Citrus Sinensis ID: 031666
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 155 | ||||||
| 224077788 | 152 | predicted protein [Populus trichocarpa] | 0.974 | 0.993 | 0.880 | 1e-70 | |
| 224105469 | 152 | predicted protein [Populus trichocarpa] | 0.974 | 0.993 | 0.874 | 3e-69 | |
| 255556159 | 152 | conserved hypothetical protein [Ricinus | 0.974 | 0.993 | 0.854 | 6e-69 | |
| 356538837 | 155 | PREDICTED: CASP-like protein At1g49405-l | 0.974 | 0.974 | 0.854 | 2e-68 | |
| 358248908 | 152 | uncharacterized protein LOC100791311 [Gl | 0.974 | 0.993 | 0.860 | 2e-68 | |
| 449455190 | 152 | PREDICTED: CASP-like protein Os03g076790 | 0.974 | 0.993 | 0.834 | 1e-66 | |
| 225428588 | 152 | PREDICTED: CASP-like protein At1g49405 [ | 0.974 | 0.993 | 0.834 | 7e-66 | |
| 359495759 | 152 | PREDICTED: CASP-like protein At3g50810-l | 0.974 | 0.993 | 0.708 | 1e-59 | |
| 388523033 | 166 | unknown [Medicago truncatula] | 0.974 | 0.909 | 0.827 | 1e-58 | |
| 356559440 | 165 | PREDICTED: CASP-like protein At3g50810-l | 0.974 | 0.915 | 0.682 | 2e-53 |
| >gi|224077788|ref|XP_002305408.1| predicted protein [Populus trichocarpa] gi|222848372|gb|EEE85919.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 133/151 (88%), Positives = 144/151 (95%)
Query: 5 NQVPGSVGTSASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMA 64
+ VPGSVGTSAS SLRLGQTIFSSASLLFMSLGVEFY+YT+FCYLVTIMGL IPWSFT+A
Sbjct: 2 DVVPGSVGTSASFSLRLGQTIFSSASLLFMSLGVEFYTYTAFCYLVTIMGLTIPWSFTLA 61
Query: 65 IVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFC 124
IVDGYSVLVKCP+RQPG+LLIIV+GDWVLS LTLAAACSTASVVDLLL ++ YCPPKFC
Sbjct: 62 IVDGYSVLVKCPVRQPGILLIIVLGDWVLSTLTLAAACSTASVVDLLLHSDGSYCPPKFC 121
Query: 125 SRYQISAAMAFLTWFLSMASSLFNLWLLPSL 155
SRYQISAAMAFL+WFLS+ASSLFNLWLLPSL
Sbjct: 122 SRYQISAAMAFLSWFLSVASSLFNLWLLPSL 152
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105469|ref|XP_002313821.1| predicted protein [Populus trichocarpa] gi|222850229|gb|EEE87776.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255556159|ref|XP_002519114.1| conserved hypothetical protein [Ricinus communis] gi|223541777|gb|EEF43325.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356538837|ref|XP_003537907.1| PREDICTED: CASP-like protein At1g49405-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|358248908|ref|NP_001239705.1| uncharacterized protein LOC100791311 [Glycine max] gi|255638902|gb|ACU19753.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|449455190|ref|XP_004145336.1| PREDICTED: CASP-like protein Os03g0767900-like [Cucumis sativus] gi|449472572|ref|XP_004153635.1| PREDICTED: CASP-like protein Os03g0767900-like [Cucumis sativus] gi|449502360|ref|XP_004161618.1| PREDICTED: CASP-like protein Os03g0767900-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|225428588|ref|XP_002284707.1| PREDICTED: CASP-like protein At1g49405 [Vitis vinifera] gi|297741401|emb|CBI32532.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359495759|ref|XP_003635083.1| PREDICTED: CASP-like protein At3g50810-like [Vitis vinifera] gi|298205063|emb|CBI38359.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|388523033|gb|AFK49578.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356559440|ref|XP_003548007.1| PREDICTED: CASP-like protein At3g50810-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 155 | ||||||
| TAIR|locus:504956317 | 152 | AT1G49405 "AT1G49405" [Arabido | 0.961 | 0.980 | 0.626 | 8.5e-49 | |
| TAIR|locus:2077962 | 154 | AT3G50810 "AT3G50810" [Arabido | 0.961 | 0.967 | 0.550 | 2e-40 | |
| TAIR|locus:1006230287 | 152 | AT4G37235 "AT4G37235" [Arabido | 0.909 | 0.927 | 0.587 | 3e-37 | |
| TAIR|locus:2185103 | 152 | AT5G02060 "AT5G02060" [Arabido | 0.922 | 0.940 | 0.428 | 4.5e-27 | |
| TAIR|locus:2086258 | 152 | AT3G23200 "AT3G23200" [Arabido | 0.948 | 0.967 | 0.409 | 2.5e-26 | |
| TAIR|locus:2084445 | 154 | AT3G53850 "AT3G53850" [Arabido | 0.941 | 0.948 | 0.4 | 7.6e-25 | |
| TAIR|locus:2057497 | 179 | AT2G28370 "AT2G28370" [Arabido | 0.961 | 0.832 | 0.38 | 3.3e-24 | |
| TAIR|locus:2061743 | 180 | AT2G37200 "AT2G37200" [Arabido | 0.929 | 0.8 | 0.356 | 3.1e-19 |
| TAIR|locus:504956317 AT1G49405 "AT1G49405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 94/150 (62%), Positives = 122/150 (81%)
Query: 6 QVPGSVGTSASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPWSFTMAI 65
+VPGSVGT+ASLSLRLGQ + + SLLFM++GV FY +T+FCYLVTIM L IPW+ T+A+
Sbjct: 3 EVPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTLAM 62
Query: 66 VDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAENPYCPPKFCS 125
VD Y V+++ P ++P +LL I +GDWV+S+L LA+A S ASVVD+L R+ CPP C+
Sbjct: 63 VDIYCVILQQPFQKPRILLAISIGDWVVSVLALASASSAASVVDIL-RSNESSCPPTICN 121
Query: 126 RYQISAAMAFLTWFLSMASSLFNLWLLPSL 155
RYQ +A +AFLTWFLS++SSLFNLWLLPSL
Sbjct: 122 RYQFAATLAFLTWFLSLSSSLFNLWLLPSL 151
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| TAIR|locus:2077962 AT3G50810 "AT3G50810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:1006230287 AT4G37235 "AT4G37235" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2185103 AT5G02060 "AT5G02060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2086258 AT3G23200 "AT3G23200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2084445 AT3G53850 "AT3G53850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2057497 AT2G28370 "AT2G28370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061743 AT2G37200 "AT2G37200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| estExt_fgenesh4_pg.C_LG_IV1232 | hypothetical protein (152 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 155 | |||
| pfam04535 | 150 | pfam04535, DUF588, Domain of unknown function (DUF | 2e-21 |
| >gnl|CDD|218134 pfam04535, DUF588, Domain of unknown function (DUF588) | Back alignment and domain information |
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Score = 84.3 bits (209), Expect = 2e-21
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 20/151 (13%)
Query: 9 GSVGTSASLSLRLGQTIFSSASLLFM------------SLGVEFYSYTSFCYLVTIMGLV 56
G A L LRL + + A+ + M F +F YLV +
Sbjct: 1 GRPLRLAELVLRLAAFVLALAAAVVMGTNKQTKPFFFIQKKASFSDLPAFRYLVVANAIA 60
Query: 57 IPWSFTMAIVDGYSVLVKCPIRQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAE- 115
+S ++ Y + K P R G+ ++ + D V++ L LAAA + A++V L
Sbjct: 61 AGYSLLQLVLSVYLLSRKKP-RTKGLAWLLFILDQVMAYLLLAAASAAAAIVYLARNGNS 119
Query: 116 ----NPYCP--PKFCSRYQISAAMAFLTWFL 140
C +FC+R S A++FL + L
Sbjct: 120 HANWMKICNQFGRFCNRAAASVALSFLAFLL 150
|
This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices. Length = 150 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 155 | |||
| PF04535 | 149 | DUF588: Domain of unknown function (DUF588); Inter | 99.95 | |
| TIGR01569 | 154 | A_tha_TIGR01569 plant integral membrane protein TI | 99.82 | |
| PF01284 | 144 | MARVEL: Membrane-associating domain; InterPro: IPR | 98.87 | |
| KOG4016 | 233 | consensus Synaptic vesicle protein Synaptogyrin in | 80.76 |
| >PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity | Back alignment and domain information |
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Probab=99.95 E-value=3.5e-27 Score=182.06 Aligned_cols=129 Identities=29% Similarity=0.382 Sum_probs=119.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhccc------------cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 031666 10 SVGTSASLSLRLGQTIFSSASLLFMSLGVE------------FYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPI 77 (155)
Q Consensus 10 ~~Gt~~~L~LR~~q~~fa~~sl~~M~s~~~------------F~s~TaF~yLVa~~~Lq~lwSl~la~~d~yall~k~~l 77 (155)
++++..+++||+.|++++++|+++|++++| |+++++|+|+|+++++++.||+.|++.++|.+..|+ .
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~-~ 79 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK-L 79 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C
Confidence 356789999999999999999999999998 999999999999999999999999999999999999 7
Q ss_pred CCcceeeeeeehhHHHHHHHHHhhhhhhHHHHHHHHcCC------CCCCcc--cChHHHHHHHHHHHHHHH
Q 031666 78 RQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAEN------PYCPPK--FCSRYQISAAMAFLTWFL 140 (155)
Q Consensus 78 ~~~~~~~l~~vGD~V~a~L~~aAAcasagvt~vL~~~d~------~~C~~~--~C~~~~~S~amAFlswf~ 140 (155)
+++...++.+++||+.+||+++|+++++++++ +.++|. +.|... +|+|+++|++++|++|++
T Consensus 80 ~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~-~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 80 RSKLLAWFLFILDQVLAYLLFSAASAAAAVAY-LGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 77788888999999999999999999999995 877773 469976 699999999999999974
|
It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices. |
| >TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569 | Back alignment and domain information |
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| >PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain | Back alignment and domain information |
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| >KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00