Citrus Sinensis ID: 031708

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MLIRQARNFSKAYAAPLSSSLKTLFPSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITVNGKPGD
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHccccccEEEEEcccHHHHHHHHHccccccccccEEEEEEccEEEEEccccccccEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccHcccccccHHHHHccccccccHHHHHHHHHccccHHHHcccccccccccccccccccccccEEEEcccHHHccHHEEEEEEccccccEEEEEcccHHHHHHHHHccccHHccccEEEEEccccEEEEccHHHcHHHHccccccc
Coil and Loop (DISEMBL)
MLIRQARNFSKayaaplssslktlfpspadvvpgvaadvadvtgaddlvyteppvsstvkpamepsllqpgvviydgvchlchggvKWVIRADKYRKIKFcclqsqaaepylrlcgldrEDVLRRFLfvegpglyhqastgggwgitvngkpgd
Flexible Loop (DISEMBL)
mlirqarnFSKAYAAPLSSSLKTLFPSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPglyhqastgggwgitvngkpgd
Low Complexity Region (SEG)
MLIRQARNFSKAYAAPLSSSLKTLFPSpadvvpgvaadvadvtgaddLVYTEPPVSSTVKPAMEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITVNGKPGD
Disordered region (IsUnstruct)
***********************LF**PADVVPGVAADVADVTGADDLVYTE*************SLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITV******
Disordered Region (DISOPRED)
************************************ADVADVTGADDLVY*****************LQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITVNGKP**
Disordered Region (DISEMBL)
********FSKAYAAPLSSSLKTLFPSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITVNGKPGD
Disordered Region (DISPRO)
*********************************************D*L*YT****SSTVKPAMEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITVN*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLIRQARNFSKAYAAPLSSSLKTLFPSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITVNGKPGD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
P40761	137	Uncharacterized protein Y	yes	no	0.435	0.489	0.361	3e-06
Q9SSR1	172	DCC family protein At1g52	no	no	0.331	0.296	0.431	4e-06

>sp|P40761|YUXK_BACSU Uncharacterized protein YuxK OS=Bacillus subtilis (strain 168) GN=yuxK PE=3 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 72  VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGL--DREDVLRRFLFV 129
           V+++DGVC+LC+G V+++I+ D    I F  LQS+  +  L+  GL  DR D    F+F+
Sbjct: 10  VLLFDGVCNLCNGAVQFIIKRDPDGLISFTSLQSETGQSLLKKSGLPTDRFD---SFVFI 66

Query: 130 EGPGLYHQASTG 141
           E   +Y +++  
Sbjct: 67  EDGQVYTKSTAA 78

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9SSR1|Y1259_ARATH DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana GN=At1g52590 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%)

Query: 72  VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDV 122
           ++++DGVC+LC+GGVK+V   D+ R I+F  LQS+A +  L   G   +D+
Sbjct: 55  IMLFDGVCNLCNGGVKFVRDHDRNRSIRFEALQSEAGKKLLLRSGRAPDDI 105

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
255588184	213	conserved hypothetical protein [Ricinus	0.701	0.507	0.686	7e-38
224099711	208	predicted protein [Populus trichocarpa]	0.636	0.471	0.732	1e-35
118482345	220	unknown [Populus trichocarpa]	0.636	0.445	0.732	1e-35
297845448	536	RNase H domain-containing protein [Arabi	0.759	0.218	0.589	4e-35
334182808	213	Putative thiol-disulfide oxidoreductase	0.759	0.549	0.581	1e-33
171921105	492	RNase H domain-containing protein [Brass	0.714	0.223	0.6	2e-33
359473412	453	PREDICTED: uncharacterized protein LOC10	0.779	0.264	0.593	4e-33
296086506	216	unnamed protein product [Vitis vinifera]	0.5	0.356	0.844	9e-33
147777969	224	hypothetical protein VITISV_018709 [Viti	0.5	0.343	0.844	1e-32
449434879	242	PREDICTED: uncharacterized protein YuxK-	0.720	0.458	0.610	4e-32

>gi|255588184|ref|XP_002534526.1| conserved hypothetical protein [Ricinus communis] gi|223525107|gb|EEF27856.1| conserved hypothetical protein [Ricinus communis]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/115 (68%), Positives = 89/115 (77%), Gaps = 7/115 (6%)

Query: 28  PADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPGVVIYDGVCHLCHGGVK 87
           P D V   AADVA      +++Y  P  S+   P   P+LLQP VV+YDGVCHLCH GVK
Sbjct: 40  PIDTVSETAADVAG-----EVLY--PDASTLPSPVTLPTLLQPRVVVYDGVCHLCHRGVK 92

Query: 88  WVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG 142
           WVI+ADKYRKIKFCCLQS+AAEPYLRLCGLDR+DVLRRFLF+EGP LYHQAST  
Sbjct: 93  WVIKADKYRKIKFCCLQSKAAEPYLRLCGLDRDDVLRRFLFIEGPDLYHQASTAA 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099711|ref|XP_002311587.1| predicted protein [Populus trichocarpa] gi|222851407|gb|EEE88954.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 84/101 (83%), Gaps = 3/101 (2%)

Query: 43  TGADDLVYTEPPVSSTVKP-AMEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFC 101
           +  ++L+Y  P V+STVKP A  P+LLQP VV+YD VCHLCH GVKWVI ADKY KIKFC
Sbjct: 45  SAEEELLY--PSVASTVKPVATLPTLLQPRVVVYDAVCHLCHRGVKWVIEADKYGKIKFC 102

Query: 102 CLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG 142
           CLQS+AAEPYL LCGL+REDVLRRFLF+EGPG YHQAST  
Sbjct: 103 CLQSKAAEPYLALCGLNREDVLRRFLFIEGPGSYHQASTAA 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482345|gb|ABK93096.1| unknown [Populus trichocarpa]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 84/101 (83%), Gaps = 3/101 (2%)

Query: 43  TGADDLVYTEPPVSSTVKP-AMEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFC 101
           +  ++L+Y  P V+STVKP A  P+LLQP VV+YD VCHLCH GVKWVI ADKY KIKFC
Sbjct: 50  SAEEELLY--PSVASTVKPVATLPTLLQPRVVVYDAVCHLCHRGVKWVIEADKYGKIKFC 107

Query: 102 CLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG 142
           CLQS+AAEPYL LCGL+REDVLRRFLF+EGPG YHQAST  
Sbjct: 108 CLQSKAAEPYLALCGLNREDVLRRFLFIEGPGSYHQASTAA 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845448|ref|XP_002890605.1| RNase H domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336447|gb|EFH66864.1| RNase H domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 85/117 (72%)

Query: 26  PSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPGVVIYDGVCHLCHGG 85
           P PA     ++   A++   + + Y +P  SST  P + P  LQP VV+YDGVCHLCHGG
Sbjct: 352 PLPALSSGAISRTTAEIDADEAVAYLDPAESSTAIPVIMPGNLQPRVVVYDGVCHLCHGG 411

Query: 86  VKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG 142
           VKW+I+ADKYRKIKFCCLQS+AAEPYL + G+ +EDV +RFLFVEG G YHQAST  
Sbjct: 412 VKWIIKADKYRKIKFCCLQSKAAEPYLEVSGVTKEDVQKRFLFVEGLGFYHQASTAA 468

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182808|ref|NP_001185076.1| Putative thiol-disulfide oxidoreductase DCC [Arabidopsis thaliana] gi|9369400|gb|AAF87148.1|AC002423_13 T23E23.25 [Arabidopsis thaliana] gi|332192356|gb|AEE30477.1| Putative thiol-disulfide oxidoreductase DCC [Arabidopsis thaliana]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 83/117 (70%)

Query: 26  PSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPGVVIYDGVCHLCHGG 85
           PSPA     ++   A++   +     +P  S T  P + P  LQP VV+YDGVCHLCHGG
Sbjct: 29  PSPAFSTGAISRTTAEIDADEVTACLDPAESVTKIPVIMPGNLQPRVVVYDGVCHLCHGG 88

Query: 86  VKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG 142
           VKW+I+ADKYRKIKFCCLQS+AAEPYL + G+ REDV +RFLF+EG G YHQAST  
Sbjct: 89  VKWIIKADKYRKIKFCCLQSKAAEPYLEVSGVTREDVQKRFLFIEGLGFYHQASTAA 145

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171921105|gb|ACB59203.1| RNase H domain-containing protein [Brassica oleracea]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 81/110 (73%)

Query: 32  VPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPGVVIYDGVCHLCHGGVKWVIR 91
           V    A  A++   D + Y++P  S T  P    + LQP VV+YDGVCHLCHGGVKW+I+
Sbjct: 328 VSRTTAGAAEIDADDAVAYSDPTESPTAMPITMQAHLQPRVVVYDGVCHLCHGGVKWIIK 387

Query: 92  ADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTG 141
           ADKYRKIKFCCLQS+AAEPYL + G+ +EDV +RFLF+EG G YHQAST 
Sbjct: 388 ADKYRKIKFCCLQSKAAEPYLTVSGVTKEDVQKRFLFIEGLGSYHQASTA 437

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473412|ref|XP_002266599.2| PREDICTED: uncharacterized protein LOC100255243 [Vitis vinifera]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/128 (59%), Positives = 88/128 (68%), Gaps = 8/128 (6%)

Query: 17  LSSSLKTLFPS--PADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPGVVI 74
           +S S  +LF    P+ ++ G   D       DDL+    P           +LLQP VV+
Sbjct: 260 VSPSFHSLFSRSPPSRLLSGAPVDAV----GDDLLLQHSPPPPVKPLIP--TLLQPRVVV 313

Query: 75  YDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134
           YDGVCHLCH GVK VI ADK+RKIKFCCLQS+AAEPYLR+CGLDREDVLRRFLF+EGPGL
Sbjct: 314 YDGVCHLCHQGVKRVIAADKHRKIKFCCLQSKAAEPYLRVCGLDREDVLRRFLFIEGPGL 373

Query: 135 YHQASTGG 142
           YHQAST  
Sbjct: 374 YHQASTAA 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086506|emb|CBI32095.3| unnamed protein product [Vitis vinifera]

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 71/77 (92%)

Query: 66  SLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRR 125
           +LLQP VV+YDGVCHLCH GVK VI ADK+RKIKFCCLQS+AAEPYLR+CGLDREDVLRR
Sbjct: 68  TLLQPRVVVYDGVCHLCHQGVKRVIAADKHRKIKFCCLQSKAAEPYLRVCGLDREDVLRR 127

Query: 126 FLFVEGPGLYHQASTGG 142
           FLF+EGPGLYHQAST  
Sbjct: 128 FLFIEGPGLYHQASTAA 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777969|emb|CAN65134.1| hypothetical protein VITISV_018709 [Vitis vinifera]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 71/77 (92%)

Query: 66  SLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRR 125
           +LLQP VV+YDGVCHLCH GVK VI ADK+RKIKFCCLQS+AAEPYLR+CGLDREDVLRR
Sbjct: 68  TLLQPRVVVYDGVCHLCHQGVKRVIAADKHRKIKFCCLQSKAAEPYLRVCGLDREDVLRR 127

Query: 126 FLFVEGPGLYHQASTGG 142
           FLF+EGPGLYHQAST  
Sbjct: 128 FLFIEGPGLYHQASTDA 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434879|ref|XP_004135223.1| PREDICTED: uncharacterized protein YuxK-like [Cucumis sativus]

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/118 (61%), Positives = 84/118 (71%), Gaps = 7/118 (5%)

Query: 27  SPADVVPGVAADVADVTGAD--DLVYTEPPVSSTVKPAMEPSLLQPGVVIYDGVCHLCHG 84
           +PAD+     ADV +    D  D+V     V+S     + P+LLQP VVIYDGVCHLCH 
Sbjct: 59  APADI-----ADVPEEVVKDYVDVVSPAVAVNSLAAEPVFPTLLQPRVVIYDGVCHLCHR 113

Query: 85  GVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG 142
           GVKWVI+ DKY+KIKFCCLQS+ AEPYLRL GLDREDV  RF+F+EG G YHQAST  
Sbjct: 114 GVKWVIKVDKYKKIKFCCLQSKTAEPYLRLSGLDREDVSHRFVFIEGHGSYHQASTAA 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
UNIPROTKB|Q87WV7	150	PSPTO_4436 "Uncharacterized pr	0.493	0.506	0.380	1.4e-07
UNIPROTKB|Q48N48	122	PSPPH_0898 "Uncharacterized pr	0.396	0.5	0.375	1.8e-07
TAIR|locus:2035159	172	AT1G52590 "AT1G52590" [Arabido	0.331	0.296	0.431	4.8e-07

UNIPROTKB|Q87WV7 PSPTO_4436 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 32/84 (38%), Positives = 47/84 (55%)

Query:    56 SSTVKPAMEPSLLQPG--VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLR 113
             S+T +P   P  L+ G  VV++DGVC LC+G  K++IR D+ ++I+   +QS   +  L 
Sbjct:     3 SNTPQPNPAP-FLKAGETVVLFDGVCKLCNGWAKFIIRHDRRQRIRLATVQSPEGQALLE 61

Query:   114 LCGL--DREDVLRRFLFVEGPGLY 135
               GL  DR D +     V G  LY
Sbjct:    62 WAGLPLDRFDTMAA---VTGDRLY 82

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48N48 PSPPH_0898 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 24/64 (37%), Positives = 41/64 (64%)

Query:    61 PAMEPS-LLQPG--VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGL 117
             P   P+  L+P   VV++DGVC LC+G VK++IR D +++++   +QS+  +  L+  GL
Sbjct:     2 PTTTPAPYLKPDECVVLFDGVCKLCNGVVKFLIRHDPHQRLRLAAVQSEQGQALLKWAGL 61

Query:   118 DRED 121
               +D
Sbjct:    62 PLDD 65

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035159 AT1G52590 "AT1G52590" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 22/51 (43%), Positives = 35/51 (68%)

Query:    72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDV 122
             ++++DGVC+LC+GGVK+V   D+ R I+F  LQS+A +  L   G   +D+
Sbjct:    55 IMLFDGVCNLCNGGVKFVRDHDRNRSIRFEALQSEAGKKLLLRSGRAPDDI 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.447    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      154       134   0.00091  102 3  11 22  0.40    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  138 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.18u 0.20s 12.38t   Elapsed:  00:00:01
  Total cpu time:  12.18u 0.20s 12.38t   Elapsed:  00:00:01
  Start:  Mon May 20 23:56:30 2013   End:  Mon May 20 23:56:31 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010287 "plastoglobule" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	154
pfam04134	113	pfam04134, DUF393, Protein of unknown function, DU	7e-16
COG3011	137	COG3011, COG3011, Predicted thiol-disulfide oxidor	3e-12

>gnl|CDD|217918 pfam04134, DUF393, Protein of unknown function, DUF393

 Score = 68.5 bits (168), Expect = 7e-16
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 73  VIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGP 132
           V+YDG C LC+  V+++ R D+  +++F  +QS   +  L   G+D ED+  R    +G 
Sbjct: 1   VLYDGECPLCNREVRFLERRDRGGRLRFVDIQSAEGQALLEAFGIDPEDLDSRLHVEDGG 60

Query: 133 GLYH 136
            +Y 
Sbjct: 61  DVYT 64

Members of this family have two highly conserved cysteine residues near their N-terminus. The function of these proteins is unknown. Length = 113

>gnl|CDD|225556 COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only]

 Score = 59.7 bits (145), Expect = 3e-12
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 72  VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131
           VV+YDGVC LC G V+++IR D+  +I+F  LQS+  +  L   GLD EDV    L VE 
Sbjct: 11  VVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDV-DSVLLVEA 69

Query: 132 PGLY 135
             L 
Sbjct: 70  GQLL 73

Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
COG3011	137	Predicted thiol-disulfide oxidoreductase [General	99.87
PF04134	114	DUF393: Protein of unknown function, DUF393; Inter	99.82
PF13728	215	TraF: F plasmid transfer operon protein	95.48
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	94.93
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	94.36
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	93.8
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	93.73
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	93.47
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	93.09
PTZ00051	98	thioredoxin; Provisional	92.95
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	92.15
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	92.06
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	91.73
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	91.49
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	91.27
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	90.73
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	90.66
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	90.65
cd02947	93	TRX_family TRX family; composed of two groups: Gro	90.44
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	90.4
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	90.36
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	90.34
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	90.24
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	90.2
COG3019	149	Predicted metal-binding protein [General function	89.92
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	89.37
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	89.3
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	89.01
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	88.98
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	88.9
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	88.8
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	88.63
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	88.6
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	88.59
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	88.37
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	88.01
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	87.8
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	87.6
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	87.56
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	87.31
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	87.01
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	86.97
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	86.37
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	86.35
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	86.15
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	86.08
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	85.86
PRK10638	83	glutaredoxin 3; Provisional	85.76
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	85.71
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	85.6
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	85.58
PRK13728	181	conjugal transfer protein TrbB; Provisional	85.28
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	85.23
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	85.19
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	85.18
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	85.03
PRK09381	109	trxA thioredoxin; Provisional	84.82
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	84.66
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	84.23
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	83.81
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	83.74
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	82.04
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	82.02
PHA03050	108	glutaredoxin; Provisional	82.02
PRK10824	115	glutaredoxin-4; Provisional	81.61
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	81.18
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	80.83
PTZ00102	477	disulphide isomerase; Provisional	80.59
PRK10996	139	thioredoxin 2; Provisional	80.12

>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]

Probab=99.87  E-value=4e-22  Score=154.43  Aligned_cols=82  Identities=39%  Similarity=0.615  Sum_probs=77.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHHH
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITV  148 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr~  148 (154)
                      ...+|+|||+|+||+++|+||+++|+.++|+|+++|++.|+++++.+|+++++. ++++++++ |+.|.+|||++++++.
T Consensus         8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~-~s~~~~~~-g~~~~~sdA~~~i~~~   85 (137)
T COG3011           8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDV-DSVLLVEA-GQLLVGSDAAIRILRL   85 (137)
T ss_pred             CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhh-heeeEecC-CceEeccHHHHHHHHH
Confidence            357999999999999999999999999999999999999999999999999996 79988876 7789999999999999


Q ss_pred             cCCC
Q 031708          149 NGKP  152 (154)
Q Consensus       149 lg~p  152 (154)
                      +++|
T Consensus        86 L~~~   89 (137)
T COG3011          86 LPGP   89 (137)
T ss_pred             CCcc
Confidence            9966

>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG

Probab=99.82  E-value=4.7e-20  Score=134.24  Aligned_cols=78  Identities=26%  Similarity=0.378  Sum_probs=71.8

Q ss_pred             EEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce-EEEehHHHHHHHHHcCC
Q 031708           73 VIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL-YHQASTGGGWGITVNGK  151 (154)
Q Consensus        73 VfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~-~y~gSdAvl~ilr~lg~  151 (154)
                      |||||+|+||+++|+|++++|+.++|+|+++|++.+.++++.+|++.+++++.+++ .++|+ +|.|+||++++++.+++
T Consensus         1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~~~   79 (114)
T PF04134_consen    1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRLPG   79 (114)
T ss_pred             CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHcCc
Confidence            69999999999999999999999999999999999998889999999999766766 55565 99999999999999987

Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].

>PF13728 TraF: F plasmid transfer operon protein

Probab=95.48  E-value=0.05  Score=44.61  Aligned_cols=60  Identities=10%  Similarity=0.130  Sum_probs=41.2

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcE--EEEEcCCc---------ccHhHHHhcCCChhhccceEEEEECCc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKI--KFCCLQSQ---------AAEPYLRLCGLDREDVLRRFLFVEGPG  133 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~--~F~~iQS~---------~g~~lL~~~Gl~~e~~~~Sivlid~~G  133 (154)
                      .++||+|.|++|+...--|+....+..|  ..+++.+.         ....+.+++|+..  . =++++++.++
T Consensus       124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~--~-Pal~Lv~~~~  194 (215)
T PF13728_consen  124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV--T-PALFLVNPNT  194 (215)
T ss_pred             EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc--C-CEEEEEECCC
Confidence            7899999999999999988876655544  44555431         1244567888852  2 3777777654

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=94.93  E-value=0.12  Score=34.78  Aligned_cols=65  Identities=9%  Similarity=0.166  Sum_probs=43.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCC---CcEEEEEcCCccc-----------------------HhHHHhcCCChhhccc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKY---RKIKFCCLQSQAA-----------------------EPYLRLCGLDREDVLR  124 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~---~r~~F~~iQS~~g-----------------------~~lL~~~Gl~~e~~~~  124 (154)
                      .+.||...|+.|.....-+.+.-.+   ..+.++.+.....                       .++.+.+|+..  . -
T Consensus        23 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-P   99 (116)
T cd02966          23 LVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG--L-P   99 (116)
T ss_pred             EEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc--c-c
Confidence            5678888999999888766554322   4677777766543                       45566777642  2 3


Q ss_pred             eEEEEECCceEEEe
Q 031708          125 RFLFVEGPGLYHQA  138 (154)
Q Consensus       125 Sivlid~~G~~y~g  138 (154)
                      +++++|++|++...
T Consensus       100 ~~~l~d~~g~v~~~  113 (116)
T cd02966         100 TTFLIDRDGRIRAR  113 (116)
T ss_pred             eEEEECCCCcEEEE
Confidence            67788888876543

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR02180 GRX_euk Glutaredoxin

Probab=94.36  E-value=0.16  Score=33.72  Aligned_cols=71  Identities=13%  Similarity=0.155  Sum_probs=48.2

Q ss_pred             EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccH-----hHHHhcCCChhhccceEEEEECCceEEEehHHHHHHH
Q 031708           72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAE-----PYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGI  146 (154)
Q Consensus        72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~-----~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~il  146 (154)
                      ++|+--.|+.|....+++.++.-.+.+.+..++.....     .+.+.+|..  .+ =+ +++  +|+...|++-++.+.
T Consensus         2 ~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~--~v-P~-v~i--~g~~igg~~~~~~~~   75 (84)
T TIGR02180         2 VVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQR--TV-PN-IFI--NGKFIGGCSDLLALY   75 (84)
T ss_pred             EEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCC--CC-Ce-EEE--CCEEEcCHHHHHHHH
Confidence            68889999999999999999885555888888653221     122333432  12 12 344  467788999888876


Q ss_pred             HH
Q 031708          147 TV  148 (154)
Q Consensus       147 r~  148 (154)
                      +.
T Consensus        76 ~~   77 (84)
T TIGR02180        76 KS   77 (84)
T ss_pred             Hc
Confidence            53

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=93.80  E-value=0.28  Score=33.84  Aligned_cols=60  Identities=17%  Similarity=0.139  Sum_probs=48.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .++|++.+|+=|......+.+..+  ++++.|+.+.......+++.+|+..+.. =+++++..
T Consensus        16 ~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~-P~~~~~~~   77 (103)
T cd02982          16 LVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDL-PVIAIINL   77 (103)
T ss_pred             EEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhC-CEEEEEec
Confidence            566788899999999998877553  4789999999988888999999986555 47777765

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=93.73  E-value=0.18  Score=35.36  Aligned_cols=62  Identities=15%  Similarity=0.244  Sum_probs=36.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc---C--CCcEEEEEcCCccc--------------------HhHHHhcCCChhhccc
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD---K--YRKIKFCCLQSQAA--------------------EPYLRLCGLDREDVLR  124 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D---r--~~r~~F~~iQS~~g--------------------~~lL~~~Gl~~e~~~~  124 (154)
                      ..++|+|-+|+.|...-..+....   .  +.++.++.+.....                    .++...+|+.- -.  
T Consensus         8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g-tP--   84 (112)
T PF13098_consen    8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG-TP--   84 (112)
T ss_dssp             EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S-SS--
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc-cC--
Confidence            367888999999998877776421   1  22344444433222                    34667777743 23  


Q ss_pred             eEEEEECCce
Q 031708          125 RFLFVEGPGL  134 (154)
Q Consensus       125 Sivlid~~G~  134 (154)
                      +++++|.+|+
T Consensus        85 t~~~~d~~G~   94 (112)
T PF13098_consen   85 TIVFLDKDGK   94 (112)
T ss_dssp             EEEECTTTSC
T ss_pred             EEEEEcCCCC
Confidence            7888887777

...

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=93.47  E-value=0.45  Score=32.23  Aligned_cols=61  Identities=13%  Similarity=0.100  Sum_probs=44.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHH----HcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCc
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIR----ADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPG  133 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r----~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G  133 (154)
                      -.+.||..+|+.|......+.+    .+..+++.|+.+.......+.+.+|+..  + -++++++.++
T Consensus        16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~--~-P~~~~~~~~~   80 (102)
T TIGR01126        16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG--F-PTIKFFPKGK   80 (102)
T ss_pred             EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc--C-CEEEEecCCC
Confidence            3788999999999986554433    3223379999888877788888999843  3 4787887655

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=93.09  E-value=0.31  Score=41.46  Aligned_cols=59  Identities=10%  Similarity=0.025  Sum_probs=39.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcE--EEEEcCCccc---------HhHHHhcCCChhhccceEEEEECC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKI--KFCCLQSQAA---------EPYLRLCGLDREDVLRRFLFVEGP  132 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~--~F~~iQS~~g---------~~lL~~~Gl~~e~~~~Sivlid~~  132 (154)
                      .++||.|+|++|+..+--|+....+..|  ..+++.+..-         ..+.+++|+..  . =++++++.+
T Consensus       154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~--~-Pal~Lv~~~  223 (256)
T TIGR02739       154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY--F-PALYLVNPK  223 (256)
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCcc--C-ceEEEEECC
Confidence            7999999999999999999776654444  5555554311         22456777754  2 367777764

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PTZ00051 thioredoxin; Provisional

Probab=92.95  E-value=0.53  Score=32.18  Aligned_cols=60  Identities=15%  Similarity=0.188  Sum_probs=44.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      .+.||-.+|+-|......+.+...+ ..+.|+.+.......+.+++++..  + =++++..+ |+
T Consensus        22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~-g~   82 (98)
T PTZ00051         22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITS--M-PTFKVFKN-GS   82 (98)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCce--e-eEEEEEeC-Ce
Confidence            5789999999999998887665433 358888888777778889999842  2 25666653 44

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=92.15  E-value=0.54  Score=32.66  Aligned_cols=59  Identities=17%  Similarity=0.206  Sum_probs=43.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGP  132 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~  132 (154)
                      .+.||-.+|+.|......+.+.-.  .+.+.|+.+.-.....+.+.+|+..  . =+++++.++
T Consensus        23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~--~-Pt~~~~~~g   83 (104)
T cd03004          23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRA--Y-PTIRLYPGN   83 (104)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCc--c-cEEEEEcCC
Confidence            577999999999998877755432  3568888888777778888898843  2 367777653

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=92.06  E-value=1.4  Score=30.52  Aligned_cols=62  Identities=10%  Similarity=0.069  Sum_probs=43.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH  136 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y  136 (154)
                      .++||...|+.|......+...-  ..+++.|..+.-....++..++|+..  . -+++++++ |+..
T Consensus        17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~--v-Pt~~i~~~-g~~v   80 (97)
T cd02949          17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMG--T-PTVQFFKD-KELV   80 (97)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCee--c-cEEEEEEC-CeEE
Confidence            57788999999999988885522  23568888777666667788888842  3 36777764 5544

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=91.73  E-value=0.77  Score=30.34  Aligned_cols=60  Identities=12%  Similarity=0.060  Sum_probs=45.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc----CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECC
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGP  132 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D----r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~  132 (154)
                      -.+.||...|+.|......+.+..    +...+.|..+.-.....+.+++|+..  . =++++++++
T Consensus        18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~--~-Pt~~~~~~~   81 (101)
T cd02961          18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG--Y-PTIKLFPNG   81 (101)
T ss_pred             EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC--C-CEEEEEcCC
Confidence            467788888999999888765532    24789999998776678889999853  2 378888765

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>TIGR01068 thioredoxin thioredoxin

Probab=91.49  E-value=1.3  Score=29.66  Aligned_cols=58  Identities=16%  Similarity=0.196  Sum_probs=42.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHH--cCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRA--DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~--Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .+.||-.+|+.|......+.+.  +..+++.|.-+.......+.+++|+..  . =+++++.+
T Consensus        18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-P~~~~~~~   77 (101)
T TIGR01068        18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRS--I-PTLLLFKN   77 (101)
T ss_pred             EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCc--C-CEEEEEeC
Confidence            5778999999999988777554  334568888887666677888999863  2 36777754

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=91.27  E-value=0.73  Score=29.63  Aligned_cols=48  Identities=15%  Similarity=0.121  Sum_probs=35.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLD  118 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~  118 (154)
                      .++|+=-.|+.|.....++.+... .+.+.|.-+.-...+++.+.+|+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~   51 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVM   51 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCc
Confidence            578889999999999999977633 235777666555556677888874

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR02740 TraF-like TraF-like protein

Probab=90.73  E-value=0.98  Score=38.23  Aligned_cols=62  Identities=8%  Similarity=0.187  Sum_probs=41.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCC--cEEEEEcCCcc---------cHhHHHhcCCChhhccceEEEEEC-CceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYR--KIKFCCLQSQA---------AEPYLRLCGLDREDVLRRFLFVEG-PGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~--r~~F~~iQS~~---------g~~lL~~~Gl~~e~~~~Sivlid~-~G~~  135 (154)
                      .+.||-++|+.|...+--|.+.-.+.  .+.++++.+..         ...+.+.+|+..  + =++++++. +|.+
T Consensus       170 Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~--v-Ptl~Lv~~~~~~v  243 (271)
T TIGR02740       170 LFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT--V-PAVFLADPDPNQF  243 (271)
T ss_pred             EEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCc--C-CeEEEEECCCCEE
Confidence            67799999999999998887655443  45556655421         123567888743  3 47888886 4544

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=90.66  E-value=1.6  Score=28.44  Aligned_cols=70  Identities=10%  Similarity=0.015  Sum_probs=45.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc--ccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ--AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT  147 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~--~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr  147 (154)
                      .+||.=-.|+.|....+++.+++-  .+.+..+...  ..+++.+..|.... +  =.++++  |+...|.+.+..+.+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~~i--~~~~i~i~~~~~~~~~~~~~~~~~~~-v--P~v~i~--g~~igg~~~~~~~~~   73 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKKGV--DYEEIDVDGDPALREEMINRSGGRRT-V--PQIFIG--DVHIGGCDDLYALER   73 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCC--cEEEEECCCCHHHHHHHHHHhCCCCc-c--CEEEEC--CEEEeChHHHHHHHh
Confidence            456666789999999999988753  6778888653  22333344443211 2  134554  677899998887765

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=90.65  E-value=0.93  Score=29.83  Aligned_cols=64  Identities=8%  Similarity=0.071  Sum_probs=44.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEeh
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQAS  139 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gS  139 (154)
                      .+||+--+|+.|......+.+.-  .+..+.+..+.-....++.+.+|+..- .  ++++ ++ +..+.|.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~v-P--t~~~-~g-~~~~~G~   68 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAV-P--AIVI-NG-DVEFIGA   68 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccC-C--EEEE-CC-EEEEecC
Confidence            57899999999999999987642  234577777766667778889987642 2  5554 43 2244553

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=90.44  E-value=2.1  Score=27.49  Aligned_cols=58  Identities=19%  Similarity=0.285  Sum_probs=42.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .++||-..|+.|......+.+.-. .+.+.|..+.-.....+.+.+|+.. -+  ++++..+
T Consensus        14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~-~P--~~~~~~~   72 (93)
T cd02947          14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRS-IP--TFLFFKN   72 (93)
T ss_pred             EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCccc-cc--EEEEEEC
Confidence            678899999999998888866443 3678888776666667888888854 23  6666654

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=90.40  E-value=1.8  Score=30.69  Aligned_cols=63  Identities=14%  Similarity=0.119  Sum_probs=39.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc---------------------ccHhHHHhcCCChhhccceEEE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ---------------------AAEPYLRLCGLDREDVLRRFLF  128 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~---------------------~g~~lL~~~Gl~~e~~~~Sivl  128 (154)
                      -.+.||-+.|+.|......+.+.-.+-.+..+...+.                     ...++.+.+++..  . -++++
T Consensus        23 ~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~--~-P~~~v   99 (123)
T cd03011          23 VLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSV--T-PAIVI   99 (123)
T ss_pred             EEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCc--c-cEEEE
Confidence            3677899999999999888876554434433333321                     1124556666643  2 36778


Q ss_pred             EECCceE
Q 031708          129 VEGPGLY  135 (154)
Q Consensus       129 id~~G~~  135 (154)
                      ++.+|..
T Consensus       100 id~~gi~  106 (123)
T cd03011         100 VDPGGIV  106 (123)
T ss_pred             EcCCCeE
Confidence            8877743

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=90.36  E-value=1.4  Score=29.68  Aligned_cols=59  Identities=17%  Similarity=0.295  Sum_probs=46.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      -.+.||-..|+-|......+.+...  .+.+.|..+.-.....+.+++++..  + =+++++.+
T Consensus        20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~   80 (103)
T PF00085_consen   20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKS--V-PTIIFFKN   80 (103)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSS--S-SEEEEEET
T ss_pred             EEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCC--C-CEEEEEEC
Confidence            3678999999999999987755432  3379999998888889999999854  2 37777765

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=90.34  E-value=3  Score=25.96  Aligned_cols=67  Identities=15%  Similarity=0.172  Sum_probs=42.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc-cHhHHH-hcCCChhhccceEEEEECCceEEEehHHHHHH
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-AEPYLR-LCGLDREDVLRRFLFVEGPGLYHQASTGGGWG  145 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~-g~~lL~-~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~i  145 (154)
                      .++|.-..|+.|.....++.++.  -.+...++.... ..+.+. ..|.  ..+  =.+++  +|+...|++.+..+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~--i~~~~~di~~~~~~~~~l~~~~~~--~~~--P~~~~--~~~~igg~~~~~~~   70 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG--IEFEEIDILEDGELREELKELSGW--PTV--PQIFI--NGEFIGGYDDLKAL   70 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC--CcEEEEECCCCHHHHHHHHHHhCC--CCc--CEEEE--CCEEEecHHHHHHh
Confidence            56778899999999999998886  467778886543 122222 2232  111  12333  47778888877654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=90.24  E-value=1.1  Score=29.70  Aligned_cols=70  Identities=16%  Similarity=0.123  Sum_probs=44.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCccc-H----hHHHhcCCChhhccceEEEEECCceEEEehHHHHHH
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-E----PYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWG  145 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g-~----~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~i  145 (154)
                      .++|+--.|+.|....+++.++.-  .+.+..++.... .    .+-+..|..  .+  -.++++  |....|.+-+..+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~g~~--~~--P~v~~~--g~~igg~~~~~~~   73 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV--KPAVVELDQHEDGSEIQDYLQELTGQR--TV--PNVFIG--GKFIGGCDDLMAL   73 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC--CcEEEEEeCCCChHHHHHHHHHHhCCC--CC--CeEEEC--CEEEcCHHHHHHH
Confidence            567777899999999999999876  566667655332 1    122223321  11  134443  6778888888777


Q ss_pred             HHH
Q 031708          146 ITV  148 (154)
Q Consensus       146 lr~  148 (154)
                      .+.
T Consensus        74 ~~~   76 (82)
T cd03419          74 HKS   76 (82)
T ss_pred             HHc
Confidence            653

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=90.20  E-value=0.26  Score=41.78  Aligned_cols=60  Identities=7%  Similarity=0.030  Sum_probs=39.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEE--EEcCCccc---------HhHHHhcCCChhhccceEEEEECC
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKF--CCLQSQAA---------EPYLRLCGLDREDVLRRFLFVEGP  132 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F--~~iQS~~g---------~~lL~~~Gl~~e~~~~Sivlid~~  132 (154)
                      -.+.||.|+|++|+..+--|+....+..|..  +++.+...         ....+..|+..  . =++++++.+
T Consensus       146 GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~--~-PAl~Lv~~~  216 (248)
T PRK13703        146 GLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY--F-PALMLVDPK  216 (248)
T ss_pred             eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcc--c-ceEEEEECC
Confidence            4799999999999999999988776555555  44443111         11235667643  3 367777654

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=89.92  E-value=1.9  Score=34.29  Aligned_cols=75  Identities=12%  Similarity=0.065  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEE---ehHHHHH
Q 031708           68 LQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQ---ASTGGGW  144 (154)
Q Consensus        68 ~~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~---gSdAvl~  144 (154)
                      ..++++++|-.|+=|+.|++.++..+    |..-.........+-+++||+.+-  .|-|=..-+|.+..   -.+|+.+
T Consensus        25 ~~~~~vyksPnCGCC~~w~~~mk~~G----f~Vk~~~~~d~~alK~~~gIp~e~--~SCHT~VI~Gy~vEGHVPa~aI~~   98 (149)
T COG3019          25 ATEMVVYKSPNCGCCDEWAQHMKANG----FEVKVVETDDFLALKRRLGIPYEM--QSCHTAVINGYYVEGHVPAEAIAR   98 (149)
T ss_pred             eeeEEEEeCCCCccHHHHHHHHHhCC----cEEEEeecCcHHHHHHhcCCChhh--ccccEEEEcCEEEeccCCHHHHHH
Confidence            35689999999999999999998544    333333333355655679998763  34433322344333   3677777


Q ss_pred             HHHH
Q 031708          145 GITV  148 (154)
Q Consensus       145 ilr~  148 (154)
                      ++..
T Consensus        99 ll~~  102 (149)
T COG3019          99 LLAE  102 (149)
T ss_pred             HHhC
Confidence            6654

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=89.37  E-value=3.5  Score=27.96  Aligned_cols=61  Identities=8%  Similarity=0.030  Sum_probs=45.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||-.+|+-|......+.+..  -.+.+.|..+.-.....+.+++++..  + =++++++ +|+.
T Consensus        16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~--~-Pt~~~~~-~g~~   78 (96)
T cd02956          16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQA--L-PTVYLFA-AGQP   78 (96)
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCC--C-CEEEEEe-CCEE
Confidence            57799999999999988775533  23568888888777888888999853  2 3677776 4553

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=89.30  E-value=3.3  Score=29.56  Aligned_cols=70  Identities=11%  Similarity=0.100  Sum_probs=43.6

Q ss_pred             CeEEEEc------CCCcchHHHHHHHHHHcCCCcEEEEEcC-CcccHhHHHh-cCCChhhccceEEEEECCceEEEehHH
Q 031708           70 PGVVIYD------GVCHLCHGGVKWVIRADKYRKIKFCCLQ-SQAAEPYLRL-CGLDREDVLRRFLFVEGPGLYHQASTG  141 (154)
Q Consensus        70 ~~vVfYD------G~C~LC~~~V~fl~r~Dr~~r~~F~~iQ-S~~g~~lL~~-~Gl~~e~~~~Sivlid~~G~~y~gSdA  141 (154)
                      ..+|+|=      -.|++|.+..+++..+.-  .+...++. .+..++.+.. .|..  .+  =.++++  |++..|.|.
T Consensus        12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i--~~~~~di~~~~~~~~~l~~~tg~~--tv--P~vfi~--g~~iGG~dd   83 (97)
T TIGR00365        12 NPVVLYMKGTPQFPQCGFSARAVQILKACGV--PFAYVNVLEDPEIRQGIKEYSNWP--TI--PQLYVK--GEFVGGCDI   83 (97)
T ss_pred             CCEEEEEccCCCCCCCchHHHHHHHHHHcCC--CEEEEECCCCHHHHHHHHHHhCCC--CC--CEEEEC--CEEEeChHH
Confidence            4566663      369999999999988754  57777773 3333333332 2321  11  134664  777889998


Q ss_pred             HHHHHH
Q 031708          142 GGWGIT  147 (154)
Q Consensus       142 vl~ilr  147 (154)
                      +..+.+
T Consensus        84 l~~l~~   89 (97)
T TIGR00365        84 IMEMYQ   89 (97)
T ss_pred             HHHHHH
Confidence            877664

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=89.01  E-value=0.67  Score=38.27  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=27.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCCC-cEEEE--EcC
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKYR-KIKFC--CLQ  104 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~-r~~F~--~iQ  104 (154)
                      ...++|.|=+|++|++.-..+.+.+..+ +++|.  |+.
T Consensus       109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~  147 (232)
T PRK10877        109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQ  147 (232)
T ss_pred             EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCC
Confidence            3478999999999999999998876544 45553  553

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=88.98  E-value=2.4  Score=29.59  Aligned_cols=47  Identities=11%  Similarity=0.230  Sum_probs=30.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEc---CCcccHhHHHhcCC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCL---QSQAAEPYLRLCGL  117 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~i---QS~~g~~lL~~~Gl  117 (154)
                      .+.||-.+|+.|......+.+...  .+.+.++.+   ..+...+.++.+++
T Consensus        25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~   76 (114)
T cd02967          25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGL   76 (114)
T ss_pred             EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCC
Confidence            467888899999999888876442  244655555   22334445566665

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=88.90  E-value=2  Score=29.27  Aligned_cols=58  Identities=14%  Similarity=0.148  Sum_probs=38.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHHH----cCCCcEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRA----DKYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~----Dr~~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .+.||-.+|+.|......+.+.    ...+.+.|+.+.-..  ...+.+++|+.. -.  ++++..+
T Consensus        21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~-~P--t~~~~~~   84 (104)
T cd02997          21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG-FP--TFKYFEN   84 (104)
T ss_pred             EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc-cc--EEEEEeC
Confidence            5889999999999987555332    223567777655444  677888888843 23  5666654

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=88.80  E-value=2.1  Score=30.74  Aligned_cols=34  Identities=6%  Similarity=0.227  Sum_probs=27.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ  104 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQ  104 (154)
                      .+.||-..|+-|......+.+...+..+.++.+.
T Consensus        29 vv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~   62 (127)
T cd03010          29 LLNVWASWCAPCREEHPVLMALARQGRVPIYGIN   62 (127)
T ss_pred             EEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence            5779999999999999999777655557666665

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=88.63  E-value=2.1  Score=30.87  Aligned_cols=63  Identities=10%  Similarity=0.099  Sum_probs=38.8

Q ss_pred             eEEEEcCCCcchHHHHHHHH---H--HcCCCcEEEEEcC--Cc-----------ccHhHHHhcCCChhhccceEEEEECC
Q 031708           71 GVVIYDGVCHLCHGGVKWVI---R--ADKYRKIKFCCLQ--SQ-----------AAEPYLRLCGLDREDVLRRFLFVEGP  132 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~---r--~Dr~~r~~F~~iQ--S~-----------~g~~lL~~~Gl~~e~~~~Sivlid~~  132 (154)
                      .+.|+-.+|+.|......+.   .  ...++.+.++-+.  +.           ...++...+++..  + =++++++++
T Consensus        18 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~--~-Pt~~~~~~~   94 (125)
T cd02951          18 LLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF--T-PTVIFLDPE   94 (125)
T ss_pred             EEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc--c-cEEEEEcCC
Confidence            57789999999999876442   1  1112356565543  22           1246667888743  3 378888876


Q ss_pred             -ceEE
Q 031708          133 -GLYH  136 (154)
Q Consensus       133 -G~~y  136 (154)
                       |+..
T Consensus        95 gg~~~   99 (125)
T cd02951          95 GGKEI   99 (125)
T ss_pred             CCcee
Confidence             5543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=88.60  E-value=4.2  Score=26.17  Aligned_cols=66  Identities=9%  Similarity=0.074  Sum_probs=39.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHhcCCChhhccceEEEEECCceEEEehHH
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTG  141 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdA  141 (154)
                      .+||+-..|+.|.....++.++.-  .+.++++... ...+.+...+.....+ =++ +++ +|....+...
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~~--~~~~idi~~~~~~~~~~~~~~~~~~~v-P~i-~~~-~g~~l~~~~~   68 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLGA--AYEWVDIEEDEGAADRVVSVNNGNMTV-PTV-KFA-DGSFLTNPSA   68 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcCC--ceEEEeCcCCHhHHHHHHHHhCCCcee-CEE-EEC-CCeEecCCCH
Confidence            579999999999999999977753  5778887543 2222333322222233 233 333 4665655554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=88.59  E-value=0.6  Score=39.00  Aligned_cols=34  Identities=12%  Similarity=0.028  Sum_probs=25.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCC--cEEEEEc
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYR--KIKFCCL  103 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~--r~~F~~i  103 (154)
                      ..+||+|=+|++|++.-+.+......+  ++++.++
T Consensus       120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~  155 (251)
T PRK11657        120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV  155 (251)
T ss_pred             EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence            378999999999999988877654445  4566654

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=88.37  E-value=1.9  Score=29.87  Aligned_cols=61  Identities=13%  Similarity=0.175  Sum_probs=40.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEECCc
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPG  133 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~~G  133 (154)
                      -.+.||-.+|+.|.....-+.+..  ..+.+.|+.+.-..  ...+...+++..  . =+++++++++
T Consensus        21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~--~-Pt~~~~~~~~   85 (109)
T cd03002          21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG--F-PTLKVFRPPK   85 (109)
T ss_pred             EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc--C-CEEEEEeCCC
Confidence            467899999999998766554432  23556666554443  667788888753  3 3777777654

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=88.01  E-value=6.8  Score=26.97  Aligned_cols=76  Identities=8%  Similarity=-0.146  Sum_probs=43.7

Q ss_pred             CCCCCCCCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccH-hHHHhcCCChhhccceEEEEECCceEEEehHH
Q 031708           63 MEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAE-PYLRLCGLDREDVLRRFLFVEGPGLYHQASTG  141 (154)
Q Consensus        63 ~~p~~~~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~-~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdA  141 (154)
                      ..|+.....+|++-..|+.|.+...++..+.-  .+.++.+...... .+.+..+. . .+   =++++++|.....|.|
T Consensus        11 ~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl--~~~~~~v~~~~~~~~~~~~np~-~-~v---PvL~~~~g~~l~eS~a   83 (89)
T cd03055          11 EPPPVPGIIRLYSMRFCPYAQRARLVLAAKNI--PHEVININLKDKPDWFLEKNPQ-G-KV---PALEIDEGKVVYESLI   83 (89)
T ss_pred             CCCCCCCcEEEEeCCCCchHHHHHHHHHHcCC--CCeEEEeCCCCCcHHHHhhCCC-C-Cc---CEEEECCCCEEECHHH
Confidence            44555567888999999999987777766543  3555555432222 22222111 1 11   1233344677889988


Q ss_pred             HHHH
Q 031708          142 GGWG  145 (154)
Q Consensus       142 vl~i  145 (154)
                      ++.-
T Consensus        84 I~~y   87 (89)
T cd03055          84 ICEY   87 (89)
T ss_pred             HHHh
Confidence            8753

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=87.80  E-value=5.1  Score=26.10  Aligned_cols=65  Identities=11%  Similarity=0.051  Sum_probs=38.5

Q ss_pred             EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCccc-HhHHHhcCCChhhccceE-EEEECCceEEEehHHHHH
Q 031708           72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-EPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGW  144 (154)
Q Consensus        72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g-~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~  144 (154)
                      ++++=..|++|.+....+..++-  .+.++.+..... .++++.   .+.   ..+ ++++++|.....|.|++.
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl--~~e~~~v~~~~~~~~~~~~---np~---~~vP~L~~~~g~~l~eS~aI~~   68 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGI--TVELREVELKNKPAEMLAA---SPK---GTVPVLVLGNGTVIEESLDIMR   68 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCC--CcEEEEeCCCCCCHHHHHH---CCC---CCCCEEEECCCcEEecHHHHHH
Confidence            56777889999998777776654  355555443222 233322   222   122 234455777889988765

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=87.60  E-value=4.1  Score=30.86  Aligned_cols=63  Identities=16%  Similarity=0.254  Sum_probs=42.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CC--cEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YR--KIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH  136 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~--r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y  136 (154)
                      .+.||=.+|+-|......+.+...  .+  +|.++.+.......+.+.|++..  + =++++++.+|+..
T Consensus        24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~--i-Pt~v~~~~~G~~v   90 (142)
T cd02950          24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG--I-PHFVFLDREGNEE   90 (142)
T ss_pred             EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC--C-CEEEEECCCCCEE
Confidence            566888899999999888766432  23  45555666544556788998853  3 4788887666544

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=87.56  E-value=2.2  Score=28.96  Aligned_cols=60  Identities=10%  Similarity=0.121  Sum_probs=42.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc----CCCcEEEEEcCCcc-cHhHHHhcCCChhhccceEEEEECC
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD----KYRKIKFCCLQSQA-AEPYLRLCGLDREDVLRRFLFVEGP  132 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D----r~~r~~F~~iQS~~-g~~lL~~~Gl~~e~~~~Sivlid~~  132 (154)
                      -.+.||...|+.|......+....    ..+.+.|..+.... ...+.+++++..  . =++++++.+
T Consensus        21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~--~-P~~~~~~~~   85 (105)
T cd02998          21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSG--F-PTLKFFPKG   85 (105)
T ss_pred             EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCC--c-CEEEEEeCC
Confidence            367899999999987766654422    23579998887766 667788888853  2 367777654

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=87.31  E-value=4.3  Score=26.72  Aligned_cols=68  Identities=9%  Similarity=-0.104  Sum_probs=44.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWG  145 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~i  145 (154)
                      +.+||.=-.|+.|....+++.+++-  .+.+.++....  .+++.+..|-.  .+  =.+++  +|++..|.+.+..+
T Consensus         2 ~v~ly~~~~C~~C~ka~~~L~~~gi--~~~~~di~~~~~~~~el~~~~g~~--~v--P~v~i--~~~~iGg~~~~~~~   71 (73)
T cd03027           2 RVTIYSRLGCEDCTAVRLFLREKGL--PYVEINIDIFPERKAELEERTGSS--VV--PQIFF--NEKLVGGLTDLKSL   71 (73)
T ss_pred             EEEEEecCCChhHHHHHHHHHHCCC--ceEEEECCCCHHHHHHHHHHhCCC--Cc--CEEEE--CCEEEeCHHHHHhh
Confidence            4567777789999999999998764  68888886532  33444444431  12  13344  46778888887654

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=87.01  E-value=5.7  Score=27.65  Aligned_cols=70  Identities=13%  Similarity=0.054  Sum_probs=43.2

Q ss_pred             CeEEEEc-C-----CCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHh-cCCChhhccceEEEEECCceEEEehHH
Q 031708           70 PGVVIYD-G-----VCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRL-CGLDREDVLRRFLFVEGPGLYHQASTG  141 (154)
Q Consensus        70 ~~vVfYD-G-----~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~-~Gl~~e~~~~Sivlid~~G~~y~gSdA  141 (154)
                      .++|+|= |     .|++|.+..+++..+.  -.+...++... ..++.+.. .|-.  .+  =.++++  |+++.|.+-
T Consensus         8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--i~y~~idv~~~~~~~~~l~~~~g~~--tv--P~vfi~--g~~iGG~~~   79 (90)
T cd03028           8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG--VDFGTFDILEDEEVRQGLKEYSNWP--TF--PQLYVN--GELVGGCDI   79 (90)
T ss_pred             CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--CCeEEEEcCCCHHHHHHHHHHhCCC--CC--CEEEEC--CEEEeCHHH
Confidence            4566663 3     8999999999998775  36777777432 22233333 2321  22  134664  778889888


Q ss_pred             HHHHHH
Q 031708          142 GGWGIT  147 (154)
Q Consensus       142 vl~ilr  147 (154)
                      +..+.+
T Consensus        80 l~~l~~   85 (90)
T cd03028          80 VKEMHE   85 (90)
T ss_pred             HHHHHH
Confidence            777544

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=86.97  E-value=8.8  Score=29.16  Aligned_cols=35  Identities=11%  Similarity=0.104  Sum_probs=24.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQS  105 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS  105 (154)
                      .+.||.-.|+.|.....-+.++-   .+.++.|+.+..
T Consensus        29 ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~   66 (171)
T cd02969          29 VVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINS   66 (171)
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEec
Confidence            57789999999998666554433   234688887754

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=86.37  E-value=5.7  Score=26.80  Aligned_cols=61  Identities=11%  Similarity=0.194  Sum_probs=45.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||=.+|+-|......+.+...  ...+.|..+......++.+++|+..  + =+++++.+ |+.
T Consensus        18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~--~-Pt~~~~~~-g~~   80 (97)
T cd02984          18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITA--V-PTFVFFRN-GTI   80 (97)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCcc--c-cEEEEEEC-CEE
Confidence            577999999999998887766443  3588999888776777888899854  3 36777764 553

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=86.35  E-value=7.1  Score=25.51  Aligned_cols=69  Identities=12%  Similarity=0.057  Sum_probs=42.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc-cHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGI  146 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~-g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~il  146 (154)
                      +.+||-=-.|++|.+..+++.+++  =.+...++.... ++++....|..  .+  =.++++  |.+..|++.+...+
T Consensus         2 ~v~lys~~~Cp~C~~ak~~L~~~~--i~~~~~~v~~~~~~~~~~~~~g~~--~v--P~ifi~--g~~igg~~~l~~~l   71 (72)
T cd03029           2 SVSLFTKPGCPFCARAKAALQENG--ISYEEIPLGKDITGRSLRAVTGAM--TV--PQVFID--GELIGGSDDLEKYF   71 (72)
T ss_pred             eEEEEECCCCHHHHHHHHHHHHcC--CCcEEEECCCChhHHHHHHHhCCC--Cc--CeEEEC--CEEEeCHHHHHHHh
Confidence            356666678999999999998764  357777776543 22222222321  12  123553  66788888776654

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=86.15  E-value=3.6  Score=32.00  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=26.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcE--EEEEcCC
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKI--KFCCLQS  105 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~--~F~~iQS  105 (154)
                      ..+.||-.+|+.|..++-.+.+.-++..+  ..+.+..
T Consensus        53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~   90 (153)
T TIGR02738        53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDG   90 (153)
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence            48889999999999999988776544334  4444543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=86.08  E-value=1.9  Score=29.85  Aligned_cols=58  Identities=16%  Similarity=0.146  Sum_probs=42.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .+.||-.+|+-|......+.+...  ++.+.|..+.-.....+.+++++..  . =++++...
T Consensus        22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~   81 (101)
T cd03003          22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNS--Y-PSLYVFPS   81 (101)
T ss_pred             EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCc--c-CEEEEEcC
Confidence            577999999999998877655432  3568888887776778888888842  3 36766643

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=85.86  E-value=1.6  Score=29.78  Aligned_cols=58  Identities=12%  Similarity=0.085  Sum_probs=41.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .+.||-..|+.|......+.+..  -.+.+.|..+.......+.+++|+.. -.  ++++++.
T Consensus        22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~-~P--~~~~~~~   81 (103)
T cd03001          22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRG-FP--TIKVFGA   81 (103)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCc-cC--EEEEECC
Confidence            67788889999999876664432  23578888887777778889999843 33  6666654

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PRK10638 glutaredoxin 3; Provisional

Probab=85.76  E-value=5.2  Score=27.14  Aligned_cols=71  Identities=11%  Similarity=0.076  Sum_probs=45.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc-c-HhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-A-EPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT  147 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~-g-~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr  147 (154)
                      +.+||-=-.|++|.+..+++.++.-  .+...++.... . +++.+..|..  .+  =.+++  +|.+..|.+.+..+..
T Consensus         3 ~v~ly~~~~Cp~C~~a~~~L~~~gi--~y~~~dv~~~~~~~~~l~~~~g~~--~v--P~i~~--~g~~igG~~~~~~~~~   74 (83)
T PRK10638          3 NVEIYTKATCPFCHRAKALLNSKGV--SFQEIPIDGDAAKREEMIKRSGRT--TV--PQIFI--DAQHIGGCDDLYALDA   74 (83)
T ss_pred             cEEEEECCCChhHHHHHHHHHHcCC--CcEEEECCCCHHHHHHHHHHhCCC--Cc--CEEEE--CCEEEeCHHHHHHHHH
Confidence            4567777999999999999998754  56667774332 2 2333333432  12  12344  4788899998877654


Q ss_pred             H
Q 031708          148 V  148 (154)
Q Consensus       148 ~  148 (154)
                      .
T Consensus        75 ~   75 (83)
T PRK10638         75 R   75 (83)
T ss_pred             c
Confidence            3

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=85.71  E-value=1.2  Score=32.19  Aligned_cols=35  Identities=14%  Similarity=0.131  Sum_probs=25.4

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHc-CCC--cEEEEEc
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRAD-KYR--KIKFCCL  103 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~D-r~~--r~~F~~i  103 (154)
                      ...++|||=.|+.|...-..+.+.- ..+  ++.|.++
T Consensus         7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~   44 (154)
T cd03023           7 VTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF   44 (154)
T ss_pred             EEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence            4578999999999999988876632 223  5666555

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=85.60  E-value=4.4  Score=30.39  Aligned_cols=63  Identities=8%  Similarity=0.219  Sum_probs=39.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCcc----------------------cHhHHHhcCCChhhccce
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQA----------------------AEPYLRLCGLDREDVLRR  125 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~----------------------g~~lL~~~Gl~~e~~~~S  125 (154)
                      .+.||...|+.|......+.+.-   .+..+.++.+....                      ..++.+.+|+..  . -+
T Consensus        65 ~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~-P~  141 (173)
T PRK03147         65 FLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP--L-PT  141 (173)
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC--c-Ce
Confidence            57799999999999876664433   23346666664221                      124456666632  2 36


Q ss_pred             EEEEECCceEE
Q 031708          126 FLFVEGPGLYH  136 (154)
Q Consensus       126 ivlid~~G~~y  136 (154)
                      +++++.+|++.
T Consensus       142 ~~lid~~g~i~  152 (173)
T PRK03147        142 TFLIDKDGKVV  152 (173)
T ss_pred             EEEECCCCcEE
Confidence            77888888865

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=85.58  E-value=1.3  Score=34.81  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=25.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL  103 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~i  103 (154)
                      ...++|+|=.|++|...-..+.....+=++++.++
T Consensus        79 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~  113 (197)
T cd03020          79 RVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV  113 (197)
T ss_pred             EEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence            35789999999999999999876333334555533

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=85.28  E-value=3.3  Score=33.54  Aligned_cols=64  Identities=11%  Similarity=0.037  Sum_probs=41.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-------------ccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-------------AAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-------------~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .++||=.+|+.|..++-.+.+.-.+..+.+..+.-+             ....+.+.||.-...+ =+.++||.+|.+
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~i-PttfLId~~G~i  149 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVAT-PTTFLVNVNTLE  149 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCC-CeEEEEeCCCcE
Confidence            888999999999999888877655444666555311             1223445666411122 367788888865

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=85.23  E-value=1.6  Score=28.65  Aligned_cols=33  Identities=12%  Similarity=0.145  Sum_probs=24.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHH--cCCC--cEEEEEc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRA--DKYR--KIKFCCL  103 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~--Dr~~--r~~F~~i  103 (154)
                      .++|||=.|+.|...-..+.+.  ...+  ++.+.++
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~   37 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF   37 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence            3689999999999999999886  2233  4555554

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=85.19  E-value=6.1  Score=28.61  Aligned_cols=58  Identities=16%  Similarity=0.232  Sum_probs=41.0

Q ss_pred             eEEEEc-CCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYD-GVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYD-G~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .+|+|. -+|+.|.....++.+... .+.+.|.-+.-....++.+.||+..-   =++++.++
T Consensus        25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~v---Pt~~i~~~   84 (113)
T cd02975          25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERV---PTTIFLQD   84 (113)
T ss_pred             EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcC---CEEEEEeC
Confidence            566666 499999998888866542 35577776666667888999998543   36777654

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=85.18  E-value=3  Score=28.25  Aligned_cols=58  Identities=12%  Similarity=0.090  Sum_probs=39.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC----CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK----YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr----~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      -.+.||..+|+.|.....-+.+...    ..++.|..+..... ++...+++ .. . =++++...
T Consensus        21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~-~~-~-Pt~~~~~~   82 (104)
T cd02995          21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV-DG-F-PTILFFPA   82 (104)
T ss_pred             EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC-CC-C-CEEEEEcC
Confidence            3577999999999998877755442    24688888876543 45566676 33 3 36766654

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=85.03  E-value=2  Score=30.33  Aligned_cols=64  Identities=14%  Similarity=0.130  Sum_probs=43.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEe
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQA  138 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~g  138 (154)
                      ...+|+...|+.|...++++.+.-.. +++.|.-+.-....++.+.||+..  + =+++ +++ ...+.|
T Consensus        15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~--v-Pt~v-idG-~~~~~G   79 (89)
T cd03026          15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMS--V-PAIF-LNG-ELFGFG   79 (89)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCcc--C-CEEE-ECC-EEEEeC
Confidence            36899999999999999988776543 357776666555667788999863  2 3564 442 334444

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PRK09381 trxA thioredoxin; Provisional

Probab=84.82  E-value=6.9  Score=27.28  Aligned_cols=63  Identities=13%  Similarity=0.045  Sum_probs=42.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH  136 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y  136 (154)
                      -.+.||-.+|+-|......+.+.-  ..+++.|..+.-.....+..++++.. -+  +++++. +|+..
T Consensus        24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~P--t~~~~~-~G~~~   88 (109)
T PRK09381         24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG-IP--TLLLFK-NGEVA   88 (109)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCc-CC--EEEEEe-CCeEE
Confidence            367789999999999987775422  23557777776655666777888743 23  666665 35533

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=84.66  E-value=6.4  Score=27.56  Aligned_cols=34  Identities=9%  Similarity=0.227  Sum_probs=23.0

Q ss_pred             eEEEEcC-CCcchHHHHHHHHHHc---CCCcEEEEEcC
Q 031708           71 GVVIYDG-VCHLCHGGVKWVIRAD---KYRKIKFCCLQ  104 (154)
Q Consensus        71 ~vVfYDG-~C~LC~~~V~fl~r~D---r~~r~~F~~iQ  104 (154)
                      .+.||-+ .|+.|.....-+.+.-   ++..+.++.+.
T Consensus        29 vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is   66 (124)
T PF00578_consen   29 VLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIS   66 (124)
T ss_dssp             EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred             EEEEeCccCccccccchhHHHHHhhhhccceEEeeecc
Confidence            5778999 9999999887665532   23345555543

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=84.23  E-value=2.2  Score=29.92  Aligned_cols=58  Identities=9%  Similarity=0.064  Sum_probs=41.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--------CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--------YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--------~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .+.||-.+|+.|......+.+.-.        .+++.|..+.......+.+++|+..  . =++++..+
T Consensus        22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~--~-Ptl~~~~~   87 (108)
T cd02996          22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK--Y-PTLKLFRN   87 (108)
T ss_pred             EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc--C-CEEEEEeC
Confidence            577899999999998877754321        2468898887666678889999853  2 36666643

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=83.81  E-value=9.2  Score=25.75  Aligned_cols=70  Identities=14%  Similarity=0.108  Sum_probs=45.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHH
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGI  146 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~il  146 (154)
                      .+.+||.=-.|++|.+..+++.+++-  .+...++... .+.++.+..|..  .+  =.+++  +|++..|++.+...+
T Consensus         8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi--~y~~idi~~~~~~~~~~~~~g~~--~v--P~i~i--~g~~igG~~~l~~~l   78 (79)
T TIGR02190         8 ESVVVFTKPGCPFCAKAKATLKEKGY--DFEEIPLGNDARGRSLRAVTGAT--TV--PQVFI--GGKLIGGSDELEAYL   78 (79)
T ss_pred             CCEEEEECCCCHhHHHHHHHHHHcCC--CcEEEECCCChHHHHHHHHHCCC--Cc--CeEEE--CCEEEcCHHHHHHHh
Confidence            45788888899999999999987643  5667777543 233333333431  12  12344  477889998877654

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=83.74  E-value=10  Score=25.17  Aligned_cols=69  Identities=9%  Similarity=-0.027  Sum_probs=41.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc--cHhHHHhcCCChhhccceE-EEEEC-CceEEEehHHHHHHH
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRF-LFVEG-PGLYHQASTGGGWGI  146 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Si-vlid~-~G~~y~gSdAvl~il  146 (154)
                      ++|+....|++|.+...++..+.-  .+....+....  ..+.+ ..+  +.   ..+ +++++ +|....+|+|++.-+
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L~~~gi--~y~~~~v~~~~~~~~~~~-~~~--p~---~~vP~l~~~~~~~~l~es~~I~~yL   73 (77)
T cd03041           2 LELYEFEGSPFCRLVREVLTELEL--DVILYPCPKGSPKRDKFL-EKG--GK---VQVPYLVDPNTGVQMFESADIVKYL   73 (77)
T ss_pred             ceEecCCCCchHHHHHHHHHHcCC--cEEEEECCCChHHHHHHH-HhC--CC---CcccEEEeCCCCeEEEcHHHHHHHH
Confidence            456777899999998888877653  45666664221  22332 222  21   122 23443 577788999988765


Q ss_pred             H
Q 031708          147 T  147 (154)
Q Consensus       147 r  147 (154)
                      .
T Consensus        74 ~   74 (77)
T cd03041          74 F   74 (77)
T ss_pred             H
Confidence            4

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=82.04  E-value=7.2  Score=22.12  Aligned_cols=36  Identities=17%  Similarity=0.228  Sum_probs=25.2

Q ss_pred             eEEEEcCCCcchHHHHHHHHHH---cCCCcEEEEEcCCc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRA---DKYRKIKFCCLQSQ  106 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~---Dr~~r~~F~~iQS~  106 (154)
                      .++|+...|+.|......+.+.   ..+=.+..++....
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~   39 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED   39 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC
Confidence            3689999999999999988864   33334455555443

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=82.02  E-value=11  Score=27.41  Aligned_cols=62  Identities=13%  Similarity=0.072  Sum_probs=46.2

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH  136 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y  136 (154)
                      .+.||--+|+-|......+.+..+ ...+.|+-+.......+.+++++..  + =++++..+ |+..
T Consensus        26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~--v-Pt~l~fk~-G~~v   88 (113)
T cd02989          26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKV--L-PTVILFKN-GKTV   88 (113)
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCcc--C-CEEEEEEC-CEEE
Confidence            567899999999988888866443 3468899888888888888998853  2 37777765 5433

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PHA03050 glutaredoxin; Provisional

Probab=82.02  E-value=15  Score=26.97  Aligned_cols=72  Identities=10%  Similarity=0.077  Sum_probs=46.3

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCCC-cEEEEEcCC----cccHhHH-HhcCCChhhccceEEEEECCceEEEehHHH
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKYR-KIKFCCLQS----QAAEPYL-RLCGLDREDVLRRFLFVEGPGLYHQASTGG  142 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~-r~~F~~iQS----~~g~~lL-~~~Gl~~e~~~~Sivlid~~G~~y~gSdAv  142 (154)
                      .+.+||-=..||+|.+.-+++..+.-.+ .+....+..    ...+..+ +..|..  .+  =.+++  +|++..|.|-+
T Consensus        13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~--tV--P~IfI--~g~~iGG~ddl   86 (108)
T PHA03050         13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGR--TV--PRIFF--GKTSIGGYSDL   86 (108)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCC--Cc--CEEEE--CCEEEeChHHH
Confidence            4677888889999999999998876533 577888864    1112223 333432  22  13355  37788888887


Q ss_pred             HHHH
Q 031708          143 GWGI  146 (154)
Q Consensus       143 l~il  146 (154)
                      ..+-
T Consensus        87 ~~l~   90 (108)
T PHA03050         87 LEID   90 (108)
T ss_pred             HHHH
Confidence            7644

>PRK10824 glutaredoxin-4; Provisional

Probab=81.61  E-value=13  Score=27.92  Aligned_cols=70  Identities=11%  Similarity=0.077  Sum_probs=41.4

Q ss_pred             CeEEEEcC-----CCcchHHHHHHHHHHcCCCcEEEEEcCC-cccHhHHHhc-CCChhhccceEEEEECCceEEEehHHH
Q 031708           70 PGVVIYDG-----VCHLCHGGVKWVIRADKYRKIKFCCLQS-QAAEPYLRLC-GLDREDVLRRFLFVEGPGLYHQASTGG  142 (154)
Q Consensus        70 ~~vVfYDG-----~C~LC~~~V~fl~r~Dr~~r~~F~~iQS-~~g~~lL~~~-Gl~~e~~~~Sivlid~~G~~y~gSdAv  142 (154)
                      +.+||-=|     .|++|.+..+.+..+.-  .+....+.. +.-+..|..+ |..  .+  =-+||  +|+...|.|-+
T Consensus        16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i--~~~~idi~~d~~~~~~l~~~sg~~--TV--PQIFI--~G~~IGG~ddl   87 (115)
T PRK10824         16 PILLYMKGSPKLPSCGFSAQAVQALSACGE--RFAYVDILQNPDIRAELPKYANWP--TF--PQLWV--DGELVGGCDIV   87 (115)
T ss_pred             CEEEEECCCCCCCCCchHHHHHHHHHHcCC--CceEEEecCCHHHHHHHHHHhCCC--CC--CeEEE--CCEEEcChHHH
Confidence            44555555     79999999999988753  445556543 2222223332 221  12  12455  47888899888


Q ss_pred             HHHHH
Q 031708          143 GWGIT  147 (154)
Q Consensus       143 l~ilr  147 (154)
                      ..+.+
T Consensus        88 ~~l~~   92 (115)
T PRK10824         88 IEMYQ   92 (115)
T ss_pred             HHHHH
Confidence            77654

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=81.18  E-value=15  Score=25.25  Aligned_cols=73  Identities=12%  Similarity=0.089  Sum_probs=45.5

Q ss_pred             EEEEcCCCcchHHHHHHHHHHcCC---CcEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHH
Q 031708           72 VVIYDGVCHLCHGGVKWVIRADKY---RKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGI  146 (154)
Q Consensus        72 vVfYDG~C~LC~~~V~fl~r~Dr~---~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~il  146 (154)
                      +||.=-.|++|....+++.++...   -.+...+++...  .+++.+..|.....+  =.+++  +|+...|+|.+..+.
T Consensus         3 ~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tV--P~ifi--~g~~igG~~dl~~~~   78 (86)
T TIGR02183         3 VIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETV--PQIFV--DEKHVGGCTDFEQLV   78 (86)
T ss_pred             EEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCc--CeEEE--CCEEecCHHHHHHHH
Confidence            455556899999999999887542   257777787432  223344445311122  13355  367788999988875


Q ss_pred             HH
Q 031708          147 TV  148 (154)
Q Consensus       147 r~  148 (154)
                      +.
T Consensus        79 ~~   80 (86)
T TIGR02183        79 KE   80 (86)
T ss_pred             Hh
Confidence            53

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=80.83  E-value=12  Score=26.96  Aligned_cols=81  Identities=11%  Similarity=0.174  Sum_probs=48.0

Q ss_pred             CCCCCCCC--eEEEEcCCCcchHHHHHHHHHH-----cCCCc--EEEEEcCCcc----------------------cHhH
Q 031708           63 MEPSLLQP--GVVIYDGVCHLCHGGVKWVIRA-----DKYRK--IKFCCLQSQA----------------------AEPY  111 (154)
Q Consensus        63 ~~p~~~~~--~vVfYDG~C~LC~~~V~fl~r~-----Dr~~r--~~F~~iQS~~----------------------g~~l  111 (154)
                      .+.....+  .+.||-..|+-|......+.+.     +....  +.++++....                      ...+
T Consensus        12 ~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T cd03009          12 PVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRL   91 (131)
T ss_pred             cHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHH
Confidence            33333444  4557799999999988776542     11123  4555554321                      1345


Q ss_pred             HHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708          112 LRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT  147 (154)
Q Consensus       112 L~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr  147 (154)
                      .+.||+..  + =++++++.+|++. ..+|.-.++.
T Consensus        92 ~~~~~v~~--~-P~~~lid~~G~i~-~~~~~~~~~~  123 (131)
T cd03009          92 NRTFKIEG--I-PTLIILDADGEVV-TTDARELVLE  123 (131)
T ss_pred             HHHcCCCC--C-CEEEEECCCCCEE-cccHHHHHhh
Confidence            56677632  3 4788999889854 5567665554

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PTZ00102 disulphide isomerase; Provisional

Probab=80.59  E-value=12  Score=32.83  Aligned_cols=77  Identities=14%  Similarity=0.071  Sum_probs=50.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHH-----cCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce-EEEe---hH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRA-----DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL-YHQA---ST  140 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~-----Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~-~y~g---Sd  140 (154)
                      -.+.||..+|+.|......+.+.     +...++.|+.+.-.....+.+++|+..  . -+++++.+++. .|.|   .+
T Consensus        52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~--~-Pt~~~~~~g~~~~y~g~~~~~  128 (477)
T PTZ00102         52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG--Y-PTIKFFNKGNPVNYSGGRTAD  128 (477)
T ss_pred             EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc--c-cEEEEEECCceEEecCCCCHH
Confidence            46889999999999877654432     234579999887767778888999853  3 36777765432 2333   44


Q ss_pred             HHHHHHHHc
Q 031708          141 GGGWGITVN  149 (154)
Q Consensus       141 Avl~ilr~l  149 (154)
                      .+...+..+
T Consensus       129 ~l~~~l~~~  137 (477)
T PTZ00102        129 GIVSWIKKL  137 (477)
T ss_pred             HHHHHHHHh
Confidence            455544444

>PRK10996 thioredoxin 2; Provisional

Probab=80.12  E-value=14  Score=27.69  Aligned_cols=62  Identities=10%  Similarity=0.137  Sum_probs=44.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH  136 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y  136 (154)
                      .+.||-.+|+.|......+.+.-  ..+++.|+.+.-....++.+++|+.. -.  ++++.+ +|+..
T Consensus        56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~-~P--tlii~~-~G~~v  119 (139)
T PRK10996         56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRS-IP--TIMIFK-NGQVV  119 (139)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCc-cC--EEEEEE-CCEEE
Confidence            67899999999999877665432  34578888887776778888999843 23  666665 46644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
2l57_A	126	Uncharacterized protein; structural genomics, unkn	95.84
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	95.38
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	95.19
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	94.94
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	94.91
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	94.88
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	94.75
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	94.68
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	94.59
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	94.5
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	94.49
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	94.42
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	94.38
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	94.35
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	94.35
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	94.33
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	94.33
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	94.29
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	94.2
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	94.04
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	94.04
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	93.99
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	93.99
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	93.93
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	93.89
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	93.88
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	93.84
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	93.77
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	93.72
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	93.7
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	93.68
2kuc_A	130	Putative disulphide-isomerase; structural genomics	93.65
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	93.54
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	93.49
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	93.49
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	93.38
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	93.31
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	93.25
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	93.23
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	93.17
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	93.09
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	93.08
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	92.92
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	92.88
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	92.85
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	92.83
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	92.83
3raz_A	151	Thioredoxin-related protein; structural genomics,	92.76
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	92.48
1mek_A	120	Protein disulfide isomerase; electron transport, r	92.43
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	92.4
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	92.39
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	92.33
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	92.26
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	92.19
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	92.16
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	92.16
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	92.06
2lrt_A	152	Uncharacterized protein; structural genomics, thio	92.04
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	91.91
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	91.81
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	91.78
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	91.75
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	91.69
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	91.69
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	91.66
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	91.66
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	91.65
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	91.62
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	91.59
4evm_A	138	Thioredoxin family protein; structural genomics, n	91.58
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	91.45
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	91.36
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	91.34
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	91.31
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	91.19
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	91.18
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	91.11
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	91.06
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	91.02
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	90.99
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	90.93
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	90.8
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	90.67
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	90.64
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	90.62
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	90.51
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	90.46
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	90.28
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	90.27
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	90.23
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	90.2
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	90.16
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	90.05
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	90.0
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	89.99
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	89.96
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	89.93
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	89.82
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	89.74
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	89.69
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	89.64
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	89.6
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	89.57
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	89.5
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	89.44
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	89.25
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	89.15
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	88.87
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	88.81
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	88.75
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	88.74
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	88.73
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	88.72
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	88.52
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	88.41
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	88.36
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	88.26
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	88.24
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	88.17
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	88.12
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	88.05
1kte_A	105	Thioltransferase; redox-active center, electron tr	88.01
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	87.97
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	87.95
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	87.91
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	87.65
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	87.4
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	87.36
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	87.12
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	87.01
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	86.91
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	86.81
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	86.61
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	86.6
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	86.45
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	86.24
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	85.9
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	85.81
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	85.71
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	85.59
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	85.54
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	85.44
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	85.38
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	85.32
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	85.12
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	84.91
1z6m_A	175	Conserved hypothetical protein; structural genomic	84.67
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	84.47
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	84.41
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	84.35
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	84.06
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	84.0
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	83.98
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	83.68
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	83.47
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	83.16
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	82.81
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	82.59
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	82.55
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	82.37
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	82.32
4f03_A	253	Glutathione transferase; GST fold; 1.80A {Phaneroc	82.32
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	81.82
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	81.76
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	81.74
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	81.3
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	81.23
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	81.19
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	81.19
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	80.98
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	80.72
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	80.65
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	80.56
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	80.55
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	80.49
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	80.35
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	80.33
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	80.22

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=95.84  E-value=0.041  Score=37.92  Aligned_cols=78  Identities=14%  Similarity=0.092  Sum_probs=53.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcC--CcccHhHHHhcCCChhhccceEEEEECCceE---EEe---hH
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQ--SQAAEPYLRLCGLDREDVLRRFLFVEGPGLY---HQA---ST  140 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQ--S~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~---y~g---Sd  140 (154)
                      .+.||..+|+.|......+.+...  .+.+.|+.+.  .....++.+.||+..  + =++++++.+|+.   +.|   .+
T Consensus        30 lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~--~-Pt~~~~~~~G~~~~~~~G~~~~~  106 (126)
T 2l57_A           30 IIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANI--V-PTTVFLDKEGNKFYVHQGLMRKN  106 (126)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCS--S-SEEEEECTTCCEEEEEESCCCHH
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcc--e-eEEEEECCCCCEEEEecCCCCHH
Confidence            577899999999999887766432  2568888777  666677888999853  2 478888866765   333   34


Q ss_pred             HHHHHHHHcCC
Q 031708          141 GGGWGITVNGK  151 (154)
Q Consensus       141 Avl~ilr~lg~  151 (154)
                      .+...++.+.+
T Consensus       107 ~l~~~l~~~~~  117 (126)
T 2l57_A          107 NIETILNSLGV  117 (126)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHhc
Confidence            55555554433

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=95.38  E-value=0.034  Score=35.97  Aligned_cols=73  Identities=11%  Similarity=0.044  Sum_probs=47.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc----cHhHHHhcCCC---hhhccceEEEEECCceEEEehHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA----AEPYLRLCGLD---REDVLRRFLFVEGPGLYHQASTGG  142 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~----g~~lL~~~Gl~---~e~~~~Sivlid~~G~~y~gSdAv  142 (154)
                      +.+||.--.|+.|.+...++..+.-  .+.+..+.-..    .+++.+.+|..   ...+ =. +++  +|++..|++.+
T Consensus         5 ~v~ly~~~~Cp~C~~~~~~L~~~~i--~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~v-P~-i~i--~g~~i~g~~~i   78 (89)
T 3msz_A            5 KVKIYTRNGCPYCVWAKQWFEENNI--AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTV-PQ-IFI--DDEHIGGFTEL   78 (89)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTC--CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSS-CE-EEE--TTEEEESHHHH
T ss_pred             EEEEEEcCCChhHHHHHHHHHHcCC--CceEEEeecCCChhHHHHHHHHhCCCCCCCCcc-CE-EEE--CCEEEeChHHH
Confidence            4667777899999999999987764  45555553221    24455666651   1122 12 344  57889999999


Q ss_pred             HHHHHH
Q 031708          143 GWGITV  148 (154)
Q Consensus       143 l~ilr~  148 (154)
                      ..+.+.
T Consensus        79 ~~~~~~   84 (89)
T 3msz_A           79 KANADK   84 (89)
T ss_dssp             HHTHHH
T ss_pred             HHHHHH
Confidence            887764

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=95.19  E-value=0.057  Score=35.57  Aligned_cols=71  Identities=7%  Similarity=0.012  Sum_probs=47.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhc-CCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLC-GLDREDVLRRFLFVEGPGLYHQASTGGGWGIT  147 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~-Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr  147 (154)
                      .+.++|+--.|+.|.+...++.++.  -.+.++++.....+++.+.+ |..  .+ =++ ++  +|+...|++++..+.+
T Consensus         6 ~~v~~y~~~~C~~C~~~~~~L~~~~--i~~~~vdv~~~~~~~l~~~~~~~~--~v-P~l-~~--~g~~i~g~~~i~~~~~   77 (89)
T 2klx_A            6 KEIILYTRPNCPYCKRARDLLDKKG--VKYTDIDASTSLRQEMVQRANGRN--TF-PQI-FI--GDYHVGGCDDLYALEN   77 (89)
T ss_dssp             CCEEEESCSCCTTTHHHHHHHHHHT--CCEEEECSCHHHHHHHHHHHHSSC--CS-CEE-EE--TTEECCSHHHHHHHHH
T ss_pred             ceEEEEECCCChhHHHHHHHHHHcC--CCcEEEECCHHHHHHHHHHhCCCC--Cc-CEE-EE--CCEEEeChHHHHHHHH
Confidence            4567777789999999999998875  36788888722234455556 542  12 133 33  5788889999877654

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=94.94  E-value=0.17  Score=34.17  Aligned_cols=80  Identities=14%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEE---e---hHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQ---A---STGG  142 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~---g---SdAv  142 (154)
                      -.+.||.-+|+.|......+.+.... ..+.|..+.-....++.+.+|+..  + =+++++. +|+...   |   .+.+
T Consensus        22 ~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~-~G~~v~~~~G~~~~~~l   97 (110)
T 2l6c_A           22 AIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFER--V-PTLVFIR-DGKVAKVFSGIMNPREL   97 (110)
T ss_dssp             EEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCS--S-CEEEEEE-SSSEEEEEESCCCHHHH
T ss_pred             EEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcc--c-CEEEEEE-CCEEEEEEcCCCCHHHH
Confidence            36789999999999999988776543 357777776666677888898853  2 3676664 354333   4   3556


Q ss_pred             HHHHHHcCCCC
Q 031708          143 GWGITVNGKPG  153 (154)
Q Consensus       143 l~ilr~lg~p~  153 (154)
                      ...+.....|+
T Consensus        98 ~~~~~~~~~~~  108 (110)
T 2l6c_A           98 QALYASIHHHH  108 (110)
T ss_dssp             HHHHHTC----
T ss_pred             HHHHHHHhhhc
Confidence            66666665553

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=94.91  E-value=0.085  Score=36.96  Aligned_cols=63  Identities=16%  Similarity=0.199  Sum_probs=43.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-----------------------ccHhHHHhcCCChhhccceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-----------------------AAEPYLRLCGLDREDVLRRFL  127 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-----------------------~g~~lL~~~Gl~~e~~~~Siv  127 (154)
                      .+.||..+|+.|......+.+.-.++++.|+.+...                       ...++.+.||+..  + -+++
T Consensus        46 ll~f~~~~C~~C~~~~~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~-P~~~  122 (156)
T 1kng_A           46 LVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYG--V-PETF  122 (156)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCS--S-CEEE
T ss_pred             EEEEEcccCHhHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCc--c-CeEE
Confidence            567899999999999999988766566777776521                       1223455666642  2 3678


Q ss_pred             EEECCceEE
Q 031708          128 FVEGPGLYH  136 (154)
Q Consensus       128 lid~~G~~y  136 (154)
                      +++.+|++.
T Consensus       123 ~id~~G~i~  131 (156)
T 1kng_A          123 VVGREGTIV  131 (156)
T ss_dssp             EECTTSBEE
T ss_pred             EEcCCCCEE
Confidence            888888763

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=94.88  E-value=0.16  Score=35.82  Aligned_cols=65  Identities=11%  Similarity=0.195  Sum_probs=44.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCcc-------------------------cHhHHHhcCCChhhc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQA-------------------------AEPYLRLCGLDREDV  122 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~-------------------------g~~lL~~~Gl~~e~~  122 (154)
                      .+.||..+|+.|......+.+.-   ....+.|+.+....                         ...+.+.||+..  +
T Consensus        33 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~--~  110 (152)
T 2lrn_A           33 LVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVG--F  110 (152)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCS--S
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCc--C
Confidence            56689999999999888776532   22346666664332                         355677888753  2


Q ss_pred             cceEEEEECCceEEEe
Q 031708          123 LRRFLFVEGPGLYHQA  138 (154)
Q Consensus       123 ~~Sivlid~~G~~y~g  138 (154)
                       -+++++|.+|++..+
T Consensus       111 -P~~~lid~~G~i~~~  125 (152)
T 2lrn_A          111 -PHIILVDPEGKIVAK  125 (152)
T ss_dssp             -CEEEEECTTSEEEEE
T ss_pred             -CeEEEECCCCeEEEe
Confidence             478899888887554

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=94.75  E-value=0.089  Score=37.00  Aligned_cols=63  Identities=14%  Similarity=0.166  Sum_probs=47.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||.-+|+.|......+.+..  ..+++.|+.+.-....++.+.||+..  + =++++++.+|..
T Consensus        41 ~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~~G~~  105 (136)
T 2l5l_A           41 AIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRS--I-PSILFIPMEGKP  105 (136)
T ss_dssp             EEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--S-CEEEEECSSSCC
T ss_pred             EEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCC--C-CEEEEECCCCcE
Confidence            367899999999999988876643  23468888887766778888999854  3 378888666765

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=94.68  E-value=0.25  Score=35.18  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=26.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQS  105 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS  105 (154)
                      .+.||..+|+.|......+.+...+ +.+.|+.+..
T Consensus        41 lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~   76 (165)
T 3ha9_A           41 ILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDF   76 (165)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             EEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEe
Confidence            4568899999999999888775432 2677776643

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=94.59  E-value=0.13  Score=34.17  Aligned_cols=62  Identities=13%  Similarity=0.117  Sum_probs=45.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||..+|+.|......+.+..  ..+++.|..+.-....++.+.+|+..  . =+++++. +|..
T Consensus        28 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   91 (115)
T 1thx_A           28 VLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEG--V-PALRLVK-GEQI   91 (115)
T ss_dssp             EEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCc--e-eEEEEEc-CCEE
Confidence            467899999999999998876643  23468888887766778889999863  2 3677764 4654

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=94.50  E-value=0.1  Score=34.39  Aligned_cols=61  Identities=13%  Similarity=0.108  Sum_probs=44.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||.-+|+.|......+.+..  ..+++.|+.+.-....++.+.+|+..  . =+++++. +|+.
T Consensus        24 ~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   86 (108)
T 2trx_A           24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG--I-PTLLLFK-NGEV   86 (108)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcc--c-CEEEEEe-CCEE
Confidence            67789999999999988876643  23568998887666677888898853  2 3677764 4654

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=94.49  E-value=0.27  Score=32.29  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=45.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCC-----CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKY-----RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~-----~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .+.||-.+|+.|......+.+....     ..+.|+.+......++.+.+|+..  + =+++++.+
T Consensus        25 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~   87 (111)
T 3uvt_A           25 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRG--Y-PTLLLFRG   87 (111)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCS--S-SEEEEEET
T ss_pred             EEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCc--c-cEEEEEeC
Confidence            6779999999999999888776543     479998888777888899999863  2 36777754

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=94.42  E-value=0.028  Score=35.63  Aligned_cols=63  Identities=10%  Similarity=0.084  Sum_probs=42.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHH--cCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE-EEe
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRA--DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY-HQA  138 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~--Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~-y~g  138 (154)
                      ..++||..+|+.|......+.+.  ...+++.|..+.-....++.+.+|+..  + =++++   +|+. +.|
T Consensus         5 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~---~G~~~~~G   70 (85)
T 1fo5_A            5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMA--V-PTIVI---NGDVEFIG   70 (85)
T ss_dssp             EEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCC--S-SEEEE---TTEEECCS
T ss_pred             EEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcc--c-CEEEE---CCEEeeec
Confidence            36789999999999999988773  333467777776555556667888752  2 25655   4664 444

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=94.38  E-value=0.088  Score=36.76  Aligned_cols=61  Identities=18%  Similarity=0.170  Sum_probs=46.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      .+.||..+|+.|......+.+..  ..+++.|+.+.-....++.+.||+..  + =++++++.+|.
T Consensus        55 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~~~g~  117 (141)
T 3hxs_A           55 IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQS--I-PTIWFVPMKGE  117 (141)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--S-SEEEEECSSSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCC--c-CEEEEEeCCCC
Confidence            56699999999999988876643  23568888887777788899999853  2 37888876665

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=94.35  E-value=0.16  Score=35.02  Aligned_cols=65  Identities=6%  Similarity=0.046  Sum_probs=44.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc----CCCcEEEEEcCCcc-------------------------cHhHHHhcCCChhh
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD----KYRKIKFCCLQSQA-------------------------AEPYLRLCGLDRED  121 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D----r~~r~~F~~iQS~~-------------------------g~~lL~~~Gl~~e~  121 (154)
                      .+.||..+|+.|......+.+.-    ....+.|+.+....                         ...+.+.||+..  
T Consensus        37 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~--  114 (148)
T 3fkf_A           37 LLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILT--  114 (148)
T ss_dssp             EEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCS--
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCC--
Confidence            46688999999999998876643    22237776664322                         335677888753  


Q ss_pred             ccceEEEEECCceEEEe
Q 031708          122 VLRRFLFVEGPGLYHQA  138 (154)
Q Consensus       122 ~~~Sivlid~~G~~y~g  138 (154)
                      + -+++++|.+|++...
T Consensus       115 ~-P~~~lid~~G~i~~~  130 (148)
T 3fkf_A          115 L-PTNILLSPTGKILAR  130 (148)
T ss_dssp             S-SEEEEECTTSBEEEE
T ss_pred             c-CEEEEECCCCeEEEe
Confidence            3 478889888887554

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=94.35  E-value=0.11  Score=35.60  Aligned_cols=63  Identities=6%  Similarity=0.095  Sum_probs=43.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCcc-------------------------cHhHHHhcCCChhhc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQA-------------------------AEPYLRLCGLDREDV  122 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~-------------------------g~~lL~~~Gl~~e~~  122 (154)
                      .+.||...|+.|......+.+.-   +...+.|+.+....                         ...+.+.||+..  .
T Consensus        38 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~  115 (145)
T 3erw_A           38 ILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIIT--I  115 (145)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCE--E
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCcCc--c
Confidence            56699999999999988776643   22467777774421                         335667788743  3


Q ss_pred             cceEEEEECCceEE
Q 031708          123 LRRFLFVEGPGLYH  136 (154)
Q Consensus       123 ~~Sivlid~~G~~y  136 (154)
                       -++++++.+|++.
T Consensus       116 -P~~~lid~~G~i~  128 (145)
T 3erw_A          116 -PTSFLLNEKGEIE  128 (145)
T ss_dssp             -SEEEEECTTCCEE
T ss_pred             -CeEEEEcCCCcEE
Confidence             4788888888764

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=94.33  E-value=0.19  Score=33.92  Aligned_cols=79  Identities=9%  Similarity=-0.021  Sum_probs=51.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE---EEe---hHHH
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY---HQA---STGG  142 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~---y~g---SdAv  142 (154)
                      .+.||..+|+.|......+.+...  .+++.|+.+.-....++.+.+|+..  + =+++++. +|+.   +.|   .+.+
T Consensus        21 lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~-~G~~~~~~~G~~~~~~l   96 (112)
T 2voc_A           21 LADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMS--I-PTLLVLK-DGEVVETSVGFKPKEAL   96 (112)
T ss_dssp             EEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCS--B-SEEEEEE-TTEEEEEEESCCCHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCc--c-cEEEEEe-CCEEEEEEeCCCCHHHH
Confidence            567899999999998887765332  2467887776666667788999853  2 3677764 4654   333   2455


Q ss_pred             HHHHHHcCCCC
Q 031708          143 GWGITVNGKPG  153 (154)
Q Consensus       143 l~ilr~lg~p~  153 (154)
                      ...+...-+++
T Consensus        97 ~~~l~~~~~~~  107 (112)
T 2voc_A           97 QELVNKHLLEH  107 (112)
T ss_dssp             HHHHHTTSCSC
T ss_pred             HHHHHHHHHhh
Confidence            56665554443

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=94.33  E-value=0.082  Score=36.38  Aligned_cols=64  Identities=11%  Similarity=0.232  Sum_probs=42.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCC---------------------------cccHhHHHhcCCChhh
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQS---------------------------QAAEPYLRLCGLDRED  121 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS---------------------------~~g~~lL~~~Gl~~e~  121 (154)
                      .+.||..+|+.|......+.+.-.  .+++.|+.+..                           .....+.+.||+..  
T Consensus        33 lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--  110 (148)
T 2b5x_A           33 LIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEY--  110 (148)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCCCC--
T ss_pred             EEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhCCCC--
Confidence            677899999999998887766432  22377766642                           22335667788743  


Q ss_pred             ccceEEEEECCceEEE
Q 031708          122 VLRRFLFVEGPGLYHQ  137 (154)
Q Consensus       122 ~~~Sivlid~~G~~y~  137 (154)
                      . -+++++|.+|++..
T Consensus       111 ~-P~~~lid~~G~i~~  125 (148)
T 2b5x_A          111 V-PAYYVFDKTGQLRH  125 (148)
T ss_dssp             S-SEEEEECTTCBEEE
T ss_pred             C-CEEEEECCCCcEEE
Confidence            2 47888888887644

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=94.29  E-value=0.15  Score=34.57  Aligned_cols=62  Identities=11%  Similarity=0.216  Sum_probs=42.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcc----------------------cHhHHHhcCCChhhccceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQA----------------------AEPYLRLCGLDREDVLRRFL  127 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~----------------------g~~lL~~~Gl~~e~~~~Siv  127 (154)
                      .+.||...|+.|......+.+.-. .+.+.|+.+....                      ...+.+.||+..  + -+++
T Consensus        28 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~--~-P~~~  104 (136)
T 1lu4_A           28 VLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW--Q-PAFV  104 (136)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCS--S-SEEE
T ss_pred             EEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCC--C-CEEE
Confidence            566899999999998887766432 1256666654322                      345567777743  3 4788


Q ss_pred             EEECCceE
Q 031708          128 FVEGPGLY  135 (154)
Q Consensus       128 lid~~G~~  135 (154)
                      +++.+|++
T Consensus       105 lid~~G~i  112 (136)
T 1lu4_A          105 FYRADGTS  112 (136)
T ss_dssp             EECTTSCE
T ss_pred             EECCCCcE
Confidence            88888887

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=94.20  E-value=0.027  Score=35.72  Aligned_cols=64  Identities=17%  Similarity=0.110  Sum_probs=43.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHH--cCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE-EEeh
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRA--DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY-HQAS  139 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~--Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~-y~gS  139 (154)
                      ..++||..+|+.|......+.+.  ...+++.|..+.-....++.+.+|+..  + =++++   +|+. +.|.
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~---~G~~~~~G~   70 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMA--V-PAIAI---NGVVRFVGA   70 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSC--S-SEEEE---TTTEEEECS
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCcee--e-CEEEE---CCEEEEccC
Confidence            46889999999999999888763  223456666665555566778888753  2 25655   4553 5553

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=94.04  E-value=0.17  Score=33.07  Aligned_cols=61  Identities=11%  Similarity=0.074  Sum_probs=44.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||.-+|+.|......+.+...  .+++.|+.+.-.....+.+.+|+..  . =+++++. +|+.
T Consensus        24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   86 (107)
T 2i4a_A           24 LVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRS--I-PTLMLVR-DGKV   86 (107)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCc--c-CEEEEEe-CCEE
Confidence            577899999999999887766432  3478888887666677888899853  2 3676664 4654

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=94.04  E-value=0.1  Score=35.23  Aligned_cols=65  Identities=14%  Similarity=0.232  Sum_probs=42.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCc-----------------------ccHhHHHhcCCChhhccceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQ-----------------------AAEPYLRLCGLDREDVLRRF  126 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~-----------------------~g~~lL~~~Gl~~e~~~~Si  126 (154)
                      .+.||..+|+.|......+.+.-. .+++.|+.+...                       ....+.+.||+..  . -++
T Consensus        29 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~--~-P~~  105 (136)
T 1zzo_A           29 VLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ--Q-PAY  105 (136)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCS--S-SEE
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCC--C-ceE
Confidence            567899999999999888876432 125666655431                       1234456666642  2 478


Q ss_pred             EEEECCceE--EEe
Q 031708          127 LFVEGPGLY--HQA  138 (154)
Q Consensus       127 vlid~~G~~--y~g  138 (154)
                      ++++.+|++  +.|
T Consensus       106 ~~id~~g~i~~~~g  119 (136)
T 1zzo_A          106 AFVDPHGNVDVVRG  119 (136)
T ss_dssp             EEECTTCCEEEEES
T ss_pred             EEECCCCCEEEEec
Confidence            888888887  554

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=93.99  E-value=0.27  Score=32.18  Aligned_cols=71  Identities=7%  Similarity=0.030  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-c-cHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHH
Q 031708           68 LQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-A-AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWG  145 (154)
Q Consensus        68 ~~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~-g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~i  145 (154)
                      ..+.++|+--.|+.|.....++..+.  -.+.++++... . .+++.+.+|..  .+ =. +++  +|+...|++++..+
T Consensus         5 m~~v~ly~~~~C~~C~~~~~~L~~~~--i~~~~~di~~~~~~~~~l~~~~~~~--~v-P~-l~~--~g~~i~g~~~i~~~   76 (92)
T 2khp_A            5 MVDVIIYTRPGCPYCARAKALLARKG--AEFNEIDASATPELRAEMQERSGRN--TF-PQ-IFI--GSVHVGGCDDLYAL   76 (92)
T ss_dssp             CCCEEEEECTTCHHHHHHHHHHHHTT--CCCEEEESTTSHHHHHHHHHHHTSS--CC-CE-EEE--TTEEEESHHHHHHH
T ss_pred             cccEEEEECCCChhHHHHHHHHHHcC--CCcEEEECCCCHHHHHHHHHHhCCC--Cc-CE-EEE--CCEEEcCHHHHHHH
Confidence            34677888899999999999998764  36788888642 2 23333455532  12 12 343  47778899987664


Q ss_pred             H
Q 031708          146 I  146 (154)
Q Consensus       146 l  146 (154)
                      .
T Consensus        77 ~   77 (92)
T 2khp_A           77 E   77 (92)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=93.99  E-value=0.28  Score=34.34  Aligned_cols=64  Identities=8%  Similarity=0.184  Sum_probs=41.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcc----------------------cHhHHHhcCCChhhccce
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQA----------------------AEPYLRLCGLDREDVLRR  125 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~----------------------g~~lL~~~Gl~~e~~~~S  125 (154)
                      .+.||..+|+.|......+.+.-.   ...+.|+.+....                      ...+.+.||+..  . -+
T Consensus        30 lv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~-P~  106 (151)
T 2f9s_A           30 FLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP--L-PT  106 (151)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCS--S-CE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCC--C-Ce
Confidence            566899999999998887765432   2246666554321                      224567777743  2 47


Q ss_pred             EEEEECCceEEE
Q 031708          126 FLFVEGPGLYHQ  137 (154)
Q Consensus       126 ivlid~~G~~y~  137 (154)
                      ++++|.+|++..
T Consensus       107 ~~lid~~G~i~~  118 (151)
T 2f9s_A          107 TFLINPEGKVVK  118 (151)
T ss_dssp             EEEECTTSEEEE
T ss_pred             EEEECCCCcEEE
Confidence            888888888654

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=93.93  E-value=0.18  Score=33.04  Aligned_cols=62  Identities=11%  Similarity=0.107  Sum_probs=44.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||..+|+.|......+.+..  ..+++.|..+.-....++.+.+|+..  . =+++++. +|..
T Consensus        20 ~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   83 (105)
T 1nsw_A           20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMS--I-PTLILFK-GGRP   83 (105)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCcc--c-cEEEEEe-CCeE
Confidence            367789999999999988776543  23458888777666777888999854  2 3677764 4653

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=93.89  E-value=0.16  Score=34.79  Aligned_cols=62  Identities=11%  Similarity=-0.010  Sum_probs=45.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||..+|+.|......+.+.-  ..+++.|+.+.-....++.+.||+..  + =+++++. +|+.
T Consensus        34 vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~--~-Pt~~~~~-~G~~   97 (119)
T 1w4v_A           34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSA--V-PTVLAMK-NGDV   97 (119)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCc--c-cEEEEEe-CCcE
Confidence            367899999999999988776643  23568888887766777888999864  2 3676664 4654

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=93.88  E-value=0.26  Score=35.05  Aligned_cols=64  Identities=14%  Similarity=0.226  Sum_probs=45.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCcc-------------------cHhHHHhcCCChhhccceEEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQA-------------------AEPYLRLCGLDREDVLRRFLF  128 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~-------------------g~~lL~~~Gl~~e~~~~Sivl  128 (154)
                      .+.||-..|+.|......+.+.-   .+..+.|+.+....                   ..++.+.||+..  . -++++
T Consensus        45 ll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~-P~~~l  121 (158)
T 3hdc_A           45 LVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANR--L-PDTFI  121 (158)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCS--S-SEEEE
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCC--c-ceEEE
Confidence            45689999999999888776643   23578888776543                   345678888753  2 47888


Q ss_pred             EECCceEEE
Q 031708          129 VEGPGLYHQ  137 (154)
Q Consensus       129 id~~G~~y~  137 (154)
                      +|.+|++..
T Consensus       122 id~~G~i~~  130 (158)
T 3hdc_A          122 VDRKGIIRQ  130 (158)
T ss_dssp             ECTTSBEEE
T ss_pred             EcCCCCEEE
Confidence            888887543

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=93.84  E-value=0.23  Score=31.45  Aligned_cols=70  Identities=10%  Similarity=0.059  Sum_probs=46.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc--ccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ--AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT  147 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~--~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr  147 (154)
                      +.++|+--.|+.|.....++....  -.+..+++...  ...++.+.+|..  .+ =++ ++  +|....|++++..+..
T Consensus         2 ~i~~y~~~~C~~C~~~~~~l~~~~--i~~~~~~i~~~~~~~~~~~~~~~~~--~v-P~l-~~--~g~~i~g~~~i~~~~~   73 (82)
T 1fov_A            2 NVEIYTKETCPYCHRAKALLSSKG--VSFQELPIDGNAAKREEMIKRSGRT--TV-PQI-FI--DAQHIGGYDDLYALDA   73 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHT--CCCEEEECTTCSHHHHHHHHHHSSC--CS-CEE-EE--TTEEEESHHHHHHHHH
T ss_pred             cEEEEECCCChhHHHHHHHHHHCC--CCcEEEECCCCHHHHHHHHHHhCCC--Cc-CEE-EE--CCEEEeCHHHHHHHHH
Confidence            456777889999999999998775  35778888642  222344455542  12 133 33  5778899999877654

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.77  E-value=0.12  Score=35.38  Aligned_cols=60  Identities=15%  Similarity=0.170  Sum_probs=43.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC------CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK------YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr------~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      .+.||..+|+.|......+.+.-.      .+++.|+.+.-.....+.+.||+..  + =++++++. |.
T Consensus        29 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~-g~   94 (133)
T 1x5d_A           29 MVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRG--F-PTIKIFQK-GE   94 (133)
T ss_dssp             EEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCS--S-SEEEEEET-TE
T ss_pred             EEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCe--e-CeEEEEeC-CC
Confidence            677999999999988776655322      1568898887766677888898853  2 37888876 44

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=93.72  E-value=0.081  Score=37.21  Aligned_cols=78  Identities=9%  Similarity=0.047  Sum_probs=48.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcC---C----------------------cccHhHHHhcCCChhhcc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQ---S----------------------QAAEPYLRLCGLDREDVL  123 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQ---S----------------------~~g~~lL~~~Gl~~e~~~  123 (154)
                      .+.||-..|+.|......+.+.-.  +=.|.++.+.   +                      .....+.+.||+..  + 
T Consensus        34 ll~f~~~~C~~C~~~~~~l~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~--~-  110 (154)
T 3ia1_A           34 VIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG--Q-  110 (154)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS--S-
T ss_pred             EEEEEcccChhHHHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc--c-
Confidence            567889999999999888866433  2344455551   0                      13455667777752  3 


Q ss_pred             ceEEEEECCceEEEe------hHHHHHHHHHcCC
Q 031708          124 RRFLFVEGPGLYHQA------STGGGWGITVNGK  151 (154)
Q Consensus       124 ~Sivlid~~G~~y~g------SdAvl~ilr~lg~  151 (154)
                      -+++++|.+|++...      .+.+...++.+.+
T Consensus       111 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~  144 (154)
T 3ia1_A          111 PWTFVVDREGKVVALFAGRAGREALLDALLLAGA  144 (154)
T ss_dssp             CEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccC
Confidence            478889888875432      3455555555443

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=93.70  E-value=0.17  Score=36.42  Aligned_cols=61  Identities=15%  Similarity=0.179  Sum_probs=46.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+-|......+.+... .+++.|+.+.-.....+.+.||+..  + =++++++ +|+.
T Consensus        36 vv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~-~G~~   97 (153)
T 2wz9_A           36 VVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISS--V-PTFLFFK-NSQK   97 (153)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCC--C-CEEEEEE-CCEE
Confidence            677999999999999888766532 2468888887766778888999853  3 3788887 5664

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=93.68  E-value=0.18  Score=35.21  Aligned_cols=64  Identities=14%  Similarity=0.363  Sum_probs=42.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCcccH-----------------------hHHHhcCCChhhccc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQAAE-----------------------PYLRLCGLDREDVLR  124 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~g~-----------------------~lL~~~Gl~~e~~~~  124 (154)
                      .+.||..+|+.|......+.+.-   ....+.|+.+......                       ++.+.||+..  + -
T Consensus        34 lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~-P  110 (152)
T 2lja_A           34 YIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING--I-P  110 (152)
T ss_dssp             EEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS--S-C
T ss_pred             EEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC--C-C
Confidence            46688999999998887775532   2234777776433322                       4566777642  2 4


Q ss_pred             eEEEEECCceEEE
Q 031708          125 RFLFVEGPGLYHQ  137 (154)
Q Consensus       125 Sivlid~~G~~y~  137 (154)
                      ++++++.+|++..
T Consensus       111 ~~~lid~~G~i~~  123 (152)
T 2lja_A          111 RFILLDRDGKIIS  123 (152)
T ss_dssp             CEEEECTTSCEEE
T ss_pred             EEEEECCCCeEEE
Confidence            7888887787655

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=93.65  E-value=0.14  Score=35.05  Aligned_cols=76  Identities=13%  Similarity=0.066  Sum_probs=48.4

Q ss_pred             eEEEEcCCCcchHHHHHHH---HHH--cCCCcEEEEEcCCc--ccHhHHHhcCCChhhccceEEEEECCceEEE---e--
Q 031708           71 GVVIYDGVCHLCHGGVKWV---IRA--DKYRKIKFCCLQSQ--AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQ---A--  138 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl---~r~--Dr~~r~~F~~iQS~--~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~---g--  138 (154)
                      .+.||-.+|+-|......+   ...  ..+.++.++.+...  ....+.+.+|+..  + =++++++.+|+...   |  
T Consensus        31 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~--~-Pt~~~~d~~G~~~~~~~G~~  107 (130)
T 2kuc_A           31 FVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHA--Y-PTLLFINSSGEVVYRLVGAE  107 (130)
T ss_dssp             EEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCS--S-CEEEEECTTSCEEEEEESCC
T ss_pred             EEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCC--C-CEEEEECCCCcEEEEecCCC
Confidence            5678899999999987766   221  11245777776544  4567788999853  3 47888876676432   3  


Q ss_pred             -hHHHHHHHHHc
Q 031708          139 -STGGGWGITVN  149 (154)
Q Consensus       139 -SdAvl~ilr~l  149 (154)
                       .+.+...++.+
T Consensus       108 ~~~~l~~~l~~~  119 (130)
T 2kuc_A          108 DAPELLKKVKLG  119 (130)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence             34555555543

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=93.54  E-value=0.28  Score=34.56  Aligned_cols=56  Identities=9%  Similarity=0.114  Sum_probs=43.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFV  129 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivli  129 (154)
                      .+.||-.+|+-|......+.+....-.+.|+.+.-....++.+.||+..  + =+++++
T Consensus        44 vv~F~a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~   99 (133)
T 3cxg_A           44 VIKFGAVWCKPCNKIKEYFKNQLNYYYVTLVDIDVDIHPKLNDQHNIKA--L-PTFEFY   99 (133)
T ss_dssp             EEEEECTTCHHHHHTHHHHHGGGGTEECEEEEEETTTCHHHHHHTTCCS--S-SEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHhcCEEEEEEeccchHHHHHhcCCCC--C-CEEEEE
Confidence            5678999999999999998887655468888887777778888999853  2 366666

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=93.49  E-value=0.27  Score=32.03  Aligned_cols=61  Identities=10%  Similarity=0.043  Sum_probs=45.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+.|......+.+...  .+++.|+.+......++.+.+|+..  + =++++++ +|+.
T Consensus        23 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   85 (106)
T 3die_A           23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMS--I-PTLIVFK-DGQP   85 (106)
T ss_dssp             EEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--B-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcc--c-CEEEEEe-CCeE
Confidence            677999999999999988866442  3458888887777788889999854  2 3777776 4543

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=93.49  E-value=0.21  Score=36.42  Aligned_cols=65  Identities=12%  Similarity=0.191  Sum_probs=42.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcc-----cHhHHHhcCCCh---------------------hh
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQA-----AEPYLRLCGLDR---------------------ED  121 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~-----g~~lL~~~Gl~~---------------------e~  121 (154)
                      .+.||-.+|+.|......+.+.-.   ...+.++.+....     .++.++.+|++.                     ..
T Consensus        64 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  143 (186)
T 1jfu_A           64 LVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALG  143 (186)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSS
T ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCC
Confidence            566889999999998887765432   2456665553322     256677888741                     02


Q ss_pred             ccceEEEEECCceEE
Q 031708          122 VLRRFLFVEGPGLYH  136 (154)
Q Consensus       122 ~~~Sivlid~~G~~y  136 (154)
                      + -+++++|.+|++.
T Consensus       144 ~-P~~~lid~~G~i~  157 (186)
T 1jfu_A          144 M-PTSVLVDPQGCEI  157 (186)
T ss_dssp             S-SEEEEECTTSBEE
T ss_pred             C-CEEEEECCCCCEE
Confidence            2 4788899888764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=93.38  E-value=0.31  Score=32.45  Aligned_cols=61  Identities=10%  Similarity=0.159  Sum_probs=42.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCC---CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKY---RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~---~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||--+|+-|......+.+....   ..+.|+.+.-....++.+.+|+..  + =+++++. +|+.
T Consensus        25 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   88 (112)
T 3d6i_A           25 VLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISA--V-PYFIIIH-KGTI   88 (112)
T ss_dssp             EEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCc--c-cEEEEEE-CCEE
Confidence            5678999999999999888765433   458888887766778888999853  2 3666665 4654

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=93.31  E-value=0.13  Score=35.62  Aligned_cols=65  Identities=11%  Similarity=0.108  Sum_probs=45.9

Q ss_pred             eEEEEcCCCcchHHHHHHHH--HHcC--CCcEEEEEcCC---cccHhHHHhcCCCh-hhccceEEEEECCceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVI--RADK--YRKIKFCCLQS---QAAEPYLRLCGLDR-EDVLRRFLFVEGPGLYH  136 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~--r~Dr--~~r~~F~~iQS---~~g~~lL~~~Gl~~-e~~~~Sivlid~~G~~y  136 (154)
                      .+.||-.+|+-|......+.  +...  .+++.|+.+.-   ....++.+.||+.. ..+ =++++++.+|+..
T Consensus        33 lv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~-Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           33 LLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI-PAVVVVNSDGKVR  105 (133)
T ss_dssp             EEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCS-SEEEEECTTSCEE
T ss_pred             EEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCcc-ceEEEECCCCCEE
Confidence            56689999999999888766  3221  13577766655   56778889999842 223 4888898778755

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=93.25  E-value=0.6  Score=32.47  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=47.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCccc-----------------------HhHHHhcCCChhhccc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQAA-----------------------EPYLRLCGLDREDVLR  124 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~g-----------------------~~lL~~~Gl~~e~~~~  124 (154)
                      .+.||-..|+.|......+.+.-   ....+.|+.+.....                       ..+.+.||+..  + -
T Consensus        32 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~-P  108 (154)
T 3kcm_A           32 IVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG--V-P  108 (154)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS--B-C
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC--C-C
Confidence            46689999999999888776643   223566666543322                       22556677643  2 4


Q ss_pred             eEEEEECCceEEEe--------hHHHHHHHHHcC
Q 031708          125 RFLFVEGPGLYHQA--------STGGGWGITVNG  150 (154)
Q Consensus       125 Sivlid~~G~~y~g--------SdAvl~ilr~lg  150 (154)
                      ++++++.+|++...        .+.+...++.+.
T Consensus       109 ~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~  142 (154)
T 3kcm_A          109 ETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNEL  142 (154)
T ss_dssp             EEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-
T ss_pred             eEEEECCCCcEEEEEcCCCccccHHHHHHHHHHH
Confidence            68888888886443        235555555543

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=93.23  E-value=0.26  Score=32.15  Aligned_cols=61  Identities=15%  Similarity=0.088  Sum_probs=45.2

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+.|......+.+...  .+++.|+.+.......+.+.+|+..  + =+++++. +|+.
T Consensus        25 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~--~-Pt~~~~~-~g~~   87 (109)
T 3tco_A           25 LVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLN--I-PTTLIFV-NGQL   87 (109)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCccc--C-CEEEEEc-CCcE
Confidence            567999999999999987766542  3468888887777888889999853  2 3666764 4543

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=93.17  E-value=0.39  Score=32.17  Aligned_cols=62  Identities=10%  Similarity=0.075  Sum_probs=45.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||.-.|+.|......+.+...  .+++.|+.+.-....++.+.+|+..  + =+++++. +|..
T Consensus        33 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~--~-Pt~~~~~-~g~~   96 (121)
T 2i1u_A           33 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVS--I-PTLILFK-DGQP   96 (121)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCc--C-CEEEEEE-CCEE
Confidence            3688999999999999988866432  3468888887666778888999853  2 3676666 4654

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=93.09  E-value=0.28  Score=33.01  Aligned_cols=62  Identities=15%  Similarity=0.183  Sum_probs=45.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH  136 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y  136 (154)
                      .+.||--+|+-|......+.+... ...+.|+.+.-.....+.+.+|+..  + =++++++ +|+..
T Consensus        28 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~-~G~~~   90 (109)
T 3f3q_A           28 VVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSA--M-PTLLLFK-NGKEV   90 (109)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEEE
T ss_pred             EEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCc--c-CEEEEEE-CCEEE
Confidence            566899999999999988876542 2457887777767778889999853  2 3788887 46543

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=93.08  E-value=0.15  Score=36.44  Aligned_cols=62  Identities=10%  Similarity=0.222  Sum_probs=39.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcC--C---------------------cccHhHHHhcCCChhhccceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ--S---------------------QAAEPYLRLCGLDREDVLRRFL  127 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQ--S---------------------~~g~~lL~~~Gl~~e~~~~Siv  127 (154)
                      .+.||..+|+.|......+.+.-.+ .+.++.+.  .                     ....++.+.||+..  . -+.+
T Consensus        55 ll~F~a~~C~~C~~~~~~l~~l~~~-~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~-P~~~  130 (168)
T 2b1k_A           55 LLNVWATWCPTCRAEHQYLNQLSAQ-GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG--A-PETF  130 (168)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHT-TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCS--S-SEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccc--c-CEEE
Confidence            5678999999999999888776543 34444443  1                     11223445566542  2 3677


Q ss_pred             EEECCceEE
Q 031708          128 FVEGPGLYH  136 (154)
Q Consensus       128 lid~~G~~y  136 (154)
                      +++.+|++.
T Consensus       131 lid~~G~i~  139 (168)
T 2b1k_A          131 LIDGNGIIR  139 (168)
T ss_dssp             EECTTSBEE
T ss_pred             EECCCCeEE
Confidence            888888754

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=92.92  E-value=0.45  Score=33.45  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=26.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCcc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQA  107 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~  107 (154)
                      .+.||..+|+.|......+.+.-   +...+.|+.+....
T Consensus        38 lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~   77 (165)
T 3or5_A           38 IVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNE   77 (165)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSC
T ss_pred             EEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCC
Confidence            56689999999999988776643   22347777775433

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=92.88  E-value=0.36  Score=31.98  Aligned_cols=61  Identities=13%  Similarity=0.067  Sum_probs=44.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+.|......+.+...  .+++.|+.+.-....++.+.+|+..  + =+++++. +|..
T Consensus        27 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   89 (112)
T 1t00_A           27 LVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMS--I-PTLNVYQ-GGEV   89 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCc--c-cEEEEEe-CCEE
Confidence            677899999999999887766432  3468888887666778888999853  2 2666664 4654

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=92.85  E-value=0.33  Score=33.79  Aligned_cols=62  Identities=8%  Similarity=0.068  Sum_probs=40.2

Q ss_pred             CCcchHHHHHHHHHHcCCCcEEEEEcC-CcccHhHHHh-cCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708           78 VCHLCHGGVKWVIRADKYRKIKFCCLQ-SQAAEPYLRL-CGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT  147 (154)
Q Consensus        78 ~C~LC~~~V~fl~r~Dr~~r~~F~~iQ-S~~g~~lL~~-~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr  147 (154)
                      .|++|.+..+++.++.-  .+...++. ++..++.|.. .|..  .+  =.+++  +|++..|.|-+..+.+
T Consensus        32 ~Cp~C~~ak~~L~~~gi--~~~~~dI~~~~~~~~~l~~~~g~~--tv--P~ifi--~g~~iGG~d~l~~l~~   95 (109)
T 3ipz_A           32 MCGFSNTVVQILKNLNV--PFEDVNILENEMLRQGLKEYSNWP--TF--PQLYI--GGEFFGGCDITLEAFK   95 (109)
T ss_dssp             SSHHHHHHHHHHHHTTC--CCEEEEGGGCHHHHHHHHHHHTCS--SS--CEEEE--TTEEEECHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHcCC--CcEEEECCCCHHHHHHHHHHHCCC--CC--CeEEE--CCEEEeCHHHHHHHHH
Confidence            79999999999988754  57778874 3333333333 3432  12  13455  4788899998776544

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=92.83  E-value=0.28  Score=32.14  Aligned_cols=62  Identities=15%  Similarity=0.101  Sum_probs=44.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||..+|+.|......+.+..  ..+++.|+.+......++.+.+|+..  . =+++++ .+|+.
T Consensus        22 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~-~~G~~   85 (107)
T 1dby_A           22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRS--I-PTIMVF-KGGKK   85 (107)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCS--S-CEEEEE-SSSSE
T ss_pred             EEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCc--C-CEEEEE-eCCEE
Confidence            367789999999999988876643  23468888887766777888898853  2 266665 44554

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=92.83  E-value=0.12  Score=36.56  Aligned_cols=64  Identities=9%  Similarity=-0.005  Sum_probs=47.7

Q ss_pred             EEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC-CceEEE
Q 031708           72 VVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG-PGLYHQ  137 (154)
Q Consensus        72 vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~-~G~~y~  137 (154)
                      +.||+. |+=|......+.+..  .++++.|+-+.......+++.||+..+++ =++++++. +|+.|.
T Consensus        28 v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~i-Ptl~i~~~~~g~~~~   94 (133)
T 2djk_A           28 YIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKF-PAFAIQEVAKNQKFP   94 (133)
T ss_dssp             EEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSS-SEEEEECTTTCCBCC
T ss_pred             EEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccC-CEEEEEecCcCcccC
Confidence            445555 999998888776644  35789999998888888899999987666 57877763 465553

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=92.76  E-value=0.43  Score=33.50  Aligned_cols=65  Identities=9%  Similarity=0.096  Sum_probs=41.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCc------------------------ccHhHHHhcCCChhhcc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQ------------------------AAEPYLRLCGLDREDVL  123 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~------------------------~g~~lL~~~Gl~~e~~~  123 (154)
                      .+.||-.+|+.|......+.+.-   +...+.|+.+...                        ....+.+.||.....+ 
T Consensus        28 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-  106 (151)
T 3raz_A           28 IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVL-  106 (151)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCCSCCS-
T ss_pred             EEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCccCCC-
Confidence            45688999999999998887743   2345777666432                        2334556666322223 


Q ss_pred             ceEEEEECCceEE
Q 031708          124 RRFLFVEGPGLYH  136 (154)
Q Consensus       124 ~Sivlid~~G~~y  136 (154)
                      -+++++|.+|++.
T Consensus       107 P~~~lid~~G~i~  119 (151)
T 3raz_A          107 PFTVVEAPKCGYR  119 (151)
T ss_dssp             SEEEEEETTTTEE
T ss_pred             CEEEEECCCCcEE
Confidence            4688888888753

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=92.48  E-value=0.43  Score=30.93  Aligned_cols=61  Identities=10%  Similarity=0.029  Sum_probs=44.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||.-+|+.|......+.+..  ..+++.|..+.-....++.+.+|+..  . =+++++. +|..
T Consensus        22 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~g~~   84 (109)
T 2yzu_A           22 LVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMS--I-PTVILFK-DGQP   84 (109)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCc--C-CEEEEEe-CCcE
Confidence            57789999999999988776643  23468888887766777888999853  2 3666664 4554

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=92.43  E-value=0.11  Score=34.60  Aligned_cols=79  Identities=13%  Similarity=0.086  Sum_probs=50.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCC-----CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCc----eEEEe---
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKY-----RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPG----LYHQA---  138 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~-----~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G----~~y~g---  138 (154)
                      .+.||-.+|+.|......+.+....     .++.|+.+.......+.+.+|+..  + =+++++.++.    ..+.|   
T Consensus        28 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~g~~~~~~~~~g~~~  104 (120)
T 1mek_A           28 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG--Y-PTIKFFRNGDTASPKEYTAGRE  104 (120)
T ss_dssp             EEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCS--S-SEEEEEESSCSSSCEECCCCSS
T ss_pred             EEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCc--c-cEEEEEeCCCcCCcccccCccC
Confidence            5778999999999988777653321     468888776665566778888753  2 3677765432    22333   


Q ss_pred             hHHHHHHHHHcCCC
Q 031708          139 STGGGWGITVNGKP  152 (154)
Q Consensus       139 SdAvl~ilr~lg~p  152 (154)
                      .+.+...++.+-++
T Consensus       105 ~~~l~~~l~~~~~~  118 (120)
T 1mek_A          105 ADDIVNWLKKRTGP  118 (120)
T ss_dssp             HHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHhccCC
Confidence            45666666554433

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=92.40  E-value=0.18  Score=34.71  Aligned_cols=65  Identities=6%  Similarity=0.073  Sum_probs=40.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcccHh-------------------------HHHhcCCChhhc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQAAEP-------------------------YLRLCGLDREDV  122 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~g~~-------------------------lL~~~Gl~~e~~  122 (154)
                      .+.||..+|+.|......+.+.-.   ...+.|+.+......+                         +.+.||+..  .
T Consensus        35 ll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~--~  112 (148)
T 3hcz_A           35 ILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYA--T  112 (148)
T ss_dssp             EEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCS--S
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCcCC--C
Confidence            455889999999998877766421   2237776664332222                         445556532  2


Q ss_pred             cceEEEEECCceEEEe
Q 031708          123 LRRFLFVEGPGLYHQA  138 (154)
Q Consensus       123 ~~Sivlid~~G~~y~g  138 (154)
                       -+++++|.+|++..+
T Consensus       113 -P~~~lid~~G~i~~~  127 (148)
T 3hcz_A          113 -PVLYVLDKNKVIIAK  127 (148)
T ss_dssp             -CEEEEECTTCBEEEE
T ss_pred             -CEEEEECCCCcEEEe
Confidence             478888888876543

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=92.39  E-value=0.42  Score=30.65  Aligned_cols=61  Identities=15%  Similarity=0.145  Sum_probs=43.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+.|......+.+.... +.+.|..+......++.+.+|+..  . =+++++. +|..
T Consensus        20 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~g~~   81 (104)
T 2e0q_A           20 VVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMS--L-PTVIFFK-DGEP   81 (104)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--S-CEEEEEE-TTEE
T ss_pred             EEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccc--c-CEEEEEE-CCeE
Confidence            5678999999999998877664321 228888887766778888999864  2 3676664 4554

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=92.33  E-value=0.53  Score=30.44  Aligned_cols=61  Identities=16%  Similarity=0.239  Sum_probs=43.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+.|......+.+.-. ...+.|..+......++.+.+|+..  + =++++.+ +|..
T Consensus        23 ~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~g~~   84 (104)
T 2vim_A           23 VVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTA--M-PTFVFIK-DGKE   84 (104)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCcc--c-cEEEEEe-CCcE
Confidence            456899999999999988866432 2367787777666777888898853  2 3666666 4554

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=92.26  E-value=0.16  Score=35.62  Aligned_cols=61  Identities=11%  Similarity=0.048  Sum_probs=43.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||.-+|+.|......+.+..  -.+++.|+.+.-....++.+.+|+..  + =+++++. +|..
T Consensus        44 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~-~G~~  106 (128)
T 2o8v_B           44 LVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG--I-PTLLLFK-NGEV  106 (128)
T ss_dssp             EEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCc--c-CEEEEEe-CCEE
Confidence            57789999999999888776643  23468888887666667778888753  2 3676764 4654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=92.19  E-value=0.64  Score=30.12  Aligned_cols=61  Identities=10%  Similarity=0.177  Sum_probs=44.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+.|......+.+.-.  .+++.|+.+.......+.+.+|+..  . =++++.. +|..
T Consensus        24 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   86 (106)
T 1xwb_A           24 VLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISS--M-PTFVFLK-NGVK   86 (106)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCc--c-cEEEEEc-CCcE
Confidence            567899999999998887766432  2578888887777778888999853  2 2666665 4553

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=92.16  E-value=0.32  Score=34.22  Aligned_cols=62  Identities=19%  Similarity=0.328  Sum_probs=45.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCC---------cccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS---------QAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS---------~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||-.+|+-|......+.+.-.+-.+.|+.+..         ....++.++||+..  + =++++++ +|+.
T Consensus        34 vlv~F~a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~--~-Pt~~~~~-~G~~  104 (135)
T 3emx_A           34 AILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEG--T-PTLVFYK-EGRI  104 (135)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEEECCcCHhhhHhChhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCce--e-CeEEEEc-CCEE
Confidence            367799999999999999888876544466666655         55677788888853  3 3777777 4654

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=92.16  E-value=0.29  Score=35.84  Aligned_cols=65  Identities=12%  Similarity=0.213  Sum_probs=41.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCc-----------------------------ccHhHHHhcCCCh
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQ-----------------------------AAEPYLRLCGLDR  119 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~-----------------------------~g~~lL~~~Gl~~  119 (154)
                      .+.||...|+.|...+..+.+.-.  .+++.|+.+...                             ...++.+.||+..
T Consensus        37 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  116 (188)
T 2cvb_A           37 AVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALR  116 (188)
T ss_dssp             EEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCE
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence            566889999999987777655331  122777777541                             1223456666542


Q ss_pred             hhccceEEEEECCceEEEe
Q 031708          120 EDVLRRFLFVEGPGLYHQA  138 (154)
Q Consensus       120 e~~~~Sivlid~~G~~y~g  138 (154)
                        . -+++++|.+|++...
T Consensus       117 --~-P~~~lid~~G~i~~~  132 (188)
T 2cvb_A          117 --T-PEVFLFDERRLLRYH  132 (188)
T ss_dssp             --E-SEEEEECTTCBEEEE
T ss_pred             --C-CeEEEECCCCcEEEE
Confidence              2 467888888876543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=92.06  E-value=0.41  Score=33.28  Aligned_cols=64  Identities=13%  Similarity=0.280  Sum_probs=39.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcccH----------------------hHHHhcCCChhhccce
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQAAE----------------------PYLRLCGLDREDVLRR  125 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~g~----------------------~lL~~~Gl~~e~~~~S  125 (154)
                      .+.||-..|+.|......+.+.-.   ...+.++.+......                      ++.+.||+..  . -+
T Consensus        32 ll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~-P~  108 (152)
T 3gl3_A           32 YLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKG--M-PT  108 (152)
T ss_dssp             EEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCS--S-SE
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCC--C-Ce
Confidence            455889999999998877765432   222555555322112                      3456677642  2 47


Q ss_pred             EEEEECCceEEE
Q 031708          126 FLFVEGPGLYHQ  137 (154)
Q Consensus       126 ivlid~~G~~y~  137 (154)
                      ++++|.+|++..
T Consensus       109 ~~lid~~G~i~~  120 (152)
T 3gl3_A          109 SFLIDRNGKVLL  120 (152)
T ss_dssp             EEEECTTSBEEE
T ss_pred             EEEECCCCCEEE
Confidence            888988887543

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=92.04  E-value=0.64  Score=33.09  Aligned_cols=65  Identities=6%  Similarity=-0.015  Sum_probs=42.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcccHh-----------------------HHHhcCCChhhccc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQAAEP-----------------------YLRLCGLDREDVLR  124 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~g~~-----------------------lL~~~Gl~~e~~~~  124 (154)
                      .+.||-.+|+.|...+..+.+.-.   +..+.++.+......+                       +.+.||+..  . -
T Consensus        39 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~--~-P  115 (152)
T 2lrt_A           39 LIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN--L-P  115 (152)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS--C-S
T ss_pred             EEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc--C-c
Confidence            466888999999998877765332   1236666664433332                       556777642  2 4


Q ss_pred             eEEEEECCceEEEe
Q 031708          125 RFLFVEGPGLYHQA  138 (154)
Q Consensus       125 Sivlid~~G~~y~g  138 (154)
                      +++++|.+|++...
T Consensus       116 ~~~lid~~G~i~~~  129 (152)
T 2lrt_A          116 SVFLVNRNNELSAR  129 (152)
T ss_dssp             EEEEEETTTEEEEE
T ss_pred             eEEEECCCCeEEEe
Confidence            78889988886553

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=91.91  E-value=0.2  Score=32.63  Aligned_cols=62  Identities=16%  Similarity=0.120  Sum_probs=44.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||.-+|+.|......+.+.-  ..+++.|..+.......+.+.+|+..  . =++++.. +|..
T Consensus        21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~g~~   84 (105)
T 1fb6_A           21 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRS--I-PTVLFFK-NGER   84 (105)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCc--c-cEEEEEe-CCeE
Confidence            367799999999999988776633  23468888887776778888998853  2 2666665 4553

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=91.81  E-value=0.58  Score=30.39  Aligned_cols=61  Identities=13%  Similarity=0.174  Sum_probs=45.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||-.+|+.|......+.+.-. ...+.|+.+......++.+.+|+..  . =+++++.+ |..
T Consensus        24 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~-g~~   85 (105)
T 3m9j_A           24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKS--M-PTFQFFKK-GQK   85 (105)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCCB--S-SEEEEEET-TEE
T ss_pred             EEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCCc--C-cEEEEEEC-CeE
Confidence            567999999999999988877542 2348888887777788889999853  2 37777754 443

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=91.78  E-value=0.55  Score=30.81  Aligned_cols=61  Identities=15%  Similarity=0.250  Sum_probs=45.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      -.+.||-.+|+.|......+.+...  .+++.|+.+.-.....+.+.+|+..  + =+++++.+ |.
T Consensus        25 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~-g~   87 (111)
T 3gnj_A           25 CLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKG--V-PQILYFKD-GE   87 (111)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCS--S-CEEEEEET-TE
T ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCc--C-CEEEEEEC-CE
Confidence            3678999999999999888766442  3468888887777788889999853  2 36777754 54

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=91.75  E-value=0.31  Score=32.87  Aligned_cols=61  Identities=13%  Similarity=0.158  Sum_probs=45.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||-.+|+.|......+.+...+-.+.|+.+.-....++.+.+|+..  + =++++.. +|..
T Consensus        37 vv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   97 (117)
T 2xc2_A           37 VVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLEETARKYNISA--M-PTFIAIK-NGEK   97 (117)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHTTSSSEEEEEETTTSHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHhHHHHhHHHHHHHHHcCcEEEEEECCccHHHHHHcCCCc--c-ceEEEEe-CCcE
Confidence            5678999999999999999887654478888887766778888999853  2 3666664 4554

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=91.69  E-value=0.8  Score=32.69  Aligned_cols=70  Identities=9%  Similarity=0.007  Sum_probs=43.6

Q ss_pred             eEEEEcC------CCcchHHHHHHHHHHcCCC-cEEEEEcCC-cccHhHHHh-cCCChhhccceEEEEECCceEEEehHH
Q 031708           71 GVVIYDG------VCHLCHGGVKWVIRADKYR-KIKFCCLQS-QAAEPYLRL-CGLDREDVLRRFLFVEGPGLYHQASTG  141 (154)
Q Consensus        71 ~vVfYDG------~C~LC~~~V~fl~r~Dr~~-r~~F~~iQS-~~g~~lL~~-~Gl~~e~~~~Sivlid~~G~~y~gSdA  141 (154)
                      .+++|=-      .|++|.+..+++.++.-.. .+...++.. +..++.|.. .|..  .+  =.++|  +|++..|.|-
T Consensus        17 ~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~--tv--P~vfI--~g~~iGG~d~   90 (121)
T 3gx8_A           17 PVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWP--TI--PQLYV--NKEFIGGCDV   90 (121)
T ss_dssp             SEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCC--SS--CEEEE--TTEEEESHHH
T ss_pred             CEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCC--CC--CeEEE--CCEEEecHHH
Confidence            4555544      7999999999998886432 388888853 233333332 3422  12  13455  4788899997


Q ss_pred             HHHHH
Q 031708          142 GGWGI  146 (154)
Q Consensus       142 vl~il  146 (154)
                      +..+.
T Consensus        91 l~~l~   95 (121)
T 3gx8_A           91 ITSMA   95 (121)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=91.69  E-value=0.52  Score=31.28  Aligned_cols=61  Identities=13%  Similarity=0.132  Sum_probs=44.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+.|......+.+.-.. +.+.|+.+.......+.+.+|+..  + =+++++. +|..
T Consensus        32 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~g~~   93 (118)
T 2vm1_A           32 IIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEA--M-PTFLFIK-DGEK   93 (118)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCS--B-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCc--C-cEEEEEe-CCeE
Confidence            5678999999999998888765432 357888777666778888999853  2 3676665 4553

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=91.66  E-value=0.53  Score=32.45  Aligned_cols=62  Identities=10%  Similarity=0.164  Sum_probs=46.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH  136 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y  136 (154)
                      .+.||-.+|+-|......+.+...  .+++.|+.+.-....++.+++|+..  + =+++++.+ |...
T Consensus        46 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~--~-Pt~~~~~~-G~~~  109 (128)
T 3ul3_B           46 VLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKS--L-PTIILLKN-KTML  109 (128)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCS--S-SEEEEEET-TEEE
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCC--c-CEEEEEEC-CEEE
Confidence            466999999999999888766543  2578998888777888889999853  2 36777754 5543

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=91.66  E-value=0.59  Score=29.69  Aligned_cols=74  Identities=14%  Similarity=0.126  Sum_probs=44.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEECCceEEEehHHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGW  144 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~  144 (154)
                      +.++|+-..|+.|.....++.+...   .=.+..+++....  .+++.+.+|.....+ =++ ++  +|+...|.+.+..
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~v-P~i-~~--~g~~i~~~~~l~~   77 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETV-PQI-FV--DQQHIGGYTDFAA   77 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCS-CEE-EE--TTEEEESSHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCcee-CeE-EE--CCEEEECHHHHHH
Confidence            3566777899999999999877432   2244555553321  235666777221222 244 44  4777888887766


Q ss_pred             HHH
Q 031708          145 GIT  147 (154)
Q Consensus       145 ilr  147 (154)
                      +++
T Consensus        78 ~~~   80 (85)
T 1ego_A           78 WVK   80 (85)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=91.65  E-value=0.82  Score=31.08  Aligned_cols=61  Identities=11%  Similarity=0.123  Sum_probs=45.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||--+|+-|......+.+.... ..+.|+.+.-....++.+.||+..  + =+++++. +|..
T Consensus        35 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~--~-Pt~~~~~-~G~~   96 (116)
T 3qfa_C           35 VVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKS--M-PTFQFFK-KGQK   96 (116)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCS--S-SEEEEES-SSSE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCcc--c-cEEEEEe-CCeE
Confidence            5668999999999999988776542 348888887777788889999853  2 3677764 4543

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=91.62  E-value=0.3  Score=33.04  Aligned_cols=61  Identities=13%  Similarity=0.037  Sum_probs=45.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCc
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPG  133 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G  133 (154)
                      -.+.||-.+|+.|......+.+...  .+++.|+.+.-....++.+.+|+..  + =++++++.+|
T Consensus        24 ~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~~~   86 (122)
T 3aps_A           24 WVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKA--Y-PSVKLYQYER   86 (122)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCS--S-SEEEEEEEEG
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCc--c-ceEEEEeCCC
Confidence            3678899999999999887766432  2468888887776778889999863  3 3777775443

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=91.59  E-value=0.29  Score=33.45  Aligned_cols=62  Identities=11%  Similarity=0.033  Sum_probs=45.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      -.+.||.-+|+.|......+.+..  ..+++.|+.+.-....++.+.+|+..  + =++++++++|.
T Consensus        38 ~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~~~~  101 (130)
T 2dml_A           38 WLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQG--F-PTIKIFGANKN  101 (130)
T ss_dssp             EEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCS--S-SEEEEESSCTT
T ss_pred             EEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCc--c-CEEEEEeCCCC
Confidence            367899999999999888776533  23458887777666777888898853  2 37888876554

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=91.58  E-value=0.51  Score=31.43  Aligned_cols=63  Identities=13%  Similarity=0.169  Sum_probs=42.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCC----------------------------cccHhHHHhcCCChh
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQS----------------------------QAAEPYLRLCGLDRE  120 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS----------------------------~~g~~lL~~~Gl~~e  120 (154)
                      .+.||...|+.|......+.+.-.  ...+.++.+..                            .....+.+.||+.. 
T Consensus        26 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-  104 (138)
T 4evm_A           26 YLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRS-  104 (138)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHTTCCS-
T ss_pred             EEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHcCccc-
Confidence            455889999999999988866443  34788887711                            11224566777643 


Q ss_pred             hccceEEEEECCceEE
Q 031708          121 DVLRRFLFVEGPGLYH  136 (154)
Q Consensus       121 ~~~~Sivlid~~G~~y  136 (154)
                       . -+++++|.+|++.
T Consensus       105 -~-P~~~lid~~G~i~  118 (138)
T 4evm_A          105 -Y-PTQAFIDKEGKLV  118 (138)
T ss_dssp             -S-SEEEEECTTCCEE
T ss_pred             -C-CeEEEECCCCcEE
Confidence             2 4788888888764

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=91.45  E-value=0.45  Score=31.37  Aligned_cols=61  Identities=13%  Similarity=0.229  Sum_probs=43.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+.|......+.+... .+.+.|..+.......+.+.+|+..  + =+++++. +|..
T Consensus        30 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   91 (113)
T 1ti3_A           30 VVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEA--M-PTFIFLK-DGKL   91 (113)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSS--T-TEEEEEE-TTEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCc--c-cEEEEEe-CCEE
Confidence            456899999999999887766443 2368888887766777888888753  2 2666665 4654

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=91.36  E-value=0.4  Score=35.19  Aligned_cols=63  Identities=11%  Similarity=0.125  Sum_probs=41.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCC-c----------------------ccHhHHHhcCCChhhccceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS-Q----------------------AAEPYLRLCGLDREDVLRRFL  127 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS-~----------------------~g~~lL~~~Gl~~e~~~~Siv  127 (154)
                      .+.||-.+|+.|......+.+.-.+ .+.|+.+.- .                      ....+.+.||+..  + -+.+
T Consensus        62 ll~F~a~~C~~C~~~~~~l~~l~~~-~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~-P~~~  137 (176)
T 3kh7_A           62 LVNVWGTWCPSCRVEHPELTRLAEQ-GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYG--A-PETY  137 (176)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHT-TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCS--S-CEEE
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCC--C-CeEE
Confidence            5668999999999999988876654 466666651 1                      1123344555532  2 3678


Q ss_pred             EEECCceEEE
Q 031708          128 FVEGPGLYHQ  137 (154)
Q Consensus       128 lid~~G~~y~  137 (154)
                      ++|.+|++..
T Consensus       138 lid~~G~i~~  147 (176)
T 3kh7_A          138 LIDKQGIIRH  147 (176)
T ss_dssp             EECTTCBEEE
T ss_pred             EECCCCeEEE
Confidence            8888887543

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=91.34  E-value=0.85  Score=31.24  Aligned_cols=60  Identities=3%  Similarity=-0.075  Sum_probs=46.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc-------CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD-------KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPG  133 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D-------r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G  133 (154)
                      .+.||--+|+-|......+.+..       ..+++.|+.+.-....++.+++++..  + =+++++..++
T Consensus        37 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~g~  103 (127)
T 3h79_A           37 FVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG--F-PTMRYYTRID  103 (127)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCS--S-SEEEEECSSC
T ss_pred             EEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCcc--C-CEEEEEeCCC
Confidence            67789999999999988877652       34679999998877888889999864  2 3777776533

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=91.31  E-value=0.31  Score=33.94  Aligned_cols=62  Identities=11%  Similarity=0.169  Sum_probs=40.2

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCC-----------------------cccHhHHHhcCCChhhccc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQS-----------------------QAAEPYLRLCGLDREDVLR  124 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS-----------------------~~g~~lL~~~Gl~~e~~~~  124 (154)
                      .+.||..+|+.|......+.+.-   ....+.|+.+..                       .....+.+.||+..  . -
T Consensus        32 lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~--~-P  108 (153)
T 2l5o_A           32 LINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV--Y-P  108 (153)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS--S-S
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc--c-C
Confidence            56788999999999888776532   223476665431                       11234566777642  2 4


Q ss_pred             eEEEEECCceE
Q 031708          125 RFLFVEGPGLY  135 (154)
Q Consensus       125 Sivlid~~G~~  135 (154)
                      ++++++.+|++
T Consensus       109 ~~~lid~~G~i  119 (153)
T 2l5o_A          109 TSVLIGKKGEI  119 (153)
T ss_dssp             EEEEECSSSCC
T ss_pred             eEEEECCCCcE
Confidence            78888888875

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=91.19  E-value=0.37  Score=32.51  Aligned_cols=66  Identities=17%  Similarity=0.201  Sum_probs=46.4

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCccc-----HhHHHhcCCChhhccceEEEEECCceEEEehHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-----EPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGG  143 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g-----~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl  143 (154)
                      ..++||-.+|+.|.....++.+...  .+.++.+.....     ..+.+.+|+..  + =++ ++  +|....+.+.+.
T Consensus        21 ~vv~f~a~~C~~C~~~~~~l~~~~~--~~~~v~v~~~~~~~~~~~~l~~~~~v~~--~-Pt~-~~--~g~~v~~~~~~~   91 (116)
T 2e7p_A           21 PVVVFSKTYCGYCNRVKQLLTQVGA--SYKVVELDELSDGSQLQSALAHWTGRGT--V-PNV-FI--GGKQIGGCDTVV   91 (116)
T ss_dssp             SEEEEECTTCHHHHHHHHHHHHHTC--CCEEEEGGGSTTHHHHHHHHHHHHSCCS--S-CEE-EE--TTEEEECHHHHH
T ss_pred             CEEEEECCCChhHHHHHHHHHHcCC--CeEEEEccCCCChHHHHHHHHHHhCCCC--c-CEE-EE--CCEEECChHHHH
Confidence            5788999999999999999988864  478888865443     34667788742  2 245 44  477676665543

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=91.18  E-value=0.63  Score=32.11  Aligned_cols=65  Identities=8%  Similarity=0.169  Sum_probs=41.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC----CCcEEEEEc--CCcc----------------------cHhHHHhcCCChhhc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK----YRKIKFCCL--QSQA----------------------AEPYLRLCGLDREDV  122 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr----~~r~~F~~i--QS~~----------------------g~~lL~~~Gl~~e~~  122 (154)
                      .+.||-..|+.|......+.+.-.    +..+.++.+  ....                      ..++.+.||+..  +
T Consensus        32 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~  109 (144)
T 1o73_A           32 FLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVES--I  109 (144)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCS--S
T ss_pred             EEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCCC--C
Confidence            466889999999999887766421    234555544  4321                      235666777642  2


Q ss_pred             cceEEEEE-CCceEEEe
Q 031708          123 LRRFLFVE-GPGLYHQA  138 (154)
Q Consensus       123 ~~Sivlid-~~G~~y~g  138 (154)
                       -++++++ .+|++...
T Consensus       110 -Pt~~lid~~~G~i~~~  125 (144)
T 1o73_A          110 -PTLITINADTGAIIGT  125 (144)
T ss_dssp             -SEEEEEETTTCCEEES
T ss_pred             -CEEEEEECCCCeEEec
Confidence             4788999 78886543

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=91.11  E-value=0.61  Score=30.74  Aligned_cols=60  Identities=12%  Similarity=0.100  Sum_probs=43.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      .+.||--+|+-|......+.+... .+++.|+.+.-....++.+.+|+..  + =+++++.+ |+
T Consensus        25 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~-G~   85 (107)
T 1gh2_A           25 VVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISA--T-PTFQFFRN-KV   85 (107)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCS--S-SEEEEEET-TE
T ss_pred             EEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCc--c-cEEEEEEC-Ce
Confidence            567899999999999888766432 2468888777666777888898853  2 36777654 54

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=91.06  E-value=0.78  Score=31.74  Aligned_cols=61  Identities=13%  Similarity=0.202  Sum_probs=45.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+.|......+.+.-. ...+.|+.+......++.+.||+..  + =+++++. +|+.
T Consensus        42 vv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~--~-Pt~~~~~-~G~~  103 (124)
T 1xfl_A           42 VVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQA--M-PTFMFLK-EGKI  103 (124)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCCc--c-CEEEEEE-CCEE
Confidence            567999999999999988876432 2368888887777778889999853  2 3666664 4654

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=91.02  E-value=0.62  Score=30.78  Aligned_cols=62  Identities=11%  Similarity=-0.019  Sum_probs=38.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH  136 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y  136 (154)
                      .+.||--+|+-|......+.+.... +++.|+.+.-....++.++||+..  + =+++++. +|+..
T Consensus        22 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~-~G~~~   84 (105)
T 4euy_A           22 LLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFT--G-PTVLLFY-NGKEI   84 (105)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------CC--C-CEEEEEE-TTEEE
T ss_pred             EEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCC--C-CEEEEEe-CCeEE
Confidence            5668999999999999888775433 478888887666777788888753  2 3777776 45543

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=90.99  E-value=0.98  Score=32.32  Aligned_cols=63  Identities=10%  Similarity=0.027  Sum_probs=39.9

Q ss_pred             EEEE-cCCCcchHHHHHHHHHHcC---CCcEEEEEcCCc---------------------ccHhHHHhcCCChh--hccc
Q 031708           72 VVIY-DGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQ---------------------AAEPYLRLCGLDRE--DVLR  124 (154)
Q Consensus        72 vVfY-DG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~---------------------~g~~lL~~~Gl~~e--~~~~  124 (154)
                      +.|| -..|+.|...+..+.+.-.   +..+.++.+...                     ...++.+.||+...  .. -
T Consensus        34 l~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~-P  112 (161)
T 3drn_A           34 LYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPA-R  112 (161)
T ss_dssp             EEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCC-C
T ss_pred             EEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCccc-c
Confidence            4455 8999999999887766331   223666655433                     23345667777420  02 4


Q ss_pred             eEEEEECCceE
Q 031708          125 RFLFVEGPGLY  135 (154)
Q Consensus       125 Sivlid~~G~~  135 (154)
                      +.+++|.+|++
T Consensus       113 ~~~lid~~G~i  123 (161)
T 3drn_A          113 ITFVIDKKGII  123 (161)
T ss_dssp             EEEEECTTSBE
T ss_pred             eEEEECCCCEE
Confidence            68889988886

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=90.93  E-value=0.94  Score=29.63  Aligned_cols=70  Identities=13%  Similarity=0.057  Sum_probs=44.6

Q ss_pred             eEEEEcC----CCcchHHHHHHHHHHcCCCcEEEEEcC-----C-ccc-HhHHHhcCCChh---hccceEEEEECCceEE
Q 031708           71 GVVIYDG----VCHLCHGGVKWVIRADKYRKIKFCCLQ-----S-QAA-EPYLRLCGLDRE---DVLRRFLFVEGPGLYH  136 (154)
Q Consensus        71 ~vVfYDG----~C~LC~~~V~fl~r~Dr~~r~~F~~iQ-----S-~~g-~~lL~~~Gl~~e---~~~~Sivlid~~G~~y  136 (154)
                      .+||.=.    .|++|.+..+++.++.-  .+.+.++.     . +.. +++.+..|...-   .+  =.+++ ++|++.
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~gi--~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tv--P~v~i-~~g~~i   76 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVKKQ--PFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTM--PQVFA-PDGSHI   76 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHTTC--CEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCS--CEEEC-TTSCEE
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHcCC--CEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCcc--CEEEE-ECCEEE
Confidence            4556666    89999999999988754  68899987     2 222 234445554310   12  13444 257788


Q ss_pred             EehHHHHHH
Q 031708          137 QASTGGGWG  145 (154)
Q Consensus       137 ~gSdAvl~i  145 (154)
                      .|.|-+..+
T Consensus        77 gG~d~l~~~   85 (87)
T 1aba_A           77 GGFDQLREY   85 (87)
T ss_dssp             ESHHHHHHH
T ss_pred             eCHHHHHHh
Confidence            999887654

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=90.80  E-value=0.7  Score=31.11  Aligned_cols=62  Identities=15%  Similarity=0.213  Sum_probs=43.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||..+|+.|......+.+.-. ...+.|+.+.-....++.+.||+..  + =++++.. +|..
T Consensus        37 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   99 (122)
T 2vlu_A           37 VVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEA--M-PTFLFMK-EGDV   99 (122)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCc--c-cEEEEEe-CCEE
Confidence            3678999999999999887766432 2238888777666777888999853  2 2666664 4654

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=90.67  E-value=0.66  Score=31.64  Aligned_cols=66  Identities=12%  Similarity=0.255  Sum_probs=45.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE---EEehH
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY---HQAST  140 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~---y~gSd  140 (154)
                      .+.||.-+|+.|......+.+... ...+.|+.+.-....++.+++|+..  + =++++.. +|+.   +.|..
T Consensus        34 vv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~-~G~~~~~~~G~~  103 (114)
T 2oe3_A           34 VIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTA--M-PTFVLGK-DGQLIGKIIGAN  103 (114)
T ss_dssp             EEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--B-SEEEEEE-TTEEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCc--c-cEEEEEe-CCeEEEEEeCCC
Confidence            577899999999999988876532 1237888777666677888998853  2 3666654 5665   44543

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=90.64  E-value=0.87  Score=31.52  Aligned_cols=65  Identities=11%  Similarity=0.006  Sum_probs=42.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC----CCcEEEEEcCCcc------------------------cHhHHHhcCCChhhc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK----YRKIKFCCLQSQA------------------------AEPYLRLCGLDREDV  122 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr----~~r~~F~~iQS~~------------------------g~~lL~~~Gl~~e~~  122 (154)
                      .+.||-..|+.|......+.+.-.    +..+.++.+....                        ...+.+.||+..  +
T Consensus        32 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~  109 (144)
T 1i5g_A           32 FFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKS--I  109 (144)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCS--S
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCCCC--C
Confidence            466888999999998887765321    1355555553221                        245667788742  3


Q ss_pred             cceEEEEE-CCceEEEe
Q 031708          123 LRRFLFVE-GPGLYHQA  138 (154)
Q Consensus       123 ~~Sivlid-~~G~~y~g  138 (154)
                       -++++++ .+|++...
T Consensus       110 -P~~~lid~~~G~i~~~  125 (144)
T 1i5g_A          110 -PTLVGVEADSGNIITT  125 (144)
T ss_dssp             -SEEEEEETTTCCEEES
T ss_pred             -CEEEEEECCCCcEEec
Confidence             4788999 78886543

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=90.62  E-value=1.8  Score=30.23  Aligned_cols=65  Identities=5%  Similarity=-0.021  Sum_probs=42.9

Q ss_pred             eEEEEcCCCcc--hHHHHHHHHHHc----CCCcEEEEEcCCccc-------------------------HhHHHhcCCCh
Q 031708           71 GVVIYDGVCHL--CHGGVKWVIRAD----KYRKIKFCCLQSQAA-------------------------EPYLRLCGLDR  119 (154)
Q Consensus        71 ~vVfYDG~C~L--C~~~V~fl~r~D----r~~r~~F~~iQS~~g-------------------------~~lL~~~Gl~~  119 (154)
                      .+.||-.+|+-  |......+.+.-    ....+.|+.+.....                         .++.+.||+..
T Consensus        37 ll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  116 (150)
T 3fw2_A           37 LINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYK  116 (150)
T ss_dssp             EEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCS
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCc
Confidence            45578999999  999988876643    223477766643322                         24566777642


Q ss_pred             hhccceEEEEECCceEEEe
Q 031708          120 EDVLRRFLFVEGPGLYHQA  138 (154)
Q Consensus       120 e~~~~Sivlid~~G~~y~g  138 (154)
                        . -+++++|.+|++...
T Consensus       117 --~-P~~~lid~~G~i~~~  132 (150)
T 3fw2_A          117 --I-PANILLSSDGKILAK  132 (150)
T ss_dssp             --S-SEEEEECTTSBEEEE
T ss_pred             --c-CeEEEECCCCEEEEc
Confidence              2 478899988886543

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=90.51  E-value=0.86  Score=30.44  Aligned_cols=61  Identities=15%  Similarity=0.204  Sum_probs=43.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+.|......+.+... ...+.|+.+.-.....+.+.+|+..  + =++++.. +|..
T Consensus        30 lv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   91 (112)
T 1syr_A           30 IVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITS--M-PTFKVYK-NGSS   91 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCc--c-cEEEEEE-CCcE
Confidence            466899999999999988866432 2358887777666677888998853  2 2666665 4654

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=90.46  E-value=0.88  Score=33.03  Aligned_cols=65  Identities=8%  Similarity=0.120  Sum_probs=42.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc----CCCcEEEEEcC--Cccc----------------------HhHHHhcCCChhhc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD----KYRKIKFCCLQ--SQAA----------------------EPYLRLCGLDREDV  122 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D----r~~r~~F~~iQ--S~~g----------------------~~lL~~~Gl~~e~~  122 (154)
                      .+.||-..|+.|......+.+.-    .+..+.++.+.  ....                      .++.+.||+..  +
T Consensus        52 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~--~  129 (165)
T 3s9f_A           52 FFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVES--I  129 (165)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCS--S
T ss_pred             EEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCCC--C
Confidence            35588999999999987776542    11355555553  3311                      56677888742  3


Q ss_pred             cceEEEEECC-ceEEEe
Q 031708          123 LRRFLFVEGP-GLYHQA  138 (154)
Q Consensus       123 ~~Sivlid~~-G~~y~g  138 (154)
                       -++++++.+ |++...
T Consensus       130 -Pt~~lid~~~G~iv~~  145 (165)
T 3s9f_A          130 -PTLIGLNADTGDTVTT  145 (165)
T ss_dssp             -SEEEEEETTTCCEEES
T ss_pred             -CEEEEEeCCCCEEEec
Confidence             488899987 886543

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=90.28  E-value=0.63  Score=30.88  Aligned_cols=61  Identities=11%  Similarity=0.120  Sum_probs=41.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCc-ccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~-~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||..+|+.|......+.+.-. ...+.|+.+.-. ...++.+.+|+..  + =++++ +.+|+.
T Consensus        28 lv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~--~-Pt~~~-~~~G~~   90 (111)
T 2pu9_C           28 VLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRV--V-PTFKI-LKENSV   90 (111)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSB--S-SEEEE-ESSSSE
T ss_pred             EEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCe--e-eEEEE-EeCCcE
Confidence            577999999999999888866432 234777777654 4567778888853  2 25444 455654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=90.27  E-value=0.64  Score=31.80  Aligned_cols=58  Identities=12%  Similarity=0.207  Sum_probs=42.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .+.||-.+|+.|......+.+.-.. +.+.|+.+.-....++.+.||+..  + =+++++++
T Consensus        27 lv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~~--~-Pt~~~~~~   85 (118)
T 2f51_A           27 LVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSS--I-PALFFVKK   85 (118)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--S-SEEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCCC--C-CEEEEEeC
Confidence            5678999999999988877664322 567888777666677888999853  2 36777764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=90.23  E-value=0.2  Score=34.41  Aligned_cols=60  Identities=10%  Similarity=0.118  Sum_probs=42.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC----CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK----YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPG  133 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr----~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G  133 (154)
                      .+.||--+|+-|......+.+...    .+++.|+.+.-.....+.+.|++..  + =++++++.++
T Consensus        29 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~g~   92 (133)
T 2dj3_A           29 LIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEG--F-PTIYFAPSGD   92 (133)
T ss_dssp             EEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSS--S-SEEEEECTTC
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCc--C-CEEEEEeCCC
Confidence            567889999999999887765422    2579999887665555556677743  2 3777876543

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=90.20  E-value=0.99  Score=31.40  Aligned_cols=65  Identities=8%  Similarity=0.083  Sum_probs=42.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC----CCcEEEEEc--CCcc----------------------cHhHHHhcCCChhhc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK----YRKIKFCCL--QSQA----------------------AEPYLRLCGLDREDV  122 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr----~~r~~F~~i--QS~~----------------------g~~lL~~~Gl~~e~~  122 (154)
                      .+.||-..|+.|......+.+.-.    ++.+.++.+  ....                      ..++.+.||+..  +
T Consensus        32 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~  109 (146)
T 1o8x_A           32 FFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVES--I  109 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCS--S
T ss_pred             EEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCCCC--C
Confidence            456888999999998877755321    135555544  4321                      245677788743  3


Q ss_pred             cceEEEEE-CCceEEEe
Q 031708          123 LRRFLFVE-GPGLYHQA  138 (154)
Q Consensus       123 ~~Sivlid-~~G~~y~g  138 (154)
                       -++++++ .+|++...
T Consensus       110 -Pt~~lid~~~G~i~~~  125 (146)
T 1o8x_A          110 -PTLIGVDADSGDVVTT  125 (146)
T ss_dssp             -SEEEEEETTTCCEEES
T ss_pred             -CEEEEEECCCCeEEEe
Confidence             4888999 78886543

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=90.16  E-value=0.43  Score=32.88  Aligned_cols=65  Identities=11%  Similarity=0.139  Sum_probs=38.0

Q ss_pred             eEEEEcCCCcchHHHHHHHHH------HcCCCcEEEEEcCCcccHhH----HH--------------------hcCCChh
Q 031708           71 GVVIYDGVCHLCHGGVKWVIR------ADKYRKIKFCCLQSQAAEPY----LR--------------------LCGLDRE  120 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r------~Dr~~r~~F~~iQS~~g~~l----L~--------------------~~Gl~~e  120 (154)
                      .+.||..+|+.|......+.+      .-++..+.++.+......+.    ++                    .||+.. 
T Consensus        31 ll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~-  109 (142)
T 3ewl_A           31 MLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRA-  109 (142)
T ss_dssp             EEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSCCCS-
T ss_pred             EEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcCCCC-
Confidence            455889999999998554433      11223476666643322221    11                    455532 


Q ss_pred             hccceEEEEECCceEEEe
Q 031708          121 DVLRRFLFVEGPGLYHQA  138 (154)
Q Consensus       121 ~~~~Sivlid~~G~~y~g  138 (154)
                       . -+++++|.+|++..+
T Consensus       110 -~-P~~~lid~~G~i~~~  125 (142)
T 3ewl_A          110 -T-PTIYLLDGRKRVILK  125 (142)
T ss_dssp             -S-SEEEEECTTCBEEEC
T ss_pred             -C-CeEEEECCCCCEEec
Confidence             2 478889888887654

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=90.05  E-value=0.29  Score=32.36  Aligned_cols=61  Identities=15%  Similarity=0.150  Sum_probs=44.2

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||.-+|+.|......+.+...  .+++.|+.+......++.+.||+..  + =++++.. +|..
T Consensus        28 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   90 (112)
T 1ep7_A           28 VVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITA--M-PTFHVYK-DGVK   90 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCB--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCc--c-cEEEEEE-CCeE
Confidence            677999999999999888866432  2368888887766778888898853  2 2666654 4654

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=90.00  E-value=0.58  Score=32.72  Aligned_cols=61  Identities=11%  Similarity=0.220  Sum_probs=44.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||.-+|+-|......+.+... .+.+.|+.+.-....++.+.||+..  + =+++++. +|..
T Consensus        41 vv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~--~-Pt~~i~~-~G~~  102 (125)
T 1r26_A           41 VAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQ--L-PTFIIAR-SGKM  102 (125)
T ss_dssp             EEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCc--c-cEEEEEe-CCeE
Confidence            678999999999999888766432 2458888887766778888999853  2 3666664 4654

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=89.99  E-value=1.4  Score=30.04  Aligned_cols=61  Identities=11%  Similarity=0.190  Sum_probs=44.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCC--c-EEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYR--K-IKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~--r-~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||-.+|+.|......+.+....-  + +.|+.+.-....++.+.+|+..  + =+++++. +|..
T Consensus        37 vv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~--~-Pt~~~~~-~G~~  100 (121)
T 2j23_A           37 VIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRA--M-PTFVFFK-NGQK  100 (121)
T ss_dssp             EEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCc--c-cEEEEEE-CCeE
Confidence            57788999999999999887755432  2 7888777666777888888853  2 3677665 4554

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=89.96  E-value=0.71  Score=32.01  Aligned_cols=65  Identities=12%  Similarity=0.152  Sum_probs=41.2

Q ss_pred             eEEEEcCCCcchHHHHHHHHH---H-c--CCCcEEEEEcCCcccHhH------------------------HHhcCCChh
Q 031708           71 GVVIYDGVCHLCHGGVKWVIR---A-D--KYRKIKFCCLQSQAAEPY------------------------LRLCGLDRE  120 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r---~-D--r~~r~~F~~iQS~~g~~l------------------------L~~~Gl~~e  120 (154)
                      .+.||-.+|+.|..++..+.+   . +  +...+.++.+......+.                        .+.||+.  
T Consensus        35 ll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~--  112 (142)
T 3eur_A           35 LLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLR--  112 (142)
T ss_dssp             EEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCCT--
T ss_pred             EEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcCCC--
Confidence            455889999999999887766   1 1  235677777754433221                        2344442  


Q ss_pred             hccceEEEEECCceEEEe
Q 031708          121 DVLRRFLFVEGPGLYHQA  138 (154)
Q Consensus       121 ~~~~Sivlid~~G~~y~g  138 (154)
                      .+ -+++++|.+|++..+
T Consensus       113 ~~-P~~~lid~~G~i~~~  129 (142)
T 3eur_A          113 AI-PTLYLLDKNKTVLLK  129 (142)
T ss_dssp             TC-SEEEEECTTCBEEEE
T ss_pred             cC-CeEEEECCCCcEEec
Confidence            23 478888988886553

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=89.93  E-value=0.75  Score=33.40  Aligned_cols=62  Identities=13%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||.-+|+.|......+.+.-.  .+++.|+.+......++.++||+..  + =+++++. +|+.
T Consensus        67 vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~-Pt~~~~~-~G~~  130 (155)
T 2ppt_A           67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQG--I-PAFILFH-KGRE  130 (155)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCc--C-CEEEEEe-CCeE
Confidence            3678999999999999887765432  3468888888777778889999853  2 3677765 4554

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=89.82  E-value=0.91  Score=31.28  Aligned_cols=61  Identities=10%  Similarity=0.059  Sum_probs=43.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc-----CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD-----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D-----r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||.-+|+.|......+.+..     ....+.|+.+.-.....+.+.||+..  + =+++++.+ |.+
T Consensus        38 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~-G~~  103 (140)
T 2dj1_A           38 LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSG--Y-PTIKILKK-GQA  103 (140)
T ss_dssp             EEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCS--S-SEEEEEET-TEE
T ss_pred             EEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCc--c-CeEEEEEC-CcE
Confidence            67788999999998887765532     12248888888777778889999853  2 36777753 543

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=89.74  E-value=0.39  Score=35.19  Aligned_cols=64  Identities=8%  Similarity=0.100  Sum_probs=39.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCC-----------------------------cccHhHHHhcCCC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQS-----------------------------QAAEPYLRLCGLD  118 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS-----------------------------~~g~~lL~~~Gl~  118 (154)
                      .+.||...|+.|......+.+.-.   +..+.|+.+..                             ....++.+.||+.
T Consensus        50 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  129 (196)
T 2ywi_A           50 VIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAA  129 (196)
T ss_dssp             EEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTCC
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCCC
Confidence            566889999999998877765331   22355555542                             1122345566653


Q ss_pred             hhhccceEEEEECCceEEE
Q 031708          119 REDVLRRFLFVEGPGLYHQ  137 (154)
Q Consensus       119 ~e~~~~Sivlid~~G~~y~  137 (154)
                      .  . -+++++|.+|++..
T Consensus       130 ~--~-P~~~lid~~G~i~~  145 (196)
T 2ywi_A          130 C--T-PDFYIFDRDLKCVY  145 (196)
T ss_dssp             E--E-SEEEEEETTCBEEE
T ss_pred             C--C-CeEEEEcCCCeEEE
Confidence            2  2 46788898887654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=89.69  E-value=0.61  Score=33.59  Aligned_cols=64  Identities=8%  Similarity=0.129  Sum_probs=42.4

Q ss_pred             eEEEE-cCCCcchHHHHHHH---HHHc--CCCcEEEEEcCCccc-----------HhHHHhcCCChhhccceEEEEECCc
Q 031708           71 GVVIY-DGVCHLCHGGVKWV---IRAD--KYRKIKFCCLQSQAA-----------EPYLRLCGLDREDVLRRFLFVEGPG  133 (154)
Q Consensus        71 ~vVfY-DG~C~LC~~~V~fl---~r~D--r~~r~~F~~iQS~~g-----------~~lL~~~Gl~~e~~~~Sivlid~~G  133 (154)
                      .+.|| -.+|+-|......+   .+..  ...++.++.+.....           .++.+.||+..  + =+++++|.+|
T Consensus        51 lv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~--~-Pt~~~~d~~G  127 (154)
T 2ju5_A           51 GLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTG--F-PELVFIDAEG  127 (154)
T ss_dssp             EEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCS--S-SEEEEECTTC
T ss_pred             EEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCC--C-CEEEEEcCCC
Confidence            34456 78999999998766   2211  124677777755332           36778888854  3 4888998878


Q ss_pred             eEEE
Q 031708          134 LYHQ  137 (154)
Q Consensus       134 ~~y~  137 (154)
                      ++..
T Consensus       128 ~~~~  131 (154)
T 2ju5_A          128 KQLA  131 (154)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            7654

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=89.64  E-value=1  Score=31.64  Aligned_cols=61  Identities=10%  Similarity=0.213  Sum_probs=46.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||--+|+.|......+.+..  ..+++.|+.+......++.+.||+..  + =+++++++ |+.
T Consensus        59 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~-G~~  121 (148)
T 3p2a_A           59 VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRS--I-PTIMLYRN-GKM  121 (148)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--S-SEEEEEET-TEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCc--c-CEEEEEEC-CeE
Confidence            56799999999999988776643  23578998888777888899999863  2 36777764 544

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=89.60  E-value=0.84  Score=29.17  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=37.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCC--CcEEEEEcCCc-ccHhHHHhcCCC
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKY--RKIKFCCLQSQ-AAEPYLRLCGLD  118 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~--~r~~F~~iQS~-~g~~lL~~~Gl~  118 (154)
                      +.++|+--.|+.|......+.+.-.+  ..+.+..+... ...++.+.+|+.
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~   54 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVK   54 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCC
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCC
Confidence            46889999999999999987765443  36788888753 355667888874

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=89.57  E-value=2.2  Score=31.88  Aligned_cols=58  Identities=12%  Similarity=0.201  Sum_probs=42.6

Q ss_pred             eEEEEcC-CCcchHHHHHHHHHHcC-CCcEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDG-VCHLCHGGVKWVIRADK-YRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG-~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .+.||+. +|+-|......+.+... .+++.|+-+.-..  ..++.+.||+..  + =++++..+
T Consensus        26 lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~~--~-Pt~~~~~~   87 (226)
T 1a8l_A           26 LIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDR--A-PATTITQD   87 (226)
T ss_dssp             EEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCS--S-SEEEEEET
T ss_pred             EEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCCc--C-ceEEEEcC
Confidence            4667888 99999999998877543 3578887776555  678889999872  3 36777654

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=89.50  E-value=0.91  Score=32.01  Aligned_cols=66  Identities=12%  Similarity=0.179  Sum_probs=40.7

Q ss_pred             EEEE-cCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcc-----------------------cHhHHHhcCCChhh--c
Q 031708           72 VVIY-DGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQA-----------------------AEPYLRLCGLDRED--V  122 (154)
Q Consensus        72 vVfY-DG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~-----------------------g~~lL~~~Gl~~e~--~  122 (154)
                      +.|| -..|+.|...+..+.+.-.   +..+.++.+....                       ..++.+.||+....  +
T Consensus        41 l~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~  120 (160)
T 1xvw_A           41 LVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGI  120 (160)
T ss_dssp             EEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTE
T ss_pred             EEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccccCCC
Confidence            3455 7889999999988877532   2356666654321                       33456677764221  1


Q ss_pred             -cceEEEEECCceEEE
Q 031708          123 -LRRFLFVEGPGLYHQ  137 (154)
Q Consensus       123 -~~Sivlid~~G~~y~  137 (154)
                       ..+.+++|.+|++..
T Consensus       121 p~~~~~lid~~G~i~~  136 (160)
T 1xvw_A          121 ANRGTFVVDRSGIIRF  136 (160)
T ss_dssp             ECSEEEEECTTSBEEE
T ss_pred             eeeeEEEECCCCeEEE
Confidence             126788888887643

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=89.44  E-value=1.2  Score=30.92  Aligned_cols=62  Identities=11%  Similarity=0.126  Sum_probs=46.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||.-+|+.|......+.+...  .+++.|+.+.......+.+.||+..  + =+++++. +|..
T Consensus        53 vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~-~G~~  116 (140)
T 1v98_A           53 TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRS--V-PTLVLFR-RGAP  116 (140)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCc--c-CEEEEEe-CCcE
Confidence            4678999999999999988866432  3469999888777778888998853  2 3666665 4654

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=89.25  E-value=0.84  Score=31.82  Aligned_cols=74  Identities=15%  Similarity=0.162  Sum_probs=48.1

Q ss_pred             eEEEEcCCCcchHHHHHHH------HHHcCCCcEEEEEcCC----cccHhHHHhcCCChhhccceEEEEECCceEE----
Q 031708           71 GVVIYDGVCHLCHGGVKWV------IRADKYRKIKFCCLQS----QAAEPYLRLCGLDREDVLRRFLFVEGPGLYH----  136 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl------~r~Dr~~r~~F~~iQS----~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y----  136 (154)
                      .+.||--+|+-|......+      .+.-.  .+.|+.+.-    ....++.+.||+..  + =+++++|.+|+..    
T Consensus        35 lv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~~~~~~l~~~~~v~~--~-Pt~~~~d~~G~~v~~~~  109 (134)
T 2fwh_A           35 MLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTANDAQDVALLKHLNVLG--L-PTILFFDGQGQEHPQAR  109 (134)
T ss_dssp             EEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCCHHHHHHHHHTTCCS--S-SEEEEECTTSCBCGGGC
T ss_pred             EEEEECCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCcchHHHHHHHcCCCC--C-CEEEEECCCCCEeeeee
Confidence            5678999999999976443      22222  377766654    45667888999853  3 4888888778752    


Q ss_pred             -Ee---hHHHHHHHHHc
Q 031708          137 -QA---STGGGWGITVN  149 (154)
Q Consensus       137 -~g---SdAvl~ilr~l  149 (154)
                       .|   .+.+...++.+
T Consensus       110 ~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A          110 VTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             BCSCCCHHHHHHHHHHC
T ss_pred             eeeccCHHHHHHHHHhc
Confidence             23   34555555544

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=89.15  E-value=0.98  Score=31.25  Aligned_cols=61  Identities=11%  Similarity=0.197  Sum_probs=44.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||--+|+-|......+.+.-. .+.+.|+.+.-....++.+.||+..  + =+++++. +|..
T Consensus        50 vv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~  111 (139)
T 3d22_A           50 LANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKA--T-PTFFFLR-DGQQ  111 (139)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCE--E-SEEEEEE-TTEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCCc--c-cEEEEEc-CCeE
Confidence            567899999999999888866432 2457888777766778889999853  2 3666664 4654

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.87  E-value=1  Score=30.65  Aligned_cols=62  Identities=6%  Similarity=0.027  Sum_probs=44.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||--+|+-|......+.+...   ...+.|+.+.-.....+.+.||+..  + =+++++. +|.+
T Consensus        25 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~   89 (126)
T 1x5e_A           25 WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINA--L-PTIYHCK-DGEF   89 (126)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCS--S-SEEEEEE-TTEE
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcc--c-CEEEEEe-CCeE
Confidence            4678899999999999887765432   1257787776666677888999853  2 3677774 4654

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=88.81  E-value=1  Score=34.29  Aligned_cols=64  Identities=9%  Similarity=0.062  Sum_probs=41.9

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCCc-----------------------------ccHhHHHhcCCC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQ-----------------------------AAEPYLRLCGLD  118 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~-----------------------------~g~~lL~~~Gl~  118 (154)
                      .+.||-..|+.|......+.+.-.   ...+.|+.+...                             ...++.+.||+.
T Consensus        63 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~  142 (218)
T 3u5r_E           63 LVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAA  142 (218)
T ss_dssp             EEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCC
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCC
Confidence            455788999999998888765432   233777666541                             123456677764


Q ss_pred             hhhccceEEEEECCceEEE
Q 031708          119 REDVLRRFLFVEGPGLYHQ  137 (154)
Q Consensus       119 ~e~~~~Sivlid~~G~~y~  137 (154)
                      .  . -+++++|.+|++..
T Consensus       143 ~--~-P~~~liD~~G~i~~  158 (218)
T 3u5r_E          143 C--T-PDFFLYDRERRLVY  158 (218)
T ss_dssp             E--E-SEEEEECTTCBEEE
T ss_pred             C--C-CeEEEECCCCcEEE
Confidence            3  2 47888988888653

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=88.75  E-value=0.94  Score=31.68  Aligned_cols=64  Identities=9%  Similarity=0.185  Sum_probs=40.9

Q ss_pred             eEEEEcCCCcchHHH-HHHHHHHc---CCCcEEEEEcCCc-----------------------------ccH----hHHH
Q 031708           71 GVVIYDGVCHLCHGG-VKWVIRAD---KYRKIKFCCLQSQ-----------------------------AAE----PYLR  113 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~-V~fl~r~D---r~~r~~F~~iQS~-----------------------------~g~----~lL~  113 (154)
                      .+.||-.+|+.|... +..+.+.-   +...+.|+.+...                             .+.    ++.+
T Consensus        32 lv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (158)
T 3eyt_A           32 VIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMA  111 (158)
T ss_dssp             EEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSCHHHH
T ss_pred             EEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhHHHHH
Confidence            355889999999995 77665543   2245888776521                             111    3566


Q ss_pred             hcCCChhhccceEEEEECCceEEE
Q 031708          114 LCGLDREDVLRRFLFVEGPGLYHQ  137 (154)
Q Consensus       114 ~~Gl~~e~~~~Sivlid~~G~~y~  137 (154)
                      .||+..  + -+++++|.+|++..
T Consensus       112 ~~~v~~--~-P~~~lid~~G~i~~  132 (158)
T 3eyt_A          112 AYQMRG--T-PSLLLIDKAGDLRA  132 (158)
T ss_dssp             HTTCCS--S-SEEEEECTTSEEEE
T ss_pred             HcCCCC--C-CEEEEECCCCCEEE
Confidence            777632  2 46888888888643

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=88.74  E-value=0.99  Score=31.68  Aligned_cols=61  Identities=16%  Similarity=0.179  Sum_probs=44.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||.-+|+-|......+.+.-.  .+++.|+.+.-.....+.+.+|+..  + =+++++.+ |..
T Consensus        28 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~-G~~   90 (140)
T 3hz4_A           28 VVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQG--T-PTFKFFCH-GRP   90 (140)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCE--E-SEEEEEET-TEE
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCc--C-CEEEEEeC-CcE
Confidence            677999999999998887766432  3458888877666778889999853  2 36777754 543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=88.73  E-value=1.5  Score=30.63  Aligned_cols=34  Identities=15%  Similarity=0.262  Sum_probs=23.3

Q ss_pred             eEEEEcCCCcchHHH-HHHHHHHc---CCCcEEEEEcC
Q 031708           71 GVVIYDGVCHLCHGG-VKWVIRAD---KYRKIKFCCLQ  104 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~-V~fl~r~D---r~~r~~F~~iQ  104 (154)
                      .+.||-.+|+-|..+ ...+.+.-   ++..+.|+.+.
T Consensus        34 lv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~   71 (160)
T 3lor_A           34 VVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLH   71 (160)
T ss_dssp             EEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEE
T ss_pred             EEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEe
Confidence            455889999999994 76665533   22348877775

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=88.72  E-value=0.26  Score=34.79  Aligned_cols=23  Identities=13%  Similarity=0.254  Sum_probs=19.2

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD   93 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D   93 (154)
                      .+.||..+|+.|......+.+.-
T Consensus        42 lv~F~a~~C~~C~~~~~~l~~l~   64 (164)
T 2h30_A           42 LIKFWASWCPLCLSELGQAEKWA   64 (164)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHH
Confidence            57788999999999988876654

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=88.52  E-value=3  Score=28.49  Aligned_cols=69  Identities=6%  Similarity=-0.050  Sum_probs=43.6

Q ss_pred             CeEEEEc-----CCCcchHHHHHHHHHHcCCCcEEEEEcCCc-cc-HhHHHhcCCChhhccceEEEEECCceEEEehHHH
Q 031708           70 PGVVIYD-----GVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AA-EPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG  142 (154)
Q Consensus        70 ~~vVfYD-----G~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g-~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAv  142 (154)
                      +.+||+-     -.|++|.+..+++..+.-  .+..+++... .. +++.+..|..  .+  =.+++  +|....|.|-+
T Consensus        16 ~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i--~~~~vdi~~~~~~~~~l~~~~g~~--~v--P~ifi--~g~~igG~d~l   87 (109)
T 1wik_A           16 SVMLFMKGNKQEAKCGFSKQILEILNSTGV--EYETFDILEDEEVRQGLKTFSNWP--TY--PQLYV--RGDLVGGLDIV   87 (109)
T ss_dssp             SEEEEESSTTTCCCSSTHHHHHHHHHHTCS--CEEEEESSSCHHHHHHHHHHHSCC--SS--CEEEC--SSSEEECHHHH
T ss_pred             CEEEEEecCCCCCCCchHHHHHHHHHHcCC--CeEEEECCCCHHHHHHHHHHhCCC--CC--CEEEE--CCEEEcCHHHH
Confidence            4677777     699999999999988753  6888888642 21 2333344532  11  13444  46678888865


Q ss_pred             HHHH
Q 031708          143 GWGI  146 (154)
Q Consensus       143 l~il  146 (154)
                      ..+.
T Consensus        88 ~~l~   91 (109)
T 1wik_A           88 KELK   91 (109)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.41  E-value=2.4  Score=30.04  Aligned_cols=68  Identities=19%  Similarity=0.224  Sum_probs=46.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccH----hHHHhcCCChhhccceEEEEECCceEEEehHHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAE----PYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGW  144 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~----~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~  144 (154)
                      +.+||+--.|+.|.....++.++.-  .+.++++... .+.    ++.+.+|+..  + =++ ++  +|+...|.+.+..
T Consensus        28 ~vvvf~~~~Cp~C~~~~~~L~~~~i--~~~~vdid~~~~~~~~~~~l~~~~g~~~--v-P~l-~i--~G~~igg~~~l~~   99 (130)
T 2cq9_A           28 CVVIFSKTSCSYCTMAKKLFHDMNV--NYKVVELDLLEYGNQFQDALYKMTGERT--V-PRI-FV--NGTFIGGATDTHR   99 (130)
T ss_dssp             SEEEEECSSCSHHHHHHHHHHHHTC--CCEEEETTTSTTHHHHHHHHHHHHSSCC--S-SEE-EE--TTEEEEEHHHHHH
T ss_pred             cEEEEEcCCChHHHHHHHHHHHcCC--CcEEEECcCCcCcHHHHHHHHHHhCCCC--c-CEE-EE--CCEEEcChHHHHH
Confidence            4788999999999999999988764  5778888643 112    2445667532  2 234 44  4777888776554


Q ss_pred             H
Q 031708          145 G  145 (154)
Q Consensus       145 i  145 (154)
                      +
T Consensus       100 ~  100 (130)
T 2cq9_A          100 L  100 (130)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=88.36  E-value=1.4  Score=35.70  Aligned_cols=60  Identities=17%  Similarity=0.191  Sum_probs=46.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCc--ccHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQ--AAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~--~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .++||.-.|+-|......+.+..+  ++++.|+-+...  ....+++.+|+..++. =++++++.
T Consensus       139 ~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~-P~~~~~~~  202 (361)
T 3uem_A          139 ILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEEC-PAVRLITL  202 (361)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTC-SEEEEEEC
T ss_pred             EEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCC-ccEEEEEc
Confidence            466889999999999888877543  467888888766  6788899999986555 47777764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=88.26  E-value=2.1  Score=29.59  Aligned_cols=73  Identities=10%  Similarity=0.051  Sum_probs=44.5

Q ss_pred             CCCCCCCC--eEEEEcCCCcchHHHHHHHHHHcCC---CcEEEEEcCCcc----c----------------------HhH
Q 031708           63 MEPSLLQP--GVVIYDGVCHLCHGGVKWVIRADKY---RKIKFCCLQSQA----A----------------------EPY  111 (154)
Q Consensus        63 ~~p~~~~~--~vVfYDG~C~LC~~~V~fl~r~Dr~---~r~~F~~iQS~~----g----------------------~~l  111 (154)
                      .+.....+  .+.||-.+|+-|......+.+.-.+   ..+.++.+....    .                      .++
T Consensus        26 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  105 (143)
T 4fo5_A           26 SFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESEL  105 (143)
T ss_dssp             CSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHH
T ss_pred             EHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHH
Confidence            44444444  4557899999999998888765432   357777664321    1                      123


Q ss_pred             HHhcCCChhhccceEEEEECCceEEEe
Q 031708          112 LRLCGLDREDVLRRFLFVEGPGLYHQA  138 (154)
Q Consensus       112 L~~~Gl~~e~~~~Sivlid~~G~~y~g  138 (154)
                      .+.||+.  .+ -+.+++|.+|++...
T Consensus       106 ~~~~~v~--~~-P~~~lid~~G~i~~~  129 (143)
T 4fo5_A          106 YKKYDLR--KG-FKNFLINDEGVIIAA  129 (143)
T ss_dssp             HHHTTGG--GC-CCEEEECTTSBEEEE
T ss_pred             HHHcCCC--CC-CcEEEECCCCEEEEc
Confidence            3445542  12 367888888876543

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=88.24  E-value=0.64  Score=31.64  Aligned_cols=47  Identities=6%  Similarity=0.044  Sum_probs=34.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcC
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCG  116 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~G  116 (154)
                      ..++|+--.|+.|.....++.+...+=.|..+++..+...++.+.+|
T Consensus        18 ~v~~f~~~~C~~C~~~~~~L~~l~~~i~~~~vdi~~~~~~el~~~~g   64 (100)
T 1wjk_A           18 VLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYK   64 (100)
T ss_dssp             EEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSS
T ss_pred             EEEEEeCCCCcchHHHHHHHHHhhhCCeEEEEECCCcchHHHHHHHC
Confidence            35667777899999999999866554466667777445577778888

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=88.17  E-value=2.1  Score=29.22  Aligned_cols=71  Identities=10%  Similarity=0.105  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHH-Hhc-CCChhhccceEEEEECCceEEEehHHHHHH
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYL-RLC-GLDREDVLRRFLFVEGPGLYHQASTGGGWG  145 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL-~~~-Gl~~e~~~~Sivlid~~G~~y~gSdAvl~i  145 (154)
                      .+.+||.=-.|++|.+...++.++.-  .+..+++... ...+.+ +.. |..  .+ =. +++  +|++..|.+-+..+
T Consensus        16 ~~v~vy~~~~Cp~C~~ak~~L~~~~i--~y~~idI~~~~~~~~~l~~~~~g~~--~v-P~-ifi--~g~~igG~d~l~~~   87 (99)
T 3qmx_A           16 AKIEIYTWSTCPFCMRALALLKRKGV--EFQEYCIDGDNEAREAMAARANGKR--SL-PQ-IFI--DDQHIGGCDDIYAL   87 (99)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHHTC--CCEEEECTTCHHHHHHHHHHTTTCC--CS-CE-EEE--TTEEEESHHHHHHH
T ss_pred             CCEEEEEcCCChhHHHHHHHHHHCCC--CCEEEEcCCCHHHHHHHHHHhCCCC--CC-CE-EEE--CCEEEeChHHHHHH
Confidence            46788889999999999999988764  5778888543 222323 333 432  12 12 344  47888999987766


Q ss_pred             HH
Q 031708          146 IT  147 (154)
Q Consensus       146 lr  147 (154)
                      .+
T Consensus        88 ~~   89 (99)
T 3qmx_A           88 DG   89 (99)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=88.12  E-value=0.76  Score=35.59  Aligned_cols=59  Identities=14%  Similarity=0.139  Sum_probs=45.6

Q ss_pred             CeEEEEcC--------CCcchHHHHHHHHHHcC--C-----CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           70 PGVVIYDG--------VCHLCHGGVKWVIRADK--Y-----RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        70 ~~vVfYDG--------~C~LC~~~V~fl~r~Dr--~-----~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      ..+|+|..        +|+.|....--+.+...  .     +++.|+-+.-...+++..+|||.-  + =+++++.+
T Consensus        39 ~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~~I~s--i-Ptl~~F~~  112 (178)
T 3ga4_A           39 FNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQN--V-PHLVVYPP  112 (178)
T ss_dssp             EEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHTTCCS--S-CEEEEECC
T ss_pred             cEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHHHcCCCC--C-CEEEEEcC
Confidence            46888888        89999998877765442  1     789999998888999999999854  2 36777754

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=88.05  E-value=1.2  Score=31.84  Aligned_cols=22  Identities=5%  Similarity=0.197  Sum_probs=16.6

Q ss_pred             eEEEEcCC-CcchHHHHHHHHHH
Q 031708           71 GVVIYDGV-CHLCHGGVKWVIRA   92 (154)
Q Consensus        71 ~vVfYDG~-C~LC~~~V~fl~r~   92 (154)
                      .+.||-++ |+.|...+..+.+.
T Consensus        48 vl~F~~~~~C~~C~~~~~~l~~l   70 (167)
T 2jsy_A           48 IISVIPSIDTGVCDAQTRRFNEE   70 (167)
T ss_dssp             EEEECSCSTTSHHHHTHHHHHHH
T ss_pred             EEEEecCCCCCchHHHHHHHHHH
Confidence            45567787 99999988877653

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=88.01  E-value=2.6  Score=27.84  Aligned_cols=70  Identities=16%  Similarity=0.158  Sum_probs=46.8

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCc----cc-HhHHHhcCCChhhccceEEEEECCceEEEehHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQ----AA-EPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGG  143 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~----~g-~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl  143 (154)
                      +.++|+=..|+.|.....++.++.-. +.+.++++...    .. +.+.+.+|...  + =++ ++  +|....|.+.+.
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~--v-P~i-~~--~g~~i~g~~~~~   86 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGART--V-PRV-FI--GKECIGGCTDLE   86 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCC--S-CEE-EE--TTEEEESHHHHH
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCC--c-CeE-EE--CCEEEeccHHHH
Confidence            57888889999999999999886542 23899998653    11 23445666532  2 233 44  477788887665


Q ss_pred             HH
Q 031708          144 WG  145 (154)
Q Consensus       144 ~i  145 (154)
                      .+
T Consensus        87 ~~   88 (105)
T 1kte_A           87 SM   88 (105)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=87.97  E-value=0.43  Score=37.52  Aligned_cols=34  Identities=15%  Similarity=0.045  Sum_probs=24.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcE--EEEEc
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKI--KFCCL  103 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~--~F~~i  103 (154)
                      ..++|+|=.|+.|..+..-+.+.-..+++  ++.++
T Consensus       100 ~v~~F~D~~Cp~C~~~~~~l~~~~~~g~v~v~~~~~  135 (241)
T 1v58_A          100 IVYVFADPFCPYCKQFWQQARPWVDSGKVQLRTLLV  135 (241)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHhCCcEEEEEEEC
Confidence            36779999999999998887764444545  44444

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=87.95  E-value=2.7  Score=29.55  Aligned_cols=34  Identities=12%  Similarity=0.130  Sum_probs=24.5

Q ss_pred             eEEEEcCCCc-chHHHHHHHHHHcCC-C-----cEEEEEcC
Q 031708           71 GVVIYDGVCH-LCHGGVKWVIRADKY-R-----KIKFCCLQ  104 (154)
Q Consensus        71 ~vVfYDG~C~-LC~~~V~fl~r~Dr~-~-----r~~F~~iQ  104 (154)
                      .+.||-.+|+ .|......+.+.-.+ +     ++.++.+.
T Consensus        39 ll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is   79 (172)
T 2k6v_A           39 LLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVS   79 (172)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEE
T ss_pred             EEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEE
Confidence            4557899999 599999888775432 1     57777765

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=87.65  E-value=1.4  Score=29.91  Aligned_cols=69  Identities=6%  Similarity=-0.036  Sum_probs=44.4

Q ss_pred             CeEEEEc-----CCCcchHHHHHHHHHHcCCCcEEEEEcCCc-cc-HhHHHhcCCChhhccceEEEEECCceEEEehHHH
Q 031708           70 PGVVIYD-----GVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AA-EPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG  142 (154)
Q Consensus        70 ~~vVfYD-----G~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g-~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAv  142 (154)
                      +.+||+-     -.|++|.+...++.++.-  .+..+++... .. +++.+.+|...  + =. +++  +|....|.|-+
T Consensus        18 ~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i--~~~~vdi~~~~~~~~~l~~~~g~~~--v-P~-v~i--~g~~igg~d~~   89 (105)
T 2yan_A           18 SVMLFMKGNKQEAKCGFSKQILEILNSTGV--EYETFDILEDEEVRQGLKAYSNWPT--Y-PQ-LYV--KGELVGGLDIV   89 (105)
T ss_dssp             SEEEEESBCSSSBCTTHHHHHHHHHHHHTC--CCEEEEGGGCHHHHHHHHHHHTCCS--S-CE-EEE--TTEEEECHHHH
T ss_pred             CEEEEEecCCCCCCCccHHHHHHHHHHCCC--CeEEEECCCCHHHHHHHHHHHCCCC--C-Ce-EEE--CCEEEeChHHH
Confidence            4666666     699999999999988753  5777888542 21 22334455421  2 12 344  47888999987


Q ss_pred             HHHH
Q 031708          143 GWGI  146 (154)
Q Consensus       143 l~il  146 (154)
                      ..+.
T Consensus        90 ~~l~   93 (105)
T 2yan_A           90 KELK   93 (105)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=87.40  E-value=2.2  Score=29.00  Aligned_cols=69  Identities=17%  Similarity=0.076  Sum_probs=45.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCC-----cccHhHHHh-cCCChhhccceEEEEECCceEEEehHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS-----QAAEPYLRL-CGLDREDVLRRFLFVEGPGLYHQASTGGG  143 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS-----~~g~~lL~~-~Gl~~e~~~~Sivlid~~G~~y~gSdAvl  143 (154)
                      +.+||.--.|+.|.+...++.++.-  .+.++.+..     +..++.+.. .|...  + =.+ ++  +|++..|.|-+.
T Consensus        20 ~v~vy~~~~Cp~C~~~~~~L~~~~i--~~~~~di~~~~~~~~~~~~~l~~~~g~~t--v-P~i-fi--~g~~igG~~~~~   91 (113)
T 3rhb_A           20 TVVIYSKTWCSYCTEVKTLFKRLGV--QPLVVELDQLGPQGPQLQKVLERLTGQHT--V-PNV-FV--CGKHIGGCTDTV   91 (113)
T ss_dssp             SEEEEECTTCHHHHHHHHHHHHTTC--CCEEEEGGGSTTHHHHHHHHHHHHHSCCS--S-CEE-EE--TTEEEESHHHHH
T ss_pred             CEEEEECCCChhHHHHHHHHHHcCC--CCeEEEeecCCCChHHHHHHHHHHhCCCC--c-CEE-EE--CCEEEcCcHHHH
Confidence            4778888999999999999988653  577888864     222333433 35421  2 133 44  578889998776


Q ss_pred             HHH
Q 031708          144 WGI  146 (154)
Q Consensus       144 ~il  146 (154)
                      .+.
T Consensus        92 ~~~   94 (113)
T 3rhb_A           92 KLN   94 (113)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=87.36  E-value=2.8  Score=30.20  Aligned_cols=22  Identities=9%  Similarity=0.093  Sum_probs=17.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHH
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRA   92 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~   92 (154)
                      .+.||-.+|+.|......+.+.
T Consensus        63 lv~F~a~~C~~C~~~~~~l~~l   84 (183)
T 3lwa_A           63 ILNAWGQWCAPCRSESDDLQII   84 (183)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCcCHhHHHHHHHHHHH
Confidence            4568899999999988877653

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=87.12  E-value=0.72  Score=33.76  Aligned_cols=33  Identities=15%  Similarity=0.283  Sum_probs=21.1

Q ss_pred             EEEEcCC-CcchHHHHHHHHHHcCCCcEEEEEcC
Q 031708           72 VVIYDGV-CHLCHGGVKWVIRADKYRKIKFCCLQ  104 (154)
Q Consensus        72 vVfYDG~-C~LC~~~V~fl~r~Dr~~r~~F~~iQ  104 (154)
                      +.||-+. |+.|...+..+.+.-.+..+.|+.+.
T Consensus        49 l~F~~t~~C~~C~~~~~~l~~l~~~~~v~vv~Is   82 (175)
T 1xvq_A           49 LNIFPSVDTPVCATSVRTFDERAAASGATVLCVS   82 (175)
T ss_dssp             EEECSCCCSSCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEeCCCCchHHHHHHHHHHHHhhcCCEEEEEE
Confidence            4455677 99999998877664322445555553

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.01  E-value=1.1  Score=31.22  Aligned_cols=62  Identities=6%  Similarity=-0.008  Sum_probs=44.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC--C-CcEEEEEcCCcccHhHHHhcCCCh-----hhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK--Y-RKIKFCCLQSQAAEPYLRLCGLDR-----EDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~-~r~~F~~iQS~~g~~lL~~~Gl~~-----e~~~~Sivlid~~G~~  135 (154)
                      .+.||--+|+-|......+.+.-.  . .++.|+.+.-....++.+.+++..     .-.  +++++. +|..
T Consensus        30 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~~P--t~~~~~-~G~~   99 (137)
T 2dj0_A           30 IVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLP--TLILFQ-GGKE   99 (137)
T ss_dssp             EEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSCSS--EEEEES-SSSE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCCCC--EEEEEE-CCEE
Confidence            678999999999988877755322  2 379999998877788889999861     223  676664 4553

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=86.91  E-value=1.7  Score=31.89  Aligned_cols=69  Identities=10%  Similarity=0.094  Sum_probs=42.5

Q ss_pred             CeEEEEcC-----CCcchHHHHHHHHHHcCCCcEEEEEcCC-cccH-hHHHhcCCChhhccceEEEEECCceEEEehHHH
Q 031708           70 PGVVIYDG-----VCHLCHGGVKWVIRADKYRKIKFCCLQS-QAAE-PYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG  142 (154)
Q Consensus        70 ~~vVfYDG-----~C~LC~~~V~fl~r~Dr~~r~~F~~iQS-~~g~-~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAv  142 (154)
                      +.+||.=|     .|++|.+..+++.++.-  .+..+++.. +..+ ++.+..|..  .+  =.+++  +|.+..|.|-+
T Consensus        36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv--~y~~vdI~~d~~~~~~L~~~~G~~--tv--P~VfI--~G~~iGG~d~l  107 (135)
T 2wci_A           36 PILLYMKGSPKLPSCGFSAQAVQALAACGE--RFAYVDILQNPDIRAELPKYANWP--TF--PQLWV--DGELVGGCDIV  107 (135)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHTTCS--CCEEEEGGGCHHHHHHHHHHHTCC--SS--CEEEE--TTEEEESHHHH
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHcCC--ceEEEECCCCHHHHHHHHHHHCCC--Cc--CEEEE--CCEEEEChHHH
Confidence            34555553     89999999999987753  578888853 2222 233334542  12  13455  47788888877


Q ss_pred             HHHH
Q 031708          143 GWGI  146 (154)
Q Consensus       143 l~il  146 (154)
                      ..+.
T Consensus       108 ~~l~  111 (135)
T 2wci_A          108 IEMY  111 (135)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=86.81  E-value=1.4  Score=27.77  Aligned_cols=63  Identities=13%  Similarity=0.139  Sum_probs=40.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCC-cccHhHHHhcCCChhhccceEEEEECCceEEEehH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS-QAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQAST  140 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS-~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSd  140 (154)
                      +.++|+--.|+.|.....++.++.  -.+..+++.. +...+.++.+|+..  + =++ ++  +|+...|.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~~~--i~~~~vdi~~~~~~~~~~~~~g~~~--v-P~~-~~--~g~~~~g~~   65 (81)
T 1h75_A            2 RITIYTRNDCVQCHATKRAMENRG--FDFEMINVDRVPEAAEALRAQGFRQ--L-PVV-IA--GDLSWSGFR   65 (81)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTT--CCCEEEETTTCHHHHHHHHHTTCCS--S-CEE-EE--TTEEEESCC
T ss_pred             EEEEEcCCCChhHHHHHHHHHHCC--CCeEEEECCCCHHHHHHHHHhCCCc--c-CEE-EE--CCEEEecCC
Confidence            467888899999999999998764  3677888864 23333344566532  2 133 33  356566544

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=86.61  E-value=2.4  Score=28.41  Aligned_cols=62  Identities=15%  Similarity=0.201  Sum_probs=42.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcc----cHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQA----AEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~----g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      -.+.||-.+|+.|......+.+.-.  ..++.++.+....    ..++.+.+|+..  + =+++++.+ |..
T Consensus        32 ~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~--~-Pt~~~~~~-G~~   99 (118)
T 1zma_A           32 ATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPT--V-PGFVHITD-GQI   99 (118)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCS--S-CEEEEEET-TEE
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCC--C-CeEEEEEC-CEE
Confidence            3678999999999998877765432  3578999776532    235667888753  2 36777764 543

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=86.60  E-value=0.37  Score=40.13  Aligned_cols=34  Identities=12%  Similarity=0.224  Sum_probs=25.7

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEE
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCC  102 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~  102 (154)
                      ...++|+|=.||+|.+.-..+.+.-.+.++++..
T Consensus       149 ~~I~vFtDp~CPYCkkl~~~l~~~l~~~~Vr~i~  182 (273)
T 3tdg_A          149 KILYIVSDPMCPHCQKELTKLRDHLKENTVRMVV  182 (273)
T ss_dssp             CEEEEEECTTCHHHHHHHHTHHHHHHHCEEEEEE
T ss_pred             eEEEEEECcCChhHHHHHHHHHHHhhCCcEEEEE
Confidence            4579999999999999988887433346666654

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=86.45  E-value=2.1  Score=29.91  Aligned_cols=63  Identities=11%  Similarity=-0.017  Sum_probs=40.7

Q ss_pred             CCCcchHHHHHHHHHHcCCCcEEEEEcCC-cccHhHHHh-cCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708           77 GVCHLCHGGVKWVIRADKYRKIKFCCLQS-QAAEPYLRL-CGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT  147 (154)
Q Consensus        77 G~C~LC~~~V~fl~r~Dr~~r~~F~~iQS-~~g~~lL~~-~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr  147 (154)
                      -.|++|.+..+++..+.-  .+...++.. +..++.|.. .|..  .+  =.+++  +|.+..|.|-+..+.+
T Consensus        29 ~~Cp~C~~ak~~L~~~gi--~y~~~di~~d~~~~~~l~~~~g~~--tv--P~ifi--~g~~iGG~d~l~~l~~   93 (111)
T 3zyw_A           29 PRCGFSKQMVEILHKHNI--QFSSFDIFSDEEVRQGLKAYSSWP--TY--PQLYV--SGELIGGLDIIKELEA   93 (111)
T ss_dssp             BSSHHHHHHHHHHHHTTC--CCEEEEGGGCHHHHHHHHHHHTCC--SS--CEEEE--TTEEEECHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHcCC--CeEEEECcCCHHHHHHHHHHHCCC--CC--CEEEE--CCEEEecHHHHHHHHH
Confidence            589999999999988754  577788753 333333333 2432  12  13455  4788899998777654

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=86.24  E-value=0.14  Score=33.08  Aligned_cols=61  Identities=15%  Similarity=0.162  Sum_probs=43.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCC--CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKY--RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~--~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      -.+.||..+|+.|......+.+....  +++.|+.+......++.+.+|+..  . =+++++. +|.
T Consensus        22 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~-~g~   84 (106)
T 2yj7_A           22 VLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRS--I-PTLLLFK-NGQ   84 (106)
Confidence            36788999999999998887664432  368888887766667778888753  2 2566653 454

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=85.90  E-value=3.3  Score=29.96  Aligned_cols=71  Identities=10%  Similarity=0.029  Sum_probs=41.9

Q ss_pred             CeEEEEcC-----CCcchHHHHHHHHHHcCCCcEEEEEcCC-cccHhHHHh-cCCChhhccceEEEEECCceEEEehHHH
Q 031708           70 PGVVIYDG-----VCHLCHGGVKWVIRADKYRKIKFCCLQS-QAAEPYLRL-CGLDREDVLRRFLFVEGPGLYHQASTGG  142 (154)
Q Consensus        70 ~~vVfYDG-----~C~LC~~~V~fl~r~Dr~~r~~F~~iQS-~~g~~lL~~-~Gl~~e~~~~Sivlid~~G~~y~gSdAv  142 (154)
                      +.+||-=|     .|++|.+.++.+..+.- ..+....+.. +.-++.|.. .|-..  + = -+||  +|+...|.|-+
T Consensus        21 ~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv-~~~~~~~v~~~~~~r~~l~~~sg~~T--v-P-qIFI--~g~~IGG~Ddl   93 (118)
T 2wul_A           21 KVVVFLKGTPEQPQCGFSNAVVQILRLHGV-RDYAAYNVLDDPELRQGIKDYSNWPT--I-P-QVYL--NGEFVGGCDIL   93 (118)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHHTTC-CSCEEEETTSCHHHHHHHHHHHTCCS--S-C-EEEE--TTEEEECHHHH
T ss_pred             CEEEEEcCCCCCCCCHHHHHHHHHHHHhCC-cCeEeecccCCHHHHHHHHHhccCCC--C-C-eEeE--CCEEECCHHHH
Confidence            34555566     49999999999877643 2366666643 322333333 23221  2 1 2466  47888999987


Q ss_pred             HHHHH
Q 031708          143 GWGIT  147 (154)
Q Consensus       143 l~ilr  147 (154)
                      ..+.+
T Consensus        94 ~~l~~   98 (118)
T 2wul_A           94 LQMHQ   98 (118)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=85.81  E-value=5.7  Score=26.16  Aligned_cols=72  Identities=8%  Similarity=-0.104  Sum_probs=46.3

Q ss_pred             CeEEEEcCCCcch------HHHHHHHHHHcCCCcEEEEEcCCc-ccH-hHHHhcCCChhhccceEEEEECCceEEEehHH
Q 031708           70 PGVVIYDGVCHLC------HGGVKWVIRADKYRKIKFCCLQSQ-AAE-PYLRLCGLDREDVLRRFLFVEGPGLYHQASTG  141 (154)
Q Consensus        70 ~~vVfYDG~C~LC------~~~V~fl~r~Dr~~r~~F~~iQS~-~g~-~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdA  141 (154)
                      +.+||.=..|++|      .+..+++..+.-  .+...++... ..+ ++.+..|.+...+  =.+++  +|.+..|.|.
T Consensus         3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i--~~~~~di~~~~~~~~~l~~~~g~~~~~v--P~ifi--~g~~igG~d~   76 (93)
T 1t1v_A            3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRI--QYQLVDISQDNALRDEMRTLAGNPKATP--PQIVN--GNHYCGDYEL   76 (93)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHHTTC--CCEEEETTSCHHHHHHHHHHTTCTTCCS--CEEEE--TTEEEEEHHH
T ss_pred             CEEEEEcCCCCCchhhHHHHHHHHHHHHCCC--ceEEEECCCCHHHHHHHHHHhCCCCCCC--CEEEE--CCEEEeCHHH
Confidence            5677888899999      888888876543  5888888643 222 3444556322222  13455  4677889998


Q ss_pred             HHHHHH
Q 031708          142 GGWGIT  147 (154)
Q Consensus       142 vl~ilr  147 (154)
                      +..+.+
T Consensus        77 l~~l~~   82 (93)
T 1t1v_A           77 FVEAVE   82 (93)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            877644

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=85.71  E-value=3.2  Score=31.79  Aligned_cols=70  Identities=11%  Similarity=0.056  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHH
Q 031708           68 LQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWG  145 (154)
Q Consensus        68 ~~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~i  145 (154)
                      ..+.+||.-..|++|.+..+++.++.-  .+...++... ..+++.+.+|..  .+ = .+++  +|+...|++.+...
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~~i--~~~~~~i~~~~~~~~l~~~~g~~--~v-P-~~~~--~g~~i~g~~~i~~~  239 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDKGL--SFEEIILGHDATIVSVRAVSGRT--TV-P-QVFI--GGKHIGGSDDLEKY  239 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHTC--CCEEEETTTTCCHHHHHHHTCCS--SS-C-EEEE--TTEEEESHHHHHHC
T ss_pred             cceEEEEECCCChHHHHHHHHHHHcCC--ceEEEECCCchHHHHHHHHhCCC--Cc-C-EEEE--CCEEEECHHHHHHH
Confidence            345788888999999999999988753  6778888543 334555566642  12 1 2344  46778899987654

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=85.59  E-value=3.2  Score=29.97  Aligned_cols=68  Identities=6%  Similarity=0.092  Sum_probs=45.9

Q ss_pred             eEEEE-cCCCcchHHHHHHHHHH--cCCCcEEEEEcCCccc--HhHHHhcCCChhhccceEEEEECCceEEEehH
Q 031708           71 GVVIY-DGVCHLCHGGVKWVIRA--DKYRKIKFCCLQSQAA--EPYLRLCGLDREDVLRRFLFVEGPGLYHQAST  140 (154)
Q Consensus        71 ~vVfY-DG~C~LC~~~V~fl~r~--Dr~~r~~F~~iQS~~g--~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSd  140 (154)
                      .+|+| -..|+-|......+.+.  +.+-.+.+++++....  .++.+.+|+.-+-+  +++++.++..++..|.
T Consensus        27 vvi~khatwCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sP--q~il~k~G~~v~~~SH   99 (112)
T 3iv4_A           27 VFVLKHSETCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESP--QAFYFVNGEMVWNRDH   99 (112)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSS--EEEEEETTEEEEEEEG
T ss_pred             EEEEEECCcCHhHHHHHHHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCC--eEEEEECCEEEEEeec
Confidence            34444 66999999988877665  3345788888876322  23678999975555  7888876555565443

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=85.54  E-value=0.53  Score=34.83  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHH
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRA   92 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~   92 (154)
                      ...++|+|=.|++|.+....+.+.
T Consensus        16 ~~vv~f~D~~Cp~C~~~~~~l~~l   39 (147)
T 3gv1_A           16 LKVAVFSDPDCPFCKRLEHEFEKM   39 (147)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHTTC
T ss_pred             EEEEEEECCCChhHHHHHHHHhhc
Confidence            357899999999999999988765

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=85.44  E-value=2.7  Score=29.36  Aligned_cols=71  Identities=13%  Similarity=0.105  Sum_probs=47.0

Q ss_pred             CeEEEEcCCCcchHHH-HHHHHHHcCC-CcEEEEEcCCcc-----cHhHHHhcCCChhhccceEEEEECCceEEEehHHH
Q 031708           70 PGVVIYDGVCHLCHGG-VKWVIRADKY-RKIKFCCLQSQA-----AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG  142 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~-V~fl~r~Dr~-~r~~F~~iQS~~-----g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAv  142 (154)
                      +.+||+-..|+.|... ..++.+.... -.+.++++....     .+++.+.+|...  + =+ +++  +|+...|.|-+
T Consensus        26 ~Vvvf~~~~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~t--v-P~-vfi--~g~~igG~d~l   99 (118)
T 3c1r_A           26 EIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRT--V-PN-IYI--NGKHIGGNDDL   99 (118)
T ss_dssp             SEEEEECSSCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCS--S-CE-EEE--TTEEEESHHHH
T ss_pred             cEEEEEcCCCcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhCCCC--c-CE-EEE--CCEEEEcHHHH
Confidence            5778888999999999 8888766421 367788886432     123445667532  2 13 344  47788899887


Q ss_pred             HHHH
Q 031708          143 GWGI  146 (154)
Q Consensus       143 l~il  146 (154)
                      ..+.
T Consensus       100 ~~l~  103 (118)
T 3c1r_A          100 QELR  103 (118)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=85.38  E-value=0.76  Score=33.28  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=24.9

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC-CC--cEEEEEc
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK-YR--KIKFCCL  103 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr-~~--r~~F~~i  103 (154)
                      ..++|+|-.|+.|..+...+.+.-. .+  ++.|..+
T Consensus        25 ~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~   61 (175)
T 3gyk_A           25 TVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREW   61 (175)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            4678999999999999988876532 33  4555553

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=85.32  E-value=1.8  Score=32.29  Aligned_cols=33  Identities=6%  Similarity=0.017  Sum_probs=21.5

Q ss_pred             EEEE-cCCCcchHHHHHHHHHHc---CCCcEEEEEcC
Q 031708           72 VVIY-DGVCHLCHGGVKWVIRAD---KYRKIKFCCLQ  104 (154)
Q Consensus        72 vVfY-DG~C~LC~~~V~fl~r~D---r~~r~~F~~iQ  104 (154)
                      +.|| -..|+.|..+...+.+.-   .+..+.|+.+.
T Consensus        41 l~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is   77 (202)
T 1uul_A           41 LFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACS   77 (202)
T ss_dssp             EEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEE
T ss_pred             EEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            3455 679999999988776532   12346666554

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=85.12  E-value=2  Score=26.34  Aligned_cols=64  Identities=16%  Similarity=0.087  Sum_probs=40.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHhcCCChhhccceEEEEECCceEEEehHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTG  141 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdA  141 (154)
                      +.++|+...|+.|.....++.++.  -.+.++++... ...+.++.+|+..  + =+++ +  +|+.+.|.+.
T Consensus         2 ~i~~y~~~~C~~C~~~~~~l~~~~--i~~~~~di~~~~~~~~~~~~~~~~~--v-P~l~-~--~g~~~~g~~~   66 (75)
T 1r7h_A            2 SITLYTKPACVQCTATKKALDRAG--LAYNTVDISLDDEARDYVMALGYVQ--A-PVVE-V--DGEHWSGFRP   66 (75)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTT--CCCEEEETTTCHHHHHHHHHTTCBC--C-CEEE-E--TTEEEESCCH
T ss_pred             eEEEEeCCCChHHHHHHHHHHHcC--CCcEEEECCCCHHHHHHHHHcCCCc--c-CEEE-E--CCeEEcCCCH
Confidence            467888899999999999998764  36778888652 2222334666531  2 1333 3  4666666553

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=84.91  E-value=4.4  Score=28.92  Aligned_cols=42  Identities=2%  Similarity=-0.148  Sum_probs=25.4

Q ss_pred             CCCCCCCCeE-EEE--cCCCcchHHHHHHHHHHcCC-CcEEEEEcC
Q 031708           63 MEPSLLQPGV-VIY--DGVCHLCHGGVKWVIRADKY-RKIKFCCLQ  104 (154)
Q Consensus        63 ~~p~~~~~~v-VfY--DG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQ  104 (154)
                      ++.....+.+ |+|  -..|+.|..++..+.+.-.+ ..+.++.+.
T Consensus        36 ~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is   81 (163)
T 1psq_A           36 SLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVS   81 (163)
T ss_dssp             EGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEE
T ss_pred             eHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEE
Confidence            4444444443 333  36899999999888775432 445555553

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=84.67  E-value=0.86  Score=33.09  Aligned_cols=34  Identities=6%  Similarity=0.067  Sum_probs=22.8

Q ss_pred             CeEEEEcCCCcchHHHHH----HHHHH--cCCCcEEEEEc
Q 031708           70 PGVVIYDGVCHLCHGGVK----WVIRA--DKYRKIKFCCL  103 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~----fl~r~--Dr~~r~~F~~i  103 (154)
                      ..++|+|=.|+.|..+..    ++.+.  +.+=+|.|.++
T Consensus        30 ~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~   69 (175)
T 1z6m_A           30 KMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   69 (175)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence            478899999999999885    44333  22224556555

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=84.47  E-value=1.4  Score=32.91  Aligned_cols=57  Identities=12%  Similarity=0.083  Sum_probs=42.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC------CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK------YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVE  130 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr------~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid  130 (154)
                      .+.||.-+|+.|......+.+...      .+++.|+.+......++.+.||+..  + =+++++.
T Consensus       138 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~  200 (226)
T 1a8l_A          138 ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA--V-PKIVIQV  200 (226)
T ss_dssp             EEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCS--S-CEEEEEE
T ss_pred             EEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcc--c-CeEEEEe
Confidence            567999999999999887766432      1479998887777777888999853  2 2666654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=84.41  E-value=4.2  Score=28.70  Aligned_cols=49  Identities=6%  Similarity=0.059  Sum_probs=27.8

Q ss_pred             eEEEEcCCCc-chHHHHHHHHHH----cCCC-cEEEEEcCCc-------ccHhHHHhcCCCh
Q 031708           71 GVVIYDGVCH-LCHGGVKWVIRA----DKYR-KIKFCCLQSQ-------AAEPYLRLCGLDR  119 (154)
Q Consensus        71 ~vVfYDG~C~-LC~~~V~fl~r~----Dr~~-r~~F~~iQS~-------~g~~lL~~~Gl~~  119 (154)
                      .+.||-..|+ .|......+.+.    ...+ ++.++.+...       ..++.++.+|++.
T Consensus        37 ll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~   98 (174)
T 1xzo_A           37 LADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSF   98 (174)
T ss_dssp             EEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCG
T ss_pred             EEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence            5568899999 997766655442    2222 4666655421       2234455666543

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=84.35  E-value=1.4  Score=33.09  Aligned_cols=54  Identities=9%  Similarity=0.087  Sum_probs=40.5

Q ss_pred             EEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEE
Q 031708           72 VVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLF  128 (154)
Q Consensus        72 vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivl  128 (154)
                      +.||.-+|+.|...+..+.+... .+++.|+.+......++.+.||+..  + =++++
T Consensus       141 v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~  195 (229)
T 2ywm_A          141 WVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVG--V-PKIVI  195 (229)
T ss_dssp             EEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTCCS--S-SEEEE
T ss_pred             EEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCCcc--c-CEEEE
Confidence            34999999999999988866432 2578888887766778889999853  2 25655

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=84.06  E-value=1.3  Score=32.77  Aligned_cols=35  Identities=11%  Similarity=0.059  Sum_probs=25.8

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCC--CcEEEE--Ec
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKY--RKIKFC--CL  103 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~--~r~~F~--~i  103 (154)
                      -..+.|||=.|+.|..+-..+.+.-.+  +++.|.  |+
T Consensus        27 ~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           27 IEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             CEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            358899999999999999988765432  355554  55

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=84.00  E-value=3.1  Score=29.73  Aligned_cols=71  Identities=11%  Similarity=0.089  Sum_probs=47.4

Q ss_pred             CeEEEEcCCCcchHHH-HHHHHHHcCC-CcEEEEEcCCcc-----cHhHHHhcCCChhhccceEEEEECCceEEEehHHH
Q 031708           70 PGVVIYDGVCHLCHGG-VKWVIRADKY-RKIKFCCLQSQA-----AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG  142 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~-V~fl~r~Dr~-~r~~F~~iQS~~-----g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAv  142 (154)
                      +.+||.=..|++|.+. ..++.++... -.+.++++....     .+++.+.+|...  + =. +++  +|....|.|-+
T Consensus        38 ~Vvvy~~~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~t--V-P~-vfi--~g~~igG~d~l  111 (129)
T 3ctg_A           38 EVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKT--V-PN-VYI--NGKHIGGNSDL  111 (129)
T ss_dssp             SEEEEECTTCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCS--S-CE-EEE--TTEEEESHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCCCC--C-CE-EEE--CCEEEcCHHHH
Confidence            4788888899999999 8888776521 368888886532     134455566532  2 12 355  47778899987


Q ss_pred             HHHH
Q 031708          143 GWGI  146 (154)
Q Consensus       143 l~il  146 (154)
                      ..+.
T Consensus       112 ~~l~  115 (129)
T 3ctg_A          112 ETLK  115 (129)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=83.98  E-value=7.6  Score=26.45  Aligned_cols=70  Identities=9%  Similarity=0.078  Sum_probs=46.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcc-----cHhHHHhcCCChhhccceEEEEECCceEEEehHHH
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQA-----AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG  142 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~-----g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAv  142 (154)
                      .+.++|+--.|+.|.....++.+..-. +++.++++....     -+++.+.+|...  + =++ ++  +|+...|.+-+
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~--v-P~v-~i--~g~~igg~~~~   92 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKT--V-PRI-FF--GKTSIGGYSDL   92 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCS--S-CEE-EE--TTEEEESHHHH
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCC--c-CEE-EE--CCEEEeCcHHH
Confidence            357889999999999999999775432 238889986532     134555677532  2 233 44  47777787755


Q ss_pred             HH
Q 031708          143 GW  144 (154)
Q Consensus       143 l~  144 (154)
                      ..
T Consensus        93 ~~   94 (114)
T 2hze_A           93 LE   94 (114)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=83.68  E-value=1.8  Score=31.97  Aligned_cols=33  Identities=9%  Similarity=0.092  Sum_probs=22.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCL  103 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~i  103 (154)
                      .+.|+-.+|+.|...+..+.+.-.   +..+.++.+
T Consensus        52 ll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~v   87 (190)
T 2vup_A           52 LIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAF   87 (190)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred             EEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            466789999999988887765321   123556555

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=83.47  E-value=4.7  Score=29.50  Aligned_cols=67  Identities=19%  Similarity=0.249  Sum_probs=45.7

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccH----hHHHhcCCChhhccceEEEEECCceEEEehHHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAE----PYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGW  144 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~----~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~  144 (154)
                      +.+||+--.|+.|.....++.++.-  .+.++++... .+.    ++.+.+|+..  + =++ ++  +|+...|.+.+..
T Consensus        50 ~Vvvf~~~~Cp~C~~~k~~L~~~~i--~~~~vdId~~~~~~~~~~~L~~~~g~~t--v-P~i-fi--~G~~igG~d~l~~  121 (146)
T 2ht9_A           50 CVVIFSKTSCSYCTMAKKLFHDMNV--NYKVVELDLLEYGNQFQDALYKMTGERT--V-PRI-FV--NGTFIGGATDTHR  121 (146)
T ss_dssp             SEEEEECTTCHHHHHHHHHHHHHTC--CCEEEEGGGCTTHHHHHHHHHHHHSCCC--S-CEE-EE--TTEEEESHHHHHH
T ss_pred             CEEEEECCCChhHHHHHHHHHHcCC--CeEEEECccCcCCHHHHHHHHHHhCCCC--c-CeE-EE--CCEEEeCchHHHH
Confidence            5788999999999999999988764  5778888643 112    2445667532  2 234 44  5777888776553

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=83.16  E-value=1.9  Score=31.15  Aligned_cols=62  Identities=5%  Similarity=-0.037  Sum_probs=41.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCC------CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKY------RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~------~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      ..+.||=-+|+.|..+-..+...-..      -.+..+++.......+...+++. . + =++++++ +|+-
T Consensus        21 ~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~-g-~-PT~i~f~-~G~e   88 (116)
T 3dml_A           21 RLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVT-F-T-PTFVLMA-GDVE   88 (116)
T ss_dssp             EEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCC-S-S-SEEEEEE-TTEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCC-C-C-CEEEEEE-CCEE
Confidence            37889999999999987766543221      46888899875433333455653 1 2 3888988 4554

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=82.81  E-value=3.1  Score=31.89  Aligned_cols=75  Identities=11%  Similarity=0.142  Sum_probs=42.0

Q ss_pred             CCCCCCCCe--EEEE-cCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcc----------------------------c
Q 031708           63 MEPSLLQPG--VVIY-DGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQA----------------------------A  108 (154)
Q Consensus        63 ~~p~~~~~~--vVfY-DG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~----------------------------g  108 (154)
                      .+.....+.  +.|| -..|+.|..++..+.+.-.   +..+.++.+....                            .
T Consensus        50 ~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~  129 (220)
T 1zye_A           50 SLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLT  129 (220)
T ss_dssp             EGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTT
T ss_pred             EHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCc
Confidence            444444443  3455 6789999998877755321   1345555553221                            1


Q ss_pred             HhHHHhcCCChhh---ccceEEEEECCceEEE
Q 031708          109 EPYLRLCGLDRED---VLRRFLFVEGPGLYHQ  137 (154)
Q Consensus       109 ~~lL~~~Gl~~e~---~~~Sivlid~~G~~y~  137 (154)
                      .++.+.||+..+.   ..-+++++|.+|++..
T Consensus       130 ~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~  161 (220)
T 1zye_A          130 KQISRDYGVLLEGPGLALRGLFIIDPNGVIKH  161 (220)
T ss_dssp             SHHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             HHHHHHhCCeecCCCcccceEEEECCCCEEEE
Confidence            2455666664110   1247888888887654

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=82.59  E-value=8.7  Score=27.45  Aligned_cols=42  Identities=10%  Similarity=-0.016  Sum_probs=25.8

Q ss_pred             CCCCCCCCe-EEEE--cCCCcchHHHHHHHHHHcCC-CcEEEEEcC
Q 031708           63 MEPSLLQPG-VVIY--DGVCHLCHGGVKWVIRADKY-RKIKFCCLQ  104 (154)
Q Consensus        63 ~~p~~~~~~-vVfY--DG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQ  104 (154)
                      ++.....+. +|+|  -..|+.|..++..+.+.-.+ ..+.++.+.
T Consensus        41 ~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~~~v~vv~Is   86 (171)
T 2yzh_A           41 IVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGMEGVDVTVVS   86 (171)
T ss_dssp             EESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEE
T ss_pred             eHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHcCCceEEEEe
Confidence            444444443 3333  46999999999888775432 455555553

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=82.55  E-value=8  Score=29.42  Aligned_cols=57  Identities=12%  Similarity=0.086  Sum_probs=41.1

Q ss_pred             EEcCCCcchHHHHHHHHHH--cCCCcEEEEEcCCc--ccHhHHHhcCCChhhccceEEEEEC
Q 031708           74 IYDGVCHLCHGGVKWVIRA--DKYRKIKFCCLQSQ--AAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        74 fYDG~C~LC~~~V~fl~r~--Dr~~r~~F~~iQS~--~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      |+|..|.=|..+...+++.  ..++++.|+-+...  .....++.+|++..+. =++.+++.
T Consensus       138 f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~-P~~~i~~~  198 (227)
T 4f9z_D          138 IMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQL-PALAIYQT  198 (227)
T ss_dssp             EECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGC-SEEEEEES
T ss_pred             EEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccC-CEEEEEEC
Confidence            4499999998887777553  34567888877763  4667889999987655 46777763

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=82.37  E-value=5.7  Score=27.10  Aligned_cols=74  Identities=9%  Similarity=-0.002  Sum_probs=44.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCC-cccHhHHHhc--CCChhhccceEEEEECCceEEEeh--HHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS-QAAEPYLRLC--GLDREDVLRRFLFVEGPGLYHQAS--TGGGW  144 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS-~~g~~lL~~~--Gl~~e~~~~Sivlid~~G~~y~gS--dAvl~  144 (154)
                      ..+||==-.|++|.+.-+++.++.-  .+...++.. +.+.+.+...  |..  .+  =.+++ +||.+..+.  +.+.+
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~gi--~y~~idi~~d~~~~~~~~~~~~G~~--tV--P~I~i-~Dg~~l~~~~~~el~~   77 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTANRI--AYDEVDIEHNRAAAEFVGSVNGGNR--TV--PTVKF-ADGSTLTNPSADEVKA   77 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHTTC--CCEEEETTTCHHHHHHHHHHSSSSS--CS--CEEEE-TTSCEEESCCHHHHHH
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhcCC--ceEEEEcCCCHHHHHHHHHHcCCCC--Ee--CEEEE-eCCEEEeCCCHHHHHH
Confidence            4566668899999999999988653  688888854 4444434332  321  12  13344 457767663  34444


Q ss_pred             HHHHcC
Q 031708          145 GITVNG  150 (154)
Q Consensus       145 ilr~lg  150 (154)
                      -+..++
T Consensus        78 ~L~el~   83 (92)
T 2lqo_A           78 KLVKIA   83 (92)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            444443

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=82.32  E-value=1.3  Score=29.91  Aligned_cols=61  Identities=13%  Similarity=0.219  Sum_probs=41.4

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCc-ccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~-~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||-.+|+-|......+.+... ...+.|+.+... ...++.+.+|+..  + =++++.. +|..
T Consensus        41 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~--~-Pt~~~~~-~G~~  103 (124)
T 1faa_A           41 VLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRV--V-PTFKILK-ENSV  103 (124)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSS--S-SEEEEEE-TTEE
T ss_pred             EEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCe--e-eEEEEEe-CCcE
Confidence            577999999999999888866432 234777777654 4567778888853  2 2655554 4654

>4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A*

Probab=82.32  E-value=10  Score=28.33  Aligned_cols=77  Identities=9%  Similarity=-0.108  Sum_probs=43.5

Q ss_pred             CeEEEEcC----------CCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhh------ccceE-EEEEC-
Q 031708           70 PGVVIYDG----------VCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDRED------VLRRF-LFVEG-  131 (154)
Q Consensus        70 ~~vVfYDG----------~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~------~~~Si-vlid~-  131 (154)
                      ++++|||-          .||+|.+..-.|.-+.-  .++.+.+.-..-...+...|.....      ....| +++++ 
T Consensus         3 ~pi~lYd~~~~~~~~~~~~SP~~~kvr~~L~~kgi--~y~~~~v~~~~~~~~~~~~g~~~~~~~~~~~P~~~VPvL~~~d   80 (253)
T 4f03_A            3 QPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGL--KYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPN   80 (253)
T ss_dssp             CCEEEEECCCCGGGTTCCCCHHHHHHHHHHHHHTC--CEEEEECCGGGHHHHHHHHTCCCSEECTTCCEECCSCEEEETT
T ss_pred             CCeEEeecCCCCCCCCCCcChhHHHHHHHHHHcCC--CCEEEEEccccchhhhhhcCCCCchhhHhhCCCCccCeEEeCC
Confidence            46899983          38999886555544432  4555555543333444454443211      11122 34443 


Q ss_pred             CceEEEehHHHHHHHHH
Q 031708          132 PGLYHQASTGGGWGITV  148 (154)
Q Consensus       132 ~G~~y~gSdAvl~ilr~  148 (154)
                      +|.+...|.||+.-+..
T Consensus        81 ~g~~l~ES~aI~~YL~~   97 (253)
T 4f03_A           81 TKKVVEDSAAIAKYLDE   97 (253)
T ss_dssp             TTEEEESHHHHHHHHHH
T ss_pred             CCEEEecHHHHHHHHHH
Confidence            57889999998885543

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=81.82  E-value=2.7  Score=30.55  Aligned_cols=34  Identities=6%  Similarity=-0.001  Sum_probs=23.2

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQ  104 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQ  104 (154)
                      .+.||-.+|+.|...+..+.+.-.   +..+.++.+.
T Consensus        51 ll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs   87 (183)
T 2obi_A           51 IVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFP   87 (183)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence            455788999999988887765331   2246776663

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=81.76  E-value=0.32  Score=33.02  Aligned_cols=61  Identities=13%  Similarity=0.093  Sum_probs=42.3

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      -.+.||..+|+.|......+.+.... ..+.|+.+.-....++.+.+|+..- .  +++++ .+|.
T Consensus        39 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~-P--t~~~~-~~g~  100 (130)
T 1wmj_A           39 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAM-P--TFLFI-KDGA  100 (130)
T ss_dssp             CBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTCCSS-C--CCCBC-TTTT
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCCCcc-c--eEEEE-eCCe
Confidence            36778899999999988877664432 3688888877667778888887532 2  45554 3444

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=81.30  E-value=1.3  Score=34.28  Aligned_cols=32  Identities=13%  Similarity=-0.169  Sum_probs=22.0

Q ss_pred             CeEEEEcCCCcchHHHHHHH----H-HHcCCCcEEEE
Q 031708           70 PGVVIYDGVCHLCHGGVKWV----I-RADKYRKIKFC  101 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl----~-r~Dr~~r~~F~  101 (154)
                      .+++|+|=.|++|.++..-+    + +.-..++++|+
T Consensus        18 tivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v   54 (205)
T 3gmf_A           18 RLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIE   54 (205)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence            47889999999999877433    3 22125666555

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=81.23  E-value=4  Score=29.24  Aligned_cols=33  Identities=12%  Similarity=-0.008  Sum_probs=22.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQ  104 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQ  104 (154)
                      .+.||-..|+.|. .+..+.+.-.   +..+.++.+.
T Consensus        36 ll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs   71 (171)
T 3cmi_A           36 LIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFP   71 (171)
T ss_dssp             EEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             EEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEE
Confidence            4668899999999 8877655321   2247776663

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=81.19  E-value=0.87  Score=34.95  Aligned_cols=32  Identities=16%  Similarity=0.233  Sum_probs=24.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCC-CcEEEE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKY-RKIKFC  101 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~  101 (154)
                      ..++|+|-+|+.|..+...+.+.... -++.+.
T Consensus        89 ~vv~F~d~~Cp~C~~~~~~l~~l~~~~v~v~~~  121 (216)
T 1eej_A           89 VITVFTDITCGYCHKLHEQMADYNALGITVRYL  121 (216)
T ss_dssp             EEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHhCCcEEEEE
Confidence            46889999999999999888776543 244444

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=81.19  E-value=1.9  Score=31.83  Aligned_cols=35  Identities=14%  Similarity=0.122  Sum_probs=25.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCC--CcE--EEEEcC
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKY--RKI--KFCCLQ  104 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~--~r~--~F~~iQ  104 (154)
                      ..++|||-.|+.|......+.+.-.+  +++  ...++.
T Consensus        28 ~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           28 EVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             EEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            47889999999999998888765432  244  455553

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=80.98  E-value=8.5  Score=26.39  Aligned_cols=71  Identities=8%  Similarity=-0.013  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccH---h-HHHhcCCChhhccceEEEEECCceEEEehHHHH
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAE---P-YLRLCGLDREDVLRRFLFVEGPGLYHQASTGGG  143 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~---~-lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl  143 (154)
                      .+.+||.=-.|++|.+..+++.++.-  .+....+... .+.   + +.+..|...  +  =.+++  +|+...|.|-+.
T Consensus        17 ~~v~vy~~~~Cp~C~~ak~~L~~~~i--~~~~~dvd~~~~~~~~~~~l~~~~g~~t--v--P~vfi--~g~~igG~d~l~   88 (114)
T 3h8q_A           17 SRVVIFSKSYCPHSTRVKELFSSLGV--ECNVLELDQVDDGARVQEVLSEITNQKT--V--PNIFV--NKVHVGGCDQTF   88 (114)
T ss_dssp             CSEEEEECTTCHHHHHHHHHHHHTTC--CCEEEETTTSTTHHHHHHHHHHHHSCCS--S--CEEEE--TTEEEESHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHcCC--CcEEEEecCCCChHHHHHHHHHHhCCCc--c--CEEEE--CCEEEeCHHHHH
Confidence            35777888899999999999988753  5777888641 221   2 224445321  1  13344  578889998777


Q ss_pred             HHHH
Q 031708          144 WGIT  147 (154)
Q Consensus       144 ~ilr  147 (154)
                      .+.+
T Consensus        89 ~l~~   92 (114)
T 3h8q_A           89 QAYQ   92 (114)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=80.72  E-value=1.2  Score=31.68  Aligned_cols=59  Identities=20%  Similarity=0.167  Sum_probs=38.5

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCC--CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKY--RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~--~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      ..++|+=-.|++|.....+|.+...+  =.+..+++..  ..++.++||+.   + =+++++. +|+.
T Consensus        31 ~vv~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~--d~~l~~~ygv~---V-P~l~~~~-dG~~   91 (107)
T 2fgx_A           31 KLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDG--NEHLTRLYNDR---V-PVLFAVN-EDKE   91 (107)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTT--CHHHHHHSTTS---C-SEEEETT-TTEE
T ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECCC--CHHHHHHhCCC---C-ceEEEEE-CCEE
Confidence            46777777999999999999874322  2455566654  44667889973   3 3555443 3543

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=80.65  E-value=4.7  Score=29.45  Aligned_cols=34  Identities=3%  Similarity=-0.133  Sum_probs=23.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQ  104 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQ  104 (154)
                      .+.|+-.+|+.|..++..+.+.-   ++..+.++.+.
T Consensus        53 lv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is   89 (185)
T 2gs3_A           53 IVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFP   89 (185)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             EEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence            45578899999999887776532   12247777764

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=80.56  E-value=5.2  Score=28.09  Aligned_cols=42  Identities=5%  Similarity=0.069  Sum_probs=25.3

Q ss_pred             CCCCCCCC--eEEEEcCCCcc-hHHHHHHHHHHcC-------CCcEEEEEcC
Q 031708           63 MEPSLLQP--GVVIYDGVCHL-CHGGVKWVIRADK-------YRKIKFCCLQ  104 (154)
Q Consensus        63 ~~p~~~~~--~vVfYDG~C~L-C~~~V~fl~r~Dr-------~~r~~F~~iQ  104 (154)
                      ++.....+  .+.|+-.+|+- |......+.+.-.       ...+.++.+.
T Consensus        20 ~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is   71 (171)
T 2rli_A           20 CKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFIT   71 (171)
T ss_dssp             ETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEE
T ss_pred             eHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEE
Confidence            33344444  44567899995 9998877655321       1356655553

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=80.55  E-value=2.4  Score=31.85  Aligned_cols=34  Identities=9%  Similarity=0.097  Sum_probs=25.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCC--CcEEE--EEc
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKY--RKIKF--CCL  103 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~--~r~~F--~~i  103 (154)
                      ..+.|||=.|+.|...-..+.+.-.+  +++.|  .|+
T Consensus        27 ~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~   64 (193)
T 3hz8_A           27 EVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHV   64 (193)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence            47889999999999999888775432  24555  454

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=80.49  E-value=8.9  Score=28.46  Aligned_cols=77  Identities=12%  Similarity=0.028  Sum_probs=47.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc-----CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEE-----ehH
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD-----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQ-----AST  140 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D-----r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~-----gSd  140 (154)
                      .+.||-.+|+-|......+.+..     +...+.|+.+......++.+++|+..  + =+++++.+ |....     ..+
T Consensus       151 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~-g~~~~~~g~~~~~  226 (241)
T 3idv_A          151 LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSG--Y-PTLKIFRK-GRPYDYNGPREKY  226 (241)
T ss_dssp             EEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCS--S-SEEEEEET-TEEEECCSCCSHH
T ss_pred             EEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcc--c-CEEEEEEC-CeEEEecCCCCHH
Confidence            46689999999987655444322     22347777776666678889999863  3 37777765 44322     244


Q ss_pred             HHHHHHHHcCC
Q 031708          141 GGGWGITVNGK  151 (154)
Q Consensus       141 Avl~ilr~lg~  151 (154)
                      .+...+...-+
T Consensus       227 ~l~~~l~~~~~  237 (241)
T 3idv_A          227 GIVDYMIEQSG  237 (241)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHhhhC
Confidence            55555444333

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=80.35  E-value=5.1  Score=24.41  Aligned_cols=56  Identities=18%  Similarity=0.130  Sum_probs=38.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      .+.||=..|+.|......+.+..  ..+++.+..+.   ..++.+++|+..  + =++++   +|+.
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~--~-Pt~~~---~G~~   60 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTA--L-PGLAV---DGEL   60 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSS--S-SCEEE---TTEE
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCc--C-CEEEE---CCEE
Confidence            46677789999999988876643  23578898887   345677888753  2 25555   4554

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=80.33  E-value=2  Score=31.37  Aligned_cols=34  Identities=15%  Similarity=0.140  Sum_probs=25.0

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcC--CCcEEE--EEc
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADK--YRKIKF--CCL  103 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F--~~i  103 (154)
                      ..++|||=.|+.|..+...+.+.-.  .+++.|  .++
T Consensus        28 ~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           28 EVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             EEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            5788999999999999888766432  235555  565

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=80.22  E-value=0.4  Score=32.81  Aligned_cols=62  Identities=13%  Similarity=0.233  Sum_probs=39.6

Q ss_pred             eEEEEcCCCcchHHHHHHH---HHHcC--CCcEEEEEcCC--cccHhHHHhcCCChhhccceEEEEEC-CceE
Q 031708           71 GVVIYDGVCHLCHGGVKWV---IRADK--YRKIKFCCLQS--QAAEPYLRLCGLDREDVLRRFLFVEG-PGLY  135 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl---~r~Dr--~~r~~F~~iQS--~~g~~lL~~~Gl~~e~~~~Sivlid~-~G~~  135 (154)
                      .+.||.-+|+.|......+   .+...  .+++.|+.+.-  ....++.+.+|+..  + =++++++. +|.+
T Consensus        23 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~--~-Pt~~~~d~~~G~~   92 (130)
T 2lst_A           23 MVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPG--T-PTFVFLVPKAGAW   92 (130)
Confidence            4668999999999988666   33221  23466666544  44556777888743  2 36777763 4664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1wjka_	100	Thioredoxin-like structure containing protein C330	95.88
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	92.83
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	92.76
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	92.63
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	92.41
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	91.35
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	91.04
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	90.6
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	89.86
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	88.73
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	88.59
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	88.49
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	88.03
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	87.11
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	86.73
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	86.48
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	86.41
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	84.32
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	83.84
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	83.75
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	82.86
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	81.3
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	80.07

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.88  E-value=0.02  Score=38.40  Aligned_cols=79  Identities=9%  Similarity=0.093  Sum_probs=58.2

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEE--ehHHHHHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQ--ASTGGGWGIT  147 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~--gSdAvl~ilr  147 (154)
                      ..++|+=-.|++|.....++.+...+-.++++.+.-....++.++||+.   +  =+++++++...+.  .-+.+...++
T Consensus        18 ~i~lft~~~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~~~---V--Pvl~idg~~~~~g~~d~~~L~~~L~   92 (100)
T d1wjka_          18 VLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFD---I--PVFHLNGQFLMMHRVNTSKLEKQLR   92 (100)
T ss_dssp             EEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSSSS---C--SEEEESSSEEEESSCCHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHhhhhcceEEEecccccCHHHHHHhccc---C--CceeecCceEEeCCCCHHHHHHHHH
Confidence            4666667899999999999999887778899999888888999999974   3  2556765433222  2345666777


Q ss_pred             HcCCCC
Q 031708          148 VNGKPG  153 (154)
Q Consensus       148 ~lg~p~  153 (154)
                      .+.+++
T Consensus        93 ~l~~~~   98 (100)
T d1wjka_          93 KLSGPS   98 (100)
T ss_dssp             SSSCSS
T ss_pred             HHhcCC
Confidence            776654

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.42  Score=29.91  Aligned_cols=73  Identities=14%  Similarity=0.064  Sum_probs=46.6

Q ss_pred             EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHHHcCC
Q 031708           72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITVNGK  151 (154)
Q Consensus        72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr~lg~  151 (154)
                      -|+.-..||+|.+...++..++-.-.+  ..+.....+..++..|.  ..+   =++++++|++..+|.+++.-+..+.|
T Consensus         2 kLY~~~~cP~~~rvr~~l~~kgi~~e~--~~~~~~~~~~~~~~~p~--~~V---P~L~~~dg~~i~eS~~I~~yLd~~~G   74 (75)
T d1g7oa2           2 KLYIYDHCPYCLKARMIFGLKNIPVEL--HVLLNDDAETPTRMVGQ--KQV---PILQKDDSRYMPESMDIVHYVDKLDG   74 (75)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHTCCCEE--EECCTTTTHHHHHHHSS--SCC---CEEEETTTEEEECHHHHHHHHHHHTT
T ss_pred             EEEccCCCCchHHHHHHHHHhCCCccc--ccccccchHHHHHhCCC--Cce---EEEEEcCCCEEecHHHHHHHHHHhhC
Confidence            367778899999988888877764344  44433333444444332  112   13456789989999999986665543

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=92.76  E-value=0.29  Score=31.77  Aligned_cols=60  Identities=15%  Similarity=0.181  Sum_probs=46.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHH--cCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRA--DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~--Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      .+.||-.+|+-|......+.+.  ...+++.|+-+.-.....+.++||+..  + =+++++.+ |.
T Consensus        24 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~--~-Pt~~~~~~-g~   85 (108)
T d1thxa_          24 LVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEG--V-PALRLVKG-EQ   85 (108)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCS--S-SEEEEEET-TE
T ss_pred             EEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccC--C-CEEEEEEC-CE
Confidence            4558999999999999888654  345678888888777888889999853  3 37888875 44

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.045  Score=39.31  Aligned_cols=34  Identities=15%  Similarity=0.045  Sum_probs=26.1

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcE--EEEEc
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKI--KFCCL  103 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~--~F~~i  103 (154)
                      ..++|+|=.||+|.++-.-+.+.-..+++  .|.++
T Consensus        39 tv~vF~D~~CP~C~~~~~~l~~l~~~~~v~v~~~~~   74 (169)
T d1v58a1          39 IVYVFADPFCPYCKQFWQQARPWVDSGKVQLRTLLV   74 (169)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHhccceeEEEEec
Confidence            46789999999999999888776555554  55555

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.41  E-value=0.32  Score=31.56  Aligned_cols=75  Identities=15%  Similarity=0.074  Sum_probs=52.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc-CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHHHc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD-KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITVN  149 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D-r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr~l  149 (154)
                      .++||=-+|+.|...+..+.+.. ...++.|.-+......++.+.||+..  + =+++ +++ ..++.|.-..-.+...+
T Consensus        19 i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I~~--v-Pt~~-~ng-~~~~~G~~~~~~l~~~l   93 (96)
T d1hyua4          19 FETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMG--V-PAVF-VNG-KEFGQGRMTLTEIVAKV   93 (96)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCS--S-SEEE-ETT-EEEEESCCCHHHHHHHH
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhccccc--c-cEEE-ECC-EEEEecCCCHHHHHHHH
Confidence            56788999999999999887764 34679998888888889999999864  3 2654 433 33566654444454444


Q ss_pred             C
Q 031708          150 G  150 (154)
Q Consensus       150 g  150 (154)
                      .
T Consensus        94 e   94 (96)
T d1hyua4          94 D   94 (96)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.98  Score=29.57  Aligned_cols=77  Identities=6%  Similarity=-0.117  Sum_probs=46.2

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceE-EEEECCceEEEehHHHHHH-H
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGWG-I  146 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~i-l  146 (154)
                      ..+.|+-...|++|.+..-.+..+.-.-.+..++++.. .+.++ .  +.+.   ..+ ++++++|.+..+|.|++.- -
T Consensus        18 ~~~~Ly~~~~sP~~~rv~~~l~~kgi~~e~~~v~~~~~-~~~~~-~--~nP~---g~VPvL~~~dg~~i~eS~aI~~YL~   90 (98)
T d1eema2          18 GSIRIYSMRFCPFAERTRLVLKAKGIRHEVININLKNK-PEWFF-K--KNPF---GLVPVLENSQGQLIYESAITCEYLD   90 (98)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHHHTTCCEEEEEBCTTSC-CGGGG-G--TCTT---CCSCEEEETTCCEEESHHHHHHHHH
T ss_pred             CcEEEEcCCCChHHHHHHHHHHHhCCCCEEEEecccCC-cHHHH-h--hhcc---ccceeEEeCCCCEEcCHHHHHHHHH
Confidence            46788888999999987766666554334444555442 12222 2  2222   122 4556778888899998764 4


Q ss_pred             HHcCCC
Q 031708          147 TVNGKP  152 (154)
Q Consensus       147 r~lg~p  152 (154)
                      ...++|
T Consensus        91 e~~p~~   96 (98)
T d1eema2          91 EAYPGK   96 (98)
T ss_dssp             HHSCSS
T ss_pred             HHCCCC
Confidence            444444

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.6  Score=30.10  Aligned_cols=69  Identities=7%  Similarity=-0.053  Sum_probs=42.5

Q ss_pred             CCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHH-HcCCC
Q 031708           77 GVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT-VNGKP  152 (154)
Q Consensus        77 G~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr-~lg~p  152 (154)
                      |.|++|++..-.+..+.-.-.+..++.....  +.+...+- ...+   =++++ +|.+...|.+++.-+. .++.|
T Consensus        17 ~~cPf~~rv~~~L~~kgi~~~~~~v~~~~~~--~~~~~~nP-~~~v---PvL~~-~~~~i~eS~~I~~YLee~~~~P   86 (86)
T d1k0ma2          17 GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRT--ETVQKLCP-GGEL---PFLLY-GTEVHTDTNKIEEFLEAVLCPP   86 (86)
T ss_dssp             CSCHHHHHHHHHHHHHTCCCEEEEECTTSCC--HHHHHHCT-TCCS---SEEEE-TTEEEECHHHHHHHHHHHSCTT
T ss_pred             CCCHhHHHHHHHHHHHCCCcEEEEeeccccc--HHHHHHhc-cCce---eEEEE-cccccccHHHHHHHHHHHcCCC
Confidence            7899999988888777665566667665432  22333331 1222   12334 5888999999887553 35443

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=90.60  E-value=0.43  Score=30.86  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=42.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHH--cCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRA--DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~--Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      .+.||--+|+-|......+.+.  ...+++.|+-+.-.....+.+++++..  + =+++++.+
T Consensus        23 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~--~-Pt~~~~~~   82 (107)
T d1dbya_          23 LVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRS--I-PTIMVFKG   82 (107)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCS--S-CEEEEESS
T ss_pred             EEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccc--e-EEEEEEEC
Confidence            3448999999999998877664  234667777776666778889999853  2 37878764

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.86  E-value=0.97  Score=29.35  Aligned_cols=59  Identities=12%  Similarity=0.170  Sum_probs=45.9

Q ss_pred             CeEE--EEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708           70 PGVV--IYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG  131 (154)
Q Consensus        70 ~~vV--fYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~  131 (154)
                      +++|  ||=-+|+-|......+.+.-  ..+++.|+.+.......+.+++|+..  + =+++++.+
T Consensus        26 k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~--~-Pt~~~~~~   88 (111)
T d1xwaa_          26 KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISS--M-PTFVFLKN   88 (111)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCS--S-SEEEEEET
T ss_pred             CEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCcc--c-cEEEEEEC
Confidence            4444  99999999999999887753  34678999888888888899999864  2 37777764

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.73  E-value=0.13  Score=36.25  Aligned_cols=34  Identities=15%  Similarity=0.257  Sum_probs=24.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCC-cEEEEEc
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYR-KIKFCCL  103 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~-r~~F~~i  103 (154)
                      .+++|+|=.||+|.+....+......+ ++.|..+
T Consensus        29 tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~   63 (156)
T d1eeja1          29 VITVFTDITCGYCHKLHEQMADYNALGITVRYLAF   63 (156)
T ss_dssp             EEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEEC
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEec
Confidence            367899999999999988777665333 4555543

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=88.59  E-value=0.96  Score=28.81  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=44.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      .+.||--+|+-|.....-+.+..  ..+++.++.+.......+.+++|+..  . =+++++.+ |+
T Consensus        21 lv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~--~-Pt~~~~~~-G~   82 (104)
T d1fb6a_          21 MVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRS--I-PTVLFFKN-GE   82 (104)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--S-SEEEEEET-TE
T ss_pred             EEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceee--e-eEEEEEEc-Ce
Confidence            35589999999999888776543  34677888887777888999999853  2 37777764 54

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.49  E-value=0.65  Score=29.77  Aligned_cols=55  Identities=13%  Similarity=0.108  Sum_probs=41.8

Q ss_pred             EEEcCCCcchHHHHHHHHHH------cCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEE
Q 031708           73 VIYDGVCHLCHGGVKWVIRA------DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVE  130 (154)
Q Consensus        73 VfYDG~C~LC~~~V~fl~r~------Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid  130 (154)
                      +||--+|+-|...+..+.+.      ...+.+.+..+......++.++||+.-  + =++++..
T Consensus        21 ~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~--v-PTi~i~~   81 (107)
T d1a8la2          21 VFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA--V-PKIVIQV   81 (107)
T ss_dssp             EEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCS--S-CEEEEEE
T ss_pred             EEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccccccccccccccc--c-eEEEEEe
Confidence            47899999999998877654      245679999998888888999999853  2 2665543

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.03  E-value=0.15  Score=35.76  Aligned_cols=33  Identities=18%  Similarity=0.307  Sum_probs=24.7

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEc
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCL  103 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~i  103 (154)
                      .++|+|=.||+|.+.-.-+.++.. +.++++...
T Consensus        30 I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~   63 (150)
T d1t3ba1          30 VTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAF   63 (150)
T ss_dssp             EEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEEC
T ss_pred             EEEEECCCCHHHHHHhHHHHHHhccCceEEEEEe
Confidence            788999999999998887766543 345666654

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.11  E-value=0.17  Score=31.92  Aligned_cols=64  Identities=17%  Similarity=0.082  Sum_probs=47.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEeh
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQAS  139 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gS  139 (154)
                      ..+||=-+|+.|......+.+.-  -.+++.|+.+.....+++..+||+.-  + =+++ +++.++ +.|.
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~--~-Pt~~-~~~~~~-~~G~   70 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMA--V-PAIA-INGVVR-FVGA   70 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSC--S-SEEE-ETTTEE-EECS
T ss_pred             EEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceE--e-CEEE-ECCcEE-EEcC
Confidence            45688999999999998886643  34679999998888889999999853  2 2554 466665 5554

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.73  E-value=1.9  Score=28.31  Aligned_cols=79  Identities=6%  Similarity=0.064  Sum_probs=53.6

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECC----ceEEEeh---H
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGP----GLYHQAS---T  140 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~----G~~y~gS---d  140 (154)
                      .+.||--+|+.|.....-+.+..   +.+.+.|+-+.......+..++++..  + =+++++..+    +..|.|.   +
T Consensus        31 lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pti~~f~~g~~~~~~~y~g~~~~~  107 (119)
T d2b5ea4          31 LAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPG--F-PSLKIFKNSDVNNSIDYEGPRTAE  107 (119)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCS--S-SEEEEEETTCTTCEEECCSCCSHH
T ss_pred             EEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhcccc--C-CeEEEEECCEEeeeEEecCCCCHH
Confidence            67799999999999888665533   34578998887777888889998843  3 377777431    1123333   6


Q ss_pred             HHHHHHHHcCCC
Q 031708          141 GGGWGITVNGKP  152 (154)
Q Consensus       141 Avl~ilr~lg~p  152 (154)
                      .+...+....+|
T Consensus       108 ~l~~fi~k~~~P  119 (119)
T d2b5ea4         108 AIVQFMIKQSQP  119 (119)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHHhhCC
Confidence            676666655554

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=86.48  E-value=1.4  Score=27.62  Aligned_cols=71  Identities=11%  Similarity=0.054  Sum_probs=42.8

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceE-EEEECCceEEEehHHHHHHHH
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGWGIT  147 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~ilr  147 (154)
                      +.++++-.|++|.+..-++..++-.-.+..+++......+-+.+  +.+.   ..+ ++++ +|.....|.|++.-+.
T Consensus         1 m~LY~~~~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~--~nP~---g~VP~L~~-~g~~l~eS~aI~~YL~   72 (83)
T d1v2aa2           1 MDYYYSLISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTK--LNPQ---HTIPTLVD-NGHVVWESYAIVLYLV   72 (83)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHH--HCTT---CCSCEEEE-TTEEEESHHHHHHHHH
T ss_pred             CEEECCCCChHHHHHHHHHHHhCCCceEEEEeCCCCcchHHHHH--Hhhc---cCCCEEEE-ccceeEcHHHHHHHHH
Confidence            35788999999999666666666544555555544322222222  2222   122 3345 4788899999988653

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=86.41  E-value=1.6  Score=27.82  Aligned_cols=60  Identities=13%  Similarity=0.180  Sum_probs=47.1

Q ss_pred             eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      .+.||=.+|+-|......+.+..  -.+++.|+-+.-.....+.++|++.-  + =++++..+ |.
T Consensus        21 vv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~--~-Pt~~~~~~-G~   82 (105)
T d1nw2a_          21 LVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMS--I-PTLILFKG-GE   82 (105)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCB--S-SEEEEEET-TE
T ss_pred             EEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcce--e-eEEEEEEC-CE
Confidence            56699999999999988887654  35689999888888888889999864  2 47888765 54

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.32  E-value=2.8  Score=27.22  Aligned_cols=64  Identities=14%  Similarity=0.220  Sum_probs=45.3

Q ss_pred             eEEEEcCCCcchHHHHHHHHHH--cCCCcEEEEEcCCcc----cHhHHHhcCCChhhccceEEEEECCceEEEe
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRA--DKYRKIKFCCLQSQA----AEPYLRLCGLDREDVLRRFLFVEGPGLYHQA  138 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~--Dr~~r~~F~~iQS~~----g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~g  138 (154)
                      .+.||--+|+-|.+....+.+.  +...++.|+.+....    .+.+.+++|+..  + =+++++++ |....+
T Consensus        30 ~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~--~-PTli~~~~-gk~~~~   99 (115)
T d1zmaa1          30 TFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPT--V-PGFVHITD-GQINVR   99 (115)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCS--S-CEEEEEET-TEEEEE
T ss_pred             EEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeeccccccccccccccccccc--c-cEEEEEEC-CEEEEE
Confidence            6778889999999999888664  445678898886432    245677888853  2 37888874 655543

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.84  E-value=2  Score=28.68  Aligned_cols=62  Identities=6%  Similarity=-0.075  Sum_probs=37.9

Q ss_pred             CCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccH-hHHHhcCCChhhccceEEEEECCceEEEehHHHHHHH
Q 031708           77 GVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAE-PYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGI  146 (154)
Q Consensus        77 G~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~-~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~il  146 (154)
                      -.|++|++..+++..+.  -.+....+... ..+ .+.+..|..  .+  =.+||  +|....|.|-+..+.
T Consensus        28 p~Cp~c~~ak~lL~~~~--i~~~~~~v~~~~~~~~~l~~~t~~~--Tv--PqIFi--~g~~IGG~ddl~~l~   91 (109)
T d1wika_          28 AKCGFSKQILEILNSTG--VEYETFDILEDEEVRQGLKTFSNWP--TY--PQLYV--RGDLVGGLDIVKELK   91 (109)
T ss_dssp             CCSSTHHHHHHHHHHTC--SCEEEEESSSCHHHHHHHHHHHSCC--SS--CEEEC--SSSEEECHHHHHHHH
T ss_pred             CCChHHHHHHHHHHhcC--CCceEEEecccHHHHHHHHHhcCCC--CC--CeEEE--CCEEEcCHHHHHHHH
Confidence            34999999999997664  36777777542 222 222333332  12  23455  477788998877643

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.75  E-value=2.5  Score=27.58  Aligned_cols=58  Identities=12%  Similarity=0.226  Sum_probs=44.6

Q ss_pred             EEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708           74 IYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY  135 (154)
Q Consensus        74 fYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~  135 (154)
                      ||=.+|+-|......+.+... .+.+.|+-+.......+.++||+..  + =+++++.+ |+.
T Consensus        35 F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~V~~--~-Pt~~~~~~-G~~   93 (114)
T d1xfla_          35 FTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQA--M-PTFMFLKE-GKI   93 (114)
T ss_dssp             EECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCS--S-SEEEEEET-TEE
T ss_pred             EEcCCCCCccccccchhhhcccccccceeEEEeeeceeeccccceee--e-EEEEEEEC-CEE
Confidence            888999999999888876432 3568898888888889999999853  2 37777764 544

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=82.86  E-value=3.5  Score=25.18  Aligned_cols=72  Identities=7%  Similarity=-0.232  Sum_probs=43.0

Q ss_pred             CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708           69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT  147 (154)
Q Consensus        69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr  147 (154)
                      +++.|+--..|++|.+..-.+..++-.  +.++.+.-. .....++..+.  .   ..+.++..+|.....|.|++.-+.
T Consensus         2 ~~mkLy~~~~sp~~~rvr~~l~~kgi~--~e~~~v~~~~~~~~~~~~~~~--~---~~~p~l~~dg~~i~eS~~I~~YL~   74 (83)
T d1gwca2           2 DDLKLLGAWPSPFVTRVKLALALKGLS--YEDVEEDLYKKSELLLKSNPV--H---KKIPVLIHNGAPVCESMIILQYID   74 (83)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHHTCC--CEEEECCTTSCCHHHHHHSTT--T---CCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CeEEEEecCCChHHHHHHHHHHHCCCC--eEEEEEeccchhHHHHHHHhc--c---CCCceeecCCceEcCHHHHHHHHH
Confidence            346677778899999976666666543  555554321 12334444321  1   123344456888999999887544

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=81.30  E-value=4.3  Score=25.63  Aligned_cols=60  Identities=13%  Similarity=0.139  Sum_probs=43.5

Q ss_pred             eEEEEcCCCcchHHHHHHHHHH--cCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708           71 GVVIYDGVCHLCHGGVKWVIRA--DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL  134 (154)
Q Consensus        71 ~vVfYDG~C~LC~~~V~fl~r~--Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~  134 (154)
                      .+-||=.+|+-|......+.+.  ...+++.|.-+.......+.++||+.-  + =++++..+ |+
T Consensus        24 ~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~--~-PT~~~~~~-G~   85 (108)
T d2trxa_          24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG--I-PTLLLFKN-GE   85 (108)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCS--S-SEEEEEET-TE
T ss_pred             EEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCc--E-EEEEEEEC-CE
Confidence            3448999999999887777553  345678887777666778889999854  2 37777764 54

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.07  E-value=4.7  Score=24.80  Aligned_cols=74  Identities=5%  Similarity=-0.129  Sum_probs=41.6

Q ss_pred             CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCccc----HhHHHhcCCChhhccceE-EEEECCceEEEehHHHHH
Q 031708           70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA----EPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGW  144 (154)
Q Consensus        70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g----~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~  144 (154)
                      ++.|+..-.|++|.+..-.+....-  .+.++.+.-..+    .+.++.   .+.   ..+ ++++ +|.+..+|.|++.
T Consensus         1 ~m~Ly~~~~sp~~~kv~~~L~~~gi--~~~~~~i~~~~~~~~~~~~~~~---~p~---~~vPvL~~-~~~~l~eS~aI~~   71 (80)
T d1e6ba2           1 KLKLYSYWRSSCAHRVRIALALKGL--DYEYIPVNLLKGDQFDSDFKKI---NPM---GTVPALVD-GDVVINDSFAIIM   71 (80)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHTTC--CCEEEECCTTTTGGGCHHHHHH---CTT---CCSSEEEE-TTEEEESHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEEeccccccccHHHhhc---Ccc---ccCCEEEE-CCEEEECHHHHHH
Confidence            4568888999999986555555554  455555532111    222222   221   122 3445 4778889999877


Q ss_pred             -HHHHcCCC
Q 031708          145 -GITVNGKP  152 (154)
Q Consensus       145 -ilr~lg~p  152 (154)
                       +-+..+.|
T Consensus        72 yL~~~~p~P   80 (80)
T d1e6ba2          72 YLDEKYPEP   80 (80)
T ss_dssp             HHHHHSCSS
T ss_pred             HHHHhCCCC
Confidence             44444443