Citrus Sinensis ID: 031559

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTKV
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHcccccHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccEEEEccccccEEEcccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
memassprtvEEIYKDFCARRAGVVRALTNDvdefyglcdpdkenlclyghpneswevtlpaeevppelpepalginfardgmnrkDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLindqptvfevvterkpikdkpsvdsssksrgstkv
Flexible Loop (DISEMBL)
memassprtvEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLfslindqptvfevvterkpikdkpsvdsssksrgstkv
Low Complexity Region (SEG)
MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWevtlpaeevppelpepalGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVFEVVTERkpikdkpsvdsssksrgstkv
Disordered region (IsUnstruct)
**********EEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPA**********ALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVFEVV************************
Disordered Region (DISOPRED)
******P***EEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVF***************************
Disordered Region (DISEMBL)
*********VEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVFEVVTERK********************
Disordered Region (DISPRO)
********TVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVFEVVTER*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q75IR6	258	PHD finger protein ALFIN-	yes	no	0.968	0.589	0.668	6e-59
A2Y0Q2	258	PHD finger protein ALFIN-	N/A	no	0.968	0.589	0.668	6e-59
Q9FFF5	241	PHD finger protein ALFIN-	yes	no	0.974	0.634	0.785	1e-57
Q84TV4	247	PHD finger protein ALFIN-	no	no	0.987	0.627	0.741	3e-57
B8AMA8	247	PHD finger protein ALFIN-	N/A	no	0.987	0.627	0.741	3e-57
Q8H383	244	PHD finger protein ALFIN-	no	no	0.993	0.639	0.751	1e-56
B8B8I3	244	PHD finger protein ALFIN-	N/A	no	0.993	0.639	0.751	1e-56
Q9SRM4	246	PHD finger protein ALFIN-	no	no	0.980	0.626	0.8	1e-54
Q7XUW3	256	PHD finger protein ALFIN-	no	no	0.936	0.574	0.617	1e-50
A2XTW9	256	PHD finger protein ALFIN-	N/A	no	0.936	0.574	0.610	8e-50

>sp|Q75IR6|ALFL1_ORYSJ PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. japonica GN=Os05g0163100 PE=2 SV=1

 Score =  226 bits (575), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 133/154 (86%), Gaps = 2/154 (1%)

Query: 5   SSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEE 64
           S+PR+VE+I+KDF ARR  ++RALT+DV++FY  CDP+KENLCLYG+ NE+W+V LPAEE
Sbjct: 21  SAPRSVEDIFKDFRARRTAILRALTHDVEDFYAQCDPEKENLCLYGYANEAWQVALPAEE 80

Query: 65  VPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLIN 124
           VP ELPEPALGINFARDGMNR+DWL+LVAVH+DSWL+SVAFY  ARLNRN+RKRLF ++N
Sbjct: 81  VPTELPEPALGINFARDGMNRRDWLALVAVHSDSWLVSVAFYYAARLNRNDRKRLFGMMN 140

Query: 125 DQPTVFEVVTERKPIK--DKPSVDSSSKSRGSTK 156
           D PTV+EVV+  +  K  D+  +D+SS+++ S+K
Sbjct: 141 DLPTVYEVVSGSRQSKERDRSGMDNSSRNKISSK 174

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. indica GN=OsI_18576 PE=3 SV=1

 Score =  226 bits (575), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 133/154 (86%), Gaps = 2/154 (1%)

Query: 5   SSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEE 64
           S+PR+VE+I+KDF ARR  ++RALT+DV++FY  CDP+KENLCLYG+ NE+W+V LPAEE
Sbjct: 21  SAPRSVEDIFKDFRARRTAILRALTHDVEDFYAQCDPEKENLCLYGYANEAWQVALPAEE 80

Query: 65  VPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLIN 124
           VP ELPEPALGINFARDGMNR+DWL+LVAVH+DSWL+SVAFY  ARLNRN+RKRLF ++N
Sbjct: 81  VPTELPEPALGINFARDGMNRRDWLALVAVHSDSWLVSVAFYYAARLNRNDRKRLFGMMN 140

Query: 125 DQPTVFEVVTERKPIK--DKPSVDSSSKSRGSTK 156
           D PTV+EVV+  +  K  D+  +D+SS+++ S+K
Sbjct: 141 DLPTVYEVVSGSRQSKERDRSGMDNSSRNKISSK 174

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9FFF5|ALFL1_ARATH PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1

 Score =  221 bits (563), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 134/154 (87%), Gaps = 1/154 (0%)

Query: 4   ASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAE 63
           +S+PRTVEEI+KDF  RR+G +RAL+ DVD+FY LCDP+ ENLCLYGHPN +WEV LPAE
Sbjct: 5   SSNPRTVEEIFKDFSGRRSGFLRALSVDVDKFYSLCDPEMENLCLYGHPNGTWEVNLPAE 64

Query: 64  EVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLI 123
           EVPPELPEPALGINFARDGM RKDWLSLVAVH+D WLLSV+ Y GARLNRNERKRLFSLI
Sbjct: 65  EVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSSYFGARLNRNERKRLFSLI 124

Query: 124 NDQPTVFEVVTERKPIKD-KPSVDSSSKSRGSTK 156
           ND PT+FEVVT RKPIKD KPS+D  SKSR   K
Sbjct: 125 NDLPTLFEVVTGRKPIKDGKPSMDLGSKSRNGVK 158

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TV4|ALFL3_ORYSJ PHD finger protein ALFIN-LIKE 3 OS=Oryza sativa subsp. japonica GN=Os03g0818300 PE=2 SV=1

 Score =  220 bits (560), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/155 (74%), Positives = 137/155 (88%)

Query: 2   EMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLP 61
           ++AS+PRTVE+I+KD+ ARR  +VRALT+DVDEF+GLCDPDKENLCLYG  N SWEV LP
Sbjct: 8   QVASNPRTVEDIFKDYSARRGALVRALTSDVDEFFGLCDPDKENLCLYGLANGSWEVALP 67

Query: 62  AEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFS 121
           AEEVPPELPEPALGINFARDGMNR+DWLSLVAVH+DSWL+SVAF+  ARLN NERKRLF+
Sbjct: 68  AEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFFFAARLNGNERKRLFN 127

Query: 122 LINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTK 156
           +IND PTV+E + +RK ++D+  VDSS KS+ STK
Sbjct: 128 MINDLPTVYEALVDRKHVRDRSGVDSSGKSKHSTK 162

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8AMA8|ALFL3_ORYSI PHD finger protein ALFIN-LIKE 3 OS=Oryza sativa subsp. indica GN=OsI_14081 PE=3 SV=2

 Score =  220 bits (560), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/155 (74%), Positives = 137/155 (88%)

Query: 2   EMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLP 61
           ++AS+PRTVE+I+KD+ ARR  +VRALT+DVDEF+GLCDPDKENLCLYG  N SWEV LP
Sbjct: 8   QVASNPRTVEDIFKDYSARRGALVRALTSDVDEFFGLCDPDKENLCLYGLANGSWEVALP 67

Query: 62  AEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFS 121
           AEEVPPELPEPALGINFARDGMNR+DWLSLVAVH+DSWL+SVAF+  ARLN NERKRLF+
Sbjct: 68  AEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFFFAARLNGNERKRLFN 127

Query: 122 LINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTK 156
           +IND PTV+E + +RK ++D+  VDSS KS+ STK
Sbjct: 128 MINDLPTVYEALVDRKHVRDRSGVDSSGKSKHSTK 162

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8H383|ALFL2_ORYSJ PHD finger protein ALFIN-LIKE 2 OS=Oryza sativa subsp. japonica GN=Os07g0233300 PE=2 SV=1

 Score =  218 bits (554), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/161 (75%), Positives = 136/161 (84%), Gaps = 5/161 (3%)

Query: 1   MEMAS----SPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESW 56
           MEMA+    +PRTVE+I+KDF  RRAG+VRALT DVDEFYG CDP+KENLCLYGHPN  W
Sbjct: 1   MEMAAPVSPAPRTVEDIFKDFSGRRAGLVRALTVDVDEFYGFCDPEKENLCLYGHPNGRW 60

Query: 57  EVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNER 116
           EV LPAEEVPPELPEPALGINFARDGM+R+DWLSLVAVH+DSWLLSVAF+ GARLN NER
Sbjct: 61  EVALPAEEVPPELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFFFGARLNGNER 120

Query: 117 KRLFSLINDQPTVFEVVTERKPIKD-KPSVDSSSKSRGSTK 156
           KRLFSLIND PTV E +++RK  +D K   D+ SKSR S K
Sbjct: 121 KRLFSLINDHPTVLEALSDRKHGRDNKSGADNGSKSRHSGK 161

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8B8I3|ALFL2_ORYSI PHD finger protein ALFIN-LIKE 2 OS=Oryza sativa subsp. indica GN=OsI_25444 PE=3 SV=1

 Score =  218 bits (554), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/161 (75%), Positives = 136/161 (84%), Gaps = 5/161 (3%)

Query: 1   MEMAS----SPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESW 56
           MEMA+    +PRTVE+I+KDF  RRAG+VRALT DVDEFYG CDP+KENLCLYGHPN  W
Sbjct: 1   MEMAAPVSPAPRTVEDIFKDFSGRRAGLVRALTVDVDEFYGFCDPEKENLCLYGHPNGRW 60

Query: 57  EVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNER 116
           EV LPAEEVPPELPEPALGINFARDGM+R+DWLSLVAVH+DSWLLSVAF+ GARLN NER
Sbjct: 61  EVALPAEEVPPELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFFFGARLNGNER 120

Query: 117 KRLFSLINDQPTVFEVVTERKPIKD-KPSVDSSSKSRGSTK 156
           KRLFSLIND PTV E +++RK  +D K   D+ SKSR S K
Sbjct: 121 KRLFSLINDHPTVLEALSDRKHGRDNKSGADNGSKSRHSGK 161

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SRM4|ALFL2_ARATH PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana GN=AL2 PE=2 SV=1

 Score =  211 bits (538), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/155 (80%), Positives = 138/155 (89%), Gaps = 1/155 (0%)

Query: 3   MASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPA 62
           ++S+PRTVEEI+KD+ ARRA ++RALT DVD+FY  CDP+KENLCLYGHPNESWEV LPA
Sbjct: 6   VSSNPRTVEEIFKDYSARRAALLRALTKDVDDFYSQCDPEKENLCLYGHPNESWEVNLPA 65

Query: 63  EEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSL 122
           EEVPPELPEPALGINFARDGM RKDWLSLVAVH+D WLLSV+FY GARLNRNERKRLFSL
Sbjct: 66  EEVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSFYFGARLNRNERKRLFSL 125

Query: 123 INDQPTVFEVVTERKPIKD-KPSVDSSSKSRGSTK 156
           IND PT+F+VVT RK +KD KPS DS SKSR  TK
Sbjct: 126 INDLPTLFDVVTGRKAMKDNKPSSDSGSKSRNGTK 160

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4 OS=Oryza sativa subsp. japonica GN=Os04g0444900 PE=2 SV=2

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/149 (61%), Positives = 116/149 (77%), Gaps = 2/149 (1%)

Query: 8   RTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPP 67
           R+ E++++DFC RR+G+V+ALT +V++FY  CDP+KENLCLYG PN +W VTLPA+EVPP
Sbjct: 15  RSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPNGTWAVTLPADEVPP 74

Query: 68  ELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGAR--LNRNERKRLFSLIND 125
           ELPEPALGINFARDGM  KDWLSL+AVH+DSWLLSVAFY GAR   ++  R+RLF + + 
Sbjct: 75  ELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGFDKKARERLFMMTSS 134

Query: 126 QPTVFEVVTERKPIKDKPSVDSSSKSRGS 154
            PTVFEVV+     + K +  SS    GS
Sbjct: 135 LPTVFEVVSGGVNTQSKTANGSSKNKSGS 163

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XTW9|ALFL4_ORYSI PHD finger protein ALFIN-LIKE 4 OS=Oryza sativa subsp. indica GN=OsI_16049 PE=3 SV=1

 Score =  195 bits (496), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 91/149 (61%), Positives = 115/149 (77%), Gaps = 2/149 (1%)

Query: 8   RTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPP 67
           R+ E++++DFC RR+G+V+ALT +V++FY  CDP+KENLCLYG PN +W VTLPA+EVPP
Sbjct: 15  RSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPNGTWAVTLPADEVPP 74

Query: 68  ELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGAR--LNRNERKRLFSLIND 125
           ELPEPALG NFARDGM  KDWLSL+AVH+DSWLLSVAFY GAR   ++  R+RLF + + 
Sbjct: 75  ELPEPALGHNFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGFDKKARERLFMMTSS 134

Query: 126 QPTVFEVVTERKPIKDKPSVDSSSKSRGS 154
            PTVFEVV+     + K +  SS    GS
Sbjct: 135 LPTVFEVVSGGVNTQSKTANGSSKNKSGS 163

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
224087756	238	predicted protein [Populus trichocarpa]	0.993	0.655	0.916	3e-69
449524633	241	PREDICTED: PHD finger protein ALFIN-LIKE	0.980	0.639	0.805	5e-69
255574343	239	phd/F-box containing protein, putative [	0.993	0.652	0.897	6e-69
413968382	240	PHD finger protein alfin-like-1-like iso	0.993	0.65	0.884	1e-68
363806774	239	uncharacterized protein LOC100779170 [Gl	0.993	0.652	0.884	1e-68
358248172	238	uncharacterized protein LOC100793126 [Gl	0.993	0.655	0.884	1e-68
118482703	237	unknown [Populus trichocarpa]	0.993	0.658	0.903	2e-68
116563481	254	PHD4, partial [Medicago truncatula]	0.993	0.614	0.897	2e-68
388515281	238	unknown [Lotus japonicus]	0.980	0.647	0.909	2e-68
356568102	239	PREDICTED: PHD finger protein ALFIN-LIKE	1.0	0.656	0.866	1e-67

>gi|224087756|ref|XP_002308221.1| predicted protein [Populus trichocarpa] gi|118487534|gb|ABK95594.1| unknown [Populus trichocarpa] gi|222854197|gb|EEE91744.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 143/156 (91%), Positives = 148/156 (94%)

Query: 1   MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTL 60
           MEM SSPRTVEEI+KDF ARRA VVRALT DVD FYGLCDPDKENLCLYGHPNE+WEVTL
Sbjct: 1   MEMTSSPRTVEEIFKDFSARRAAVVRALTYDVDGFYGLCDPDKENLCLYGHPNETWEVTL 60

Query: 61  PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLF 120
           PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVH+DSWLLSVAFYLGARLNRNERKRLF
Sbjct: 61  PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLF 120

Query: 121 SLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTK 156
           SLIND PTVFEVVTERKP+K+KPSVDS SKSRGS K
Sbjct: 121 SLINDLPTVFEVVTERKPVKEKPSVDSGSKSRGSIK 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524633|ref|XP_004169326.1| PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cucumis sativus]

 Score =  265 bits (677), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 140/154 (90%)

Query: 3   MASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPA 62
           ++SSPR+VE+I+KD+ ARR G+VRALT DVDEFY LCDP+KENLCLYGHPNESWEVTLPA
Sbjct: 4   ISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPA 63

Query: 63  EEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSL 122
           EEVP ELPEPALGINFARDGM R+DWLSLVAVH+D WLLSVAFY GA+LNRNERKRLFS+
Sbjct: 64  EEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERKRLFSM 123

Query: 123 INDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTK 156
           IND PT+FEV + RK +KDKPS+DS SKSR STK
Sbjct: 124 INDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTK 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574343|ref|XP_002528085.1| phd/F-box containing protein, putative [Ricinus communis] gi|223532474|gb|EEF34264.1| phd/F-box containing protein, putative [Ricinus communis]

 Score =  265 bits (676), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 140/156 (89%), Positives = 149/156 (95%)

Query: 1   MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTL 60
           MEMASSPRTVEEI+KDF ARRAGVVRALT+DVDEFYGLCDP+KENLCLYGHPNESWEV L
Sbjct: 1   MEMASSPRTVEEIFKDFSARRAGVVRALTHDVDEFYGLCDPEKENLCLYGHPNESWEVNL 60

Query: 61  PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLF 120
           PAEEVPPELPEPALGINFARDGM+RKDWLSLVAVH+DSWL+SVAFY GARLNRNERKRLF
Sbjct: 61  PAEEVPPELPEPALGINFARDGMDRKDWLSLVAVHSDSWLISVAFYFGARLNRNERKRLF 120

Query: 121 SLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTK 156
           S+IND PTVFEVVTERK +K+KPSVDS SKSRGS K
Sbjct: 121 SMINDMPTVFEVVTERKVVKEKPSVDSGSKSRGSIK 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413968382|gb|AFW90529.1| PHD finger protein alfin-like-1-like isoform 1 [Phaseolus vulgaris]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/156 (88%), Positives = 151/156 (96%)

Query: 1   MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTL 60
           M+MASSPRTVEEI+KD+ ARR  V+RALT+DVDEFYGLCDPDK+NLCLYGHPNE+WEVTL
Sbjct: 1   MDMASSPRTVEEIFKDYSARRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTL 60

Query: 61  PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLF 120
           PAEEVPPELPEPALGINFARDGMNR+DWLSLVAVH+DSWL+SVAFYLGARLNRNERKRLF
Sbjct: 61  PAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLF 120

Query: 121 SLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTK 156
           SLIND P+VFEVVTERKP+KDKP+VDS SKSRGSTK
Sbjct: 121 SLINDLPSVFEVVTERKPVKDKPTVDSGSKSRGSTK 156

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806774|ref|NP_001242535.1| uncharacterized protein LOC100779170 [Glycine max] gi|255639560|gb|ACU20074.1| unknown [Glycine max]

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/156 (88%), Positives = 148/156 (94%)

Query: 1   MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTL 60
           MEMAS+PRTVEEI+KD+ ARR  +VRAL+ DVDEFYGLCDPDKENLCLYGHPNE+WEVTL
Sbjct: 1   MEMASTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTL 60

Query: 61  PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLF 120
           PAEEVPPELPEPALGINFARDGMNR+DWLSLVAVH+DSWLLSVAFYLGARLNRNERKRLF
Sbjct: 61  PAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLF 120

Query: 121 SLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTK 156
           SLIND PTVFEVVTERKP+KDKP+ DS SKSRG TK
Sbjct: 121 SLINDLPTVFEVVTERKPVKDKPTADSGSKSRGGTK 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248172|ref|NP_001239831.1| uncharacterized protein LOC100793126 [Glycine max] gi|255635147|gb|ACU17930.1| unknown [Glycine max]

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/156 (88%), Positives = 148/156 (94%)

Query: 1   MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTL 60
           MEM S+PRTVEEI+KD+ ARR  +VRAL+ DVDEFYGLCDPDKENLCLYGHPNE+WEVTL
Sbjct: 1   MEMTSTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTL 60

Query: 61  PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLF 120
           PAEEVPPELPEPALGINFARDGMNR+DWLSLVAVH+DSWLLSVAFYLGARLNRNERKRLF
Sbjct: 61  PAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLF 120

Query: 121 SLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTK 156
           SLIND PTVFEVVTERKP+KDKP+ DS SKSRGSTK
Sbjct: 121 SLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTK 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482703|gb|ABK93270.1| unknown [Populus trichocarpa]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/156 (90%), Positives = 148/156 (94%)

Query: 1   MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTL 60
           MEMASS RTVEEI+KDF ARRA VVRALT+DVD FYGLCDPDKENLCLYGHP+E+WEV L
Sbjct: 1   MEMASSARTVEEIFKDFSARRAAVVRALTHDVDAFYGLCDPDKENLCLYGHPSETWEVAL 60

Query: 61  PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLF 120
           PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVH+DSWLLSVAFYLGARLNRNERKRLF
Sbjct: 61  PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLF 120

Query: 121 SLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTK 156
           SLIND PTVFEVVTERKP+K+KPSVDS SKSRGS K
Sbjct: 121 SLINDLPTVFEVVTERKPVKEKPSVDSGSKSRGSIK 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116563481|gb|ABJ99761.1| PHD4, partial [Medicago truncatula]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/156 (89%), Positives = 149/156 (95%)

Query: 1   MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTL 60
           MEMASSPRTVEEI+KDF +RR G+VRALT DVDEFY LCDPDK+NLCLYGH NESWEVTL
Sbjct: 1   MEMASSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHTNESWEVTL 60

Query: 61  PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLF 120
           PAEEVPPELPEPALGINFARDGMNR+DWLSLVAVH+DSWLLSVAFYLGARLNRNERKRLF
Sbjct: 61  PAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLF 120

Query: 121 SLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTK 156
           SLIN+ PTVFEVVT+RKPIKDKP+VDS SKSRGSTK
Sbjct: 121 SLINELPTVFEVVTDRKPIKDKPTVDSGSKSRGSTK 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515281|gb|AFK45702.1| unknown [Lotus japonicus]

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/154 (90%), Positives = 147/154 (95%)

Query: 3   MASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPA 62
           MASSPRTVEEI+KD+ ARR  ++RALT DVDEFYGLCDPDKENLCLYGHPNESWEVTLPA
Sbjct: 1   MASSPRTVEEIFKDYTARRDAILRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPA 60

Query: 63  EEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSL 122
           EEVPPELPEPALGINFARDGMNR+DWLSLVAVH+DSWLLSVAFYLGARLNRNERKRLFSL
Sbjct: 61  EEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSL 120

Query: 123 INDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTK 156
           IND PTVFEVVTERKPIKDKP+VDS SKSRG TK
Sbjct: 121 INDLPTVFEVVTERKPIKDKPTVDSGSKSRGGTK 154

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568102|ref|XP_003552252.1| PREDICTED: PHD finger protein ALFIN-LIKE 1-like isoform 2 [Glycine max]

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/157 (86%), Positives = 150/157 (95%)

Query: 1   MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTL 60
           M+MASSPRTVEEI+KD+ ARR  V+RALT+DVDEFYGLCDPDK+NLCLYGHPNE+WEVTL
Sbjct: 1   MDMASSPRTVEEIFKDYGARRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTL 60

Query: 61  PAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLF 120
           PAEEVPPELPEPALGINFARDGMNR+DWLSLVAVH+DSWL+SVAFYLGARLNRNERKRLF
Sbjct: 61  PAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLF 120

Query: 121 SLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTKV 157
           SLIND P+VFEVVT+RKP+KDKP+ DS SKSRGS KV
Sbjct: 121 SLINDLPSVFEVVTDRKPVKDKPTADSGSKSRGSAKV 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2074663	246	AL2 "AT3G11200" [Arabidopsis t	0.853	0.544	0.694	3.3e-47
TAIR|locus:2169707	241	AL1 "AT5G05610" [Arabidopsis t	0.847	0.551	0.676	1.2e-44
TAIR|locus:2179709	255	AL4 "AT5G26210" [Arabidopsis t	0.828	0.509	0.598	4.2e-40
TAIR|locus:2012577	252	AL7 "AT1G14510" [Arabidopsis t	0.815	0.507	0.615	5.3e-40
TAIR|locus:2056281	256	AL6 "AT2G02470" [Arabidopsis t	0.815	0.5	0.615	8.7e-40
UNIPROTKB|Q40359	257	ALFIN-1 "PHD finger protein Al	0.815	0.498	0.607	2.9e-39
TAIR|locus:2099321	250	AL3 "AT3G42790" [Arabidopsis t	0.821	0.516	0.587	4.8e-39
TAIR|locus:2149867	260	AL5 "AT5G20510" [Arabidopsis t	0.821	0.496	0.580	2.1e-38

TAIR|locus:2074663 AL2 "AT3G11200" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 93/134 (69%), Positives = 106/134 (79%)

Query:     3 MASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXX 62
             ++S+PRTVEEI+KD+ ARRA ++RALT DVD+FY  CDP+KENLCLYGHPNESW      
Sbjct:     6 VSSNPRTVEEIFKDYSARRAALLRALTKDVDDFYSQCDPEKENLCLYGHPNESWEVNLPA 65

Query:    63 XXXXXXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSL 122
                         GINFARDGM RKDWLSLVAVH+D WLLSV+FY GARLNRNERKRLFSL
Sbjct:    66 EEVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSFYFGARLNRNERKRLFSL 125

Query:   123 INDQPTVFEVVTER 136
             IND PT+F+VVT R
Sbjct:   126 INDLPTLFDVVTGR 139

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007067 "mitosis" evidence=RCA

TAIR|locus:2169707 AL1 "AT5G05610" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 90/133 (67%), Positives = 102/133 (76%)

Query:     4 ASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXX 63
             +S+PRTVEEI+KDF  RR+G +RAL+ DVD+FY LCDP+ ENLCLYGHPN +W       
Sbjct:     5 SSNPRTVEEIFKDFSGRRSGFLRALSVDVDKFYSLCDPEMENLCLYGHPNGTWEVNLPAE 64

Query:    64 XXXXXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLI 123
                        GINFARDGM RKDWLSLVAVH+D WLLSV+ Y GARLNRNERKRLFSLI
Sbjct:    65 EVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSSYFGARLNRNERKRLFSLI 124

Query:   124 NDQPTVFEVVTER 136
             ND PT+FEVVT R
Sbjct:   125 NDLPTLFEVVTGR 137

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

TAIR|locus:2179709 AL4 "AT5G26210" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 79/132 (59%), Positives = 99/132 (75%)

Query:     4 ASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXX 63
             A +PRTVEE+++DF  RRAG+++ALT DV EF+ LCDP+KENLCLYGHPNE W       
Sbjct:     6 AYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAE 65

Query:    64 XXXXXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARL--NRNERKRLFS 121
                        GINFARDGM  KDWLSLVAVH+D+WLL+VAF+ GAR   ++ +RKRLF+
Sbjct:    66 EVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFN 125

Query:   122 LINDQPTVFEVV 133
             ++ND PT+FEVV
Sbjct:   126 MVNDLPTIFEVV 137

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2012577 AL7 "AT1G14510" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 80/130 (61%), Positives = 95/130 (73%)

Query:     7 PRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXXX 66
             PRTVEE++ DF  RRAG+++AL+ DV +FY  CDP+KENLCLYG PNE+W          
Sbjct:     9 PRTVEEVFSDFRGRRAGLIKALSTDVQKFYHQCDPEKENLCLYGLPNETWEVNLPVEEVP 68

Query:    67 XXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLN--RNERKRLFSLIN 124
                     GINFARDGM  KDW+SLVAVH+DSWL+SVAFY GAR    +NERKRLF +IN
Sbjct:    69 PELPEPALGINFARDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMIN 128

Query:   125 DQPTVFEVVT 134
             D PT+FEVVT
Sbjct:   129 DLPTIFEVVT 138

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

TAIR|locus:2056281 AL6 "AT2G02470" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 80/130 (61%), Positives = 96/130 (73%)

Query:     7 PRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXXX 66
             PRTVEE++ DF  RRAG+++ALTND+ +FY  CDP+KENLCLYG PNE+W          
Sbjct:     9 PRTVEEVFSDFRGRRAGLIKALTNDMVKFYQTCDPEKENLCLYGLPNETWEVNLPVEEVP 68

Query:    67 XXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLN--RNERKRLFSLIN 124
                     GINFARDGM  KDW+SLVAVH+DSWLLSVAFY GAR    +NERKRLF +IN
Sbjct:    69 PELPEPALGINFARDGMQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMIN 128

Query:   125 DQPTVFEVVT 134
             + PT+FEVV+
Sbjct:   129 ELPTIFEVVS 138

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q40359 ALFIN-1 "PHD finger protein Alfin1" [Medicago sativa (taxid:3879)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 79/130 (60%), Positives = 95/130 (73%)

Query:     7 PRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXXX 66
             PRTVEE++ D+  RRAG+++ALT DV++FY L DP+KENLCLYG PNE+W          
Sbjct:    10 PRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLVDPEKENLCLYGFPNETWEVNLPVEEVP 69

Query:    67 XXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLN--RNERKRLFSLIN 124
                     GINFARDGM  KDWLSLVAVH+DSWLL+VAFY GAR    +N+RKRLF +IN
Sbjct:    70 PELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMIN 129

Query:   125 DQPTVFEVVT 134
             D PTVFE+ T
Sbjct:   130 DLPTVFELAT 139

GO:0003677 "DNA binding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0045727 "positive regulation of translation" evidence=IDA

GO:0071472 "cellular response to salt stress" evidence=IDA

TAIR|locus:2099321 AL3 "AT3G42790" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 77/131 (58%), Positives = 96/131 (73%)

Query:     6 SPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXX 65
             +PRTVEE++KDF  RR  +V+ALT DV EFY  CDP+KENLCLYG PNE W         
Sbjct:     9 NPRTVEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEV 68

Query:    66 XXXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLN--RNERKRLFSLI 123
                      GINFARDG++ K+WLSLVA+H+D+WLLSV+FY G+R +  + ERKRLF++I
Sbjct:    69 PPELPEPALGINFARDGLSEKEWLSLVAIHSDAWLLSVSFYFGSRFSFHKEERKRLFNMI 128

Query:   124 NDQPTVFEVVT 134
             ND PT+FEVVT
Sbjct:   129 NDVPTIFEVVT 139

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

TAIR|locus:2149867 AL5 "AT5G20510" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 76/131 (58%), Positives = 98/131 (74%)

Query:     6 SPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXX 65
             SPRTVEE+++DF  RRAG+++ALT DV++F+  CDP+K+NLCLYG PNE W         
Sbjct:     9 SPRTVEEVFRDFKGRRAGIIQALTTDVEDFFQQCDPEKQNLCLYGFPNEVWEVNLPAEEV 68

Query:    66 XXXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARL--NRNERKRLFSLI 123
                      GINFARDGM  ++WLSLVAVH+D+WLLSV+FY G+R   +R +RKRLFS+I
Sbjct:    69 PPELPEPALGINFARDGMQERNWLSLVAVHSDAWLLSVSFYFGSRFGFDRADRKRLFSMI 128

Query:   124 NDQPTVFEVVT 134
             N+ PTV+EVVT
Sbjct:   129 NEVPTVYEVVT 139


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      157       118   0.00091  102 3  11 22  0.46    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  141 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.95u 0.12s 11.07t   Elapsed:  00:00:00
  Total cpu time:  10.95u 0.12s 11.07t   Elapsed:  00:00:00
  Start:  Sat May 11 07:03:24 2013   End:  Sat May 11 07:03:24 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B8B8I3	ALFL2_ORYSI	No assigned EC number	0.7515	0.9936	0.6393	N/A	no
B8AMA8	ALFL3_ORYSI	No assigned EC number	0.7419	0.9872	0.6275	N/A	no
Q9FFF5	ALFL1_ARATH	No assigned EC number	0.7857	0.9745	0.6348	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
pfam12165	137	pfam12165, DUF3594, Domain of unknown function (DU	3e-87

>gnl|CDD|221449 pfam12165, DUF3594, Domain of unknown function (DUF3594)

 Score =  250 bits (641), Expect = 3e-87
 Identities = 107/129 (82%), Positives = 116/129 (89%), Gaps = 2/129 (1%)

Query: 8   RTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPP 67
           RTVEEI+KDF ARRAG+V+ALT DV++FY  CDP+KENLCLYG PNESWEV LPAEEVPP
Sbjct: 1   RTVEEIFKDFKARRAGIVKALTTDVEDFYQQCDPEKENLCLYGLPNESWEVNLPAEEVPP 60

Query: 68  ELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGAR--LNRNERKRLFSLIND 125
           ELPEPALGINFARDGM  KDWLSLVAVH+DSWLLSVAFY GAR   NRN+RKRLFS+IND
Sbjct: 61  ELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFNRNDRKRLFSMIND 120

Query: 126 QPTVFEVVT 134
            PTVFEVVT
Sbjct: 121 LPTVFEVVT 129

This presumed domain is functionally uncharacterized.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00628. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PF12165	137	DUF3594: Domain of unknown function (DUF3594); Int	100.0
KOG1632	345	consensus Uncharacterized PHD Zn-finger protein [G	99.97

>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=4.1e-95  Score=567.28  Aligned_cols=129  Identities=82%  Similarity=1.410  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHhhhHHHHHHHhhhcHHHhhhcCCCCCCcceeccCCCCceeeeCCCCCCCCCCCCCccCccccCCCccccc
Q 031559            8 RTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRKD   87 (157)
Q Consensus         8 rTvE~iF~Df~~RR~glirALT~Dve~Fy~~CDP~kenLcLYG~p~~~WeV~lPaeevPpeLPEPalGINfaRDgM~rkd   87 (157)
                      ||||+||+||++||+|||||||+|||+||+||||+||||||||+|||+|||+||+||||||||||+||||||||||+|+|
T Consensus         1 rtve~if~df~~RR~g~v~ALT~dve~Fy~~CDP~kenLCLYG~p~~~WeV~lP~eevPpeLPEPaLGINfaRDgM~r~d   80 (137)
T PF12165_consen    1 RTVEEIFRDFSGRRAGIVRALTTDVEEFYQQCDPEKENLCLYGHPDGTWEVNLPAEEVPPELPEPALGINFARDGMQRKD   80 (137)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccceEEecCCCCCeEEeCChHhCCCCCCCcccCcccccCCccHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccchHHHHHHHHhhhc--CCchhhhHHHHhhhcCCceeeeeccc
Q 031559           88 WLSLVAVHTDSWLLSVAFYLGAR--LNRNERKRLFSLINDQPTVFEVVTER  136 (157)
Q Consensus        88 WLslVAvHSDsWLlsVAfy~gar--~~~~~R~rLF~mIN~lPTv~Evv~g~  136 (157)
                      |||||||||||||||||||||||  ||+++|+|||+|||+||||||+|+|+
T Consensus        81 WLslVAvHsDsWLlsvAfy~gar~~~~~~~R~rLF~mIN~lpTv~Evv~g~  131 (137)
T PF12165_consen   81 WLSLVAVHSDSWLLSVAFYFGARFGFDKNERKRLFSMINDLPTVFEVVTGR  131 (137)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhccChHHHHHHHHHHhcCchHHHHHhcc
Confidence            99999999999999999999999  79999999999999999999999994

This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.

>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]

Probab=99.97  E-value=1.2e-33  Score=242.62  Aligned_cols=152  Identities=40%  Similarity=0.555  Sum_probs=140.6

Q ss_pred             CCCCCHHHHHHHHhhhHHHHHHHhhhcHHHhhhcCCC----CCCcceeccCCCCceeeeCCCCCCCCCCCCCccCccccC
Q 031559            5 SSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDP----DKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFAR   80 (157)
Q Consensus         5 ~~prTvE~iF~Df~~RR~glirALT~Dve~Fy~~CDP----~kenLcLYG~p~~~WeV~lPaeevPpeLPEPalGINfaR   80 (157)
                      +.+++|+++|.+|++||++++.|+++++.+||.+|||    .++++|+|+++++.|+|++|++|+|+++++++.|||+++
T Consensus        35 ~~~~~~~~~~~~~k~~~~~~~~a~~~~~~~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~  114 (345)
T KOG1632|consen   35 PIERPVPDVFRGRKGRRGGLLKALTQRYCKCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQ  114 (345)
T ss_pred             CCCCCCcccccccccccccccHhhhhchhhcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhh
Confidence            6789999999999999999999999999999999999    689999999999999999999999999999999999999


Q ss_pred             CCccccchhhhhhhccchHHHHHHHHhhhcC-------CchhhhHHHHhhhcCCceeeeecccc----cCCCCCCCCCCC
Q 031559           81 DGMNRKDWLSLVAVHTDSWLLSVAFYLGARL-------NRNERKRLFSLINDQPTVFEVVTERK----PIKDKPSVDSSS  149 (157)
Q Consensus        81 DgM~rkdWLslVAvHSDsWLlsVAfy~gar~-------~~~~R~rLF~mIN~lPTv~Evv~g~k----~~k~~~~~~~~~  149 (157)
                      |||+.+|||+++++|+|+|+.+++||||+++       .+.+|+|++.++|++|||+++++|..    +.|.++++++++
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~t~~~~~~~~~~~~~~~k~~~~~~~~~  194 (345)
T KOG1632|consen  115 DGMSESDGLSCVCRQDDSELLSPSFYFGKRGCQFWVKLQKLGRVRLEAEKNDDPTVFEVVSGTATGELPSKDKSSNDRGS  194 (345)
T ss_pred             hhhhhhccceeecccccccccccccccCCccccccccchhhhhhhhhhhhcccchhhhcccccccccccccccccccccc
Confidence            9999999999999999999999999999995       89999999999999999999999933    556666666666


Q ss_pred             CCCCCCC
Q 031559          150 KSRGSTK  156 (157)
Q Consensus       150 ~~k~~~k  156 (157)
                      +++.+.+
T Consensus       195 ~~~~~~~  201 (345)
T KOG1632|consen  195 KSKTRKK  201 (345)
T ss_pred             eecccCc
Confidence            6555443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 46/146 (31%)

Query: 12  EIYKDF---C-----ARRAGVVRALTND-------VDEFYGLCDPDKENLCLYGHPNESW 56
           + +  F   C      R   V   L+               L   + ++L L       +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------KY 310

Query: 57  EVTLPAEEVPPELPEPALGIN------FA---RDGMNRKD-WLSLVAVHTDSWLLSVAFY 106
                 +  P +LP   L  N       A   RDG+   D W      H +   L+    
Sbjct: 311 -----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-----HVNCDKLTTIIE 360

Query: 107 LG-ARLNRNERKRLFSLINDQPTVFE 131
                L   E +++F    D+ +VF 
Sbjct: 361 SSLNVLEPAEYRKMF----DRLSVFP 382

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00