Citrus Sinensis ID: 031666


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
MATENQVPGSVGTSASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFCSRYQISAAMAFLTWFLSMASSLFNLWLLPSL
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcHHHHHHHHHHHHHHHccHEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
matenqvpgsvgtsASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVlvkcpirqpgVLLIIVVGDWVLSILTLAAACSTASVVDLLLraenpycppkfcsrYQISAAMAFLTWFLSMASSLFnlwllpsl
matenqvpgsvgtsaslSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFCSRYQISAAMAFLTWFLSMASSLFnlwllpsl
MATENQVPGSVGTSASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFCSRYQISAAMAFLTWFLSMASSLFNLWLLPSL
*****************SLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFCSRYQISAAMAFLTWFLSMASSLFNLWLL***
**T****PGSVGTSASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFCSRYQISAAMAFLTWFLSMASSLFNLWLLPSL
*************SASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFCSRYQISAAMAFLTWFLSMASSLFNLWLLPSL
*********SVGTSASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFCSRYQISAAMAFLTWFLSMASSLFNLWLLPSL
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiii
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MATENQVPGSVGTSASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFCSRYQISAAMAFLTWFLSMASSLFNLWLLPSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query155 2.2.26 [Sep-21-2011]
Q10EJ2156 CASP-like protein Os03g07 yes no 0.890 0.884 0.681 3e-46
B8BPI2156 CASP-like protein OsI_382 N/A no 0.890 0.884 0.673 2e-45
P0CB17154 CASP-like protein At3g508 yes no 0.974 0.980 0.543 5e-41
Q66GI1152 CASP-like protein At4g372 no no 0.935 0.953 0.572 3e-38
B6U300159 CASP-like protein 12 OS=Z N/A no 0.890 0.867 0.644 1e-37
P0DI71178 CASP-like protein 3 OS=Gi N/A no 0.974 0.848 0.486 3e-33
Q3ECT8152 CASP-like protein At1g494 no no 0.832 0.848 0.584 2e-32
D5ACW4182 CASP-like protein 11 (Fra N/A no 0.870 0.741 0.455 2e-27
Q5N794153 CASP-like protein Os01g08 no no 0.954 0.967 0.419 6e-25
B8AC36153 CASP-like protein OsI_044 N/A no 0.954 0.967 0.419 6e-25
>sp|Q10EJ2|CSPLU_ORYSJ CASP-like protein Os03g0767900 OS=Oryza sativa subsp. japonica GN=Os03g0767900 PE=2 SV=1 Back     alignment and function desciption
 Score =  183 bits (465), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 94/138 (68%), Positives = 121/138 (87%)

Query: 17  LSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCP 76
           L LR+GQ +FSSASLLFMS+GVEF+SYT+FC+LVTIMGLVIPWS T+A++D YS+LV CP
Sbjct: 18  LGLRVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDVYSILVGCP 77

Query: 77  IRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFCSRYQISAAMAFL 136
           +R PGV++I+V+GDWVL+IL+LAAA S+A+V+DLLL+    +C P+FC RYQ+SA MAFL
Sbjct: 78  LRVPGVMVIVVIGDWVLAILSLAAASSSAAVIDLLLQFHGSHCSPRFCGRYQLSAMMAFL 137

Query: 137 TWFLSMASSLFNLWLLPS 154
           +WFL+ ASSLFNLW + S
Sbjct: 138 SWFLTAASSLFNLWFIAS 155





Oryza sativa subsp. japonica (taxid: 39947)
>sp|B8BPI2|CSPLU_ORYSI CASP-like protein OsI_38237 OS=Oryza sativa subsp. indica GN=OsI_38237 PE=2 SV=1 Back     alignment and function description
>sp|P0CB17|CSPLH_ARATH CASP-like protein At3g50810 OS=Arabidopsis thaliana GN=At3g50810 PE=2 SV=1 Back     alignment and function description
>sp|Q66GI1|CSPLT_ARATH CASP-like protein At4g37235 OS=Arabidopsis thaliana GN=At4g37235 PE=2 SV=1 Back     alignment and function description
>sp|B6U300|CSPLH_MAIZE CASP-like protein 12 OS=Zea mays PE=2 SV=2 Back     alignment and function description
>sp|P0DI71|CSPL3_GINBI CASP-like protein 3 OS=Ginkgo biloba GN=gba_locus_13664 PE=3 SV=1 Back     alignment and function description
>sp|Q3ECT8|CSPL4_ARATH CASP-like protein At1g49405 OS=Arabidopsis thaliana GN=At1g49405 PE=3 SV=1 Back     alignment and function description
>sp|D5ACW4|CSPLB_PICSI CASP-like protein 11 (Fragment) OS=Picea sitchensis PE=2 SV=2 Back     alignment and function description
>sp|Q5N794|CSPLR_ORYSJ CASP-like protein Os01g0847300 OS=Oryza sativa subsp. japonica GN=Os01g0847300 PE=2 SV=1 Back     alignment and function description
>sp|B8AC36|CSPLR_ORYSI CASP-like protein OsI_04425 OS=Oryza sativa subsp. indica GN=OsI_04425 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query155
224077788152 predicted protein [Populus trichocarpa] 0.974 0.993 0.880 1e-70
224105469152 predicted protein [Populus trichocarpa] 0.974 0.993 0.874 3e-69
255556159152 conserved hypothetical protein [Ricinus 0.974 0.993 0.854 6e-69
356538837155 PREDICTED: CASP-like protein At1g49405-l 0.974 0.974 0.854 2e-68
358248908152 uncharacterized protein LOC100791311 [Gl 0.974 0.993 0.860 2e-68
449455190152 PREDICTED: CASP-like protein Os03g076790 0.974 0.993 0.834 1e-66
225428588152 PREDICTED: CASP-like protein At1g49405 [ 0.974 0.993 0.834 7e-66
359495759152 PREDICTED: CASP-like protein At3g50810-l 0.974 0.993 0.708 1e-59
388523033166 unknown [Medicago truncatula] 0.974 0.909 0.827 1e-58
356559440165 PREDICTED: CASP-like protein At3g50810-l 0.974 0.915 0.682 2e-53
>gi|224077788|ref|XP_002305408.1| predicted protein [Populus trichocarpa] gi|222848372|gb|EEE85919.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 144/151 (95%)

Query: 5   NQVPGSVGTSASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMA 64
           + VPGSVGTSAS SLRLGQTIFSSASLLFMSLGVEFY+YT+FCYLVTIMGL IPWSFT+A
Sbjct: 2   DVVPGSVGTSASFSLRLGQTIFSSASLLFMSLGVEFYTYTAFCYLVTIMGLTIPWSFTLA 61

Query: 65  IVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFC 124
           IVDGYSVLVKCP+RQPG+LLIIV+GDWVLS LTLAAACSTASVVDLLL ++  YCPPKFC
Sbjct: 62  IVDGYSVLVKCPVRQPGILLIIVLGDWVLSTLTLAAACSTASVVDLLLHSDGSYCPPKFC 121

Query: 125 SRYQISAAMAFLTWFLSMASSLFNLWLLPSL 155
           SRYQISAAMAFL+WFLS+ASSLFNLWLLPSL
Sbjct: 122 SRYQISAAMAFLSWFLSVASSLFNLWLLPSL 152




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105469|ref|XP_002313821.1| predicted protein [Populus trichocarpa] gi|222850229|gb|EEE87776.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556159|ref|XP_002519114.1| conserved hypothetical protein [Ricinus communis] gi|223541777|gb|EEF43325.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356538837|ref|XP_003537907.1| PREDICTED: CASP-like protein At1g49405-like [Glycine max] Back     alignment and taxonomy information
>gi|358248908|ref|NP_001239705.1| uncharacterized protein LOC100791311 [Glycine max] gi|255638902|gb|ACU19753.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449455190|ref|XP_004145336.1| PREDICTED: CASP-like protein Os03g0767900-like [Cucumis sativus] gi|449472572|ref|XP_004153635.1| PREDICTED: CASP-like protein Os03g0767900-like [Cucumis sativus] gi|449502360|ref|XP_004161618.1| PREDICTED: CASP-like protein Os03g0767900-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225428588|ref|XP_002284707.1| PREDICTED: CASP-like protein At1g49405 [Vitis vinifera] gi|297741401|emb|CBI32532.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495759|ref|XP_003635083.1| PREDICTED: CASP-like protein At3g50810-like [Vitis vinifera] gi|298205063|emb|CBI38359.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388523033|gb|AFK49578.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356559440|ref|XP_003548007.1| PREDICTED: CASP-like protein At3g50810-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query155
TAIR|locus:504956317152 AT1G49405 "AT1G49405" [Arabido 0.961 0.980 0.626 8.5e-49
TAIR|locus:2077962154 AT3G50810 "AT3G50810" [Arabido 0.961 0.967 0.550 2e-40
TAIR|locus:1006230287152 AT4G37235 "AT4G37235" [Arabido 0.909 0.927 0.587 3e-37
TAIR|locus:2185103152 AT5G02060 "AT5G02060" [Arabido 0.922 0.940 0.428 4.5e-27
TAIR|locus:2086258152 AT3G23200 "AT3G23200" [Arabido 0.948 0.967 0.409 2.5e-26
TAIR|locus:2084445154 AT3G53850 "AT3G53850" [Arabido 0.941 0.948 0.4 7.6e-25
TAIR|locus:2057497179 AT2G28370 "AT2G28370" [Arabido 0.961 0.832 0.38 3.3e-24
TAIR|locus:2061743180 AT2G37200 "AT2G37200" [Arabido 0.929 0.8 0.356 3.1e-19
TAIR|locus:504956317 AT1G49405 "AT1G49405" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 94/150 (62%), Positives = 122/150 (81%)

Query:     6 QVPGSVGTSASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAI 65
             +VPGSVGT+ASLSLRLGQ + +  SLLFM++GV FY +T+FCYLVTIM L IPW+ T+A+
Sbjct:     3 EVPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTLAM 62

Query:    66 VDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFCS 125
             VD Y V+++ P ++P +LL I +GDWV+S+L LA+A S ASVVD+L R+    CPP  C+
Sbjct:    63 VDIYCVILQQPFQKPRILLAISIGDWVVSVLALASASSAASVVDIL-RSNESSCPPTICN 121

Query:   126 RYQISAAMAFLTWFLSMASSLFNLWLLPSL 155
             RYQ +A +AFLTWFLS++SSLFNLWLLPSL
Sbjct:   122 RYQFAATLAFLTWFLSLSSSLFNLWLLPSL 151




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2077962 AT3G50810 "AT3G50810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230287 AT4G37235 "AT4G37235" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185103 AT5G02060 "AT5G02060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086258 AT3G23200 "AT3G23200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084445 AT3G53850 "AT3G53850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057497 AT2G28370 "AT2G28370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061743 AT2G37200 "AT2G37200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B8BPI2CSPLU_ORYSINo assigned EC number0.67390.89030.8846N/Ano
P0CB17CSPLH_ARATHNo assigned EC number0.54300.97410.9805yesno
Q10EJ2CSPLU_ORYSJNo assigned EC number0.68110.89030.8846yesno
B6U300CSPLH_MAIZENo assigned EC number0.64490.89030.8679N/Ano

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pg.C_LG_IV1232
hypothetical protein (152 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query155
pfam04535150 pfam04535, DUF588, Domain of unknown function (DUF 2e-21
>gnl|CDD|218134 pfam04535, DUF588, Domain of unknown function (DUF588) Back     alignment and domain information
 Score = 84.3 bits (209), Expect = 2e-21
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 20/151 (13%)

Query: 9   GSVGTSASLSLRLGQTIFSSASLLFM------------SLGVEFYSYTSFCYLVTIMGLV 56
           G     A L LRL   + + A+ + M                 F    +F YLV    + 
Sbjct: 1   GRPLRLAELVLRLAAFVLALAAAVVMGTNKQTKPFFFIQKKASFSDLPAFRYLVVANAIA 60

Query: 57  IPWSFTMAIVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAE- 115
             +S    ++  Y +  K P R  G+  ++ + D V++ L LAAA + A++V L      
Sbjct: 61  AGYSLLQLVLSVYLLSRKKP-RTKGLAWLLFILDQVMAYLLLAAASAAAAIVYLARNGNS 119

Query: 116 ----NPYCP--PKFCSRYQISAAMAFLTWFL 140
                  C    +FC+R   S A++FL + L
Sbjct: 120 HANWMKICNQFGRFCNRAAASVALSFLAFLL 150


This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices. Length = 150

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 155
PF04535149 DUF588: Domain of unknown function (DUF588); Inter 99.95
TIGR01569154 A_tha_TIGR01569 plant integral membrane protein TI 99.82
PF01284144 MARVEL: Membrane-associating domain; InterPro: IPR 98.87
KOG4016233 consensus Synaptic vesicle protein Synaptogyrin in 80.76
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity Back     alignment and domain information
Probab=99.95  E-value=3.5e-27  Score=182.06  Aligned_cols=129  Identities=29%  Similarity=0.382  Sum_probs=119.4

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhhccc------------cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 031666           10 SVGTSASLSLRLGQTIFSSASLLFMSLGVE------------FYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPI   77 (155)
Q Consensus        10 ~~Gt~~~L~LR~~q~~fa~~sl~~M~s~~~------------F~s~TaF~yLVa~~~Lq~lwSl~la~~d~yall~k~~l   77 (155)
                      ++++..+++||+.|++++++|+++|++++|            |+++++|+|+|+++++++.||+.|++.++|.+..|+ .
T Consensus         1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~-~   79 (149)
T PF04535_consen    1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK-L   79 (149)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C
Confidence            356789999999999999999999999998            999999999999999999999999999999999999 7


Q ss_pred             CCcceeeeeeehhHHHHHHHHHhhhhhhHHHHHHHHcCC------CCCCcc--cChHHHHHHHHHHHHHHH
Q 031666           78 RQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAEN------PYCPPK--FCSRYQISAAMAFLTWFL  140 (155)
Q Consensus        78 ~~~~~~~l~~vGD~V~a~L~~aAAcasagvt~vL~~~d~------~~C~~~--~C~~~~~S~amAFlswf~  140 (155)
                      +++...++.+++||+.+||+++|+++++++++ +.++|.      +.|...  +|+|+++|++++|++|++
T Consensus        80 ~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~-~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~  149 (149)
T PF04535_consen   80 RSKLLAWFLFILDQVLAYLLFSAASAAAAVAY-LGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA  149 (149)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence            77788888999999999999999999999995 877773      469976  699999999999999974



It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569 Back     alignment and domain information
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain Back     alignment and domain information
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00