Citrus Sinensis ID: 031565

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVVFFFTVLCLYIC
cccHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEccccccccccccccccEEEEEEcccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccEEEEEEEEEEEEc
cccHHHHHHHHHHHHHHHccHHHHEcccccccccccccEEEEEEEccccccccccccEEEEEEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHEHHHHHHHHHcc
MTDHVQEQEMEIEALEAILMDEFkeihsgesglntsnqcfqvtlspqddeadestmppVELALIFShtekypdeppllnvkslrgiqaGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSErysqdagidntgeeelekdeVVFFFTVLCLYIC
MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNtgeeelekdevVFFFTVLCLYIC
MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVVFFFTVLCLYIC
****************AILM****************************************LALIFSHTE*******LLNVKSLRGIQAGDLKILKEKL*****ENLGMAMIYTLVTSAKEWLSERYSQ***********LEKDEVVFFFTVLCLYI*
*TDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLS**********************VFFFTVLCLYIC
********EMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLS**********MPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVVFFFTVLCLYIC
*TDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVVFFFTVLCLYIC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTDHxxxxxxxxxxxxxxxxxxxxxIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVVFFFTVLCLYIC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query157 2.2.26 [Sep-21-2011]
Q9CQK7243 RWD domain-containing pro yes no 0.745 0.481 0.390 9e-15
Q9H446243 RWD domain-containing pro yes no 0.745 0.481 0.382 2e-14
Q99ND9243 RWD domain-containing pro yes no 0.745 0.481 0.382 2e-14
Q9HGN1 1576 Serine/threonine-protein yes no 0.847 0.084 0.255 8e-06
Q9P2K8 1649 Eukaryotic translation in no no 0.738 0.070 0.285 9e-06
Q9QZR0 456 E3 ubiquitin-protein liga no no 0.687 0.236 0.298 1e-05
Q9QZ05 1648 Eukaryotic translation in no no 0.738 0.070 0.285 1e-05
Q5E9N3 458 E3 ubiquitin-protein liga no no 0.694 0.237 0.280 2e-05
Q96BH1 459 E3 ubiquitin-protein liga no no 0.694 0.237 0.298 4e-05
P15442 1659 Serine/threonine-protein yes no 0.694 0.065 0.269 7e-05
>sp|Q9CQK7|RWDD1_MOUSE RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1 Back     alignment and function desciption
 Score = 79.3 bits (194), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 11/128 (8%)

Query: 1   MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
           MTD+ +EQ  E+EALE+I  D F       + L+ S   F +T++ +  E DE+    V+
Sbjct: 1   MTDYGEEQRNELEALESIYPDSF-------TVLSESPPSFTITVTSEAGENDET----VQ 49

Query: 61  LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
             L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+ +E
Sbjct: 50  TTLKFTYSEKYPDETPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQE 109

Query: 121 WLSERYSQ 128
            L+E   Q
Sbjct: 110 KLNEIVDQ 117
Protects DRG2 from proteolytic degradation.
Mus musculus (taxid: 10090)
>sp|Q9H446|RWDD1_HUMAN RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1 Back     alignment and function description
>sp|Q99ND9|RWDD1_RAT RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2 SV=1 Back     alignment and function description
>sp|Q9HGN1|GCN2_SCHPO Serine/threonine-protein kinase gcn2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcn2 PE=2 SV=2 Back     alignment and function description
>sp|Q9P2K8|E2AK4_HUMAN Eukaryotic translation initiation factor 2-alpha kinase 4 OS=Homo sapiens GN=EIF2AK4 PE=1 SV=3 Back     alignment and function description
>sp|Q9QZR0|RNF25_MOUSE E3 ubiquitin-protein ligase RNF25 OS=Mus musculus GN=Rnf25 PE=1 SV=2 Back     alignment and function description
>sp|Q9QZ05|E2AK4_MOUSE Eukaryotic translation initiation factor 2-alpha kinase 4 OS=Mus musculus GN=Eif2ak4 PE=1 SV=2 Back     alignment and function description
>sp|Q5E9N3|RNF25_BOVIN E3 ubiquitin-protein ligase RNF25 OS=Bos taurus GN=RNF25 PE=2 SV=1 Back     alignment and function description
>sp|Q96BH1|RNF25_HUMAN E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens GN=RNF25 PE=1 SV=1 Back     alignment and function description
>sp|P15442|GCN2_YEAST Serine/threonine-protein kinase GCN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
224128650252 predicted protein [Populus trichocarpa] 0.929 0.579 0.794 2e-61
255549664253 rwd domain-containing protein, putative 0.929 0.577 0.787 3e-61
449447836255 PREDICTED: RWD domain-containing protein 0.929 0.572 0.767 2e-59
224059188252 predicted protein [Populus trichocarpa] 0.929 0.579 0.767 2e-57
225442349255 PREDICTED: RWD domain-containing protein 0.929 0.572 0.780 4e-57
363807786253 uncharacterized protein LOC100813322 [Gl 0.929 0.577 0.734 1e-54
15218023252 ubiquitin-conjugating enzyme-like protei 0.929 0.579 0.726 3e-54
297852898252 RWD domain-containing protein [Arabidops 0.815 0.507 0.789 5e-54
77999283254 RWD domain-containing protein [Solanum t 0.910 0.562 0.705 5e-53
297743115246 unnamed protein product [Vitis vinifera] 0.872 0.556 0.773 3e-52
>gi|224128650|ref|XP_002329056.1| predicted protein [Populus trichocarpa] gi|222839727|gb|EEE78050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/146 (79%), Positives = 130/146 (89%)

Query: 1   MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
           MTD+ QEQEMEIEALEAILMDEFKE+HS ESGLNTSN+CF +T+SPQDD+ DEST  PV+
Sbjct: 1   MTDYGQEQEMEIEALEAILMDEFKEVHSSESGLNTSNRCFLITISPQDDDTDESTDIPVQ 60

Query: 61  LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
           L L+FSHTEKYPDEPPLLNVKS+RGIQA DLK LKEKLEQEASENLGMAM+YTLVTSAKE
Sbjct: 61  LGLVFSHTEKYPDEPPLLNVKSIRGIQADDLKTLKEKLEQEASENLGMAMVYTLVTSAKE 120

Query: 121 WLSERYSQDAGIDNTGEEELEKDEVV 146
           WLSERYSQDA  ++   EE  KD+V+
Sbjct: 121 WLSERYSQDASNEDIENEEAAKDDVI 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255549664|ref|XP_002515883.1| rwd domain-containing protein, putative [Ricinus communis] gi|223544788|gb|EEF46303.1| rwd domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449447836|ref|XP_004141673.1| PREDICTED: RWD domain-containing protein 1-like [Cucumis sativus] gi|449480599|ref|XP_004155941.1| PREDICTED: RWD domain-containing protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224059188|ref|XP_002299758.1| predicted protein [Populus trichocarpa] gi|222847016|gb|EEE84563.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225442349|ref|XP_002281163.1| PREDICTED: RWD domain-containing protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|363807786|ref|NP_001241922.1| uncharacterized protein LOC100813322 [Glycine max] gi|255641328|gb|ACU20941.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15218023|ref|NP_175584.1| ubiquitin-conjugating enzyme-like protein [Arabidopsis thaliana] gi|12321663|gb|AAG50865.1|AC025294_3 unknown protein [Arabidopsis thaliana] gi|19698889|gb|AAL91180.1| unknown protein [Arabidopsis thaliana] gi|23198350|gb|AAN15702.1| unknown protein [Arabidopsis thaliana] gi|332194587|gb|AEE32708.1| ubiquitin-conjugating enzyme-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297852898|ref|XP_002894330.1| RWD domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297340172|gb|EFH70589.1| RWD domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|77999283|gb|ABB16988.1| RWD domain-containing protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|297743115|emb|CBI35982.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
TAIR|locus:2017532252 AT1G51730 [Arabidopsis thalian 0.929 0.579 0.726 1.9e-53
ZFIN|ZDB-GENE-040718-270240 rwdd1 "RWD domain containing 1 0.828 0.541 0.388 5.8e-18
MGI|MGI:1913771243 Rwdd1 "RWD domain containing 1 0.828 0.534 0.381 5.3e-17
UNIPROTKB|Q9H446243 RWDD1 "RWD domain-containing p 0.828 0.534 0.375 1.1e-16
WB|WBGene00012037240 T26E3.4 [Caenorhabditis elegan 0.853 0.558 0.319 7.9e-14
MGI|MGI:1353427 1648 Eif2ak4 "eukaryotic translatio 0.738 0.070 0.310 3.9e-08
ASPGD|ASPL0000014519236 AN3646 [Emericella nidulans (t 0.681 0.453 0.325 8.3e-08
UNIPROTKB|G4MRT5230 MGG_04566 "RWD domain-containi 0.662 0.452 0.330 1.3e-07
RGD|1311557 454 Rnf25 "ring finger protein 25" 0.687 0.237 0.298 1.3e-07
MGI|MGI:1890215 456 Rnf25 "ring finger protein 25" 0.687 0.236 0.298 1.7e-07
TAIR|locus:2017532 AT1G51730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 106/146 (72%), Positives = 124/146 (84%)

Query:     1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
             MT++ QEQEMEIEALEAILMDEFKEIHS ESGLNTSN+CFQ+T++PQDDE +E  +PPV+
Sbjct:     1 MTEYKQEQEMEIEALEAILMDEFKEIHSSESGLNTSNRCFQITVTPQDDELEELAIPPVQ 60

Query:    61 LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
             LAL+FSHTE YPDE PLL+VKS+RGI   DL ILKEKLEQEASENLGMAMIYTLV+SAK+
Sbjct:    61 LALVFSHTENYPDEAPLLDVKSIRGIHVSDLTILKEKLEQEASENLGMAMIYTLVSSAKD 120

Query:   121 WLSERYSQDAGIDNTGEEELEKDEVV 146
             WLSE Y QD   +    E  ++DEV+
Sbjct:   121 WLSEHYGQDDAAEFAEVEAAKEDEVI 146
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
ZFIN|ZDB-GENE-040718-270 rwdd1 "RWD domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1913771 Rwdd1 "RWD domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H446 RWDD1 "RWD domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00012037 T26E3.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:1353427 Eif2ak4 "eukaryotic translation initiation factor 2 alpha kinase 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000014519 AN3646 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MRT5 MGG_04566 "RWD domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
RGD|1311557 Rnf25 "ring finger protein 25" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1890215 Rnf25 "ring finger protein 25" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
pfam05773113 pfam05773, RWD, RWD domain 4e-25
smart00591107 smart00591, RWD, domain in RING finger and WD repe 5e-20
>gnl|CDD|218742 pfam05773, RWD, RWD domain Back     alignment and domain information 
 Score = 92.4 bits (230), Expect = 4e-25
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 3   DHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELA 62
           +  + QE E+EALE+I  DEF++         +S   F + L     EA+ S +  + L 
Sbjct: 1   ESKELQEEELEALESIYPDEFEDE-----VKESSPPTFTIKLKLLTSEAESSPLVSLVL- 54

Query: 63  LIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWL 122
             F+  E YPDEPP +++ S   ++  D   L ++LE+ A ENLG  MI+ L+   +E L
Sbjct: 55  -TFTLPEDYPDEPPKISLSSPWLLRDQDKLQLLKELEELAEENLGEVMIFELIEWLQENL 113

This domain was identified in WD40 repeat proteins and Ring finger domain proteins. The function of this domain is unknown. GCN2 is the alpha-subunit of the only translation initiation factor (eIF2 alpha) kinase that appears in all eukaryotes. Its function requires an interaction with GCN1 via the domain at its N-terminus, which is termed the RWD domain after three major RWD-containing proteins: RING finger-containing proteins, WD-repeat-containing proteins, and yeast DEAD (DEXD)-like helicases. The structure forms an alpha + beta sandwich fold consisting of two layers: a four-stranded antiparallel beta-sheet, and three side-by-side alpha-helices. Length = 113
>gnl|CDD|214735 smart00591, RWD, domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 157
smart00591107 RWD domain in RING finger and WD repeat containing 99.91
KOG4018215 consensus Uncharacterized conserved protein, conta 99.9
PF05773113 RWD: RWD domain; InterPro: IPR006575 The RWD eukar 99.89
KOG4445 368 consensus Uncharacterized conserved protein, conta 99.55
KOG1035 1351 consensus eIF-2alpha kinase GCN2 [Translation, rib 99.37
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 99.28
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 97.13
PTZ00390152 ubiquitin-conjugating enzyme; Provisional 96.12
KOG0416189 consensus Ubiquitin-protein ligase [Posttranslatio 95.64
cd00195141 UBCc Ubiquitin-conjugating enzyme E2, catalytic (U 95.23
PLN00172147 ubiquitin conjugating enzyme; Provisional 95.21
PF00179140 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP 94.87
COG5078153 Ubiquitin-protein ligase [Posttranslational modifi 94.77
smart00212145 UBCc Ubiquitin-conjugating enzyme E2, catalytic do 93.91
KOG0419152 consensus Ubiquitin-protein ligase [Posttranslatio 92.95
KOG0417148 consensus Ubiquitin-protein ligase [Posttranslatio 92.77
KOG0421175 consensus Ubiquitin-protein ligase [Posttranslatio 91.14
KOG0425171 consensus Ubiquitin-protein ligase [Posttranslatio 90.38
KOG0427161 consensus Ubiquitin conjugating enzyme [Posttransl 89.59
KOG0422153 consensus Ubiquitin-protein ligase [Posttranslatio 89.09
KOG0420184 consensus Ubiquitin-protein ligase [Posttranslatio 88.6
PF08694161 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1 86.87
PRK0222061 4-oxalocrotonate tautomerase; Provisional 85.8
KOG0418200 consensus Ubiquitin-protein ligase [Posttranslatio 85.55
KOG3299 206 consensus Uncharacterized conserved protein [Funct 85.07
PRK0228960 4-oxalocrotonate tautomerase; Provisional 84.05
PRK0074562 4-oxalocrotonate tautomerase; Provisional 83.78
KOG0424158 consensus Ubiquitin-protein ligase [Posttranslatio 82.89
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain Back     alignment and domain information 
Probab=99.91  E-value=2e-23  Score=145.91  Aligned_cols=106  Identities=39%  Similarity=0.563  Sum_probs=91.0

Q ss_pred             HHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEeccCCCCHHh
Q 031565           11 EIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGD   90 (157)
Q Consensus        11 EleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~   90 (157)
                      |++||+|||++++..++++.     ....|+|++++..+.   .....+++.|.|++|++||+.+|.+.+.+.+||++.+
T Consensus         1 EieaL~sIy~~~~~~~~~~~-----~~~~~~i~l~~~~~~---~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~~~l~~~~   72 (107)
T smart00591        1 ELEALESIYPEDFEVIDEDA-----RIPEITIKLSPSSDE---GEDQYVSLTLQVKLPENYPDEAPPISLLNSEGLSDEQ   72 (107)
T ss_pred             ChHHHHhhccceeEEecCCC-----CccEEEEEEecCCCC---CCccceEEEEEEECCCCCCCCCCCeEEECCCCCCHHH
Confidence            79999999999988776521     123788888766431   1235688999999999999999999999888999999


Q ss_pred             HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHH
Q 031565           91 LKILKEKLEQEASENLGMAMIYTLVTSAKEWLSE  124 (157)
Q Consensus        91 ~~~L~~~L~~~~~e~~G~~mIf~lie~~qe~L~~  124 (157)
                      +..|.+.|.+.++++.|++|||++++|+|+++.+
T Consensus        73 ~~~l~~~l~~~~~e~~g~~~if~~v~~~~e~l~~  106 (107)
T smart00591       73 LAELLKKLEEIAEENLGEVMIFELVEKLQEFLSE  106 (107)
T ss_pred             HHHHHHHHHHHHHHhCCCEEhhHHHHHHHHHHhc
Confidence            9999999999999999999999999999999975

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO) Back     alignment and domain information
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PTZ00390 ubiquitin-conjugating enzyme; Provisional Back     alignment and domain information
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain Back     alignment and domain information
>PLN00172 ubiquitin conjugating enzyme; Provisional Back     alignment and domain information
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] Back     alignment and domain information
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues Back     alignment and domain information
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes Back     alignment and domain information
>PRK02220 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3299 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK02289 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>PRK00745 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
2ebm_A128 Solution Structure Of The Rwd Domain Of Human Rwd D 1e-15
1ukx_A137 Solution Structure Of The Rwd Domain Of Mouse Gcn2 5e-07
2day_A128 Solution Structure Of The Rwd Domain Of Human Ring 7e-07
2dmf_A137 An Extended Conformation Of The Rwd Domain Of Human 1e-06
2yz0_A138 Solution Structure Of RwdGI DOMAIN OF SACCHAROMYCES 2e-06
>pdb|2EBM|A Chain A, Solution Structure Of The Rwd Domain Of Human Rwd Domain Containing Protein 1 Length = 128 Back     alignment and structure 
Iteration: 1

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 11/128 (8%)
Query: 1   MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
           MTD+ +EQ  E+EALE+I  D F       + L+ +   F +T++ +  E DE+    V+
Sbjct: 8   MTDYGEEQRNELEALESIYPDSF-------TVLSENPPSFTITVTSEAGENDET----VQ 56
Query: 61  LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
             L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+ +E
Sbjct: 57  TTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQE 116
Query: 121 WLSERYSQ 128
            L+E   Q
Sbjct: 117 KLNEIVDQ 124
>pdb|1UKX|A Chain A, Solution Structure Of The Rwd Domain Of Mouse Gcn2 Length = 137 Back     alignment and structure
>pdb|2DAY|A Chain A, Solution Structure Of The Rwd Domain Of Human Ring Finger Protein 25 Length = 128 Back     alignment and structure
>pdb|2DMF|A Chain A, An Extended Conformation Of The Rwd Domain Of Human Ring Finger Protein 25 Length = 137 Back     alignment and structure
>pdb|2YZ0|A Chain A, Solution Structure Of RwdGI DOMAIN OF SACCHAROMYCES Cerevisiae Gcn2 Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
1ukx_A137 GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple 7e-32
2day_A128 Ring finger protein 25; ligase, metal-binding, UB1 8e-28
2ebm_A128 RWD domain-containing protein 1; alpha+beta sandwi 2e-27
2ebk_A128 RWD domain-containing protein 3; alpha+beta sandwi 2e-26
2yz0_A138 Serine/threonine-protein kinase GCN2; A-B-B-B-B-A- 1e-25
2dax_A152 Protein C21ORF6; RWD domain, alpha+beta sandwich f 2e-07
2daw_A154 RWD domain containing protein 2; alpha+beta sandwi 3e-06
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 Length = 137 Back     alignment and structure
 Score =  110 bits (275), Expect = 7e-32
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 1   MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
           M  + Q Q+ E++ALEAI   +F+++     G         + L PQ    +E     V+
Sbjct: 8   MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEE---VYVQ 64

Query: 61  LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
           + L       YPD  P +++K+ +G+    + +LK  LE+ A +  G  MI+ L    + 
Sbjct: 65  VELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQS 124

Query: 121 WLSER 125
           +LSE 
Sbjct: 125 FLSEH 129
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A Length = 128 Back     alignment and structure
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} Length = 138 Back     alignment and structure
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3 Length = 152 Back     alignment and structure
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query157
2yz0_A138 Serine/threonine-protein kinase GCN2; A-B-B-B-B-A- 99.97
2ebm_A128 RWD domain-containing protein 1; alpha+beta sandwi 99.97
1ukx_A137 GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple 99.97
2ebk_A128 RWD domain-containing protein 3; alpha+beta sandwi 99.95
2day_A128 Ring finger protein 25; ligase, metal-binding, UB1 99.95
2dax_A152 Protein C21ORF6; RWD domain, alpha+beta sandwich f 99.93
2daw_A154 RWD domain containing protein 2; alpha+beta sandwi 99.92
2a7l_A136 Hypothetical ubiquitin-conjugating enzyme LOC55284 96.81
2fo3_A125 Ubiquitin-conjugating enzyme; SGC, UBC, structural 96.39
2h2y_A136 Ubiquitin-conjugating enzyme; structural genomics, 96.25
2aak_A152 UBC1, ubiquitin conjugating enzyme; ubiquitin conj 96.1
2bep_A159 Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 95.95
1ayz_A169 UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin 95.94
1wzv_A155 Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A 95.93
1zdn_A158 Ubiquitin-conjugating enzyme E2S; structural genom 95.88
2ayv_A166 Ubiquitin-conjugating enzyme E2; structural genomi 95.83
2e2c_A156 Ubiquitin conjugating enzyme; ubiquitin conjugatio 95.8
2c2v_B154 Ubiquitin-conjugating enzyme E2 N; chaperone, heat 95.78
1yrv_A169 Ubiquitin-conjugating ligase MGC351130; structural 95.67
2ucz_A165 UBC7, ubiquitin conjugating enzyme; ubiquitin conj 95.55
3rz3_A183 Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj 95.53
1jat_A155 Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig 95.53
2c4o_A165 Ubiquitin-conjugating enzyme E2 D2; thioesterifica 95.49
3bzh_A194 Ubiquitin-conjugating enzyme E2 E1; structural gen 95.43
1yh2_A169 HSPC150 protein similar to ubiquitin-conjugating e 95.43
1z2u_A150 Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro 95.42
4gpr_A151 Ubiquitin-conjugating enzyme family protein; ubiqu 95.36
2r0j_A149 Ubiquitin carrier protein; ubiquitin conjugating, 95.26
3h8k_A164 Ubiquitin-conjugating enzyme E2 G2; alpha beta, al 95.23
3fn1_B167 NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin 95.2
2pwq_A216 Ubiquitin conjugating enzyme; structural genomics 95.09
1fxt_A149 Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM 94.98
2awf_A172 Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co 94.89
3k9o_A201 Ubiquitin-conjugating enzyme E2 K; E2-25K, complex 94.83
2y9m_A172 Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra 94.82
1c4z_D154 UBCH7, ubiquitin conjugating enzyme E2; bilobal st 94.82
2grr_A161 Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj 94.76
2z5d_A179 Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig 94.67
2gjd_A157 Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT 94.67
4ds2_A167 Ubiquitin-conjugating enzyme E2, putative; structu 94.65
3o2u_A190 NEDD8-conjugating enzyme UBC12; E2 conjugase, liga 94.64
1y8x_A160 Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju 94.56
1i7k_A179 Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A 94.43
2f4w_A187 Ubiquitin-conjugating enzyme E2, J2; endoplasmic r 94.28
2a4d_A160 Ubiquitin-conjugating enzyme E2 variant 1; alterna 93.95
2f4z_A193 Tgtwinscan_2721 - E2 domain; ubiquitin conjugating 93.81
3rcz_B163 SUMO-conjugating enzyme UBC9; SUMO-like domain, pr 93.64
1jat_B138 Ubiquitin-conjugating enzyme variant MMS2; UEV, li 93.63
3kpa_A168 Probable ubiquitin fold modifier conjugating ENZY; 93.57
2onu_A152 Ubiquitin-conjugating enzyme, putative; UBC, plasm 93.55
2z6o_A172 UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p 93.5
2q0v_A156 Ubiquitin-conjugating enzyme E2, putative; malaria 93.49
3e46_A253 Ubiquitin-conjugating enzyme E2-25 kDa; huntington 93.36
1zuo_A186 Hypothetical protein LOC92912; ligase, ubiquitin-c 92.88
1yf9_A171 Ubiquitin carrier protein 4; SGPP, structural geno 92.38
1tte_A215 Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq 92.34
4ddg_A 399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 92.07
2nvu_C180 NEDD8-conjugating enzyme UBC12; multifunction macr 91.67
2hlw_A170 Ubiquitin-conjugating enzyme E2 variant 1; ubiquit 90.51
3ceg_A323 Baculoviral IAP repeat-containing protein 6; apopt 89.45
3r3q_A162 Suppressor protein STP22 of temperature-sensitive 83.5
2x4k_A63 4-oxalocrotonate tautomerase; isomerase; 1.10A {St 82.44
3abf_A64 4-oxalocrotonate tautomerase; isomerase; 1.94A {Th 82.31
3obq_A146 Tumor susceptibility gene 101 protein; protein tra 82.27
3m20_A62 4-oxalocrotonate tautomerase, putative; DMPI, ther 81.65
2opa_A61 Probable tautomerase YWHB; homohexamer, 4-oxalocro 80.39
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} Back     alignment and structure
Probab=99.97  E-value=4e-31  Score=193.14  Aligned_cols=126  Identities=23%  Similarity=0.387  Sum_probs=110.8

Q ss_pred             CCCcHHHHHHHHHHHHhhcCCceeecccCccCCCC-CCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcce
Q 031565            1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNT-SNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLN   79 (157)
Q Consensus         1 m~~~~e~q~eEleAL~SIY~d~~~~~~~~~~~~~~-~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~   79 (157)
                      ||+++++|++|++||+|||+|+|+.+++..++|+. .+..|+|+|++..+.     ...+.+.|+|++|++||+++|.|.
T Consensus         8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~-----~~~~~~~L~~~~p~~YP~~~P~i~   82 (138)
T 2yz0_A            8 LDQYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKE-----PVESSITLHFAMTPMYPYTAPEIE   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCS-----SCCCEEEEEEECCSSTTSSCCEEE
T ss_pred             ccchHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCC-----CCceEEEEEEECCCCCCCCCCeEE
Confidence            67899999999999999999999988876567763 367999999986432     235799999999999999999999


Q ss_pred             EeccCCCCHHhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCCC
Q 031565           80 VKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAG  131 (157)
Q Consensus        80 l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mIf~lie~~qe~L~~~~~~~~~  131 (157)
                      +.+.+||++.++..|++.|.+.|+++.|++|||+|++|+||+|.++.....|
T Consensus        83 l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~q~~~~~  134 (138)
T 2yz0_A           83 FKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEFQNVVNT  134 (138)
T ss_dssp             EECCCSCCSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             EecCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHHHHhhhc
Confidence            9988999999999999999999999999999999999999999999544444
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 Back     alignment and structure
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A Back     alignment and structure
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3 Back     alignment and structure
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3 Back     alignment and structure
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Back     alignment and structure
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Back     alignment and structure
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Back     alignment and structure
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Back     alignment and structure
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Back     alignment and structure
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Back     alignment and structure
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Back     alignment and structure
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Back     alignment and structure
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Back     alignment and structure
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Back     alignment and structure
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Back     alignment and structure
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica} Back     alignment and structure
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Back     alignment and structure
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A Back     alignment and structure
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Back     alignment and structure
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Back     alignment and structure
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Back     alignment and structure
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Back     alignment and structure
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Back     alignment and structure
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Back     alignment and structure
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Back     alignment and structure
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Back     alignment and structure
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Back     alignment and structure
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Back     alignment and structure
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Back     alignment and structure
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Back     alignment and structure
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Back     alignment and structure
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1 Back     alignment and structure
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Back     alignment and structure
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4 Back     alignment and structure
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Back     alignment and structure
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A Back     alignment and structure
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Back     alignment and structure
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Back     alignment and structure
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Back     alignment and structure
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Back     alignment and structure
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Back     alignment and structure
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Back     alignment and structure
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A* Back     alignment and structure
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus} Back     alignment and structure
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus} Back     alignment and structure
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Back     alignment and structure
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus} Back     alignment and structure
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 157
d1ukxa_137 d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like prote 2e-29
d2daya1115 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF 4e-22
d2daxa1140 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 3e-14
d2dawa1141 d.20.1.3 (A:8-148) RWD domain-containing protein 2 3e-11
>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 2e-29
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 1   MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
           M  + Q Q+ E++ALEAI   +F+++     G         + L PQ    +E     V+
Sbjct: 8   MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEE---VYVQ 64

Query: 61  LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
           + L       YPD  P +++K+ +G+    + +LK  LE+ A +  G  MI+ L    + 
Sbjct: 65  VELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQS 124

Query: 121 WLSER 125
           +LSE 
Sbjct: 125 FLSEH 129
>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 141 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query157
d1ukxa_137 EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu 99.97
d2daya1115 E3 ubiquitin-protein ligase RNF25 {Human (Homo sap 99.95
d2dawa1141 RWD domain-containing protein 2 {Human (Homo sapie 99.91
d2daxa1140 Uncharacterized protein C21orf6 {Human (Homo sapie 99.91
d2a7la1117 Ubiquitin-protein ligase W (E2 W) {Human (Homo sap 96.77
d2awfa1125 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 96.24
d2fo3a1109 Putative ubiquitin-conjugating enzyme, E2 domain { 96.06
d1yh2a1154 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 95.69
d2e2ca_156 Ubiquitin conjugating enzyme, UBC {Clam (Spisula s 95.61
d1z2ua1147 Ubiquitin conjugating enzyme, UBC {Caenorhabditis 95.45
d2bepa1154 Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain 95.31
d1y8xa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 95.24
d1yrva1148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 95.2
d1fzya_149 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 95.19
d1ayza_153 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 95.19
d1j7db_149 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 94.99
d1pzva_161 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 94.94
d1zdna1151 Ubiquitin conjugating enzyme, UBC {Human(Homo sapi 94.92
d2f4wa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 94.82
d1i7ka_146 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 94.78
d2ucza_164 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 94.75
d1jata_152 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 94.72
d1wzva1150 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 94.7
d2uyza1156 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 94.66
d2a4da1139 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 94.41
d1z3da1149 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 94.16
d1yf9a1158 Ubiquitin conjugating enzyme, UBC {Leishmania majo 93.96
d2z5da1152 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 93.91
d1c4zd_144 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 93.67
d1y6la_148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 93.51
d1zuoa1162 Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom 93.46
d1jatb_136 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 93.31
d2f4za1161 Hypothetical protein Tgtwinscan_2721, E2 domain {T 93.25
d1s1qa_141 Tumor susceptibility gene 101 (TSG101) {Human (Hom 88.34
d2in1a1162 Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie 87.19
d1uzxa_152 Vacuolar protein sorting-associated {Baker's yeast 83.59
>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.9e-31  Score=192.90  Aligned_cols=125  Identities=27%  Similarity=0.428  Sum_probs=110.9

Q ss_pred             CCCcHHHHHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceE
Q 031565            1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNV   80 (157)
Q Consensus         1 m~~~~e~q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l   80 (157)
                      |++|+|+|++|++||+|||+|+|+.+.+....+...+..|+|++.+...+.   ....+++.|.|+||++||.++|.+.+
T Consensus         8 ~~~~~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~~~i~L~~~lp~~YP~~~P~i~~   84 (137)
T d1ukxa_           8 MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAG---EEVYVQVELRVKCPPTYPDVVPEIDL   84 (137)
T ss_dssp             CCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCS---SSCSCEEEEEECCCTTTTSSCCCCEE
T ss_pred             cccHHHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCC---ccceEEEEEEEECCCCCCcccceEEE
Confidence            899999999999999999999999888765555555778999998865432   24568899999999999999999999


Q ss_pred             eccCCCCHHhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcC
Q 031565           81 KSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQ  128 (157)
Q Consensus        81 ~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mIf~lie~~qe~L~~~~~~  128 (157)
                      .+.+||++.++..|++.|.+.|+++.|++|||+||+|+||||++++..
T Consensus        85 ~~~~~l~~~~~~~L~~~l~~~~~e~~G~~mif~lv~~lqe~L~e~n~~  132 (137)
T d1ukxa_          85 KNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHNKS  132 (137)
T ss_dssp             EEEESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHCCC
T ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHcCCCEeHHHHHHHHHHHHHHhCCC
Confidence            988999999999999999999999999999999999999999998643
>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Back     information, alignment and structure
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Back     information, alignment and structure
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Back     information, alignment and structure
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Back     information, alignment and structure
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Back     information, alignment and structure
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Back     information, alignment and structure
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Back     information, alignment and structure
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Back     information, alignment and structure
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Back     information, alignment and structure
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Back     information, alignment and structure
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Back     information, alignment and structure
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Back     information, alignment and structure
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Back     information, alignment and structure
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Back     information, alignment and structure
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Back     information, alignment and structure
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Back     information, alignment and structure
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Back     information, alignment and structure
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Back     information, alignment and structure
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Back     information, alignment and structure
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Back     information, alignment and structure
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Back     information, alignment and structure
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Back     information, alignment and structure
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Back     information, alignment and structure
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure