Citrus Sinensis ID: 031653

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHccccccccccEEcccccHHHHHcccHHHHHHHccHHHHHcccccccccHHHHHHHHHHHHHHcccccccccEEEEccccEEcccccccEEEEEccccccEEEEcccccEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHcHcHHHHHHHccccccEEEEEccccHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHEHccccEEEEcHHHccEEEEEcccEEEEEEEEccHHHcccccEEEcccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
MADGDADVAVAAAaglpkkrtfkkfsfrgvdldaLLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAkreappgekpepvrtHLRNMIIVPEMIGSIIGvyngktfnqveikpeMIGHYLAEFsisykpvkhgrpgigathssrfiplk
Flexible Loop (DISEMBL)
MADGDADVAVAaaaglpkkrtfkkfSFRGVDLDALLDMSNDELVKLFSARArrrfqrglkrkpmalikklrkakreappgekpepvrthLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHgrpgigathssrfiplk
Low Complexity Region (SEG)
MadgdadvavaaaagLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Disordered region (IsUnstruct)
***********AAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARA************************************THLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH*****************
Disordered Region (DISOPRED)
**********************KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKL****************RTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Disordered Region (DISEMBL)
MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKK**************EPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Disordered Region (DISPRO)
****************PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGI*ATHS*R*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
O65059	151	40S ribosomal protein S15	N/A	no	0.974	1.0	0.890	2e-74
P31674	154	40S ribosomal protein S15	yes	no	0.993	1.0	0.870	8e-74
Q945U1	153	40S ribosomal protein S15	N/A	no	0.974	0.986	0.894	8e-74
Q9FY65	150	40S ribosomal protein S15	yes	no	0.929	0.96	0.888	3e-69
Q9FY64	152	40S ribosomal protein S15	no	no	0.980	1.0	0.883	5e-68
Q08112	152	40S ribosomal protein S15	no	no	0.980	1.0	0.883	5e-68
Q9FY66	152	40S ribosomal protein S15	no	no	0.980	1.0	0.793	7e-66
P34737	152	40S ribosomal protein S15	yes	no	0.980	1.0	0.735	3e-62
Q9FIX6	149	40S ribosomal protein S15	no	no	0.935	0.973	0.875	5e-62
Q9UTQ6	154	40S ribosomal protein S15	yes	no	0.993	1.0	0.683	2e-56

>sp|O65059|RS15_PICMA 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1

 Score =  277 bits (708), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/155 (89%), Positives = 143/155 (92%), Gaps = 4/155 (2%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MAD D DV        PKKRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRFQRGLK
Sbjct: 1   MADADVDVGPVQ----PKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLK 56

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           R+PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 57  RQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 116

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 117 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Picea mariana (taxid: 3335)

>sp|P31674|RS15_ORYSJ 40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2

 Score =  275 bits (703), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 135/155 (87%), Positives = 145/155 (93%), Gaps = 1/155 (0%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MAD + +  VAA A  PKKRTF+K+S+RGVDLDALLDMS D+LV+LF ARARRRFQRGLK
Sbjct: 1   MADVEVETEVAAGAQ-PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLK 59

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPE
Sbjct: 60  RKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPE 119

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 120 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q945U1|RS15_ELAOL 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1

 Score =  275 bits (703), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 135/151 (89%), Positives = 138/151 (91%)

Query: 5   DADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPM 64
           D   AV      PKKRTF+KFS+RGVDLD LLDM  DELVKLF ARARRRFQRGLKRKPM
Sbjct: 3   DVSDAVDVGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKPM 62

Query: 65  ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 124
           ALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH
Sbjct: 63  ALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 122

Query: 125 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           YLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 123 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

Elaeis oleifera (taxid: 80265)

>sp|Q9FY65|RS153_ARATH 40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1

 Score =  260 bits (664), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/144 (88%), Positives = 134/144 (93%)

Query: 12  AAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLR 71
           AAAG+ KKRTFKKFSFRGVDLDALLDMS D+LVKLF +R RRRF RGL RKPMALIKKLR
Sbjct: 7   AAAGIVKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLR 66

Query: 72  KAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 131
           KAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSI
Sbjct: 67  KAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSI 126

Query: 132 SYKPVKHGRPGIGATHSSRFIPLK 155
           SYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 127 SYKPVKHGRPGVGATNSSRFIPLK 150

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY64|RS154_ARATH 40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1

 Score =  256 bits (653), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 137/155 (88%), Positives = 145/155 (93%), Gaps = 3/155 (1%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MAD + +VA   AAG+PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL 
Sbjct: 1   MADVEPEVA---AAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLT 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 118 MIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q08112|RS151_ARATH 40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1

 Score =  256 bits (653), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 137/155 (88%), Positives = 145/155 (93%), Gaps = 3/155 (1%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MAD + +VA   AAG+PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL 
Sbjct: 1   MADVEPEVA---AAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLT 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 118 MIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY66|RS152_ARATH 40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1

 Score =  248 bits (634), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 123/155 (79%), Positives = 137/155 (88%), Gaps = 3/155 (1%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MA+ + DV+   AA L KKRTFKKFSF+GVDLDALLDM  D+LV+LF +R RRR  RGL 
Sbjct: 1   MAEVEPDVS---AAALAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLT 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPE
Sbjct: 58  RKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct: 118 MIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|P34737|RS15_PODAS 40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1

 Score =  236 bits (603), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 133/155 (85%), Gaps = 3/155 (1%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MAD   +     AA L KKRTF+KFS+RGVDLDALLD+++DEL  +  ARARR+  RGLK
Sbjct: 1   MAD---EYNAEEAAELKKKRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLK 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           R+PM LIKKLRKAK+EA P EKP+ V+THLR+MI+VPEMIGS++G+Y+GK FNQVEIKPE
Sbjct: 58  RRPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           M+GHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 118 MVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Podospora anserina (taxid: 5145)

>sp|Q9FIX6|RS155_ARATH 40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=3 SV=1

 Score =  236 bits (602), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 127/145 (87%), Positives = 133/145 (91%)

Query: 11  AAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKL 70
             AAG+ KKRTFKKFSFRGVDLDALLDMS ++LVK FS+R RRRF RGL RKPMALIKKL
Sbjct: 5   VVAAGIVKKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKL 64

Query: 71  RKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFS 130
           RKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFS
Sbjct: 65  RKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFS 124

Query: 131 ISYKPVKHGRPGIGATHSSRFIPLK 155
           ISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 125 ISYKPVKHGRPGVGATNSSRFIPLK 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UTQ6|RS15B_SCHPO 40S ribosomal protein S15-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps15b PE=1 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 125/155 (80%), Gaps = 1/155 (0%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MA+ + D AV  A  L KKRTF+ F++RGV+L+ LLD+S ++LV LF ARARRR  RGL 
Sbjct: 1   MAEENHDEAVRVAE-LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLG 59

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
                 I+KLRKAK EAP  EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PE
Sbjct: 60  PNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPE 119

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYL EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct: 120 MIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
388506830	153	unknown [Lotus japonicus]	0.980	0.993	0.940	1e-76
255559955	152	40S ribosomal protein S15, putative [Ric	0.980	1.0	0.935	2e-76
313586481	151	40S ribosomal protein S15D [Hevea brasil	0.967	0.993	0.953	3e-76
255551941	151	40S ribosomal protein S15, putative [Ric	0.967	0.993	0.94	4e-76
225432923	151	PREDICTED: 40S ribosomal protein S15-lik	0.967	0.993	0.953	4e-76
388507654	151	unknown [Lotus japonicus]	0.967	0.993	0.946	7e-76
223469631	151	40S ribosomal protein S15-like protein [	0.967	0.993	0.946	8e-76
224062213	152	predicted protein [Populus trichocarpa]	0.980	1.0	0.929	8e-76
224107915	152	predicted protein [Populus trichocarpa]	0.980	1.0	0.929	1e-75
388518697	152	unknown [Medicago truncatula]	0.980	1.0	0.922	2e-75

>gi|388506830|gb|AFK41481.1| unknown [Lotus japonicus]

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 143/152 (94%), Positives = 145/152 (95%)

Query: 4   GDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKP 63
            D +V VAAA G+PKKRTFKKFSFRGVDLDALLDMS DELVKLFSARARRRFQRGL RKP
Sbjct: 2   ADVEVDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKP 61

Query: 64  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 123
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 124 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559955|ref|XP_002520996.1| 40S ribosomal protein S15, putative [Ricinus communis] gi|223539833|gb|EEF41413.1| 40S ribosomal protein S15, putative [Ricinus communis]

 Score =  289 bits (740), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/155 (93%), Positives = 147/155 (94%), Gaps = 3/155 (1%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MAD D DVA   A G PKKRTFKKFSFRGVDLDALLDMS DELVKLF+ARARRRFQRGLK
Sbjct: 1   MADVDGDVA---APGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLK 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 118 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586481|gb|ADR71251.1| 40S ribosomal protein S15D [Hevea brasiliensis]

 Score =  289 bits (739), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 143/150 (95%), Positives = 143/150 (95%)

Query: 6   ADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMA 65
           ADV    AAG PKKRTFKKFSFRGVDLDALLDMS DELVKLF ARARRRFQRGLKRKPMA
Sbjct: 2   ADVETEVAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFHARARRRFQRGLKRKPMA 61

Query: 66  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 125
           LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY
Sbjct: 62  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 121

Query: 126 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           LAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551941|ref|XP_002517015.1| 40S ribosomal protein S15, putative [Ricinus communis] gi|223543650|gb|EEF45178.1| 40S ribosomal protein S15, putative [Ricinus communis]

 Score =  288 bits (738), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 141/150 (94%), Positives = 143/150 (95%)

Query: 6   ADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMA 65
           ADV    A G PKKRTFKKFSFRGVDLDALLDMS DELVKLF+ARARRRFQRGLKRKPMA
Sbjct: 2   ADVETEVATGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKPMA 61

Query: 66  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 125
           LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHY
Sbjct: 62  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHY 121

Query: 126 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           LAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432923|ref|XP_002284241.1| PREDICTED: 40S ribosomal protein S15-like isoform 1 [Vitis vinifera] gi|359477606|ref|XP_003632002.1| PREDICTED: 40S ribosomal protein S15-like isoform 2 [Vitis vinifera]

 Score =  288 bits (738), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 143/150 (95%), Positives = 144/150 (96%)

Query: 6   ADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMA 65
           ADV V  A G+PKKRTFKKFSFRGVDLDALLDMS DELVKLF ARARRRFQRGLKRKPMA
Sbjct: 2   ADVEVDVAPGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFHARARRRFQRGLKRKPMA 61

Query: 66  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 125
           LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY
Sbjct: 62  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 121

Query: 126 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           LAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507654|gb|AFK41893.1| unknown [Lotus japonicus]

 Score =  288 bits (736), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 142/150 (94%), Positives = 143/150 (95%)

Query: 6   ADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMA 65
           ADV    AAG+PKKRTFKKFSFRGVDLDALLDMS DELVKLFSARARRRFQRGL RKPMA
Sbjct: 2   ADVETDVAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMA 61

Query: 66  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 125
           LIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY
Sbjct: 62  LIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 121

Query: 126 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           LAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223469631|gb|ACM90156.1| 40S ribosomal protein S15-like protein [Jatropha curcas]

 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 142/150 (94%), Positives = 143/150 (95%)

Query: 6   ADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMA 65
           ADV    AAG PKKRTFKKFSFRGVDLDALLDM+ DELVKLF ARARRRFQRGLKRKPMA
Sbjct: 2   ADVETEVAAGQPKKRTFKKFSFRGVDLDALLDMTTDELVKLFPARARRRFQRGLKRKPMA 61

Query: 66  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 125
           LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY
Sbjct: 62  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 121

Query: 126 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           LAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062213|ref|XP_002300796.1| predicted protein [Populus trichocarpa] gi|118484748|gb|ABK94243.1| unknown [Populus trichocarpa] gi|118485182|gb|ABK94452.1| unknown [Populus trichocarpa] gi|118488047|gb|ABK95844.1| unknown [Populus trichocarpa] gi|222842522|gb|EEE80069.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (735), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 144/155 (92%), Positives = 146/155 (94%), Gaps = 3/155 (1%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MAD + DVA   AAG PKKRTFKKFSFRGVDLDALLDMS DELVKLF ARARRRFQRGLK
Sbjct: 1   MADVETDVA---AAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFPARARRRFQRGLK 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MI HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 118 MISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107915|ref|XP_002314652.1| predicted protein [Populus trichocarpa] gi|222863692|gb|EEF00823.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 144/155 (92%), Positives = 146/155 (94%), Gaps = 3/155 (1%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MAD D +VA   AAG PKKRTFKKFSFRGVDLDALLDMS DELVKLF+ARARRRFQRGLK
Sbjct: 1   MADVDTEVA---AAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFNARARRRFQRGLK 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLR AKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRTAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 118 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518697|gb|AFK47410.1| unknown [Medicago truncatula]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/155 (92%), Positives = 147/155 (94%), Gaps = 3/155 (1%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MAD + +VA   A G+PKKRTFKKFSFRGVDLDALLDMS DELVKLFS+RARRRFQRGL 
Sbjct: 1   MADVEPEVA---AQGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSSRARRRFQRGLT 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 118 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2018324	152	RPS15 "cytosolic ribosomal pro	0.903	0.921	0.921	2.8e-66
TAIR|locus:2184772	152	AT5G09510 [Arabidopsis thalian	0.903	0.921	0.921	2.8e-66
TAIR|locus:2184752	150	AT5G09500 [Arabidopsis thalian	0.890	0.92	0.898	2.3e-62
TAIR|locus:2158382	149	AT5G43640 [Arabidopsis thalian	0.890	0.926	0.898	1e-61
FB|FBgn0034138	148	RpS15 "Ribosomal protein S15"	0.903	0.945	0.828	8.1e-60
TAIR|locus:2184847	152	AT5G09490 [Arabidopsis thalian	0.903	0.921	0.835	8.1e-60
ZFIN|ZDB-GENE-030131-9092	145	rps15 "ribosomal protein S15"	0.890	0.951	0.775	7.5e-57
UNIPROTKB|F1NNC3	153	RPS15 "40S ribosomal protein S	0.890	0.901	0.782	9.6e-57
UNIPROTKB|F2Z4M3	144	RPS15 "40S ribosomal protein S	0.890	0.958	0.782	9.6e-57
UNIPROTKB|P62846	145	RPS15 "40S ribosomal protein S	0.890	0.951	0.782	9.6e-57

TAIR|locus:2018324 RPS15 "cytosolic ribosomal protein S15" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 129/140 (92%), Positives = 135/140 (96%)

Query:    16 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKR 75
             +PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALIKKLRKAKR
Sbjct:    13 VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKR 72

Query:    76 EAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 135
             EAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP
Sbjct:    73 EAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 132

Query:   136 VKHGRPGIGATHSSRFIPLK 155
             VKHGRPG+GATHSSRFIPLK
Sbjct:   133 VKHGRPGVGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2184772 AT5G09510 [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 129/140 (92%), Positives = 135/140 (96%)

Query:    16 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKR 75
             +PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALIKKLRKAKR
Sbjct:    13 VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKR 72

Query:    76 EAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 135
             EAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP
Sbjct:    73 EAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 132

Query:   136 VKHGRPGIGATHSSRFIPLK 155
             VKHGRPG+GATHSSRFIPLK
Sbjct:   133 VKHGRPGVGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2184752 AT5G09500 [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 124/138 (89%), Positives = 129/138 (93%)

Query:    18 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
             KKRTFKKFSFRGVDLDALLDMS D+LVKLF +R RRRF RGL RKPMALIKKLRKAK EA
Sbjct:    13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72

Query:    78 PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
             P GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK
Sbjct:    73 PAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 132

Query:   138 HGRPGIGATHSSRFIPLK 155
             HGRPG+GAT+SSRFIPLK
Sbjct:   133 HGRPGVGATNSSRFIPLK 150

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2158382 AT5G43640 [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 124/138 (89%), Positives = 129/138 (93%)

Query:    18 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
             KKRTFKKFSFRGVDLDALLDMS ++LVK FS+R RRRF RGL RKPMALIKKLRKAK EA
Sbjct:    12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71

Query:    78 PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
             P GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK
Sbjct:    72 PAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 131

Query:   138 HGRPGIGATHSSRFIPLK 155
             HGRPG+GAT+SSRFIPLK
Sbjct:   132 HGRPGVGATNSSRFIPLK 149

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

FB|FBgn0034138 RpS15 "Ribosomal protein S15" [Drosophila melanogaster (taxid:7227)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 116/140 (82%), Positives = 128/140 (91%)

Query:    16 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKR 75
             L KKRTFKKF++RGVDLD LLDM N++LV+L  +RARRRF RGLKRKPMALIKKLRKAK+
Sbjct:     9 LKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKAKK 68

Query:    76 EAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 135
             EAPP EKPE V+THLRNMIIVPEM GSIIGVYNGK F QVE+KPEMIGHYL EF+++YKP
Sbjct:    69 EAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKP 128

Query:   136 VKHGRPGIGATHSSRFIPLK 155
             VKHGRPGIGATHSSRFIPLK
Sbjct:   129 VKHGRPGIGATHSSRFIPLK 148

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

TAIR|locus:2184847 AT5G09490 [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 117/140 (83%), Positives = 128/140 (91%)

Query:    16 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKR 75
             L KKRTFKKFSF+GVDLDALLDM  D+LV+LF +R RRR  RGL RKPMALIKKLRKAK 
Sbjct:    13 LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72

Query:    76 EAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 135
             +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIGHYLAEFSI+YKP
Sbjct:    73 DAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKP 132

Query:   136 VKHGRPGIGATHSSRFIPLK 155
             V+HG+PG GATHSSRFIPLK
Sbjct:   133 VRHGKPGHGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

ZFIN|ZDB-GENE-030131-9092 rps15 "ribosomal protein S15" [Danio rerio (taxid:7955)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 107/138 (77%), Positives = 128/138 (92%)

Query:    18 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
             KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EA
Sbjct:     8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQQSLLKRLRKAKKEA 67

Query:    78 PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
             PP EKPE V+THLR+M+I+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVK
Sbjct:    68 PPMEKPEVVKTHLRDMVILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVK 127

Query:   138 HGRPGIGATHSSRFIPLK 155
             HGRPGIGATHSSRFIPLK
Sbjct:   128 HGRPGIGATHSSRFIPLK 145

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1NNC3 RPS15 "40S ribosomal protein S15" [Gallus gallus (taxid:9031)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 108/138 (78%), Positives = 128/138 (92%)

Query:    18 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
             KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EA
Sbjct:    16 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEA 75

Query:    78 PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
             PP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVK
Sbjct:    76 PPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVK 135

Query:   138 HGRPGIGATHSSRFIPLK 155
             HGRPGIGATHSSRFIPLK
Sbjct:   136 HGRPGIGATHSSRFIPLK 153

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

UNIPROTKB|F2Z4M3 RPS15 "40S ribosomal protein S15" [Gallus gallus (taxid:9031)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 108/138 (78%), Positives = 128/138 (92%)

Query:    18 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
             KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EA
Sbjct:     7 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEA 66

Query:    78 PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
             PP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVK
Sbjct:    67 PPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVK 126

Query:   138 HGRPGIGATHSSRFIPLK 155
             HGRPGIGATHSSRFIPLK
Sbjct:   127 HGRPGIGATHSSRFIPLK 144

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

UNIPROTKB|P62846 RPS15 "40S ribosomal protein S15" [Gallus gallus (taxid:9031)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 108/138 (78%), Positives = 128/138 (92%)

Query:    18 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
             KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EA
Sbjct:     8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEA 67

Query:    78 PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
             PP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVK
Sbjct:    68 PPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVK 127

Query:   138 HGRPGIGATHSSRFIPLK 155
             HGRPGIGATHSSRFIPLK
Sbjct:   128 HGRPGIGATHSSRFIPLK 145

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4YCX0	RS19_METS5	No assigned EC number	0.4552	0.8451	0.9357	yes	no
Q8ZWL4	RS19_PYRAE	No assigned EC number	0.5149	0.8580	0.8417	yes	no
C5A282	RS19_THEGJ	No assigned EC number	0.5187	0.8322	0.9699	yes	no
Q9UXA3	RS19_SULSO	No assigned EC number	0.4626	0.8451	0.9357	yes	no
Q9YF74	RS19_AERPE	No assigned EC number	0.5076	0.8258	0.8888	yes	no
O65059	RS15_PICMA	No assigned EC number	0.8903	0.9741	1.0	N/A	no
Q975I5	RS19_SULTO	No assigned EC number	0.4925	0.8451	0.9357	yes	no
C6A163	RS19_THESM	No assigned EC number	0.4661	0.8322	0.9699	yes	no
Q9XVP0	RS15_CAEEL	No assigned EC number	0.6965	0.9354	0.9602	yes	no
Q18GF3	RS19_HALWD	No assigned EC number	0.4736	0.8258	0.9142	yes	no
Q08112	RS151_ARATH	No assigned EC number	0.8838	0.9806	1.0	no	no
P34737	RS15_PODAS	No assigned EC number	0.7354	0.9806	1.0	yes	no
A3DNB1	RS19_STAMF	No assigned EC number	0.5223	0.8580	0.9300	yes	no
P62845	RS15_RAT	No assigned EC number	0.7826	0.8903	0.9517	yes	no
A2BMB3	RS19_HYPBU	No assigned EC number	0.5074	0.8580	0.9236	yes	no
Q5JDH3	RS19_PYRKO	No assigned EC number	0.5187	0.8322	0.9699	yes	no
P54018	RS19_METJA	No assigned EC number	0.4924	0.8516	0.8684	yes	no
P31674	RS15_ORYSJ	No assigned EC number	0.8709	0.9935	1.0	yes	no
Q56K10	RS15_BOVIN	No assigned EC number	0.7753	0.8903	0.9517	yes	no
Q01855	RS15_YEAST	No assigned EC number	0.6666	0.8709	0.9507	yes	no
Q5RDI7	RS15_PONAB	No assigned EC number	0.7826	0.8903	0.9517	no	no
O59422	RS19_PYRHO	No assigned EC number	0.5263	0.8322	0.9772	yes	no
P62842	RS15_MESAU	No assigned EC number	0.7826	0.8903	0.9517	N/A	no
P62843	RS15_MOUSE	No assigned EC number	0.7826	0.8903	0.9517	yes	no
P62841	RS15_HUMAN	No assigned EC number	0.7826	0.8903	0.9517	yes	no
P62846	RS15_CHICK	No assigned EC number	0.7826	0.8903	0.9517	yes	no
P62844	RS15_PIG	No assigned EC number	0.7826	0.8903	0.9517	yes	no
O94715	RS15A_SCHPO	No assigned EC number	0.6774	0.9870	1.0	yes	no
Q4JB44	RS19_SULAC	No assigned EC number	0.4776	0.8451	0.9357	yes	no
Q8U002	RS19_PYRFU	No assigned EC number	0.5263	0.8322	0.9772	yes	no
B9LSS3	RS19_HALLT	No assigned EC number	0.4632	0.8580	0.9432	yes	no
B6YSL7	RS19_THEON	No assigned EC number	0.5037	0.8322	0.9699	yes	no
O26114	RS19_METTH	No assigned EC number	0.4586	0.8580	0.9779	yes	no
P15010	RS19_HALSA	No assigned EC number	0.4469	0.8322	0.9214	yes	no
Q9UTQ6	RS15B_SCHPO	No assigned EC number	0.6838	0.9935	1.0	yes	no
P20342	RS15_XENLA	No assigned EC number	0.7519	0.8322	0.8896	N/A	no
A5UL85	RS19_METS3	No assigned EC number	0.4586	0.8580	0.9779	yes	no
Q9FIX6	RS155_ARATH	No assigned EC number	0.8758	0.9354	0.9731	no	no
Q3IMY4	RS19_NATPD	No assigned EC number	0.4696	0.8322	0.9214	yes	no
P20284	RS19_HALMA	No assigned EC number	0.4696	0.8322	0.9214	yes	no
Q945U1	RS15_ELAOL	No assigned EC number	0.8940	0.9741	0.9869	N/A	no
P70066	RS15_XIPMA	No assigned EC number	0.7291	0.9290	0.9931	N/A	no
Q9V1T9	RS19_PYRAB	No assigned EC number	0.5263	0.8322	0.9772	yes	no
B0R660	RS19_HALS3	No assigned EC number	0.4469	0.8322	0.9214	yes	no
Q9FY65	RS153_ARATH	No assigned EC number	0.8888	0.9290	0.96	yes	no
Q9FY64	RS154_ARATH	No assigned EC number	0.8838	0.9806	1.0	no	no
Q54N17	RS15_DICDI	No assigned EC number	0.6258	0.8903	0.9583	yes	no
Q9FY66	RS152_ARATH	No assigned EC number	0.7935	0.9806	1.0	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020133001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (185 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025575001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)	•			•	•	•	•		0.984
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)	•			•	•	•	•		0.972
	GSVIVG00034206001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)	•			•	•	•	•		0.963
	GSVIVG00016417001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)	•			•	•	•	•		0.952
	GSVIVG00005647001	SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (159 aa)	•			•	•	•	•		0.948
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•	•	•	•		0.924
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)				•	•	•	•		0.918
	GSVIVG00024035001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (246 aa)	•			•	•	•			0.899
	GSVIVG00001285001	SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (246 aa)	•			•	•	•			0.895
	GSVIVG00034021001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence;; Required for the asse [...] (274 aa)				•	•	•	•		0.892

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
PTZ00096	143	PTZ00096, PTZ00096, 40S ribosomal protein S15; Pro	6e-90
TIGR01025	135	TIGR01025, rpsS_arch, ribosomal protein S19(archae	2e-76
PRK04038	134	PRK04038, rps19p, 30S ribosomal protein S19P; Prov	7e-59
pfam00203	81	pfam00203, Ribosomal_S19, Ribosomal protein S19	1e-40
COG0185	93	COG0185, RpsS, Ribosomal protein S19 [Translation,	2e-37
PRK00357	92	PRK00357, rpsS, 30S ribosomal protein S19; Reviewe	6e-13
TIGR01050	92	TIGR01050, rpsS_bact, ribosomal protein S19, bacte	3e-12
CHL00050	92	CHL00050, rps19, ribosomal protein S19	3e-10

>gnl|CDD|185442 PTZ00096, PTZ00096, 40S ribosomal protein S15; Provisional

 Score =  257 bits (659), Expect = 6e-90
 Identities = 99/143 (69%), Positives = 119/143 (83%)

Query: 11  AAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKL 70
                L KKRTFKKF++RGV+L+ LL +  +ELV+LF AR RRR  RG+KRK   L+KKL
Sbjct: 1   EMYEQLKKKRTFKKFTYRGVELEKLLALPEEELVELFRARQRRRINRGIKRKHPTLLKKL 60

Query: 71  RKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFS 130
           RKAK+   PGEKP+ V+THLR+MIIVPEM+GS++GVYNGK FN VEIKPEMIGHYL EFS
Sbjct: 61  RKAKKATKPGEKPKAVKTHLRDMIIVPEMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEFS 120

Query: 131 ISYKPVKHGRPGIGATHSSRFIP 153
           I+YKPV+HG+PG+GATHSSRFIP
Sbjct: 121 ITYKPVRHGKPGVGATHSSRFIP 143

Length = 143

>gnl|CDD|130097 TIGR01025, rpsS_arch, ribosomal protein S19(archaeal)/S15(eukaryotic)

 Score =  223 bits (569), Expect = 2e-76
 Identities = 95/135 (70%), Positives = 109/135 (80%)

Query: 21  TFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPG 80
           TFK+F +RG  L+ L DMS +EL KL  AR RRR +RGL  K   L+KKLRKAK+EAP G
Sbjct: 1   TFKEFRYRGYTLEELQDMSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLRKAKKEAPKG 60

Query: 81  EKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR 140
           EKPE +RTH R+MII+PEM+GS +GVYNGK F QVEIKPEMIGHYL EFSI+ KPVKHGR
Sbjct: 61  EKPEVIRTHCRDMIILPEMVGSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITRKPVKHGR 120

Query: 141 PGIGATHSSRFIPLK 155
           PGIGAT SS F+PLK
Sbjct: 121 PGIGATRSSMFVPLK 135

This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 135

>gnl|CDD|235209 PRK04038, rps19p, 30S ribosomal protein S19P; Provisional

 Score =  178 bits (455), Expect = 7e-59
 Identities = 72/133 (54%), Positives = 98/133 (73%), Gaps = 3/133 (2%)

Query: 23  KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEK 82
           K+F++RG  L+ L +MS +E  +L  AR RR  +RGL  +   L++K+RKA+RE    +K
Sbjct: 5   KEFTYRGYTLEELQEMSLEEFAELLPARQRRSLKRGLTPEQRKLLEKIRKARRE---KKK 61

Query: 83  PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 142
              +RTH+R+MII+PEM+G  I VYNGK F +VEI PEMIGHYL EF+++ K V+HG PG
Sbjct: 62  GRVIRTHVRDMIILPEMVGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTRKRVQHGSPG 121

Query: 143 IGATHSSRFIPLK 155
           IGAT SS+F+PLK
Sbjct: 122 IGATRSSKFVPLK 134

Length = 134

>gnl|CDD|201079 pfam00203, Ribosomal_S19, Ribosomal protein S19

 Score =  130 bits (329), Expect = 1e-40
 Identities = 40/82 (48%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +K LRK K+E    EK E ++T  R   I+PEM+G  I VYNGK F  V 
Sbjct: 1   RSLKKGPFVDLKLLRKIKKENTKNEK-EVIKTWSRRSTILPEMVGHTIAVYNGKEFVPVY 59

Query: 117 IKPEMIGHYLAEFSISYKPVKH 138
           I PEM+GH L EF+ + K V H
Sbjct: 60  ITPEMVGHKLGEFAPTRKFVGH 81

Length = 81

>gnl|CDD|223263 COG0185, RpsS, Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

 Score =  122 bits (309), Expect = 2e-37
 Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 51  ARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGK 110
            RR  ++G       L+KK+RKAK       K +P++T  R   I+PEM+G  I V+NGK
Sbjct: 1   MRRSLKKGPFVDK-HLLKKVRKAKES----GKKKPIKTWSRRSTILPEMVGLTIAVHNGK 55

Query: 111 TFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHS 148
            F  VEI  EM+GH L EF+ +   V HG  GI AT S
Sbjct: 56  KFVPVEITEEMVGHKLGEFAPTRTFVGHGADGIKATRS 93

Length = 93

>gnl|CDD|178985 PRK00357, rpsS, 30S ribosomal protein S19; Reviewed

 Score = 60.6 bits (148), Expect = 6e-13
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+ P     L+KK+ KA      G+K + ++T  R   I+PE +G  I V+NG+   
Sbjct: 3   RSLKKGPFVDGHLLKKVEKANES---GDK-KVIKTWSRRSTILPEFVGLTIAVHNGRKHV 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            V +   M+GH L EF+
Sbjct: 59  PVYVTENMVGHKLGEFA 75

Length = 92

>gnl|CDD|130122 TIGR01050, rpsS_bact, ribosomal protein S19, bacterial/organelle

 Score = 58.5 bits (142), Expect = 3e-12
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+ P     L+KK+ K         K + ++T  R   I+PEMIG  I V+NGK F 
Sbjct: 3   RSLKKGPFVDHHLLKKVEKLNE----SGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFI 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            V I  +M+GH L EF+
Sbjct: 59  PVYITEDMVGHKLGEFA 75

The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 92

>gnl|CDD|176991 CHL00050, rps19, ribosomal protein S19

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+ P     L+KK+ K   +    E+ E + T  R   I+P MIG  I V+NGK   
Sbjct: 3   RSLKKNPFVANHLLKKIEKLNTK----EEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHI 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            + I  +M+GH L EF+
Sbjct: 59  PIYITDQMVGHKLGEFA 75

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
KOG0898	152	consensus 40S ribosomal protein S15 [Translation,	100.0
PTZ00096	143	40S ribosomal protein S15; Provisional	100.0
TIGR01025	135	rpsS_arch ribosomal protein S19(archaeal)/S15(euka	100.0
PRK04038	134	rps19p 30S ribosomal protein S19P; Provisional	100.0
COG0185	93	RpsS Ribosomal protein S19 [Translation, ribosomal	100.0
CHL00050	92	rps19 ribosomal protein S19	100.0
TIGR01050	92	rpsS_bact ribosomal protein S19, bacterial/organel	100.0
PRK00357	92	rpsS 30S ribosomal protein S19; Reviewed	100.0
PF00203	81	Ribosomal_S19: Ribosomal protein S19; InterPro: IP	100.0
PLN03147	92	ribosomal protein S19; Provisional	99.97
KOG0899	93	consensus Mitochondrial/chloroplast ribosomal prot	99.97

>KOG0898 consensus 40S ribosomal protein S15 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.1e-75  Score=452.27  Aligned_cols=141  Identities=82%  Similarity=1.299  Sum_probs=139.6

Q ss_pred             cCCccccceeeeeecCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCce
Q 031653           15 GLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMI   94 (155)
Q Consensus        15 ~~~KKrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt~~R~~~   94 (155)
                      .++|||||++|||||+|||||+|||.|||++|+|||+||+++|||+++|+.|+++||+|++++++++||++|+||+||||
T Consensus        12 ~~kKKRTFrkftyrGVdld~Lldms~~~~~~l~~ar~rrR~~RGL~~k~~~liKklrkAkk~A~~~ekpe~VkTHlR~mI   91 (152)
T KOG0898|consen   12 VLKKKRTFRKFTYRGVDLDQLLDMSTEQLVKLFPARQRRRLNRGLTRKPHSLIKKLRKAKKEAPPMEKPEVVKTHLRNMI   91 (152)
T ss_pred             HHhhhhhhhhccccCCCHHHHhcCCHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHhhcCcccCcHHHHHHhhcce
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCCCcccCC
Q 031653           95 IVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus        95 IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS~fvplK  155 (155)
                      |+|||||+.|||||||+|++|||+|||||||||||||||||++||+|||||||||+|+|||
T Consensus        92 I~PEMvGs~VGVyNGK~FnqvEiKPEMIGhYL~eFsiTykpvkHgrpgigat~SsrfipLk  152 (152)
T KOG0898|consen   92 IVPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK  152 (152)
T ss_pred             eeHhhhcceEEEecCcccceeeccHHHHhhhhhhccccccccccCCCCCCcccccccccCC
Confidence            9999999999999999999999999999999999999999999999999999999999997

>PTZ00096 40S ribosomal protein S15; Provisional

Probab=100.00  E-value=4.6e-71  Score=432.29  Aligned_cols=140  Identities=71%  Similarity=1.212  Sum_probs=137.3

Q ss_pred             hcCCccccceeeeeecCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCc
Q 031653           14 AGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNM   93 (155)
Q Consensus        14 ~~~~KKrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt~~R~~   93 (155)
                      ++++|+|+|++|+|||+|||||++||+|||++|+||||||+++|||.+++.+||++|++++++++++++|++|+||+|+|
T Consensus         4 ~~~~k~r~~k~f~yRG~~l~~L~~m~~~e~~~L~~aR~RR~~~RGl~~~~~~LlkKirk~~~~~~~~~k~~~ikT~~R~~   83 (143)
T PTZ00096          4 EQLKKKRTFKKFTYRGVELEKLLALPEEELVELFRARQRRRINRGIKRKHPTLLKKLRKAKKATKPGEKPKAVKTHLRDM   83 (143)
T ss_pred             cccccccccceeeeecCCHHHHHcCCHHHHHHHcCcccccccccCCCHHHHHHHHHHHHHhhhcccccCCcceeEecccC
Confidence            47789999999999999999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             eecccccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCCCccc
Q 031653           94 IIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIP  153 (155)
Q Consensus        94 ~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS~fvp  153 (155)
                      +|||+|||++|+|||||+|++|+|+||||||||||||+||+++.||+|||||||||+|||
T Consensus        84 ~IlP~mVG~ti~VyNGK~fv~V~I~~eMIGhkLGEFa~Trk~~~Hg~pGigATrSS~fvp  143 (143)
T PTZ00096         84 IIVPEMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEFSITYKPVRHGKPGVGATHSSRFIP  143 (143)
T ss_pred             eeCccccCcEEEEEcCCeeEeeEeccCeeceeeccccCCcccccCCCCCcCcccccccCC
Confidence            999999999999999999999999999999999999999999999999999999999998

>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic)

Probab=100.00  E-value=8.8e-67  Score=405.12  Aligned_cols=135  Identities=70%  Similarity=1.122  Sum_probs=130.7

Q ss_pred             cceeeeeecCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceeccccc
Q 031653           21 TFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMI  100 (155)
Q Consensus        21 tf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mv  100 (155)
                      +|++|+|||++||+|++||++||++|+||||||++.||+...+.+||++++++++....+++|++|+||+|+|+|+|+||
T Consensus         1 ~~~~f~yrG~~l~~L~~m~~~e~~~l~~ar~RRs~~RG~~~~~~~Llkki~k~~~~~~~g~k~~~IKT~sR~s~IlP~~V   80 (135)
T TIGR01025         1 TFKEFRYRGYTLEELQDMSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLRKAKKEAPKGEKPEVIRTHCRDMIILPEMV   80 (135)
T ss_pred             CCceEeecccCHHHHHcCCHHHHHHHcCcccCcccccCCchhhHHHHHHHHHHHhccccccCCcceEEeccCCeeChhhc
Confidence            68999999999999999999999999999999999999999999999999998876666778899999999999999999


Q ss_pred             ccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCCCcccCC
Q 031653          101 GSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus       101 G~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS~fvplK  155 (155)
                      |++|+|||||+|++|+|+||||||||||||+||+++.||+||||||+||+|||||
T Consensus        81 G~ti~VyNGk~fv~v~I~~eMVGhklGEFa~Trk~~~Hg~pGigAt~ss~fvplK  135 (135)
T TIGR01025        81 GSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITRKPVKHGRPGIGATRSSMFVPLK  135 (135)
T ss_pred             CcEEEEEcCCeeEEEEecCCeeceeecccccCcccCcCCCCCcCccccccceeCc
Confidence            9999999999999999999999999999999999999999999999999999997

This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.

>PRK04038 rps19p 30S ribosomal protein S19P; Provisional

Probab=100.00  E-value=8.5e-66  Score=399.18  Aligned_cols=133  Identities=54%  Similarity=0.955  Sum_probs=127.4

Q ss_pred             ccceeeeeecCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceecccc
Q 031653           20 RTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEM   99 (155)
Q Consensus        20 rtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~m   99 (155)
                      ++|++|+|||+|||||++||+|||++|+||||||++.||+...+.+||++++++++.   +++|++|+||+|+|+|+|+|
T Consensus         2 ~~~~~f~yrG~~l~~L~~m~~~~~~~l~~ar~RRsl~KGp~~~~~~LlkKi~k~~~~---~~k~~~ikT~sR~s~IlP~~   78 (134)
T PRK04038          2 KRWKEFTYRGYTLEELQEMSLEEFAELLPARQRRSLKRGLTPEQRKLLEKIRKARRE---KKKGRVIRTHVRDMIILPEM   78 (134)
T ss_pred             CccceeeecccCHHHHHcCCHHHHHHHcchhhhhhhccCCCcchHHHHHHHHHHHhc---ccCCcceeEeccCCeeChhh
Confidence            689999999999999999999999999999999999999998899999999998753   34567899999999999999


Q ss_pred             cccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCCCcccCC
Q 031653          100 IGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus       100 vG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS~fvplK  155 (155)
                      ||++|+|||||+|++|+|+||||||||||||+||+++.||+|||||||||+|||||
T Consensus        79 VG~ti~VyNGk~fv~v~I~~eMVGhklGEFa~Trk~~~Hg~pGigAT~sS~fvplK  134 (134)
T PRK04038         79 VGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTRKRVQHGSPGIGATRSSKFVPLK  134 (134)
T ss_pred             cCeEEEEecCceeEeEEeccCccceeeccccCCcccCcCCCCCcCccccccceeCc
Confidence            99999999999999999999999999999999999999999999999999999997

>COG0185 RpsS Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-42  Score=254.49  Aligned_cols=92  Identities=48%  Similarity=0.703  Sum_probs=81.4

Q ss_pred             HhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031653           52 RRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        52 RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      ||++.||.. .+.+||+++++++..   +++ ++||||||+|+|||+|||++|+|||||+|++|+|+|||||||||||||
T Consensus         2 ~RSlkkGp~-~~~~Ll~Kv~~~~~~---~~k-~~IkT~sR~stIlPemVG~ti~VhNGk~~vpV~I~~eMVGHkLGEFap   76 (93)
T COG0185           2 RRSLKKGPF-VDKHLLKKVRKAKES---GKK-KPIKTWSRRSTILPEMVGLTIAVHNGKKFVPVEITEEMVGHKLGEFAP   76 (93)
T ss_pred             CcccccCcc-ccHHHHHHHHHHHhc---cCC-CcceeeecccEechhhcCcEEEEEcCceEEEEEechhhcceecccccc
Confidence            455555554 445999999998863   233 689999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCCCCCCCCCC
Q 031653          132 SYKPVKHGRPGIGATHS  148 (155)
Q Consensus       132 Trk~~~H~~pGigAT~s  148 (155)
                      ||+++.|+.||+|||+|
T Consensus        77 TR~~~~H~~~~~~atr~   93 (93)
T COG0185          77 TRTFVGHGADGIKATRS   93 (93)
T ss_pred             eecccccCCCCcCcccC
Confidence            99999999999999986

>CHL00050 rps19 ribosomal protein S19

Probab=100.00  E-value=9e-36  Score=218.75  Aligned_cols=81  Identities=37%  Similarity=0.552  Sum_probs=74.3

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031653           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |.||+|++|+   +||++++++..    .+++++|+||+|+|+|||+|||++|+|||||+|++|+|+||||||||||||+
T Consensus         1 M~RS~wKgpfv~~~Ll~ki~~~~~----~~~~~~ikT~sR~s~IlP~~vg~t~~VyNGk~fv~v~I~~eMVGhklGEFa~   76 (92)
T CHL00050          1 MTRSLKKNPFVANHLLKKIEKLNT----KEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAP   76 (92)
T ss_pred             CCCccccCcccCHHHHHHHHHhhh----ccCCccceEEccccEeChhhcCcEEEEEcCceEEEEEEccccccceeeeEee
Confidence            7899999997   89999987653    2345689999999999999999999999999999999999999999999999


Q ss_pred             eeecccCC
Q 031653          132 SYKPVKHG  139 (155)
Q Consensus       132 Trk~~~H~  139 (155)
                      ||+++.|+
T Consensus        77 TRk~~~h~   84 (92)
T CHL00050         77 TRNFRGHA   84 (92)
T ss_pred             eecccccc
Confidence            99999995

>TIGR01050 rpsS_bact ribosomal protein S19, bacterial/organelle

Probab=100.00  E-value=4.8e-35  Score=214.96  Aligned_cols=82  Identities=39%  Similarity=0.608  Sum_probs=75.0

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031653           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |+||+|++|+   +|++++++++.    .+++++|+||+|+|+|||+|||++|+||||++|++|+|++||||||||||++
T Consensus         1 MsRS~wKgpfv~~~Ll~ki~k~~~----~~~~~~ikT~sR~s~IlP~~vg~~i~VynGk~fv~v~I~~~MvGhklGEFa~   76 (92)
T TIGR01050         1 MSRSLKKGPFVDHHLLKKVEKLNE----SGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAP   76 (92)
T ss_pred             CCcccccCccccHHHHHHHHHhhc----ccCCCceEEEecccEEChHHCCcEEEEEcCceEEEEEeCcCeecceeeeeec
Confidence            6899999996   89999988752    2345689999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCC
Q 031653          132 SYKPVKHGR  140 (155)
Q Consensus       132 Trk~~~H~~  140 (155)
                      ||+++.|++
T Consensus        77 TRk~~~h~~   85 (92)
T TIGR01050        77 TRTFKGHAK   85 (92)
T ss_pred             eeecccccc
Confidence            999999975

the Archaea may be designated S15 or S19.

>PRK00357 rpsS 30S ribosomal protein S19; Reviewed

Probab=100.00  E-value=5.8e-35  Score=214.57  Aligned_cols=82  Identities=33%  Similarity=0.528  Sum_probs=74.4

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031653           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |+||+|++|+   +||+++++++..    .++++|+||+|+|+|+|+|||++|+||||++|++|+|+|||||||||||++
T Consensus         1 M~RS~~Kgp~v~~~Ll~ki~k~~~~----~~~~~ikT~sR~s~IlP~~vg~~i~VyNGk~fv~v~I~~emiGhklGEFa~   76 (92)
T PRK00357          1 MARSLKKGPFVDGHLLKKVEKANES----GDKKVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAP   76 (92)
T ss_pred             CCcccccCccccHHHHHHHHHHhhc----cCCCceEEeeccCCcCHHHCCceEEEEcCCeeEeEEeccCccceeeeeecc
Confidence            6899999996   899999987531    235679999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCC
Q 031653          132 SYKPVKHGR  140 (155)
Q Consensus       132 Trk~~~H~~  140 (155)
                      ||++++|+.
T Consensus        77 Tr~~~~H~~   85 (92)
T PRK00357         77 TRTFRGHAA   85 (92)
T ss_pred             eeccccccc
Confidence            999999973

>PF00203 Ribosomal_S19: Ribosomal protein S19; InterPro: IPR002222 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=7.2e-35  Score=209.03  Aligned_cols=81  Identities=51%  Similarity=0.838  Sum_probs=73.8

Q ss_pred             cCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeeeeeecc
Q 031653           57 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV  136 (155)
Q Consensus        57 Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~  136 (155)
                      ||+|++|+.+...++++++..+..++ ++|+||+|+|+|+|+|||++|+|||||+|++|+|+|||||||||||++||+++
T Consensus         1 Rs~~K~~~~~~~~l~k~~~~~~~~~k-~~ikt~~R~s~IlP~~vg~~i~VyNGk~f~~i~I~~~miG~klGEF~~Trk~~   79 (81)
T PF00203_consen    1 RSLWKGPFVLKKLLKKIKKLNPSKKK-KVIKTHSRSSTILPEMVGKTIGVYNGKKFVPIKITPEMIGHKLGEFAPTRKPV   79 (81)
T ss_dssp             CCSSSSTHHHHHHHHHHHHHHCTTST-SEEEESSTTSBBSGTGTTSEEEEESSSSEEEEECSSTGTSSBCGCGSSSSSTS
T ss_pred             CCCCcccchhHHHHHHHHHHhhcCCC-cceEEEeCCCCcccceeceEEEEecCceEEEEEecccccceEeeceeeecccC
Confidence            89999999887777777655544554 78999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 031653          137 KH  138 (155)
Q Consensus       137 ~H  138 (155)
                      +|
T Consensus        80 ~H   81 (81)
T PF00203_consen   80 KH   81 (81)
T ss_dssp             CT
T ss_pred             CC
Confidence            98

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The small subunit ribosomal proteins can be categorised as: primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S19 contains 88-144 amino acid residues. In Escherichia coli, S19 is known to form a complex with S13 that binds strongly to 16S ribosomal RNA. Experimental evidence [] has revealed that S19 is moderately exposed on the ribosomal surface, and is designated a secondary rRNA binding protein. S19 belongs to a family of ribosomal proteins [, ] that includes: eubacterial S19; algal and plant chloroplast S19; cyanelle S19; archaebacterial S19; plant mitochondrial S19; and eukaryotic S15 ('rig' protein).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2XZM_S 2XZN_S 2ZKQ_s 3U5C_P 3O30_I 3U5G_P 3O2Z_I 3IZB_R 1S1H_S 1XMO_S ....

>PLN03147 ribosomal protein S19; Provisional

Probab=99.97  E-value=2.5e-32  Score=200.61  Aligned_cols=78  Identities=21%  Similarity=0.347  Sum_probs=69.0

Q ss_pred             cCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeeeee
Q 031653           57 RGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISY  133 (155)
Q Consensus        57 Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Tr  133 (155)
                      ||+|++|+   +|+ ++.+++..      ..+|+||||+|+|||+|||++|+|||||+|++|+|+|||||||||||++||
T Consensus         1 RS~wKGPfv~~~L~-k~~~~~~~------~~~iktwSR~S~IlP~~vg~ti~VyNGk~fv~v~It~~MVGhKlGEFa~Tr   73 (92)
T PLN03147          1 QAIWKGAFVDAFLA-RIKKKRDL------LLGKKIWSHRSSILPDFVDCSVLIYNGKTHIRCKITEGKVGHKFGEFAFTR   73 (92)
T ss_pred             CCCccCccccHHHH-HHHHHHhc------CCceeEEcccceECHHHcCCEEEEeCCCceEEEEecCCccceeeeccccEe
Confidence            89999997   664 57665431      147999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCCC
Q 031653          134 KPVKHGRP  141 (155)
Q Consensus       134 k~~~H~~p  141 (155)
                      +++.|...
T Consensus        74 k~~~hk~~   81 (92)
T PLN03147         74 KRRPHRAI   81 (92)
T ss_pred             cccCCCCc
Confidence            99999754

>KOG0899 consensus Mitochondrial/chloroplast ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=2.2e-31  Score=193.76  Aligned_cols=80  Identities=33%  Similarity=0.575  Sum_probs=70.7

Q ss_pred             hhhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeee
Q 031653           54 RFQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFS  130 (155)
Q Consensus        54 ~~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa  130 (155)
                      +|.||+|++|+   .|+++..+.+.       ..+|+||+|+++|||+|||++|.|||||+|++|+|+++|||||||||+
T Consensus         9 Sm~RSvwK~P~V~~~~~rk~~~~~~-------~~pikt~sRasTIlP~~Vg~~~~IhNGk~~v~vkIte~mVGHKlGEFa   81 (93)
T KOG0899|consen    9 SMTRSVWKGPFVVKFLLRKIEKLKG-------KAPIKTWSRASTILPTMVGHTFAIHNGKEHVPVKITEDMVGHKLGEFA   81 (93)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHhcC-------CCceeehhhhcchhhhhhCceEEEecCcceeeEEeecchhcccccccc
Confidence            39999999997   55665555432       235999999999999999999999999999999999999999999999


Q ss_pred             eeeecccCCC
Q 031653          131 ISYKPVKHGR  140 (155)
Q Consensus       131 ~Trk~~~H~~  140 (155)
                      +|||...|.+
T Consensus        82 pTrk~~~~ak   91 (93)
T KOG0899|consen   82 PTRKFFGHAK   91 (93)
T ss_pred             chhhhhcccc
Confidence            9999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
3iz6_R	154	Localization Of The Small Subunit Ribosomal Protein		2e-72
2zkq_s	145	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-56
3izb_R	142	Localization Of The Small Subunit Ribosomal Protein		4e-50
3zey_I	152	High-resolution Cryo-electron Microscopy Structure		2e-47
3j20_T	132	Promiscuous Behavior Of Proteins In Archaeal Riboso		1e-33
2xzm_S	144	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-32
3j0l_S	125	Core Of Mammalian 80s Pre-Ribosome In Complex With		8e-32
1s1h_S	80	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		3e-30
3jyv_S	71	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-25
3fih_S	79	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		6e-08
2gy9_S	87	Structure Of The 30s Subunit Of A Pre-Translocation		6e-08
1p6g_S	91	Real Space Refined Coordinates Of The 30s Subunit F		7e-08
1vs5_S	92	Crystal Structure Of The Bacterial Ribosome From Es		7e-08
1qkf_A	92	Solution Structure Of The Ribosomal Protein S19 Fro		2e-06
1fka_S	93	Structure Of Functionally Activated Small Ribosomal		3e-06
1pns_S	80	Crystal Structure Of A Streptomycin Dependent Ribos		5e-06
3mr8_S	78	Recognition Of The Amber Stop Codon By Release Fact		6e-06
3fic_S	79	T. Thermophilus 70s Ribosome In Complex With Mrna,		7e-06
3bbn_S	92	Homology Model For The Spinach Chloroplast 30s Subu		7e-06

>pdb|3IZ6|R Chain R, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 154

Iteration: 1
 Score =  267 bits (682), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 128/139 (92%), Positives = 136/139 (97%)
Query: 17  PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 76
           PKKRTF+K+S+RGVDLDALLDMS D+LV+LF ARARRRFQRGLKRKPMALIKKLRKAK++
Sbjct: 16  PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKD 75
Query: 77  APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 136
           AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV
Sbjct: 76  APAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 135
Query: 137 KHGRPGIGATHSSRFIPLK 155
           KHGRPGIGATHSSRFIPLK
Sbjct: 136 KHGRPGIGATHSSRFIPLK 154

>pdb|2ZKQ|SS Chain s, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 145

Iteration: 1
 Score =  213 bits (541), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 128/138 (92%)
Query: 18  KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
           KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EA
Sbjct: 8   KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEA 67
Query: 78  PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
           PP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVK
Sbjct: 68  PPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVK 127
Query: 138 HGRPGIGATHSSRFIPLK 155
           HGRPGIGATHSSRFIPLK
Sbjct: 128 HGRPGIGATHSSRFIPLK 145

>pdb|3IZB|R Chain R, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 142

Iteration: 1
 Score =  193 bits (490), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/138 (66%), Positives = 108/138 (78%), Gaps = 3/138 (2%)
Query: 18  KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
           KKR FK  S+RGVDL+ LL+MS ++ VKL  AR RRRF RG+  KP   +KKLR AK  A
Sbjct: 8   KKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAA 67
Query: 78  PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
           P  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GHYL EFSI+Y PV+
Sbjct: 68  PENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVR 127
Query: 138 HGRPGIGATHSSRFIPLK 155
           HGR G     +SRFIPLK
Sbjct: 128 HGRAG---ATTSRFIPLK 142

>pdb|3ZEY|I Chain I, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 152

Iteration: 1
 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 109/140 (77%)
Query: 16  LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKR 75
           L K+RTF KF++RG ++D LL ++ +E   L  ARARRR  R   R+   L+K+LR+AK+
Sbjct: 13  LKKERTFHKFTYRGHEIDPLLALTEEEFKALVHARARRRMNRHADRRAPVLLKRLREAKK 72
Query: 76  EAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 135
               GEKP+ V+THLR+++I PEM+GS++G+YNG+ FN VEIK EMIGHYL EFS++YKP
Sbjct: 73  NVKAGEKPKAVKTHLRDVVITPEMVGSVVGIYNGRQFNAVEIKGEMIGHYLGEFSLTYKP 132
Query: 136 VKHGRPGIGATHSSRFIPLK 155
           V HGRPG GATHSSRFIPLK
Sbjct: 133 VAHGRPGFGATHSSRFIPLK 152

>pdb|3J20|T Chain T, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 132

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 96/133 (72%), Gaps = 4/133 (3%)
Query: 23  KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEK 82
           K+F +RG  L+ L++MS +EL +LF AR RR  +RGL  +   L++K+R AK+    G+ 
Sbjct: 4   KEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKY 59
Query: 83  PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 142
            +P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PG
Sbjct: 60  KKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPG 119
Query: 143 IGATHSSRFIPLK 155
           +GAT SS F+ +K
Sbjct: 120 VGATRSSMFVAVK 132

>pdb|2XZM|S Chain S, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 144

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/129 (50%), Positives = 89/129 (68%), Gaps = 9/129 (6%)
Query: 19  KRTFKKFSFRG---VDLDALLDMSN------DELVKLFSARARRRFQRGLKRKPMALIKK 69
           K++ KKF+FRG    +L AL   SN      DEL  LF A+ RRR +RG+  K    + K
Sbjct: 5   KKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNK 64
Query: 70  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 129
           +R++K + P GEKP PV+TH R+MI++PE++G I+GVYNGK F  VE+K +MIG YLAEF
Sbjct: 65  VRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEF 124
Query: 130 SISYKPVKH 138
           +++YKP  H
Sbjct: 125 AMTYKPTTH 133

>pdb|3J0L|S Chain S, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 125

Iteration: 1
 Score =  132 bits (332), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 25  FSFRGVDLDALLDMSN---------DELVKLFSARARRRFQRGLKRKPMALIKKLRKAKR 75
           F+FRG  L+ L  +++         DEL  LF A+ RRR +RG+  K    + K+R++K 
Sbjct: 1   FTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKE 60
Query: 76  EAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 135
           + P GEKP PV+TH R+MI++PE++G I+GVYNGK F  VE+K +MIG YLAEF+++YKP
Sbjct: 61  KCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKP 120
Query: 136 VKHGR 140
             HG+
Sbjct: 121 TTHGK 125

>pdb|1S1H|S Chain S, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 80

Iteration: 1
 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 66/80 (82%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVE
Sbjct: 1   RGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVE 60
Query: 117 IKPEMIGHYLAEFSISYKPV 136
           I+PEM+GHYL EFSI+Y PV
Sbjct: 61  IRPEMLGHYLGEFSITYTPV 80

>pdb|3JYV|S Chain S, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 71

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 58/71 (81%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVE
Sbjct: 1   RGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVE 60
Query: 117 IKPEMIGHYLA 127
           I+PEM+GHYL 
Sbjct: 61  IRPEMLGHYLG 71

>pdb|3FIH|S Chain S, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 79

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 1   RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 59
Query: 117 IKPEMIGHYLAEFS 130
           +  EM+GH L EF+
Sbjct: 60  VTDEMVGHKLGEFA 73

>pdb|2GY9|S Chain S, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 87

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 2   RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 60
Query: 117 IKPEMIGHYLAEFS 130
           +  EM+GH L EF+
Sbjct: 61  VTDEMVGHKLGEFA 74

>pdb|1P6G|S Chain S, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 91

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 2   RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 60
Query: 117 IKPEMIGHYLAEFS 130
           +  EM+GH L EF+
Sbjct: 61  VTDEMVGHKLGEFA 74

>pdb|1VS5|S Chain S, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 92

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 3   RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 61
Query: 117 IKPEMIGHYLAEFS 130
           +  EM+GH L EF+
Sbjct: 62  VTDEMVGHKLGEFA 75

>pdb|1QKF|A Chain A, Solution Structure Of The Ribosomal Protein S19 From Thermus Thermophilus Length = 92

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 86  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR 140
           ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+ +     HG+
Sbjct: 30  IKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGK 84

>pdb|1FKA|S Chain S, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 93

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 86  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR 140
           ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+ +     HG+
Sbjct: 31  IKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGK 85

>pdb|1PNS|S Chain S, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 80

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 86  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFS 130
           ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+
Sbjct: 30  IKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFA 74

>pdb|3MR8|S Chain S, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3ms1. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s). Length = 78

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 86  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFS 130
           ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+
Sbjct: 28  IKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFA 72

>pdb|3FIC|S Chain S, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 79

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 86  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFS 130
           ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+
Sbjct: 28  IKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFA 72

>pdb|3BBN|S Chain S, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 55  FQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQ 114
             R LK+ P      LRK ++     EK E + T  R   I+P MIG  I ++NG+    
Sbjct: 1   MTRSLKKNPFVANHLLRKIEKLNKKAEK-EIIVTWSRASTIIPTMIGHTIAIHNGREHLP 59
Query: 115 VEIKPEMIGHYLAEFS 130
           + I   M+GH L EF+
Sbjct: 60  IYITDRMVGHKLGEFA 75
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
3iz6_R	154	40S ribosomal protein S15 (S19P); eukaryotic ribos	2e-83
3u5c_P	142	40S ribosomal protein S15; translation, ribosome,	6e-76
2xzm_S	144	RPS15E; ribosome, translation; 3.93A {Tetrahymena	4e-67
3r8n_S	79	30S ribosomal protein S19; protein biosynthesis, R	1e-12
3i1m_S	92	30S ribosomal protein S19; ribosome structure, pro	4e-12
3bbn_S	92	Ribosomal protein S19; small ribosomal subunit, sp	5e-12
3a1p_B	93	30S ribosomal protein S19; RIMM N-terminal domain,	1e-11

>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s 1s1h_S 3jyv_S* Length = 154

 Score =  241 bits (616), Expect = 2e-83
 Identities = 135/155 (87%), Positives = 145/155 (93%), Gaps = 1/155 (0%)

Query: 1   MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK 60
           MAD + +  VAA A  PKKRTF+K+S+RGVDLDALLDMS D+LV+LF ARARRRFQRGLK
Sbjct: 1   MADVEVETEVAAGA-QPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLK 59

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPE
Sbjct: 60  RKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPE 119

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 120 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S* Length = 142

 Score =  221 bits (566), Expect = 6e-76
 Identities = 93/144 (64%), Positives = 110/144 (76%), Gaps = 3/144 (2%)

Query: 12  AAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLR 71
           + A   KKR FK  S+RGVDL+ LL+MS ++ VKL  AR RRRF RG+  KP   +KKLR
Sbjct: 2   SQAVNAKKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLR 61

Query: 72  KAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 131
            AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GHYL EFSI
Sbjct: 62  AAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSI 121

Query: 132 SYKPVKHGRPGIGATHSSRFIPLK 155
           +Y PV+HGR G     +SRFIPLK
Sbjct: 122 TYTPVRHGRAG---ATTSRFIPLK 142

>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S Length = 144

 Score =  199 bits (508), Expect = 4e-67
 Identities = 64/139 (46%), Positives = 92/139 (66%), Gaps = 9/139 (6%)

Query: 17  PKKRTFKKFSFRGVDLDALLDMS---------NDELVKLFSARARRRFQRGLKRKPMALI 67
             K++ KKF+FRG  L+ L  ++         +DEL  LF A+ RRR +RG+  K    +
Sbjct: 3   DNKKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFV 62

Query: 68  KKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA 127
            K+R++K + P GEKP PV+TH R+MI++PE++G I+GVYNGK F  VE+K +MIG YLA
Sbjct: 63  NKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLA 122

Query: 128 EFSISYKPVKHGRPGIGAT 146
           EF+++YKP  HG+ G    
Sbjct: 123 EFAMTYKPTTHGKTGAAGG 141

>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 2qal_S* 1p6g_S 1p87_S 2aw7_S ... Length = 92

 Score = 57.5 bits (140), Expect = 4e-12
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+ P     L+KK+ KA      G+K +P+RT  R   I P MIG  I V+NG+   
Sbjct: 3   RSLKKGPFIDLHLLKKVEKAVES---GDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHV 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            V +  EM+GH L EF+
Sbjct: 59  PVFVTDEMVGHKLGEFA 75

>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 92

 Score = 57.5 bits (140), Expect = 5e-12
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+ P     L++K+ K  ++    EK E + T  R   I+P MIG  I ++NG+   
Sbjct: 3   RSLKKNPFVANHLLRKIEKLNKK---AEK-EIIVTWSRASTIIPTMIGHTIAIHNGREHL 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            + I   M+GH L EF+
Sbjct: 59  PIYITDRMVGHKLGEFA 75

>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ... Length = 93

 Score = 56.8 bits (138), Expect = 1e-11
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+       L++K+ +   +   GEK   ++T  R   IVPEM+G  I VYNGK   
Sbjct: 3   RSLKKGVFVDDHLLEKVLELNAK---GEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHV 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            V I   M+GH L EF+
Sbjct: 59  PVYITENMVGHKLGEFA 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
3iz6_R	154	40S ribosomal protein S15 (S19P); eukaryotic ribos	100.0
3u5c_P	142	40S ribosomal protein S15; translation, ribosome,	100.0
3j20_T	132	30S ribosomal protein S19P; archaea, archaeal, KIN	100.0
2xzm_S	144	RPS15E; ribosome, translation; 3.93A {Tetrahymena	100.0
3bbn_S	92	Ribosomal protein S19; small ribosomal subunit, sp	100.0
3a1p_B	93	30S ribosomal protein S19; RIMM N-terminal domain,	100.0
3i1m_S	92	30S ribosomal protein S19; ribosome structure, pro	100.0
3r8n_S	79	30S ribosomal protein S19; protein biosynthesis, R	100.0

>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s

Probab=100.00  E-value=1.3e-76  Score=466.96  Aligned_cols=154  Identities=87%  Similarity=1.339  Sum_probs=89.4

Q ss_pred             CCCCcccHHHHHHhcCCccccceeeeeecCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCC
Q 031653            1 MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPG   80 (155)
Q Consensus         1 ~~~~~~~~~~~~~~~~~KKrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~   80 (155)
                      |||.+++.+.+| |+++|||||++|||||+|||||++||+|||++|+||||||+++|||+++|..||++||+++++++++
T Consensus         1 ~~~~~~~~~~~~-~~~~kkrtf~kFtYrG~~ld~Ll~ms~eel~~L~~aR~RR~l~RGl~~k~~~Llkklrkak~~~~~~   79 (154)
T 3iz6_R            1 MADVEVETEVAA-GAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAG   79 (154)
T ss_dssp             ----------------------------------------------------------CCCCSCCCCSSCCSCCCSHHHH
T ss_pred             CCcccchhHHHH-HhhhcccceeeEEEecCcHHHHHhCCHHHHHHHccHHHhhhhhcCCCHHHHHHHHHHHHhhhccCcc
Confidence            788888744334 4788999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             CCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCCCcccCC
Q 031653           81 EKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus        81 ~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS~fvplK  155 (155)
                      ++|++|+||+|+|+|+|+|||++|+|||||+|++|+|+|||||||||||++||+++.||+|||||||||+|||||
T Consensus        80 ~k~~~IkT~sR~s~IlPemVG~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~HgkpGiGAT~SS~FiPlK  154 (154)
T 3iz6_R           80 EKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  154 (154)
T ss_dssp             HTHHHHHTCSCSCCCCCCCCCCCCGGGTTCCCEEESSSSEEECCCCSSCCSSCGGGTTSSHHHHHTTCC------
T ss_pred             cCCceeeecccCCEECHHHCCcEEEEEcCcceeeEEeccCccceeeeeeeeeeccCcCCCCCCCcccccccccCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999997

>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*

Probab=100.00  E-value=2e-70  Score=427.21  Aligned_cols=138  Identities=67%  Similarity=1.126  Sum_probs=123.1

Q ss_pred             cCCccccceeeeeecCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCce
Q 031653           15 GLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMI   94 (155)
Q Consensus        15 ~~~KKrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt~~R~~~   94 (155)
                      +++|||||++|||||+|||||++||+|||++|+||||||+++|||+++|..||++||+|+++++++++|++|+||+|+|+
T Consensus         5 ~~~kkrtf~kFtyrG~~ld~Ll~ms~e~l~~L~~aR~RR~l~RGl~~k~~~Ll~klrkak~~~~~~~k~~~ikT~sR~s~   84 (142)
T 3u5c_P            5 VNAKKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMI   84 (142)
T ss_dssp             ---CCCCCCCCBSSSCBHHHHHTTCHHHHHHHSCHHHHHHHHSCCSSCSHHHHHHHHHHHHHSCSSSCCCCEEECCTTCB
T ss_pred             ccccccceeeEEEccccHHHHHcCCHHHHHHHhhHHHhhhhccCCCHHHHHHHHHHHHHhhhcCcccCCcceEeeccCCE
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCCCcccCC
Q 031653           95 IVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus        95 IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS~fvplK  155 (155)
                      |+|+|||++|+|||||+|++|+|+||||||||||||+||+++.||+|||   |||+|||||
T Consensus        85 IlP~mVG~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~Hg~~gi---~SS~fiplK  142 (142)
T 3u5c_P           85 IVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAGA---TTSRFIPLK  142 (142)
T ss_dssp             CCGGGTTCEEEEESSSSEEEEECCGGGTTSBGGGGSCCSCCCCCSCC--------------
T ss_pred             eChhHCCCEEEEEcCCeeEEEecccCccceeeeeeeeEecccccCCCCc---cccccccCC
Confidence            9999999999999999999999999999999999999999999999999   999999997

>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.8e-66  Score=400.96  Aligned_cols=130  Identities=53%  Similarity=0.879  Sum_probs=107.6

Q ss_pred             ceeeeeecCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceecccccc
Q 031653           22 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIG  101 (155)
Q Consensus        22 f~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG  101 (155)
                      -++|||||+|||||++||+|||++|+||||||++.||++..+.+||++++++++++    +|++|+||+|+|+|+|+|||
T Consensus         3 ~~kftyrG~~ld~L~~ms~~~l~~L~~ar~rRslkkG~~~~~~~LlkKi~k~~~~~----~~~~ikT~sR~s~IlP~mVG   78 (132)
T 3j20_T            3 RKEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGK----YKKPIRTHCRDMIILPEMVG   78 (132)
T ss_dssp             ---CCSSSSCHHHHHHHHHHHHHHHSCHHHHHHHHHCCCHHHHHHHHHHHHHSSSS----CCCCEEECCCSCBCCGGGTT
T ss_pred             ccEEEEcCCcHHHHHcCCHHHHHHHhhHHHHHHhhcCCchhhHHHHHHHHHHHhcc----CCcceEecccCCEeChHHCC
Confidence            36899999999999999999999999999999999999988999999999998643    57899999999999999999


Q ss_pred             cEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCCCcccCC
Q 031653          102 SIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus       102 ~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS~fvplK  155 (155)
                      ++|+|||||+|++|+|+||||||||||||+||+++.||+|||||||||+|||||
T Consensus        79 ~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~H~~pGigAT~sS~fiplK  132 (132)
T 3j20_T           79 LTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK  132 (132)
T ss_dssp             CEEEEECSSSEEEEECCGGGTTSBGGGTSCSSCCCCCC----------------
T ss_pred             cEEEEECCCeeeeeecccCccceeeeeeeeEeccCcCCCCCcCcccccccccCC
Confidence            999999999999999999999999999999999999999999999999999997

>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S

Probab=100.00  E-value=1.8e-64  Score=394.53  Aligned_cols=132  Identities=48%  Similarity=0.936  Sum_probs=113.9

Q ss_pred             ccccceeeeeecCChhHHhc---------CCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEe
Q 031653           18 KKRTFKKFSFRGVDLDALLD---------MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRT   88 (155)
Q Consensus        18 KKrtf~kFtYRG~~ld~L~~---------ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt   88 (155)
                      |||+|++|||||+|||||++         ||+|||++|+||||||++.||+..++.+||+++++++++++++++|++|+|
T Consensus         4 ~k~~~~kftyrG~~l~~L~~~~~~~~~~~m~~~~~~~l~~ar~RRSlkKGpfv~~~~LLkKi~k~~~~~~~~~k~~vIKT   83 (144)
T 2xzm_S            4 NKKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKT   83 (144)
T ss_dssp             -------CCCCTTCHHHHHHHHSSTTCCSSSCHHHHHHSCHHHHHHHHHHCCSHHHHHHHHHHHHHHHSCTTTCCCCEEE
T ss_pred             cccceeeeeecCCcHHHHHhhhcccccccCCHHHHHHHhchhhhhhhhCCCCcccHHHHHHHHHHhhhhhccCCCceEEE
Confidence            67899999999999999999         999999999999999999999998899999999999988888889999999


Q ss_pred             ccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCC
Q 031653           89 HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSS  149 (155)
Q Consensus        89 ~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS  149 (155)
                      |+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||+++.|++|||||||||
T Consensus        84 wsR~stIlPemVG~ti~VyNGK~fvpV~IteeMVGHKLGEFa~TRk~~~H~~pGigat~s~  144 (144)
T 2xzm_S           84 HYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTHGKTGAAGGKGK  144 (144)
T ss_dssp             CCTTCBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGSCCSCCCCCCC---------
T ss_pred             eccCcCcCHhHCCcEEEEecCCeeeeeeecccccceeeeceeeecccCccCCCCcCcccCC
Confidence            9999999999999999999999999999999999999999999999999999999999997

>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=3.7e-39  Score=235.64  Aligned_cols=85  Identities=31%  Similarity=0.520  Sum_probs=77.6

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031653           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |.||+|++|+   +||++++++++   .+ ++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus         1 M~RS~~Kgpfv~~~Llkki~~~~~---~~-~~~~ikT~sR~stIlPemVG~ti~VhNGK~fv~V~It~~MVGhkLGEFa~   76 (92)
T 3bbn_S            1 MTRSLKKNPFVANHLLRKIEKLNK---KA-EKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAP   76 (92)
T ss_dssp             CCCSCSSCCCCCHHHHHHHHTTTT---TT-CCCCEEECCCSCCCCTTCTTCCEEEECSSCEEEECCCSSCSSCCSTTTSC
T ss_pred             CCCccccCcccCHHHHHHHHHHHh---cC-CCcceEEEecCcccChhhcCcEEEEecCceEEEEEEeccccceEecceee
Confidence            6899999997   89999998765   23 37899999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCCCCC
Q 031653          132 SYKPVKHGRPGI  143 (155)
Q Consensus       132 Trk~~~H~~pGi  143 (155)
                      ||+++.|++..-
T Consensus        77 Trk~~~H~~~~~   88 (92)
T 3bbn_S           77 TLNFRGHAKNDN   88 (92)
T ss_dssp             SSCCSSSCCCCC
T ss_pred             eecccccCCCcc
Confidence            999999987543

>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...

Probab=100.00  E-value=3.9e-39  Score=236.01  Aligned_cols=83  Identities=35%  Similarity=0.549  Sum_probs=69.5

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031653           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |.||+|++|+   +||++++++++.    ++|++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus         1 M~RS~~Kgpfv~~~Llkki~~~~~~----~~~~~ikT~sR~stIlP~mVG~ti~VhNGK~fv~V~It~eMVGhkLGEFa~   76 (93)
T 3a1p_B            1 MPRSLKKGVFVDDHLLEKVLELNAK----GEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAP   76 (93)
T ss_dssp             --------CCCCHHHHHHHHHHHHH----TCCCCEEECCSSSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGCC
T ss_pred             CCCccccCcccCHHHHHHHHHHHhc----CCCcceEEEecCcCcChhhcCcEEEEecCceEEEEEeccCccceeecceee
Confidence            6899999997   899999988763    247899999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCCC
Q 031653          132 SYKPVKHGRP  141 (155)
Q Consensus       132 Trk~~~H~~p  141 (155)
                      ||+++.|++.
T Consensus        77 Trk~~~H~~~   86 (93)
T 3a1p_B           77 TRTYRGHGKE   86 (93)
T ss_dssp             CSCCCCTTGG
T ss_pred             eecccccCcc
Confidence            9999999753

>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 4gaq_S* 4gas_S* 2qal_S* 1p6g_S ...

Probab=100.00  E-value=6.6e-39  Score=234.39  Aligned_cols=82  Identities=38%  Similarity=0.568  Sum_probs=71.9

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031653           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |.||+|++|+   +||++++++++..    ++++|+||+|+|+|||+|||++|+|||||+|++|+|+||||||||||||+
T Consensus         1 M~RS~~KGpfv~~~Llkki~k~~~~~----~~~~ikT~sR~stIlP~mVG~ti~VyNGK~fv~V~It~~MVGhkLGEFa~   76 (92)
T 3i1m_S            1 MPRSLKKGPFIDLHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAP   76 (92)
T ss_dssp             --CCCCSSCCCCHHHHHHHHHHHHTC----CCSCCEECCTTCBCCGGGSSCCCEEECSSSEEECCCCTTCCSSBGGGSSC
T ss_pred             CCcccccCcCcCHHHHHHHHHHHhcC----CCcceEEecCCCEechHHCCCEEEEEcCceEEEEEeecCeeeeEeeeeee
Confidence            7899999997   9999999987632    46789999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCC
Q 031653          132 SYKPVKHGR  140 (155)
Q Consensus       132 Trk~~~H~~  140 (155)
                      ||+++.|++
T Consensus        77 TRk~~~H~~   85 (92)
T 3i1m_S           77 TRTYRGHAA   85 (92)
T ss_dssp             CCCCC----
T ss_pred             EecccccCc
Confidence            999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d2gy9s1	79	d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherich	4e-26
d2uubs1	80	d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus t	9e-25

>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Escherichia coli [TaxId: 562]

 Score = 92.5 bits (230), Expect = 4e-26
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +  L+K ++    G+K  P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 1   RSLKKGPFIDLHLLKKVEKAVESGDKK-PLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 59

Query: 117 IKPEMIGHYLAEFSI 131
           +  EM+GH L EF+ 
Sbjct: 60  VTDEMVGHKLGEFAP 74

>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Thermus thermophilus [TaxId: 274]

 Score = 89.0 bits (221), Expect = 9e-25
 Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+        L K       GEK   ++T  R   IVPEM+G  I VYNGK    V 
Sbjct: 2   RSLKKGVFVDDHLLEKVLELNAKGEKR-LIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVY 60

Query: 117 IKPEMIGHYLAEFSI 131
           I   M+GH L EF+ 
Sbjct: 61  ITENMVGHKLGEFAP 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d2uubs1	80	Ribosomal protein S19 {Thermus thermophilus [TaxId	100.0
d2gy9s1	79	Ribosomal protein S19 {Escherichia coli [TaxId: 56	100.0

>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.3e-36  Score=212.45  Aligned_cols=76  Identities=36%  Similarity=0.531  Sum_probs=68.8

Q ss_pred             hcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeeee
Q 031653           56 QRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSIS  132 (155)
Q Consensus        56 ~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~T  132 (155)
                      .||+||+|+   +||+++.++..    ..++++|+||+|+|+|+|+|||++|+|||||+|++|+|++|||||||||||+|
T Consensus         1 ~RS~~Kgpfv~~~Llkki~~~~~----~~~k~~IkT~sR~s~IlP~~VG~~~~VyNGk~fv~v~It~eMVGhklGEFa~T   76 (80)
T d2uubs1           1 PRSLKKGVFVDDHLLEKVLELNA----KGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPT   76 (80)
T ss_dssp             CCCCCSSCCCCHHHHHHHHTTTS----SCCCSEEEECCSSSBCCGGGTTCEEEEECSSCEEEEECCGGGTTSBSGGGSCC
T ss_pred             CCCcccCcCccHHHHHHHHHHHh----cCCCCcEeEeccccEechHHcceEEEEEeCCeeEeEEeccCcccceeeccccc
Confidence            389999985   89999987653    23467899999999999999999999999999999999999999999999999


Q ss_pred             eec
Q 031653          133 YKP  135 (155)
Q Consensus       133 rk~  135 (155)
                      |++
T Consensus        77 R~f   79 (80)
T d2uubs1          77 RTY   79 (80)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            975

>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.3e-36  Score=211.61  Aligned_cols=75  Identities=40%  Similarity=0.602  Sum_probs=68.6

Q ss_pred             cCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeeeee
Q 031653           57 RGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISY  133 (155)
Q Consensus        57 Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Tr  133 (155)
                      ||+||+|+   +||+++.++....    ++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||
T Consensus         1 RS~~KGpfv~~~Llkki~k~~~~~----~~~~IkT~sR~s~IlP~~VG~~i~VyNGk~fv~v~It~eMVGhklGEFa~TR   76 (79)
T d2gy9s1           1 RSLKKGPFIDLHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTR   76 (79)
T ss_dssp             CCCTTCCCCCTTTTSHHHHGGGGS----CCSCEEESCTTSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGSCSS
T ss_pred             CCCccCccccHHHHHHHHHHHhcC----CCCcEEEEecccccChHHhCcEEEEEeCCeeEEEEeccCccceeeecccccc
Confidence            89999985   8999998876532    3568999999999999999999999999999999999999999999999999


Q ss_pred             ec
Q 031653          134 KP  135 (155)
Q Consensus       134 k~  135 (155)
                      ++
T Consensus        77 ~f   78 (79)
T d2gy9s1          77 TY   78 (79)
T ss_dssp             CC
T ss_pred             cC
Confidence            75