Citrus Sinensis ID: 031556


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
MDPEGQRASAASASAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSSSKNTALLKRSRKFQPEDRLFSLSSVTSPAAEEQAIGREDGRSDFGPGRSKGGGIYGNGQGKPKKGRGASRDAKRYRHSSEDFDYDDDPDVTL
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccccccHHHHcccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccEEEcccHHcccccccccHHccccccHHHccEcccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mdpegqraSAASASAVMASLLSKKAKLQEELNNIEKQVYDMETsylqdpsqcgnvLKGFEGFLSSSKNTALLKRsrkfqpedrlfslssvtspaaeeqaigredgrsdfgpgrskgggiygngqgkpkkgrgasrdakryrhssedfdydddpdvtl
mdpegqrasaasaSAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSSSKNTALLKrsrkfqpedrlfslssvtspaaeeqaigredgrsdfgpgrskgggiygngqgkpkkgrgasrdakryrhssedfdydddpdvtl
MDPEGQRasaasasavmasllskkaklQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSSSKNTALLKRSRKFQPEDRLFSLSSVTSPAAEEQAIGREDGRSDFGPGRSKgggiygngqgKPKKGRGASRDAKRYRHSSEdfdydddpdVTL
*************************************VYDM*TSYLQ***QCGNVLKGFEGFL**********************************************************************************************
*************************KLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEG*********************RLFSLSS********************************************************************
****************MASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSSSKNTALLKRSRKFQPEDRLFSLSSVTSPAAEEQAIGREDGRSDFGPGRSKGGGIYGN***********************DFDYDDDPDVTL
***********SASAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLS*********************************************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDPEGQRASxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYLQDPSQCGNVLKGFEGFLSSSKNTALLKRSRKFQPEDRLFSLSSVTSPAAEEQAIGREDGRSDFGPGRSKGGGIYGNGQGKPKKGRGASRDAKRYRHSSEDFDYDDDPDVTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query157 2.2.26 [Sep-21-2011]
Q52KD8188 Chromatin modification-re N/A no 0.560 0.468 0.422 3e-13
Q5ZIX3182 Chromatin modification-re yes no 0.560 0.483 0.422 3e-13
Q68ER9191 Chromatin modification-re yes no 0.560 0.460 0.422 4e-13
Q2VPQ9191 Chromatin modification-re yes no 0.560 0.460 0.422 5e-13
Q9HAF1191 Chromatin modification-re yes no 0.560 0.460 0.422 5e-13
Q58CU0191 Chromatin modification-re yes no 0.560 0.460 0.422 5e-13
Q6AZD3192 Chromatin modification-re yes no 0.503 0.411 0.432 2e-12
Q6CPA6115 Chromatin modification-re yes no 0.439 0.6 0.454 7e-07
O14240138 Chromatin modification-re yes no 0.547 0.623 0.363 4e-06
Q75BT598 Chromatin modification-re yes no 0.566 0.908 0.322 1e-05
>sp|Q52KD8|EAF6_XENLA Chromatin modification-related protein MEAF6 OS=Xenopus laevis GN=meaf6 PE=2 SV=1 Back     alignment and function desciption
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 60/90 (66%), Gaps = 2/90 (2%)

Query: 17  MASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSSSKNTALL--KR 74
           +A L+ +K +L E L N+E+Q+Y  E SYL+D    GN+++G++ +L++ KN+     +R
Sbjct: 19  LAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQKNSNSKNDRR 78

Query: 75  SRKFQPEDRLFSLSSVTSPAAEEQAIGRED 104
           +RKF+  +RLFS SSVTS AA     G +D
Sbjct: 79  NRKFKEAERLFSKSSVTSAAAVSSLAGVQD 108




Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histone H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. Component of the HBO1 complex which has a histone H4-specific acetyltransferase activity, a reduced activity toward histone H3 and is responsible for the bulk of histone H4 acetylation in vivo. Component of the MOZ/MORF complex which has a histone H3 acetyltransferase activity.
Xenopus laevis (taxid: 8355)
>sp|Q5ZIX3|EAF6_CHICK Chromatin modification-related protein MEAF6 OS=Gallus gallus GN=MEAF6 PE=2 SV=1 Back     alignment and function description
>sp|Q68ER9|EAF6_XENTR Chromatin modification-related protein MEAF6 OS=Xenopus tropicalis GN=meaf6 PE=2 SV=1 Back     alignment and function description
>sp|Q2VPQ9|EAF6_MOUSE Chromatin modification-related protein MEAF6 OS=Mus musculus GN=Meaf6 PE=2 SV=1 Back     alignment and function description
>sp|Q9HAF1|EAF6_HUMAN Chromatin modification-related protein MEAF6 OS=Homo sapiens GN=MEAF6 PE=1 SV=1 Back     alignment and function description
>sp|Q58CU0|EAF6_BOVIN Chromatin modification-related protein MEAF6 OS=Bos taurus GN=MEAF6 PE=2 SV=2 Back     alignment and function description
>sp|Q6AZD3|EAF6_DANRE Chromatin modification-related protein MEAF6 OS=Danio rerio GN=meaf6 PE=2 SV=1 Back     alignment and function description
>sp|Q6CPA6|EAF6_KLULA Chromatin modification-related protein EAF6 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=EAF6 PE=3 SV=1 Back     alignment and function description
>sp|O14240|EAF6_SCHPO Chromatin modification-related protein eaf6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=eaf6 PE=1 SV=1 Back     alignment and function description
>sp|Q75BT5|EAF6_ASHGO Chromatin modification-related protein EAF6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=EAF6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
388498430157 unknown [Medicago truncatula] 0.993 0.993 0.829 3e-67
388518091156 unknown [Lotus japonicus] 0.987 0.993 0.828 2e-66
351721684157 uncharacterized protein LOC100499798 [Gl 0.993 0.993 0.803 6e-66
351727016157 uncharacterized protein LOC100306348 [Gl 0.993 0.993 0.803 2e-65
224082808157 predicted protein [Populus trichocarpa] 0.910 0.910 0.812 4e-59
224066249157 predicted protein [Populus trichocarpa] 0.910 0.910 0.812 7e-59
225438151251 PREDICTED: uncharacterized protein LOC10 0.980 0.613 0.775 1e-57
297744142156 unnamed protein product [Vitis vinifera] 0.980 0.987 0.775 4e-57
255567276157 conserved hypothetical protein [Ricinus 0.891 0.891 0.780 1e-55
449521507144 PREDICTED: chromatin modification-relate 0.828 0.902 0.816 5e-53
>gi|388498430|gb|AFK37281.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 131/158 (82%), Positives = 142/158 (89%), Gaps = 2/158 (1%)

Query: 1   MDPEGQRASAASASAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFE 60
           M+ EGQ+ SA + SA++ASLLS++AKL EEL NIEKQVYDMETSYLQDP QCGNVLKGFE
Sbjct: 1   MESEGQK-SAVNPSAMLASLLSRRAKLHEELRNIEKQVYDMETSYLQDPGQCGNVLKGFE 59

Query: 61  GFLSSSKNTALLKRSRKFQPEDRLFSLSSVTSPAAEEQAIGREDGRSDFGPGRSKGGGIY 120
           GFLSS+KNTA LKRSRKFQPEDRLFSLSSVTSPAAEE A GR+DGRSDFGPGRSKGG IY
Sbjct: 60  GFLSSTKNTAFLKRSRKFQPEDRLFSLSSVTSPAAEELAAGRDDGRSDFGPGRSKGGTIY 119

Query: 121 GNGQGKPKKGRGASRDAKRYRHSSE-DFDYDDDPDVTL 157
            NGQGKPKKGRGA RDAKR R SSE DFDY+DDPD+TL
Sbjct: 120 ANGQGKPKKGRGAPRDAKRARASSEQDFDYEDDPDMTL 157




Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518091|gb|AFK47107.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351721684|ref|NP_001236194.1| uncharacterized protein LOC100499798 [Glycine max] gi|255626681|gb|ACU13685.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|351727016|ref|NP_001237402.1| uncharacterized protein LOC100306348 [Glycine max] gi|255628271|gb|ACU14480.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224082808|ref|XP_002306847.1| predicted protein [Populus trichocarpa] gi|222856296|gb|EEE93843.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224066249|ref|XP_002302046.1| predicted protein [Populus trichocarpa] gi|222843772|gb|EEE81319.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225438151|ref|XP_002273229.1| PREDICTED: uncharacterized protein LOC100260000 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744142|emb|CBI37112.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255567276|ref|XP_002524619.1| conserved hypothetical protein [Ricinus communis] gi|223536172|gb|EEF37827.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449521507|ref|XP_004167771.1| PREDICTED: chromatin modification-related protein MEAF6-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
TAIR|locus:505006459163 AT4G14385 "AT4G14385" [Arabido 0.732 0.705 0.677 2.7e-36
FB|FBgn0035624225 Eaf6 "Eaf6" [Drosophila melano 0.503 0.351 0.460 2.1e-13
UNIPROTKB|B1AK63169 MEAF6 "Chromatin modification- 0.490 0.455 0.443 1.2e-12
UNIPROTKB|I3LKZ699 MEAF1 "Uncharacterized protein 0.490 0.777 0.430 3.1e-12
UNIPROTKB|Q52KD8188 meaf6 "Chromatin modification- 0.484 0.404 0.435 3.1e-12
UNIPROTKB|Q5ZIX3182 MEAF6 "Chromatin modification- 0.484 0.417 0.435 3.9e-12
UNIPROTKB|A6H762201 C3H1orf149 "Chromatin modifica 0.484 0.378 0.435 3.9e-12
UNIPROTKB|Q58CU0191 MEAF6 "Chromatin modification- 0.484 0.397 0.435 3.9e-12
UNIPROTKB|F1PY51161 MEAF6 "Uncharacterized protein 0.484 0.472 0.435 3.9e-12
UNIPROTKB|B1AK64192 MEAF6 "Chromatin modification- 0.484 0.395 0.435 3.9e-12
TAIR|locus:505006459 AT4G14385 "AT4G14385" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 82/121 (67%), Positives = 95/121 (78%)

Query:    28 QEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSSSKNTALLKRSRKFQPEDRLFSL 87
             ++EL +IEKQVY++ETSYLQ+ S  GN LKGFEGFLSSSK+TA  KRSRKFQPEDR+FSL
Sbjct:    26 RQELRSIEKQVYELETSYLQESSHIGNALKGFEGFLSSSKSTASAKRSRKFQPEDRVFSL 85

Query:    88 SSVTSPAAEEQAIGREDGRSDFGPGRSKXXXXXXXXXXKPKKGRGAS---RDAKRYRHSS 144
             SSVTSPAAEE  +GREDGR++ GPGRSK          KPKKGRG S   R+AKR R S+
Sbjct:    86 SSVTSPAAEELGVGREDGRAELGPGRSKGGLSTQG---KPKKGRGQSIIAREAKRSRPST 142

Query:   145 E 145
             E
Sbjct:   143 E 143




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005773 "vacuole" evidence=IDA
GO:0048573 "photoperiodism, flowering" evidence=RCA
FB|FBgn0035624 Eaf6 "Eaf6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|B1AK63 MEAF6 "Chromatin modification-related protein MEAF6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LKZ6 MEAF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q52KD8 meaf6 "Chromatin modification-related protein MEAF6" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIX3 MEAF6 "Chromatin modification-related protein MEAF6" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A6H762 C3H1orf149 "Chromatin modification-related protein MEAF6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q58CU0 MEAF6 "Chromatin modification-related protein MEAF6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PY51 MEAF6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B1AK64 MEAF6 "Chromatin modification-related protein MEAF6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
pfam0934080 pfam09340, NuA4, Histone acetyltransferase subunit 7e-32
>gnl|CDD|220187 pfam09340, NuA4, Histone acetyltransferase subunit NuA4 Back     alignment and domain information
 Score =  108 bits (272), Expect = 7e-32
 Identities = 43/74 (58%), Positives = 57/74 (77%)

Query: 20 LLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSSSKNTALLKRSRKFQ 79
          LL KK KL+EEL  +E+Q+YD ET YL+D +  GN++KGF+G+L SS N +  +R RKF 
Sbjct: 7  LLQKKKKLEEELAALERQIYDKETEYLEDTTSGGNIIKGFDGYLKSSTNGSAQRRKRKFT 66

Query: 80 PEDRLFSLSSVTSP 93
           +DR+FSLSSVTSP
Sbjct: 67 DDDRIFSLSSVTSP 80


The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control. Length = 80

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 157
PF0934080 NuA4: Histone acetyltransferase subunit NuA4; Inte 100.0
KOG3856135 consensus Uncharacterized conserved protein [Funct 99.91
KOG3856135 consensus Uncharacterized conserved protein [Funct 89.05
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast [] Back     alignment and domain information
Probab=100.00  E-value=1.2e-34  Score=208.11  Aligned_cols=80  Identities=54%  Similarity=0.855  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCccceeecccccccCCCcchhhhcCCCCCCCCccccCcCCCch
Q 031556           14 SAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSSSKNTALLKRSRKFQPEDRLFSLSSVTSP   93 (157)
Q Consensus        14 ~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNIIKGFDgylkss~~s~~~kR~~~f~d~DRIFSlSS~Tsp   93 (157)
                      +++|++||++|++|+++|..||+|||++||+||++++++||||||||||++++..+++.+|++.|+++|||||+||+|||
T Consensus         1 k~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~GNiikGfd~y~k~~~~~~~~~~~~~~~~~dRiFS~SS~t~~   80 (80)
T PF09340_consen    1 KKELKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYGNIIKGFDGYLKSSSGAANSRRKRGFTDDDRIFSLSSVTSP   80 (80)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCeeChhhhhccccccccccccCCCCccccCcccccccCC
Confidence            47899999999999999999999999999999998889999999999999998766677889999999999999999997



NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].

>KOG3856 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3856 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00