIEI  153 (242)
T ss_dssp             HHHHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSCH--HHHHHHHH--TTCSEEEE
T ss_pred             HHHHHHHhccceEEEeecCccccCcCCceeehhhHHHHHHHHHHHHhcCCeEEEEeccch--hhHHHHhh--cCcceeee
Confidence            5556666666666666554431              237789999999999999998753  33333333  38999988


Q ss_pred             EeeeCCCCCcccc----hhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHHcC-CCEEEEcccccCC---CCHHHHH
Q 031554           74 MTVEPGFGGQKFM----PEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGA---PEPAHVI  143 (157)
Q Consensus        74 m~v~pG~~gq~~~----~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~GSai~~~---~d~~~~~  143 (157)
                      .|-.   ....+.    ...++++++..+.  ..++.+-+.=|+|.+|++.+.+.+ .+-+-+|-+|...   --..+++
T Consensus       154 hTG~---Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~ip~i~EvsIGHaiI~eal~~Gl~~aV  230 (242)
T d1m5wa_         154 HTGC---YADAKTDAEQAQELARIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKDAV  230 (242)
T ss_dssp             ECHH---HHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHHTCTTEEEEEECHHHHHHHHHHCHHHHH
T ss_pred             eccc---ccccccchhhHHHHHHHHHHHHHHHhcCCcccCCCCcCccchHHHhcCCCCeEEeccHHHHHHHHHHhHHHHH
Confidence            7532   111221    2245555555443  257999999999999999886654 6778899776642   2467899


Q ss_pred             HHHHHHHHHHh
Q 031554          144 SLMRKSVEDAQ  154 (157)
Q Consensus       144 ~~l~~~~~~~~  154 (157)
                      ++++++++.+|
T Consensus       231 ~~~~~ii~~~r  241 (242)
T d1m5wa_         231 AEMKRLMLEAR  241 (242)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcc
Confidence            99999998876

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=2.1e-05  Score=57.37  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=27.1

Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554          119 AASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus       119 ~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      .+.+|||.+|+|++|++++||.++++++++
T Consensus       169 ai~~GAd~iVVGR~It~s~dp~~~~~~i~e  198 (198)
T d1vqta1         169 EMKGIANFAVLGREIYLSENPREKIKRIKE  198 (198)
T ss_dssp             HHTTTCSEEEESHHHHTSSCHHHHHHHHTC
T ss_pred             HHHcCCCEEEECCcccCCCCHHHHHHHHhC
Confidence            467899999999999999999999998863

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.92  E-value=1.7e-05  Score=59.57  Aligned_cols=82  Identities=18%  Similarity=0.291  Sum_probs=63.6

Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .+|++.++.|.+  .++|.+.+.-......+.   +...+.++++.+.. ..+++++|||+ .++++.+..+||+-+|+|
T Consensus        30 gdP~~~a~~~~~--~g~dei~iiDl~~~~~~~---~~~~~~i~~i~~~~-~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~  103 (251)
T d1ka9f_          30 GDPVEAARAYDE--AGADELVFLDISATHEER---AILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVN  103 (251)
T ss_dssp             TCHHHHHHHHHH--HTCSCEEEEECCSSTTCH---HHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEecccccccc---hhHHHHHHHHHhcc-CcchheeccccCHHHHHHHHHcCCCEEEEC
Confidence            468888777765  478988887777554442   24455677777764 68999999999 699999999999999999


Q ss_pred             ccccCCCCH
Q 031554          131 SSVFGAPEP  139 (157)
Q Consensus       131 Sai~~~~d~  139 (157)
                      |..++.++.
T Consensus       104 s~~~~n~~~  112 (251)
T d1ka9f_         104 SAAVRRPEL  112 (251)
T ss_dssp             HHHHHCTHH
T ss_pred             chhhhCHHH
Confidence            998875543

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.86  E-value=0.00015  Score=55.66  Aligned_cols=140  Identities=16%  Similarity=0.276  Sum_probs=90.3

Q ss_pred             HhCCCCEEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHHhH---HhhHhcCCCCCeEEEEe-e
Q 031554           13 GKAGASGFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVEEV---YPLVEGANPVEMVLVMT-V   76 (157)
Q Consensus        13 ~~~gad~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~---~~~~~~~~~~d~vl~m~-v   76 (157)
                      .+.+||++.+-.-++           .+.+.++++.+|+. +..+.+-+.|......+   ...+.....++.+.... +
T Consensus       117 ~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~  196 (312)
T d2b4ga1         117 TKEKGTILELNLSCPNVPGKPQVGYDFDTTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSI  196 (312)
T ss_dssp             HHHHCCEEEEECCCCCSTTCCCGGGCHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCE
T ss_pred             hhhcccceeeccccCCcCcchhhhccHHHHHHHHHHhhccccccceeccccccchhHHHHHHHHHHhhhhhhhhhhcccc
Confidence            567899999853211           11225677777765 56667778888776543   22221112333333211 1


Q ss_pred             eC--------------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc-
Q 031554           77 EP--------------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF-  134 (157)
Q Consensus        77 ~p--------------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~-  134 (157)
                      .+                    |.+|....+..++.++++++..++..|..-|||. .+++.++..+|||.+=++|+++ 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~  276 (312)
T d2b4ga1         197 GNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHD  276 (312)
T ss_dssp             EEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHH
T ss_pred             cccccccccCCCccccccccccCcccccccchhhHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheeehhhHh
Confidence            01                    1224444455788899998888888899999995 8999999999999999999964 


Q ss_pred             CCCCH-HHHHHHHHHHHHH
Q 031554          135 GAPEP-AHVISLMRKSVED  152 (157)
Q Consensus       135 ~~~d~-~~~~~~l~~~~~~  152 (157)
                      +-+.. .+-.+.|.+.+++
T Consensus       277 ~Gp~~i~~i~~~L~~~l~~  295 (312)
T d2b4ga1         277 EGPIIFARLNKELQEIMTN  295 (312)
T ss_dssp             HCTTHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHH
Confidence            44544 4555667776664

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.86  E-value=7e-05  Score=58.52  Aligned_cols=132  Identities=14%  Similarity=0.163  Sum_probs=84.2

Q ss_pred             HHHHhCCCCEEEEcccC------------C---c-------c---hHHHHHHHHHHc-CCceEEEecCCC------CHHh
Q 031554           10 EPLGKAGASGFTFHVEI------------S---K-------D---NWQELVQRIKSK-GMRPGVALKPGT------SVEE   57 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~------------~---~-------~---~~~~~i~~ir~~-g~~~gl~l~~~t------~~~~   57 (157)
                      ..+.++|+|+|-+|.-.            .   |       +   .+.++++.+|+. +..+++-++++.      ..+.
T Consensus       150 ~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~  229 (337)
T d1z41a1         150 ARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIAD  229 (337)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHH
T ss_pred             HHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccchhh
Confidence            34578999999999521            0   0       0   126788888886 566777676543      2222


Q ss_pred             ---HHhhHhcCCCCCeEEEEeeeCCCCCcccchh-HHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554           58 ---VYPLVEGANPVEMVLVMTVEPGFGGQKFMPE-MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS  131 (157)
Q Consensus        58 ---~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~-~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS  131 (157)
                         +.+.++- .++|++-+.+-..........+. ...-.+++|+.. ++++.+-|+|+ ++.+.++++.| +|.|.+|+
T Consensus       230 ~~~~~~~l~~-~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR  307 (337)
T d1z41a1         230 HIGFAKWMKE-QGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA-DMATGAVGMITDGSMAEEILQNGRADLIFIGR  307 (337)
T ss_dssp             HHHHHHHHHH-TTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEEEECH
T ss_pred             hHHHHHHHHH-cCCcccccccccccccccccCCcccHHHHHHHHHhc-CceEEEeCCcCCHHHHHHHHHCCCcceehhhH
Confidence               2223332 57898877533322222222222 233345555543 68888999996 89999999998 99999999


Q ss_pred             cccCCCCHHHHH
Q 031554          132 SVFGAPEPAHVI  143 (157)
Q Consensus       132 ai~~~~d~~~~~  143 (157)
                      ++...||+...+
T Consensus       308 ~~iadPd~~~k~  319 (337)
T d1z41a1         308 ELLRDPFFARTA  319 (337)
T ss_dssp             HHHHCTTHHHHH
T ss_pred             HHHhCchHHHHH
Confidence            999888875444

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.81  E-value=0.00051  Score=52.73  Aligned_cols=126  Identities=18%  Similarity=0.222  Sum_probs=80.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-----------chHHHHHHHHHHc-CCceEEE-ecCCCCHHhHHhhHhcCCCCCeEE
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-----------DNWQELVQRIKSK-GMRPGVA-LKPGTSVEEVYPLVEGANPVEMVL   72 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-----------~~~~~~i~~ir~~-g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl   72 (157)
                      ....+...+.|++.+.+|.....           ..+.+.++++++. +..+.+- +......+.+..+.+  .++|.|.
T Consensus       110 ~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~--~GaD~i~  187 (329)
T d1p0ka_         110 AQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYE--AGAAAVD  187 (329)
T ss_dssp             HHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHH--HTCSEEE
T ss_pred             HHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHh--cCCCEEE
Confidence            34445556789999998865432           1124677777775 4555542 444455666666654  4899998


Q ss_pred             EEeeeCCCCCc---------------ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554           73 VMTVEPGFGGQ---------------KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        73 ~m~v~pG~~gq---------------~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      +- .+.|....               .+.......+.+++...++++|.+||||+ ..++-+.+.+|||.+-+|+.+.
T Consensus       188 v~-~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l  264 (329)
T d1p0ka_         188 IG-GYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFL  264 (329)
T ss_dssp             EE-C---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             Ec-CCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHHHHHHHHcCCCchhccHHHH
Confidence            84 23331110               01112345566666666789999999999 6999999999999999999643

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=97.81  E-value=0.00055  Score=52.12  Aligned_cols=143  Identities=20%  Similarity=0.322  Sum_probs=89.8

Q ss_pred             HHHHhCC-CCEEEEcccCCc---------c--hHHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhc--CCCCCeEEEE
Q 031554           10 EPLGKAG-ASGFTFHVEISK---------D--NWQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEG--ANPVEMVLVM   74 (157)
Q Consensus        10 ~~~~~~g-ad~v~vh~e~~~---------~--~~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl~m   74 (157)
                      +.+.+++ +|.+.++.-.+.         +  .+.+.++++++.- ..+.+-+.|......+....+.  ...++.+...
T Consensus       113 ~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~  192 (311)
T d1juba_         113 KKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSV  192 (311)
T ss_dssp             HHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEEC
T ss_pred             HHHhhccccceeeeccccccccccccccccHHHHHHHHHHhhcccccceeecccccchhhHHHHHHHHHHhhccceEecc
Confidence            3445555 899888754431         1  2255677777664 3345668887765443332221  1467776554


Q ss_pred             ee-------eC-----------CCC---CcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554           75 TV-------EP-----------GFG---GQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        75 ~v-------~p-----------G~~---gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      ..       .+           |++   |....+..++.++++++.. ++++|...|||+ .+++.++..+|||.|=++|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~t  272 (311)
T d1juba_         193 NSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGT  272 (311)
T ss_dssp             CCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred             ccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeH
Confidence            21       11           112   2233455778888888764 679999999999 7999999999999999999


Q ss_pred             ccc-CCCCH-HHHHHHHHHHHHH
Q 031554          132 SVF-GAPEP-AHVISLMRKSVED  152 (157)
Q Consensus       132 ai~-~~~d~-~~~~~~l~~~~~~  152 (157)
                      +++ +.++. .+-.+.|++.++.
T Consensus       273 al~~~Gp~~i~~i~~~L~~~m~~  295 (311)
T d1juba_         273 ALHKEGPAIFDRIIKELEEIMNQ  295 (311)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHHHH
T ss_pred             hhHhcChHHHHHHHHHHHHHHHH
Confidence            975 43443 3444556665554

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=97.78  E-value=2.4e-05  Score=61.11  Aligned_cols=80  Identities=11%  Similarity=0.121  Sum_probs=62.3

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH------------hhHHHHH
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------------STIAEAA  120 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~------------~~i~~~~  120 (157)
                      +|++.++.|-+  .++|.+.++-+..-..+..-....++.|+++.+.. .++|.+.|||+-            +.++++.
T Consensus        49 dP~~~a~~~~~--~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~-~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll  125 (323)
T d1jvna1          49 KPVQLAQKYYQ--QGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYF  125 (323)
T ss_dssp             HHHHHHHHHHH--TTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred             CHHHHHHHHHH--CCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc-ceeEEEecCcccHHHhhhccchhhHHHHHHH
Confidence            68888888876  68999999888754444444455677888887764 799999999995            3478999


Q ss_pred             HcCCCEEEEcccccC
Q 031554          121 SAGANCIVAGSSVFG  135 (157)
Q Consensus       121 ~~Gad~vV~GSai~~  135 (157)
                      ++|||-|++||+.+.
T Consensus       126 ~~GadKVvI~T~ai~  140 (323)
T d1jvna1         126 RSGADKVSIGTDAVY  140 (323)
T ss_dssp             HHTCSEEEECHHHHH
T ss_pred             HcCCCeEEechHHhh
Confidence            999999999998774

>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=0.0001  Score=53.39  Aligned_cols=117  Identities=19%  Similarity=0.240  Sum_probs=81.3

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      .+|....+.+...+.|++-+|..-   + .+.++.+++.   ...+...++..+... .+.+    ..+|.+++-+ .+|
T Consensus        60 ~~~~~i~~~~~~~~~d~iQlHG~e---~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~d~~lld~-~~g  129 (198)
T d1piia1          60 HDIADVVDKAKVLSLAAVQLHGNE---E-QLYIDTLREALPAHVAIWKALSVGETLP-AREF----QHVDKYVLDN-GQG  129 (198)
T ss_dssp             CCHHHHHHHHHHHTCSEEEECSCC---C-HHHHHHHHHHSCTTSEEEEEEECSSSCC-CCCC----TTCCEEEEES-CSC
T ss_pred             cchhhHHHhhhcccccceeecCCc---c-HHHHHHHhccccccccceeccchhhhhh-HHHh----hhhcccccCC-ccc
Confidence            356666677888999999999863   3 4666677664   333444555444322 2222    4678887754 467


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      ..|+.|.-..+.      .. ...++.+.||||++|+.++++.++.++=+-|.+=.+
T Consensus       130 GtG~~fdw~~~~------~~-~~~~~~LAGGl~~~Nv~~a~~~~p~gvDvsSGvE~~  179 (198)
T d1piia1         130 GSGQRFDWSLLN------GQ-SLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQ  179 (198)
T ss_dssp             CSSCCCCGGGGT------TS-CCTTEEEESSCCTTTHHHHHTTCCSEEEECGGGEEE
T ss_pred             ccceeeehhhhc------cc-ccceeEEecCCCHHHHHHHHhcCCCEEEeCCcccCC
Confidence            789999865432      22 345688999999999999999999999888887543

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.78  E-value=5.4e-05  Score=56.88  Aligned_cols=80  Identities=18%  Similarity=0.315  Sum_probs=61.9

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                      +|++.++.|.+  .++|.+.+.-......+.   +..++-++++.+. ..+++.++|||+ .++++.+..+|||-+++||
T Consensus        33 dP~~~a~~~~~--~gadei~ivDl~~~~~~~---~~~~~~i~~i~~~-~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s  106 (252)
T d1h5ya_          33 DPVEMAVRYEE--EGADEIAILDITAAPEGR---ATFIDSVKRVAEA-VSIPVLVGGGVRSLEDATTLFRAGADKVSVNT  106 (252)
T ss_dssp             CHHHHHHHHHH--TTCSCEEEEECCCCTTTH---HHHHHHHHHHHHH-CSSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             CHHHHHHHHHH--CCCCEEEEEecccccccc---ccHHHHHHHHHhh-cCCcceeecccchhhhhhhHhhcCCcEEEecc
Confidence            58887777765  589999887666554332   3345567777666 378999999998 6999999999999999999


Q ss_pred             cccCCCC
Q 031554          132 SVFGAPE  138 (157)
Q Consensus       132 ai~~~~d  138 (157)
                      ..|..++
T Consensus       107 ~~~~~~~  113 (252)
T d1h5ya_         107 AAVRNPQ  113 (252)
T ss_dssp             HHHHCTH
T ss_pred             cccCCcc
Confidence            9987543

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.77  E-value=0.00024  Score=55.43  Aligned_cols=118  Identities=21%  Similarity=0.396  Sum_probs=82.3

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      .+|. ....+.++|.=.+ +|.....+...+.++.+++....++.++..+ ...+.+..+++  .++|++++-+.+ |  
T Consensus        49 ~~~~-mA~als~~GGlGv-i~r~~~~e~~~~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~--agvd~ivId~A~-G--  121 (330)
T d1vrda1          49 TEAA-LAKALAREGGIGI-IHKNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVK--AGVDVIVIDTAH-G--  121 (330)
T ss_dssp             CSHH-HHHHHHTTTCEEE-ECSSSCHHHHHHHHHHHHTCCBCCEEEECSSTTHHHHHHHHHH--TTCSEEEECCSC-C--
T ss_pred             CCHH-HHHHHHHCCCeEE-eecccchhhhHHHHHHHhhhccEEEEEEecCHHHHHHHHHHHH--CCCCEEEEecCC-C--
Confidence            3444 4556777776443 4544333332667788888888888887432 34566777776  588988764222 2  


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                         ......+.++++|+.+++++|.+..-.+.+.+..+.++|||++.+|
T Consensus       122 ---~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VG  167 (330)
T d1vrda1         122 ---HSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVG  167 (330)
T ss_dssp             ---SSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             ---CchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeec
Confidence               2335566788888888899888887888999999999999999997

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=97.75  E-value=0.00031  Score=52.54  Aligned_cols=129  Identities=17%  Similarity=0.141  Sum_probs=82.4

Q ss_pred             HHHHHhCCCCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEEecC-------CCCHHhHHh----hHhcCCCCCe
Q 031554            9 VEPLGKAGASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVALKP-------GTSVEEVYP----LVEGANPVEM   70 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~l~~-------~t~~~~~~~----~~~~~~~~d~   70 (157)
                      ++.+...|||.|.++.-..++       .+.++.++++++|+-+.+...|       ++..+.+..    ..++  ++|+
T Consensus        96 ve~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~El--GaDi  173 (251)
T d1ojxa_          96 VEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALEL--GADA  173 (251)
T ss_dssp             HHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHH--TCSE
T ss_pred             HHHHHhchhceEEEEEeCCCCchHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHh--CCCE
Confidence            577889999999998433221       1256778889999988776654       223333222    1222  6787


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC---Hh----hHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG---PS----TIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~---~~----~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      +=+  -.||      ..+.+   .++......+++.+-||-.   .+    .++...++||.++++|+.||+.+||.+.+
T Consensus       174 vK~--~~p~------~~~~~---~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~~p~~~~  242 (251)
T d1ojxa_         174 MKI--KYTG------DPKTF---SWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFA  242 (251)
T ss_dssp             EEE--CCCS------SHHHH---HHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHH
T ss_pred             EEe--cCCC------cHHHH---HHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcCcHHHHH
Confidence            743  1232      11222   3333333346666666654   32    22345678999999999999999999999


Q ss_pred             HHHHHHH
Q 031554          144 SLMRKSV  150 (157)
Q Consensus       144 ~~l~~~~  150 (157)
                      +.++.++
T Consensus       243 ~al~~iv  249 (251)
T d1ojxa_         243 RALAELV  249 (251)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=0.00019  Score=52.12  Aligned_cols=117  Identities=19%  Similarity=0.215  Sum_probs=76.2

Q ss_pred             hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC--CCCC
Q 031554            5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP--GFGG   82 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p--G~~g   82 (157)
                      +....+.+.+.+.|+|-+|..   ++ .+.++.+++. .....++...... .+....+  ...+++++-+..+  |..|
T Consensus        65 ~~~i~~~~~~~~~~~vQlhg~---e~-~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~--~~~~~~l~d~~~~~~GGtG  136 (205)
T d1nsja_          65 PEKILDVASYVQLNAVQLHGE---EP-IELCRKIAER-ILVIKAVGVSNER-DMERALN--YREFPILLDTKTPEYGGSG  136 (205)
T ss_dssp             HHHHHHHHHHHTCSEEEECSC---CC-HHHHHHHHTT-SEEEEEEEESSHH-HHHHHGG--GTTSCEEEEESCSSSSSCC
T ss_pred             HHHHHhhhhhccccchhccch---hh-HHHHhhcccc-eeeeeeccccchH-HHHHHhh--cccceeeeccccccCCCCC
Confidence            344455567789999999985   34 5667777764 3444455444333 3333332  3456777766554  5568


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEccccc
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVF  134 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~  134 (157)
                      +.|.-..+..+.   ..  ..++...|||+++|+.++++ .+++++=+-|.+=
T Consensus       137 ~~~dw~~~~~~~---~~--~~~~~LAGGl~~~Nv~~ai~~~~p~gvDvsSgvE  184 (205)
T d1nsja_         137 KTFDWSLILPYR---DR--FRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVE  184 (205)
T ss_dssp             SCCCGGGTGGGG---GG--SSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGE
T ss_pred             cccchhhcccch---hc--ccceeeecCCCHHHHHHHHHHhCCCEEEEcCccc
Confidence            888766544332   22  24688999999999988764 8999998888874

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=97.69  E-value=0.00037  Score=52.99  Aligned_cols=146  Identities=17%  Similarity=0.269  Sum_probs=90.8

Q ss_pred             cChHHHHHHHH----hCCCCEEEEcccCCc------------chHHHHHHHHHHc-CCceEEEecCCC--CHHhHHhhHh
Q 031554            3 TNPLDYVEPLG----KAGASGFTFHVEISK------------DNWQELVQRIKSK-GMRPGVALKPGT--SVEEVYPLVE   63 (157)
Q Consensus         3 ~~p~~~i~~~~----~~gad~v~vh~e~~~------------~~~~~~i~~ir~~-g~~~gl~l~~~t--~~~~~~~~~~   63 (157)
                      .++..+.+.+.    .+|+|.+.+..-++.            +.+...++.+++. ...+.+-+.|..  ..+..+.+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~vkl~~~~~~~~~~a~~~~~  187 (311)
T d1ep3a_         108 SEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEA  187 (311)
T ss_dssp             SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhcccccccccccCCCcccccccccccCHHHHHHHHHHHHhccCCCeeeeecccccchHHHHHHHHH
Confidence            35565655442    258888887654321            1224556667765 444455566553  3333333332


Q ss_pred             cCCCCCeEEEEeeeC------------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCC
Q 031554           64 GANPVEMVLVMTVEP------------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA  124 (157)
Q Consensus        64 ~~~~~d~vl~m~v~p------------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Ga  124 (157)
                        ..+|.+.+....+                  |..|....+..++.++++++.. +++|...|||. .+++.++..+||
T Consensus       188 --~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~-~ipIig~GGI~s~~Da~~~i~~GA  264 (311)
T d1ep3a_         188 --AGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGA  264 (311)
T ss_dssp             --TTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTC
T ss_pred             --hhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhc-ceeEEEeCCcCCHHHHHHHHHcCC
Confidence              5788887654322                  1123333456788899988875 79999999998 689888889999


Q ss_pred             CEEEEcccccCCCCHH-HHHHHHHHHHH
Q 031554          125 NCIVAGSSVFGAPEPA-HVISLMRKSVE  151 (157)
Q Consensus       125 d~vV~GSai~~~~d~~-~~~~~l~~~~~  151 (157)
                      |.|=+||+++..+..- +-.+.|.+.++
T Consensus       265 d~V~ig~~~~~~P~i~~~I~~~L~~~m~  292 (311)
T d1ep3a_         265 SAVAVGTANFADPFVCPKIIDKLPELMD  292 (311)
T ss_dssp             SEEEECTHHHHCTTHHHHHHHHHHHHHH
T ss_pred             CEEEecHHHHcCChHHHHHHHHHHHHHH
Confidence            9999999998755432 33344444433

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.65  E-value=0.00078  Score=53.14  Aligned_cols=122  Identities=19%  Similarity=0.208  Sum_probs=77.2

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC----
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG----   81 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~----   81 (157)
                      .....+.++|+|++.+....... ...+.++++|+.--..-++=|..|+--. ..+    ..+|.|-+ ++-||..    
T Consensus       119 ~r~~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~~~~~~vIaGNVaT~e~~-~~l----~gaD~VkV-GIG~Gs~CTTr  192 (368)
T d2cu0a1         119 KRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFIVGNIANPKAV-DDL----TFADAVKV-GIGPGSICTTR  192 (368)
T ss_dssp             HHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTCCSEEEEEEECCHHHH-TTC----TTSSEEEE-CSSCSTTBCHH
T ss_pred             HHHHHHHHcCCCEEEecCcccchhhhhhhhhhhhhhcccceeeccccCHHHH-Hhh----hcCcceee-cccCcccccch
Confidence            45667889999999987543221 1145666666643234455566776543 222    57999876 5555532    


Q ss_pred             -----CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           82 -----GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        82 -----gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                           |-+.. ..+..+...+.. .+++|.+||||+ ..++...+.+|||.+.+||.+-+.
T Consensus       193 ~~tGvG~Pq~-sAi~e~~~~~~~-~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~  251 (368)
T d2cu0a1         193 IVAGVGVPQI-TAVAMVADRAQE-YGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGT  251 (368)
T ss_dssp             HHTCCCCCHH-HHHHHHHHHHHH-HTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             hhcccccchH-HHHHHHHHHHhc-cCCeeEecCCCCcCChhheeeeeccceeeccchhccc
Confidence                 11111 122223332222 268899999999 679999999999999999987653

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=97.64  E-value=0.00034  Score=55.14  Aligned_cols=128  Identities=17%  Similarity=0.074  Sum_probs=82.3

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcC-Cce-EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKG-MRP-GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF   80 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g-~~~-gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~   80 (157)
                      +..+.++.+.++|+|++++-.-.... .+.++++.+|+.. -.. -++=|..|+. ..+.+++  .++|.|.+. +=||.
T Consensus       110 ~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e-~~~~L~~--aGaD~vkVG-IG~Gs  185 (362)
T d1pvna1         110 DFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGE-GFRYLAD--AGADFIKIG-IGGGS  185 (362)
T ss_dssp             SHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEECSHH-HHHHHHH--HTCSEEEEC-SSCST
T ss_pred             hhHHHHHHHhhcCceEEeechhccchhHHHHHHHHHHHhhccceeeecccccCHH-HHHHHHH--hCCcEEEec-ccccc
Confidence            45677888999999999997543221 2257777776532 222 3343556664 3455554  589998773 44442


Q ss_pred             C---------CcccchhHHHHHHHHHhh-----CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554           81 G---------GQKFMPEMMDKVRSLRNR-----YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus        81 ~---------gq~~~~~~~~ki~~l~~~-----~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      .         |-+. ...+..+...++.     ..+++|.+||||+ ..++...+.+|||.|-+||.+-+.
T Consensus       186 ~CTTr~~tGvG~Pq-~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~  255 (362)
T d1pvna1         186 ICITREQKGIGRGQ-ATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARF  255 (362)
T ss_dssp             TBCHHHHTCBCCCH-HHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTB
T ss_pred             cccchhhhccCCch-HHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcc
Confidence            2         2221 1233344444332     2468999999999 699999999999999999977643

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: Macrophomate synthase
species: Macrophoma commelinae [TaxId: 108330]

Probab=97.58  E-value=0.00029  Score=54.22  Aligned_cols=124  Identities=15%  Similarity=0.168  Sum_probs=81.1

Q ss_pred             HHHHHHHhCCCCEEEEcc-cCCcchHHHHHHHHH-----HcC-----------------------------CceEEEecC
Q 031554            7 DYVEPLGKAGASGFTFHV-EISKDNWQELVQRIK-----SKG-----------------------------MRPGVALKP   51 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~-e~~~~~~~~~i~~ir-----~~g-----------------------------~~~gl~l~~   51 (157)
                      .++..+.++||+.|.|+. ++.++. +++++.+|     .+|                             ..+.+.|..
T Consensus       107 ~~I~~~LD~Ga~GIivP~V~s~eea-~~~v~~~rypP~G~Rg~~~~~~~~g~~~~~~~~~~~~y~~~~n~~~~vi~qIEt  185 (299)
T d1izca_         107 VSLSTALDAGAAGIVIPHVETVEEV-REFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNHVCIIPQIES  185 (299)
T ss_dssp             HHHHHHHHHTCSEEEETTCCCHHHH-HHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHHHHCEEEEEECS
T ss_pred             HHHHHHHHhCcCeeeccccccHHHH-HHHHHhhhhccCCCccccccccccccccccccccchhHHhhhcccceeeeecCC
Confidence            467888999999999985 444444 67777764     111                             113445644


Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEee----eCCC-----CCcccchhHHHHHHHHHhhC--CCCcEEEEcCCCHhhHHHHH
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTV----EPGF-----GGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAA  120 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v----~pG~-----~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~~~~i~~~~  120 (157)
                      ..-++.+++++.. +++|.|.+...    .-|.     .|+...|+..+-++++.+..  .++++. .+..+++.++.+.
T Consensus       186 ~~av~nldeI~av-~GVD~ifiGp~DLs~slG~~~~~~~g~~~~p~v~~ai~~i~~a~k~~Gk~~g-~~~~~~~~~~~~~  263 (299)
T d1izca_         186 VKGVENVDAIAAM-PEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEAMTKFSTAAQRNGVPIF-GGALSVDMVPSLI  263 (299)
T ss_dssp             HHHHHTHHHHHTC-TTCCCEEECHHHHHHHTTCCTTCCTTSCCCHHHHHHHHHHHHHHHHTTCCEE-EECSSGGGHHHHH
T ss_pred             HHHHHHHHHHhcc-ccccEEEEcchHHHhhcCCCcccccccccHHHHHHHHHHHHHHHHHcCCcEE-eccCCHHHHHHHH
Confidence            4466778888876 89999998742    2233     25655666555444443321  245543 3556899999999


Q ss_pred             HcCCCEEEEcccc
Q 031554          121 SAGANCIVAGSSV  133 (157)
Q Consensus       121 ~~Gad~vV~GSai  133 (157)
                      +.|++.+++|+.+
T Consensus       264 ~~G~~~i~~g~D~  276 (299)
T d1izca_         264 EQGYRAIAVQFDV  276 (299)
T ss_dssp             HTTEEEEEEEEHH
T ss_pred             HcCCCEEEEhHHH
Confidence            9999999999853

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.58  E-value=5.5e-05  Score=56.24  Aligned_cols=80  Identities=19%  Similarity=0.394  Sum_probs=60.3

Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      .+|++.++.|.+  .++|.+.+.-.....+ ...   ..+.++++.+.. .++++++|||+ .+++..+.+.|||-+++|
T Consensus        31 ~dP~~~a~~~~~--~ga~~l~i~DLd~~~~-~~~---~~~~i~~i~~~~-~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~  103 (239)
T d1vzwa1          31 GSPLEAALAWQR--SGAEWLHLVDLDAAFG-TGD---NRALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLG  103 (239)
T ss_dssp             CCHHHHHHHHHH--TTCSEEEEEEHHHHHT-SCC---CHHHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEeeccccc-ccc---hHHHHHHHHhhc-CcceEeecccccchhhhhhhccccccchhh
Confidence            478888888875  4789988876663322 222   234556666665 68999999999 699999999999999999


Q ss_pred             ccccCCCC
Q 031554          131 SSVFGAPE  138 (157)
Q Consensus       131 Sai~~~~d  138 (157)
                      |..+..++
T Consensus       104 s~~~~~~~  111 (239)
T d1vzwa1         104 TAALETPE  111 (239)
T ss_dssp             HHHHHCHH
T ss_pred             HHhhhccc
Confidence            99886443

>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermus thermophilus [TaxId: 274]

Probab=97.56  E-value=0.002  Score=46.21  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=76.8

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +++...+.+.+.+.|++-+|.+-   + .+.++.+++ ...+..++....+.. .+...   ..+|++++-+-.+| +|.
T Consensus        63 ~~~~i~~~~~~~~~d~vQlHg~e---~-~~~~~~l~~-~~~iik~~~~~~~~~-~~~~~---~~~~~~L~D~~~~g-~g~  132 (200)
T d1v5xa_          63 PPEEVLRLMEEARLQVAQLHGEE---P-PEWAEAVGR-FYPVIKAFPLEGPAR-PEWAD---YPAQALLLDGKRPG-SGE  132 (200)
T ss_dssp             CHHHHHHHHHHTTCSEEEECSCC---C-HHHHHHHTT-TSCEEEEEECSSSCC-GGGGG---SSCSEEEEECSSTT-SCC
T ss_pred             hhhhhhhhhcccccccccccccC---C-HHHHHHHhh-ccccceeeccCchhh-HHHhh---cchhheeecccccC-ccc
Confidence            45566677788999999999863   3 355666654 344555555443322 12222   46899988776665 444


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .+...-...+   ..  ...++...||||++|+.++.+.++.++=+-|.+=.
T Consensus       133 ~~~~~~~~~~---~~--~~~~~~LAGGl~~~Nv~~~~~~~p~gvDvsSGvE~  179 (200)
T d1v5xa_         133 AYPRAWAKPL---LA--TGRRVILAGGIAPENLEEVLALRPYALDLASGVEE  179 (200)
T ss_dssp             CCCGGGGHHH---HH--TTSCEEECSSCCSTTHHHHHHHCCSEEEESGGGEE
T ss_pred             ccchHHHhhh---hh--ccCceEecCCCCHHHHHHHHhcCCCEEEEcCceEC
Confidence            4443322111   11  24578899999999999999999999998888843

>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Plasmodium vivax [TaxId: 5855]

Probab=97.47  E-value=0.00018  Score=56.19  Aligned_cols=63  Identities=13%  Similarity=0.291  Sum_probs=45.8

Q ss_pred             HHHHHHhhCCCCcEEEEcCCCH--hhHHHH------HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554           92 KVRSLRNRYPSLDIEVDGGLGP--STIAEA------ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        92 ki~~l~~~~~~~~I~vdGGI~~--~~i~~~------~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~  155 (157)
                      .++.+|+..++..|.+ =||..  .+..++      .+.|+|.+|+|+.|+.++||.++++++++.+++...
T Consensus       260 e~~~iR~~~~~~~iL~-PGIGaQggDq~rv~t~~~a~~~ga~~IvvGR~I~~A~dp~~aa~~i~~ei~e~l~  330 (332)
T d2ffca1         260 EIKKIRELFPDCYILA-PGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIKEVLA  330 (332)
T ss_dssp             HHHHHHHHCTTCCEEE-CCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCeEEe-CCcCcCCCCHHHHhCHHhHhhcCceEEEeCccccCCCCHHHHHHHHHHHHHHHHh
Confidence            4566666667766644 33332  333333      356899999999999999999999999998887653

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.47  E-value=4.4e-05  Score=56.86  Aligned_cols=87  Identities=16%  Similarity=0.179  Sum_probs=62.6

Q ss_pred             ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           49 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        49 l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      ....+|++.++.|.+  .++|.+.+.-.+.-..+......   -+..+++.  ..++.++|||+ .+++..+.+.|||-+
T Consensus        27 ~y~~dP~~~a~~~~~--~g~~~l~ivDLda~~~~~~~~~~---~~~~~~~~--~~pl~~gGGI~s~~~~~~~~~~Ga~kV   99 (241)
T d1qo2a_          27 FYEKDPVELVEKLIE--EGFTLIHVVDLSNAIENSGENLP---VLEKLSEF--AEHIQIGGGIRSLDYAEKLRKLGYRRQ   99 (241)
T ss_dssp             EESSCHHHHHHHHHH--TTCCCEEEEEHHHHHHCCCTTHH---HHHHGGGG--GGGEEEESSCCSHHHHHHHHHTTCCEE
T ss_pred             EECCCHHHHHHHHHH--CCCCEEEEEecccccccCCcchh---heehhccc--ccchhhhhhhhhhhhhhhccccccceE
Confidence            345789998888875  57899888766543333332222   23334443  36899999997 799999999999999


Q ss_pred             EEcccccCCCCHHHH
Q 031554          128 VAGSSVFGAPEPAHV  142 (157)
Q Consensus       128 V~GSai~~~~d~~~~  142 (157)
                      ++||++++.++..+.
T Consensus       100 vi~s~~~~~~~~~~~  114 (241)
T d1qo2a_         100 IVSSKVLEDPSFLKS  114 (241)
T ss_dssp             EECHHHHHCTTHHHH
T ss_pred             ecCcccccCchhhhh
Confidence            999999877665443

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=97.45  E-value=0.00091  Score=51.87  Aligned_cols=135  Identities=12%  Similarity=0.166  Sum_probs=84.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc-------------chHHHHHHHHHHcCCc-eEEEecCC-------------------
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK-------------DNWQELVQRIKSKGMR-PGVALKPG-------------------   52 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~-------------~~~~~~i~~ir~~g~~-~gl~l~~~-------------------   52 (157)
                      ......++++|||-|.+.-.+..             ++ .-+-+.++..|.. +.+++...                   
T Consensus       118 ~e~A~~ll~~GadKVvI~T~ai~~p~~~~e~~~~~~n~-~li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~  196 (323)
T d1jvna1         118 LEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGT-SPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEY  196 (323)
T ss_dssp             HHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSC-SHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSS
T ss_pred             hHHHHHHHHcCCCeEEechHHhhChHHHHHHHhhcccc-hhHHHHHHHhCCceEEEEEEEEecccccccccccccccccc
Confidence            45678899999999999854432             22 2233445556754 33344210                   


Q ss_pred             ------------------------CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE
Q 031554           53 ------------------------TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD  108 (157)
Q Consensus        53 ------------------------t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd  108 (157)
                                              +..+.+..+.+  .++--|++-++.-....+-+.   ++-++++++.. ++|+.+-
T Consensus       197 ~~~~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~--~G~GEIlltdIdrDGt~~G~D---~el~~~i~~~~-~iPiIas  270 (323)
T d1jvna1         197 PGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEA--LGAGEILLNCIDKDGSNSGYD---LELIEHVKDAV-KIPVIAS  270 (323)
T ss_dssp             CCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHH--TTCCEEEECCGGGTTTCSCCC---HHHHHHHHHHC-SSCEEEC
T ss_pred             ccCCCccceeEEEEEcCCeEecCchHHHHhhhhhc--cCcceeEEEeecccccccccc---hhHHHHHHHhC-CCCEEEE
Confidence                                    12344444444  478888887777543333333   44555555553 6889999


Q ss_pred             cCCC-HhhHHHH-HHcCCCEEEEccccc-CCCCHHHHHHHHH
Q 031554          109 GGLG-PSTIAEA-ASAGANCIVAGSSVF-GAPEPAHVISLMR  147 (157)
Q Consensus       109 GGI~-~~~i~~~-~~~Gad~vV~GSai~-~~~d~~~~~~~l~  147 (157)
                      ||++ .+++.++ ...+++++++||++. +.-++.+.-+.|+
T Consensus       271 GGi~s~~di~~ll~~~~v~gv~~gs~~~~~~~si~elK~~L~  312 (323)
T d1jvna1         271 SGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLL  312 (323)
T ss_dssp             SCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhCCCeEEEEhhHHHcCCCCHHHHHHHHH
Confidence            9999 6998764 567899999999975 4455555444443

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.0019  Score=49.86  Aligned_cols=131  Identities=15%  Similarity=0.121  Sum_probs=81.1

Q ss_pred             HHHHhCCCCEEEEcccC-----------C----c----------chHHHHHHHHHHc-C--CceEEEecCCC------CH
Q 031554           10 EPLGKAGASGFTFHVEI-----------S----K----------DNWQELVQRIKSK-G--MRPGVALKPGT------SV   55 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~-----------~----~----------~~~~~~i~~ir~~-g--~~~gl~l~~~t------~~   55 (157)
                      ..+.++|+|+|-+|.-.           .    |          ..+.++++++|+. |  +-+|+=+++.+      ..
T Consensus       148 ~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~  227 (330)
T d1ps9a1         148 QLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTF  227 (330)
T ss_dssp             HHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCH
T ss_pred             HHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCH
Confidence            34578999999999631           1    0          1226788888885 4  44565565433      23


Q ss_pred             HhHHh---hHhcCCCCCeEEEEeee-----CCCCCcccchh-HHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-C
Q 031554           56 EEVYP---LVEGANPVEMVLVMTVE-----PGFGGQKFMPE-MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-A  124 (157)
Q Consensus        56 ~~~~~---~~~~~~~~d~vl~m~v~-----pG~~gq~~~~~-~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-a  124 (157)
                      +...+   .++- .++|++.+..-.     |.... .+.+. .....+++|+. .++++.+-|||+ ++.+.++++.| +
T Consensus       228 ~~~~~~~~~l~~-~g~d~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~~ae~~l~~g~~  304 (330)
T d1ps9a1         228 AETVELAQAIEA-AGATIINTGIGWHEARIPTIAT-PVPRGAFSWVTRKLKGH-VSLPLVTTNRINDPQVADDILSRGDA  304 (330)
T ss_dssp             HHHHHHHHHHHH-HTCSEEEEEECBTTCSSCSSST-TSCTTTTHHHHHHHTTS-CSSCEEECSSCCSHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHH-hhhhhhhcccccccccccccCC-CCcchhHHHHHHHHHhh-CCceEEEeCCCCCHHHHHHHHHCCCc
Confidence            33222   2222 368888764321     11111 11111 23334555655 368889999996 89999999998 9


Q ss_pred             CEEEEcccccCCCCHHHHH
Q 031554          125 NCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       125 d~vV~GSai~~~~d~~~~~  143 (157)
                      |.|-+|+++...||+...+
T Consensus       305 D~V~~gR~~iadP~~~~k~  323 (330)
T d1ps9a1         305 DMVSMARPFLADAELLSKA  323 (330)
T ss_dssp             SEEEESTHHHHCTTHHHHH
T ss_pred             chhHhhHHHHhChhHHHHH
Confidence            9999999998878875443

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=97.36  E-value=0.00077  Score=52.91  Aligned_cols=132  Identities=19%  Similarity=0.237  Sum_probs=78.3

Q ss_pred             HHHHhCCCCEEEEcccCC----------------------cc---hHHHHHHHHHHc-C-CceEEEecCCCCH-------
Q 031554           10 EPLGKAGASGFTFHVEIS----------------------KD---NWQELVQRIKSK-G-MRPGVALKPGTSV-------   55 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~~----------------------~~---~~~~~i~~ir~~-g-~~~gl~l~~~t~~-------   55 (157)
                      ..+.++|+|.|-+|.--.                      ++   .+.++++.+|+. | -.+++-+++.+..       
T Consensus       165 ~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~  244 (364)
T d1icpa_         165 RNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTN  244 (364)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSC
T ss_pred             HHHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEecccccccCCcCcc
Confidence            345789999999995211                      00   126788888886 4 2467777664321       


Q ss_pred             -H--hHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcc
Q 031554           56 -E--EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGS  131 (157)
Q Consensus        56 -~--~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GS  131 (157)
                       +  .+.....+ ...|+..+-...|......+..........+++.. +.++.+.||++++.+.+++.. +||.|-+|+
T Consensus       245 ~~~~~l~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~vi~~g~~~~~~ae~~l~~g~aD~V~~gR  322 (364)
T d1icpa_         245 PTALGLYMVESL-NKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAY-KGTFIVAGGYDREDGNRALIEDRADLVAYGR  322 (364)
T ss_dssp             HHHHHHHHHHHH-GGGCCSEEEEECCSCCC------CCCCSHHHHHHC-CSCEEEESSCCHHHHHHHHHTTSCSEEEESH
T ss_pred             hHHHHHHHHHHh-hccceeeeeeecCcccccccccccHHHHHHHHHhc-CCCEEEECCCCHHHHHHHHHcCCCceehhHH
Confidence             1  11111111 45565555545555443333322333344455553 567889999999999876665 599999999


Q ss_pred             cccCCCCHHHHH
Q 031554          132 SVFGAPEPAHVI  143 (157)
Q Consensus       132 ai~~~~d~~~~~  143 (157)
                      ++...+|+-..+
T Consensus       323 ~~iadPd~~~k~  334 (364)
T d1icpa_         323 LFISNPDLPKRF  334 (364)
T ss_dssp             HHHHCTTHHHHH
T ss_pred             HHHHCccHHHHH
Confidence            998888875443

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=0.0031  Score=47.09  Aligned_cols=125  Identities=16%  Similarity=0.155  Sum_probs=83.6

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHH--------------------------H--cCCceEEEecCCCCHHh
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIK--------------------------S--KGMRPGVALKPGTSVEE   57 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir--------------------------~--~g~~~gl~l~~~t~~~~   57 (157)
                      ..++..+.++||+.|.|+.-.+.+...++++++|                          .  ....+.+.|....-++.
T Consensus        78 ~~~i~~~LD~Ga~GIivP~v~s~eea~~~v~~~~ypP~G~Rg~~~~~~~~~~~~~~~~~~~~n~~~~vi~~IEt~~av~n  157 (253)
T d1dxea_          78 PVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDN  157 (253)
T ss_dssp             HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHT
T ss_pred             HHHHHHHHhcCccEEEecccCCHHHHHHHHHhheeCCCCCcCcCcceeccccccccccccccccceEEEeecccHHHHHH
Confidence            3578899999999999985432222244444321                          0  12234555655556677


Q ss_pred             HHhhHhcCCCCCeEEEE----eeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554           58 VYPLVEGANPVEMVLVM----TVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        58 ~~~~~~~~~~~d~vl~m----~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS  131 (157)
                      +++++.. +++|.+.+.    +..-|..||...|+..+.++++.+..  .++...+= .-+++.+..+.+.|++.++.|+
T Consensus       158 leeI~av-~giD~i~iGp~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~-~~~~~~~~~~~~~G~~~i~~g~  235 (253)
T d1dxea_         158 VDAIAAT-EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGIL-APVEADARRYLEWGATFVAVGS  235 (253)
T ss_dssp             HHHHHTS-TTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEE-CCSHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHhcc-CCCceEEEecCcHHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEe-cCCHHHHHHHHHcCCCEEEehH
Confidence            8888877 999999986    23347777777777666555554431  35555443 3478999999999999999998


Q ss_pred             c
Q 031554          132 S  132 (157)
Q Consensus       132 a  132 (157)
                      -
T Consensus       236 D  236 (253)
T d1dxea_         236 D  236 (253)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.27  E-value=0.0023  Score=49.52  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=79.8

Q ss_pred             HHHHhCCCCEEEEcccCC---------------c----------chHHHHHHHHHHc-C--CceEEEecCCC--------
Q 031554           10 EPLGKAGASGFTFHVEIS---------------K----------DNWQELVQRIKSK-G--MRPGVALKPGT--------   53 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~~---------------~----------~~~~~~i~~ir~~-g--~~~gl~l~~~t--------   53 (157)
                      ..+.++|+|.|-+|.-..               |          ..+.++++.+|+. |  +.+|+=+++++        
T Consensus       156 ~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~  235 (340)
T d1djqa1         156 KRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIE  235 (340)
T ss_dssp             HHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCC
T ss_pred             HHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccCCCCc
Confidence            455789999999995210               0          1226677888874 3  34565554321        


Q ss_pred             CH---HhHHhhHhcCCCCCeEEEEeeeC---CC---CCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc
Q 031554           54 SV---EEVYPLVEGANPVEMVLVMTVEP---GF---GGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA  122 (157)
Q Consensus        54 ~~---~~~~~~~~~~~~~d~vl~m~v~p---G~---~gq~~~-~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~  122 (157)
                      +.   .....+.+  ..+|++-+-....   +.   ..+.+. ...+...+.+|+.. +.+|.+-|||+ ++.+.++++.
T Consensus       236 ~e~~~~~~~~l~~--~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~G~i~~~~~a~~~l~~  312 (340)
T d1djqa1         236 AEVDGQKFVEMAD--SLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS-KKPVLGVGRYTDPEKMIEIVTK  312 (340)
T ss_dssp             TTTHHHHHHHHHT--TTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC-SSCEEECSCCCCHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHh--hccceeeeeecccccccccccccccCCccccHHHHHHHHHHc-CCeEEEECCCCCHHHHHHHHHC
Confidence            11   12233332  5788876532211   00   011111 12344456666653 67888889996 9999999999


Q ss_pred             C-CCEEEEcccccCCCCHHHHH
Q 031554          123 G-ANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus       123 G-ad~vV~GSai~~~~d~~~~~  143 (157)
                      | +|.|-+|+.+...||+...+
T Consensus       313 G~aDlV~~gR~~iadPdl~~k~  334 (340)
T d1djqa1         313 GYADIIGCARPSIADPFLPQKV  334 (340)
T ss_dssp             TSCSBEEESHHHHHCTTHHHHH
T ss_pred             CCccchhhHHHHHHCccHHHHH
Confidence            8 99999999999888865543

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.19  E-value=0.0048  Score=48.39  Aligned_cols=118  Identities=17%  Similarity=0.245  Sum_probs=76.6

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      .+|+ ....+.+.|. .-.+|.+...+...+..+..++.  ...++.++... ...+.+..+++  .++|++++-+.+ |
T Consensus        56 ~~~~-mA~~ls~~Gg-lgvlhr~~~~~e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~--agvd~ivID~A~-G  130 (365)
T d1zfja1          56 TGSK-MAIAIARAGG-LGVIHKNMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFE--AGADAIVIDTAH-G  130 (365)
T ss_dssp             CSHH-HHHHHHHTTC-EEEECCSSCHHHHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHH--HTCSEEEECCSC-T
T ss_pred             CCHH-HHHHHHHCCC-ceEEcCccCHHHHHHHhhhhhhccCceEEEEEeccCchHHHHHHHHHH--cCCCEEEEECCc-c
Confidence            3455 4445677775 34467664433223444444443  34467777533 34566777765  489998764322 2


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                           ......+.++++|+.+++..|.+..=.|.+.+..|.++|||++.+|
T Consensus       131 -----~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVG  176 (365)
T d1zfja1         131 -----HSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVG  176 (365)
T ss_dssp             -----TCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             -----cccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEee
Confidence                 3445677788888888888886655566899999999999999998

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=97.18  E-value=0.0057  Score=47.74  Aligned_cols=128  Identities=14%  Similarity=0.239  Sum_probs=81.1

Q ss_pred             HHHHhCCCCEEEEcccCC----------------------cc---hHHHHHHHHHHc-CC-ceEEEecCC----------
Q 031554           10 EPLGKAGASGFTFHVEIS----------------------KD---NWQELVQRIKSK-GM-RPGVALKPG----------   52 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~~----------------------~~---~~~~~i~~ir~~-g~-~~gl~l~~~----------   52 (157)
                      ..+.++|.|.|-+|.--.                      ++   .+.++++.+|+. |. .+|+-+++.          
T Consensus       167 ~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg  246 (363)
T d1vyra_         167 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGP  246 (363)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCT
T ss_pred             HHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccchhhcc
Confidence            445789999999994221                      01   226788888885 32 367777652          


Q ss_pred             CCHHhHHhhH---hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEE
Q 031554           53 TSVEEVYPLV---EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIV  128 (157)
Q Consensus        53 t~~~~~~~~~---~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV  128 (157)
                      +..+...+++   +- .++|++-+-.... .++..+.....   +++|+.. +.++.+.|+++++.+.++++.| +|.|.
T Consensus       247 ~~~~e~~~~~~~l~~-~gvd~i~vs~~~~-~~~~~~~~~~~---~~~~~~~-~~~vi~~G~~t~~~ae~~l~~G~~DlV~  320 (363)
T d1vyra_         247 NEEADALYLIEELAK-RGIAYLHMSETDL-AGGKPYSEAFR---QKVRERF-HGVIIGAGAYTAEKAEDLIGKGLIDAVA  320 (363)
T ss_dssp             THHHHHHHHHHHHHH-TTCSEEEEECCBT-TBCCCCCHHHH---HHHHHHC-CSEEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred             cchHHHHHHHHHHHh-cCCeeeecccCCc-cCCccccHHHH---HHHHHhc-CceEEecCCCCHHHHHHHHHCCCcceeh
Confidence            1233322222   22 4689987643221 22333333332   3334443 5678888999999999999999 89999


Q ss_pred             EcccccCCCCHHHHH
Q 031554          129 AGSSVFGAPEPAHVI  143 (157)
Q Consensus       129 ~GSai~~~~d~~~~~  143 (157)
                      +|+++...||+...+
T Consensus       321 ~gR~liadP~~~~K~  335 (363)
T d1vyra_         321 FGRDYIANPDLVARL  335 (363)
T ss_dssp             ESHHHHHCTTHHHHH
T ss_pred             hhHHHHHCccHHHHH
Confidence            999999888875544

>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium berghei [TaxId: 5821]

Probab=97.16  E-value=0.00088  Score=51.97  Aligned_cols=63  Identities=17%  Similarity=0.307  Sum_probs=42.6

Q ss_pred             HHHHHHhhCCCCcEEEEcCCCHh--hHHHH------HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554           92 KVRSLRNRYPSLDIEVDGGLGPS--TIAEA------ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  155 (157)
Q Consensus        92 ki~~l~~~~~~~~I~vdGGI~~~--~i~~~------~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~  155 (157)
                      .++.+|+..++..|.+ =||..+  +..++      .+.|++.+|+|+.|..++||.++++.+++.+.+.++
T Consensus       250 el~~iR~~~~~~~iL~-PGIGaQggDq~rv~~~~~a~~~g~~~ivvgR~I~~A~dp~~aa~~i~~~i~~~~~  320 (324)
T d2fdsa1         250 EMKIIRNKFPDSYILS-PGIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQIIQIFK  320 (324)
T ss_dssp             HHHHHHHHSTTCCEEE-CCC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCeEEe-CcccCCCCCHHHHhChhhhhhcCceEEEeChhhccCCCHHHHHHHHHHHHHHHHH
Confidence            4555566656655433 444432  23333      245889999999999999999999999998877654

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=0.0043  Score=46.58  Aligned_cols=118  Identities=20%  Similarity=0.234  Sum_probs=72.0

Q ss_pred             HHHhCCCCEEEEcccCC----------cchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554           11 PLGKAGASGFTFHVEIS----------KDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus        11 ~~~~~gad~v~vh~e~~----------~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      .....+++....|....          .....+......+.+..+.+-. ......+..+.+.+  .++|.|.+-  +.|
T Consensus       118 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~--aGvd~i~vs--n~g  193 (310)
T d1vcfa1         118 LVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRD--LPLAAVDVA--GAG  193 (310)
T ss_dssp             HHHHHTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTT--SCCSEEECC--CBT
T ss_pred             HHHhcCCCeeccccccchhhhcccccccccHHHHHHHHhhccCCceeeeecCcccHHHHHHHHH--cCCCEEEec--ccc
Confidence            33445777777764211          1111334444444455444432 22345666766665  589988753  222


Q ss_pred             CCCcccc--------------------hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554           80 FGGQKFM--------------------PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        80 ~~gq~~~--------------------~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                        |..+.                    ...+..+.++++..++++|.+||||+ ..++-+.+..|||.+-+||++.
T Consensus       194 --g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l  267 (310)
T d1vcfa1         194 --GTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLL  267 (310)
T ss_dssp             --SCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred             --ccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHH
Confidence              21110                    11344566666677789999999999 6889888999999999999864

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0027  Score=49.50  Aligned_cols=141  Identities=13%  Similarity=0.135  Sum_probs=85.8

Q ss_pred             HHHhCCCCEEEEcccCCcc--------h--HH----HHHHHHHHc----CCceEEEecCCCCHHhHHhhHhc--CCCCCe
Q 031554           11 PLGKAGASGFTFHVEISKD--------N--WQ----ELVQRIKSK----GMRPGVALKPGTSVEEVYPLVEG--ANPVEM   70 (157)
Q Consensus        11 ~~~~~gad~v~vh~e~~~~--------~--~~----~~i~~ir~~----g~~~gl~l~~~t~~~~~~~~~~~--~~~~d~   70 (157)
                      ...+.+||++.+..-.+.-        .  ..    ..++..+..    ..-+.+-+.|+.....+....+.  ...+|.
T Consensus       171 ~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~g  250 (367)
T d1d3ga_         171 RVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDG  250 (367)
T ss_dssp             HHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCE
T ss_pred             HHhhhcccccccccccccccccccccccchhhhHHHHHHHhhhhcccccCCccccccCcccchhhhhhhHHHHHhhhhhe
Confidence            3366799999998644321        0  01    111222211    12334458888775443333221  146777


Q ss_pred             EEEEeeeC---------------CCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccc
Q 031554           71 VLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        71 vl~m~v~p---------------G~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai  133 (157)
                      |......+               |.+|....+-.+..++.+++.. .+++|..-|||. .+++.++..+|||.|=+||++
T Consensus       251 i~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~  330 (367)
T d1d3ga_         251 LIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTAL  330 (367)
T ss_dssp             EEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred             eecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHHHHHHcCCCHHHhhHHH
Confidence            76642221               2224343455677788887764 479999999998 799999999999999999985


Q ss_pred             -cCCCCH-HHHHHHHHHHHH
Q 031554          134 -FGAPEP-AHVISLMRKSVE  151 (157)
Q Consensus       134 -~~~~d~-~~~~~~l~~~~~  151 (157)
                       |+.++. .+-.+.|++.++
T Consensus       331 ~~~Gp~ii~~I~~~L~~~l~  350 (367)
T d1d3ga_         331 TFWGPPVVGKVKRELEALLK  350 (367)
T ss_dssp             HHHCTHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHH
Confidence             665554 344455666554

>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate decarboxylase {Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]

Probab=97.09  E-value=0.00022  Score=55.44  Aligned_cols=62  Identities=16%  Similarity=0.287  Sum_probs=44.3

Q ss_pred             HHHHHHhhCCCCcEEEEcCCCH--hhHHHH------HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554           92 KVRSLRNRYPSLDIEVDGGLGP--STIAEA------ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus        92 ki~~l~~~~~~~~I~vdGGI~~--~~i~~~------~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      .++.+|+..++..|.+ =||..  .+..++      .+.|+|.+|+|+.|++++||.++++.+++.++..+
T Consensus       248 e~~~ir~~~~~~~iL~-PGIGaQggDq~rv~t~~~a~~~g~~~ivvgR~I~~a~dp~~aa~~~~~ei~~~l  317 (323)
T d2q8za1         248 EMNYIRTYFPNCYILS-PGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAIL  317 (323)
T ss_dssp             HHHHHHHHSTTCCEEE-CCSSTTCCCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCeEEc-CCccccCCCHhHhhCHHHHhhcCceEEEEChhhcCCCCHHHHHHHHHHHHHHHH
Confidence            4555666666766654 55553  223332      35689999999999999999999999888777654

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=97.05  E-value=0.0098  Score=46.88  Aligned_cols=79  Identities=23%  Similarity=0.492  Sum_probs=61.1

Q ss_pred             ceEEEecC-CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc
Q 031554           44 RPGVALKP-GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA  122 (157)
Q Consensus        44 ~~gl~l~~-~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~  122 (157)
                      .+|.++.. ....+.+..+.+  .++|++.+-+.+ |     .....++.++++|+.+++++|.+.+-.|.+.+..|.++
T Consensus       141 ~vgaAvg~~~~~~~ra~~L~~--aG~D~ivID~Ah-G-----~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~  212 (388)
T d1eepa_         141 RVGAAVSIDIDTIERVEELVK--AHVDILVIDSAH-G-----HSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISV  212 (388)
T ss_dssp             CCEEEECSCTTHHHHHHHHHH--TTCSEEEECCSC-C-----SSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTT
T ss_pred             hhhhccCCCHHHHHHHHHHHh--hccceeeeeccc-c-----chHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHhc
Confidence            36777653 334567777776  589999876444 2     33456788899999889999988888889999999999


Q ss_pred             CCCEEEEc
Q 031554          123 GANCIVAG  130 (157)
Q Consensus       123 Gad~vV~G  130 (157)
                      |||++-+|
T Consensus       213 GaD~VkVG  220 (388)
T d1eepa_         213 GADCLKVG  220 (388)
T ss_dssp             TCSEEEEC
T ss_pred             CCCeeeec
Confidence            99999998

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.02  E-value=0.0044  Score=46.92  Aligned_cols=141  Identities=15%  Similarity=0.262  Sum_probs=81.1

Q ss_pred             HHHHHhCCCCEEEEcc----cCCcc----hHHHHHHHHHHcCCceEEEecC---C-----CCHH----hHHhhHhcCCCC
Q 031554            9 VEPLGKAGASGFTFHV----EISKD----NWQELVQRIKSKGMRPGVALKP---G-----TSVE----EVYPLVEGANPV   68 (157)
Q Consensus         9 i~~~~~~gad~v~vh~----e~~~~----~~~~~i~~ir~~g~~~gl~l~~---~-----t~~~----~~~~~~~~~~~~   68 (157)
                      ++.+...|+|.|-++.    ....+    .+.++.++++++|+.+.+.+-|   .     +..+    ..+.+.+  .++
T Consensus       112 v~~a~~~GadaVk~lv~~~~d~~~e~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e--~Ga  189 (291)
T d1to3a_         112 AQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGD--SGA  189 (291)
T ss_dssp             HHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTT--SSC
T ss_pred             HHHHHhccCceEEEEEeeCCcccHHHHHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHh--cCC
Confidence            5677888999997752    21111    1245666678889988775421   1     1111    2233333  367


Q ss_pred             CeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCCHhhHHH----HHHcCCCEEEEcccccCC----CCH
Q 031554           69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLGPSTIAE----AASAGANCIVAGSSVFGA----PEP  139 (157)
Q Consensus        69 d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~~~~i~~----~~~~Gad~vV~GSai~~~----~d~  139 (157)
                      |.+-+  -.||.... .........+++.... ..+ |...||.+.+.+.+    ..++||.+|++|+.||+.    +++
T Consensus       190 Di~K~--~~p~~~~~-~~~~~~~~~~~~~~~~-~~p~vvLs~G~~~~~f~~~l~~A~~aGa~G~~~GR~iw~~~~~~~~~  265 (291)
T d1to3a_         190 DLYKV--EMPLYGKG-ARSDLLTASQRLNGHI-NMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSSVIGLPDT  265 (291)
T ss_dssp             SEEEE--CCGGGGCS-CHHHHHHHHHHHHHTC-CSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGGGTTCSCH
T ss_pred             cEEEE--ecCCCchh-hhHHHHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHHHHHCCCeEEEeChhhhhCcccCccH
Confidence            76643  12553221 2223344444444443 445 66778888765544    567999999999999974    343


Q ss_pred             H--------HHHHHHHHHHHHHhh
Q 031554          140 A--------HVISLMRKSVEDAQK  155 (157)
Q Consensus       140 ~--------~~~~~l~~~~~~~~~  155 (157)
                      +        ..+++|.++++++-+
T Consensus       266 ~~~l~~~~~~~l~~l~~i~~~~~~  289 (291)
T d1to3a_         266 ELMLRDVSAPKLQRLGEIVDEMMG  289 (291)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3        455666666666544

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.95  E-value=0.0043  Score=48.91  Aligned_cols=118  Identities=14%  Similarity=0.177  Sum_probs=74.1

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc------------CCceEEEecCCCCHH-hHHhhHhcCCCCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK------------GMRPGVALKPGTSVE-EVYPLVEGANPVE   69 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~------------g~~~gl~l~~~t~~~-~~~~~~~~~~~~d   69 (157)
                      ..|+ +...+.++|.= -.+|.....+...+.++.+++.            ...++.++.+..... .+..+.+  .++|
T Consensus        58 t~~~-mA~als~~GGL-GvLhr~~~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~--agv~  133 (378)
T d1jr1a1          58 TEAG-MAIAMALTGGI-GFIHHNCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLAL--AGVD  133 (378)
T ss_dssp             CSHH-HHHHHHHHTCE-EEECCSSCHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHH--HTCC
T ss_pred             CCHH-HHHHHHHCCCe-eEEcCCCCHHHHHHHHheehhhhhCcccccccccCEEEEEEeccCHHHHHHHHHHHh--hccc
Confidence            3444 44566777763 3345443222224444555443            234677886654433 3333333  5789


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      ++.+-..++      ......+.++.+++..++.+|.+..=.+.+.+..|.++|||++.+|
T Consensus       134 vi~id~a~g------~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVG  188 (378)
T d1jr1a1         134 VVVLDSSQG------NSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVG  188 (378)
T ss_dssp             EEEECCSSC------CSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             eEeeeccCc------cchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeec
Confidence            987754442      2345677788888888888886666666899999999999999998

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=96.92  E-value=0.012  Score=45.87  Aligned_cols=52  Identities=19%  Similarity=0.233  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEEEcccccCCCCHHHH
Q 031554           90 MDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus        90 ~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~GSai~~~~d~~~~  142 (157)
                      ....+.+|+. .+.+|.+-||++++.+.++++.| +|.|-+|+.+...||+...
T Consensus       296 ~~~~~~ik~~-~~~pv~~~Gg~~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~K  348 (380)
T d1q45a_         296 AKLMKSLRMA-YNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSR  348 (380)
T ss_dssp             HHHHHHHHHH-SCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred             HHHHHHHhhc-cCCcEEeCCCCCHHHHHHHHHcCCccchhhhHHHHHCccHHHH
Confidence            3345555555 36789999999999999988887 9999999999988886554

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.89  E-value=0.015  Score=45.42  Aligned_cols=128  Identities=16%  Similarity=0.228  Sum_probs=79.3

Q ss_pred             HHHHhCCCCEEEEcccCC----------------------cc---hHHHHHHHHHHc-C-CceEEEecCCCC--------
Q 031554           10 EPLGKAGASGFTFHVEIS----------------------KD---NWQELVQRIKSK-G-MRPGVALKPGTS--------   54 (157)
Q Consensus        10 ~~~~~~gad~v~vh~e~~----------------------~~---~~~~~i~~ir~~-g-~~~gl~l~~~t~--------   54 (157)
                      ..+.++|.|+|-+|.-..                      ++   ...++++.+|+. | ..+++.+++...        
T Consensus       170 ~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~  249 (374)
T d1gwja_         170 QRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDE  249 (374)
T ss_dssp             HHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSC
T ss_pred             HHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccccCCcccc
Confidence            445789999999995211                      01   126788888885 3 346666665331        


Q ss_pred             HH-h---HHhhHhcCCCCCeEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEE
Q 031554           55 VE-E---VYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCI  127 (157)
Q Consensus        55 ~~-~---~~~~~~~~~~~d~vl~m~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~v  127 (157)
                      .+ .   +...++. ..+|++-+.  .|.+.+..  +.+...   +.+++.. +.++.+-|+++++.+.++++.| ||.|
T Consensus       250 ~~~~~~~~~~~ld~-~~i~~~~~~--~~~~~~~~~~~~~~~~---~~i~~~~-~~pvi~~G~i~~~~ae~~l~~g~aDlV  322 (374)
T d1gwja_         250 PEAMAFYLAGELDR-RGLAYLHFN--EPDWIGGDITYPEGFR---EQMRQRF-KGGLIYCGNYDAGRAQARLDDNTADAV  322 (374)
T ss_dssp             HHHHHHHHHHHHHH-HTCSEEEEE--CSCBTTBCCCCCTTHH---HHHHHHC-CSEEEEESSCCHHHHHHHHHTTSCSEE
T ss_pred             hHHHHHHhhccccc-cCceEEEec--cCcccCCCcchhHHHH---HHHHHHc-CCCEEEECCcCHHHHHHHHHcCCCcEe
Confidence            11 1   1112222 367877654  33332222  222222   3344543 5789999999999999988887 9999


Q ss_pred             EEcccccCCCCHHHHHH
Q 031554          128 VAGSSVFGAPEPAHVIS  144 (157)
Q Consensus       128 V~GSai~~~~d~~~~~~  144 (157)
                      .+|+++...+|+-..++
T Consensus       323 ~~gR~~iadPd~~~K~~  339 (374)
T d1gwja_         323 AFGRPFIANPDLPERFR  339 (374)
T ss_dssp             EESHHHHHCTTHHHHHH
T ss_pred             hhhHHHHHCccHHHHHH
Confidence            99999998888765443

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=96.81  E-value=0.0067  Score=51.71  Aligned_cols=118  Identities=17%  Similarity=0.174  Sum_probs=79.0

Q ss_pred             hCCCCEEEEcccCCcc---hHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc---
Q 031554           14 KAGASGFTFHVEISKD---NWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF---   85 (157)
Q Consensus        14 ~~gad~v~vh~e~~~~---~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~---   85 (157)
                      .-|.|.++-..-..-+   .+.+.+..+|+.  |+.+|+-+.....++.+....-- .++|+|.+-+-+-|++..+.   
T Consensus       538 ~~G~~~iSP~~h~di~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~k-a~~D~I~IdG~eGGTGAap~~~~  616 (771)
T d1ea0a2         538 TPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAK-ANADIILISGNSGGTGASPQTSI  616 (771)
T ss_dssp             CTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHH-TTCSEEEEECTTCCCSSEETTHH
T ss_pred             CCCCCccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHh-cCCCEEEEecCCCccccccHHHh
Confidence            3477777765322222   225667777873  78889988778888776544322 68999999888866664332   


Q ss_pred             -------chhHHHHHHHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554           86 -------MPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        86 -------~~~~~~ki~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa  132 (157)
                             .....+-.+.|.+.  ..++.+.+|||+. +.++......|||.+-+|++
T Consensus       617 d~~GlP~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~  673 (771)
T d1ea0a2         617 KFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTA  673 (771)
T ss_dssp             HHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHH
T ss_pred             hcCCcCHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHH
Confidence                   21222222333332  3569999999998 78999999999999999975

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.81  E-value=0.0041  Score=48.17  Aligned_cols=114  Identities=18%  Similarity=0.282  Sum_probs=70.1

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI  111 (157)
                      +.++++|+.-..+.+.-...++ +......+  .++|.+.+ +-+ |...-...+...+-+.++++. ..+++|.+||||
T Consensus       207 ~~i~~l~~~~~~pii~Kgi~~~-~da~~a~~--~G~d~i~v-snh-ggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGI  281 (349)
T d1tb3a1         207 NDLSLLQSITRLPIILKGILTK-EDAELAMK--HNVQGIVV-SNH-GGRQLDEVSASIDALREVVAAVKGKIEVYMDGGV  281 (349)
T ss_dssp             HHHHHHHTTCCSCEEEEEECSH-HHHHHHHH--TTCSEEEE-CCG-GGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSC
T ss_pred             HHHHHHHHhcCCCcccchhhhh-HHHHHHHH--hhccceee-ecc-ccccccccccchhhcceeeeccCCCeeEEeccCc
Confidence            5677888863223222222233 33333333  68999987 223 322223345677777777765 356899999999


Q ss_pred             C-HhhHHHHHHcCCCEEEEccccc-C-C----CCHHHHHHHHHHHHH
Q 031554          112 G-PSTIAEAASAGANCIVAGSSVF-G-A----PEPAHVISLMRKSVE  151 (157)
Q Consensus       112 ~-~~~i~~~~~~Gad~vV~GSai~-~-~----~d~~~~~~~l~~~~~  151 (157)
                      + .-++-..+..|||.+-+|+.+. . +    +-..+.++.|++.++
T Consensus       282 R~G~Dv~KALALGA~~V~igrp~L~~la~~G~~gv~~~l~~l~~EL~  328 (349)
T d1tb3a1         282 RTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELH  328 (349)
T ss_dssp             CSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCEEEEChHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            9 5888888899999999998654 3 1    123344555555444

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=96.68  E-value=0.016  Score=39.04  Aligned_cols=117  Identities=12%  Similarity=0.115  Sum_probs=71.8

Q ss_pred             EcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-
Q 031554           22 FHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-  100 (157)
Q Consensus        22 vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-  100 (157)
                      +..|..+-...-+-..++.+|.++ +.+.+++|.+.+...... ..+|.|.+-...+. .    .+...+-++++++.. 
T Consensus        11 ~~gD~H~lG~~mva~~l~~~G~~V-~~LG~~~p~e~iv~a~~~-~~~d~v~lS~~~~~-~----~~~~~~~~~~l~~~~~   83 (137)
T d1ccwa_          11 IGSDCHAVGNKILDHAFTNAGFNV-VNIGVLSPQELFIKAAIE-TKADAILVSSLYGQ-G----EIDCKGLRQKCDEAGL   83 (137)
T ss_dssp             ETTCCCCHHHHHHHHHHHHTTCEE-EEEEEEECHHHHHHHHHH-HTCSEEEEEECSST-H----HHHHTTHHHHHHHTTC
T ss_pred             cCCChhHHHHHHHHHHHHHCCCeE-EecccccCHHHHHHHHHh-cCCCEEEEeecccc-c----hHHHHHHHHHHHHhcc
Confidence            444544434133444567788875 345556787765554443 57899887544432 1    222333355566553 


Q ss_pred             CCCcEEEEcCCC------HhhHHHHHHcCCCEEEEcccccCC-CCHHHHHHHHHHHHH
Q 031554          101 PSLDIEVDGGLG------PSTIAEAASAGANCIVAGSSVFGA-PEPAHVISLMRKSVE  151 (157)
Q Consensus       101 ~~~~I~vdGGI~------~~~i~~~~~~Gad~vV~GSai~~~-~d~~~~~~~l~~~~~  151 (157)
                      .+++|.+.|++.      ++-.+++.+.|+|.+      |.. .++.+.++.+++.++
T Consensus        84 ~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~i------f~~~t~~~~~~~~l~~~l~  135 (137)
T d1ccwa_          84 EGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRV------YAPGTPPEVGIADLKKDLN  135 (137)
T ss_dssp             TTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEE------CCTTCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCcCCCccccHHHHHHHHHcCCCEE------ECCCCCHHHHHHHHHHHhC
Confidence            578999999884      445667889998854      533 467888888887654

>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.66  E-value=0.011  Score=43.94  Aligned_cols=126  Identities=20%  Similarity=0.278  Sum_probs=77.0

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhc-CCCCCe--
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEG-ANPVEM--   70 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~-~~~~d~--   70 (157)
                      ..++.+.|++++.+.        .|. ++.+.+-++.+.++|+.+.+-+.-+-       ..+.+...++. ......  
T Consensus        79 a~mlkd~g~~yviiGHSErR~~~~E~-~~~i~~K~~~~~~~~l~pI~CiGE~~~e~~~~~~~~~~~~ql~~~~~~~~~~~  157 (251)
T d2btma_          79 PVMLKDLGVTYVILGHSERRQMFAET-DETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQ  157 (251)
T ss_dssp             HHHHHHHTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHhCcceeeecchhhhhhhcch-HHHHHHHHHHhhcCCCeEEEEecccccccccchhhhHHHHHHHhhhcccchhc
Confidence            367889999999996        343 33447778888889999888875210       11122222211 022220  


Q ss_pred             E--EEEeeeC----CCCCcccchh----HHHHHHHHHhh------CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccc
Q 031554           71 V--LVMTVEP----GFGGQKFMPE----MMDKVRSLRNR------YPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSV  133 (157)
Q Consensus        71 v--l~m~v~p----G~~gq~~~~~----~~~ki~~l~~~------~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai  133 (157)
                      .  ++..=+|    |+ |+.-.++    +...|++.-..      ..+++|.-.|+++++|+.++.. .++|++-+|+|-
T Consensus       158 ~~~iiIAYEPvWAIGT-G~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVG~AS  236 (251)
T d2btma_         158 VKQAVIAYEPIWAIGT-GKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGAS  236 (251)
T ss_dssp             HTTCEEEECCGGGTTT-SCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEESSCCTTTHHHHHTSTTCCEEEESGGG
T ss_pred             cceEEEEecccccccc-ccCCChhhhhhhHHHHHHHHHhhcchhhcccCcEEeeCCCCHhHHHHHhcCCCCCEEEechHh
Confidence            0  1123356    54 5444443    33344443221      1468999999999999999865 688999999987


Q ss_pred             cCC
Q 031554          134 FGA  136 (157)
Q Consensus       134 ~~~  136 (157)
                      ...
T Consensus       237 l~~  239 (251)
T d2btma_         237 LEP  239 (251)
T ss_dssp             SSH
T ss_pred             CCH
Confidence            753

>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0093  Score=44.43  Aligned_cols=125  Identities=18%  Similarity=0.224  Sum_probs=76.1

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hH----HhhHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EV----YPLVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~----~~~~~~~~~   67 (157)
                      .+++.+.|++++.+.        .|. ++.+..-++.+.++|+.+.+-+.  .+.+         .+    ...++....
T Consensus        80 a~mlkd~G~~~viiGHSERR~~~~E~-~~~i~~K~~~al~~~l~pIlCvG--E~~~~r~~~~~~~~~~~Ql~~~~~~~~~  156 (255)
T d1trea_          80 AAMLKDIGAQYIIIGHSERRTYHKES-DELIAKKFAVLKEQGLTPVLCIG--ETEAENEAGKTEEVCARQIDAVLKTQGA  156 (255)
T ss_dssp             HHHHHHHTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHhccchhhhcccccccccccc-CHHHHHHHHHHHhhheeeEEecc--cchhhhcchhhhhhhhhhhhhhhcccch
Confidence            467899999999986        354 33347778888999999888874  2221         11    122110011


Q ss_pred             C--CeEEEEeeeC----CCCCcccchh----HHHHHHHHH-hh----CCCCcEEEEcCCCHhhHHHHH-HcCCCEEEEcc
Q 031554           68 V--EMVLVMTVEP----GFGGQKFMPE----MMDKVRSLR-NR----YPSLDIEVDGGLGPSTIAEAA-SAGANCIVAGS  131 (157)
Q Consensus        68 ~--d~vl~m~v~p----G~~gq~~~~~----~~~ki~~l~-~~----~~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~GS  131 (157)
                      .  +- ++..-+|    |+ |..-.++    +...|++.- +.    ..+++|.-.|+++++|+.++. ..++|++-+|+
T Consensus       157 ~~~~~-iiIAYEPvWAIGt-G~~a~~~~~~~~~~~ir~~l~~~~~~~~~~v~iLYGGSV~~~N~~~i~~~~~vdG~LVGg  234 (255)
T d1trea_         157 AAFEG-AVIAYEPVWAIGT-GKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGG  234 (255)
T ss_dssp             GGGTT-CEEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESG
T ss_pred             hhccC-cEEEecchhhccc-ccccCcchhhhhHHHHHHHHhhhchhhcCCccEEecCCcCHhHHHHHhcCCCCCEEEech
Confidence            1  11 1223466    54 3333332    233333321 11    135789999999999999875 47999999999


Q ss_pred             cccCCCC
Q 031554          132 SVFGAPE  138 (157)
Q Consensus       132 ai~~~~d  138 (157)
                      |-.+.++
T Consensus       235 ASl~~~~  241 (255)
T d1trea_         235 ASLKADA  241 (255)
T ss_dssp             GGGCHHH
T ss_pred             hhcCHHH
Confidence            9885443

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.63  E-value=0.0091  Score=46.14  Aligned_cols=114  Identities=18%  Similarity=0.263  Sum_probs=70.5

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI  111 (157)
                      +.++++++.+..+.+.-.. ...+......+  .+.|.+.+  .+.|.....+-+...+.+.++++.. ++++|.+||||
T Consensus       214 ~~v~~l~~~~~~~~~~kg~-~~~~da~~a~~--~g~~~~~v--snhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGI  288 (359)
T d1goxa_         214 KDVAWLQTITSLPILVKGV-ITAEDARLAVQ--HGAAGIIV--SNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGV  288 (359)
T ss_dssp             HHHHHHHHHCCSCEEEECC-CSHHHHHHHHH--TTCSEEEE--CCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSC
T ss_pred             HHHHHHHhhcccceeeecc-cchHHHHHHHH--ccccceec--ccccccccccccchhhhchhhhhccCCccceeeccCc
Confidence            4578888875444444333 34444333333  57888765  2344333333445666666666654 57899999999


Q ss_pred             C-HhhHHHHHHcCCCEEEEccccc-C-C----CCHHHHHHHHHHHHH
Q 031554          112 G-PSTIAEAASAGANCIVAGSSVF-G-A----PEPAHVISLMRKSVE  151 (157)
Q Consensus       112 ~-~~~i~~~~~~Gad~vV~GSai~-~-~----~d~~~~~~~l~~~~~  151 (157)
                      + .-++...+..|||.+-+|+.+. . +    +-..+.++.|++.++
T Consensus       289 R~G~Di~KALaLGAd~vgigrp~L~~la~~g~~gv~~~i~~l~~EL~  335 (359)
T d1goxa_         289 RRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFE  335 (359)
T ss_dssp             CSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            9 5888888899999999998644 3 1    123444555555444

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.068  Score=39.71  Aligned_cols=138  Identities=17%  Similarity=0.246  Sum_probs=84.3

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcc------------hHHHHHHHHHHcCCceEE--Eec-CCCCHHhHHhhHhc---CCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKD------------NWQELVQRIKSKGMRPGV--ALK-PGTSVEEVYPLVEG---ANPV   68 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~------------~~~~~i~~ir~~g~~~gl--~l~-~~t~~~~~~~~~~~---~~~~   68 (157)
                      ..++.+.++|++.+.+..|+.+.            ...++++.++++|++++.  .+. ++|..+.++.+..+   -...
T Consensus       134 e~l~~lk~aG~~~i~~~iEs~~~~~~~~~~~~~~~~~~~~~~~a~~~Gi~~~~~~i~G~~et~~d~~~~l~~l~~l~~~~  213 (312)
T d1r30a_         134 SQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPP  213 (312)
T ss_dssp             HHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCC
T ss_pred             HHHHHhhcccceeEecccchhhhhhccCCCCCCHHHHHHHHHHHHHhccceecceEecCcCcHHHHHHHHHHHHhcCCCC
Confidence            45678899999999999988642            114577888888988743  343 45554444433322   1244


Q ss_pred             CeEEEEeee--CCCCCcccc----hhHHHHHHHHHhhCCCCcEEEEcC---CCHhhHHHHHHcCCCEEEEcccccCCC--
Q 031554           69 EMVLVMTVE--PGFGGQKFM----PEMMDKVRSLRNRYPSLDIEVDGG---LGPSTIAEAASAGANCIVAGSSVFGAP--  137 (157)
Q Consensus        69 d~vl~m~v~--pG~~gq~~~----~~~~~ki~~l~~~~~~~~I~vdGG---I~~~~i~~~~~~Gad~vV~GSai~~~~--  137 (157)
                      +.+.+.-..  ||+.-+...    .+.++-+.-.|=..|+..|.+-+|   +..+.......+|||.++.|..+..++  
T Consensus       214 ~~i~~~~~~p~~gT~l~~~~~~~~~e~l~~iA~~Rl~lp~~~i~i~~~~~~~~~~~~~~~L~~Gan~~~~~~~~~t~~~~  293 (312)
T d1r30a_         214 ESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNP  293 (312)
T ss_dssp             SEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBCC
T ss_pred             CeeeeccccCCCCcccccccCCCHHHHHHHHHHHHHhCCCcceEEEechhhcCHHHHHHHHhcCCcEEEecCccccCCCC
Confidence            567666554  454322221    233444555555678888887765   234555667899999999997766443  


Q ss_pred             CHHHHHH
Q 031554          138 EPAHVIS  144 (157)
Q Consensus       138 d~~~~~~  144 (157)
                      ++.+-.+
T Consensus       294 ~~~~~~~  300 (312)
T d1r30a_         294 EEDKDLQ  300 (312)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            4444333

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.0099  Score=47.02  Aligned_cols=97  Identities=18%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchh---HHHHHHHHHh---hCCCCcEE
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE---MMDKVRSLRN---RYPSLDIE  106 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~---~~~ki~~l~~---~~~~~~I~  106 (157)
                      +.+++++.....+-+.....++.....-.-   .++|.+.+.  ++|.......+.   .+..+..+.+   ..++++|.
T Consensus       236 ~~i~~i~~~~~~~~i~kgi~~~~da~~~~~---~G~~~i~vs--nhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~vi  310 (414)
T d1kbia1         236 KDIEELKKKTKLPIVIKGVQRTEDVIKAAE---IGVSGVVLS--NHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVF  310 (414)
T ss_dssp             HHHHHHHHHCSSCEEEEEECSHHHHHHHHH---TTCSEEEEC--CTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEE
T ss_pred             HHHHHHhccCCceEEeeccchhHHHHHHHh---cCCcceeec--cccccccccccccccchhhhhhhhhhhccCCceeEE
Confidence            567788776554444433344443333333   688988763  444333223333   3333433322   24679999


Q ss_pred             EEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554          107 VDGGLG-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       107 vdGGI~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      +||||+ .-++...+..|||.+-+|+.+.
T Consensus       311 adGGIR~G~DVaKALALGAdaVgigrp~L  339 (414)
T d1kbia1         311 VDGGVRRGTDVLKALCLGAKGVGLGRPFL  339 (414)
T ss_dssp             EESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred             ecCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            999999 5888888899999999998654

>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.44  E-value=0.065  Score=39.42  Aligned_cols=124  Identities=15%  Similarity=0.246  Sum_probs=76.1

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhc-CCCCC---
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEG-ANPVE---   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~-~~~~d---   69 (157)
                      .+++.++|++++.+.        .|. ++.+..-++.+.++|+.+-+-+.-+.       ..+.+...+.. ...++   
T Consensus        78 a~mLkd~G~~~viiGHSERR~~~~Et-d~~i~~K~~~al~~~l~pI~CiGE~~~~~~~~~~~~~~~~Ql~~~l~~~~~~~  156 (246)
T d1o5xa_          78 AEIAKDLNIEYVIIGHFERRKYFHET-DEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFD  156 (246)
T ss_dssp             HHHHHHTTCCEEEECCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHTTGGGCCCTT
T ss_pred             HHHHhhcccceeeeccccchhhhccc-hHHHHHHHHHHHHcccceEEEEecccccccchhhHHHHHHHHHhhhhhhcccc
Confidence            367899999999997        344 33447777888889999988775211       11222222220 02222   


Q ss_pred             eEEEEeeeC----CCCCcccchhH----HHHHHHHHh-hC-----CCCcEEEEcCCCHhhHHHHHH-cCCCEEEEccccc
Q 031554           70 MVLVMTVEP----GFGGQKFMPEM----MDKVRSLRN-RY-----PSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVF  134 (157)
Q Consensus        70 ~vl~m~v~p----G~~gq~~~~~~----~~ki~~l~~-~~-----~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~  134 (157)
                      -+ +..=+|    |+ |+.-.++.    ...|++.-+ ++     .+++|.-.|+++++|+.++.. .++|++-+|+|-.
T Consensus       157 ~i-iIAYEPvWAIGT-G~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~idG~LVG~ASL  234 (246)
T d1o5xa_         157 NV-ILVYEPLWAIGT-GKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASL  234 (246)
T ss_dssp             SE-EEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCCTTTHHHHHTSTTCCEEEECGGGG
T ss_pred             cE-EEEecccccccC-CCCcccchhhhhhhHHHHHHHHHhhHhhcCcccEEEeCCCCHhHHHHHhcCCCCCEEEeecccC
Confidence            12 223366    54 44444332    233333322 22     258999999999999998765 8999999999866


Q ss_pred             C
Q 031554          135 G  135 (157)
Q Consensus       135 ~  135 (157)
                      .
T Consensus       235 ~  235 (246)
T d1o5xa_         235 K  235 (246)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.44  E-value=0.016  Score=37.91  Aligned_cols=103  Identities=15%  Similarity=0.210  Sum_probs=69.9

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-  112 (157)
                      +-+.+++.|.++-.+-   +..+.++.+.+  ..+|.|++--..|+..|       ++-++++++..++.+|.+--|-. 
T Consensus        19 l~~~L~~~g~~v~~a~---~~~~a~~~l~~--~~~dlii~D~~mp~~~G-------~el~~~l~~~~~~~piI~~t~~~~   86 (123)
T d1krwa_          19 LERALAGAGLTCTTFE---NGNEVLAALAS--KTPDVLLSDIRMPGMDG-------LALLKQIKQRHPMLPVIIMTAHSD   86 (123)
T ss_dssp             HHHHHHHTTCEEEEES---SSHHHHHHHTT--CCCSEEEECCSSSSSTT-------HHHHHHHHHHSSSCCEEESCCCSC
T ss_pred             HHHHHHHCCCEEEEeC---CHHHHHHHHHh--CCCCEEEehhhcCCchH-------HHHHHHHHHhCCCCeEEEEecCCC
Confidence            3344666788765443   44454444432  57899888666687665       44566677777888876666655 


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      .+...+..++||+.+     +.+.-++.+....+++.++..
T Consensus        87 ~~~~~~a~~~Ga~dy-----l~KP~~~~eL~~~i~~~l~~~  122 (123)
T d1krwa_          87 LDAAVSAYQQGAFDY-----LPKPFDIDEAVALVERAISHY  122 (123)
T ss_dssp             HHHHHHHHHHTEEEE-----CSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCeE-----EeCcCCHHHHHHHHHHHHHcc
Confidence            678888999998865     666557788888888887754

>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Vibrio marinus [TaxId: 90736]

Probab=96.35  E-value=0.032  Score=41.41  Aligned_cols=122  Identities=16%  Similarity=0.252  Sum_probs=74.3

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HH----hhHhc--C
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VY----PLVEG--A   65 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~----~~~~~--~   65 (157)
                      ..++.+.|++++.+.        .|.. +.+.+-++.+.++|+.+.+-+.  .+.+.         +.    ..+..  .
T Consensus        81 a~mlkd~g~~yviiGHSERR~~~~Etd-~~i~~Kv~~al~~gl~pIlCVG--E~~~~r~~~~~~~vv~~Ql~~~~~~~~~  157 (255)
T d1aw1a_          81 PAMLKEFGATHIIIGHSERREYHAESD-EFVAKKFAFLKENGLTPVLCIG--ESDAQNEAGETMAVCARQLDAVINTQGV  157 (255)
T ss_dssp             HHHHGGGTCCEEEESCHHHHHHSCCCH-HHHHHHHHHHHHHTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHhhhcceeeecchhccccccccH-HHHHHHHHHHHHhccceEEEec--cchhhhhcccceeeeehhhhhhhcchhh
Confidence            468899999999996        3443 3336667888889999988885  22221         11    11110  0


Q ss_pred             CCCCeEEEEeeeC----CCCCcccchhHH----HHHHHHHhhC-----CCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcc
Q 031554           66 NPVEMVLVMTVEP----GFGGQKFMPEMM----DKVRSLRNRY-----PSLDIEVDGGLGPSTIAEAAS-AGANCIVAGS  131 (157)
Q Consensus        66 ~~~d~vl~m~v~p----G~~gq~~~~~~~----~ki~~l~~~~-----~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GS  131 (157)
                      ...+-++ ..=+|    |+ |+.-.++..    ..|+.+....     .+++|.-.|.++++|+.++.. -++|++-+|+
T Consensus       158 ~~~~~ii-IAYEPvWAIGt-g~~a~~~~i~~~~~~i~~~~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVG~  235 (255)
T d1aw1a_         158 EALEGAI-IAYEPIWAIGT-GKAATAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGG  235 (255)
T ss_dssp             GGGTTCE-EEECCGGGTTT-SCCCCHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESG
T ss_pred             hhcccce-EEecchhcccC-CcccchhhhhHHHHHHHHhhhcccccccccceEEEcCCCCHhHHHHHhcCCCCCeEEech
Confidence            1111111 23466    53 333333333    3344333221     247899999999999999765 7999999999


Q ss_pred             cccC
Q 031554          132 SVFG  135 (157)
Q Consensus       132 ai~~  135 (157)
                      |-..
T Consensus       236 ASl~  239 (255)
T d1aw1a_         236 AALD  239 (255)
T ss_dssp             GGGS
T ss_pred             HhcC
Confidence            8775

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.30  E-value=0.084  Score=36.62  Aligned_cols=107  Identities=17%  Similarity=0.107  Sum_probs=67.0

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhH-HhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEc
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEV-YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~-~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdG  109 (157)
                      .-+-..++.+|..+ +.+.+.+|.+.+ +...+  .++|.|.+-+.. |.    ..+..-+-++++++.. ++++|.+.|
T Consensus        55 ~~va~~l~~~G~eV-i~lg~~~~~e~iv~aa~~--~~advI~iSs~~-~~----~~~~~~~l~~~L~~~g~~~v~VivGG  126 (168)
T d7reqa2          55 KVIATAYADLGFDV-DVGPLFQTPEETARQAVE--ADVHVVGVSSLA-GG----HLTLVPALRKELDKLGRPDILITVGG  126 (168)
T ss_dssp             HHHHHHHHHTTCEE-EECCTTBCHHHHHHHHHH--HTCSEEEEEECS-SC----HHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred             HHHHHHHHhCCcce-ecCCCcCcHHHHHHHHHc--cCCCEEEEecCc-cc----chHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            33455678889876 455666677654 44444  689999874333 21    1233344456666663 578888777


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHHH
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAP-EPAHVISLMRKSVED  152 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~~l~~~~~~  152 (157)
                      -|-.+....+.++|+|.      +|... .+.+.+..+.+.++.
T Consensus       127 ~ip~~d~~~l~~~Gv~~------iF~pgt~~~e~a~~~~~~~~~  164 (168)
T d7reqa2         127 VIPEQDFDELRKDGAVE------IYTPGTVIPESAISLVKKLRA  164 (168)
T ss_dssp             SCCGGGHHHHHHHTEEE------EECTTCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCCE------EECcCCCHHHHHHHHHHHHHH
Confidence            78899999999999875      35432 344555555554443

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=96.29  E-value=0.018  Score=44.82  Aligned_cols=113  Identities=18%  Similarity=0.225  Sum_probs=74.3

Q ss_pred             HHHHHHhCCCCEEEEccc-CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554            8 YVEPLGKAGASGFTFHVE-ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM   86 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e-~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~   86 (157)
                      ....+.+.|.=. .+|-. ..++. .......+.....++..+......+.++.+.+  ..+|++.+-..+ |.     .
T Consensus        66 mA~~la~~Gglg-vihR~~~ie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--ag~d~i~IDvAh-G~-----~  135 (362)
T d1pvna1          66 MAIALAREGGIS-FIFGSQSIESQ-AAMVHAVKNFRYLVGAGINTRDFRERVPALVE--AGADVLCIDSSD-GF-----S  135 (362)
T ss_dssp             HHHHHHHTTCEE-EECCSSCHHHH-HHHHHHHHTCCCCCEEEECSSSHHHHHHHHHH--HTCSEEEECCSC-CC-----B
T ss_pred             HHHHHHHCCCEE-EEeecCCHHHH-HHHhhhhhhcccccccccchhhhHHHHHHHhh--cCceEEeechhc-cc-----h
Confidence            444567777533 34533 22222 44555566666666777776666677777765  478998875444 42     3


Q ss_pred             hhHHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           87 PEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        87 ~~~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      ....+.++.+++.. +..+|.+.-=.|.+.++.|.++|||++-+|
T Consensus       136 ~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVG  180 (362)
T d1pvna1         136 EWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIG  180 (362)
T ss_dssp             HHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             hHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEec
Confidence            34566777776654 557776666667999999999999999999

>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Entamoeba histolytica [TaxId: 5759]

Probab=96.28  E-value=0.0069  Score=45.29  Aligned_cols=121  Identities=18%  Similarity=0.261  Sum_probs=76.3

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCH---------HhHH----hhHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSV---------EEVY----PLVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~---------~~~~----~~~~~~~~   67 (157)
                      ..++.+.|++++.+.        .|. ++.+.+-++.+-++|+.+.+-+.  .+.         +.+.    ..+.....
T Consensus        86 a~mLkd~G~~yviiGHSERR~~f~Et-d~~i~~K~~~al~~gl~pIlCIG--E~~~~re~~~~~~~~~~Ql~~~~~~~~~  162 (260)
T d1m6ja_          86 VGMLVDCQVPYVILGHSERRQIFHES-NEQVAEKVKVAIDAGLKVIACIG--ETEAQRIANQTEEVVAAQLKAINNAISK  162 (260)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHHTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHhhCcceeeecchhhhhhhccc-HHHHHHHHHHHHhcCCcEEEEec--cchhhhhcCchHHHHHHHHHhhhcccch
Confidence            467899999999996        354 33447777888888999988884  222         1122    22211011


Q ss_pred             ---CCeEEEEeeeC----CCCCcccchhH----HHHHHHHH-hhC-----CCCcEEEEcCCCHhhHHHHHH-cCCCEEEE
Q 031554           68 ---VEMVLVMTVEP----GFGGQKFMPEM----MDKVRSLR-NRY-----PSLDIEVDGGLGPSTIAEAAS-AGANCIVA  129 (157)
Q Consensus        68 ---~d~vl~m~v~p----G~~gq~~~~~~----~~ki~~l~-~~~-----~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~  129 (157)
                         -..|+  .=+|    |+ |+.-.++.    ...|++.- +..     .+++|.-.|.+|++|+.++.. -++|++-+
T Consensus       163 ~~~~~iiI--AYEPvWAIGT-G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~v~ilYGGSV~~~N~~~i~~~~~vDG~LV  239 (260)
T d1m6ja_         163 EAWKNIIL--AYEPVWAIGT-GKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLV  239 (260)
T ss_dssp             GGGGGEEE--EECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCCTTTHHHHHTSTTCCEEEE
T ss_pred             hhhhccEE--eccceecccC-CcccChHHHHHHHHHHHHHHHhhcchhhcCCCcEEEcCCCCHhHHHHHhCCCCCCeEEe
Confidence               12333  3366    54 45444443    33344322 222     248899999999999998764 79999999


Q ss_pred             cccccC
Q 031554          130 GSSVFG  135 (157)
Q Consensus       130 GSai~~  135 (157)
                      |+|-..
T Consensus       240 GgASL~  245 (260)
T d1m6ja_         240 GGASLD  245 (260)
T ss_dssp             SGGGGS
T ss_pred             chHhcC
Confidence            998774

>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.27  E-value=0.023  Score=42.00  Aligned_cols=124  Identities=18%  Similarity=0.213  Sum_probs=75.6

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHh----HHhhHhcCCCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEE----VYPLVEGANPVE   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~----~~~~~~~~~~~d   69 (157)
                      ..++.+.|++++.+.        .|+ ++.+..-++.+.++|+.+.+-+.-+.       ..+.    ++..++.....+
T Consensus        78 a~mL~d~G~~~viiGHSERR~~f~Et-d~~i~~K~~~al~~gl~pIlCVGEt~~er~~g~t~~~l~~Ql~~~l~~~~~~~  156 (246)
T d1r2ra_          78 PGMIKDCGATWVVLGHSERRHVFGES-DELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWS  156 (246)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCSCGG
T ss_pred             HHHHHHHhhhhhhhcchhhhhhcCCC-HHHHHHHHHHhhccCceEEEEecCccccccccchhhhHHHHHHHHhhcccccc
Confidence            468899999999997        343 33347777788889999888775211       1122    222331101212


Q ss_pred             eEEEEeeeC----CCCCcccchh----HHHHHHHHH-hhC-----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEEccccc
Q 031554           70 MVLVMTVEP----GFGGQKFMPE----MMDKVRSLR-NRY-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVF  134 (157)
Q Consensus        70 ~vl~m~v~p----G~~gq~~~~~----~~~ki~~l~-~~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~GSai~  134 (157)
                      -+ +..=+|    |+ |..-.++    +...|++.- +.+     .+++|.-.|.+|++|+.++. .-++|++-+|+|=.
T Consensus       157 ~i-iiAYEPvWAIGT-G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVGgASL  234 (246)
T d1r2ra_         157 KV-VLAYEPVWAIGT-GKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASL  234 (246)
T ss_dssp             GE-EEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTTCCEEEESGGGG
T ss_pred             eE-EEecCceeeccC-CCCccchhhhhhHHHHHHHHHHhhhHhhcCcccEEecCCCCHHHHHHHhcCCCCCeEEeehhhC
Confidence            12 223366    54 4443433    233333332 222     24789999999999999875 57899999999876


Q ss_pred             C
Q 031554          135 G  135 (157)
Q Consensus       135 ~  135 (157)
                      .
T Consensus       235 ~  235 (246)
T d1r2ra_         235 K  235 (246)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0037  Score=48.06  Aligned_cols=56  Identities=25%  Similarity=0.304  Sum_probs=46.5

Q ss_pred             CcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccc-cCCC
Q 031554           82 GQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV-FGAP  137 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai-~~~~  137 (157)
                      |....+..++.++++++.. ++++|..-|||. .+++.++..+||+.+=+||++ |+.+
T Consensus       268 G~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~~Gp  326 (336)
T d1f76a_         268 GRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGP  326 (336)
T ss_dssp             EGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCH
T ss_pred             cchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHhcCh
Confidence            5555667788899988864 579999999998 799999999999999999995 5533

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.19  E-value=0.0068  Score=46.55  Aligned_cols=97  Identities=12%  Similarity=0.110  Sum_probs=61.8

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL  111 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI  111 (157)
                      .+.++.+++.+..+.+.-...+.........   .+.|.+.+-  ++|...-...+...+-+.+++.. .+.+|.+||||
T Consensus       211 ~~~i~~l~~~~~~~i~~kgv~~~~~~~~a~~---~g~~~~~~s--~~gg~~~~~~~~~~~~l~~i~~~-~~~~viasGGI  284 (353)
T d1p4ca_         211 WEALRWLRDLWPHKLLVKGLLSAEDADRCIA---EGADGVILS--NHGGRQLDCAISPMEVLAQSVAK-TGKPVLIDSGF  284 (353)
T ss_dssp             HHHHHHHHHHCCSEEEEEEECCHHHHHHHHH---TTCSEEEEC--CGGGTSCTTCCCGGGTHHHHHHH-HCSCEEECSSC
T ss_pred             HHHHHHHHhccccchhhhcchhhhhHHHHHh---cCCchhhhc--ccccccccccccchhcccchhcc-cccceeecCCc
Confidence            5678889988766655544444444344444   678887662  33322222233333333333333 35789999999


Q ss_pred             C-HhhHHHHHHcCCCEEEEccccc
Q 031554          112 G-PSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus       112 ~-~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      + .-++.+.+..|||.+=+|+.+.
T Consensus       285 R~G~Dv~KALaLGAd~vgigrp~L  308 (353)
T d1p4ca_         285 RRGSDIVKALALGAEAVLLGRATL  308 (353)
T ss_dssp             CSHHHHHHHHHTTCSCEEESHHHH
T ss_pred             CchHHHHHHHHcCCCEEEEcHHHH
Confidence            9 6888888899999999998644

>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Leishmania mexicana [TaxId: 5665]

Probab=96.19  E-value=0.067  Score=39.40  Aligned_cols=123  Identities=15%  Similarity=0.181  Sum_probs=77.0

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHh----HHhhHhcCCCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEE----VYPLVEGANPVE   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~----~~~~~~~~~~~d   69 (157)
                      ..++.++|++++.+.        .|. ++.+..-++.+.++|+.+.+-+.-+.       ..+.    +...+   ..+.
T Consensus        79 a~mL~d~g~~yviiGHSERR~~~~Et-d~~v~~K~~~al~~~l~pI~CiGE~~~~~~~~~~~~~l~~ql~~~l---~~~~  154 (249)
T d1n55a_          79 MPILKDIGVHWVILGHSERRTYYGET-DEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIA---AKLT  154 (249)
T ss_dssp             HHHHHHHTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHH---TTCC
T ss_pred             HHHHHHhccceeeeccchhhhhhccc-HHHHHHHHHHHHHcCCceEEEecccccccccccceeeehhhhhhhh---cccc
Confidence            467899999999996        454 33447778888899999988885211       1111    22233   2222


Q ss_pred             e----EEEEeeeC----CCCCcccchh----HHHHHHHHHh-hC-----CCCcEEEEcCCCHhhHHHHHH-cCCCEEEEc
Q 031554           70 M----VLVMTVEP----GFGGQKFMPE----MMDKVRSLRN-RY-----PSLDIEVDGGLGPSTIAEAAS-AGANCIVAG  130 (157)
Q Consensus        70 ~----vl~m~v~p----G~~gq~~~~~----~~~ki~~l~~-~~-----~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~G  130 (157)
                      .    =++..=+|    |+ |+.-.++    +...|++.-+ .+     .+++|.-.|+++++|+.++.. -++|++-+|
T Consensus       155 ~~~~~~iiIAYEPvWAIGt-G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vdG~LVG  233 (249)
T d1n55a_         155 KDAWNQVVLAYEPVWAIGT-GKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVG  233 (249)
T ss_dssp             GGGGGGEEEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCCTTTHHHHHTSTTCCEEEES
T ss_pred             cccccceEEEecceecccC-CcccChHHHHHHHHHHHHHHHhhcchhhcCcccEEEcCCCCHhHHHHHhcCCCCCeEEee
Confidence            1    01223356    54 4444443    3334444432 22     248999999999999988754 899999999


Q ss_pred             ccccCC
Q 031554          131 SSVFGA  136 (157)
Q Consensus       131 Sai~~~  136 (157)
                      +|-..+
T Consensus       234 ~ASl~~  239 (249)
T d1n55a_         234 GASLKP  239 (249)
T ss_dssp             GGGGST
T ss_pred             hhhcCH
Confidence            987753

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.17  E-value=0.0093  Score=47.21  Aligned_cols=73  Identities=16%  Similarity=0.151  Sum_probs=56.5

Q ss_pred             CCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccc-cCCCCH-HHHHHHHHHHHHH
Q 031554           80 FGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV-FGAPEP-AHVISLMRKSVED  152 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai-~~~~d~-~~~~~~l~~~~~~  152 (157)
                      .+|....+-.++.++++++.. ++++|..-|||. .+++-+...+|||.|=+||++ ++.+.. .+-.+.|.+.+++
T Consensus       319 lSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~  395 (409)
T d1tv5a1         319 VSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQ  395 (409)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCHHhhhhHHHhcChHHHHHHHHHHHHHHHH
Confidence            345555667888899998875 568999999997 799999999999999999985 554554 4444667766654

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.071  Score=34.33  Aligned_cols=101  Identities=23%  Similarity=0.172  Sum_probs=66.5

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~  112 (157)
                      .-+.++..|..+-.+-   +.-+.+..+. . ..+|.|++--..|+.+|       ++-++++++..++.++. +-+--+
T Consensus        16 l~~~L~~~G~~v~~a~---~g~eal~~l~-~-~~~dliilD~~mP~~~G-------~e~~~~i~~~~~~~pvi~lt~~~~   83 (119)
T d2pl1a1          16 LKVQIQDAGHQVDDAE---DAKEADYYLN-E-HIPDIAIVDLGLPDEDG-------LSLIRRWRSNDVSLPILVLTARES   83 (119)
T ss_dssp             HHHHHHHTTCEEEEES---SHHHHHHHHH-H-SCCSEEEECSCCSSSCH-------HHHHHHHHHTTCCSCEEEEESCCC
T ss_pred             HHHHHHHCCCEEEEEC---CHHHHHHHHH-h-cccceeehhccCCCchh-------HHHHHHHHhcCcccceEeeeccCC
Confidence            3344666787755443   3333333333 2 56888887666687555       55677777776676654 455555


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      .++..+..++||+.+     +.+.=++.+....+++.++
T Consensus        84 ~~~~~~a~~~Ga~~y-----l~KP~~~~~L~~~v~~~lr  117 (119)
T d2pl1a1          84 WQDKVEVLSAGADDY-----VTKPFHIEEVMARMQALMR  117 (119)
T ss_dssp             HHHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHHc
Confidence            788889999999987     5555578888888887764

>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.15  E-value=0.068  Score=39.37  Aligned_cols=124  Identities=15%  Similarity=0.184  Sum_probs=75.2

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCC-------HHhHH----hhHhcCCCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTS-------VEEVY----PLVEGANPVE   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~-------~~~~~----~~~~~~~~~d   69 (157)
                      .+++.++|++++.+.        .|. ++.+..-++.+.++|+.+.+-+.-+..       .+.+.    ..+......+
T Consensus        79 ~~mLkd~G~~yvIiGHSERR~~~~Et-~~~i~~K~~~~~~~~l~pI~CiGE~~~~~~~~~~~~~l~~Ql~~~~~~~~~~~  157 (249)
T d1kv5a_          79 LPILKDFGVNWIVLGHSERRAYYGET-NEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKAD  157 (249)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCCGGG
T ss_pred             HHHHHhhccchhhhcchhhhhhhccc-HHHHHHHHHHHHhcCCceEEEeccccccccccchHHHHHHHHHhhhccccccc
Confidence            468899999999997        343 333366777788889998888852211       11122    2221001111


Q ss_pred             --eEEEEeeeC----CCCCcccchhHHH----HHHHH-HhhC-----CCCcEEEEcCCCHhhHHHHHHc-CCCEEEEccc
Q 031554           70 --MVLVMTVEP----GFGGQKFMPEMMD----KVRSL-RNRY-----PSLDIEVDGGLGPSTIAEAASA-GANCIVAGSS  132 (157)
Q Consensus        70 --~vl~m~v~p----G~~gq~~~~~~~~----ki~~l-~~~~-----~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSa  132 (157)
                        -+ +..=+|    |+ |+.-.++...    .|++. ++.+     .+++|.-.|.++++|+.++... ++|++-+|+|
T Consensus       158 ~~~i-iIAYEPvWAIGt-G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~~~ilYGGSV~~~N~~~i~~~~~vDG~LVGgA  235 (249)
T d1kv5a_         158 WAKV-VIAYEPVWAIGT-GKVATPQQAQEAHALISSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGA  235 (249)
T ss_dssp             GGGE-EEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCCTTTHHHHHTSTTCCEEEESGG
T ss_pred             ccce-EEecCceecccc-cccccchhhhhhhHHHHHHHHHhcChhhcCCCcEEEcCCCCHhHHHHHhcCCCCCEEEechH
Confidence              11 223366    54 4444443332    34442 2222     2489999999999999998654 8999999998


Q ss_pred             ccC
Q 031554          133 VFG  135 (157)
Q Consensus       133 i~~  135 (157)
                      =.+
T Consensus       236 Sl~  238 (249)
T d1kv5a_         236 SLK  238 (249)
T ss_dssp             GGS
T ss_pred             hcC
Confidence            776

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.057  Score=34.90  Aligned_cols=77  Identities=14%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~  144 (157)
                      ..+|.|++--.-||.+|       ++-++++|+..+..+|. +-+--+.+...+..++||+-+     +.+.-++.+...
T Consensus        42 ~~~dlillD~~mP~~~G-------~~~~~~lr~~~~~~~ii~it~~~~~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~  109 (120)
T d1p2fa2          42 EAFHVVVLDVMLPDYSG-------YEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDY-----VTKPFNPEILLA  109 (120)
T ss_dssp             SCCSEEEEESBCSSSBH-------HHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEE-----EESSCCHHHHHH
T ss_pred             CCCCEEEEeCcccccch-------hHHHHHHhhcCCCCcEEEEecCCCHHHHHHHHHCCCCEE-----EECCCCHHHHHH
Confidence            56898887666788665       45566677776777655 445555788889999999976     566668888889


Q ss_pred             HHHHHHHHHh
Q 031554          145 LMRKSVEDAQ  154 (157)
Q Consensus       145 ~l~~~~~~~~  154 (157)
                      .+++.++..+
T Consensus       110 ~i~~~l~r~r  119 (120)
T d1p2fa2         110 RVKRFLEREK  119 (120)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHcc
Confidence            9988887554

>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.03  E-value=0.048  Score=40.46  Aligned_cols=124  Identities=15%  Similarity=0.171  Sum_probs=75.5

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhH----HhhHhcCCCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEV----YPLVEGANPVE   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~----~~~~~~~~~~d   69 (157)
                      ..++.++|++++.+.        .|. ++.+.+-++.+.++|+.+.+-+.-+.       ..+.+    ...++.....+
T Consensus        87 a~mL~d~G~~yviiGHSERR~~~~Et-d~~i~~K~~~al~~~l~pIlCvGE~~~~~~~~~~~~~~~~Ql~~~~~~~~~~~  165 (257)
T d1mo0a_          87 PAMIKDLGLEWVILGHSERRHVFGES-DALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWE  165 (257)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTTCCST
T ss_pred             HHHHHHhCcceeeecchhhhhhhcch-HHHHHHHHHHHhhccceEEEeeccccccccccchhheehhhhhcccccccccc
Confidence            468899999999997        343 23346777778889999988884211       11112    22221001112


Q ss_pred             eEEEEeeeC----CCCCcccchh----HHHHHHHHHh-hC-----CCCcEEEEcCCCHhhHHHHHH-cCCCEEEEccccc
Q 031554           70 MVLVMTVEP----GFGGQKFMPE----MMDKVRSLRN-RY-----PSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVF  134 (157)
Q Consensus        70 ~vl~m~v~p----G~~gq~~~~~----~~~ki~~l~~-~~-----~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~  134 (157)
                      -+ +..=+|    |+ |+.-.++    +...|++.-+ ..     .+++|.-.|.++++|+.++.. -++|++-+|+|=.
T Consensus       166 ~i-iIAYEPvWAIGt-G~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~~~iLYGGSV~~~N~~~i~~~~~vDG~LVGgASL  243 (257)
T d1mo0a_         166 NI-VIAYEPVWAIGT-GKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASL  243 (257)
T ss_dssp             TE-EEEECCGGGTTT-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCCTTTHHHHTTSTTCCEEEESGGGG
T ss_pred             ce-EEEecchhhccc-ccccchhhhhhHHHHHHHHHHHhhCHhhcCcccEEeeCCcCHHHHHHHhcCCCCCeEEeehHhC
Confidence            12 223466    53 4444443    3333443322 22     147899999999999998865 6999999999866


Q ss_pred             C
Q 031554          135 G  135 (157)
Q Consensus       135 ~  135 (157)
                      .
T Consensus       244 ~  244 (257)
T d1mo0a_         244 K  244 (257)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.02  E-value=0.043  Score=40.61  Aligned_cols=123  Identities=20%  Similarity=0.236  Sum_probs=76.2

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhc-CCCCC---
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEG-ANPVE---   69 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~-~~~~d---   69 (157)
                      .+++.+.|++++.+.        .|. ++.+.+-++.+.++|+.+.+-+.-+.       ..+.+...++. +..++   
T Consensus        80 a~mL~d~G~~~viiGHSERR~~~~Et-d~~i~~K~~~al~~gl~pIlCIGE~~~~r~~g~t~~~l~~Ql~~~l~~~~~~~  158 (252)
T d1b9ba_          80 PLMLQEIGVEYVIVGHSERRRIFKED-DEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEE  158 (252)
T ss_dssp             HHHHHTTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEECCCHHHHHHTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHhhcchheecchhhhhhhccc-CHHHHHHHHHHHHCCCeEEEEecccchhhhccchHHHHHHHHHhhhcccchhc
Confidence            467899999999997        343 33447778888899999988885211       11222333210 03333   


Q ss_pred             ---eEEEEeeeC----CCCCcccchh----HHHHHHHH-HhhC-----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEEcc
Q 031554           70 ---MVLVMTVEP----GFGGQKFMPE----MMDKVRSL-RNRY-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVAGS  131 (157)
Q Consensus        70 ---~vl~m~v~p----G~~gq~~~~~----~~~ki~~l-~~~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~GS  131 (157)
                         .|+  .=+|    |+ |+.-.++    +...|++. ++++     .+++|.-.|+++++|+.++. .-++|++-+|+
T Consensus       159 ~~~iiI--AYEPvWAIGt-G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVGg  235 (252)
T d1b9ba_         159 AKRVVI--AYEPVWAIGT-GRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGG  235 (252)
T ss_dssp             HTTCEE--EECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEESSCCHHHHTTTSSSTTCCEEEESG
T ss_pred             ccceEE--Eecccccccc-ccCCChHHHHHHHHHHHHHHHHhccccccCcccEEEcCCCCHHHHHHHhcCCCCCEEEeec
Confidence               232  2356    54 4443443    23334433 2232     24789999999999999875 45899999999


Q ss_pred             cccC
Q 031554          132 SVFG  135 (157)
Q Consensus       132 ai~~  135 (157)
                      |=..
T Consensus       236 ASL~  239 (252)
T d1b9ba_         236 ASLK  239 (252)
T ss_dssp             GGTS
T ss_pred             hhCC
Confidence            8765

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=95.96  E-value=0.045  Score=41.40  Aligned_cols=127  Identities=16%  Similarity=0.202  Sum_probs=78.1

Q ss_pred             cChHHHHHHH--HhCCCCEEEEcccCCc----------------chHHHHHHHHHHc-CCceEEEec----CCCCHHhHH
Q 031554            3 TNPLDYVEPL--GKAGASGFTFHVEISK----------------DNWQELVQRIKSK-GMRPGVALK----PGTSVEEVY   59 (157)
Q Consensus         3 ~~p~~~i~~~--~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~-g~~~gl~l~----~~t~~~~~~   59 (157)
                      .+|+.+.+.+  .+.|+|.|-+-.-.+.                +.+.++++++++. ++.+.+=+.    .....+.+.
T Consensus        64 ~~p~~~~~aa~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~  143 (305)
T d1vhna_          64 SEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYR  143 (305)
T ss_dssp             SCHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHH
T ss_pred             cchhhhhhhhhhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHH
Confidence            4676665433  5569999887643331                1236777777753 444433222    122223344


Q ss_pred             hhHhcCCCCCeEEEEeeeCCCCCcccch-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH-cCCCEEEEcccccCC
Q 031554           60 PLVEGANPVEMVLVMTVEPGFGGQKFMP-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS-AGANCIVAGSSVFGA  136 (157)
Q Consensus        60 ~~~~~~~~~d~vl~m~v~pG~~gq~~~~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~-~Gad~vV~GSai~~~  136 (157)
                      .+.+  .+++.+.+   |+-+..|.+.. ..++.|++++   .++++.+=|||+ .+++..+.+ .|+|+|-+|++.++.
T Consensus       144 ~l~~--~G~~~itv---H~Rt~~q~~~~~a~~~~i~~~~---~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~n  215 (305)
T d1vhna_         144 ILVE--EGVDEVFI---HTRTVVQSFTGRAEWKALSVLE---KRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGR  215 (305)
T ss_dssp             HHHH--TTCCEEEE---ESSCTTTTTSSCCCGGGGGGSC---CSSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTC
T ss_pred             HHHH--hCCcEEEe---chhhhhhccccchhhhHHHhhh---hhhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHh
Confidence            4433  68888865   45444555432 2344454444   468999999997 788888754 799999999998765


Q ss_pred             C
Q 031554          137 P  137 (157)
Q Consensus       137 ~  137 (157)
                      |
T Consensus       216 P  216 (305)
T d1vhna_         216 P  216 (305)
T ss_dssp             T
T ss_pred             h
Confidence            5

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=95.94  E-value=0.034  Score=47.51  Aligned_cols=117  Identities=17%  Similarity=0.187  Sum_probs=76.5

Q ss_pred             hCCCCEEEEcccCCcc---hHHHHHHHHHHc--CCceEEEecCCCCHHhHHh-hHhcCCCCCeEEEEeeeCCCCCcccc-
Q 031554           14 KAGASGFTFHVEISKD---NWQELVQRIKSK--GMRPGVALKPGTSVEEVYP-LVEGANPVEMVLVMTVEPGFGGQKFM-   86 (157)
Q Consensus        14 ~~gad~v~vh~e~~~~---~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~-~~~~~~~~d~vl~m~v~pG~~gq~~~-   86 (157)
                      .-|.|.++-..-..-+   .+..++..+|+.  +..+|+=|.....+..+.. +.+  ..+|+|.+-+-+-|++..+.. 
T Consensus       565 ~~G~~liSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vak--a~aD~I~IdG~eGGTGAap~~~  642 (809)
T d1ofda2         565 KPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAK--ANADIIQISGHDGGTGASPLSS  642 (809)
T ss_dssp             CTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHH--TTCSEEEEECTTCCCSSEEHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhh--cCCCEEEEeCCCCccccccHHH
Confidence            3477777765322222   226677778875  6788988876666665433 222  578999998777666643321 


Q ss_pred             --------hhHHHHH-HHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554           87 --------PEMMDKV-RSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        87 --------~~~~~ki-~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa  132 (157)
                              ...+.+. +.|.+.  ...+.+.+|||+. ..++-.....|||.+-+|++
T Consensus       643 ~~~~GlP~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~  700 (809)
T d1ofda2         643 IKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSI  700 (809)
T ss_dssp             HHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHH
T ss_pred             HhcCCccHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHH
Confidence                    1122222 233332  2468999999998 78888889999999999975

>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.042  Score=40.56  Aligned_cols=122  Identities=17%  Similarity=0.245  Sum_probs=74.2

Q ss_pred             HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCH---------HhHH----hhHhcCCC
Q 031554            9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSV---------EEVY----PLVEGANP   67 (157)
Q Consensus         9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~---------~~~~----~~~~~~~~   67 (157)
                      ..++.+.|++++.+.        .|. ++.+..-++.+.++|+.+.+-+.  .+.         +.+.    ..++....
T Consensus        79 a~mLkd~G~~yviIGHSERR~~f~Et-d~~i~~K~~~al~~gl~pIlCVG--Etle~r~~~~~~~~~~~Ql~~~l~~~~~  155 (247)
T d1neya_          79 VDQIKDVGAKYVILGHSERRSYFHED-DKFIADKTKFALGQGVGVILCIG--ETLEEKKAGKTLDVVERQLNAVLEEVKD  155 (247)
T ss_dssp             HHHHHHTTCCEEEESCHHHHHTTCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHhhccchhhhcchhhhhhccch-HHHHHHHHHHHhhcCceEEEEec--chhhhhccccchhhhHHHHHhhhccccc
Confidence            468899999999997        343 33336667888889999988885  222         1122    12211011


Q ss_pred             CCeEEEEeeeC----CCCCcccchh----HHHHHHHHH-hhC-----CCCcEEEEcCCCHhhHHHHHH-cCCCEEEEccc
Q 031554           68 VEMVLVMTVEP----GFGGQKFMPE----MMDKVRSLR-NRY-----PSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSS  132 (157)
Q Consensus        68 ~d~vl~m~v~p----G~~gq~~~~~----~~~ki~~l~-~~~-----~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSa  132 (157)
                      .+- ++..=+|    |++ +.-.++    +...|++.- +.+     .+++|.-.|+++++|+.++.. -++|++-+|+|
T Consensus       156 ~~~-iiIAYEPvWAIGtG-~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~iLYGGSV~~~N~~~i~~~~~iDG~LVGgA  233 (247)
T d1neya_         156 FTN-VVVAYEPVWAIGTG-LAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGA  233 (247)
T ss_dssp             CTT-EEEEECCGGGTTTS-CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCCTTTGGGGTTCTTCCEEEESGG
T ss_pred             ccc-eEEEecchhcccCC-cccChhhhhhhhHHHHHHHHHhhhhhhcccCcEEEeCCCCHHHHHHHhcCCCCCeEEeehH
Confidence            221 1223366    544 443433    233343321 111     247899999999999988755 56899999998


Q ss_pred             ccC
Q 031554          133 VFG  135 (157)
Q Consensus       133 i~~  135 (157)
                      -.+
T Consensus       234 SL~  236 (247)
T d1neya_         234 SLK  236 (247)
T ss_dssp             GGS
T ss_pred             hCC
Confidence            664

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=95.91  E-value=0.041  Score=36.62  Aligned_cols=100  Identities=19%  Similarity=0.244  Sum_probs=63.8

Q ss_pred             HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCCHh
Q 031554           36 QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPS  114 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~~~  114 (157)
                      ..+.+.|..+-.+   .+.-+.+..+ +. ..+|.|++--..|+.+|       ++-++++|+..++++|. +.|--+.+
T Consensus        18 ~~L~~~g~~v~~~---~~~~~al~~l-~~-~~~dlil~D~~mP~~~G-------~el~~~lr~~~~~~pvI~lT~~~~~~   85 (140)
T d1qkka_          18 QTLELAGFTVSSF---ASATEALAGL-SA-DFAGIVISDIRMPGMDG-------LALFRKILALDPDLPMILVTGHGDIP   85 (140)
T ss_dssp             HHHHHTTCEEEEE---SCHHHHHHTC-CT-TCCSEEEEESCCSSSCH-------HHHHHHHHHHCTTSCEEEEECGGGHH
T ss_pred             HHHHHCCCEEEEe---CChHHHHHHH-hc-cCcchHHHhhccCCCCH-------HHHHHHHHHhCCCCcEEEEECCCCHH
Confidence            3456678765443   2344444444 33 57898887666687655       45567777777887755 45545578


Q ss_pred             hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       115 ~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .+.+..++||+-++.     +.-++.+....+++.++.
T Consensus        86 ~~~~a~~~Ga~dyl~-----KP~~~~~L~~~i~~~~~~  118 (140)
T d1qkka_          86 MAVQAIQDGAYDFIA-----KPFAADRLVQSARRAEEK  118 (140)
T ss_dssp             HHHHHHHTTCCEEEE-----SSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEeec-----CCCCHHHHHHHHHHHHHH
Confidence            888999999998754     444666666666665543

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=95.83  E-value=0.06  Score=34.94  Aligned_cols=102  Identities=16%  Similarity=0.166  Sum_probs=64.8

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI  111 (157)
                      ..-+.+++.|..+-.+   ++..+.+. +++. ..+|.|++----||.+|       ++-++++|+..++.+ |.+.|--
T Consensus        18 ~l~~~L~~~g~~v~~a---~~~~~al~-~~~~-~~~dlvi~D~~mp~~~G-------~e~~~~lr~~~~~~~iI~lt~~~   85 (123)
T d1dbwa_          18 SLAFMLTMNGFAVKMH---QSAEAFLA-FAPD-VRNGVLVTDLRMPDMSG-------VELLRNLGDLKINIPSIVITGHG   85 (123)
T ss_dssp             HHHHHHHHTTCEEEEE---SCHHHHHH-HGGG-CCSEEEEEECCSTTSCH-------HHHHHHHHHTTCCCCEEEEECTT
T ss_pred             HHHHHHHHCCCEEEEE---CCHHHHHH-HHhh-cCCcEEEEeccCccccc-------hHHHHHHHhcCCCCeEEEEEeeC
Confidence            3444566678775433   23334444 3333 46787776555687555       455666777767766 4556666


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      +.+...+..++||+.+     +.+.-++.+....+++.++
T Consensus        86 ~~~~~~~a~~~Ga~~y-----l~KP~~~~~L~~~i~~a~e  120 (123)
T d1dbwa_          86 DVPMAVEAMKAGAVDF-----IEKPFEDTVIIEAIERASE  120 (123)
T ss_dssp             CHHHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHH
Confidence            6889999999999986     4555577776666666543

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.089  Score=34.55  Aligned_cols=102  Identities=16%  Similarity=0.163  Sum_probs=64.4

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~  112 (157)
                      .-+.++..|..+..+-   +..+.++.+.+  ..+|.|++-...|+.+|       ++-++++|+..+..+|. +-|--.
T Consensus        24 l~~~L~~~g~~v~~a~---~g~ea~~~~~~--~~~dlillD~~mP~~dG-------~el~~~ir~~~~~~pii~lt~~~~   91 (133)
T d2ayxa1          24 LADQLGSLGYQCKTAN---DGVDALNVLSK--NHIDIVLSDVNMPNMDG-------YRLTQRIRQLGLTLPVIGVTANAL   91 (133)
T ss_dssp             HHHHHHHHTSEEEEEC---CSHHHHHHHHH--SCCSEEEEEESSCSSCC-------HHHHHHHHHHHCCSCEEEEESSTT
T ss_pred             HHHHHHHcCCEEEEEC---cHHHHHHHHhc--cCceEEEEeccCCCCCH-------HHHHHHHHHhCCCCCEEEEeccCC
Confidence            3344666788765443   44444444333  57899988777788776       33445555554566654 556666


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      .++..+..++||+.+     +.+.=++.+....++..++.
T Consensus        92 ~~~~~~~~~~G~~~~-----l~KP~~~~~L~~~l~~~~~r  126 (133)
T d2ayxa1          92 AEEKQRCLESGMDSC-----LSKPVTLDVIKQTLTLYAER  126 (133)
T ss_dssp             SHHHHHHHHCCCEEE-----EESSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHHHH
Confidence            788899999999887     44544666665556555543

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.75  E-value=0.096  Score=34.49  Aligned_cols=100  Identities=21%  Similarity=0.266  Sum_probs=64.6

Q ss_pred             HHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCCH
Q 031554           35 VQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLGP  113 (157)
Q Consensus        35 i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~~  113 (157)
                      -..++..|..+-.+   .+.-+.+..+.+  ..+|.|++--..|+..|       ++-++++|+..++.+ |.+.|--+.
T Consensus        17 ~~~L~~~g~~v~~a---~~~~eAl~~l~~--~~~dlvilD~~mp~~~G-------~e~~~~lr~~~~~~piI~lT~~~~~   84 (137)
T d1ny5a1          17 EEYLSMKGIKVESA---ERGKEAYKLLSE--KHFNVVLLDLLLPDVNG-------LEILKWIKERSPETEVIVITGHGTI   84 (137)
T ss_dssp             HHHHHHHTCEEEEE---SSHHHHHHHHHH--SCCSEEEEESBCSSSBH-------HHHHHHHHHHCTTSEEEEEEETTCH
T ss_pred             HHHHHHCCCEEEEE---CCHHHHHHHhhc--cccccchHHHhhhhhhH-------HHHHHHHHHhCCCCCEEEEECCCCH
Confidence            33455568776443   344444444433  57899988766787665       445666667777777 445666668


Q ss_pred             hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      ++..+..++||+-++.     +.-++.+....+++.++
T Consensus        85 ~~~~~a~~~Ga~dyl~-----KP~~~~~L~~~i~~~l~  117 (137)
T d1ny5a1          85 KTAVEAMKMGAYDFLT-----KPCMLEEIELTINKAIE  117 (137)
T ss_dssp             HHHHHHHTTTCCEEEE-----ESCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHH
Confidence            9999999999998855     44456655555555544

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.078  Score=34.11  Aligned_cols=101  Identities=17%  Similarity=0.134  Sum_probs=65.7

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP  113 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~  113 (157)
                      +-+.+++.|.++-.+-+   .-+.++.+.+  ..+|.|++---.|+.+|       ++-++++|+..+..-|.+-+.-+.
T Consensus        16 l~~~L~~~g~~v~~a~~---~~eal~~l~~--~~~dliilD~~mP~~~G-------~e~~~~ir~~~~~piI~lt~~~~~   83 (119)
T d1zh2a1          16 LRTALEGDGMRVFEAET---LQRGLLEAAT--RKPDLIILDLGLPDGDG-------IEFIRDLRQWSAVPVIVLSARSEE   83 (119)
T ss_dssp             HHHHHHTTTCEEEEESS---HHHHHHHHHH--HCCSEEEEESEETTEEH-------HHHHHHHHTTCCCCEEEEESCCSH
T ss_pred             HHHHHHHCCCEEEEeCC---HHHHHHHHHh--cCCCEEEeccccCCCCC-------chHHHHHHhccCCcEEEEeccCCH
Confidence            33445667887665543   3333333332  46899888766787555       445566666533334666677778


Q ss_pred             hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      ++..+..++||+-+     +.+.=++.+....+++.++
T Consensus        84 ~~~~~a~~~Ga~dy-----l~KP~~~~~L~~~i~~~lr  116 (119)
T d1zh2a1          84 SDKIAALDAGADDY-----LSKPFGIGELQARLRVALR  116 (119)
T ss_dssp             HHHHHHHHHTCSEE-----EESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHHh
Confidence            88889999999977     5555588888888887775

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.61  E-value=0.03  Score=36.42  Aligned_cols=103  Identities=15%  Similarity=0.192  Sum_probs=69.2

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGL  111 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI  111 (157)
                      -+-+.+++.|..+-.+-+   ..+.++.+.+  ...|.|++--..|+..|       ++-++++|+..++.+|. +.|--
T Consensus        16 ~l~~~L~~~g~~v~~a~~---~~eal~~~~~--~~~dlvl~D~~mP~~~G-------~el~~~ir~~~~~~piI~lt~~~   83 (121)
T d1ys7a2          16 SLERGLRLSGFEVATAVD---GAEALRSATE--NRPDAIVLDINMPVLDG-------VSVVTALRAMDNDVPVCVLSARS   83 (121)
T ss_dssp             HHHHHHHHTTCEEEEESS---HHHHHHHHHH--SCCSEEEEESSCSSSCH-------HHHHHHHHHTTCCCCEEEEECCC
T ss_pred             HHHHHHHHCCCEEEEECC---HHHHHHHHHh--CCCCEEEEEeeccCccc-------HHHHHHHHhcCCCCEEEEEEeeC
Confidence            344556677887665443   3444443333  57898887666687554       55667777776777754 45555


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      +.++..+..++||+.+     +.+.=++.+.+..+++.++.
T Consensus        84 ~~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~~i~~~l~r  119 (121)
T d1ys7a2          84 SVDDRVAGLEAGADDY-----LVKPFVLAELVARVKALLRR  119 (121)
T ss_dssp             TTTCCCTTTTTTCSEE-----EESSCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHHc
Confidence            6788888889999987     55655888888888887763

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.53  E-value=0.092  Score=33.74  Aligned_cols=101  Identities=12%  Similarity=0.131  Sum_probs=66.9

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~  112 (157)
                      +-..+++.|..+-.+-+   ..+.++.+.+  ..+|.|++--..||..|       ++-++++|+..+..+ |.+-+--+
T Consensus        18 l~~~L~~~g~~v~~a~~---~~~al~~l~~--~~~dlillD~~mp~~~G-------~~~~~~~r~~~~~~~ii~lt~~~~   85 (121)
T d1mvoa_          18 LQYNLERSGYDVITASD---GEEALKKAET--EKPDLIVLDVMLPKLDG-------IEVCKQLRQQKLMFPILMLTAKDE   85 (121)
T ss_dssp             HHHHHHHTTCEEEEESS---HHHHHHHHHH--HCCSEEEEESSCSSSCH-------HHHHHHHHHTTCCCCEEEEECTTC
T ss_pred             HHHHHHHCCCEEEEECC---HHHHHHHHhc--ccccEEEecccccCCCC-------chhhhhhhccCCCCEEEEEEeeCC
Confidence            34556677887655443   3333333332  46899887766787665       345566666665555 44566666


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      .++..+..++||+.+     +.+.=++.+....+++.++
T Consensus        86 ~~~~~~~~~~Ga~~y-----l~KP~~~~~L~~~i~~~lr  119 (121)
T d1mvoa_          86 EFDKVLGLELGADDY-----MTKPFSPREVNARVKAILR  119 (121)
T ss_dssp             CCCHHHHHHTTCCEE-----EESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHc
Confidence            788888899999976     5665588888888887765

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.16  Score=33.25  Aligned_cols=74  Identities=18%  Similarity=0.293  Sum_probs=54.9

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  144 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~  144 (157)
                      ..+|.|++--..||..|       ++-++++|+..++.++ .+-+.-+.+.+.+..++||+.+     +.+.-++.+-.+
T Consensus        47 ~~~DlvllD~~mP~~~G-------~el~~~ir~~~~~~~vivlt~~~~~~~~~~a~~~Ga~~y-----l~Kp~~~~~L~~  114 (138)
T d1a04a2          47 LDPDLILLDLNMPGMNG-------LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGY-----LLKDMEPEDLLK  114 (138)
T ss_dssp             HCCSEEEEETTSTTSCH-------HHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEE-----EETTCCHHHHHH
T ss_pred             cCCCEEEEecCCCCCCH-------HHHHHHHHhhCCCCCEEEEEEECCHHHHHHHHHcCCCEE-----EECCCCHHHHHH
Confidence            46899988666787554       6677888887777764 4556666888999999999987     555567777777


Q ss_pred             HHHHHHH
Q 031554          145 LMRKSVE  151 (157)
Q Consensus       145 ~l~~~~~  151 (157)
                      .+++.++
T Consensus       115 ~i~~v~~  121 (138)
T d1a04a2         115 ALHQAAA  121 (138)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
Confidence            7777665

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.48  E-value=0.12  Score=33.10  Aligned_cols=100  Identities=10%  Similarity=0.155  Sum_probs=65.2

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~  112 (157)
                      +-..+++.|..+-.+-   +..+.++.+.+  ..+|.|++--..||..|       ++-++++++. ++++ |.+-|.-.
T Consensus        16 l~~~L~~~g~~v~~a~---~~~eal~~~~~--~~~dlillD~~mp~~~G-------~~~~~~i~~~-~~~pvI~lt~~~~   82 (117)
T d2a9pa1          16 IKFNMTKEGYEVVTAF---NGREALEQFEA--EQPDIIILDLMLPEIDG-------LEVAKTIRKT-SSVPILMLSAKDS   82 (117)
T ss_dssp             HHHHHHHTTCEEEEES---SHHHHHHHHHH--HCCSEEEECSSCSSSCH-------HHHHHHHHTT-CCCCEEEEESCCS
T ss_pred             HHHHHHHCCCEEEEEC---CHHHHHHHHHh--cCCCEEEeccccCCCCc-------cHHHHHHHhC-CCCCEEEEecCCC
Confidence            3345667788765443   33344443333  46898887655687665       4455666654 4565 45677777


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      .++..+..++||+.+     |.+.=++.+....+++.++
T Consensus        83 ~~~~~~a~~~Ga~d~-----l~KP~~~~~L~~~i~~~lr  116 (117)
T d2a9pa1          83 EFDKVIGLELGADDY-----VTKPFSNRELQARVKALLR  116 (117)
T ss_dssp             HHHHHHHHHHTCSEE-----EESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHhC
Confidence            888888999999977     5555578887777777664

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.42  E-value=0.13  Score=33.15  Aligned_cols=103  Identities=14%  Similarity=0.190  Sum_probs=67.4

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG-I~  112 (157)
                      +-+.+++.|..+-.+-   +.-+.++.+.+  ..+|.|++--..|+..|       ++-++++|+..+..+|.+--| -.
T Consensus        17 l~~~L~~~g~~v~~a~---~~~~al~~l~~--~~~dlillD~~mp~~~g-------~~~~~~lr~~~~~~piI~lt~~~~   84 (122)
T d1kgsa2          17 ITEALKKEMFTVDVCY---DGEEGMYMALN--EPFDVVILDIMLPVHDG-------WEILKSMRESGVNTPVLMLTALSD   84 (122)
T ss_dssp             HHHHHHHTTCEEEEES---SHHHHHHHHHH--SCCSEEEEESCCSSSCH-------HHHHHHHHHTTCCCCEEEEESSCH
T ss_pred             HHHHHHHCCCEEEEEc---chHHHHHHHHh--hCccccccccccccchh-------HHHHHHHHhcCCCCcEEEEcCCCC
Confidence            3344566788755443   33343444433  57898887666687655       445566676666666555444 44


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      .++..+..++||+.+     +.+.=++.+....+++.++..
T Consensus        85 ~~~~~~~~~~Ga~~y-----l~KP~~~~~L~~~i~~~l~r~  120 (122)
T d1kgsa2          85 VEYRVKGLNMGADDY-----LPKPFDLRELIARVRALIRRK  120 (122)
T ss_dssp             HHHHHHTCCCCCSEE-----EESSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcee-----ecCCCCHHHHHHHHHHHHHHh
Confidence            677888899999987     445558888888888887643

>d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein Bll6730
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=95.40  E-value=0.092  Score=38.02  Aligned_cols=118  Identities=8%  Similarity=0.009  Sum_probs=77.4

Q ss_pred             ChHHH---HHHHHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            4 NPLDY---VEPLGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         4 ~p~~~---i~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      +|+.+   ++.+.+.|...+=++.-.  .+.. .+.++++|+. |  +++.+..|-....+...++++.+...+...+  
T Consensus        20 ~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~d-i~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai~~~~~l~~~~i~wi--   96 (247)
T d1tzza1          20 GLSMLRGEMRGYLDRGYNVVKMKIGGAPIEED-RMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWY--   96 (247)
T ss_dssp             CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHH-HHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEE--
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHH-HHHHHHHHHhccCCceEEecccccccchhHHHHHhhcchhhhhhh--
Confidence            46666   455678899999999643  2334 5667777663 4  4455566666677665555542144443322  


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCC-----CEEEEcc
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGA-----NCIVAGS  131 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Ga-----d~vV~GS  131 (157)
                            .|++.+..++-++++++.. +++|++|-.+ +...+..+++.||     |++...-
T Consensus        97 ------EeP~~~~d~~~~~~l~~~~-~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d~  151 (247)
T d1tzza1          97 ------EEVGDPLDYALQAALAEFY-PGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDC  151 (247)
T ss_dssp             ------ECCSCTTCHHHHHHHTTTC-CSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCT
T ss_pred             ------ccccccccchhhhhhhhcc-ccccccchhhhhhHHHHHHHHccCCcCcceeEeecc
Confidence                  4556666677777777763 6899999887 5889999998886     6775543

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=95.39  E-value=0.099  Score=33.62  Aligned_cols=97  Identities=12%  Similarity=0.162  Sum_probs=63.1

Q ss_pred             HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCCHh
Q 031554           36 QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPS  114 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~~~  114 (157)
                      +.+.+.|.++-.+-   +..+.++.+.+  ..+|.|++--..||.+|       ++-++++|+..++.+|.+ -|--+.+
T Consensus        19 ~~L~~~g~~v~~a~---~g~eal~~~~~--~~~dlillD~~mP~~~G-------~el~~~lr~~~~~~pvi~lt~~~~~~   86 (119)
T d1peya_          19 EVFNKEGYQTFQAA---NGLQALDIVTK--ERPDLVLLDMKIPGMDG-------IEILKRMKVIDENIRVIIMTAYGELD   86 (119)
T ss_dssp             HHHHHTTCEEEEES---SHHHHHHHHHH--HCCSEEEEESCCTTCCH-------HHHHHHHHHHCTTCEEEEEESSCCHH
T ss_pred             HHHHHcCCEEEEeC---CHHHHHHHHHh--CCCCEEEEeccCCCCCH-------HHHHHHHHHhCCCCcEEEEecCCCHH
Confidence            34555788765443   34444443332  46898887666788665       455666777777777554 5555678


Q ss_pred             hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554          115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  149 (157)
Q Consensus       115 ~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~  149 (157)
                      ...+..++||+.+     +.+.=++.+....+++.
T Consensus        87 ~~~~a~~~Ga~~y-----l~KP~~~~~L~~~v~~~  116 (119)
T d1peya_          87 MIQESKELGALTH-----FAKPFDIDEIRDAVKKY  116 (119)
T ss_dssp             HHHHHHHTTCCEE-----EESSCCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCEE-----EECCCCHHHHHHHHHHH
Confidence            8889999999987     44555777666666654

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.17  Score=32.23  Aligned_cols=102  Identities=18%  Similarity=0.167  Sum_probs=66.0

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG  112 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~  112 (157)
                      -.-..+++.|..+..+-   + .+...+.++. ..+|.|++-...||.+|       ++.++.++.......|.+.|--+
T Consensus        16 ~l~~~L~~~g~~v~~a~---~-~~~a~~~~~~-~~~dliilD~~mp~~~g-------~~~~~~~~~~~~~piI~lt~~~~   83 (120)
T d1zgza1          16 RLQSYFTQEGYTVSVTA---S-GAGLREIMQN-QSVDLILLDINLPDENG-------LMLTRALRERSTVGIILVTGRSD   83 (120)
T ss_dssp             HHHHHHHHTTCEEEEES---S-HHHHHHHHHH-SCCSEEEEESCCSSSCH-------HHHHHHHHTTCCCEEEEEESSCC
T ss_pred             HHHHHHHHCCCEEEEEC---C-HHHHHHHHHh-cCCCEEeeehhhccchh-------HHHHHHHhccCCCeEEEEEccCC
Confidence            34455667787765443   2 3333333333 57899988766787554       34455556553323455677777


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      .++..+..++|||.+     +.+.-++.+....+++.++
T Consensus        84 ~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~~i~~~lr  117 (120)
T d1zgza1          84 RIDRIVGLEMGADDY-----VTKPLELRELVVRVKNLLW  117 (120)
T ss_dssp             HHHHHHHHHHTCSEE-----EESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHc
Confidence            788888899999987     5555578888888877765

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=95.08  E-value=0.079  Score=38.14  Aligned_cols=87  Identities=21%  Similarity=0.316  Sum_probs=63.5

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCH-HhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSV-EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~-~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG  110 (157)
                      .++++.+++.++-+.+-....... +..+.+.+  .++..+-+--.         .+..++-|+++++.+|++.|.+..=
T Consensus         5 ~~~~~~l~~~~iipvlr~~~~~~~~~~~~al~~--~Gi~~iEitl~---------~~~a~~~I~~l~~~~p~~~vGaGTV   73 (212)
T d1vhca_           5 QQIIEKLRELKIVPVIALDNADDILPLADTLAK--NGLSVAEITFR---------SEAAADAIRLLRANRPDFLIAAGTV   73 (212)
T ss_dssp             HHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHH--TTCCEEEEETT---------STTHHHHHHHHHHHCTTCEEEEESC
T ss_pred             HHHHHHHHHCCEEEEEeCCCHHHHHHHHHHHHH--CCCCEEEEeCC---------ChhHHHHHHHHHhcCCCceEeeeec
Confidence            688999999887776655332222 23344443  67777765322         2456788899998889998888888


Q ss_pred             CCHhhHHHHHHcCCCEEEE
Q 031554          111 LGPSTIAEAASAGANCIVA  129 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~  129 (157)
                      ++.++++.+.++||+.+|.
T Consensus        74 ~~~~~~~~a~~aGa~FivS   92 (212)
T d1vhca_          74 LTAEQVVLAKSSGADFVVT   92 (212)
T ss_dssp             CSHHHHHHHHHHTCSEEEC
T ss_pred             ccHHHHHHHHhhCCcEEEC
Confidence            8899999999999998864

>d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Listeria innocua [TaxId: 1642]

Probab=95.03  E-value=0.18  Score=36.23  Aligned_cols=118  Identities=13%  Similarity=0.144  Sum_probs=75.1

Q ss_pred             cChHHHH---HHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554            3 TNPLDYV---EPLGKAGASGFTFHVEISKDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE   77 (157)
Q Consensus         3 ~~p~~~i---~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~   77 (157)
                      .+|+.++   +.+.+.|.+.+=++.-. +.. .+.++++|+.-  ++..+..|-..+.+.+..+.++ ...+...+    
T Consensus        15 ~~~e~~~~~~~~~~~~Gf~~~Kikvg~-~~D-~~~v~~ir~~~~~~~l~vDaN~~~~~~~a~~~~~l-~~~~~~wi----   87 (244)
T d1wufa1          15 QNVETLLQLVNQYVDQGYERVKLKIAP-NKD-IQFVEAVRKSFPKLSLMADANSAYNREDFLLLKEL-DQYDLEMI----   87 (244)
T ss_dssp             SCHHHHHHHHHHHHHHTCCEEEEECBT-TBS-HHHHHHHHTTCTTSEEEEECTTCCCGGGHHHHHTT-GGGTCSEE----
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEeCC-cHH-HHHHHHHHHhccchhhhhhhhccccchhhhhhhcc-cccchhhh----
Confidence            4566665   44566899999999754 334 57788888863  3344445555566555444322 23232222    


Q ss_pred             CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccc
Q 031554           78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSS  132 (157)
Q Consensus        78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSa  132 (157)
                          .|++.++.++..+++++.. +.+|+.|-.+. ...+.++.+.| +|++..--.
T Consensus        88 ----EeP~~~~d~~~~~~l~~~~-~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d~~  139 (244)
T d1wufa1          88 ----EQPFGTKDFVDHAWLQKQL-KTRICLDENIRSVKDVEQAHSIGSCRAINLKLA  139 (244)
T ss_dssp             ----ECCSCSSCSHHHHHHHTTC-SSEEEECTTCCSHHHHHHHHHHTCCSEEEECTG
T ss_pred             ----cCcccccchhhhhcccccc-ccccccCccccchhhhhhhccccccceeecccc
Confidence                4455555566677777764 68899998877 68888888887 588876533

>d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=94.99  E-value=0.33  Score=34.85  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=69.2

Q ss_pred             HHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            8 YVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      .++.+.+.|...+=+..-  ..... .+.++.+|+. |  +...+..|-..+.+...++++.+...+...+        .
T Consensus        24 ~~~~~~~~Gf~~~KiKvG~~~~~~D-~~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i--------E   94 (244)
T d2chra1          24 AVEMIERRRHNRFKVKLGFRSPQDD-LIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELI--------E   94 (244)
T ss_dssp             HHHHHHTTSCCEEEEECSSSCHHHH-HHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTCCEE--------E
T ss_pred             HHHHHHhCCCCEEEEEcCCCCHHHH-HHHHHHHHHhcCCCceEEEeCCCCcchHHHHHHHHHHhhhhHHHH--------h
Confidence            334455679999999753  22333 4667777775 4  4555556666666555444431123332221        4


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV  128 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV  128 (157)
                      |++.++.++-++++++.. +++|+.|-.+. .+.+.++++.| +|++.
T Consensus        95 eP~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~~~~i~~~~~d~v~  141 (244)
T d2chra1          95 QPVGRENTQALRRLSDNN-RVAIMADESLSTLASAFDLARDRSVDVFS  141 (244)
T ss_dssp             CCSCSSCHHHHHHHHHHC-SSEEEESSSCCSHHHHHHHHTTTCCSEEC
T ss_pred             hhhhhccchhhhhhccce-eeeeeecccccccchhhhhhhcceeEEEe
Confidence            445555667778888775 78998888877 58888887776 77773

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.14  Score=33.28  Aligned_cols=104  Identities=13%  Similarity=0.173  Sum_probs=64.7

Q ss_pred             HHHHHHcCCc-eEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCc-EEEEcCC
Q 031554           35 VQRIKSKGMR-PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLD-IEVDGGL  111 (157)
Q Consensus        35 i~~ir~~g~~-~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~-I~vdGGI  111 (157)
                      -+.+++.|.+ +..+-+...-++.+++........|.|++--..|+.+|       ++-++++|+. .+..+ |.+-|--
T Consensus        18 ~~~L~~~g~~~v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG-------~el~~~ir~~~~~~~piI~lT~~~   90 (128)
T d2r25b1          18 KRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDG-------LLSTKMIRRDLGYTSPIVALTAFA   90 (128)
T ss_dssp             HHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCH-------HHHHHHHHHHSCCCSCEEEEESCC
T ss_pred             HHHHHHcCCeEEEEEcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCH-------HHHHHHHHHccCCCCeEEEEECCC
Confidence            3445667875 45555444444444443221156888887666688665       4445555543 33455 5667777


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      +.+...++.++|||.+     +.+.=++.+..+.+++.+
T Consensus        91 ~~~~~~~~~~~G~~~~-----l~KP~~~~~L~~~l~~~~  124 (128)
T d2r25b1          91 DDSNIKECLESGMNGF-----LSKPIKRPKLKTILTEFC  124 (128)
T ss_dssp             SHHHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHH
Confidence            8899999999999977     555446666666666544

>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=94.68  E-value=0.046  Score=37.79  Aligned_cols=102  Identities=10%  Similarity=-0.006  Sum_probs=61.8

Q ss_pred             HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhh
Q 031554           36 QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST  115 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~  115 (157)
                      +.....|+.+.-.-. -++.+..+...+  .++|++.+-+...+     +.+..-+-++.||+...+..+.+.|++-.++
T Consensus        58 n~f~~gGfev~~~~~-~~~~e~v~aa~~--~~a~vvvicssd~~-----y~~~~~~~~~aLk~ag~~~~vlaGg~~~~~d  129 (163)
T d7reqb2          58 PVWHIAGIDTPQVEG-GTTAEIVEAFKK--SGAQVADLCSSAKV-----YAQQGLEVAKALKAAGAKALYLSGAFKEFGD  129 (163)
T ss_dssp             HHHHHTTCBCCEEES-CCHHHHHHHHHH--HTCSEEEEECCHHH-----HHHHHHHHHHHHHHTTCSEEEEESCGGGGGG
T ss_pred             HHHHccCeeeccCCC-CCcHHHHHHHHh--CCCCEEEEecCccc-----hHHHHHHHHHHHHhcccceeEEEecCCCccc
Confidence            345556877643222 244445555554  58888776544432     2233445567777776555554444456788


Q ss_pred             HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554          116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  150 (157)
Q Consensus       116 i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~  150 (157)
                      ...+.++|+|.++     +-..|..+.++.+.+.+
T Consensus       130 ~~~l~~aGVd~~i-----~~G~d~~~~l~~l~~~l  159 (163)
T d7reqb2         130 DAAEAEKLIDGRL-----FMGMDVVDTLSSTLDIL  159 (163)
T ss_dssp             GHHHHHHHCCEEE-----CTTCCHHHHHHHHHHHT
T ss_pred             HHHHHhCCCCeEe-----cCCCcHHHHHHHHHHHh
Confidence            8999999999884     33357777777776643

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.32  Score=31.11  Aligned_cols=102  Identities=18%  Similarity=0.168  Sum_probs=66.7

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcC
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGG  110 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGG  110 (157)
                      ..+-+.+++.|.++-.+-   +..+.++.+.+  ..+|.|++---.|+.+|       ++-++++|+. ++++ |.+-|-
T Consensus        16 ~~l~~~L~~~g~~v~~a~---~~~~al~~l~~--~~~dlii~D~~mp~~~G-------~~~~~~~r~~-~~~pii~lt~~   82 (121)
T d1xhfa1          16 NTLKSIFEAEGYDVFEAT---DGAEMHQILSE--YDINLVIMDINLPGKNG-------LLLARELREQ-ANVALMFLTGR   82 (121)
T ss_dssp             HHHHHHHHTTTCEEEEES---SHHHHHHHHHH--SCCSEEEECSSCSSSCH-------HHHHHHHHHH-CCCEEEEEESC
T ss_pred             HHHHHHHHHCCCEEEEEC---ChHHHHHHHHh--cCCCEEEeecccCCccC-------cHHHHHHHhc-CCCcEEEEECC
Confidence            344555677788766554   33444444443  57888877555576555       3344555554 4666 445666


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      -+.++..+..++||+.+     +.+.=++.+....+++.++
T Consensus        83 ~~~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~~v~~~l~  118 (121)
T d1xhfa1          83 DNEVDKILGLEIGADDY-----ITKPFNPRELTIRARNLLS  118 (121)
T ss_dssp             CSHHHHHHHHHHTCSEE-----EESSCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHh
Confidence            66888889999999987     5555588888888888775

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

Probab=94.25  E-value=0.59  Score=33.97  Aligned_cols=121  Identities=15%  Similarity=0.198  Sum_probs=83.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEEEeeeCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLVMTVEPGF   80 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG~   80 (157)
                      ..+..+.+.+++.+.+.....  ... .+.++.+++.|..+.+.+  ...++.+.+.++.+.  -.++|.|.+    +.+
T Consensus        96 ~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l----~DT  170 (289)
T d1nvma2          96 HDLKNAYQAGARVVRVATHCTEADVS-KQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYM----ADS  170 (289)
T ss_dssp             HHHHHHHHHTCCEEEEEEETTCGGGG-HHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEE----ECT
T ss_pred             HHHHHHHHhcccceEEEeehhhhhhH-hHHHHHHHHhCCceeeEeeeccccCchhhhHHHHhhccccceeeee----cch
Confidence            456777888999888874433  334 789999999998876644  344565544333321  136888866    456


Q ss_pred             CCcccchhHHHHHHHHHhhC-CCCcEEEEc----CCCHhhHHHHHHcCCCEEEEccccc
Q 031554           81 GGQKFMPEMMDKVRSLRNRY-PSLDIEVDG----GLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~-~~~~I~vdG----GI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                      .|........+.++.+++.. ++.+|.+=+    |....|.-...++|||.|  =+++.
T Consensus       171 ~G~~~P~~v~~~v~~l~~~~~~~~~i~~H~Hn~~g~a~an~l~A~~~G~~~i--d~si~  227 (289)
T d1nvma2         171 GGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRV--DASLA  227 (289)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEE--EEBGG
T ss_pred             hhcccchhHHHHHHHHHHHhcccccceeeechHHHHHHHHHHHHHHhCCcEe--ecccc
Confidence            67666666777788888875 677787744    666678888899999975  55555

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=94.25  E-value=0.4  Score=31.35  Aligned_cols=102  Identities=13%  Similarity=0.202  Sum_probs=62.4

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEE-EEc
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIE-VDG  109 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~-vdG  109 (157)
                      -+-+.+++.|..+-.+-+...-++.+++     ..+|.|++-...|+.+|       ++-++.+|+.  ..+++|. +-|
T Consensus        16 ~l~~~L~~~g~~v~~a~~~~eal~~~~~-----~~~dlil~D~~~p~~~G-------~~~~~~ir~~~~~~~~piI~lt~   83 (139)
T d1w25a1          16 LLEAKLTAEYYEVSTAMDGPTALAMAAR-----DLPDIILLDVMMPGMDG-------FTVCRKLKDDPTTRHIPVVLITA   83 (139)
T ss_dssp             HHHHHHHHTTCEEEEESSHHHHHHHHHH-----HCCSEEEEESCCSSSCH-------HHHHHHHHHSTTTTTSCEEEEEC
T ss_pred             HHHHHHHHCCCEEEEEccchhhhhhhhc-----ccceeeeeeccccCCCc-------hHHHHHhhhcccccCCCEEEEEc
Confidence            3444456778876555443333333332     46898887666687665       2333444442  3456654 566


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      --+.+...+..++|||-++     .+.-++.+....+++.++
T Consensus        84 ~~~~~~~~~a~~~Ga~dyl-----~KP~~~~~L~~~i~~~lr  120 (139)
T d1w25a1          84 LDGRGDRIQGLESGASDFL-----TKPIDDVMLFARVRSLTR  120 (139)
T ss_dssp             SSCHHHHHHHHHHTCCEEE-----ESSCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHHH
Confidence            6667888899999999884     465577766666665554

>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Outer surface protein, N-terminal domain
domain: Outer surface protein, N-terminal domain
species: Bacillus cereus [TaxId: 1396]

Probab=94.20  E-value=0.16  Score=37.33  Aligned_cols=107  Identities=19%  Similarity=0.269  Sum_probs=65.5

Q ss_pred             HHHHHHHHhCCCCEEEE--c-ccCCcc----hHHHHHHHHHHcCCceEEEecCCCCHH------hHHhhHhcCCCCCeEE
Q 031554            6 LDYVEPLGKAGASGFTF--H-VEISKD----NWQELVQRIKSKGMRPGVALKPGTSVE------EVYPLVEGANPVEMVL   72 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~v--h-~e~~~~----~~~~~i~~ir~~g~~~gl~l~~~t~~~------~~~~~~~~~~~~d~vl   72 (157)
                      ..|++.+.+.|++.|..  | .|..+.    .+.++++.++++|+++.+.++|.+--.      .+..+.++  +++.+ 
T Consensus        20 ~~yi~~a~~~Gf~~iFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~dl~~~~~l--Gi~gl-   96 (244)
T d1x7fa2          20 MAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAEL--GADGI-   96 (244)
T ss_dssp             HHHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHH--TCSEE-
T ss_pred             HHHHHHHHHCCCCEEEecCccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCHHHHHHhCCCHHHHHHHHHC--CCCEE-
Confidence            46899999999998775  2 332222    126788999999999999999987433      23444432  56666 


Q ss_pred             EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCC
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN  125 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad  125 (157)
                        -++-||+++.        +.++.....++.|+.=-....+.+..+...++|
T Consensus        97 --RlD~Gf~~~e--------~a~ms~n~~~l~I~LNaSt~t~~l~~l~~~~~n  139 (244)
T d1x7fa2          97 --RLDVGFDGLT--------EAKMTNNPYGLKIELNVSNDIAYLENILSHQAN  139 (244)
T ss_dssp             --EESSCCSSHH--------HHHHTTCTTCCEEEEETTSCSSHHHHHTTSSCC
T ss_pred             --EEcCCCChHH--------HHHHhcCCcCCEEEEECCcCHHHHHHHHHcCCC
Confidence              3467777632        233333323566666655544556666666664

>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: L-Ala-D/L-Glu epimerase
species: Bacillus subtilis [TaxId: 1423]

Probab=94.12  E-value=0.4  Score=33.96  Aligned_cols=119  Identities=16%  Similarity=0.188  Sum_probs=76.6

Q ss_pred             CcChHHHH---HHHHhCCCCEEEEcccC--CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCC--CCCeE
Q 031554            2 VTNPLDYV---EPLGKAGASGFTFHVEI--SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGAN--PVEMV   71 (157)
Q Consensus         2 v~~p~~~i---~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~--~~d~v   71 (157)
                      +.+|+.++   +.+.+.|.+.+=++.-.  .... .+.++++|+.   ++.+.+..|-....+...++++.+.  ..+..
T Consensus        13 ~~~pe~~~~~a~~~~~~G~~~~Kikig~~~~~~d-~~~i~~ir~~~g~~~~i~vD~N~~~~~~~a~~~~~~le~~~~~i~   91 (234)
T d1jpma1          13 VNSPEEMAADAENYLKQGFQTLKIKVGKDDIATD-IARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIE   91 (234)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCEEEEECSSSCHHHH-HHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHHHHHHcCchhhhhhhcccccchHHHHHHHHHHHhccCcee
Confidence            34687774   55566899999998633  2223 4666777763   4566666777777766655553101  12322


Q ss_pred             EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                      .+        .|++.++.++-++++++.. +.+|+.|.... .....++.+.| +|++..-
T Consensus        92 ~~--------EeP~~~~d~~~~~~l~~~~-~~pia~gE~~~~~~~~~~~i~~~~~d~v~~d  143 (234)
T d1jpma1          92 LV--------EQPVHKDDLAGLKKVTDAT-DTPIMADESVFTPRQAFEVLQTRSADLINIK  143 (234)
T ss_dssp             EE--------ECCSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHHHHHTTCCSEEEEC
T ss_pred             ee--------cCCccccCHHHHHHhhccc-cceeecccccccchhhhhhhccCCcCeEEEe
Confidence            22        4455566677778888774 68899999876 67787887766 8888664

>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methionine synthase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.51  Score=31.89  Aligned_cols=96  Identities=8%  Similarity=0.132  Sum_probs=56.6

Q ss_pred             ccCCcchHHHHH-HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC
Q 031554           24 VEISKDNWQELV-QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS  102 (157)
Q Consensus        24 ~e~~~~~~~~~i-~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~  102 (157)
                      .|..+-. ..++ ..++.+|.+ .+.+.+++|.+.+.+.... ..+|.|.+-+..+.     -.+...+-++.+++..++
T Consensus        16 gD~HdiG-~~iv~~~l~~~G~~-Vi~LG~~~p~e~~~~~~~~-~~~d~i~lS~l~~~-----~~~~~~~~~~~l~~~g~~   87 (156)
T d3bula2          16 GDVHDIG-KNIVGVVLQCNNYE-IVDLGVMVPAEKILRTAKE-VNADLIGLSGLITP-----SLDEMVNVAKEMERQGFT   87 (156)
T ss_dssp             TCCCCHH-HHHHHHHHHTTTCE-EEECCSSBCHHHHHHHHHH-HTCSEEEEECCSTH-----HHHHHHHHHHHHHHTTCC
T ss_pred             CChhhHH-HHHHHHHHHHCCCE-EEECCCCCCHHHHHHHHHh-hCCCEEEEeccccc-----chHHHHHHHHHHHhcccc
Confidence            3444433 3444 446667765 3567888899876555544 57898877433321     133445556777777778


Q ss_pred             CcEEEEcCCCHhhHHHHHH----cCCCEE
Q 031554          103 LDIEVDGGLGPSTIAEAAS----AGANCI  127 (157)
Q Consensus       103 ~~I~vdGGI~~~~i~~~~~----~Gad~v  127 (157)
                      .++.+.||.-.+.......    .|+|+.
T Consensus        88 ~~vivGG~~~~~~~~~~~~~~~y~gad~y  116 (156)
T d3bula2          88 IPLLIGGATTSKAHTAVKIEQNYSGPTVY  116 (156)
T ss_dssp             SCEEEESTTCCHHHHHHHTGGGCSSCEEE
T ss_pred             ceEEEecccccchHHHhhhccccccceee
Confidence            8888888766444433222    366654

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=93.81  E-value=0.44  Score=30.24  Aligned_cols=99  Identities=20%  Similarity=0.223  Sum_probs=62.8

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~  112 (157)
                      .-+.+.+.|.++--..  ++..+.++.+.+  ..+|.|++---.|+.+       .++-++++|+..++.+|.+ -|--+
T Consensus        17 l~~~L~~~g~~v~~~a--~~~~~al~~~~~--~~~dliilD~~mp~~~-------G~e~~~~ir~~~~~~pvi~ls~~~~   85 (118)
T d1u0sy_          17 LKDIITKAGYEVAGEA--TNGREAVEKYKE--LKPDIVTMDITMPEMN-------GIDAIKEIMKIDPNAKIIVCSAMGQ   85 (118)
T ss_dssp             HHHHHHHTTCEEEEEE--SSHHHHHHHHHH--HCCSEEEEECSCGGGC-------HHHHHHHHHHHCTTCCEEEEECTTC
T ss_pred             HHHHHHHcCCceEEEE--CCHHHHHHHHHh--ccCCEEEEecCCCCCC-------HHHHHHHHHHhCCCCcEEEEEccCC
Confidence            3344666787752222  344444444443  4689888765557644       4667777777777777554 55555


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      .+...+..++||+.+     +.+.-++.+..+.+++
T Consensus        86 ~~~~~~a~~~Ga~~y-----l~KP~~~~~L~~~l~~  116 (118)
T d1u0sy_          86 QAMVIEAIKAGAKDF-----IVKPFQPSRVVEALNK  116 (118)
T ss_dssp             HHHHHHHHHTTCCEE-----EESSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHH
Confidence            788889999999987     5555566666666654

>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Amycolatopsis sp. [TaxId: 37632]

Probab=93.79  E-value=0.61  Score=33.12  Aligned_cols=117  Identities=15%  Similarity=0.152  Sum_probs=76.2

Q ss_pred             ChHHHHH---HHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554            4 NPLDYVE---PLGKAGASGFTFHVEISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE   77 (157)
Q Consensus         4 ~p~~~i~---~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~   77 (157)
                      +|+.+.+   .+.+.|...+=++.....+  .+.++++|+.   ++++.+..|-..+.+...++.++ ...+...     
T Consensus        16 ~~~~~~~~~~~~~~~Gf~~~Kikvg~~~D--i~~i~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~l-~~~~~~~-----   87 (242)
T d1sjda1          16 TIPQLLDVVGGYLDEGYVRIKLKIEPGWD--VEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARL-DPFGLLL-----   87 (242)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECBTTBS--HHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHTT-GGGCCSE-----
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEECCchhH--HHHHHHHHHHhCCCeeEeeccccccchhhhhHHhhh-hhhhhHH-----
Confidence            5665554   4467899999999865444  4677777774   45556666666666666566532 2222221     


Q ss_pred             CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccc
Q 031554           78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSS  132 (157)
Q Consensus        78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSa  132 (157)
                         =.|++.+..+...+++++.. +++|+.|-.+. ......+.+.| +|++..--.
T Consensus        88 ---iEeP~~~~d~~~~~~l~~~~-~~pia~gE~~~~~~~~~~~~~~~~~d~~~~d~~  140 (242)
T d1sjda1          88 ---IEQPLEEEDVLGHAELARRI-QTPICLDESIVSARAAADAIKLGAVQIVNIKPG  140 (242)
T ss_dssp             ---EECCSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHHHHHTTCCSEEEECTT
T ss_pred             ---HHhhhhhhhHHHHHHHHhcc-CcccccccccccchhhhhhhhcCccCEEEeccc
Confidence               14556666666777777764 68888887766 68888888887 888866533

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.74  E-value=0.77  Score=33.15  Aligned_cols=116  Identities=21%  Similarity=0.199  Sum_probs=68.4

Q ss_pred             HHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHcCCceEEEecCC-CCHHhHHhhHhc--CCCCCeEEEEeeeC
Q 031554            8 YVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSKGMRPGVALKPG-TSVEEVYPLVEG--ANPVEMVLVMTVEP   78 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~~~~~~~~--~~~~d~vl~m~v~p   78 (157)
                      -++.+.+.|||=+-+......      +.+.+.++.++..|..+-+-+... -+.+.+....++  ..++|+|-   .-.
T Consensus        93 E~~~Ai~~GAdEID~Vin~~~~~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVK---TST  169 (234)
T d1n7ka_          93 EAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVK---TST  169 (234)
T ss_dssp             HHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEE---SCC
T ss_pred             HHHHHHHcCCCeEEEEechhhhhhhhHHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHHHHHHhhhhhee---ecc
Confidence            356778889999888743211      122456666777776555555311 122233322221  26899884   334


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      ||....-.+....++.+... ..++.|=+.|||+ .+++.+++++||+.+
T Consensus       170 G~~~~gat~~~~~~l~~~~~-~~~vgIKasGGIrt~~~a~~~i~aGa~rI  218 (234)
T d1n7ka_         170 GVYTKGGDPVTVFRLASLAK-PLGMGVKASGGIRSGIDAVLAVGAGADII  218 (234)
T ss_dssp             SSSCCCCSHHHHHHHHHHHG-GGTCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             cccCCCCCHHHHHHHHHHhc-CCCCcEEeeCCcCCHHHHHHHHHccCcee
Confidence            65432223343444433322 2357889999999 599999999999965

>d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.62  E-value=0.41  Score=34.01  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=73.6

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      .++.+.+.|.+.+=++.....+  .+.++.+|+.  ++...+..|-..+.+.+..+.++ ...+        ..+=.|++
T Consensus        23 ~~~~~~~~G~~~~Kikvg~~~D--~~~v~~ir~~~~d~~l~vDaN~~~~~~~a~~~~~~-~~~~--------i~~iEeP~   91 (241)
T d1wuea1          23 QVQLAVEKGYQRVKLKIRPGYD--VEPVALIRQHFPNLPLMVDANSAYTLADLPQLQRL-DHYQ--------LAMIEQPF   91 (241)
T ss_dssp             HHHHHHHTTCSCEEEECBTTBS--HHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHGG-GGSC--------CSCEECCS
T ss_pred             HHHHHHHCCCCEEEEEcCccHH--HHHHHHHHHhccccceeecccccCCHHHhhhhhhh-hhhh--------hhhhcCcc
Confidence            3455677899999998765444  4677888876  45555556666677666655532 1111        12224556


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS  131 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS  131 (157)
                      .+..++..+++++.. +.+|+.|-.+. .+.+..+.+.| +|++..--
T Consensus        92 ~~~~~~~~~~l~~~~-~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~  138 (241)
T d1wuea1          92 AADDFLDHAQLQREL-KTRICLDENIRSLKDCQVALALGSCRSINLKI  138 (241)
T ss_dssp             CTTCSHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred             cccchhhhhhhhccc-ccccccCcccccchhhhhhhhhhhhhhhcccc
Confidence            556666778887764 67899998888 57787877776 78886653

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=93.44  E-value=0.51  Score=29.97  Aligned_cols=102  Identities=10%  Similarity=0.150  Sum_probs=60.9

Q ss_pred             HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEE-Ec
Q 031554           33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEV-DG  109 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~v-dG  109 (157)
                      -+-+.+.+.|..+-.+-   +..+.++.+.+  ..+|.|++--..|+.+|       ++-++++|+..  .+++|.+ .+
T Consensus        16 ~l~~~L~~~g~~v~~a~---~~~~al~~~~~--~~~dlil~D~~mp~~dG-------~el~~~ir~~~~~~~iPii~lt~   83 (123)
T d1mb3a_          16 LFHDLLEAQGYETLQTR---EGLSALSIARE--NKPDLILMDIQLPEISG-------LEVTKWLKEDDDLAHIPVVAVTA   83 (123)
T ss_dssp             HHHHHHHHTTCEEEEES---CHHHHHHHHHH--HCCSEEEEESBCSSSBH-------HHHHHHHHHSTTTTTSCEEEEC-
T ss_pred             HHHHHHHHCCCEEEEEC---CHHHHHHHHHh--CCCCEEEEEeccCCCcH-------HHHHHHHHhCCCcCCCCeEEEEE
Confidence            34445666788765443   44444444433  36888877655687555       45566666542  4566444 44


Q ss_pred             CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      .-..+...+..++|+|.+     +.+.=++.+....+++.++
T Consensus        84 ~~~~~~~~~~~~~G~~~~-----l~KP~~~~~L~~~i~~~l~  120 (123)
T d1mb3a_          84 FAMKGDEERIREGGCEAY-----ISKPISVVHFLETIKRLLE  120 (123)
T ss_dssp             -----CHHHHHHHTCSEE-----ECSSCCHHHHHHHHHHHHS
T ss_pred             ecCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHHh
Confidence            444677788889999986     4554577887777777764

>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Leishmania mexicana [TaxId: 5665]

Probab=93.27  E-value=0.23  Score=36.65  Aligned_cols=144  Identities=14%  Similarity=0.136  Sum_probs=88.5

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-c
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-K   84 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-~   84 (157)
                      .++...+.|+|++.+..--....+..+-+.+++.|..+.+.  +.....++.+.+++   ...|.|++---+-|-.-. .
T Consensus        97 di~~a~~~~vD~ialSFVrs~~Dv~~ir~~l~~~~~~~~iiaKIE~~~al~nldeI~---~~sDgImIaRGDLg~ei~~e  173 (258)
T d1pkla2          97 DLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSII---EESDGIMVARGDLGVEIPAE  173 (258)
T ss_dssp             HHHHHHHHTCSEEEETTCCSHHHHHHHHHHHCGGGTTSEEEEEECSHHHHHTHHHHH---HHSSEEEECHHHHTTTSCHH
T ss_pred             HHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHHHcCCCCceEEEecCchhhhhhhhHH---hhCCeeeEechhhhhhcchh
Confidence            46777899999999975544444366666677777777775  44344557788888   678999874222221110 0


Q ss_pred             cchhHHHHHHHHHhhCCCCcEEEEcCC----------CH---hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554           85 FMPEMMDKVRSLRNRYPSLDIEVDGGL----------GP---STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus        85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI----------~~---~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      ..|..-++|-+.++. .+.++.+..-+          |.   ..+...+..|+|++.+..-=-....|.++++.+.++++
T Consensus       174 ~vp~~Qk~Ii~~~~~-~~kpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~imLs~ETa~G~~P~~~V~~l~~i~~  252 (258)
T d1pkla2         174 KVVVAQKILISKCNV-AGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICL  252 (258)
T ss_dssp             HHHHHHHHHHHHHHH-HTCCEEECSSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHH-cCCCEEEEeceeHhhccCCCCCHHHHHHHHHHHHhCCCEEEEccccccCCCHHHHHHHHHHHHH
Confidence            122223332222222 25566665522          22   34455677899999997543334789999999999988


Q ss_pred             HHhh
Q 031554          152 DAQK  155 (157)
Q Consensus       152 ~~~~  155 (157)
                      ++-+
T Consensus       253 ~~E~  256 (258)
T d1pkla2         253 EAQS  256 (258)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7643

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=93.19  E-value=0.2  Score=32.33  Aligned_cols=103  Identities=13%  Similarity=0.090  Sum_probs=63.6

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLG  112 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~  112 (157)
                      +-+.+++.|.++-.+   ++.-+.+..+.+  ..+|.|++--..|+..|       ++-++++++..+..+|.+ -|--+
T Consensus        18 l~~~L~~~g~~v~~a---~~~~~al~~~~~--~~~dliilD~~mp~~~G-------~~~~~~i~~~~~~~~ii~lt~~~~   85 (128)
T d1yioa2          18 LRNLLRSAGFEVETF---DCASTFLEHRRP--EQHGCLVLDMRMPGMSG-------IELQEQLTAISDGIPIVFITAHGD   85 (128)
T ss_dssp             HHHHHHTTTCEEEEE---SSHHHHHHHCCT--TSCEEEEEESCCSSSCH-------HHHHHHHHHTTCCCCEEEEESCTT
T ss_pred             HHHHHHHcCCCcccc---ccHHHHHHHHHh--cCCCEeehhhhcccchh-------HHHHHHHHhhCCCCeEEEEEEECC
Confidence            444466668765333   334444443332  56787766555687655       345666777766666544 34334


Q ss_pred             HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554          113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  153 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~  153 (157)
                      .+...+..++||+.+     |.+.=++.+-...+++.++..
T Consensus        86 ~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~~i~~~l~~~  121 (128)
T d1yioa2          86 IPMTVRAMKAGAIEF-----LPKPFEEQALLDAIEQGLQLN  121 (128)
T ss_dssp             SCCCHHHHHTTEEEE-----EESSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHHHH
Confidence            567778889999876     555557777777787777643

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=93.11  E-value=1.2  Score=33.30  Aligned_cols=126  Identities=17%  Similarity=0.164  Sum_probs=83.1

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCc--c---hHHHHHHHHHHcCCceEEEe------------c----CCCCHHhHHhhHhc
Q 031554            6 LDYVEPLGKAGASGFTFHVEISK--D---NWQELVQRIKSKGMRPGVAL------------K----PGTSVEEVYPLVEG   64 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~--~---~~~~~i~~ir~~g~~~gl~l------------~----~~t~~~~~~~~~~~   64 (157)
                      .+.+..+.++|.+.|.+=.-..+  +   ...++++.++.+|+-+=..|            .    .-|..+.+..+.+.
T Consensus        85 ~e~i~~ai~~GftSVMiDgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~  164 (305)
T d1rvga_          85 YESVLRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMER  164 (305)
T ss_dssp             HHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHH
T ss_pred             hhhhHHHHhcCCceEEEcCccccHHHHHHHHHHHHHHhchhceeEEeeeeeeecccccccccccccccCCHHHHHHHHHH
Confidence            45778889999988887643222  1   11667788888886542111            1    12677888888754


Q ss_pred             CCCCCeEEEE--eeeCCCC-CcccchhHHHHHHHHHhhCCCCcEEEEc-----------------------CCCHhhHHH
Q 031554           65 ANPVEMVLVM--TVEPGFG-GQKFMPEMMDKVRSLRNRYPSLDIEVDG-----------------------GLGPSTIAE  118 (157)
Q Consensus        65 ~~~~d~vl~m--~v~pG~~-gq~~~~~~~~ki~~l~~~~~~~~I~vdG-----------------------GI~~~~i~~  118 (157)
                       .++|.+.+-  ++| |.. +.....-.+++++++++.. ++++..-|                       |+..+.+++
T Consensus       165 -TgvD~LAvaiGn~H-G~Yk~~~~~~l~~~~l~~I~~~~-~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~  241 (305)
T d1rvga_         165 -TGADYLAVAIGTSH-GAYKGKGRPFIDHARLERIARLV-PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKK  241 (305)
T ss_dssp             -HCCSEEEECSSCCS-SSBCSSSSCCCCHHHHHHHHHHC-CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHH
T ss_pred             -hCccHhhhhhhhhh-cccCCCCcccchHHHHHHHHhcc-CCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHH
Confidence             589987652  222 321 1111112466777777774 67888877                       788999999


Q ss_pred             HHHcCCCEEEEccccc
Q 031554          119 AASAGANCIVAGSSVF  134 (157)
Q Consensus       119 ~~~~Gad~vV~GSai~  134 (157)
                      .++.|+.-|=+++.+.
T Consensus       242 ai~~GV~KiNi~T~l~  257 (305)
T d1rvga_         242 AISLGIAKINTDTDLR  257 (305)
T ss_dssp             HHHTTEEEEEECHHHH
T ss_pred             HHHcCeEEEEeChHHH
Confidence            9999999999998663

>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.6  Score=34.07  Aligned_cols=145  Identities=10%  Similarity=0.068  Sum_probs=83.8

Q ss_pred             HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEE--EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554            6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGV--ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-   81 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl--~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-   81 (157)
                      ...+..+.+.|+|+|.+..--....+.++-+.++++| ..+.+  =+.....++.+.+++   ...|.|++=--+-|-. 
T Consensus        77 ~~~i~~a~~~~vD~ialSFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi---~~sDgImIaRGDLg~ei  153 (246)
T d1e0ta2          77 KQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEIL---EASDGIMVARGDLGVEI  153 (246)
T ss_dssp             HHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHH---HHSSEEEEEHHHHHHHS
T ss_pred             chhhhHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhCCCCceEEEEecchhhhhchHHHH---hhcceEEEEccchhhhC
Confidence            4567788899999999985544444355556676664 33444  365455667788888   6789998741111100 


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEcCC----------CH---hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGL----------GP---STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  148 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI----------~~---~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~  148 (157)
                      +-...|..-++|-+.+.. .+.++.+...+          |.   ..+...+..|+|++.+..-=-....|.++++.+.+
T Consensus       154 ~~e~vp~~Qk~ii~~~~~-~~kpvi~ATq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~vmLs~ETa~G~~P~~~v~~l~~  232 (246)
T d1e0ta2         154 PVEEVIFAQKMMIEKCIR-ARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMAT  232 (246)
T ss_dssp             CHHHHHHHHHHHHHHHHH-HTCEEEEECC---------CCCHHHHHHHHHHHHHTCSEEEECCC------CHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH-hCCCEEEehhhhhhhhcCCCCchHHHHHHHHHHHhCCcEEEEccccccCCCHHHHHHHHHH
Confidence            000122233333333332 25666666554          22   34455677899999886433324688999999999


Q ss_pred             HHHHHh
Q 031554          149 SVEDAQ  154 (157)
Q Consensus       149 ~~~~~~  154 (157)
                      +++.+-
T Consensus       233 i~~~~E  238 (246)
T d1e0ta2         233 ICERTD  238 (246)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887643

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.53  Score=29.90  Aligned_cols=101  Identities=14%  Similarity=0.202  Sum_probs=65.0

Q ss_pred             HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEE-EEcC
Q 031554           34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIE-VDGG  110 (157)
Q Consensus        34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~-vdGG  110 (157)
                      +-..+.+.|..+-.+-   +..+.++.+.+  ..+|.|++-...|+.+|       ++-++++|+.  .++.+|. +-|-
T Consensus        16 l~~~L~~~g~~v~~a~---~~~~al~~l~~--~~~dlil~D~~mp~~~G-------~~l~~~lr~~~~~~~~pvi~lt~~   83 (121)
T d1zesa1          16 VCFVLEQNGFQPVEAE---DYDSAVNQLNE--PWPDLILLDWMLPGGSG-------IQFIKHLKRESMTRDIPVVMLTAR   83 (121)
T ss_dssp             HHHHHHHTTCEEEEEC---SHHHHHHHSSS--SCCSEEEECSSCTTSCH-------HHHHHHHHHSTTTTTSCEEEEESC
T ss_pred             HHHHHHHCCCEEEEEC---ChHHHHHHHHc--cCCCEEEeecCCCCCCH-------HHHHHHHHhCccCCCCeEEEEECC
Confidence            3455666787654433   34444444432  56888877656687655       4455666653  3456654 5666


Q ss_pred             CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      -+.++..+..++||+.+     +.+.=++.+....+++.++
T Consensus        84 ~~~~~~~~~~~~G~~d~-----l~KP~~~~~L~~~v~~~lr  119 (121)
T d1zesa1          84 GEEEDRVRGLETGADDY-----ITKPFSPKELVARIKAVMR  119 (121)
T ss_dssp             CSHHHHHHHHHHTCSEE-----EESSCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHc
Confidence            67889999999999987     4555577877777777664

>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Probable two-component system transcriptional regulator Rv1626
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.73  E-value=0.27  Score=33.80  Aligned_cols=101  Identities=19%  Similarity=0.212  Sum_probs=61.9

Q ss_pred             HHHHHHHcCCce-EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCC
Q 031554           34 LVQRIKSKGMRP-GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGL  111 (157)
Q Consensus        34 ~i~~ir~~g~~~-gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdGGI  111 (157)
                      .-..+.+.|..+ +.+=   +..+.++ +++. ..+|.|++---.||.+|       ++-++++|+. ++.+| .+-+--
T Consensus        19 l~~~L~~~g~~vv~~a~---~g~eal~-~~~~-~~pDlvllDi~mP~~dG-------~e~~~~ir~~-~~~pIi~lTa~~   85 (190)
T d1s8na_          19 LAEMLREEGYEIVGEAG---DGQEAVE-LAEL-HKPDLVIMDVKMPRRDG-------IDAASEIASK-RIAPIVVLTAFS   85 (190)
T ss_dssp             HHHHHHHTTCEEEEEES---SHHHHHH-HHHH-HCCSEEEEESSCSSSCH-------HHHHHHHHHT-TCSCEEEEEEGG
T ss_pred             HHHHHHHCCCEEEEEEC---CHHHHHH-HHhc-CCCCEEEEeccccCcch-------HHHHHHHHhc-CCCCEEEEeCCC
Confidence            334455678764 2232   2333333 2222 47899988766788666       4455666665 34554 456666


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  152 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~  152 (157)
                      ..+.+.+..++||+.++.     +.-++.+....++..+..
T Consensus        86 ~~~~~~~al~~Ga~~yl~-----KP~~~~~L~~~i~~~~~~  121 (190)
T d1s8na_          86 QRDLVERARDAGAMAYLV-----KPFSISDLIPAIELAVSR  121 (190)
T ss_dssp             GHHHHHTTGGGSCEEEEE-----ESCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCEecc-----CCCCHHHHHHHHHHHHHh
Confidence            678888889999998855     445666666666665543

>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: RTS beta protein
species: Xanthomonas campestris pv. campestris [TaxId: 340]

Probab=92.71  E-value=0.74  Score=32.98  Aligned_cols=114  Identities=9%  Similarity=0.089  Sum_probs=73.4

Q ss_pred             HHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            8 YVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      .++.+.+.|...+=++.-.. +.. .+.++++|+.   ++++.+..|-..+.+...++++.+...++.        +-.|
T Consensus        22 ~a~~~~~~Gf~~~KikvG~~~~~d-i~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~--------~iEe   92 (252)
T d1yeya1          22 LAKEAVADGFRTIKLKVGANVQDD-IRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIA--------WIEE   92 (252)
T ss_dssp             HHHHHHHTTCSEEEEECCSCHHHH-HHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCS--------CEEC
T ss_pred             HHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHHHhCCCceEeeccccCcchHHHHHHHHhhhhcCce--------eecC
Confidence            34556788999999985432 233 5667777774   455566667777777766666321222222        2245


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                      ++.+.......++++...+++|+.|=.+. ...+.++.+.| +|++.+-
T Consensus        93 P~~~~d~~~~~~~~~~~~~ipia~gE~~~~~~~~~~~i~~~a~d~~~~d  141 (252)
T d1yeya1          93 PTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQID  141 (252)
T ss_dssp             CSCTTCHHHHHHHHHHSTTSCEECCTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred             CcchhhHHHHHHHhhccCCCceeccccccchhhhhhHhhccccceeccc
Confidence            55555566666666665678999888875 78888888777 5887543

>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]

Probab=92.59  E-value=0.54  Score=31.09  Aligned_cols=75  Identities=11%  Similarity=0.154  Sum_probs=53.5

Q ss_pred             CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCc-EEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLD-IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~-I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      .+|.|++--..||.+|       ++-++++|+.  .++++ |.+-+--+.++..++.++||+.+     +.+.-++.+..
T Consensus        62 ~pdlillD~~mP~~~G-------~el~~~ir~~~~~~~ipiI~lT~~~~~~~~~~~~~~Ga~~~-----l~KP~~~~~L~  129 (149)
T d1k66a_          62 RPAVILLDLNLPGTDG-------REVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSY-----IVKPLEIDRLT  129 (149)
T ss_dssp             CCSEEEECSCCSSSCH-------HHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEE-----EECCSSHHHHH
T ss_pred             CCCeEEccccccCCCc-------HHHHHHHHhccccCCCeEEEEeCCCCHHHHHHHHHCCCCEE-----EECCCCHHHHH
Confidence            5788887666688665       4455666553  23455 56678888999999999999987     44545778888


Q ss_pred             HHHHHHHHHH
Q 031554          144 SLMRKSVEDA  153 (157)
Q Consensus       144 ~~l~~~~~~~  153 (157)
                      ..+++.++..
T Consensus       130 ~~i~~~l~~~  139 (149)
T d1k66a_         130 ETVQTFIKYW  139 (149)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877653

>d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Pseudomonas sp. p51 [TaxId: 65067]

Probab=92.46  E-value=0.41  Score=34.26  Aligned_cols=112  Identities=14%  Similarity=0.130  Sum_probs=70.6

Q ss_pred             HHHHHhCCCCEEEEcc--cCCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            9 VEPLGKAGASGFTFHV--EISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         9 i~~~~~~gad~v~vh~--e~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      ++.+.+.|...+-+..  ...... .+.++++|+.   ++.+.+..|-..+++.+.++++.+...++..        -.|
T Consensus        25 ~~~~~~~G~~~~KiKvG~~~~~~D-i~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~--------iEe   95 (243)
T d1nu5a1          25 LEMIETRRHNRFKVKLGARTPAQD-LEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVEL--------VEQ   95 (243)
T ss_dssp             HHHHHTTSCSEEEEECSSSCHHHH-HHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCE--------EEC
T ss_pred             HHHHHhCCCCEEEEEeCCCCHHHH-HHHHHHHHHHhCcccceEEECCCCccchhHHHHHHHhcchhhhh--------hhh
Confidence            3444457999999975  333333 4556666553   4555666676777776666653102222221        145


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                      ++.+..++.++++++.. +++|+.|-.+. .++...+.+.| +|++..-
T Consensus        96 P~~~~~~~~~~~l~~~~-~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d  143 (243)
T d1nu5a1          96 PVPRANFGALRRLTEQN-GVAILADESLSSLSSAFELARDHAVDAFSLK  143 (243)
T ss_dssp             CSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             hhhhccccccccchhcc-ccccccccccccchhhhhccccccccccccc
Confidence            56666677788888875 68999988877 68888888877 5777554

>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.41  E-value=1.5  Score=32.46  Aligned_cols=135  Identities=17%  Similarity=0.202  Sum_probs=81.2

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC----------CC--CHHhHHhhHhcCCCCCeEEEE
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP----------GT--SVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~----------~t--~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      +-.+.+.+.|++.+.+-.-..-   ...++.+++. ...-+..++          ..  +...+.++.++ .++|.+.+.
T Consensus       103 ~ra~~~~~~G~~~~mv~~~~~G---~~a~~~l~~~-~~lpi~~H~a~~g~~~r~~~~Gis~~vl~KL~RL-aGaD~ih~~  177 (283)
T d1ykwa1         103 EKHDVAVRNGANALLINALPVG---LSAVRMLSNY-TQVPLIGHFPFIASFSRMEKYGIHSKVMTKLQRL-AGLDAVIMP  177 (283)
T ss_dssp             HHHHHHHHHTCCEEEEEHHHHC---HHHHHHHHHH-CSSCEEEECTTTHHHHCSTTSEECHHHHHHHHHH-HTCSEEEEE
T ss_pred             HHHHHHHHhCCCEEEEecccch---HHHHHHHHhh-cCCCeEeeeccceeeccCcCCCccHHHHHHHHHH-cCCCceeec
Confidence            4456778889998888643322   4556666663 222222222          11  23345666666 699999874


Q ss_pred             eeeCCCCCcc-cc-hhHHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHHH-HcC-CCEEE-EcccccCCCC-HHHHHH
Q 031554           75 TVEPGFGGQK-FM-PEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAA-SAG-ANCIV-AGSSVFGAPE-PAHVIS  144 (157)
Q Consensus        75 ~v~pG~~gq~-~~-~~~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~~-~~G-ad~vV-~GSai~~~~d-~~~~~~  144 (157)
                          +++|.. +. ++.++...++.+-    .+-+++ .-||+++..++.+. ..| .|++. +|.+|+..+| +..=.+
T Consensus       178 ----~~gg~~~~~~e~~~~~~~~~~~~~~~~k~~~Pv-~sGG~~~~~vp~~~~~~G~~Dvil~aGGGi~gHP~G~~aGa~  252 (283)
T d1ykwa1         178 ----GFGDRVMTPEEEVLENVIECTKPMGRIKPCLPV-PGGSDSALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAK  252 (283)
T ss_dssp             ----CSSTTSSSCHHHHHHHHHHHHSCCTTCCCCEEE-EECSBCTTTHHHHHHHHCSSCSEECBSSSSSSCTTCHHHHHH
T ss_pred             ----CCcccccCchHHHHHHHHHhcCcccccCCceee-ccCCcchhhhHHHHHhcCCceEEEecCcccccCCCchHHHHH
Confidence                444422 22 2334444444331    233455 89999999998764 578 57776 6889998875 666667


Q ss_pred             HHHHHHH
Q 031554          145 LMRKSVE  151 (157)
Q Consensus       145 ~l~~~~~  151 (157)
                      .+|+.++
T Consensus       253 A~rqA~e  259 (283)
T d1ykwa1         253 SIRQAWE  259 (283)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777655

>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Putative alpha-L-fucosidase, catalytic domain
domain: Putative alpha-L-fucosidase, catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.37  E-value=0.3  Score=37.34  Aligned_cols=48  Identities=23%  Similarity=0.362  Sum_probs=39.4

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCC---------------------cchHHHHHHHHHHcCCceEEEecC
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEIS---------------------KDNWQELVQRIKSKGMRPGVALKP   51 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~---------------------~~~~~~~i~~ir~~g~~~gl~l~~   51 (157)
                      ||..+++.+.++|+.++.+-..-.                     .+.+.++.+++|++|+++|+-.++
T Consensus       100 Da~~Wv~~ak~aGaky~vlTaKHHDGF~Lw~S~~t~~n~~~~~~~rDiv~el~~A~rk~Glk~G~YyS~  168 (350)
T d1hl9a2         100 DPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRFGVYYSG  168 (350)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEECEEECC
T ss_pred             CHHHHHHHHHHcCCCEEEEEEEecCCcccCCCCCCCCCCcCCCCCCchHHHHHHHHHhcCCceeEEecc
Confidence            799999999999999998742111                     245689999999999999998874

>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.33  E-value=0.58  Score=34.77  Aligned_cols=140  Identities=12%  Similarity=0.106  Sum_probs=89.9

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEE----eeeCCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVM----TVEPGF   80 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m----~v~pG~   80 (157)
                      ..+....+.|+|++.+..--....+..+-+.++++|..+.+.  +.....++.+.+++   ...|.|++-    +++-+ 
T Consensus       113 ~di~~a~~~~vD~ialSFVrs~~DI~~~r~~l~~~g~~~~IiaKIE~~~al~NldeIi---~~sDgIMIaRGDLg~ei~-  188 (282)
T d2g50a2         113 QDLKFGVEQDVDMVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEIL---EASDGIMVARGDLGIEIP-  188 (282)
T ss_dssp             HHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHH---HHSSEEEEEHHHHHHHSC-
T ss_pred             HHHHHhhhccccceeecccCCHHHHHHHHHHHHHcCCCceEEEeecchhhhhcchhhc---cccceeeeeccccccccC-
Confidence            346677899999999986554444466666677777666664  55555667788888   678999874    23222 


Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCC----------CH---hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL----------GP---STIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI----------~~---~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                        ....|..-++|-+.++. .+.++.+..-+          |.   ..+...+..|+|++.+..---..+.|.++++.+.
T Consensus       189 --~e~vp~~Qk~Ii~~~~~-~~kpvivAt~~leSMi~~~~pTRaEv~Dianav~~G~D~imLs~ETa~G~~p~~~V~~l~  265 (282)
T d2g50a2         189 --AEKVFLAQKMIIGRCNR-AGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQH  265 (282)
T ss_dssp             --GGGHHHHHHHHHHHHHH-HTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHH
T ss_pred             --HHHhHHHHHHHHHHHHh-cCCcEEEecccccccccCCCCCHHHHHHHHHHHHhCCCEEEECcccccCCCHHHHHHHHH
Confidence              11223333343332222 24666665433          32   3344568889999999854333478999999999


Q ss_pred             HHHHHH
Q 031554          148 KSVEDA  153 (157)
Q Consensus       148 ~~~~~~  153 (157)
                      ++++.+
T Consensus       266 ~i~~~~  271 (282)
T d2g50a2         266 LIAREA  271 (282)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988864

>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain
species: Clostridium sticklandii [TaxId: 1511]

Probab=91.60  E-value=1.3  Score=29.97  Aligned_cols=96  Identities=15%  Similarity=0.097  Sum_probs=59.0

Q ss_pred             EEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC--CCcEEEEcCCCHhhHHHHHHcCC
Q 031554           47 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP--SLDIEVDGGLGPSTIAEAASAGA  124 (157)
Q Consensus        47 l~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~--~~~I~vdGGI~~~~i~~~~~~Ga  124 (157)
                      +.+..++|.+.+.+...- ..+|.|.+-+.......  ..+..-+-++.+++...  +++|.+.|++-.+  ..+.+.||
T Consensus        60 i~LG~~vp~e~~v~~a~e-~~~d~VglS~l~t~~~~--h~~~~~~~i~~l~~~g~~d~v~vivGG~~~~~--~~a~~~Ga  134 (160)
T d1xrsb1          60 YNLGSQVANEDFIKKAVE-LEADVLLVSQTVTQKNV--HIQNMTHLIELLEAEGLRDRFVLLCGGPRINN--EIAKELGY  134 (160)
T ss_dssp             EECCSSBCHHHHHHHHHH-TTCSEEEEECCCCTTSH--HHHHHHHHHHHHHHTTCGGGSEEEEECTTCCH--HHHHTTTC
T ss_pred             EeCCCCCCHHHHHHHHHh-cCCCEEEEeecccccch--hHHHHHHHHHHHHHcCCCCceEEEEcCCCCCH--HHHHHcCC
Confidence            357778888775444433 68999987544432111  12233444667776643  4788888866533  34567899


Q ss_pred             CEEEEcccccCC-CCHHHHHHHHHHHHHHH
Q 031554          125 NCIVAGSSVFGA-PEPAHVISLMRKSVEDA  153 (157)
Q Consensus       125 d~vV~GSai~~~-~d~~~~~~~l~~~~~~~  153 (157)
                      |.+      |.. .++.+.+..+.+.+++.
T Consensus       135 D~~------f~~g~~a~~~a~~l~~~l~~r  158 (160)
T d1xrsb1         135 DAG------FGPGRFADDVATFAVKTLNDR  158 (160)
T ss_dssp             SEE------ECTTCCHHHHHHHHHHHHHHH
T ss_pred             CEE------cCCCCCHHHHHHHHHHHHHHh
Confidence            976      332 46777788888777643

>d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein YitF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.55  E-value=1.5  Score=31.29  Aligned_cols=112  Identities=11%  Similarity=0.081  Sum_probs=69.2

Q ss_pred             HHHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554            7 DYVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG   81 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~   81 (157)
                      ..++.+.+.|...+=++.-  ..+.. .+.++++|+.   ++.+.+..|...+++...++++.+...+.+..  +     
T Consensus        27 ~~~~~~~~~Gf~~~Kikvg~~~~~~d-i~~v~avr~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~~i~~--~-----   98 (256)
T d2gdqa1          27 SNVEAQLKKGFEQIKVKIGGTSFKED-VRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGW--L-----   98 (256)
T ss_dssp             HHHHHHHTTTCCEEEEECSSSCHHHH-HHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEE--E-----
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHHHHHHcCCCeEEeeccccCCCHHHHHHHHHHHhhcCceeE--e-----
Confidence            3456667889999999863  33344 5667788873   45556666777777766655532122222221  1     


Q ss_pred             CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEE
Q 031554           82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCI  127 (157)
Q Consensus        82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~v  127 (157)
                      .|++.+..++-.+++++.. +++|+.|=.+. .+++.++++.| +|++
T Consensus        99 EeP~~~~d~~~~~~l~~~~-~ipIa~gE~~~~~~~~~~~i~~~a~di~  145 (256)
T d2gdqa1          99 EEPLPFDQPQDYAMLRSRL-SVPVAGGENMKGPAQYVPLLSQRCLDII  145 (256)
T ss_dssp             ECCSCSSCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred             ccccccchHHHHHHHhhcc-cceeecCccccchhhHHHHHHhhcceee
Confidence            3344455566777777763 68887776665 67888877665 5555

>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.97  E-value=0.32  Score=35.97  Aligned_cols=140  Identities=13%  Similarity=0.138  Sum_probs=85.7

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC--CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT--SVEEVYPLVEGANPVEMVLVMTVEPGFGGQK   84 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~   84 (157)
                      ..++.+.+.|+|+|.+..--..+.+..+-+.+++.|..+.+....++  .++.+.+++   ...|.|++--   |--|-.
T Consensus        96 ~di~~a~~~~vD~ialSFVrs~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi---~~sDgimIaR---GDLgve  169 (265)
T d1a3xa2          96 EDLRFGVKNGVHMVFASFIRTANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEIL---KVTDGVMVAR---GDLGIE  169 (265)
T ss_dssp             HHHHHHHHTTCCEECCTTCCSHHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHHHH---HHCSEEEEEH---HHHHHH
T ss_pred             HHHHHhhhcccceEeeccCCCHHHHHHHHHHHHHhcCCCeEEeeccchHHHhChHHHH---hhcceeEEEc---cchhhh
Confidence            44677899999999998654444435555556566656655543344  556788888   6789998741   211111


Q ss_pred             c----chhHHHHHHHHHhhCCCCcEEEEcCC----------CHhh---HHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554           85 F----MPEMMDKVRSLRNRYPSLDIEVDGGL----------GPST---IAEAASAGANCIVAGSSVFGAPEPAHVISLMR  147 (157)
Q Consensus        85 ~----~~~~~~ki~~l~~~~~~~~I~vdGGI----------~~~~---i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~  147 (157)
                      .    .|...++|-+.++. .+.++.+..-+          |...   +...+..|+|++.+..-=-....|.++++.+.
T Consensus       170 i~~e~vp~~Qk~Ii~~~~~-~gkpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~vmLs~ETA~G~~Pv~~V~~~~  248 (265)
T d1a3xa2         170 IPAPEVLAVQKKLIAKSNL-AGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAVTTMA  248 (265)
T ss_dssp             SCHHHHHHHHHHHHHHHHH-HTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEECCSHHHHSCSCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHH-cCCcEEehhhhhhhhccCCCCcHHHHHHHHHHHHhCCCEEEEccccccCCCHHHHHHHHH
Confidence            1    12223333333332 25666676655          3333   34457779999988743333478999999999


Q ss_pred             HHHHHH
Q 031554          148 KSVEDA  153 (157)
Q Consensus       148 ~~~~~~  153 (157)
                      ++++.+
T Consensus       249 ~I~~~~  254 (265)
T d1a3xa2         249 ETAVIA  254 (265)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            988764

>d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Mandelate racemase
species: Pseudomonas putida [TaxId: 303]

Probab=90.81  E-value=0.73  Score=32.48  Aligned_cols=112  Identities=10%  Similarity=0.145  Sum_probs=69.8

Q ss_pred             HHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHc-CCc--eEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554            8 YVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSK-GMR--PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG   82 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~-g~~--~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g   82 (157)
                      .+..+.+.|...+=++.-..  +.. .+.++++|+. |-.  ..+..|-..+.+...++++.+...++..+        .
T Consensus        19 ~~~~~~~~G~~~~KikvG~~~~~~d-i~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~i--------E   89 (227)
T d2mnra1          19 RAVTAAELGFRAVKTKIGYPALDQD-LAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWI--------E   89 (227)
T ss_dssp             HHHHHHHTTCSEEEEECCCSSHHHH-HHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHTCSEE--------E
T ss_pred             HHHHHHHCCCCEEEEccCCCCHHHH-HHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHHhhhchhhhh--------c
Confidence            34456677999999986322  233 5667777773 444  45555666666665555531022222111        4


Q ss_pred             cccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCC-CEEEE
Q 031554           83 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA-NCIVA  129 (157)
Q Consensus        83 q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Ga-d~vV~  129 (157)
                      |++.+..++-.+++++.. +.+|++|-.+. .++...+.+.|+ |++..
T Consensus        90 eP~~~~~~~~~~~l~~~~-~ipia~gE~~~~~~~~~~~~~~~~~d~~~~  137 (227)
T d2mnra1          90 EPTLQHDYEGHQRIQSKL-NVPVQMGENWLGPEEMFKALSIGACRLAMP  137 (227)
T ss_dssp             CCSCTTCHHHHHHHHHTC-SSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             CcccccchhhhHHHHHHc-CCccccCceeEeechhhhhHhcCceeeeec
Confidence            556666677777887763 78899998887 688888777664 66544

>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Nicotinate phosphoribosyltransferase Ta1145
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=90.78  E-value=0.51  Score=34.82  Aligned_cols=36  Identities=33%  Similarity=0.525  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554          101 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA  136 (157)
Q Consensus       101 ~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~  136 (157)
                      +++.|.+-+|++++.|.++.++++|.|=+|+.+...
T Consensus       144 ~~vkIi~S~glde~~I~~l~~~~~d~fGvGt~Lvt~  179 (270)
T d1ytda1         144 SDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSA  179 (270)
T ss_dssp             TTSEEEEESSCCHHHHHHHHHHTCCEEEECHHHHTC
T ss_pred             CcceEEECCCCCHHHHHHHHhcCCceEeeccccccC
Confidence            689999999999999999999999999999988654

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=90.73  E-value=1.9  Score=30.44  Aligned_cols=114  Identities=19%  Similarity=0.229  Sum_probs=66.3

Q ss_pred             HHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHc--CCceEEEecC-CCCHHhHHhhHhc--CCCCCeEEEEee
Q 031554            8 YVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSK--GMRPGVALKP-GTSVEEVYPLVEG--ANPVEMVLVMTV   76 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~--g~~~gl~l~~-~t~~~~~~~~~~~--~~~~d~vl~m~v   76 (157)
                      -++.+.+.|||=+-+-....      .+.+.+.++.+++.  +...-+-+.. .-+.+.+....++  ..++|+|-   .
T Consensus        75 e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiK---T  151 (211)
T d1ub3a_          75 EAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLK---T  151 (211)
T ss_dssp             HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEE---C
T ss_pred             HHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccCCHHHHHHHHHHHHHhccceEE---e
Confidence            45677889999888774221      11225556666663  2222222311 1122333332221  15889884   3


Q ss_pred             eCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           77 EPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        77 ~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      -.||+...   ...+.++.+++.. .++.|=+.|||+ .+++.+++++|++-+
T Consensus       152 STG~~~~g---at~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~aGa~ri  201 (211)
T d1ub3a_         152 STGFGPRG---ASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRL  201 (211)
T ss_dssp             CCSSSSCC---CCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             cCCCCCCC---CCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHHhhhHh
Confidence            35665433   2344455555543 468899999999 799999999999976

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=90.63  E-value=1.9  Score=31.78  Aligned_cols=82  Identities=15%  Similarity=0.130  Sum_probs=51.4

Q ss_pred             ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC----CcccchhHHHHHHHHHhhCCCCcEE--EEcCCCHhhHHHHHHc
Q 031554           49 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG----GQKFMPEMMDKVRSLRNRYPSLDIE--VDGGLGPSTIAEAASA  122 (157)
Q Consensus        49 l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~----gq~~~~~~~~ki~~l~~~~~~~~I~--vdGGI~~~~i~~~~~~  122 (157)
                      .......+...+..+. ...+.+.+-.-.|...    +.......++.++++++......+.  +..+.+++.+..+.++
T Consensus       103 ~~~~~~~~~~~~~~~~-~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~  181 (329)
T d1p0ka_         103 LGSEATAAQAKEAVEM-IGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA  181 (329)
T ss_dssp             EETTCCHHHHHHHHHH-TTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH
T ss_pred             eccchhHHHHHHHHHH-cCCCEEEecccccchhhhccccccccchHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhc
Confidence            4445566666555543 4677766543333322    1122345678899999875443333  5566789999999999


Q ss_pred             CCCEEEEcc
Q 031554          123 GANCIVAGS  131 (157)
Q Consensus       123 Gad~vV~GS  131 (157)
                      |||.++++.
T Consensus       182 GaD~i~v~~  190 (329)
T d1p0ka_         182 GAAAVDIGG  190 (329)
T ss_dssp             TCSEEEEEC
T ss_pred             CCCEEEEcC
Confidence            999999863

>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein Atu3453
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.58  E-value=1.2  Score=31.66  Aligned_cols=117  Identities=15%  Similarity=0.179  Sum_probs=72.4

Q ss_pred             ChHHHHHH---HHhCCCCEEEEcccCC--------cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCC
Q 031554            4 NPLDYVEP---LGKAGASGFTFHVEIS--------KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVE   69 (157)
Q Consensus         4 ~p~~~i~~---~~~~gad~v~vh~e~~--------~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d   69 (157)
                      .|+.+.+.   +.+.|...+=++.-..        +.. .+.++++|+. |  +...+..|-..+.+.+.++++.+...+
T Consensus        23 tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~~d-~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~  101 (255)
T d1rvka1          23 TPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMD-LKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLG  101 (255)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHH-HHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCCCCccccccCHHHH-HHHHHHHHHHcCCccceecccccccccchhhhhhhhcccch
Confidence            57666554   4778999999985421        223 5667777774 4  555666677777766555543112222


Q ss_pred             eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-H-hhHHHHH-HcCCCEEEEc
Q 031554           70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-P-STIAEAA-SAGANCIVAG  130 (157)
Q Consensus        70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~-~~i~~~~-~~Gad~vV~G  130 (157)
                      ...+        .|+..+..++-.+++++.. +.+|++|..+. . +....++ ...+|++...
T Consensus       102 l~~i--------EeP~~~~d~~~~~~l~~~~-~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~d  156 (255)
T d1rvka1         102 FDWI--------EEPMDEQSLSSYKWLSDNL-DIPVVGPESAAGKHWHRAEWIKAGACDILRTG  156 (255)
T ss_dssp             CSEE--------ECCSCTTCHHHHHHHHHHC-SSCEEECSSCSSHHHHHHHHHHTTCCSEEEEC
T ss_pred             hhhh--------cCCcccccHHHHHHHHHhc-ccceeehhhcccchhhhhhhhhhchhhhcccc
Confidence            2221        5556666677778888874 68899999985 4 3455554 5667777544

>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=90.57  E-value=1.3  Score=29.35  Aligned_cols=76  Identities=18%  Similarity=0.314  Sum_probs=52.7

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEE-EEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIE-VDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  142 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~-vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~  142 (157)
                      ..+|.|++--..|+.+|       ++-++++|+.  .++++|. +-+--..++..+..++||+-+     +.+.-++.+.
T Consensus        54 ~~~DlillD~~mP~~dG-------~el~~~ir~~~~~~~iPiI~lt~~~~~~~~~~a~~~Ga~d~-----l~KP~~~~~L  121 (153)
T d1w25a2          54 GPVDLVIVNAAAKNFDG-------LRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDI-----LSRPIDPQEL  121 (153)
T ss_dssp             SSCSEEEEETTCSSSCH-------HHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEE-----EESSCCHHHH
T ss_pred             CCCCEEEEECccccccc-------hHHHHHHHhccccccceeEEeecCCCHHHHHHHHhcCcceE-----EECCCCHHHH
Confidence            57899888666687665       4455666543  3566654 455555788889999999987     4565578877


Q ss_pred             HHHHHHHHHHH
Q 031554          143 ISLMRKSVEDA  153 (157)
Q Consensus       143 ~~~l~~~~~~~  153 (157)
                      ...+++.++.+
T Consensus       122 ~~~i~~~l~~~  132 (153)
T d1w25a2         122 SARVKTQIQRK  132 (153)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777776643

>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TTHA0625-like
domain: Hypothetical protein TTHA0625
species: Thermus thermophilus [TaxId: 274]

Probab=90.53  E-value=0.16  Score=37.41  Aligned_cols=55  Identities=20%  Similarity=0.305  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHhhCCCCcEE------EEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           88 EMMDKVRSLRNRYPSLDIE------VDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~------vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      ...+.+.++|+.+ ++-|+      -..|||++...++.++|+|++..|--+|..++..+.+
T Consensus        17 ~v~~~Lp~Lk~~~-DfVIaNgENaa~G~Git~k~~~~L~~~GVDvIT~GNH~wdkkei~~~i   77 (252)
T d2z06a1          17 AVGLHLPDIRDRY-DLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALL   77 (252)
T ss_dssp             HHHHHHHHHGGGC-SEEEEECTTTTTTSSCCHHHHHHHHHHTCCEEECCTTTTSCTTHHHHH
T ss_pred             HHHHHhHHHHhhC-CEEEEeeeccCCCcCCCHHHHHHHHHhCCCEEEcCcccccchhhhhhh
Confidence            3445677777764 55332      1469999999999999999999999999777765544

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.45  E-value=2.1  Score=30.51  Aligned_cols=111  Identities=21%  Similarity=0.267  Sum_probs=65.8

Q ss_pred             HHHHHhCCCCEEEEcccCC----c--chHHHHHHHHHHc--CCceEEEecCCCCH---HhHHhhHhc--CCCCCeEEEEe
Q 031554            9 VEPLGKAGASGFTFHVEIS----K--DNWQELVQRIKSK--GMRPGVALKPGTSV---EEVYPLVEG--ANPVEMVLVMT   75 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~----~--~~~~~~i~~ir~~--g~~~gl~l~~~t~~---~~~~~~~~~--~~~~d~vl~m~   75 (157)
                      ++.+.+.|||=+-+-....    .  +.+.+.++.+++.  |.-.-+-+  +|+.   +.+....++  ..++|+|-   
T Consensus        76 ~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIl--Et~~L~~~ei~~a~~~a~~aGadfiK---  150 (225)
T d1mzha_          76 AVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIV--ETPYLNEEEIKKAVEICIEAGADFIK---  150 (225)
T ss_dssp             HHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEEC--CGGGCCHHHHHHHHHHHHHHTCSEEE---
T ss_pred             HHHHHHcCCCeEEEeechhhhhcccHHHHHHHHHHHHHhccCceeehhh--hhccCCHHHHHHHHHHHHHcccceEe---
Confidence            5677889999887764321    1  1224445555553  33222333  3322   222222221  26899984   


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      .-.||+...-   .++.++.+++. .+++.|=+.|||+ .+++.++.++|++-+
T Consensus       151 TSTG~~~~ga---t~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~Ri  201 (225)
T d1mzha_         151 TSTGFAPRGT---TLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI  201 (225)
T ss_dssp             CCCSCSSSCC---CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             ecCCCCCCCC---CHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhhe
Confidence            3456654332   33455555554 3468899999999 799999999999975

>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Muconate-lactonizing enzyme
species: Pseudomonas putida [TaxId: 303]

Probab=90.31  E-value=1.6  Score=30.89  Aligned_cols=110  Identities=14%  Similarity=0.030  Sum_probs=69.0

Q ss_pred             HHHhCCCCEEEEcccC--CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554           11 PLGKAGASGFTFHVEI--SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus        11 ~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      .+.+.|...+=+..-.  .+.. .+.++++|+.   +.++.+..|-..+.+.+.++++.+...++..        =.|++
T Consensus        27 ~~~~~G~~~~KiKvG~~~~~~D-i~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~--------iEeP~   97 (242)
T d1muca1          27 MLEIRRHRVFKLKIGANPVEQD-LKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGIDL--------IEQPI   97 (242)
T ss_dssp             HHHTTSCSEEEEECSSSCHHHH-HHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHHTTCCC--------EECCB
T ss_pred             HHHHCCCCEEEEEECCCCHHHH-HHHHHHHHHHhCCCCEEEEecCCCCcHHHHHHHHHHhhhhhHHH--------hhcch
Confidence            3345699999886532  2333 4667777773   5566666676666665555543102222111        14555


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                      .+..++-.+++++.. +++|+.|..+. .+++..+++.| +|++..-
T Consensus        98 ~~~d~~~~~~L~~~~-~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d  143 (242)
T d1muca1          98 SRINRGGQVRLNQRT-PAPIMADESIESVEDAFSLAADGAASIFALK  143 (242)
T ss_dssp             CTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred             hhhhhhhhhhhhhhh-hheeecccccccccchhhhhhcccccccccc
Confidence            556667777887774 58899999887 68888888776 7887553

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=2.2  Score=30.18  Aligned_cols=121  Identities=10%  Similarity=0.136  Sum_probs=80.2

Q ss_pred             ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554            4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ   83 (157)
Q Consensus         4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq   83 (157)
                      +-...++.+.+.|...+-+-... +.. .+.|+.++++--.+-+-...=+..+.++...+  .++++++    .||+   
T Consensus        28 ~a~~~~~al~~~Gi~~iEitl~t-p~a-~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~--aGa~Fiv----SP~~---   96 (213)
T d1wbha1          28 HAVPMAKALVAGGVRVLNVTLRT-ECA-VDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTE--AGAQFAI----SPGL---   96 (213)
T ss_dssp             GHHHHHHHHHHTTCCEEEEESCS-TTH-HHHHHHHHHHCTTSEEEEESCCSHHHHHHHHH--HTCSCEE----ESSC---
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCC-hhH-HHHHHHHHHHCCCCeeeccccccHHHHHHHHH--CCCcEEE----CCCC---
Confidence            34567888999999999999865 445 78888888752233333444466777776666  4888885    4873   


Q ss_pred             ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCC--HHHHHHHHH
Q 031554           84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE--PAHVISLMR  147 (157)
Q Consensus        84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d--~~~~~~~l~  147 (157)
                        .++.++..+   +.  ++ ..+=|..|+..+....++|++++=    +|-+..  +...++.++
T Consensus        97 --~~~v~~~a~---~~--~i-~~iPGv~TpsEi~~A~~~G~~~vK----lFPA~~~Gg~~~lkal~  150 (213)
T d1wbha1          97 --TEPLLKAAT---EG--TI-PLIPGISTVSELMLGMDYGLKEFK----FFPAEANGGVKALQAIA  150 (213)
T ss_dssp             --CHHHHHHHH---HS--SS-CEEEEESSHHHHHHHHHTTCCEEE----ETTTTTTTHHHHHHHHH
T ss_pred             --CHHHHHHHH---hc--CC-CccCCcCCHHHHHHHHHCCCCEEE----eccchhcChHHHHHHhc
Confidence              344444333   22  33 458899999999999999999883    454332  234445444

>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermus thermophilus [TaxId: 274]

Probab=90.05  E-value=0.65  Score=32.36  Aligned_cols=69  Identities=22%  Similarity=0.162  Sum_probs=41.2

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccC-CcchH-HHHHHHH-HH---cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEI-SKDNW-QELVQRI-KS---KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~-~~~~~-~~~i~~i-r~---~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      .+++ -++.+.++|||++=|.... .+..+ .+..+.+ +.   .-..+|+..+  .+.+.+.++++. ..+|+|++.+
T Consensus         9 t~~e-d~~~~~~~gad~iGfif~~~SpR~vs~~~a~~i~~~~~~~~~~V~Vf~~--~~~~~i~~~~~~-~~~d~vQlHg   83 (200)
T d1v5xa_           9 TRLE-DALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRD--QPPEEVLRLMEE-ARLQVAQLHG   83 (200)
T ss_dssp             CCHH-HHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESS--CCHHHHHHHHHH-TTCSEEEECS
T ss_pred             CcHH-HHHHHHhCCCCEEEEEcCCCCCCCcCHHHHHHHHHhhcCceeeeeeeee--chhhhhhhhhcc-cccccccccc
Confidence            3455 4788999999999876432 22211 2222333 22   2355677774  556666666544 4789999974

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.02  E-value=2.5  Score=30.65  Aligned_cols=114  Identities=17%  Similarity=0.176  Sum_probs=69.2

Q ss_pred             HHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHc--CCceEEEecCCCC---HHhHHhhHhc--CCCCCeEEEE
Q 031554            8 YVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSK--GMRPGVALKPGTS---VEEVYPLVEG--ANPVEMVLVM   74 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~--g~~~gl~l~~~t~---~~~~~~~~~~--~~~~d~vl~m   74 (157)
                      -++.+.+.|||=+-+-....      .+.+.+.++.+++.  |..+-+-+  +|+   .+.+....++  ..++|+|-  
T Consensus       108 Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIl--Et~~L~~~e~~~a~~ia~~aGadfvK--  183 (251)
T d1o0ya_         108 EAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVII--ETCYLDTEEKIAACVISKLAGAHFVK--  183 (251)
T ss_dssp             HHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEEC--CGGGCCHHHHHHHHHHHHHTTCSEEE--
T ss_pred             HHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeee--cccccCcHHHHHHHHHHHHhCcceee--
Confidence            35677888999888774321      12225566666654  44444444  332   2222222221  26899884  


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS  131 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS  131 (157)
                       .-.||+...-   ..+.++.+++. .+++.|=+.|||+ .+++.+++++|+|-+  |+
T Consensus       184 -TSTGf~~~ga---t~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~aGa~ri--Gt  236 (251)
T d1o0ya_         184 -TSTGFGTGGA---TAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRI--GT  236 (251)
T ss_dssp             -CCCSSSSCCC---CHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEE--EE
T ss_pred             -ccCCCCCCCc---CHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHHHHhhHHh--CC
Confidence             3456654333   34444555543 3568899999999 799999999999976  64

>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein SP1609
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.01  E-value=2.5  Score=30.61  Aligned_cols=117  Identities=15%  Similarity=0.274  Sum_probs=66.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccC---------CcchHHHHHHHHHHcCCceEEEecCCCCHH--------hHHhhHhcCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEI---------SKDNWQELVQRIKSKGMRPGVALKPGTSVE--------EVYPLVEGANPV   68 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~---------~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~--------~~~~~~~~~~~~   68 (157)
                      ...++.+.+.|||.+..|.-.         .+.+..+.++.+-++|+-+   ..++|+++        .+.+.+    +.
T Consensus        47 ~~vi~~Ai~~~adlIItHHp~~f~~~~~~~~~~~~~~~~~~lik~~I~v---y~~Ht~lD~~~~G~n~~la~~L----gl  119 (265)
T d2fywa1          47 EETVAEAIEKGVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAV---YVSHTNIDIVENGLNDWFCQML----GI  119 (265)
T ss_dssp             HHHHHHHHHTTCSEEEESSCSCCSCCCCCCTTSHHHHHHHHHHHTTCEE---EECSHHHHHSTTSHHHHHHHHH----TC
T ss_pred             HHHHHHHHHcCCCEEEecCCcceeccccccCCChHHHHHHHHHhCCCeE---EEeccchhhccCcHHHHHHHHh----CC
Confidence            356889999999999999321         1223367788888888753   34466653        344444    22


Q ss_pred             CeEE-EEeeeC--CCC--Ccccchh-HHHHHHHHHhhC--C------------C---CcEEEEcCCCHhhHHHHHHcCCC
Q 031554           69 EMVL-VMTVEP--GFG--GQKFMPE-MMDKVRSLRNRY--P------------S---LDIEVDGGLGPSTIAEAASAGAN  125 (157)
Q Consensus        69 d~vl-~m~v~p--G~~--gq~~~~~-~~~ki~~l~~~~--~------------~---~~I~vdGGI~~~~i~~~~~~Gad  125 (157)
                      ..+- +....|  |++  |. ..+. ..+...++++..  +            +   .+|++-+|-...-+.+..+.|||
T Consensus       120 ~~~~~~~~~~~~~g~g~ig~-~~~~t~~el~~~ik~~l~~~~vr~~~~~~~~~~~~i~~Vai~~GsG~~~i~~a~~~g~D  198 (265)
T d2fywa1         120 EETTYLQETGPERGIGRIGN-IQPQTFWELAQQVKQVFDLDSLRMVHYQEDDLQKPISRVAICGGSGQSFYKDALAKGAD  198 (265)
T ss_dssp             EEEEEEEEEETTEEEEEEEE-EEEEEHHHHHHHHHHHTTCSCCEEECSCTTGGGSEEEEEEEESSSCGGGHHHHHHTTCS
T ss_pred             cccccccccccccceeEEec-cccccHHHHHHHHHHhcCCCceEEEeccCCCcCCcccEEEEECCCchhhhhhHhhcCCC
Confidence            2222 111122  211  11 1111 122233333321  1            1   24778888888888898999999


Q ss_pred             EEEEc
Q 031554          126 CIVAG  130 (157)
Q Consensus       126 ~vV~G  130 (157)
                      .+|.|
T Consensus       199 ~~ITG  203 (265)
T d2fywa1         199 VYITG  203 (265)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99999

>d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.99  E-value=1.7  Score=30.62  Aligned_cols=115  Identities=14%  Similarity=0.109  Sum_probs=72.3

Q ss_pred             ChHHHH---HHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            4 NPLDYV---EPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         4 ~p~~~i---~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      +|+.++   +.+.+.|.+.+=+......+  .+.++++|+.  +....+..|-..+.+...++..+   .++      .+
T Consensus        16 ~~e~~~~~~~~~~~~G~~~~KiKvg~~~D--~~~v~~ir~~~~d~~l~vD~n~~~~~~~a~~~~~l---~~~------~~   84 (243)
T d1r0ma1          16 DEQATVDLVRRHVEQGYRRIKLKIKPGWD--VQPVRATREAFPDIRLTVDANSAYTLADAGRLRQL---DEY------DL   84 (243)
T ss_dssp             SHHHHHHHHHHHHHTTCSCEEEECBTTBS--HHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHTT---GGG------CC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEcCcchh--HHHHHHHHHhccCceEEEeccccCchHHHHHhhhh---hhc------cc
Confidence            454444   45566799999988754333  4677788884  55556666666666555555421   221      12


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG  130 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G  130 (157)
                      .+-.|++.+..++..+++++.. +++|++|-.+. ...+.++.+.| +|++..-
T Consensus        85 ~~iEeP~~~~d~~~~~~l~~~~-~ipia~gE~~~~~~~~~~~i~~~~~d~v~~d  137 (243)
T d1r0ma1          85 TYIEQPLAWDDLVDHAELARRI-RTPLCLDESVASASDARKALALGAGGVINLK  137 (243)
T ss_dssp             SCEECCSCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHHTSCSEEEEC
T ss_pred             hhhhhhccccchHHHHHHhhcC-Ccccccccchhhhhhhhhhhhcccccceecc
Confidence            2235556666667777777764 68898888776 67777776655 7877654

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=89.97  E-value=0.97  Score=32.21  Aligned_cols=84  Identities=18%  Similarity=0.243  Sum_probs=55.1

Q ss_pred             HHHH-HHcCCceEEEec-CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC
Q 031554           35 VQRI-KSKGMRPGVALK-PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG  112 (157)
Q Consensus        35 i~~i-r~~g~~~gl~l~-~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~  112 (157)
                      ++.+ ++..+-+.+... +++-++..+.+.+  .++..+-+--.         .|..++-|+.+++.+|++.|.+..=.+
T Consensus        10 i~~~l~~~~iipvl~~~~~~~a~~~~~al~~--~Gi~~iEitl~---------~p~a~~~i~~l~~~~p~~~vGaGTV~~   78 (216)
T d1mxsa_          10 IDAICEKARILPVITIAREEDILPLADALAA--GGIRTLEVTLR---------SQHGLKAIQVLREQRPELCVGAGTVLD   78 (216)
T ss_dssp             HHHHHHHHSEEEEECCSCGGGHHHHHHHHHH--TTCCEEEEESS---------STHHHHHHHHHHHHCTTSEEEEECCCS
T ss_pred             HHHHHHhCCEEEEEECCCHHHHHHHHHHHHH--CCCCEEEEeCC---------ChhHHHHHHHHHHhCCCcceeeeeeec
Confidence            4443 444544444332 2222333444443  56777654211         246788899999998999888888888


Q ss_pred             HhhHHHHHHcCCCEEEE
Q 031554          113 PSTIAEAASAGANCIVA  129 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV~  129 (157)
                      .+++.++.++||+.+|.
T Consensus        79 ~~~~~~a~~aGa~Fivs   95 (216)
T d1mxsa_          79 RSMFAAVEAAGAQFVVT   95 (216)
T ss_dssp             HHHHHHHHHHTCSSEEC
T ss_pred             HHHHHHHHhCCCCEEEC
Confidence            99999999999998764

>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Nicotinate-nucleotide pyrophosphorylase PF1904
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.35  E-value=0.38  Score=35.61  Aligned_cols=68  Identities=24%  Similarity=0.297  Sum_probs=45.0

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh-h-CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN-R-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP  137 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~-~-~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~  137 (157)
                      ..++.|-+-+..|-.+.   .....+++++.-. . ++++.|.+-|||+++++.++.+ .+|.|=+|+.+...+
T Consensus       117 ~~~~gvRlDSg~p~~gd---l~~l~~~~r~~ld~~G~~~v~IiaSgglde~~I~~l~~-~iD~fGvGt~l~t~~  186 (279)
T d2i14a1         117 KKLFAVRLDTPSSRRGN---FRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVD-VVDAFGVGGAIASAK  186 (279)
T ss_dssp             GGCCEEEECCCTTTCSC---HHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGG-GCSEEEECHHHHTCC
T ss_pred             hhhccccccccCcchhh---HHHHHHHHHHHhhhcCCCceEEEEeCCCCHHHHHHHHh-cccEeccccccccCC
Confidence            35667766555442211   2233334443322 2 3679999999999999999875 599999999887543

>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FAD-linked oxidoreductase
family: Methylenetetrahydrofolate reductase
domain: Methylenetetrahydrofolate reductase
species: Escherichia coli [TaxId: 562]

Probab=89.23  E-value=2.9  Score=30.35  Aligned_cols=127  Identities=16%  Similarity=0.183  Sum_probs=77.0

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcch---HHHHHHHHHHc-CCceEEEecC-CCCHHhHHhhHh-c-CCCCCeEEEEeeeCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDN---WQELVQRIKSK-GMRPGVALKP-GTSVEEVYPLVE-G-ANPVEMVLVMTVEPG   79 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~---~~~~i~~ir~~-g~~~gl~l~~-~t~~~~~~~~~~-~-~~~~d~vl~m~v~pG   79 (157)
                      ..++.+.+.++|+|+|-..+....   ...+.+.+++. |..+..=+.. +.....++..+. . ..+++-|++++-+|-
T Consensus        23 ~~~~~L~~~~p~~vsVT~~aggs~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~l~~~~~~GI~niL~l~GD~~  102 (275)
T d1b5ta_          23 NSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLP  102 (275)
T ss_dssp             HHHHHHHTTCCSEEEECCCSSHHHHHHHHHHHHHHHHHHCCCEEEEECSTTCCHHHHHHHHHHHHHTTCCEEEECCCCCC
T ss_pred             HHHHHHhcCCCCEEEeccCCCCcchhhHHHHHHHHHhhcCCCceeeeccccccHhHHHHHHHHHHHHhhCeEEEecCCCC
Confidence            457788888999999987665322   14466777765 9998876643 333334444332 1 268999999987753


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--------HhhHHHH---HHcCCCEEEEcccccC
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--------PSTIAEA---ASAGANCIVAGSSVFG  135 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--------~~~i~~~---~~~Gad~vV~GSai~~  135 (157)
                      ..+..+.....+-++-++.. ..+.+.++|.--        ...+..+   .++||+. ++-=.+|.
T Consensus       103 ~~~~~~~~~a~dlv~li~~~-~~~~igva~~Peghp~~~~~~~~~~~lk~K~~aGA~f-iiTQ~~fD  167 (275)
T d1b5ta_         103 PGSGKPEMYASDLVTLLKEV-ADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANR-AITQFFFD  167 (275)
T ss_dssp             SSSCCCCCCHHHHHHHHHHH-CCCEEEEEECTTCCTTCSCHHHHHHHHHHHHHHTCCE-EEEEECSC
T ss_pred             CCCCCCcccHHHHHHHHHHH-HhcCCceeecCCCCccchhHHHHHHHHHHHHHhhcCe-eeeeeeec
Confidence            33333333456666666665 356777777632        1223333   4689995 44445664

>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Putative dehydratase protein STM2273
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.11  E-value=1.5  Score=31.88  Aligned_cols=115  Identities=10%  Similarity=0.095  Sum_probs=70.4

Q ss_pred             cChHHHHH---HHHhCCCCEEEEcccCC-------------------------cchHHHHHHHHHHc-CCce--EEEecC
Q 031554            3 TNPLDYVE---PLGKAGASGFTFHVEIS-------------------------KDNWQELVQRIKSK-GMRP--GVALKP   51 (157)
Q Consensus         3 ~~p~~~i~---~~~~~gad~v~vh~e~~-------------------------~~~~~~~i~~ir~~-g~~~--gl~l~~   51 (157)
                      .+|+.+++   .+.+.|.+.+=+|.-..                         ... .+.++++|+. |-.+  .+..|-
T Consensus        25 ~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-i~~v~aiRe~vG~~~~l~vDan~  103 (278)
T d2gl5a1          25 VTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMG-EARIAAMREAMGDDADIIVEIHS  103 (278)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHH-HHHHHHHHHHHCSSSEEEEECTT
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHH-HHHHHHHHHHhccccceeecccc
Confidence            46776665   55788999999974221                         112 3456777774 5444  445566


Q ss_pred             CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCC-CEE
Q 031554           52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA-NCI  127 (157)
Q Consensus        52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Ga-d~v  127 (157)
                      ..+.+...++.+.+...+...+        .|++.+..++-.++|++.. +++|+.+-.+. .+.+.++++.|+ |++
T Consensus       104 ~~~~~~Ai~~~~~L~~~~l~wi--------EePi~~~d~~~~~~L~~~~-~ipIa~gE~~~~~~~~~~~i~~~a~di~  172 (278)
T d2gl5a1         104 LLGTNSAIQFAKAIEKYRIFLY--------EEPIHPLNSDNMQKVSRST-TIPIATGERSYTRWGYRELLEKQSIAVA  172 (278)
T ss_dssp             CSCHHHHHHHHHHHGGGCEEEE--------ECSSCSSCHHHHHHHHHHC-SSCEEECTTCCTTHHHHHHHHTTCCSEE
T ss_pred             cccchhhHHHHHHhccccccee--------cccccccchhhhhhhcccc-ccceecccccCChHHHhhhhccccceeE
Confidence            6666665555531134444332        3445555566777777764 68888877766 588888877665 666

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=88.71  E-value=2.6  Score=29.08  Aligned_cols=107  Identities=19%  Similarity=0.216  Sum_probs=61.0

Q ss_pred             hHHHHHHHHhCCCCEEEEcc-cCCcchHHHHH----HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            5 PLDYVEPLGKAGASGFTFHV-EISKDNWQELV----QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         5 p~~~i~~~~~~gad~v~vh~-e~~~~~~~~~i----~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      ..+.++.+.+.|+++|.+-. ...+....+..    +.++++|..  +.+  ++.++...++     ..|.|=+     |
T Consensus        19 ~~~~v~~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~--lii--nd~~~lA~~~-----~adGvHl-----~   84 (206)
T d1xi3a_          19 EVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDAL--FFV--DDRVDVALAV-----DADGVQL-----G   84 (206)
T ss_dssp             HHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCE--EEE--ESCHHHHHHH-----TCSEEEE-----C
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe--EEe--chhHHHHHhc-----cCceEee-----c
Confidence            35778999999999988853 22222112333    334445544  344  4677766654     5787743     3


Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554           80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF  134 (157)
Q Consensus        80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~  134 (157)
                         |...+  .   ...+...++..+..-. -+.+.+......|+|.+.+|.-..
T Consensus        85 ---~~~~~--~---~~~~~~~~~~iig~s~-h~~~e~~~a~~~g~DYi~~gpvf~  130 (206)
T d1xi3a_          85 ---PEDMP--I---EVAKEIAPNLIIGASV-YSLEEALEAEKKGADYLGAGSVFP  130 (206)
T ss_dssp             ---TTSCC--H---HHHHHHCTTSEEEEEE-SSHHHHHHHHHHTCSEEEEECSSC
T ss_pred             ---ccccc--H---hhhhhccccccccccc-CCHHHHHHHHhcCCCEEEeccccc
Confidence               22222  1   2223344455443332 367777777889999998887443

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.60  E-value=1.8  Score=27.23  Aligned_cols=73  Identities=12%  Similarity=0.215  Sum_probs=46.7

Q ss_pred             CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-Cc-EEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LD-IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~-I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      ..+|.|++--..|+.+|       ++-++++|+..+. .+ |.+-+.-+.+...+..++||+.++.     +.-++.+..
T Consensus        46 ~~~dlillD~~mP~~dG-------~e~~~~ir~~~~~~~~ii~~t~~~~~~~~~~a~~~Ga~~~l~-----KP~~~~~L~  113 (123)
T d1dz3a_          46 KRPDILLLDIIMPHLDG-------LAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFIL-----KPFDMENLA  113 (123)
T ss_dssp             HCCSEEEEESCCSSSCH-------HHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEE-----CSSCCTTHH
T ss_pred             cCCCEEEEcCCCCCCCH-------HHHHHHHHhcCCCCCeEEEEECcCCHHHHHHHHHCCCCEEEE-----CCCCHHHHH
Confidence            46898887666787665       4455666665433 34 4456666788888999999998854     333444444


Q ss_pred             HHHHHHH
Q 031554          144 SLMRKSV  150 (157)
Q Consensus       144 ~~l~~~~  150 (157)
                      ..+++.+
T Consensus       114 ~~i~~v~  120 (123)
T d1dz3a_         114 HHIRQVY  120 (123)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555444

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.67  E-value=1.5  Score=32.30  Aligned_cols=100  Identities=13%  Similarity=0.071  Sum_probs=61.9

Q ss_pred             HHHHHHHHhCCCCEEEEcccC-------------------------------CcchHHHHHHHHHHcCCceEEEecCCCC
Q 031554            6 LDYVEPLGKAGASGFTFHVEI-------------------------------SKDNWQELVQRIKSKGMRPGVALKPGTS   54 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~-------------------------------~~~~~~~~i~~ir~~g~~~gl~l~~~t~   54 (157)
                      .+.++.+.++|||.|-|..-.                               +.+.+.++.+++++.|+.+..++   .+
T Consensus        34 k~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~els~~~~~~l~~~~k~~gi~~~~s~---fd  110 (295)
T d1vlia2          34 FALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLSTV---CD  110 (295)
T ss_dssp             HHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEECBC---CS
T ss_pred             HHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccccccccchheecCHHHhhhHHHHhhhcccceeeec---cc
Confidence            467889999999999998422                               11233678888999998766555   44


Q ss_pred             HHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHH
Q 031554           55 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA  120 (157)
Q Consensus        55 ~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~  120 (157)
                      .+.+..+.+  -++|.+=+-+.+      .   ..++-|+++.+.. ...|.--||.+.+.+..+.
T Consensus       111 ~~s~~~l~~--l~~~~iKIaS~d------~---~n~~Li~~i~k~~-kpviistG~~~~~ei~~~~  164 (295)
T d1vlia2         111 EGSADLLQS--TSPSAFKIASYE------I---NHLPLLKYVARLN-RPMIFSTAGAEISDVHEAW  164 (295)
T ss_dssp             HHHHHHHHT--TCCSCEEECGGG------T---TCHHHHHHHHTTC-SCEEEECTTCCHHHHHHHH
T ss_pred             ceeeeeecc--cCcceeEecccc------c---ccHHHHHHHHhcC-CchheechhhhhhhHHHHH
Confidence            555554443  256776553221      1   2244566666654 2235567888877776543

>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.28  E-value=3.1  Score=29.30  Aligned_cols=96  Identities=16%  Similarity=0.180  Sum_probs=60.4

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee---eCCCCCcccchhHHHHHHHHHh-hCCCCcEEE
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV---EPGFGGQKFMPEMMDKVRSLRN-RYPSLDIEV  107 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v---~pG~~gq~~~~~~~~ki~~l~~-~~~~~~I~v  107 (157)
                      ...++.+++.|+++=+... -+..+.+....   .+++||...--   +-|.++.    ..+..+.++.+ ..++.+|.+
T Consensus        93 ~~ai~~L~~~Gi~~n~Tav-fs~~Qa~~Aa~---aga~yispy~gR~~d~g~d~~----~~i~~~~~~~~~~~~~tkil~  164 (218)
T d1vpxa_          93 IKAVKTLSAEGIKTNVTLV-FSPAQAILAAK---AGATYVSPFVGRMDDLSNDGM----RMLGEIVEIYNNYGFETEIIA  164 (218)
T ss_dssp             HHHHHHHHHTTCCEEEEEE-CSHHHHHHHHH---HTCSEEEEBHHHHHHTTSCHH----HHHHHHHHHHHHHTCSCEEEE
T ss_pred             hHHHHHHHHcCCceeeEEe-cCHHHHHHHHh---cCCCEEEeeecchhhhcccch----hhHHHHHHHHhhhcccceeee
Confidence            6788888888988877542 23344444444   57888864411   0122211    23334443332 356788877


Q ss_pred             EcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554          108 DGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus       108 dGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      ..=-+.+++.++..+|+|++.+.-.+++
T Consensus       165 AS~r~~~~v~~a~~~G~d~iTip~~v~~  192 (218)
T d1vpxa_         165 ASIRHPMHVVEAALMGVDIVTMPFAVLE  192 (218)
T ss_dssp             BSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             eccCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence            5555589999999999999999977664

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=86.48  E-value=2.1  Score=27.20  Aligned_cols=99  Identities=13%  Similarity=0.199  Sum_probs=59.9

Q ss_pred             HHHHHcCCceEEEecCCCC-HHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCc-EEEEcCC
Q 031554           36 QRIKSKGMRPGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLD-IEVDGGL  111 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~~t~-~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~-I~vdGGI  111 (157)
                      +.+.+.|...   +...++ .+.++.+. - ...|.|++-.-.|+.+|       ++-++++|+.  .++.+ |.+-|.-
T Consensus        24 ~~L~~~g~~~---v~~a~~~~~al~~l~-~-~~~dlii~D~~mP~~~G-------~el~~~lr~~~~~~~~pii~lt~~~   91 (129)
T d1p6qa_          24 DALQQLGFKQ---ITAAGDGEQGMKIMA-Q-NPHHLVISDFNMPKMDG-------LGLLQAVRANPATKKAAFIILTAQG   91 (129)
T ss_dssp             HHHHTTTCSC---EECCSSHHHHHHHHH-T-SCCSEEEECSSSCSSCH-------HHHHHHHTTCTTSTTCEEEECCSCC
T ss_pred             HHHHHCCCeE---EEEECCHHHHHHHHH-h-CCCCeEEeeeecCCCCh-------HHHHHHHHhCcccCCCeEEEEEecC
Confidence            4455567652   222333 34444443 2 45788776555576554       5667777764  34565 4456666


Q ss_pred             CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      +.+...++.++|+|.+     +.+.=++.+....+++.+.
T Consensus        92 ~~~~~~~a~~~G~~~~-----l~KP~~~~~L~~~i~~vl~  126 (129)
T d1p6qa_          92 DRALVQKAAALGANNV-----LAKPFTIEKMKAAIEAVFG  126 (129)
T ss_dssp             CHHHHHHHHHHTCSCE-----ECCCSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHH
Confidence            7888999999999865     4554466666666666553

>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein YbgI
species: Escherichia coli [TaxId: 562]

Probab=86.33  E-value=2.1  Score=30.57  Aligned_cols=118  Identities=14%  Similarity=0.114  Sum_probs=63.7

Q ss_pred             HHHHHHHhCCCCEEEEcccCC--------cchHHHHHHHHHHcCCceEEEecCCCCHHhH------HhhHhcCCCCCeEE
Q 031554            7 DYVEPLGKAGASGFTFHVEIS--------KDNWQELVQRIKSKGMRPGVALKPGTSVEEV------YPLVEGANPVEMVL   72 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~--------~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~------~~~~~~~~~~d~vl   72 (157)
                      ..++.+.+.|+|.+..|--..        ..+....++.+.++++.+   +..+|+....      ..+.+   ...+-.
T Consensus        47 ~vi~~A~~~g~dlIItHHP~~f~~~~~~~~~~~~~~i~~lik~~I~v---y~~Htn~D~~~~~G~~~~La~---~lg~~~  120 (247)
T d1nmpa_          47 ALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINL---YGWHLPLDAHPELGNNAQLAA---LLGITV  120 (247)
T ss_dssp             HHHHHHHHTTCSEEEEEECSCCTTCCCCCCHHHHHHHHHHHHTTCEE---EECCHHHHHCTTTSHHHHHHH---HTTEEE
T ss_pred             HHHHHHHHCCCCEEEECCccccCCCCccccCcchHHHHHHHHCCcce---EEccCCcccccccchHHHHHH---Hhhhcc
Confidence            467899999999999982111        112145667777777532   2334544321      11221   111111


Q ss_pred             EEeeeCCCC--Cc---ccchhHHHHHHHHHhhC-------CC---CcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554           73 VMTVEPGFG--GQ---KFMPEMMDKVRSLRNRY-------PS---LDIEVDGGLGPSTIAEAASAGANCIVAG  130 (157)
Q Consensus        73 ~m~v~pG~~--gq---~~~~~~~~ki~~l~~~~-------~~---~~I~vdGGI~~~~i~~~~~~Gad~vV~G  130 (157)
                      .-...|...  +.   ....+..+++++.-...       ++   .+|++-+|-..+-+.+..+.|||.+|.|
T Consensus       121 ~~~~~~~~~~~~l~~~~~~~el~~~vk~~l~~~~~~~~~~~~~~v~~Vai~~GsG~s~~~~a~~~gaD~~ITG  193 (247)
T d1nmpa_         121 MGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITG  193 (247)
T ss_dssp             EEEEETTEEEEEEEEEECHHHHHHHHHHHHTSCCEEECTTCCSSEEEEEECSSSCGGGHHHHHHHCCSEEEES
T ss_pred             ccccccccccccccCccCHHHHHHHHHHHhCCCceEecCCCCceeeEEEEEeCCChHHHHHHHhcCCCEEEec
Confidence            111122111  11   01123344555443211       11   3588999988899999999999999999

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.18  E-value=0.68  Score=31.23  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=54.9

Q ss_pred             cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEE-EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE
Q 031554           28 KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVL-VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE  106 (157)
Q Consensus        28 ~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl-~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~  106 (157)
                      +.. .++++.++++|.+++++-|.......+-+.+   +.-+++- +++..+.... +-.++.+..+-+--...|+--+.
T Consensus        85 pgv-~~~L~~L~~~g~~~~v~Sn~~~~~~~~l~~~---gl~~~f~~i~~s~~~~~~-Kp~~~~~~~~~~~~~~~p~~~l~  159 (204)
T d2go7a1          85 PGA-REVLAWADESGIQQFIYTHKGNNAFTILKDL---GVESYFTEILTSQSGFVR-KPSPEAATYLLDKYQLNSDNTYY  159 (204)
T ss_dssp             TTH-HHHHHHHHHTTCEEEEECSSCTHHHHHHHHH---TCGGGEEEEECGGGCCCC-TTSSHHHHHHHHHHTCCGGGEEE
T ss_pred             chH-Hhhhhcccccccchhhhcccchhhhhhhhhc---cccccccccccccccccc-chhHHHHHHHHHHhCCCCceEEE
Confidence            344 8999999999999998876433322222222   2333322 2233433222 22455666544333333443355


Q ss_pred             EEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554          107 VDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus       107 vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      |+=+  ..++.....+|...+-+.+.
T Consensus       160 VgD~--~~Di~~A~~~G~~~i~v~~~  183 (204)
T d2go7a1         160 IGDR--TLDVEFAQNSGIQSINFLES  183 (204)
T ss_dssp             EESS--HHHHHHHHHHTCEEEESSCC
T ss_pred             EeCC--HHHHHHHHHcCCeEEEEcCC
Confidence            5444  56888888999998766544

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=85.82  E-value=0.9  Score=31.06  Aligned_cols=73  Identities=10%  Similarity=0.014  Sum_probs=42.2

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHcCCc-eEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSKGMR-PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG   79 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~g~~-~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG   79 (157)
                      ..|+.+++.+.+.++|.|.+-.-...  ..+.++++.+++.|.. +-+.+.-.-|-+....+.+  .++|-|.    .||
T Consensus        75 ~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~~g~~~v~VivGG~ip~~d~~~l~~--~Gv~~iF----~pg  148 (168)
T d7reqa2          75 QTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRK--DGAVEIY----TPG  148 (168)
T ss_dssp             BCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHH--HTEEEEE----CTT
T ss_pred             CcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHh--CCCCEEE----CcC
Confidence            35788888888889998887733222  2336788888888743 4444432223333333332  2566542    366


Q ss_pred             CC
Q 031554           80 FG   81 (157)
Q Consensus        80 ~~   81 (157)
                      +.
T Consensus       149 t~  150 (168)
T d7reqa2         149 TV  150 (168)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.28  E-value=6.2  Score=29.90  Aligned_cols=113  Identities=18%  Similarity=0.289  Sum_probs=66.9

Q ss_pred             cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc------------CCceEEEecCCCCHHhHHhhHhcCCCCCe
Q 031554            3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK------------GMRPGVALKPGTSVEEVYPLVEGANPVEM   70 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~------------g~~~gl~l~~~t~~~~~~~~~~~~~~~d~   70 (157)
                      .+|+ ....+.+.|. .-.+|-....+...+.++..+..            ...+++.++|. ..+.+..+++  .++|+
T Consensus        57 ~~~~-mA~~la~~Gg-lgvlhr~~~~e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~-~~~r~~~l~~--aGvd~  131 (368)
T d2cu0a1          57 TEWE-MAVAMAREGG-LGVIHRNMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPF-DIKRAIELDK--AGVDV  131 (368)
T ss_dssp             CSHH-HHHHHHHTTC-EEEECSSSCHHHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEECTT-CHHHHHHHHH--TTCSE
T ss_pred             CCHH-HHHHHHHCCC-eeEecccCCHHHHHHHHHhhhhhhhccccccccCccEEEEeccChH-HHHHHHHHHH--cCCCE
Confidence            3455 3445666664 44556443221112333333321            34567777764 4666777765  68999


Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG  130 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G  130 (157)
                      |++-..+ |.     .....+.++++++.. +.++.+ |++. .+.+..+  .|||++=+|
T Consensus       132 ivID~A~-Gh-----~~~~i~~lK~ir~~~-~~~vIa-GNVaT~e~~~~l--~gaD~VkVG  182 (368)
T d2cu0a1         132 IVVDTAH-AH-----NLKAIKSMKEMRQKV-DADFIV-GNIANPKAVDDL--TFADAVKVG  182 (368)
T ss_dssp             EEEECSC-CC-----CHHHHHHHHHHHHTC-CSEEEE-EEECCHHHHTTC--TTSSEEEEC
T ss_pred             EEecCcc-cc-----hhhhhhhhhhhhhhc-ccceee-ccccCHHHHHhh--hcCcceeec
Confidence            8765333 32     335677788888876 467766 6665 6666543  799999988

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=85.26  E-value=2.1  Score=30.24  Aligned_cols=107  Identities=17%  Similarity=0.282  Sum_probs=61.8

Q ss_pred             cChHHHHHHHHhCCCCEEEEcc---c-CCcchH----HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554            3 TNPLDYVEPLGKAGASGFTFHV---E-ISKDNW----QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         3 ~~p~~~i~~~~~~gad~v~vh~---e-~~~~~~----~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      .++.++++.+.+.|+++|-+=.   + ..++..    .++.+.++++|..  +.||  +.++.+.++     +.|.|-+ 
T Consensus        30 ~~~~~~v~~al~~Gv~~iqlR~K~~~~~~~~~~~~~a~~l~~lc~~~~~~--liIn--d~~~lA~~~-----~adGvHl-   99 (226)
T d2tpsa_          30 ADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVP--FIVN--DDVELALNL-----KADGIHI-   99 (226)
T ss_dssp             SCHHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCC--EEEE--SCHHHHHHH-----TCSEEEE-
T ss_pred             cCHHHHHHHHHHCCCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHhCCe--EEEc--CCHHHHhhc-----cCCEEEe-
Confidence            3678899999999999987742   1 111111    2233345556765  4454  666655554     5787633 


Q ss_pred             eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                          |...   .+     +.++|+..+...+.+- --|.+.+....+.|+|.+.+|..
T Consensus       100 ----~~~d---~~-----~~~~r~~~~~~iig~S-~h~~~e~~~a~~~g~DYi~~gpv  144 (226)
T d2tpsa_         100 ----GQED---AN-----AKEVRAAIGDMILGVS-AHTMSEVKQAEEDGADYVGLGPI  144 (226)
T ss_dssp             ----CTTS---SC-----HHHHHHHHTTSEEEEE-ECSHHHHHHHHHHTCSEEEECCS
T ss_pred             ----cccc---ch-----hhhhhhcccceeeeee-ccchHHHHHHHhCcCCeEEEecc
Confidence                3222   11     2333443333322222 23578888888899999988874

>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: GlpP-like
family: GlpP-like
domain: Glycerol uptake operon antiterminator-related protein TM1436
species: Thermotoga maritima [TaxId: 2336]

Probab=85.25  E-value=4.1  Score=27.80  Aligned_cols=81  Identities=22%  Similarity=0.204  Sum_probs=48.0

Q ss_pred             HHHHHHHHHcCCceEE--EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           32 QELVQRIKSKGMRPGV--ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl--~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                      ...++.+|+.|+....  ++-=+.+++...+.++. ..+|+|-+|   ||.-    .|    ++  +++. .+.+|.+.|
T Consensus        80 ~~~i~~Ak~~Gl~tIqR~FliDS~al~~~~~~i~~-~~PD~IEiL---PG~i----~p----~i--i~~~-~~~piIAGG  144 (172)
T d1vkfa_          80 PKNYVVAKKNGIPAVLRFFALDSKAVERGIEQIET-LGVDVVEVL---PGAV----AP----KV--ARKI-PGRTVIAAG  144 (172)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCSHHHHHHHHHHHHH-HTCSEEEEE---SGGG----HH----HH--HTTS-TTSEEEEES
T ss_pred             HHHHHHHHHcCCeEEEEEEeeehHHHHHHHHHHhh-cCCCEEEEC---Cchh----hH----HH--HHHh-cCCCEEeeC
Confidence            3677778888877654  23222344444444443 589999998   8621    12    22  2222 356776666


Q ss_pred             CCC-HhhHHHHHHcCCCEEE
Q 031554          110 GLG-PSTIAEAASAGANCIV  128 (157)
Q Consensus       110 GI~-~~~i~~~~~~Gad~vV  128 (157)
                      =|+ .+++....++| ..+.
T Consensus       145 LI~~~edv~~al~~g-~aVS  163 (172)
T d1vkfa_         145 LVETEEEAREILKHV-SAIS  163 (172)
T ss_dssp             CCCSHHHHHHHTTTS-SEEE
T ss_pred             CcCCHHHHHHHHhcC-eEEE
Confidence            676 68898888655 4543

>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.14  E-value=1.4  Score=33.49  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=41.6

Q ss_pred             EEeeeCCCCCcccchhHHHHHHHH-Hhh-CCCCcEEEEcCCCHhhHHHHHHcC--CCEEEEcccccCC
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRSL-RNR-YPSLDIEVDGGLGPSTIAEAASAG--ANCIVAGSSVFGA  136 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~l-~~~-~~~~~I~vdGGI~~~~i~~~~~~G--ad~vV~GSai~~~  136 (157)
                      +.++.|..|.   ......++++. .+. ++++.|.+-||++++.+.++.+.|  +|+|=+|+.+.+.
T Consensus       118 ~~gvR~DSGd---~~~~~~~vr~~ld~~g~~~v~Ii~Sdglde~~I~~l~~~~~~id~FGvGt~L~~~  182 (345)
T d2f7fa1         118 FLGVRIDSGD---MAYISKRVREQLDEAGFTEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLITA  182 (345)
T ss_dssp             EEEEEECSSC---HHHHHHHHHHHHHHTTCTTCEEEECSSCCHHHHHHHHHTTCCCCEEEECHHHHTT
T ss_pred             ccCCCCCCCc---hHHHHHHHHHHhccccCCceEEEEeCCCCHHHHHHHHHcCCceeEeecCcceeec
Confidence            3456665443   22333343332 233 367899999999999999998776  4899999998754

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.75  E-value=4.4  Score=27.72  Aligned_cols=111  Identities=15%  Similarity=0.144  Sum_probs=67.8

Q ss_pred             HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEec----CC------CCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554            9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALK----PG------TSVEEVYPLVEGANPVEMVLVMTVEP   78 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~----~~------t~~~~~~~~~~~~~~~d~vl~m~v~p   78 (157)
                      .+.+.+.|+..+.+..       .+.++.+|+.-..+.+...    +.      ...+....+..  .++|.+.+.....
T Consensus        39 A~a~~~~Ga~~i~~~~-------~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gad~i~~~~~~~  109 (230)
T d1yxya1          39 AKAAQEAGAVGIRANS-------VRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAA--LNIAVIAMDCTKR  109 (230)
T ss_dssp             HHHHHHHTCSEEEEES-------HHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHT--TTCSEEEEECCSS
T ss_pred             HHHHHHCCCeEEEecC-------hhhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHh--cCCCEEEEecccc
Confidence            4566777999998842       3566678886555544321    00      11233333332  5789888765442


Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      -..   ......+.+++++...+...+.. +--|.+.+....++|+|+++++..
T Consensus       110 ~~~---~~~~~~~~~~~~~~~~~~~~v~~-~v~t~~~a~~a~~~Gad~i~~~~~  159 (230)
T d1yxya1         110 DRH---DGLDIASFIRQVKEKYPNQLLMA-DISTFDEGLVAHQAGIDFVGTTLS  159 (230)
T ss_dssp             CCT---TCCCHHHHHHHHHHHCTTCEEEE-ECSSHHHHHHHHHTTCSEEECTTT
T ss_pred             ccc---chhhHHHHHHHHHhcCCCceEec-CCCCHHHHHHHHhcCCCEEEeecc
Confidence            111   12245667777777765554433 455689999999999999988753

>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DR1281-like
domain: Hypothetical protein MPN349
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=84.53  E-value=0.17  Score=37.86  Aligned_cols=70  Identities=20%  Similarity=0.266  Sum_probs=44.6

Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEE------EEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIE------VDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~------vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      ||+++=--|..|..   ...+.+.++|+.+ +++-|+      =..|||++...++.++|+|++..|--+|...+....+
T Consensus         7 ILfiGDIvG~~GR~---~v~~~Lp~Lr~~~~iDfVIaNgENaa~G~Git~k~~~eL~~~GvDvIT~GNH~wd~kei~~~i   83 (281)
T d1t71a_           7 FIFLGDVYGKAGRN---IIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYITMGNHTWFQKLDLAVV   83 (281)
T ss_dssp             EEEECEEBHHHHHH---HHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTCCEEECCTTTTCCGGGHHHH
T ss_pred             EEEEEccCCHHHHH---HHHHHhHHHHHHhCCCEEEECCccCCCCcCCCHHHHHHHHHhCCcEEEcCchhhhchhhHHHH
Confidence            44444333444433   3333466666652 344332      1368999999999999999999999888655544433

>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Capsule biosynthesis protein SiaC, N-terminal domain
species: Neisseria meningitidis [TaxId: 487]

Probab=84.49  E-value=5.6  Score=28.72  Aligned_cols=115  Identities=10%  Similarity=0.092  Sum_probs=73.9

Q ss_pred             HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH--HhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554            8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV--EEVYPLVEGANPVEMVLVMTVEPGFGGQKF   85 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~--~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~   85 (157)
                      -++.+.+.|++.+=++.-...+  ...|+.+.+.+..+-++....+--  +.+..++.- ...+++++.++. .+.. +.
T Consensus       115 s~~~~~~~~~~~~KIaS~d~~n--~~Li~~i~k~~kpiiiStG~s~~~EI~~av~~~~~-~~~~~~llhc~s-~YPt-~~  189 (280)
T d2zdra2         115 AALRLQRMDIPAYKIGSGECNN--YPLIKLVASFGKPIILSTGMNSIESIKKSVEIIRE-AGVPYALLHCTN-IYPT-PY  189 (280)
T ss_dssp             HHHHHHHHTCSCEEECGGGTTC--HHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHH-HTCCEEEEECCC-CSSC-CG
T ss_pred             cccccccccccceeccchhccc--cHhhhhhhhccCceeecccccchhHhhhhhhhhhh-ccccceEEEeec-cCcc-cc
Confidence            3566778899999998554444  589999999998888888755422  223333321 356777766543 2221 22


Q ss_pred             chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554           86 MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCI  127 (157)
Q Consensus        86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~v  127 (157)
                      ....+.++..+++.++.+.|..-.--. .+..-..+..||+++
T Consensus       190 ~~~nL~~i~~lk~~f~~~~iG~SdH~~g~~~~~~Ava~GA~~I  232 (280)
T d2zdra2         190 EDVRLGGMNDLSEAFPDAIIGLSDHTLDNYACLGAVALGGSIL  232 (280)
T ss_dssp             GGCCTTHHHHHHHHCTTSEEEEECCSSSSHHHHHHHHTTCCEE
T ss_pred             ccccccccceeeccccccceeecCcccchhhHHHHHHCCCeEE
Confidence            334677899999988777776544444 344445678999976

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=83.71  E-value=6.1  Score=28.53  Aligned_cols=94  Identities=20%  Similarity=0.281  Sum_probs=66.7

Q ss_pred             HHHHHHHHcCCceEEEecCC----------CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC
Q 031554           33 ELVQRIKSKGMRPGVALKPG----------TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS  102 (157)
Q Consensus        33 ~~i~~ir~~g~~~gl~l~~~----------t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~  102 (157)
                      .+.+++++.|..+.-.+...          +|.+.++.|.+  .+++.+-++|=..-|+|      .++.++++++.. +
T Consensus        36 ~f~~al~~~~~~vIAEiKr~SPS~G~i~~~dp~~~A~~y~~--~GA~aiSVLTe~~~F~G------s~~dl~~v~~~~-~  106 (254)
T d1vc4a_          36 SFKEALLRPGLSVIAEVKRQSPSEGLIREVDPVEAALAYAR--GGARAVSVLTEPHRFGG------SLLDLKRVREAV-D  106 (254)
T ss_dssp             CHHHHHTSSSCEEEEEECSCCTTTCCCCSCCHHHHHHHHHH--TTCSEEEEECCCSSSCC------CHHHHHHHHHHC-C
T ss_pred             cHHHHHhcCCCeEEEEeeecCCCCCccccCCHHHHHHHHHh--cCCceEEEEcCcccccc------cHHHHHHHHHHc-C
Confidence            45566666665444345322          34667777765  68999988875555666      445566666664 4


Q ss_pred             Cc-EEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554          103 LD-IEVDGGLGPSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus       103 ~~-I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      ++ +.=|+=|.+..+.+...+|||.+.+-.+++.
T Consensus       107 iPvLrKDFIid~~QI~ea~~~GADaVLLIaall~  140 (254)
T d1vc4a_         107 LPLLRKDFVVDPFMLEEARAFGASAALLIVALLG  140 (254)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG
T ss_pred             CCcccCCccccHHHHHHHHhccchHHHHHHHHHH
Confidence            44 5678889999999999999999999998875

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.57  E-value=2.5  Score=30.60  Aligned_cols=74  Identities=18%  Similarity=0.171  Sum_probs=53.8

Q ss_pred             CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                      +|.+..+ +.+  .+++.+-++|=+.-|+|      .++.++++++...-.-+.=|+=|.+-.+.+...+|||++.+-.+
T Consensus        64 d~~~~a~-~~~--~gA~aiSVLTd~~~F~G------s~~dl~~v~~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~  134 (247)
T d1a53a_          64 DPIEYSK-FME--RYAVGLSILTEEKYFNG------SYETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLIVK  134 (247)
T ss_dssp             CHHHHHH-HHT--TTCSEEEEECCCTTTCC------CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHHTCSEEEEEGG
T ss_pred             CHHHHHH-HHH--hCCCeEEEecCcccccc------chHHHHHHHhccccceeecccccChHHHHHHHHhhcchhhhhhh
Confidence            3455444 443  67888888866667777      34556666666422335678899999999999999999999988


Q ss_pred             ccC
Q 031554          133 VFG  135 (157)
Q Consensus       133 i~~  135 (157)
                      ++.
T Consensus       135 ~L~  137 (247)
T d1a53a_         135 ILT  137 (247)
T ss_dssp             GSC
T ss_pred             hcc
Confidence            885

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=82.97  E-value=5.5  Score=28.60  Aligned_cols=111  Identities=16%  Similarity=0.117  Sum_probs=57.7

Q ss_pred             HHHHHHHHhCCCCEEEEcccCC----cchHHHHHHHHHH-cCCceEEEecCC-C----CHHhHHhhHhcCCCCCeEEEEe
Q 031554            6 LDYVEPLGKAGASGFTFHVEIS----KDNWQELVQRIKS-KGMRPGVALKPG-T----SVEEVYPLVEGANPVEMVLVMT   75 (157)
Q Consensus         6 ~~~i~~~~~~gad~v~vh~e~~----~~~~~~~i~~ir~-~g~~~gl~l~~~-t----~~~~~~~~~~~~~~~d~vl~m~   75 (157)
                      .++.+.+.++|||.+.+..-..    ++-+.++.+.+.+ .+..+.+-=+|. |    +.+.+.++.   ....++-+  
T Consensus        89 iela~~a~~~Gad~i~~~pP~~~~~s~~~~~~~~~~v~~~~~~pi~iYn~P~~tg~~l~~~~l~~L~---~~~~v~gi--  163 (293)
T d1f74a_          89 VELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELY---KNPKVLGV--  163 (293)
T ss_dssp             HHHHHHHHHHTCSEEECCCCCSSCCCHHHHHHHHHHHHHHHCCCEEEECCSSCSCHHHHHHHHHHHH---TSTTEEEE--
T ss_pred             HHHHHHHHHcCCCEeeccCccccccchHHHHHHHhcccccCCceEEEEeeccceeccccchhhhhhh---hccccccc--
Confidence            3456677788888887663322    1111233333332 344333322343 2    335566666   44444432  


Q ss_pred             eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554           76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS  132 (157)
Q Consensus        76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa  132 (157)
                       .-.       ......+.++++..+++.+.. | - ...+......|+++++.|.+
T Consensus       164 -K~~-------~~~~~~~~~~~~~~~~~~v~~-g-~-~~~~~~~~~~G~~G~i~~~~  209 (293)
T d1f74a_         164 -KFT-------AGDFYLLERLKKAYPNHLIWA-G-F-DEMMLPAASLGVDGAIGSTF  209 (293)
T ss_dssp             -EEC-------CSCHHHHHHHHHHCTTSEEEE-C-C-GGGHHHHHHTTCCEEEESTH
T ss_pred             -ccC-------CCCHHHHHHHhhcCCCeEEEe-C-c-ccccchhhhCCCcccccccc
Confidence             111       012345566666667776543 3 2 34455667899999999964

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

Probab=82.81  E-value=2.4  Score=30.69  Aligned_cols=120  Identities=11%  Similarity=0.103  Sum_probs=69.6

Q ss_pred             HHHHHHhCCCCEEEEcccC------CcchHHHHHHH----HHHcCCceEEEecCC--CCHHhH---HhhHhcCCCCCeEE
Q 031554            8 YVEPLGKAGASGFTFHVEI------SKDNWQELVQR----IKSKGMRPGVALKPG--TSVEEV---YPLVEGANPVEMVL   72 (157)
Q Consensus         8 ~i~~~~~~gad~v~vh~e~------~~~~~~~~i~~----ir~~g~~~gl~l~~~--t~~~~~---~~~~~~~~~~d~vl   72 (157)
                      -++.+.+.|||=+-+-...      ..+.+.+.++.    ++..|..+-+-+...  ++.+.+   .++... .++|+|-
T Consensus        89 E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~-aGadFvK  167 (250)
T d1p1xa_          89 ETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIK-AGADFIK  167 (250)
T ss_dssp             HHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHH-TTCSEEE
T ss_pred             HHHHHHHcCCCeEEEeecchhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHHHHHHH-cCcCeEE
Confidence            4567788899988776321      11122333433    345677665555311  233322   233222 6899984


Q ss_pred             EEeeeCCCCCcccchhHHHHHHH-HHhhC--CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccc
Q 031554           73 VMTVEPGFGGQKFMPEMMDKVRS-LRNRY--PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus        73 ~m~v~pG~~gq~~~~~~~~ki~~-l~~~~--~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai  133 (157)
                         .-.||....-.++...-+++ ++...  .++.|=+-|||+ .+++.++.++|++.+  |+..
T Consensus       168 ---TSTG~~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga~~i--G~~~  227 (250)
T d1p1xa_         168 ---TSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELF--GADW  227 (250)
T ss_dssp             ---CCCSCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHHHH--CTTS
T ss_pred             ---ecCCcCCCCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHHHHHHh--Cccc
Confidence               34576644444554444443 33332  357788999999 799999999999865  6553

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.80  E-value=4.1  Score=25.89  Aligned_cols=105  Identities=10%  Similarity=0.133  Sum_probs=65.7

Q ss_pred             HHHH-HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCc-EEE
Q 031554           32 QELV-QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLD-IEV  107 (157)
Q Consensus        32 ~~~i-~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~-I~v  107 (157)
                      ...+ +.+++.|..+-.+-   +..+.++.+-   ...|.|++--..||.+|-    +..++|++....  .+..+ |.+
T Consensus        20 ~~~l~~~L~~~G~~v~~a~---~g~eal~~l~---~~~dlillD~~mP~~dG~----el~~~ir~~~~~~~~~~~~ii~l   89 (134)
T d1dcfa_          20 RMVTKGLLVHLGCEVTTVS---SNEECLRVVS---HEHKVVFMDVCMPGVENY----QIALRIHEKFTKQRHQRPLLVAL   89 (134)
T ss_dssp             HHHHHHHHHHTTCEEEEES---SHHHHHHHCC---TTCSEEEEECCSSTTTTT----HHHHHHHHHHC-CCSCCCEEEEE
T ss_pred             HHHHHHHHHHCCCEEEEEC---CHHHHHHHhh---cCCCeEEEEeccCCCchH----HHHHHHHHhcccccCCCCeEEEE
Confidence            3444 44677788765443   3445555443   578988876667987774    344455543221  23344 457


Q ss_pred             EcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554          108 DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  151 (157)
Q Consensus       108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~  151 (157)
                      .|-...+...++.++|+|.+     +.+.=++.+..+.+++.++
T Consensus        90 T~~~~~~~~~~~~~~G~~~~-----l~KP~~~~~L~~~l~~~l~  128 (134)
T d1dcfa_          90 SGNTDKSTKEKCMSFGLDGV-----LLKPVSLDNIRDVLSDLLE  128 (134)
T ss_dssp             ESCCSHHHHHHHHHTTCCEE-----EESSCCHHHHHHHHHHHHS
T ss_pred             eCCCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHhh
Confidence            88888899999999999987     4454466666666666553

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase CelC
species: Clostridium thermocellum [TaxId: 1515]

Probab=82.22  E-value=7.3  Score=28.33  Aligned_cols=103  Identities=13%  Similarity=0.165  Sum_probs=59.7

Q ss_pred             HHHHHHHhCCCCEEEEcc-----cCCcc----------hHHHHHHHHHHcCCceEEEec--CC------------CCH--
Q 031554            7 DYVEPLGKAGASGFTFHV-----EISKD----------NWQELVQRIKSKGMRPGVALK--PG------------TSV--   55 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~-----e~~~~----------~~~~~i~~ir~~g~~~gl~l~--~~------------t~~--   55 (157)
                      ..++.+++.|++.|=++.     +..+.          -+.++++.++++|+++.|.++  |.            ++.  
T Consensus        32 ~d~~~i~~~G~n~vRlpi~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~H~~p~~~~~~~~~~~~~~~~~~  111 (340)
T d1ceoa_          32 KDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKYNLGLVLDMHHAPGYRFQDFKTSTLFEDPNQ  111 (340)
T ss_dssp             HHHHHHHHHTCCEEEEEEEGGGTBCSSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEEEEECCC--------CCTTTCHHH
T ss_pred             HHHHHHHHcCCCEEEeecCHHHhccCCCCCccCHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccccccccccccHHH
Confidence            347888999999999842     22111          147899999999999999884  11            111  


Q ss_pred             -----HhHHhhHh-cCCCCCeEEEEee-eCCC-CCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554           56 -----EEVYPLVE-GANPVEMVLVMTV-EPGF-GGQKFMPEMMDKVRSLRNRYPSLDIEVDG  109 (157)
Q Consensus        56 -----~~~~~~~~-~~~~~d~vl~m~v-~pG~-~gq~~~~~~~~ki~~l~~~~~~~~I~vdG  109 (157)
                           +..+.+.+ ......++.+-.. +|.. +...+..-.-+-++.+|+..|+..|.++|
T Consensus       112 ~~~~~~~~~~la~ry~~~p~v~~~el~NEP~~~~~~~~~~~~~~~~~aIR~~dp~~~I~v~g  173 (340)
T d1ceoa_         112 QKRFVDIWRFLAKRYINEREHIAFELLNQVVEPDSTRWNKLMLECIKAIREIDSTMWLYIGG  173 (340)
T ss_dssp             HHHHHHHHHHHHHHTTTCCSSEEEECCSCCCCSSSHHHHHHHHHHHHHHHHHCSSCCEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC
Confidence                 11222222 1134445444333 4643 22222222333477778888888888876

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.09  E-value=1.4  Score=30.89  Aligned_cols=81  Identities=17%  Similarity=0.136  Sum_probs=48.8

Q ss_pred             HHHHHcCCceEEEecCCCCHHhHHhhHhc--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC
Q 031554           36 QRIKSKGMRPGVALKPGTSVEEVYPLVEG--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG  112 (157)
Q Consensus        36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~  112 (157)
                      +.++++++-+.+..  . +.+...++.+.  ..++..+-+--.         .|..++-|+++++. .+++.|.+..=.+
T Consensus         4 ~~l~~~~iipvlr~--~-~~~~a~~~~~al~~~Gi~~iEitlr---------~p~a~~~i~~l~~~~~~~~~vGaGTV~~   71 (202)
T d1wa3a1           4 ELFKKHKIVAVLRA--N-SVEEAKEKALAVFEGGVHLIEITFT---------VPDADTVIKELSFLKEKGAIIGAGTVTS   71 (202)
T ss_dssp             HHHHHHCEEEEECC--S-SHHHHHHHHHHHHHTTCCEEEEETT---------STTHHHHHHHTHHHHHTTCEEEEESCCS
T ss_pred             HHHHhCCEEEEEEC--C-CHHHHHHHHHHHHHcCCCEEEEecC---------CccHHHHHHHHHHhcCCCcEEEeccccc
Confidence            34555554443333  2 23333333321  156777755211         23466677777653 4678777766677


Q ss_pred             HhhHHHHHHcCCCEEE
Q 031554          113 PSTIAEAASAGANCIV  128 (157)
Q Consensus       113 ~~~i~~~~~~Gad~vV  128 (157)
                      .+++++..++||+.+|
T Consensus        72 ~~~~~~a~~aGa~fiv   87 (202)
T d1wa3a1          72 VEQCRKAVESGAEFIV   87 (202)
T ss_dssp             HHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHhhcccEEe
Confidence            9999999999999886

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.89  E-value=5  Score=26.23  Aligned_cols=114  Identities=17%  Similarity=0.210  Sum_probs=64.6

Q ss_pred             HHHHHHHHHcCCc-----eEEEecCCCCHHhHHhhHhc---CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCC
Q 031554           32 QELVQRIKSKGMR-----PGVALKPGTSVEEVYPLVEG---ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSL  103 (157)
Q Consensus        32 ~~~i~~ir~~g~~-----~gl~l~~~t~~~~~~~~~~~---~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~  103 (157)
                      .++.+++++.--.     -=+.+......+...+.++.   .+.+|.|++....+.+.+....+....-++.+++...+.
T Consensus        35 ~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~d~~vd~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  114 (163)
T d2csua3          35 EKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEK  114 (163)
T ss_dssp             HHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHcCCCcCEEEEeeccCCcccccHHHHHHHHHHHHHHhcCCC
Confidence            4566666664211     12334444444444443331   278999887666555555444444444455555554343


Q ss_pred             c--EEEEcCCCHhh-HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554          104 D--IEVDGGLGPST-IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  154 (157)
Q Consensus       104 ~--I~vdGGI~~~~-i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~  154 (157)
                      +  ...-||-..+. .+.+.++|.=       +|  ++|+++++.+....+-.|
T Consensus       115 pv~~~~~~~~~~~~~~~~l~~~Gip-------~f--~~pe~a~~Al~~l~~~~r  159 (163)
T d2csua3         115 PVLAMFMAGYVSEKAKELLEKNGIP-------TY--ERPEDVASAAYALVEQAK  159 (163)
T ss_dssp             CEEEEEECTTTTHHHHHHHHTTTCC-------EE--SSHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCChHHHHHHHHHCCCC-------cC--CCHHHHHHHHHHHHHHHh
Confidence            4  34577766555 4556666644       34  689999999998776544

>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DR1281-like
domain: Putative phosphatase DR1281
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.60  E-value=0.79  Score=33.58  Aligned_cols=55  Identities=16%  Similarity=0.324  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHhhCCCCcEE------EEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554           88 EMMDKVRSLRNRYPSLDIE------VDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  143 (157)
Q Consensus        88 ~~~~ki~~l~~~~~~~~I~------vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~  143 (157)
                      ...+.+.++|+.. ++-|+      =..|||++...++.++|+|++..|--+|..++....+
T Consensus        17 ~v~~~Lp~lk~~~-DfVIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wdkkei~~~i   77 (255)
T d1t70a_          17 VLQNHLPTIRPQF-DFVIVNMENSAGGFGMHRDAARGALEAGAGCLTLGNHAWHHKDIYPML   77 (255)
T ss_dssp             HHHHHHHHHGGGC-SEEEEECTBTTTTSSCCHHHHHHHHHHTCSEEECCTTTTSSTTHHHHH
T ss_pred             HHHHHhHHHHhhC-CEEEECCccCCCCcCCCHHHHHHHHHcCCcEEEcCchhhcchhHHHHH
Confidence            3445577777763 54332      1458999999999999999999999999777655544

>d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: EAL domain-like
family: EAL domain
domain: Hypothetical protein YkuI, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.11  E-value=2.8  Score=29.74  Aligned_cols=92  Identities=8%  Similarity=0.080  Sum_probs=57.9

Q ss_pred             HHHHHHHHHcCCceEEE-ecC-CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc----ccchhHHHHHHHHHhhCCCCcE
Q 031554           32 QELVQRIKSKGMRPGVA-LKP-GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ----KFMPEMMDKVRSLRNRYPSLDI  105 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~-l~~-~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq----~~~~~~~~ki~~l~~~~~~~~I  105 (157)
                      .+.++.+|+.|+++++. +.+ ..+++.+..+     .+|+|=+-   +.+-..    ......++.+-.+.+. .+..+
T Consensus       135 ~~~l~~L~~~G~~lalddfG~~~~sl~~L~~l-----~~d~IKld---~s~i~~~~~~~~~~~~l~~l~~~a~~-~~~~v  205 (261)
T d2basa1         135 YHMLAYYRTYGIKIAVDNIGKESSNLDRIALL-----SPDLLKID---LQALKVSQPSPSYEHVLYSISLLARK-IGAAL  205 (261)
T ss_dssp             HHHHHHHHTTTCEEEEEEETTTBCCHHHHHHH-----CCSEEEEE---CTTTC----CCHHHHHHHHHHHHHHH-HTCEE
T ss_pred             HHHHHHHhhcCceeeecCCccCccchhHHhhh-----hhhhhhcc---cccccccccchhhHHHHHHHHHHHHH-cCCEE
Confidence            67888899999999885 543 3455555554     48988663   432211    1112223333333322 26778


Q ss_pred             EEEcCCCHhhHHHHHHcCCCEEEEcccc
Q 031554          106 EVDGGLGPSTIAEAASAGANCIVAGSSV  133 (157)
Q Consensus       106 ~vdGGI~~~~i~~~~~~Gad~vV~GSai  133 (157)
                      .+.|==+.++...+.+.|+|.+ =|-++
T Consensus       206 IaeGVE~~~~~~~l~~lg~d~~-QG~~~  232 (261)
T d2basa1         206 LYEDIEANFQLQYAWRNGGRYF-QGYYL  232 (261)
T ss_dssp             EEECCCSHHHHHHHHHTTEEEE-CSTTT
T ss_pred             EEEeCCcHHHHHHHHHcCCCEE-ECCcc
Confidence            7777777999999999999965 45444

>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=80.93  E-value=5.2  Score=29.84  Aligned_cols=48  Identities=25%  Similarity=0.407  Sum_probs=37.3

Q ss_pred             cEEEEcCCCHhhHHHHHH-cC-CCEE-EEcccccCCCC-HHHHHHHHHHHHH
Q 031554          104 DIEVDGGLGPSTIAEAAS-AG-ANCI-VAGSSVFGAPE-PAHVISLMRKSVE  151 (157)
Q Consensus       104 ~I~vdGGI~~~~i~~~~~-~G-ad~v-V~GSai~~~~d-~~~~~~~l~~~~~  151 (157)
                      -=+.-||+++.+++.+.+ .| .|++ ..|.+|++.++ +..-.+.+|+.++
T Consensus       227 ~Pv~sgG~~~~~vp~~~~~~G~~Dvil~~GGGi~gHP~G~~AGa~A~rqA~e  278 (320)
T d5ruba1         227 TPIISGGMNALRMPGFFENLGNANVILTAGGGAFGHIDGPVAGARSLRQAWQ  278 (320)
T ss_dssp             EEEEEECCCTTTHHHHHHHHSCCCCEEEECTTTTCCTTCHHHHHHHHHHHHH
T ss_pred             ceecCCCCcHhHhHHHHHHhCCCcEEEEcCcccccCCCchHHhHHHHHHHHH
Confidence            346899999999988654 89 6885 68999998876 6677777777655

>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=80.76  E-value=3.8  Score=30.75  Aligned_cols=133  Identities=12%  Similarity=0.096  Sum_probs=74.0

Q ss_pred             HHHHHhCCCCEEEEcccCCcchHHHHHHHHH----HcCCceEEEecC----------CC--CHHhHHhhHhcCCCCCeEE
Q 031554            9 VEPLGKAGASGFTFHVEISKDNWQELVQRIK----SKGMRPGVALKP----------GT--SVEEVYPLVEGANPVEMVL   72 (157)
Q Consensus         9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir----~~g~~~gl~l~~----------~t--~~~~~~~~~~~~~~~d~vl   72 (157)
                      .+.+.++|++.+.+-.-..-   ...++.++    +.++-  +..++          ..  +...+.++.++ .++|.+.
T Consensus       104 a~~a~e~G~~~~mi~~~~~G---~~a~~~l~~~~~~~~l~--ih~Hra~~ga~tr~~~~Gis~~vl~kl~RL-aGaD~ih  177 (325)
T d1wdda1         104 AVFARELGVPIVMHDYLTGG---FTANTSLAHYCRDNGLL--LHIHRAMHAVIDRQKNHGMHFRVLAKALRM-SGGDHIH  177 (325)
T ss_dssp             HHHHHHHTCSEEEEEHHHHC---HHHHHHHHHHHHHHTCE--EEEECTTHHHHHSCSSSEECHHHHHHHHHH-HCCSEEE
T ss_pred             HHHHHHcCCCEEEEeccccc---HHHHHHHHHhhhhcCce--eecccccccccccCCCCCccHHHHHHHHHH-cCCCccc
Confidence            34567889999987643322   23333333    33332  22221          11  33456666666 6999997


Q ss_pred             EEeeeCCCCCc-ccc-hhHHHHHHHHHhh------------------CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEE-c
Q 031554           73 VMTVEPGFGGQ-KFM-PEMMDKVRSLRNR------------------YPSLDIEVDGGLGPSTIAEA-ASAGANCIVA-G  130 (157)
Q Consensus        73 ~m~v~pG~~gq-~~~-~~~~~ki~~l~~~------------------~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~-G  130 (157)
                      +-    +.+|. .+. ++..+-.+.++..                  .+.+-=+.-||+++..++.+ ...|-|.++. |
T Consensus       178 ~~----~~~Gk~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~q~~~~~k~~~Pv~sGG~~~g~vp~~~~~~G~D~il~~G  253 (325)
T d1wdda1         178 AG----TVVGKLEGEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFG  253 (325)
T ss_dssp             CC----CSSSSBCCCHHHHHHHHHHHHCSEECCBGGGTBCSCEECTTCCCCEEEEESSCCGGGHHHHHHHHCSSSEEECS
T ss_pred             cC----ccccCcCCCHHHHHHHHHHHHhhhcccccccCccccCcccCCCCeeeecCCCCCHhHHHHHHHhcCCcEEEEcC
Confidence            63    33222 122 2344444555431                  12344568999999999875 5568887654 7


Q ss_pred             ccccCCCC-HHHHHHHHHHHHH
Q 031554          131 SSVFGAPE-PAHVISLMRKSVE  151 (157)
Q Consensus       131 Sai~~~~d-~~~~~~~l~~~~~  151 (157)
                      ..|++.++ +..=.+.+|+.++
T Consensus       254 GGi~gHP~G~aAGa~A~RqA~e  275 (325)
T d1wdda1         254 GGTLGHPWGNAPGAAANRVALE  275 (325)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHH
T ss_pred             cceecCCCcccchHHHHHHHHH
Confidence            78998764 4444455555443

>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.67  E-value=3  Score=31.58  Aligned_cols=108  Identities=17%  Similarity=0.162  Sum_probs=66.1

Q ss_pred             HHHhCCCCEEEEcccCCcchHHHHHHHHHHc-CC-ceEE-Ee------------------------------cCCCCHHh
Q 031554           11 PLGKAGASGFTFHVEISKDNWQELVQRIKSK-GM-RPGV-AL------------------------------KPGTSVEE   57 (157)
Q Consensus        11 ~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g~-~~gl-~l------------------------------~~~t~~~~   57 (157)
                      .++++|||+|.-- +..|.-+..+-+.+.+. |. .+++ +-                              +|.+.-+.
T Consensus       167 ~~A~AGaDiVAPS-DMMDGrV~aIR~~Ld~~~~~~~~~ImSYsaKyaS~fYGPFRdA~~S~p~~gdrktYQmd~~n~~eA  245 (340)
T d1h7na_         167 NYAKAGAHCVAPS-DMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLA  245 (340)
T ss_dssp             HHHHHTCSEEEEC-CCCTTHHHHHHHHHHHTTCTTTCEEEEEEEEBCSSCCHHHHHHHTCCCSSSCSTTTSBCTTCHHHH
T ss_pred             HHHHccCCccccc-ccchhHHHHHHHHHHHhcCCcceeeehHHHHHhhhhhhHHHHHHhhhhcCCCCceeecCchhhHHH
Confidence            4588999998764 33344423333455555 33 3544 22                              12223344


Q ss_pred             HHhhHh-cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---------------EcCCCH-----hhH
Q 031554           58 VYPLVE-GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---------------DGGLGP-----STI  116 (157)
Q Consensus        58 ~~~~~~-~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v---------------dGGI~~-----~~i  116 (157)
                      +++... ..++.|++++   .||.       .-++-|+++++..+++++.+               -|-++.     |.+
T Consensus       246 l~e~~~D~~EGAD~lMV---KPa~-------~yLDii~~~k~~~~~~Pv~aYqVSGEYami~~aa~~G~~d~~~~~~E~l  315 (340)
T d1h7na_         246 RRALERDMSEGADGIIV---KPST-------FYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESH  315 (340)
T ss_dssp             HHHHHHHHHTTCSEEEE---ESSG-------GGHHHHHHHHHHTTTSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCeEEe---cchH-------HHHHHHHHHHHhCCCCCEEEEEchHHHHHHHHHHHCCCCcHHHHHHHHH
Confidence            433322 1389999965   6872       24778888988776777654               577874     566


Q ss_pred             HHHHHcCCCEEEE
Q 031554          117 AEAASAGANCIVA  129 (157)
Q Consensus       117 ~~~~~~Gad~vV~  129 (157)
                      ..++.+|||+++.
T Consensus       316 ~~~kRAGAd~IiT  328 (340)
T d1h7na_         316 QGFLRAGARLIIT  328 (340)
T ss_dssp             HHHHHTTCSEEEE
T ss_pred             HHHHhcCCCEEEe
Confidence            6789999999974

>d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: L-Ala-D/L-Glu epimerase
species: Escherichia coli [TaxId: 562]

Probab=80.36  E-value=0.89  Score=31.68  Aligned_cols=113  Identities=12%  Similarity=0.069  Sum_probs=60.9

Q ss_pred             cChHHHHH---HHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554            3 TNPLDYVE---PLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE   77 (157)
Q Consensus         3 ~~p~~~i~---~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~   77 (157)
                      ..|+.+.+   .+.+.|...+-+...... . .+.++++|+.  ++...+..|-..+.+.+.++++.+...+...+  =+
T Consensus        15 ~tpe~~~~~a~~~~~~G~~~~KiKvg~~~-d-~~~i~~ir~~~~d~~l~vDaN~~~s~~~A~~~~~~l~~~~l~~i--Ee   90 (208)
T d1jpdx1          15 GTPDQMANSASTLWQAGAKLLKVKLDNHL-I-SERMVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGVAML--EQ   90 (208)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEECCSSC-H-HHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHHHHTTCCEE--EC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCCCc-H-HHHHHHHHHhccccEEEEecccccchhHHHHHHHHHHhcccccc--Cc
Confidence            45665554   556679999888765433 3 5678888875  34455555655555544333321022222211  12


Q ss_pred             CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554           78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA  129 (157)
Q Consensus        78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~  129 (157)
                      |      +.+...+-.++   ...+++|.+|-++. .+.+..+. ..+|++.+
T Consensus        91 P------~~~~d~~~~~~---l~~~~pi~~~E~~~~~~~~~~l~-~~~d~~~~  133 (208)
T d1jpdx1          91 P------LPAQDDAALEN---FIHPLPICADESCHTRSNLKALK-GRYEMVNI  133 (208)
T ss_dssp             C------SCTTSCGGGGS---SCCSSCEEESTTCSSGGGHHHHB-TTBSEEEE
T ss_pred             c------CCccCHHHHHh---hhcccceecCCCcCCHHHHHHHh-hccCEEEe
Confidence            3      22222222222   22357888888888 67777774 34666543

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.35  E-value=1.7  Score=29.74  Aligned_cols=65  Identities=17%  Similarity=0.109  Sum_probs=46.5

Q ss_pred             HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554            7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVM   74 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m   74 (157)
                      ..+..+.++|+|.|.+---.+++. .+..+.++..+-++-+..+-+-..+.+.+|..  .++|+|-.-
T Consensus        89 ~e~~~a~~~g~d~i~LDn~~pe~~-k~~~~~lk~~~~~i~lEaSGGI~~~ni~~~a~--~GVD~Is~g  153 (170)
T d1o4ua1          89 EDALRAVEAGADIVMLDNLSPEEV-KDISRRIKDINPNVIVEVSGGITEENVSLYDF--ETVDVISSS  153 (170)
T ss_dssp             HHHHHHHHTTCSEEEEESCCHHHH-HHHHHHHHHHCTTSEEEEEECCCTTTGGGGCC--TTCCEEEEG
T ss_pred             HHHHHHHhcCccEEEEcCcChhhH-hHHHHHHHhhCCcEEEEEECCCCHHHHHHHHH--cCCCEEEcC
Confidence            356678899999988764443334 67778888888777777665666666677765  589988664

>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FAD-linked oxidoreductase
family: Methylenetetrahydrofolate reductase
domain: Methylenetetrahydrofolate reductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.15  E-value=8.6  Score=27.83  Aligned_cols=127  Identities=20%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             HHHHHHHhCCCCEEEEcccCCc----chHHHHHHHHHHcCCceEEEecC-CCCHHhHHhhHh-c-CCCCCeEEEEeeeCC
Q 031554            7 DYVEPLGKAGASGFTFHVEISK----DNWQELVQRIKSKGMRPGVALKP-GTSVEEVYPLVE-G-ANPVEMVLVMTVEPG   79 (157)
Q Consensus         7 ~~i~~~~~~gad~v~vh~e~~~----~~~~~~i~~ir~~g~~~gl~l~~-~t~~~~~~~~~~-~-~~~~d~vl~m~v~pG   79 (157)
                      ..++.+.+.++|+|+|-..+..    .+ ..+.+.+++.|+.+..=+.. +..-..++..+. . ..++.-|++++-+|-
T Consensus        33 ~~~~~L~~~~p~fisVT~~~~g~~~~~t-l~~a~~l~~~G~~~i~Hlt~r~~n~~~l~~~l~~~~~~GI~niLal~GD~p  111 (292)
T d1v93a_          33 RTLEELKAFRPAFVSITYGAMGSTRERS-VAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPP  111 (292)
T ss_dssp             HHHHHHHTTCCSEEEECCCGGGTTHHHH-HHHHHHHHHTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCCEEEECCCCCC
T ss_pred             HHHHHHhcCCCCEEEecCCCCCccchhH-HHHHHHHHhCCCCceeeeeecCchHHHHHHHHHHHHHhCcCeEeeccCCCC
Confidence            4567788889999887643322    23 55777888999998775543 222333333322 1 258999999987754


Q ss_pred             CCCcccc------hhHHHHHHHHHhhC-CCCcEEEEcCCC-----------HhhHHHHHHcCCCEEEEcccccC
Q 031554           80 FGGQKFM------PEMMDKVRSLRNRY-PSLDIEVDGGLG-----------PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus        80 ~~gq~~~------~~~~~ki~~l~~~~-~~~~I~vdGGI~-----------~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                      .++..|.      ....+-++.+++.. ..+.+.+.|--.           .+.+..=.++|||.++ -=.+|.
T Consensus       112 ~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~ig~a~~Peghp~~~~~~~~~~~l~~K~~aGA~fii-TQ~~FD  184 (292)
T d1v93a_         112 RGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAI-TQLFFN  184 (292)
T ss_dssp             TTCSSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTCSSHHHHHHHHHHHHHTTCSEEE-EEECSS
T ss_pred             ccCcccCCcccchhHHHHHHHHHHHhcCCCcccccccCCCCCccchhHHHHHHHHHHHHHhccCeEE-Eeeecc
Confidence            3433332      23555566666543 235555543321           1223445789999654 335664

>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Escherichia coli [TaxId: 562]

Probab=80.08  E-value=7.6  Score=27.17  Aligned_cols=95  Identities=14%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee---CCCCCcccchhHHHHHHHHH-hhCCCCcEEE
Q 031554           32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE---PGFGGQKFMPEMMDKVRSLR-NRYPSLDIEV  107 (157)
Q Consensus        32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~---pG~~gq~~~~~~~~ki~~l~-~~~~~~~I~v  107 (157)
                      .+.++.+.+.|+++=+... -++.+.+....   .++++|....-.   -|.+|    ...+..+.++. ....+.+|.+
T Consensus        93 ~~ai~~L~~~Gi~vn~Tav-fs~~Qa~~Aa~---aga~yvspy~gR~~d~g~dg----~~~i~~~~~~~~~~~~~tkIl~  164 (220)
T d1l6wa_          93 LAAIKMLKAEGIPTLGTAV-YGAAQGLLSAL---AGAEYVAPYVNRIDAQGGSG----IQTVTDLHQLLKMHAPQAKVLA  164 (220)
T ss_dssp             HHHHHHHHHHTCCEEEEEE-CSHHHHHHHHH---HTCSEEEEBHHHHHHTTSCH----HHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cchhhhhhhcccchhhhhc-ccHHHHHHhhh---cCCcEEeeeeeehhhcccCC----hHHHHHHHHHHHhcCCCceEee
Confidence            3455556666777765432 23334444333   577887554210   11111    12333333332 2346778766


Q ss_pred             EcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554          108 DGGLG-PSTIAEAASAGANCIVAGSSVFG  135 (157)
Q Consensus       108 dGGI~-~~~i~~~~~~Gad~vV~GSai~~  135 (157)
                       ++++ .+++.++..+|+|++.+.-.+++
T Consensus       165 -AS~R~~~~v~~~~~~G~d~iTip~~v~~  192 (220)
T d1l6wa_         165 -ASFKTPRQALDCLLAGCESITLPLDVAQ  192 (220)
T ss_dssp             -BCCSSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             -hhcCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence             5565 79999999999999999977664