Citrus Sinensis ID: 031719
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 154 | ||||||
| 224075186 | 154 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.889 | 1e-76 | |
| 225426208 | 157 | PREDICTED: uncharacterized protein C119. | 1.0 | 0.980 | 0.883 | 1e-75 | |
| 224053743 | 154 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.870 | 9e-75 | |
| 225470956 | 157 | PREDICTED: uncharacterized protein C119. | 1.0 | 0.980 | 0.863 | 5e-74 | |
| 388502058 | 157 | unknown [Lotus japonicus] | 0.993 | 0.974 | 0.856 | 3e-73 | |
| 449432032 | 157 | PREDICTED: uncharacterized protein C119. | 0.993 | 0.974 | 0.862 | 3e-73 | |
| 388498352 | 157 | unknown [Medicago truncatula] | 0.993 | 0.974 | 0.843 | 3e-73 | |
| 388520763 | 157 | unknown [Lotus japonicus] | 0.993 | 0.974 | 0.849 | 5e-73 | |
| 255564625 | 157 | ormdl, putative [Ricinus communis] gi|22 | 0.993 | 0.974 | 0.849 | 6e-73 | |
| 359474131 | 171 | PREDICTED: uncharacterized protein C119. | 1.0 | 0.900 | 0.809 | 9e-73 |
| >gi|224075186|ref|XP_002304572.1| predicted protein [Populus trichocarpa] gi|222842004|gb|EEE79551.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/154 (88%), Positives = 145/154 (94%)
Query: 1 MYVRTVPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFV 60
MYV+ P TD+NRNTEWFTYPGVWTTY+ I+F+SWLLVLS+F CS GMAWT+VH HF V
Sbjct: 1 MYVKAEPTTDVNRNTEWFTYPGVWTTYMLIVFMSWLLVLSIFGCSPGMAWTIVHFCHFAV 60
Query: 61 TYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQ 120
TYHFFHWKKGTPFADDQGIYNGLTWWEQI+NGKQLTRNRKFLTVVPVVLYLIASHTTDYQ
Sbjct: 61 TYHFFHWKKGTPFADDQGIYNGLTWWEQIENGKQLTRNRKFLTVVPVVLYLIASHTTDYQ 120
Query: 121 NPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH 154
NPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH
Sbjct: 121 NPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH 154
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426208|ref|XP_002262624.1| PREDICTED: uncharacterized protein C119.09c isoform 1 [Vitis vinifera] gi|147807640|emb|CAN68846.1| hypothetical protein VITISV_024149 [Vitis vinifera] gi|297742409|emb|CBI34558.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224053743|ref|XP_002297957.1| predicted protein [Populus trichocarpa] gi|222845215|gb|EEE82762.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225470956|ref|XP_002266406.1| PREDICTED: uncharacterized protein C119.09c isoform 1 [Vitis vinifera] gi|147833320|emb|CAN64101.1| hypothetical protein VITISV_008727 [Vitis vinifera] gi|297745501|emb|CBI40581.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|388502058|gb|AFK39095.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|449432032|ref|XP_004133804.1| PREDICTED: uncharacterized protein C119.09c-like [Cucumis sativus] gi|449477951|ref|XP_004155172.1| PREDICTED: uncharacterized protein C119.09c-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|388498352|gb|AFK37242.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|388520763|gb|AFK48443.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|255564625|ref|XP_002523307.1| ormdl, putative [Ricinus communis] gi|223537395|gb|EEF39023.1| ormdl, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359474131|ref|XP_003631406.1| PREDICTED: uncharacterized protein C119.09c isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 154 | ||||||
| TAIR|locus:2165690 | 154 | AT5G42000 "AT5G42000" [Arabido | 0.993 | 0.993 | 0.849 | 4.6e-73 | |
| TAIR|locus:2035352 | 157 | AT1G01230 "AT1G01230" [Arabido | 0.993 | 0.974 | 0.803 | 3.8e-69 | |
| POMBASE|SPBC119.09c | 186 | SPBC119.09c "ORMDL family prot | 0.902 | 0.747 | 0.381 | 9.4e-27 | |
| MGI|MGI:2181669 | 153 | Ormdl1 "ORM1-like 1 (S. cerevi | 0.948 | 0.954 | 0.408 | 1.4e-25 | |
| UNIPROTKB|Q53FV1 | 153 | ORMDL2 "ORM1-like protein 2" [ | 0.948 | 0.954 | 0.401 | 1.8e-25 | |
| MGI|MGI:1913862 | 153 | Ormdl3 "ORM1-like 3 (S. cerevi | 0.928 | 0.934 | 0.402 | 2.2e-25 | |
| UNIPROTKB|Q5XH57 | 153 | ormdl1 "ORM1-like protein 1" [ | 0.948 | 0.954 | 0.414 | 2.9e-25 | |
| UNIPROTKB|F1NZ87 | 154 | ORMDL1 "Uncharacterized protei | 0.948 | 0.948 | 0.408 | 3.6e-25 | |
| RGD|1560577 | 153 | Ormdl3 "ORM1-like 3 (S. cerevi | 0.928 | 0.934 | 0.402 | 3.6e-25 | |
| UNIPROTKB|Q0VD15 | 153 | ORMDL3 "ORM1-like protein 3" [ | 0.928 | 0.934 | 0.402 | 4.6e-25 |
| TAIR|locus:2165690 AT5G42000 "AT5G42000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 130/153 (84%), Positives = 142/153 (92%)
Query: 1 MYVRTVPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFV 60
MYVR +P TD+NRNTEWFTYPGVWTTY+ ILF SWLLVLS+F+CS G+AWT+VHL+HF V
Sbjct: 1 MYVRALPTTDVNRNTEWFTYPGVWTTYILILFFSWLLVLSVFHCSPGIAWTIVHLAHFTV 60
Query: 61 TYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQ 120
TYH FHWKKGTPF DDQG+YN LTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQ
Sbjct: 61 TYHSFHWKKGTPFGDDQGVYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQ 120
Query: 121 NPMLFFNTLAVFVLVVAKFPNMHKVRIFGINAD 153
+PMLF NTLAVFV+VVAKFP+MHKVRIFGIN D
Sbjct: 121 HPMLFLNTLAVFVMVVAKFPHMHKVRIFGINGD 153
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| TAIR|locus:2035352 AT1G01230 "AT1G01230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| POMBASE|SPBC119.09c SPBC119.09c "ORMDL family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| MGI|MGI:2181669 Ormdl1 "ORM1-like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q53FV1 ORMDL2 "ORM1-like protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:1913862 Ormdl3 "ORM1-like 3 (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5XH57 ormdl1 "ORM1-like protein 1" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NZ87 ORMDL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| RGD|1560577 Ormdl3 "ORM1-like 3 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q0VD15 ORMDL3 "ORM1-like protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 154 | |||
| pfam04061 | 135 | pfam04061, ORMDL, ORMDL family | 4e-63 | |
| COG5081 | 180 | COG5081, COG5081, Predicted membrane protein [Func | 4e-31 |
| >gnl|CDD|190849 pfam04061, ORMDL, ORMDL family | Back alignment and domain information |
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Score = 189 bits (483), Expect = 4e-63
Identities = 64/135 (47%), Positives = 85/135 (62%)
Query: 12 NRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGT 71
N N W G W Y+ ++ + L +LS+ S+ AWTL +L H +Y FFHW KGT
Sbjct: 1 NPNANWVNQRGAWLIYVVLILLLKLFLLSIPGFSTEWAWTLTNLIHNIGSYIFFHWVKGT 60
Query: 72 PFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAV 131
PF DQG Y+ LT WEQID G Q T RKFLTVVP+VL+L+++H T Y + N +A+
Sbjct: 61 PFEFDQGAYDNLTMWEQIDEGAQYTPARKFLTVVPIVLFLLSTHYTHYDLTLFIINLIAL 120
Query: 132 FVLVVAKFPNMHKVR 146
V+V+ K P MH+VR
Sbjct: 121 LVVVIPKLPFMHRVR 135
|
Evidence form suggests that ORMDLs are involved in protein folding in the ER. Orm proteins have been identified as negative regulators of sphingolipid synthesis that form a conserved complex with serine palmitoyltransferase, the first and rate-limiting enzyme in sphingolipid production. This novel and conserved protein complex, has been termed the SPOTS complex (serine palmitoyltransferase, Orm1/2, Tsc3, and Sac1). Length = 135 |
| >gnl|CDD|227413 COG5081, COG5081, Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 154 | |||
| KOG3319 | 153 | consensus Predicted membrane protein [Function unk | 100.0 | |
| PF04061 | 136 | ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 b | 100.0 | |
| COG5081 | 180 | Predicted membrane protein [Function unknown] | 100.0 |
| >KOG3319 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Probab=100.00 E-value=2.4e-82 Score=499.00 Aligned_cols=153 Identities=52% Similarity=0.905 Sum_probs=151.1
Q ss_pred CccccCCCCCCCCCcceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhhhHHHHHhhhheeeeeecCcCCCCCCccc
Q 031719 1 MYVRTVPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPFADDQGIY 80 (154)
Q Consensus 1 ~~~~~~~~~~~N~N~~W~~~~G~W~~yiv~i~l~~l~~l~ip~~s~~~~WTltn~~h~~~ty~~fHwvKGtPf~~~qG~y 80 (154)
++.++.+++|+|+|++|++|||+|++|+++|+++|++++++||+|.+++|||||++|+++||+||||+|||||++|||+|
T Consensus 1 m~~~~~~~~~~N~Nt~w~~~rG~Wl~yil~i~ll~l~~ls~p~~s~~~aWTltnl~h~~~tyi~fH~vkGtPF~~d~g~y 80 (153)
T KOG3319|consen 1 MMDVADQHSDVNPNTRWVNQRGAWLIYILIILLLHLVLLSIPFVSPPWAWTLTNLIHNIGTYIFFHWVKGTPFEDDQGAY 80 (153)
T ss_pred CCccccCcCcCCCCceeeecCchHHHHHHHHHHHHHHHHhCccCCcchhHHHHHHHHHHhHheeEEEecCCCCcCCCcHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecCCCCCCccceeeehhhHHHHHHhhcccCCCCCchhhhHHhhhhhhhcCCCccceeeEeccccC
Q 031719 81 NGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINAD 153 (154)
Q Consensus 81 ~~LT~WEQID~g~q~T~trKFL~~vPIvLFllashyt~yd~~~f~iN~~~l~~vviPKLP~~HrvRifGiN~~ 153 (154)
|+||||||||+|.||||+||||+++||+||++||||||||..+|++|++|+++|++||||+||||||||||||
T Consensus 81 ~~lT~WEQid~g~q~T~~RKFLtivPIvLfl~~s~yt~y~~~~F~~N~~sl~~v~iPKlp~~H~vRIfgIn~~ 153 (153)
T KOG3319|consen 81 RLLTHWEQIDDGVQYTPSRKFLTIVPIVLFLLASHYTKYDHPLFLLNTLSLFVVVIPKLPQMHGVRIFGINKY 153 (153)
T ss_pred hhccHHHHhccccccccchhhhhHHHHHHHHHHHHhhccCcchhHHHHHHHHhhhhccccccceEEEecccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997
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| >PF04061 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 belongs to a novel gene family comprising three genes in humans (ORMDL1, ORMDL2 and ORMDL3), and homologs in yeast, microsporidia, plants, Drosophila, urochordates and vertebrates | Back alignment and domain information |
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| >COG5081 Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00