Citrus Sinensis ID: 031648

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVGTKPPPNRPNRLILPSLSAPEHNLLKLLEECNASGI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccHHHHHcHcccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHcccccHHHHHHHHHHcHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mvgifsrfsvgraghrrtqsaiderevlppnpavtgavpgtatTAAAAGAHGIQAavefkpvehpiepldndlpiqcplpepsilndgRIWKERVSAgmrrradlpvmkeggaleseavgtkpppnrpnrlilpslsapeHNLLKLLEECNASGI
Flexible Loop (DISEMBL)
mvgifsrfsvgraghrrtqsaiderevlppnpAVTGAVPGTATTAAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPlpepsilndgrIWKERVSagmrrradlpvmkeggaleseavgtkpppnrpNRLILPSLSAPEHNLLKLLEECNASGI
Low Complexity Region (SEG)
MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPavtgavpgtattaaaagahgiqaavEFKPVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVGTKpppnrpnrlilpSLSAPEHNLLKLLEECNASGI
Disordered region (IsUnstruct)
*******************************************TAAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKE**************************************************************
Disordered Region (DISOPRED)
**GIFS*FSV**********************************AAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVS****************************************SAPEHNLLKLLEECNAS**
Disordered Region (DISEMBL)
MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVGTKPPPNRPNRLILPSLSAPEHNLLKLLEECNASGI
Disordered Region (DISPRO)
*VGIF**FSVG**************************************AHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMR*R********************************SLSAPEHNLLKLLEECNAS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVGTKPPPNRPNRLILPSLSAPEHNLLKLLEECNASGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
224139046	152	predicted protein [Populus trichocarpa]	0.967	0.986	0.783	1e-59
356531471	151	PREDICTED: uncharacterized protein LOC10	0.974	1.0	0.754	1e-57
147843797	154	hypothetical protein VITISV_022546 [Viti	0.993	1.0	0.767	1e-57
359807636	151	uncharacterized protein LOC100791210 [Gl	0.974	1.0	0.754	3e-57
225427063	154	PREDICTED: uncharacterized protein LOC10	0.993	1.0	0.761	3e-57
357484825	149	hypothetical protein MTR_5g027940 [Medic	0.961	1.0	0.703	3e-50
18398194	158	uncharacterized protein [Arabidopsis tha	0.954	0.936	0.705	6e-49
449456751	138	PREDICTED: uncharacterized protein LOC10	0.877	0.985	0.693	3e-46
297823351	155	hypothetical protein ARALYDRAFT_902663 [	0.961	0.961	0.651	5e-46
297851628	158	hypothetical protein ARALYDRAFT_473384 [	0.954	0.936	0.673	5e-46

>gi|224139046|ref|XP_002326754.1| predicted protein [Populus trichocarpa] gi|222834076|gb|EEE72553.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 132/157 (84%), Gaps = 7/157 (4%)

Query: 1   MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFK 60
           MVGIFSRFSVGR GHRRTQSA+DEREVLPPN  VTGA         AA  HGI+ AVEFK
Sbjct: 1   MVGIFSRFSVGRGGHRRTQSALDEREVLPPNADVTGA-----AAVVAAAPHGIEVAVEFK 55

Query: 61  PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVG 120
           PVEHPIEPLDND PIQCPLPEPSILNDGR+WKERVSA + RR DLPVMKEGGALESE V 
Sbjct: 56  PVEHPIEPLDNDQPIQCPLPEPSILNDGRLWKERVSATVHRRGDLPVMKEGGALESENVE 115

Query: 121 T--KPPPNRPNRLILPSLSAPEHNLLKLLEECNASGI 155
           +  +P PN+ NRLILPS+SAPEHNLLKLLEECNASG+
Sbjct: 116 SRPRPRPNQSNRLILPSISAPEHNLLKLLEECNASGV 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531471|ref|XP_003534301.1| PREDICTED: uncharacterized protein LOC100804987 [Glycine max]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/155 (75%), Positives = 127/155 (81%), Gaps = 4/155 (2%)

Query: 1   MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFK 60
           MVGIFSRFS+GR  HRRTQSA+DEREV PPN            +AA A +HGI+ AVEFK
Sbjct: 1   MVGIFSRFSIGRNVHRRTQSALDEREVRPPN----SEAAAAVASAATATSHGIEVAVEFK 56

Query: 61  PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVG 120
           PVEHPIEPLDND PIQCPLPEPSILNDGRIWKERVSA +RRR DLPVMKEGG LESE  G
Sbjct: 57  PVEHPIEPLDNDRPIQCPLPEPSILNDGRIWKERVSATVRRRGDLPVMKEGGTLESEDAG 116

Query: 121 TKPPPNRPNRLILPSLSAPEHNLLKLLEECNASGI 155
            +P  +R NR+ILPS+SAPEHNLLKLLEECNASGI
Sbjct: 117 ARPRTSRSNRMILPSVSAPEHNLLKLLEECNASGI 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843797|emb|CAN79460.1| hypothetical protein VITISV_022546 [Vitis vinifera]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 119/155 (76%), Positives = 126/155 (81%), Gaps = 1/155 (0%)

Query: 1   MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFK 60
           MVGIFSRFSV RA HRRTQSA+DEREVLP N  VTGA       AAA   HGI+ AVEFK
Sbjct: 1   MVGIFSRFSVSRAAHRRTQSALDEREVLPSNSEVTGAA-NAVAVAAAVAPHGIEVAVEFK 59

Query: 61  PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVG 120
           PVEHP EPLDND P+QCPLPEPSILNDGRIWKERVSA +RRR+DL VMKEG  LESEA G
Sbjct: 60  PVEHPTEPLDNDRPVQCPLPEPSILNDGRIWKERVSASVRRRSDLSVMKEGNFLESEAAG 119

Query: 121 TKPPPNRPNRLILPSLSAPEHNLLKLLEECNASGI 155
             P P + NRLILPSLSAPEHNLL LLEECN+SGI
Sbjct: 120 KPPRPPQSNRLILPSLSAPEHNLLNLLEECNSSGI 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807636|ref|NP_001241166.1| uncharacterized protein LOC100791210 [Glycine max] gi|255638588|gb|ACU19601.1| unknown [Glycine max] gi|255638658|gb|ACU19634.1| unknown [Glycine max]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/155 (75%), Positives = 129/155 (83%), Gaps = 4/155 (2%)

Query: 1   MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFK 60
           MVGIFSRFSVGR  HRRTQSA+DEREV+PPNP    A      +AA A +HGI+ AVEFK
Sbjct: 1   MVGIFSRFSVGRNVHRRTQSALDEREVMPPNPEAVAA----VASAATATSHGIEVAVEFK 56

Query: 61  PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVG 120
           PVEHPIEPLDND PIQCPLPEPSILNDGRIWKERVSA + RR DLPVMKEGG LESE  G
Sbjct: 57  PVEHPIEPLDNDRPIQCPLPEPSILNDGRIWKERVSATVGRRGDLPVMKEGGTLESEDAG 116

Query: 121 TKPPPNRPNRLILPSLSAPEHNLLKLLEECNASGI 155
            +P  +R NR+ILPS+SAPEHN+LKLL+ECNASGI
Sbjct: 117 ARPRTSRSNRMILPSVSAPEHNILKLLDECNASGI 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427063|ref|XP_002274901.1| PREDICTED: uncharacterized protein LOC100257507 [Vitis vinifera] gi|297742009|emb|CBI33796.3| unnamed protein product [Vitis vinifera]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/155 (76%), Positives = 126/155 (81%), Gaps = 1/155 (0%)

Query: 1   MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFK 60
           MVGIFSRFSV RA HRRTQSA+DERE+LP N  VTGA       AAA   HGI+ AVEFK
Sbjct: 1   MVGIFSRFSVSRAAHRRTQSALDERELLPSNSEVTGAA-NAVAVAAAVAPHGIEVAVEFK 59

Query: 61  PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVG 120
           PVEHP EPLDND P+QCPLPEPSILNDGRIWKERVSA +RRR+DL VMKEG  LESEA G
Sbjct: 60  PVEHPTEPLDNDRPVQCPLPEPSILNDGRIWKERVSASVRRRSDLSVMKEGNFLESEAAG 119

Query: 121 TKPPPNRPNRLILPSLSAPEHNLLKLLEECNASGI 155
             P P + NRLILPSLSAPEHNLL LLEECN+SGI
Sbjct: 120 KPPRPPQSNRLILPSLSAPEHNLLNLLEECNSSGI 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484825|ref|XP_003612700.1| hypothetical protein MTR_5g027940 [Medicago truncatula] gi|355514035|gb|AES95658.1| hypothetical protein MTR_5g027940 [Medicago truncatula] gi|388502786|gb|AFK39459.1| unknown [Medicago truncatula]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 109/155 (70%), Positives = 122/155 (78%), Gaps = 6/155 (3%)

Query: 1   MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFK 60
           MVG+FSRFSVG+  HRRTQSA+DEREV P N   +      A +A  A +HGI+ AVEFK
Sbjct: 1   MVGLFSRFSVGKNIHRRTQSALDEREVTPAN---SEVAAAVAASATTATSHGIEVAVEFK 57

Query: 61  PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVG 120
           PVEHP+EPLDND PIQCPLPEPSILNDGRIWKER SA +RRR DLPVMKEGGA+ESE   
Sbjct: 58  PVEHPVEPLDNDRPIQCPLPEPSILNDGRIWKERASATVRRRGDLPVMKEGGAIESEGPA 117

Query: 121 TKPPPNRPNRLILPSLSAPEHNLLKLLEECNASGI 155
            +P  +  NR+ILPSLSAPEHNLLKLLEE   SGI
Sbjct: 118 PRPRRSHSNRMILPSLSAPEHNLLKLLEE---SGI 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398194|ref|NP_564386.1| uncharacterized protein [Arabidopsis thaliana] gi|17978974|gb|AAL47448.1| At1g31940/F5M6.6 [Arabidopsis thaliana] gi|20334862|gb|AAM16187.1| At1g31940/F5M6.6 [Arabidopsis thaliana] gi|21554317|gb|AAM63422.1| unknown [Arabidopsis thaliana] gi|332193299|gb|AEE31420.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/153 (70%), Positives = 120/153 (78%), Gaps = 5/153 (3%)

Query: 1   MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFK 60
           MVGIFSRFSVGR+ HRRTQSAID++EVL PN  V  A     TT A    HGI+ A EFK
Sbjct: 1   MVGIFSRFSVGRSTHRRTQSAIDDKEVLAPNSDVIAA----TTTTATTATHGIEVATEFK 56

Query: 61  PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESE-AV 119
           PVEHP+EPLDNDLPIQCPLPEPSILNDGRIWKERVSA MRR+ DL ++K+  A ES+ + 
Sbjct: 57  PVEHPVEPLDNDLPIQCPLPEPSILNDGRIWKERVSASMRRKGDLQIVKDEAASESDGSA 116

Query: 120 GTKPPPNRPNRLILPSLSAPEHNLLKLLEECNA 152
              P P +PNR ILPSLSAPEHNLL LLEECNA
Sbjct: 117 PKPPRPPQPNRSILPSLSAPEHNLLNLLEECNA 149

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456751|ref|XP_004146112.1| PREDICTED: uncharacterized protein LOC101208810 isoform 1 [Cucumis sativus] gi|449509510|ref|XP_004163609.1| PREDICTED: uncharacterized LOC101208810 isoform 1 [Cucumis sativus]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/150 (69%), Positives = 115/150 (76%), Gaps = 14/150 (9%)

Query: 1   MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFK 60
           MVGIFSRFS  R GHRR QSA+D RE LPPNP  TG    +AT+A A+  HGI+ AVEFK
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGV---SATSATAS--HGIEVAVEFK 55

Query: 61  PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVG 120
           PVEHPIEPLDND PIQCPLPEPSILNDGRIWKERVS+ MR+  DLPVMK     E+E   
Sbjct: 56  PVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSS-MRKLPDLPVMK-----EAEVGE 109

Query: 121 TKPPPNRPNRLILPSLSAPEHNLLKLLEEC 150
           T+P   RP R ILPS+SAPEHN+L LLEE 
Sbjct: 110 TRP---RPTRTILPSISAPEHNILNLLEES 136

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823351|ref|XP_002879558.1| hypothetical protein ARALYDRAFT_902663 [Arabidopsis lyrata subsp. lyrata] gi|297325397|gb|EFH55817.1| hypothetical protein ARALYDRAFT_902663 [Arabidopsis lyrata subsp. lyrata]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 103/158 (65%), Positives = 113/158 (71%), Gaps = 9/158 (5%)

Query: 1   MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFK 60
           MVGIFSRFSV R GHRRTQSAID REVL P    +   P   TT AA   HGI+ A EFK
Sbjct: 1   MVGIFSRFSVVRGGHRRTQSAIDGREVLSPR---SDLAPSANTTTAAT--HGIEVATEFK 55

Query: 61  PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAG-MRRRADLPVMKEGGALESEAV 119
           PV+HP+EPLDND PIQCPLPEPSILNDGR+WKER+SA  MRRR DL + ++G   ES+  
Sbjct: 56  PVDHPMEPLDNDQPIQCPLPEPSILNDGRLWKERLSANSMRRRDDLAIAQDGMDEESDVS 115

Query: 120 GTKP---PPNRPNRLILPSLSAPEHNLLKLLEECNASG 154
            T P        NR ILPSLSAPEHNLL LLEEC  SG
Sbjct: 116 VTIPSRASQCNTNRPILPSLSAPEHNLLNLLEECKVSG 153

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851628|ref|XP_002893695.1| hypothetical protein ARALYDRAFT_473384 [Arabidopsis lyrata subsp. lyrata] gi|297339537|gb|EFH69954.1| hypothetical protein ARALYDRAFT_473384 [Arabidopsis lyrata subsp. lyrata]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 103/153 (67%), Positives = 114/153 (74%), Gaps = 5/153 (3%)

Query: 1   MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAAVEFK 60
           MVGIFSRFSVGR+ HRRTQSAID++EVL PN      V    TT A    HGI+ A EFK
Sbjct: 1   MVGIFSRFSVGRSSHRRTQSAIDDKEVLAPN----SDVAAATTTTATTATHGIEVATEFK 56

Query: 61  PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESE-AV 119
           PVEHP+EPLDN LPIQCPLPEPSILNDGRIWKERVSA M R+ DL   K+  A ES+ + 
Sbjct: 57  PVEHPVEPLDNHLPIQCPLPEPSILNDGRIWKERVSASMMRKGDLQTAKDEAASESDGSA 116

Query: 120 GTKPPPNRPNRLILPSLSAPEHNLLKLLEECNA 152
              P P +PNR ILPSLSAPEHNLL LLEEC+ 
Sbjct: 117 PKPPRPPQPNRSILPSLSAPEHNLLNLLEECST 149

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2034441	158	AT1G31940 [Arabidopsis thalian	0.954	0.936	0.601	1.1e-41
TAIR|locus:505006293	156	AT2G35585 "AT2G35585" [Arabido	0.961	0.955	0.540	1.3e-36
TAIR|locus:1009023183	138	AT2G01913 "AT2G01913" [Arabido	0.180	0.202	0.607	6.3e-05

TAIR|locus:2034441 AT1G31940 [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 92/153 (60%), Positives = 101/153 (66%)

Query:     1 MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPXXXXXXXXXXXXXXXXXXXXXXXXXEFK 60
             MVGIFSRFSVGR+ HRRTQSAID++EVL PN                          EFK
Sbjct:     1 MVGIFSRFSVGRSTHRRTQSAIDDKEVLAPN----SDVIAATTTTATTATHGIEVATEFK 56

Query:    61 PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAGMRRRADLPVMKEGGALESEAVG 120
             PVEHP+EPLDNDLPIQCPLPEPSILNDGRIWKERVSA MRR+ DL ++K+  A ES+   
Sbjct:    57 PVEHPVEPLDNDLPIQCPLPEPSILNDGRIWKERVSASMRRKGDLQIVKDEAASESDGSA 116

Query:   121 TKXXXXXXXXXXXX-SLSAPEHNLLKLLEECNA 152
              K             SLSAPEHNLL LLEECNA
Sbjct:   117 PKPPRPPQPNRSILPSLSAPEHNLLNLLEECNA 149

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:505006293 AT2G35585 "AT2G35585" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 86/159 (54%), Positives = 100/159 (62%)

Query:     1 MVGIFSRFSVGRAGHRRTQSAIDEREVLPPNPXXXXXXXXXXXXXXXXXXXXXXXXXEFK 60
             MVGIFSRFSV R  HRRTQSAID REVL P                           EFK
Sbjct:     1 MVGIFSRFSVVRGSHRRTQSAIDGREVLSPR-----SDLAPATNTTTTETHGIEVATEFK 55

Query:    61 PVEHPIEPLDNDLPIQCPLPEPSILNDGRIWKERVSAG-MRRRADLPVMKEGGALESE-- 117
             PV+HP+EPLDND PIQCPLPEPSILNDGR+WKERVSA  MRRR+DL ++++G   ES+  
Sbjct:    56 PVDHPMEPLDNDQPIQCPLPEPSILNDGRLWKERVSASSMRRRSDLAIVQDGMDEESDVS 115

Query:   118 --AVGTKXXXXXXXXXXXXSLSAPEHNLLKLLEECNASG 154
               ++ ++            SLSAPEH+LL LLEEC  SG
Sbjct:   116 VTSIPSRTSQCNTNRPILPSLSAPEHDLLNLLEECKVSG 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023183 AT2G01913 "AT2G01913" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 17/28 (60%), Positives = 21/28 (75%)

Query:    58 EFKPVEHPIEPLDNDLPIQCPLPEPSIL 85
             EF PVEHPIEP + D P++CP+P  S L
Sbjct:    30 EFCPVEHPIEPEEEDRPVKCPVPISSSL 57


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.136   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      155       118   0.00091  102 3  11 22  0.40    31
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  561 (60 KB)
  Total size of DFA:  123 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.31u 0.14s 10.45t   Elapsed:  00:00:01
  Total cpu time:  10.31u 0.14s 10.45t   Elapsed:  00:00:01
  Start:  Thu May  9 17:23:49 2013   End:  Thu May  9 17:23:50 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_290272 hypothetical protein (152 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00