Citrus Sinensis ID: 031597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDCKSSHAFS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEEEEEEHHHccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHcccccccccccccccccccccccccccccccccccccHHcccccccccEEEccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHEHHHHHHHHHHHHHHcccHHHHHHccccc
Coil and Loop (DISEMBL)
MAATAYAAvltprvpstttvkvksshcfalpclpprsstppfsssikqvsesrrfpllqvrassseetstvdaDELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVgainsvplLPKLLELIGLGYTGWFVYRYLLFKVRlrdcksshafs
Flexible Loop (DISEMBL)
maatayaavltprvpstttvkVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLqvrassseetstvdaDELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDCKSSHAFS
Low Complexity Region (SEG)
MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLpprsstppfsssIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVpllpklleliglgYTGWFVYRYLLFKVRLRDCKSSHAFS
Disordered region (IsUnstruct)
*****YAAVLTPRVPSTTTVKVKSSHCFALPCL*******************************************FSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDC*******
Disordered Region (DISOPRED)
**************************************************************************ELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDCKSSHAFS
Disordered Region (DISEMBL)
MAATAYAAVLTPRVP*********SHCFALPCLPPR**************ESRRFPLLQV***********DADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDCKSSHAFS
Disordered Region (DISPRO)
*********************************************************************TVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRL**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDCKSSHAFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
O04616	164	Uncharacterized protein A	yes	no	0.871	0.829	0.623	4e-44
Q8LCA1	174	Thylakoid membrane phosph	no	no	0.403	0.362	0.428	2e-11

>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1

 Score =  176 bits (447), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 114/146 (78%), Gaps = 10/146 (6%)

Query: 1   MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRS-STPPFSSSIKQVSES--RRFPL 57
           +AA++  AV+ PRVP+ +T       C A+P LPPRS     F+  +K VS +  ++  L
Sbjct: 5   VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58

Query: 58  LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
           L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV
Sbjct: 59  LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query: 118 PLLPKLLELIGLGYTGWFVYRYLLFK 143
           PLLPK++EL+GLGYTGWFVYRYLLFK
Sbjct: 118 PLLPKVMELVGLGYTGWFVYRYLLFK 143

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 45/63 (71%)

Query: 81  KEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYL 140
           +E W+ V++K  +       +VA+W S+ ++ AI+ +PL+P +LEL+G+GYTGWF Y+ L
Sbjct: 91  QEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNL 150

Query: 141 LFK 143
           +FK
Sbjct: 151 VFK 153

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
388500696	163	unknown [Lotus japonicus]	0.884	0.846	0.687	1e-46
224067952	155	predicted protein [Populus trichocarpa]	0.775	0.780	0.737	8e-46
351725951	163	uncharacterized protein LOC100305578 [Gl	0.833	0.797	0.688	4e-45
255541776	167	Thylakoid membrane phosphoprotein 14 kDa	0.769	0.718	0.735	8e-45
224130462	151	predicted protein [Populus trichocarpa]	0.775	0.801	0.722	5e-44
118487811	164	unknown [Populus trichocarpa]	0.769	0.731	0.728	1e-43
356560639	153	PREDICTED: uncharacterized protein At4g0	0.788	0.803	0.674	2e-43
356560637	163	PREDICTED: uncharacterized protein At4g0	0.833	0.797	0.659	5e-43
18411555	164	uncharacterized protein [Arabidopsis tha	0.871	0.829	0.623	2e-42
687677	164	unknown [Arabidopsis thaliana]	0.871	0.829	0.616	4e-42

>gi|388500696|gb|AFK38414.1| unknown [Lotus japonicus]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 117/147 (79%), Gaps = 9/147 (6%)

Query: 1   MAATAYAAVLTP-RVPSTTTVKVKSSHCFALPCLPPRSSTPP---FSSSIKQVSESRRFP 56
           MAA A + VL P R P+TT +    + C ALP LPPR ST     FS S+K  SESR+  
Sbjct: 1   MAAAAASTVLLPHRFPTTTNI----TRCSALPYLPPRVSTTTTTLFSPSLKHFSESRKPS 56

Query: 57  LLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINS 116
           LLQ RASS +ETS+VD +EL SDLKEKWDAVENKSTV++YGGGA+VAVWLSS +VGAINS
Sbjct: 57  LLQTRASS-DETSSVDTNELISDLKEKWDAVENKSTVIIYGGGALVAVWLSSILVGAINS 115

Query: 117 VPLLPKLLELIGLGYTGWFVYRYLLFK 143
           VPLLPK++EL+GLGYTGWFVYRYLLFK
Sbjct: 116 VPLLPKIMELVGLGYTGWFVYRYLLFK 142

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067952|ref|XP_002302615.1| predicted protein [Populus trichocarpa] gi|222844341|gb|EEE81888.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 106/122 (86%), Gaps = 1/122 (0%)

Query: 22  VKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLK 81
           +++S C ALPCLPPRSS+  F      +SES RF  LQ+RASSSEE+S VDA+E+F+DLK
Sbjct: 14  IRTSRCSALPCLPPRSSSRSFPIKHVSLSESHRFAPLQIRASSSEESS-VDANEVFTDLK 72

Query: 82  EKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141
           EKWDAVENKSTV+LYGGGAIV VWLSS ++GAINSVPLLPK++EL+GLGYTGWFVYRYLL
Sbjct: 73  EKWDAVENKSTVILYGGGAIVFVWLSSIVIGAINSVPLLPKIMELVGLGYTGWFVYRYLL 132

Query: 142 FK 143
           FK
Sbjct: 133 FK 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725951|ref|NP_001237366.1| uncharacterized protein LOC100305578 [Glycine max] gi|255625961|gb|ACU13325.1| unknown [Glycine max]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/138 (68%), Positives = 112/138 (81%), Gaps = 8/138 (5%)

Query: 9   VLTPRVPSTTTVKVKSSHCFALPCLPPRSS---TPPFSSSIKQVSESRRFPLLQVRASSS 65
           +L PR+P+TT V    + C ALP LPPR S   T  FS S+   S SR+  LLQ RA SS
Sbjct: 10  LLPPRIPTTTNV----TRCSALPSLPPRVSNTETTLFSPSLNNFSVSRKSSLLQTRA-SS 64

Query: 66  EETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLE 125
           EE+S+VDA+E+F+DLKEKWDA+ENKSTVLLYGGGAIVA+WLSS +V AINSVPLLPK++E
Sbjct: 65  EESSSVDANEVFTDLKEKWDALENKSTVLLYGGGAIVAIWLSSILVSAINSVPLLPKIME 124

Query: 126 LIGLGYTGWFVYRYLLFK 143
           L+GLGYTGWFVYRYLLFK
Sbjct: 125 LVGLGYTGWFVYRYLLFK 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541776|ref|XP_002511952.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis] gi|223549132|gb|EEF50621.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis]

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 104/121 (85%), Gaps = 1/121 (0%)

Query: 23  KSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKE 82
           +++ C ALP LPPR S+     SIKQVS SRR  LLQ+RASS EE++ VDA ELF+DLK 
Sbjct: 27  RTTRCSALPYLPPRLSSNSLRPSIKQVSASRRVSLLQIRASS-EESAPVDAGELFTDLKA 85

Query: 83  KWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLF 142
           +WDA+ENKSTV+LYGGGAIVAVWLSS +VGAINSVPLLPK++EL+GLGYTGWFVYRYLLF
Sbjct: 86  RWDALENKSTVVLYGGGAIVAVWLSSIVVGAINSVPLLPKIMELVGLGYTGWFVYRYLLF 145

Query: 143 K 143
           K
Sbjct: 146 K 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130462|ref|XP_002320843.1| predicted protein [Populus trichocarpa] gi|222861616|gb|EEE99158.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 108/126 (85%), Gaps = 5/126 (3%)

Query: 22  VKSSHCFALPCLPPRSSTPPFSSSIKQVS----ESRRFPLLQVRASSSEETSTVDADELF 77
           ++++ C+ALP LPPRSS+   S  IKQVS    ESRRF   Q RASSSEE S VDA+E+F
Sbjct: 6   IRATRCYALPYLPPRSSSSSQSFPIKQVSLTASESRRFAPFQTRASSSEE-SPVDANEIF 64

Query: 78  SDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVY 137
           +DLKEKWDAVENKSTV++YGGGA+VAVWLSS ++GA+NSVPLLPK+LEL+GLGYTGWFVY
Sbjct: 65  TDLKEKWDAVENKSTVIIYGGGAVVAVWLSSILIGAVNSVPLLPKILELVGLGYTGWFVY 124

Query: 138 RYLLFK 143
           RYLLFK
Sbjct: 125 RYLLFK 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487811|gb|ABK95729.1| unknown [Populus trichocarpa]

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/125 (72%), Positives = 107/125 (85%), Gaps = 5/125 (4%)

Query: 23  KSSHCFALPCLPPRSSTPPFSSSIKQVS----ESRRFPLLQVRASSSEETSTVDADELFS 78
           +++ C+ALP LPPRSS+   S  IKQVS    ESRRF   Q RASSSEE S VDA+E+F+
Sbjct: 20  RATRCYALPYLPPRSSSSSQSFPIKQVSLTASESRRFAPFQTRASSSEE-SPVDANEIFT 78

Query: 79  DLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYR 138
           DLKEKWDAVENKSTV++YGGGA+VAVWLSS ++GA+NSVPLLPK+LEL+GLGYTGWFVYR
Sbjct: 79  DLKEKWDAVENKSTVIIYGGGAVVAVWLSSILIGAVNSVPLLPKILELVGLGYTGWFVYR 138

Query: 139 YLLFK 143
           YLLFK
Sbjct: 139 YLLFK 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560639|ref|XP_003548598.1| PREDICTED: uncharacterized protein At4g01150, chloroplastic-like [Glycine max]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/135 (67%), Positives = 108/135 (80%), Gaps = 12/135 (8%)

Query: 9   VLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEET 68
           +L PR+P+ T V    + C ALP LPPR+S  PFS        SR+  LLQ RA SSEE+
Sbjct: 10  LLPPRIPTATNV----TRCSALPSLPPRASISPFSV-------SRKSSLLQTRA-SSEES 57

Query: 69  STVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIG 128
           S+VDA+E+F+DLKEKWDA+ENKSTVL YGGGA+VAVWLSS +V AINSVPLLPK++EL+G
Sbjct: 58  SSVDANEVFTDLKEKWDALENKSTVLFYGGGALVAVWLSSILVSAINSVPLLPKIMELVG 117

Query: 129 LGYTGWFVYRYLLFK 143
           LGYTGWFVYRYLLFK
Sbjct: 118 LGYTGWFVYRYLLFK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560637|ref|XP_003548597.1| PREDICTED: uncharacterized protein At4g01150, chloroplastic-like [Glycine max]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 109/138 (78%), Gaps = 8/138 (5%)

Query: 9   VLTPRVPSTTTVKVKSSHCFALPCLPPRSS---TPPFSSSIKQVSESRRFPLLQVRASSS 65
           +L PR+P+ T V    + C ALP LPPR +   T    SS+   S SR+  LLQ RA SS
Sbjct: 10  LLPPRIPTATNV----TRCSALPSLPPRGTNTKTTLLLSSLNHFSVSRKSSLLQTRA-SS 64

Query: 66  EETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLE 125
           EE+S+VDA+E+F+DLKEKWDA+ENKSTVL YGGGA+VAVWLSS +V AINSVPLLPK++E
Sbjct: 65  EESSSVDANEVFTDLKEKWDALENKSTVLFYGGGALVAVWLSSILVSAINSVPLLPKIME 124

Query: 126 LIGLGYTGWFVYRYLLFK 143
           L+GLGYTGWFVYRYLLFK
Sbjct: 125 LVGLGYTGWFVYRYLLFK 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411555|ref|NP_567210.1| uncharacterized protein [Arabidopsis thaliana] gi|75097110|sp|O04616.1|Y4115_ARATH RecName: Full=Uncharacterized protein At4g01150, chloroplastic; Flags: Precursor gi|14488088|gb|AAK63864.1|AF389292_1 AT4g01150/F2N1_18 [Arabidopsis thaliana] gi|2191138|gb|AAB61025.1| A_IG002N01.18 gene product [Arabidopsis thaliana] gi|7267612|emb|CAB80924.1| hypothetical protein [Arabidopsis thaliana] gi|20147123|gb|AAM10278.1| AT4g01150/F2N1_18 [Arabidopsis thaliana] gi|332656587|gb|AEE81987.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 114/146 (78%), Gaps = 10/146 (6%)

Query: 1   MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRS-STPPFSSSIKQVSES--RRFPL 57
           +AA++  AV+ PRVP+ +T       C A+P LPPRS     F+  +K VS +  ++  L
Sbjct: 5   VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58

Query: 58  LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
           L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV
Sbjct: 59  LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query: 118 PLLPKLLELIGLGYTGWFVYRYLLFK 143
           PLLPK++EL+GLGYTGWFVYRYLLFK
Sbjct: 118 PLLPKVMELVGLGYTGWFVYRYLLFK 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|687677|gb|AAB00107.1| unknown [Arabidopsis thaliana]

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 114/146 (78%), Gaps = 10/146 (6%)

Query: 1   MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRS-STPPFSSSIKQVSES--RRFPL 57
           +AA++  AV+ PRVP+ +T       C A+P LPPRS     F+  +K VS +  ++  L
Sbjct: 5   VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58

Query: 58  LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
           L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVW+SS +VGAINSV
Sbjct: 59  LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWVSSIVVGAINSV 117

Query: 118 PLLPKLLELIGLGYTGWFVYRYLLFK 143
           PLLPK++EL+GLGYTGWFVYRYLLFK
Sbjct: 118 PLLPKVMELVGLGYTGWFVYRYLLFK 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2125018	164	AT4G01150 "AT4G01150" [Arabido	0.871	0.829	0.520	4.9e-30
TAIR|locus:2037435	156	AT1G52220 "AT1G52220" [Arabido	0.544	0.544	0.325	1.2e-08
TAIR|locus:2121065	193	AT4G38100 [Arabidopsis thalian	0.551	0.445	0.366	5.3e-08
TAIR|locus:2044335	174	PSI-P "photosystem I P subunit	0.916	0.821	0.2	2.9e-07

TAIR|locus:2125018 AT4G01150 "AT4G01150" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 76/146 (52%), Positives = 95/146 (65%)

Query:     1 MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLXXXXXXXXXXXX-IKQVSES--RRFPL 57
             +AA++  AV+ PRVP+ +T       C A+P L             +K VS +  ++  L
Sbjct:     5 VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58

Query:    58 LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
             L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV
Sbjct:    59 LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query:   118 XXXXXXXXXXXXXYTGWFVYRYLLFK 143
                          YTGWFVYRYLLFK
Sbjct:   118 PLLPKVMELVGLGYTGWFVYRYLLFK 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2037435 AT1G52220 "AT1G52220" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 28/86 (32%), Positives = 44/86 (51%)

Query:    58 LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
             L V+AS     S+ D D + S ++  WD  E++  ++  G   IVA+W S  ++ AI+ +
Sbjct:    52 LMVKASGESSDSSTDLD-VVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKL 110

Query:   118 XXXXXXXXXXXXXYTGWFVYRYLLFK 143
                          ++ WF YRYLLFK
Sbjct:   111 PVISSGFELVGILFSTWFTYRYLLFK 136

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2121065 AT4G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 33/90 (36%), Positives = 49/90 (54%)

Query:    62 ASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVXXXX 121
             A  +E+  T  A E  +D+K   D+ +  S +LLYG GAIVA++L+S IV ++ ++    
Sbjct:    93 APQAEDEET-QALEFLNDIK--LDSDKTYS-ILLYGSGAIVALYLTSAIVSSLEAIPLFP 148

Query:   122 XXXXXXXXXYTGWFVYRYLLFKVRLRDCKS 151
                      YT WF  RYLLFK    + K+
Sbjct:   149 KLMEVVGLGYTLWFTTRYLLFKRNREELKT 178

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2044335 PSI-P "photosystem I P subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 30/150 (20%), Positives = 64/150 (42%)

Query:     1 MAATAYAAVLTPRVPST--TTVKVKSSHCFALPCL--XXXXXXXXXXXXIKQVSES---R 53
             ++ ++ + ++  R P +   +    S  C +LP L               +++  +   R
Sbjct:     4 LSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVVTR 63

Query:    54 RFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGA 113
                 +    +++ E  T +  E+    +E W+ V++K  +       +VA+W S+ ++ A
Sbjct:    64 ATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISA 123

Query:   114 INSVXXXXXXXXXXXXXYTGWFVYRYLLFK 143
             I+ +             YTGWF Y+ L+FK
Sbjct:   124 IDRLPLVPGVLELVGIGYTGWFTYKNLVFK 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.129   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       131   0.00091  102 3  11 22  0.37    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  131 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.10u 0.09s 11.19t   Elapsed:  00:00:01
  Total cpu time:  11.10u 0.09s 11.19t   Elapsed:  00:00:01
  Start:  Mon May 20 22:23:15 2013   End:  Mon May 20 22:23:16 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=ISS;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IDA

GO:0030093 "chloroplast photosystem I" evidence=IMP;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04616	Y4115_ARATH	No assigned EC number	0.6232	0.8717	0.8292	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.II.1221.1	hypothetical protein (155 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00020518	SubName- Full=Putative uncharacterized protein; (262 aa)			•	•					0.521
	estExt_fgenesh4_pg.C_LG_V1224	SubName- Full=Putative uncharacterized protein; (262 aa)			•	•					0.520
	gw1.I.6006.1	hypothetical protein (200 aa)			•	•					0.517
	estExt_fgenesh4_pg.C_LG_II2395	SubName- Full=Putative uncharacterized protein; (210 aa)			•				•		0.508
	eugene3.00090150	hypothetical protein (129 aa)			•	•					0.508
	gw1.XV.3200.1	hypothetical protein (265 aa)			•						0.506
	gw1.XIII.568.1	SubName- Full=Putative uncharacterized protein; (212 aa)			•						0.506
	gw1.X.3020.1	hypothetical protein (83 aa)			•						0.506
	gw1.VIII.1629.1	hypothetical protein (88 aa)			•						0.506
	gw1.III.1425.1	hypothetical protein (172 aa)			•						0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
pfam14159	90	pfam14159, DUF4308, Domain of unknown function (DU	8e-29
PLN02777	167	PLN02777, PLN02777, photosystem I P subunit (PSI-P	1e-19

>gnl|CDD|222574 pfam14159, DUF4308, Domain of unknown function (DUF4308)

 Score =  101 bits (253), Expect = 8e-29
 Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 77  FSDLKEKWDAVENKSTVLLYGGGAI----VAVWLSSTIVGAINSVPLLPKLLELIGLGYT 132
              L   W   E+K    L G GAI    VA+WLS+ ++ AI+S+PLLP LLEL+GLGY+
Sbjct: 1   LKKLPNYWGKFEDKYKRPLLGVGAIIAVIVALWLSAAVLDAIDSIPLLPGLLELVGLGYS 60

Query: 133 GWFVYRYLLFK 143
           GWFVYRYLLF 
Sbjct: 61  GWFVYRYLLFS 71

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 90 amino acids in length. The domain is found in several amino-acyl tRNA synthetase enzymes as well as in isolation in single domain proteins. Length = 90

>gnl|CDD|178376 PLN02777, PLN02777, photosystem I P subunit (PSI-P)

 Score = 80.0 bits (197), Expect = 1e-19
 Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 4/125 (3%)

Query: 22  VKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSE---ETSTVDADELFS 78
             S  C +LP LPP       +   K  +  R+     V  ++ E   E  T +  E+  
Sbjct: 23  AASPQCVSLPTLPP-PPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVK 81

Query: 79  DLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYR 138
            ++E WD VE+K  V       +VA+W S+ ++ AI+ +PL+P +LEL+G+GYTGWF Y+
Sbjct: 82  TVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYK 141

Query: 139 YLLFK 143
            L+FK
Sbjct: 142 NLVFK 146

Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PLN02777	167	photosystem I P subunit (PSI-P)	100.0
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	99.95

>PLN02777 photosystem I P subunit (PSI-P)

Probab=100.00  E-value=1.7e-42  Score=278.27  Aligned_cols=142  Identities=30%  Similarity=0.623  Sum_probs=119.2

Q ss_pred             hhhhCCCCcccccccccccccccccCCCCCC----CCCCCCCccccccccCccceeeeecccC--CCCCccchhHHHHHH
Q 031597            7 AAVLTPRVPSTTTVKVKSSHCFALPCLPPRS----STPPFSSSIKQVSESRRFPLLQVRASSS--EETSTVDADELFSDL   80 (156)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~lp~lp~R~----~~~~~~~~~~~~~~s~~~~~l~vrass~--~esss~~~~Ei~~~l   80 (156)
                      ..+....-|....  +++++|+.+|.|||.+    .++++++.||++..++.+++    |+++  ++.++.+.+|+++++
T Consensus        10 ~~~~~~~~~~~~~--a~~~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv~~----a~ge~s~~~~~~~~~ei~k~~   83 (167)
T PLN02777         10 STLIDSKAPRSSA--AASPQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTM----ATGEAPAEVETTELPEIVKTV   83 (167)
T ss_pred             cccccCCCCCcCc--ccCCccccCCCCCCCCcccCCCcchhHHHHHHhHHHHHHH----hccCCCcccccccHHHHHHHH
Confidence            3344444444332  3469999999999755    36788999999998886554    4442  333455778999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHhhhheehhhhhhhccchhhHhhhhhcc
Q 031597           81 KEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDCKSSHA  154 (156)
Q Consensus        81 ~e~Wd~~e~k~~vl~~g~gaival~v~~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl~~~~R~eL~~~~~  154 (156)
                      ||+||++|||++++++++++||++|++.+||+|||+|||+|++||||||||++||+||||+|++|||||++++.
T Consensus        84 ~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~  157 (167)
T PLN02777         84 QEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIK  157 (167)
T ss_pred             HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999874

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=99.95  E-value=1.2e-28  Score=180.28  Aligned_cols=77  Identities=49%  Similarity=0.855  Sum_probs=66.3

Q ss_pred             HHHHHHHHhcccchhhHHHH----HHHHHHHHHHHHHHHHhhccCChhhHHHHHhhhheehhhhhhhccchhhHhhhhhc
Q 031597           78 SDLKEKWDAVENKSTVLLYG----GGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDCKSSH  153 (156)
Q Consensus        78 ~~l~e~Wd~~e~k~~vl~~g----~gaival~v~~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl~~~~R~eL~~~~  153 (156)
                      ++++++|++.++++....++    +++++++|++.++++|||+||++|++|||||+||++||+||||++++|||||.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i   81 (90)
T PF14159_consen    2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI   81 (90)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence            45666666666666544444    55699999999999999999999999999999999999999999999999999987


Q ss_pred             c
Q 031597          154 A  154 (156)
Q Consensus       154 ~  154 (156)
                      .
T Consensus        82 ~   82 (90)
T PF14159_consen   82 Q   82 (90)
T ss_pred             H
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00