Citrus Sinensis ID: 031615

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL
Secondary Structure (PSIPRED)
cccccHHHHHccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccEEEEEcccccHHHHHHHHHHHcccccccccEEEEEEEEEccccccEEEEEEEEEcccccccccccccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccHccccccccccccccccccccccccccccccccccccEEEEEEEEccccccHHHHccccccccccEEEEEcccccHHHHHHHHHHHcHHHcccccEEEEEEEEccccccEEEEEEEEEEEccccccccccccHHHccEEEccEEEEEEc
Coil and Loop (DISEMBL)
magvgeaqrrqagrsrplhpsgrgpppppprprfepvdrektcPLLLRVFTKIgghhsredfavrgkepkdevqiytwkDATLRELTDLVKEVAPAARRRDARLSFAfvypdkngrfMVREVGKtfsyegrrqlddGKMLAELGFEIGDYLDVAIL
Flexible Loop (DISEMBL)
magvgeaqrrqagrsrplhpsgrgpppppprPRFEPVDREKTCPLLLRVFTKigghhsredfavrgkepkdevqiytwkdatlreLTDLVKEvapaarrrdarlsfafvypdkngrfmVREVGktfsyegrrqlddGKMLAELGFEIGDYLDVAIL
Low Complexity Region (SEG)
MAGVGEAQRRQAgrsrplhpsgrgpppppprprFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL
Disordered region (IsUnstruct)
*****************************************TCPLLLRVFTKIGGHHSREDFAVRG***KDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI*
Disordered Region (DISOPRED)
****************************************KTCPLLLRVFTKIGGHHSR**********KDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFS***********MLAELGFEIGDYLDVAIL
Disordered Region (DISEMBL)
********************************RFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL
Disordered Region (DISPRO)
*********************************FEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
O64644	152	Histone deacetylase compl	yes	no	0.814	0.835	0.787	8e-54
Q3T022	153	Histone deacetylase compl	no	no	0.762	0.777	0.549	2e-30
Q5RDT5	153	Histone deacetylase compl	yes	no	0.762	0.777	0.549	2e-30
O00422	153	Histone deacetylase compl	no	no	0.762	0.777	0.549	2e-30
O55128	153	Histone deacetylase compl	no	no	0.762	0.777	0.549	2e-30
Q9VEX9	150	Histone deacetylase compl	yes	no	0.782	0.813	0.468	6e-29
Q09250	166	Probable histone deacetyl	yes	no	0.762	0.716	0.459	4e-25

>sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1

 Score =  209 bits (531), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 100/127 (78%), Positives = 112/127 (88%)

Query: 29  PPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTD 88
           PPRP+ EPVDREKTCPLLLRVFTK GGHH+ ED+AVRGKEPKDEVQIYTWKDA+LRELTD
Sbjct: 25  PPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTD 84

Query: 89  LVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIG 148
           LVKEV+ AARRR+ARLSFAFVYP+  G + VREVG+T +Y  R+Q DD K L+EL FEIG
Sbjct: 85  LVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIG 144

Query: 149 DYLDVAI 155
           DYLDVAI
Sbjct: 145 DYLDVAI 151

Links the histone deacetylase complex to transcriptional repressors bound to chromatin. Involved in the tethering of the SIN3 complex to core histone proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3T022|SAP18_BOVIN Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
           P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135

Query: 154 AI 155
           AI
Sbjct: 136 AI 137

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Bos taurus (taxid: 9913)

>sp|Q5RDT5|SAP18_PONAB Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
           P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135

Query: 154 AI 155
           AI
Sbjct: 136 AI 137

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Pongo abelii (taxid: 9601)

>sp|O00422|SAP18_HUMAN Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
           P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135

Query: 154 AI 155
           AI
Sbjct: 136 AI 137

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Homo sapiens (taxid: 9606)

>sp|O55128|SAP18_MOUSE Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
           P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135

Query: 154 AI 155
           AI
Sbjct: 136 AI 137

Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism.

Mus musculus (taxid: 10090)

>sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1

 Score =  126 bits (316), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 86/126 (68%), Gaps = 4/126 (3%)

Query: 31  RPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLV 90
           + + + +DREKTCP+LLRVF   G HHS  ++   G  P +E+QIYTW+DATL ELT LV
Sbjct: 12  KTQVKQIDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLV 70

Query: 91  KEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGD 149
           ++V P  R++     FA VYP+ ++  F +RE+G T +  G++ +DD K LA+  F IGD
Sbjct: 71  RDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCT--GQKGIDDNKTLAQAKFSIGD 128

Query: 150 YLDVAI 155
           +LD++I
Sbjct: 129 FLDISI 134

Involved in the tethering of the SIN3 complex to core histone proteins. Interacts with bicoid (bcd) to repress transcription of bicoid target genes in the anterior tip of the embryo; a process known as retraction. Interacts with Trl and binds to Polycomb response elements at the bithorax complex. May contribute to the regulation of other homeotic gene expressions.

Drosophila melanogaster (taxid: 7227)

>sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=3 SV=1

 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 80/124 (64%), Gaps = 5/124 (4%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVR--GKEPKDEVQIYTWKDATLRELTDLVKE 92
           +P+DREK CP+LLRVF     H+   ++  R  G  P  E+Q++TW D +LRELT L+KE
Sbjct: 16  KPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLRELTSLIKE 75

Query: 93  VAPAARRRDARLSFAFVYPDKNG-RFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151
           V P ARR+     FA V  D+   R+++R+VG T +  G R +DD K L +  FE+GD++
Sbjct: 76  VNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTTN--GERGIDDNKTLQQCKFEVGDFV 133

Query: 152 DVAI 155
           DVAI
Sbjct: 134 DVAI 137

Acts in transcription repression. Involved in the tethering of the SIN3 complex to core histone proteins.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
449460459	166	PREDICTED: histone deacetylase complex s	0.987	0.927	0.748	3e-58
225453837	152	PREDICTED: histone deacetylase complex s	0.801	0.822	0.896	8e-57
351724413	151	uncharacterized protein LOC100526922 [Gl	0.782	0.807	0.886	2e-55
449432217	148	PREDICTED: histone deacetylase complex s	0.929	0.979	0.723	5e-55
224067824	151	histone deacetylase complex protein [Pop	0.967	1.0	0.775	6e-55
115443887	152	Os02g0122000 [Oryza sativa Japonica Grou	0.967	0.993	0.735	4e-54
356522688	145	PREDICTED: histone deacetylase complex s	0.820	0.882	0.812	4e-54
358345611	151	Histone deacetylase complex subunit SAP1	0.775	0.801	0.868	6e-54
346469933	153	hypothetical protein [Amblyomma maculatu	0.980	1.0	0.743	6e-53
212724014	152	uncharacterized protein LOC100194333 [Ze	0.974	1.0	0.705	8e-53

>gi|449460459|ref|XP_004147963.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus] gi|449494271|ref|XP_004159498.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 116/155 (74%), Positives = 127/155 (81%), Gaps = 1/155 (0%)

Query: 2   AGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRED 61
           A     Q R +GR  P  PS    PPP PRPRFEPVDREKTCPLLLRVFTK+GGHH+ ED
Sbjct: 13  AATAPTQGRPSGRPLP-PPSQTKAPPPNPRPRFEPVDREKTCPLLLRVFTKVGGHHTDED 71

Query: 62  FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVRE 121
           FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAP ARRR+A+LSFAFVYPDK GRF++++
Sbjct: 72  FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQ 131

Query: 122 VGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL 156
           VG T SY   R+LDD K L EL F+IGDYLDVAIL
Sbjct: 132 VGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453837|ref|XP_002277566.1| PREDICTED: histone deacetylase complex subunit SAP18 [Vitis vinifera] gi|296089118|emb|CBI38821.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (572), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 112/125 (89%), Positives = 118/125 (94%)

Query: 32  PRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVK 91
           PRFEPVDREKTCPLLLRVFTKIG HHS+EDFAVRGKEPKDEVQIYTWKDATLRELTDLVK
Sbjct: 28  PRFEPVDREKTCPLLLRVFTKIGCHHSKEDFAVRGKEPKDEVQIYTWKDATLRELTDLVK 87

Query: 92  EVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151
           EVAPAARRRDA LSFAFVYPD NGRF++REVGKTFSY   ++LDDGK LAELGF+IGDYL
Sbjct: 88  EVAPAARRRDAILSFAFVYPDTNGRFVLREVGKTFSYGNGKRLDDGKALAELGFQIGDYL 147

Query: 152 DVAIL 156
           DVAIL
Sbjct: 148 DVAIL 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724413|ref|NP_001236033.1| uncharacterized protein LOC100526922 [Glycine max] gi|255631155|gb|ACU15943.1| unknown [Glycine max]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/123 (88%), Positives = 114/123 (92%), Gaps = 1/123 (0%)

Query: 34  FEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 93
            EPVDREKTCPLLLRVFTKIG HHS EDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV
Sbjct: 30  LEPVDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 89

Query: 94  APAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
           APAARRR+A+LSFAFV+PDKNGRF V+EVGKT SY G  +LDDGK LAELGFEIGDYLDV
Sbjct: 90  APAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSY-GNGRLDDGKALAELGFEIGDYLDV 148

Query: 154 AIL 156
           AIL
Sbjct: 149 AIL 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432217|ref|XP_004133896.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus] gi|449480076|ref|XP_004155792.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 115/159 (72%), Positives = 126/159 (79%), Gaps = 14/159 (8%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPP---PPPPRPRFEPVDREKTCPLLLRVFTKIGGHH 57
           MAG  EA RR  G          GPP     PPRPR EPVDREKTCPLLLRVFTK G HH
Sbjct: 1   MAGEAEAPRRAYG----------GPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHH 50

Query: 58  SREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRF 117
             EDFAVRGKEP+DEVQIYTWKDATLRELTDLVKEVAP ARRR+A+LSFA VYPD++GRF
Sbjct: 51  FNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRF 110

Query: 118 MVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL 156
           ++REVGKTFS+ G R+LDD   L ELGF+IGDYLDVAI+
Sbjct: 111 VLREVGKTFSF-GNRRLDDSLALGELGFQIGDYLDVAII 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067824|ref|XP_002302551.1| histone deacetylase complex protein [Populus trichocarpa] gi|222844277|gb|EEE81824.1| histone deacetylase complex protein [Populus trichocarpa]

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 129/156 (82%), Gaps = 5/156 (3%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRE 60
           MAG+ E QRRQ GR  P   + R  PPPPP P   P+DREKTCPLLLRVFTKIG HHS E
Sbjct: 1   MAGMAEMQRRQGGR--PFALTARAFPPPPPPP--PPIDREKTCPLLLRVFTKIGDHHSNE 56

Query: 61  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR 120
           DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV PAARRRDARLSFAFVYPDKNGRF+VR
Sbjct: 57  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVTPAARRRDARLSFAFVYPDKNGRFVVR 116

Query: 121 EVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL 156
           EVGKT S+   +  DD K LA+LGF+IGDYLDVAI 
Sbjct: 117 EVGKTNSHRNGK-FDDNKALAQLGFQIGDYLDVAIF 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115443887|ref|NP_001045723.1| Os02g0122000 [Oryza sativa Japonica Group] gi|41052753|dbj|BAD07609.1| putative P18 [Oryza sativa Japonica Group] gi|113535254|dbj|BAF07637.1| Os02g0122000 [Oryza sativa Japonica Group] gi|125537867|gb|EAY84262.1| hypothetical protein OsI_05642 [Oryza sativa Indica Group] gi|125580615|gb|EAZ21546.1| hypothetical protein OsJ_05174 [Oryza sativa Japonica Group] gi|215768364|dbj|BAH00593.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 124/155 (80%), Gaps = 4/155 (2%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRE 60
           MAG GE   R      P+   G   PPP  R R EPVDREKTCPLLLRVFTK+GGHH  E
Sbjct: 1   MAGRGEMPMRPVRPGPPMQYRG---PPPMARARVEPVDREKTCPLLLRVFTKVGGHHQNE 57

Query: 61  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR 120
           +FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA AAR+R+ARLSFAFVYPDK+GRF+V+
Sbjct: 58  EFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVALAARKRNARLSFAFVYPDKHGRFVVK 117

Query: 121 EVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155
           EVG TFSY G  + DD K LAELGF+IGDYL VAI
Sbjct: 118 EVGSTFSY-GHGRGDDAKTLAELGFQIGDYLSVAI 151

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522688|ref|XP_003529978.1| PREDICTED: histone deacetylase complex subunit SAP18-like [Glycine max]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 108/133 (81%), Positives = 118/133 (88%), Gaps = 5/133 (3%)

Query: 28  PPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELT 87
           PP R   EP+DREKTCPLLLRVFTKIG HHS EDFAVRGKEP+DEVQIYTWKDATLRELT
Sbjct: 14  PPSRSCLEPIDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPEDEVQIYTWKDATLRELT 73

Query: 88  DLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR----EVGKTFSYEGRRQLDDGKMLAEL 143
           DLVKEVAPAARRR+A+LSFAF++PDKNGRF+VR    +VGKT SY G  +LDDGK LAEL
Sbjct: 74  DLVKEVAPAARRRNAKLSFAFIFPDKNGRFIVRKFEDDVGKTLSY-GNGRLDDGKALAEL 132

Query: 144 GFEIGDYLDVAIL 156
           GFEIGDYLDV+IL
Sbjct: 133 GFEIGDYLDVSIL 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345611|ref|XP_003636869.1| Histone deacetylase complex subunit SAP18 [Medicago truncatula] gi|355502804|gb|AES84007.1| Histone deacetylase complex subunit SAP18 [Medicago truncatula] gi|388503400|gb|AFK39766.1| unknown [Medicago truncatula]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 106/122 (86%), Positives = 114/122 (93%), Gaps = 1/122 (0%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           EPVDREKTCPLLLRVFTKIG HHS +DF+VRGKEPKDEVQIYTWKDATLRELTDLVKEVA
Sbjct: 31  EPVDREKTCPLLLRVFTKIGSHHSMDDFSVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 90

Query: 95  PAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVA 154
           PAARRR+A+LSFAFV+PDKNGRF V+EVGKT SY G  +LDDGK LA+LGFEIGDYLDVA
Sbjct: 91  PAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSY-GTGRLDDGKALADLGFEIGDYLDVA 149

Query: 155 IL 156
           IL
Sbjct: 150 IL 151

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346469933|gb|AEO34811.1| hypothetical protein [Amblyomma maculatum]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 132/156 (84%), Gaps = 3/156 (1%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRE 60
           MA V E Q RQ   +RP+ P+    PPPP RPRFEPVDREKTCPLLLRVFTK+GGHH +E
Sbjct: 1   MAAVAEVQSRQ---TRPIAPAQPRGPPPPVRPRFEPVDREKTCPLLLRVFTKVGGHHVKE 57

Query: 61  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR 120
           DFAVRGKEPKDEVQIYTW DATLRELTDLVKEVA AAR+R+A+LSFAFVYPDKNGRF+V+
Sbjct: 58  DFAVRGKEPKDEVQIYTWMDATLRELTDLVKEVAQAARKREAKLSFAFVYPDKNGRFVVK 117

Query: 121 EVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL 156
            VG T+S+   R++DDGK L +LGF+IGDYL VAIL
Sbjct: 118 GVGMTYSFGNGRRIDDGKTLKDLGFQIGDYLSVAIL 153

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|212724014|ref|NP_001132841.1| uncharacterized protein LOC100194333 [Zea mays] gi|242063858|ref|XP_002453218.1| hypothetical protein SORBIDRAFT_04g001820 [Sorghum bicolor] gi|194695546|gb|ACF81857.1| unknown [Zea mays] gi|195650597|gb|ACG44766.1| histone deacetylase complex subunit SAP18 [Zea mays] gi|241933049|gb|EES06194.1| hypothetical protein SORBIDRAFT_04g001820 [Sorghum bicolor] gi|413935340|gb|AFW69891.1| histone deacetylase complex subunit SAP18 isoform 1 [Zea mays] gi|413935341|gb|AFW69892.1| histone deacetylase complex subunit SAP18 isoform 2 [Zea mays]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 110/156 (70%), Positives = 125/156 (80%), Gaps = 4/156 (2%)

Query: 1   MAGVGEAQRRQAGRSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSRE 60
           MAG+G+   R A    P+   G   PPP  R R EP+DREKTCPLLLRVFT++ GHH  E
Sbjct: 1   MAGMGDMPMRPARPGPPMQHRG---PPPMARLRPEPIDREKTCPLLLRVFTRVAGHHQNE 57

Query: 61  DFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR 120
           +FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA  AR+R+ARLSFAFVYPDKNGRF+VR
Sbjct: 58  EFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVALPARKRNARLSFAFVYPDKNGRFVVR 117

Query: 121 EVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL 156
           +VG TF+Y G  + DD K LAELGF+IGDYL VAI+
Sbjct: 118 QVGSTFAY-GHGRGDDAKTLAELGFQIGDYLSVAIM 152

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2043704	152	SAP18 "SIN3 associated polypep	0.775	0.796	0.793	7.7e-48
UNIPROTKB|G3X7E1	172	SAP18 "Histone deacetylase com	0.974	0.883	0.470	7.9e-30
UNIPROTKB|Q90ZH5	153	chSAP18 "Uncharacterized prote	0.762	0.777	0.549	1.3e-29
UNIPROTKB|Q3T022	153	SAP18 "Histone deacetylase com	0.762	0.777	0.549	1.3e-29
UNIPROTKB|O00422	153	SAP18 "Histone deacetylase com	0.762	0.777	0.549	1.3e-29
UNIPROTKB|I3LF36	153	SAP18 "Uncharacterized protein	0.762	0.777	0.549	1.3e-29
RGD|1310388	153	Sap18 "Sin3-associated polypep	0.762	0.777	0.549	1.6e-29
FB|FBgn0024491	150	Bin1 "Bicoid interacting prote	0.743	0.773	0.491	3.5e-27
GENEDB_PFALCIPARUM|MAL7P1.37	728	MAL7P1.37 "sin3 associated pol	0.737	0.157	0.352	6e-14
UNIPROTKB|Q8IBX6	728	MAL7P1.37 "Sin3 associated pol	0.737	0.157	0.352	6e-14

TAIR|locus:2043704 SAP18 "SIN3 associated polypeptide P18" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 96/121 (79%), Positives = 107/121 (88%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             EPVDREKTCPLLLRVFTK GGHH+ ED+AVRGKEPKDEVQIYTWKDA+LRELTDLVKEV+
Sbjct:    31 EPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVS 90

Query:    95 PAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVA 154
              AARRR+ARLSFAFVYP+  G + VREVG+T +Y  R+Q DD K L+EL FEIGDYLDVA
Sbjct:    91 VAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVA 150

Query:   155 I 155
             I
Sbjct:   151 I 151

GO:0005634 "nucleus" evidence=ISM

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

UNIPROTKB|G3X7E1 SAP18 "Histone deacetylase complex subunit SAP18" [Bos taurus (taxid:9913)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 73/155 (47%), Positives = 87/155 (56%)

Query:     2 AGVGEAQRRQAXXXXXXXXXXXXXXXXXXXXXFEPVDREKTCPLLLRVFTKIGGHHSRED 61
             AGVG    R A                      +P+DREKTCPLLLRVFT   G H R D
Sbjct:     4 AGVGGQSERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMD 63

Query:    62 FAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVR 120
                RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+
Sbjct:    64 EFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVK 123

Query:   121 EVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155
             E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   124 EIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 156

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q90ZH5 chSAP18 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 67/122 (54%), Positives = 81/122 (66%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct:    18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query:    95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
             P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct:    78 PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135

Query:   154 AI 155
             AI
Sbjct:   136 AI 137

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q3T022 SAP18 "Histone deacetylase complex subunit SAP18" [Bos taurus (taxid:9913)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 67/122 (54%), Positives = 81/122 (66%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct:    18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query:    95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
             P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct:    78 PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135

Query:   154 AI 155
             AI
Sbjct:   136 AI 137

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|O00422 SAP18 "Histone deacetylase complex subunit SAP18" [Homo sapiens (taxid:9606)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 67/122 (54%), Positives = 81/122 (66%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct:    18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query:    95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
             P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct:    78 PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135

Query:   154 AI 155
             AI
Sbjct:   136 AI 137

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=TAS

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|I3LF36 SAP18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 67/122 (54%), Positives = 81/122 (66%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct:    18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query:    95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
             P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct:    78 PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135

Query:   154 AI 155
             AI
Sbjct:   136 AI 137

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1310388 Sap18 "Sin3-associated polypeptide 18" [Rattus norvegicus (taxid:10116)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 67/122 (54%), Positives = 81/122 (66%)

Query:    35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
             +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct:    18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query:    95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
             P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct:    78 PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135

Query:   154 AI 155
             AI
Sbjct:   136 AI 137

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0024491 Bin1 "Bicoid interacting protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 59/120 (49%), Positives = 83/120 (69%)

Query:    37 VDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPA 96
             +DREKTCP+LLRVF   G HHS  ++   G  P +E+QIYTW+DATL ELT LV++V P 
Sbjct:    18 IDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLVRDVNPD 76

Query:    97 ARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155
              R++     FA VYP+ ++  F +RE+G T +  G++ +DD K LA+  F IGD+LD++I
Sbjct:    77 TRKKGTYFDFAVVYPNFRSNHFQMREIGVTCT--GQKGIDDNKTLAQAKFSIGDFLDISI 134

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0003714 "transcription corepressor activity" evidence=IGI;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0016580 "Sin3 complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0006342 "chromatin silencing" evidence=IGI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GENEDB_PFALCIPARUM|MAL7P1.37 MAL7P1.37 "sin3 associated polypeptide p18-like protein" [Plasmodium falciparum (taxid:5833)]

 Score = 191 (72.3 bits), Expect = 6.0e-14, P = 6.0e-14
 Identities = 43/122 (35%), Positives = 72/122 (59%)

Query:    37 VDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPK-DEVQIYTWKDATLRELTDLVKEVAP 95
             ++REKTCP LLR+F K+   ++ +D  +  K+   +E+QIY W D T+RE+  LVK+   
Sbjct:   608 INREKTCPFLLRLFYKVDKEYNVDDMDILTKDNNSNELQIYAWIDITMREIVTLVKDFYK 667

Query:    96 AARRRDARLSF-AFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVA 154
              +R+R+A+  F  F Y  K   F+ +     ++Y+     +D K L  L +EIGD + ++
Sbjct:   668 DSRQRNAQWVFKVFSYEKKKLTFLSKVHSTIYNYK-----EDNKTLLSLNYEIGDIILLS 722

Query:   155 IL 156
             I+
Sbjct:   723 IM 724

GO:0000118 "histone deacetylase complex" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

UNIPROTKB|Q8IBX6 MAL7P1.37 "Sin3 associated polypeptide p18-like protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 191 (72.3 bits), Expect = 6.0e-14, P = 6.0e-14
 Identities = 43/122 (35%), Positives = 72/122 (59%)

Query:    37 VDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPK-DEVQIYTWKDATLRELTDLVKEVAP 95
             ++REKTCP LLR+F K+   ++ +D  +  K+   +E+QIY W D T+RE+  LVK+   
Sbjct:   608 INREKTCPFLLRLFYKVDKEYNVDDMDILTKDNNSNELQIYAWIDITMREIVTLVKDFYK 667

Query:    96 AARRRDARLSF-AFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVA 154
              +R+R+A+  F  F Y  K   F+ +     ++Y+     +D K L  L +EIGD + ++
Sbjct:   668 DSRQRNAQWVFKVFSYEKKKLTFLSKVHSTIYNYK-----EDNKTLLSLNYEIGDIILLS 722

Query:   155 IL 156
             I+
Sbjct:   723 IM 724


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       135   0.00091  102 3  11 22  0.39    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  119 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.63u 0.10s 12.73t   Elapsed:  00:00:01
  Total cpu time:  12.63u 0.10s 12.73t   Elapsed:  00:00:01
  Start:  Mon May 20 23:08:58 2013   End:  Mon May 20 23:08:59 2013

GO:0000118 "histone deacetylase complex" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O64644	SAP18_ARATH	No assigned EC number	0.7874	0.8141	0.8355	yes	no
Q5RDT5	SAP18_PONAB	No assigned EC number	0.5491	0.7628	0.7777	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4328127	histone deacetylase complex subunit SAP18, putative, expressed (152 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
	4334543	RNA recognition motif containing protein, putative, expressed (130 aa)				•					0.638
	OsI_27848	LSM domain containing protein, expressed (93 aa)				•					0.605
	4328158	LSM domain containing protein, expressed (88 aa)				•					0.595
	4333540	WD domain, G-beta repeat domain containing protein, expressed (428 aa)				•		•	•		0.572
	4332557	RNA recognition motif containing protein, putative, expressed (232 aa)				•					0.568
	4342517	RNA polymerase subunit, putative, expressed (120 aa)				•					0.556
	4347573	peptidase, T1 family, putative, expressed; The proteasome is a multicatalytic proteinase comple [...] (256 aa)				•					0.552
	4335701	defender against cell death 1, putative, expressed; Possesses cell death-inhibiting activity (B [...] (114 aa)				•			•		0.537
	4351998	mago nashi, putative, expressed (160 aa)				•					0.532
	4340192	rRNA-processing protein FCF, putative, expressed (212 aa)				•					0.516

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
pfam06487	121	pfam06487, SAP18, Sin3 associated polypeptide p18	6e-57

>gnl|CDD|219057 pfam06487, SAP18, Sin3 associated polypeptide p18 (SAP18)

 Score =  173 bits (441), Expect = 6e-57
 Identities = 71/122 (58%), Positives = 86/122 (70%), Gaps = 4/122 (3%)

Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCP LLRVF K G HHS  DF+  G  P +E+QIYTW DATLRELT L+K+V 
Sbjct: 3   KPIDREKTCPFLLRVFYKNGRHHSLSDFS-SGNVPSNELQIYTWLDATLRELTTLIKDVL 61

Query: 95  PAARRRDARLSFAFVYPDKN-GRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
           P ARRR  R SF  VYPDK  GR++ +++G   S  G++  DD K L +  F IGDYLDV
Sbjct: 62  PPARRRGTRFSFRLVYPDKKRGRYLSKDLGSVIS--GQKGPDDNKTLQDAKFVIGDYLDV 119

Query: 154 AI 155
           AI
Sbjct: 120 AI 121

This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex which is responsible for the repression of transcription via the modification of histone polypeptides. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PF06487	120	SAP18: Sin3 associated polypeptide p18 (SAP18); In	100.0
KOG3391	151	consensus Transcriptional co-repressor component [	100.0
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	90.41
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	87.07

>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences

Probab=100.00  E-value=8.3e-61  Score=365.55  Aligned_cols=118  Identities=58%  Similarity=1.027  Sum_probs=96.3

Q ss_pred             CCCCccCCCCcEEEEEeccCCCCCCcccccCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCC
Q 031615           35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKN  114 (156)
Q Consensus        35 ~~iDRektcPFLLRvF~~~g~hh~~~dF~~~g~lP~~ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~  114 (156)
                      ++|||||||||||||||++|+||+++||+. |++|.||||||||+|||||||++|||+++|++|++||+|+|++||||.+
T Consensus         2 ~~idRektcPfLLRvF~~~g~~h~~~dF~~-~~~P~~elqIYtW~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~   80 (120)
T PF06487_consen    2 KPIDREKTCPFLLRVFYRNGRHHRLDDFSR-GSLPRNELQIYTWMDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTR   80 (120)
T ss_dssp             ----CCCS--EEEEEEESSSS---GGGCGC-CS-TTTEEEEEE-TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTT
T ss_pred             CCcccCCCCCeEEEEEEecCCCCCHHHccC-CCCCcCeeEEEEcccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCC
Confidence            579999999999999999999999999996 9999999999999999999999999999999999999999999999965


Q ss_pred             -CCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615          115 -GRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI  155 (156)
Q Consensus       115 -gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI  155 (156)
                       |+|.+||||+|++|.++  .||+|||++++|+|||||||||
T Consensus        81 ~~r~~~kdlGsv~~g~~~--~d~~kTL~~~~F~iGDyidvaI  120 (120)
T PF06487_consen   81 SGRYVSKDLGSVVSGRKG--PDDNKTLADLRFVIGDYIDVAI  120 (120)
T ss_dssp             TTCEEEEEEEEEETTB----TTTTSBCGGGT--TT-EEEEEE
T ss_pred             CCceeeecCCeEECCCCC--CCcccCHhhCCcccCCEEEEeC
Confidence             99999999999999988  5899999999999999999998

SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.

>KOG3391 consensus Transcriptional co-repressor component [Transcription]

Probab=100.00  E-value=1.1e-54  Score=339.84  Aligned_cols=119  Identities=60%  Similarity=0.981  Sum_probs=114.9

Q ss_pred             CCCCccCCCCcEEEEEec-cCCCCCCcccccCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCC
Q 031615           35 EPVDREKTCPLLLRVFTK-IGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDK  113 (156)
Q Consensus        35 ~~iDRektcPFLLRvF~~-~g~hh~~~dF~~~g~lP~~ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~  113 (156)
                      ++||||||||||||||++ +|+||.+|||+. |++|++||||||||||||+||+.||||++|++|++||.|+|++||+|.
T Consensus        16 ~piDrektCPlLlrVf~~~~g~hH~~def~~-g~vPs~elQiYtW~datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~   94 (151)
T KOG3391|consen   16 KPIDREKTCPLLLRVFTQFNGRHHVMDEFED-GNVPSSELQIYTWMDATLRELTSLVKEVNPEARKKGTSFDFAVVFPDK   94 (151)
T ss_pred             CcccccccCcceeeeeeecCCCCcchhhhhc-CCCCchheeEeehhhhhHHHHHHHHHHcCHHHhccCceEEEEEEeccC
Confidence            689999999999999999 999999999995 999999999999999999999999999999999999999999999998


Q ss_pred             C-CCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEeC
Q 031615          114 N-GRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL  156 (156)
Q Consensus       114 ~-gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI~  156 (156)
                      + .+|.+||||++++|+++  .||+|||++++|+|||||||||.
T Consensus        95 ~~~~y~~RevG~t~~g~Kg--~ddnktL~~~kf~iGD~lDVaI~  136 (151)
T KOG3391|consen   95 KSPRYIVREVGTTCLGRKG--IDDNKTLQQTKFEIGDYLDVAIT  136 (151)
T ss_pred             CCCCceeeeecccccCccc--CCccchhhhCCccccceEEEEec
Confidence            6 59999999999999998  69999999999999999999994

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=90.41  E-value=0.51  Score=31.43  Aligned_cols=61  Identities=30%  Similarity=0.399  Sum_probs=39.8

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615           72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL  151 (156)
Q Consensus        72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi  151 (156)
                      ++++...++.|+++|.....+..--......+|.|.               |...        ++++|+++++..-||.|
T Consensus        12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd---------------G~~L--------~~~~T~~~~~ied~d~I   68 (72)
T PF11976_consen   12 EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD---------------GKRL--------DPNDTPEDLGIEDGDTI   68 (72)
T ss_dssp             EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET---------------TEEE---------TTSCHHHHT-STTEEE
T ss_pred             EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC---------------CEEc--------CCCCCHHHCCCCCCCEE
Confidence            678888899999999988776432111122222221               3222        46689999999999999


Q ss_pred             EEEe
Q 031615          152 DVAI  155 (156)
Q Consensus       152 dvAI  155 (156)
                      +|.|
T Consensus        69 dv~I   72 (72)
T PF11976_consen   69 DVII   72 (72)
T ss_dssp             EEE-
T ss_pred             EEEC
Confidence            9986

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=87.07  E-value=2.2  Score=27.89  Aligned_cols=60  Identities=25%  Similarity=0.396  Sum_probs=42.5

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615           72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL  151 (156)
Q Consensus        72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi  151 (156)
                      .+.|-...+.|+.||=..|.+...- ...    ..+++|-           |.+        .+|++||.++++.-|+.|
T Consensus         7 ~~~~~v~~~~tV~~lK~~i~~~~~~-~~~----~~~L~~~-----------G~~--------L~d~~tL~~~~i~~~~~I   62 (69)
T PF00240_consen    7 TFTLEVDPDDTVADLKQKIAEETGI-PPE----QQRLIYN-----------GKE--------LDDDKTLSDYGIKDGSTI   62 (69)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHHTS-TGG----GEEEEET-----------TEE--------ESTTSBTGGGTTSTTEEE
T ss_pred             EEEEEECCCCCHHHhhhhccccccc-ccc----cceeeee-----------eec--------ccCcCcHHHcCCCCCCEE
Confidence            5788888999999999999986431 111    1223332           222        357899999999999999


Q ss_pred             EEEe
Q 031615          152 DVAI  155 (156)
Q Consensus       152 dvAI  155 (156)
                      .+.+
T Consensus        63 ~l~~   66 (69)
T PF00240_consen   63 HLVI   66 (69)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8865

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
4a6q_A	143	Crystal Structure Of Mouse Sap18 Residues 6-143 Len		1e-31
4a90_A	143	Crystal Structure Of Mouse Sap18 Residues 1-143 Len		2e-31
4a8x_C	130	Structure Of The Core Asap Complex Length = 130		2e-31
2hde_A	148	Solution Structure Of Human Sap18 Length = 148		2e-30

>pdb|4A6Q|A Chain A, Crystal Structure Of Mouse Sap18 Residues 6-143 Length = 143

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRXDEFSRGNVPSSELQIYTWXDATLKELTSLVKEVY 77
Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
           P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFXDLKRPGYRVKEIGSTXS--GRKGTDDSXTLQSQKFQIGDYLDI 135
Query: 154 AI 155
           AI
Sbjct: 136 AI 137

>pdb|4A90|A Chain A, Crystal Structure Of Mouse Sap18 Residues 1-143 Length = 143

Iteration: 1
 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77
Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
           P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135
Query: 154 AI 155
           AI
Sbjct: 136 AI 137

>pdb|4A8X|C Chain C, Structure Of The Core Asap Complex Length = 130

Iteration: 1
 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 5   KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 64
Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
           P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct: 65  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 122
Query: 154 AI 155
           AI
Sbjct: 123 AI 124

>pdb|2HDE|A Chain A, Solution Structure Of Human Sap18 Length = 148

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 80/122 (65%), Gaps = 3/122 (2%)
Query: 35  EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
           +P+DREKT PLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 17  KPIDREKTSPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 76
Query: 95  PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
           P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+
Sbjct: 77  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 134
Query: 154 AI 155
           AI
Sbjct: 135 AI 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
4a6q_A	143	Histone deacetylase complex subunit SAP18; transcr	3e-56

>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C Length = 143

 Score =  172 bits (436), Expect = 3e-56
 Identities = 68/133 (51%), Positives = 81/133 (60%), Gaps = 6/133 (4%)

Query: 25  PPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLR 84
                P     P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+
Sbjct: 11  EIKKEPEK---PIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLK 67

Query: 85  ELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAEL 143
           ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L   
Sbjct: 68  ELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQ 125

Query: 144 GFEIGDYLDVAIL 156
            F+IGDYLD+AI 
Sbjct: 126 KFQIGDYLDIAIT 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
4a6q_A	143	Histone deacetylase complex subunit SAP18; transcr	100.0
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	96.72
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	81.53
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	80.78

>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C

Probab=100.00  E-value=2.2e-61  Score=377.36  Aligned_cols=122  Identities=53%  Similarity=0.881  Sum_probs=115.9

Q ss_pred             CCCCCCCccCCCCcEEEEEecc-CCCCCCcccccCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEe
Q 031615           32 PRFEPVDREKTCPLLLRVFTKI-GGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVY  110 (156)
Q Consensus        32 ~~~~~iDRektcPFLLRvF~~~-g~hh~~~dF~~~g~lP~~ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VY  110 (156)
                      ...++|||||||||||||||++ |+||+++||+ +|++|+||||||||+|||||||++|||+++|++|++||+|+|++||
T Consensus        15 ~~~~~idRektcPfLLRvF~~~ng~hh~~~eF~-~~~~P~~ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~Vy   93 (143)
T 4a6q_A           15 EPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVF   93 (143)
T ss_dssp             CCCCCCCGGGSCCEEEEEEEESSSSCCCGGGGC-TTCCCSCCEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEE
T ss_pred             CCCCCccccCCCCeEEEEEecCCCCCCCHHHcc-CCCCCCceeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEc
Confidence            4456799999999999999999 7999999998 5899999999999999999999999999999999999999999999


Q ss_pred             eC-CCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEeC
Q 031615          111 PD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL  156 (156)
Q Consensus       111 pD-~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI~  156 (156)
                      || ++|+|.+||||+|++|.++  .||+|||++++|+|||||||||+
T Consensus        94 pD~r~~ry~~kdlGsv~~g~~~--~dd~kTL~~~rF~iGDyidvaI~  138 (143)
T 4a6q_A           94 MDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDIAIT  138 (143)
T ss_dssp             ECSSSSSEEEEEEEEEETTBCC--TTTTCBTGGGTCCTTCEEEEEEE
T ss_pred             ccCCCCceeeccCCEEecCCCC--CcccccHHHCCCcCCCEEEEEEe
Confidence            99 5689999999999999988  68999999999999999999995

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=96.72  E-value=0.036  Score=40.79  Aligned_cols=97  Identities=14%  Similarity=0.274  Sum_probs=59.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcEEEEEeccCCCCCCcccccCCCCCCCceeeeecCCCCHHHHHHHHHhh
Q 031615           14 RSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV   93 (156)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~iDRektcPFLLRvF~~~g~hh~~~dF~~~g~lP~~ElQIYTW~DaTLrEL~~Llk~~   93 (156)
                      .++..|+|-||.++|+..+....-+      =.++||++..  .             ..+.|-...+.|+.+|-..|.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~s~~~~~~~------~~m~I~Vk~~--g-------------~~~~l~v~~~~TV~~LK~~I~~~   64 (125)
T 1j8c_A            6 ESSGPPRPSRGPAAAQGSAAAPAEP------KIIKVTVKTP--K-------------EKEEFAVPENSSVQQFKEAISKR   64 (125)
T ss_dssp             CCCCCCSSCCCSCCCCCSSSCCCCC------CCEEEEEECS--S-------------CEEEEEECTTCCHHHHHHHHHHH
T ss_pred             cCCCCCChhhCCcCCCCCCcccCCC------CcEEEEEEeC--C-------------eEEEEEECCCCcHHHHHHHHHHH
Confidence            3666777778876665544443322      2378888752  0             12344456789999999999875


Q ss_pred             CccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615           94 APAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI  155 (156)
Q Consensus        94 ~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI  155 (156)
                      .- .....    .+++|-           |.+        .+|++||.+++..-|+.|.|.+
T Consensus        65 ~g-ip~~~----QrLi~~-----------Gk~--------L~D~~tL~dygI~~gstI~lv~  102 (125)
T 1j8c_A           65 FK-SQTDQ----LVLIFA-----------GKI--------LKDQDTLIQHGIHDGLTVHLVI  102 (125)
T ss_dssp             HC-SCSSS----EEEEET-----------TEE--------ESTTSCGGGTTCSSSEEEEEEE
T ss_pred             HC-cCcce----EEEEEC-----------CEE--------cCCCCCHHHcCCCCCCEEEEEe
Confidence            21 11111    234442           222        2466999999999999888754

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=81.53  E-value=2.8  Score=30.13  Aligned_cols=65  Identities=15%  Similarity=0.319  Sum_probs=42.4

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhC--ccccCCCce-E-------EEEEEeeCCCCCceeeecceEeecCCCCCCCcccccc
Q 031615           72 EVQIYTWKDATLRELTDLVKEVA--PAARRRDAR-L-------SFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLA  141 (156)
Q Consensus        72 ElQIYTW~DaTLrEL~~Llk~~~--p~ar~~gtr-l-------sFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~  141 (156)
                      ++.|=.=.++|+.||=..|.+..  |..+..|.+ .       .|+++|.           |.+.       .||++||.
T Consensus        19 ~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~-----------Gk~L-------~dD~~tL~   80 (105)
T 1v2y_A           19 VMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA-----------GEKL-------TEDRKKLR   80 (105)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESS-----------SCEE-------CCSSSBHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeC-----------CcCc-------cCCcCCHH
Confidence            34444457899999999998865  233333322 1       2466654           1111       36889999


Q ss_pred             ccCcccCcEEEEE
Q 031615          142 ELGFEIGDYLDVA  154 (156)
Q Consensus       142 d~rF~iGDyidvA  154 (156)
                      +++..-||.|-+.
T Consensus        81 dygI~~g~~l~lv   93 (105)
T 1v2y_A           81 DYGIRNRDEVSFI   93 (105)
T ss_dssp             HHTCCSSEEEEEE
T ss_pred             HcCCCCCCEEEEE
Confidence            9999999998764

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=80.78  E-value=6.6  Score=25.23  Aligned_cols=59  Identities=14%  Similarity=0.281  Sum_probs=39.1

Q ss_pred             eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615           73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD  152 (156)
Q Consensus        73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid  152 (156)
                      +.|-...++|+.||-..|.+..- ...  .  ..+++|-           |..        .+|++||.++++.-||-|.
T Consensus        16 ~~~~v~~~~tV~~lK~~i~~~~~-ip~--~--~qrL~~~-----------g~~--------L~d~~tL~~~~i~~~~~i~   71 (85)
T 3n3k_B           16 IILEVEPSDTIENVKAKIQDKEG-IPP--D--QQRLIFA-----------GKQ--------LEDGRTLSDYNIHNHSALY   71 (85)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHC-CCG--G--GEEEEET-----------BEE--------CCTTCBTTTTTCCTTCEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHHHC-CCH--H--HEEEEEC-----------CeE--------CCCCCCHHHCCCCCCCEEE
Confidence            44455578999999999987521 100  1  1355552           111        2567899999999999998


Q ss_pred             EEe
Q 031615          153 VAI  155 (156)
Q Consensus       153 vAI  155 (156)
                      +.+
T Consensus        72 l~~   74 (85)
T 3n3k_B           72 LLL   74 (85)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	96.37
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	89.07
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	83.71
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	83.13

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.064  Score=36.31  Aligned_cols=76  Identities=14%  Similarity=0.316  Sum_probs=50.2

Q ss_pred             CCCCcEEEEEeccCCCCCCcccccCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceee
Q 031615           41 KTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR  120 (156)
Q Consensus        41 ktcPFLLRvF~~~g~hh~~~dF~~~g~lP~~ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~k  120 (156)
                      ..-|-+++|++++..               +...|-.+.++|+.||=..|.+..-- ...    ..+++|-         
T Consensus        27 ~~~~~~i~V~Vk~~~---------------~~~~i~V~~~~tV~~LK~~I~~~~gi-~~~----~qrLi~~---------   77 (103)
T d1j8ca_          27 PAEPKIIKVTVKTPK---------------EKEEFAVPENSSVQQFKEAISKRFKS-QTD----QLVLIFA---------   77 (103)
T ss_dssp             CCCCCCEEEEEECSS---------------CEEEEEECTTCCHHHHHHHHHHHHCS-CSS----SEEEEET---------
T ss_pred             CCCCCeEEEEEECCC---------------ccEEEEECCCChHHHHHHHHHHHHCc-CHH----Heeeeee---------
Confidence            346778999998521               12335567899999999999885321 111    1344443         


Q ss_pred             ecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615          121 EVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI  155 (156)
Q Consensus       121 dlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI  155 (156)
                        |.+        .+|++||++++.+-|+.|.+.+
T Consensus        78 --Gk~--------L~D~~tL~~~~I~~g~~I~lvl  102 (103)
T d1j8ca_          78 --GKI--------LKDQDTLIQHGIHDGLTVHLVI  102 (103)
T ss_dssp             --TEE--------ESTTSCGGGTTCSSSEEEEEEE
T ss_pred             --eec--------ccCCCcHHHcCCCCCCEEEEEE
Confidence              222        2467899999999999998764

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.88  Score=29.22  Aligned_cols=74  Identities=23%  Similarity=0.357  Sum_probs=49.4

Q ss_pred             CCcEEEEEeccCCCCCCcccccCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeec
Q 031615           43 CPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREV  122 (156)
Q Consensus        43 cPFLLRvF~~~g~hh~~~dF~~~g~lP~~ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdl  122 (156)
                      -|..+++++++..               +...|....+.|+.||-..|.+..--.. ..    .+++|-           
T Consensus         4 ~~~~i~I~Vkt~~---------------~~~~~~V~~~~tV~~lK~~i~~~~gi~~-~~----qrL~~~-----------   52 (84)
T d1yqba1           4 SPHLIKVTVKTPK---------------DKEDFSVTDTCTIQQLKEEISQRFKAHP-DQ----LVLIFA-----------   52 (84)
T ss_dssp             CTTEEEEEEECSS---------------CEEEEEEETTCBHHHHHHHHHHHHTCCG-GG----EEEEET-----------
T ss_pred             CCCEEEEEEEcCC---------------CcEEEEECCCCcHHHHHHHHHHHHCcCc-hh----EEEEEe-----------
Confidence            5678999998632               1234566789999999999987532111 11    234433           


Q ss_pred             ceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615          123 GKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI  155 (156)
Q Consensus       123 Gsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI  155 (156)
                      |..        .+|++||++++..-|+-|.+-+
T Consensus        53 Gk~--------L~D~~tL~~y~i~~gsti~lv~   77 (84)
T d1yqba1          53 GKI--------LKDPDSLAQCGVRDGLTVHLVI   77 (84)
T ss_dssp             TEE--------CCTTSBHHHHTCCTTCEEEEEE
T ss_pred             eee--------ccccCcHHHcCCCCCCEEEEEE
Confidence            221        3577999999999999998753

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=83.71  E-value=1.2  Score=28.19  Aligned_cols=60  Identities=18%  Similarity=0.283  Sum_probs=39.4

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615           72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL  151 (156)
Q Consensus        72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi  151 (156)
                      |+.+=.=++.|++.|...+.+..--. ...    ++|+|-           |..        -+++.|+++++.+-||.|
T Consensus        15 ~~~f~v~~~~~~~~l~~~~~~~~~i~-~~~----~~l~f~-----------G~~--------l~~~~T~~~~~i~dgd~I   70 (79)
T d1euvb_          15 EIFFKIKKTTPLRRLMEAFAKRQGKE-MDS----LRFLYD-----------GIR--------IQADQTPEDLDMEDNDII   70 (79)
T ss_dssp             EEEEEEETTSCTHHHHHHHHHHTTCC-GGG----EEEEET-----------TEE--------CCTTCCTTTTTCCTTEEE
T ss_pred             EEEEEECCCCcHHHHHHHHHHHhCCC-hHh----EEEEEC-----------CEE--------eCCCCCHHHCCCCCCCEE
Confidence            45544558889999999887743211 112    223332           322        256799999999999999


Q ss_pred             EEEe
Q 031615          152 DVAI  155 (156)
Q Consensus       152 dvAI  155 (156)
                      +|.+
T Consensus        71 ~v~~   74 (79)
T d1euvb_          71 EAHR   74 (79)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9975

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.13  E-value=2.6  Score=26.22  Aligned_cols=63  Identities=17%  Similarity=0.255  Sum_probs=41.9

Q ss_pred             ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615           72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL  151 (156)
Q Consensus        72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi  151 (156)
                      ++.|-.+.++|..+|=..|.+......-+-.  ..+++|-           |.+        .+|++||.+++..-|+.|
T Consensus        14 ~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~--~qrLi~~-----------Gk~--------L~D~~tL~~y~I~~~s~i   72 (77)
T d1oqya4          14 TFKIRMEPDETVKVLKEKIEAEKGRDAFPVA--GQKLIYA-----------GKI--------LSDDVPIRDYRIDEKNFV   72 (77)
T ss_dssp             EEEECCCTTCBHHHHHHHHHHHTCSSSCCST--EEEEESS-----------SSE--------ECSSSBTTTTCCCTTSCE
T ss_pred             EEEEEECCCCcHHHHHHHHHHhcCCCCCChH--HEEeEEC-----------CcC--------ccCCCcHHHcCCCCCCEE
Confidence            5666678999999999999876432110000  2344443           211        256899999999999999


Q ss_pred             EEEe
Q 031615          152 DVAI  155 (156)
Q Consensus       152 dvAI  155 (156)
                      .|-|
T Consensus        73 ~~~v   76 (77)
T d1oqya4          73 VVMV   76 (77)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7754