Citrus Sinensis ID: 031805

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHcccccHHHHcc
Coil and Loop (DISEMBL)
mgwqgkdpstdfrgggfiSLENLLYLARNFPKSFQDLLRkqegdrsvweypfavagVNITFMLIQMLdleavkprtMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVtrledlpsysllsr
Flexible Loop (DISEMBL)
mgwqgkdpstdfrggGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLEREllledvtrledlpsysllsr
Low Complexity Region (SEG)
MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTrrqlerellleDVTRLEDLPSYSLLSR
Disordered region (IsUnstruct)
***********FRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDV**************
Disordered Region (DISOPRED)
MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Disordered Region (DISEMBL)
MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Disordered Region (DISPRO)
****GKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
Q54YW1	977	ELMO domain-containing pr	yes	no	0.901	0.140	0.310	2e-15
Q54RS7	618	ELMO domain-containing pr	no	no	0.802	0.197	0.357	3e-15
Q96BJ8	720	Engulfment and cell motil	yes	no	0.901	0.190	0.269	2e-13
Q499U2	720	Engulfment and cell motil	yes	no	0.901	0.190	0.262	4e-13
Q54UP9	1267	Ankyrin repeat and ELMO d	no	no	0.756	0.090	0.323	4e-13
Q8BYZ7	720	Engulfment and cell motil	yes	no	0.901	0.190	0.262	5e-13
A6QR40	652	Engulfment and cell motil	yes	no	0.881	0.205	0.268	9e-13
Q54VR8	284	ELMO domain-containing pr	no	no	0.710	0.380	0.333	8e-12
Q92556	727	Engulfment and cell motil	no	no	0.822	0.171	0.263	8e-10
Q8BPU7	727	Engulfment and cell motil	no	no	0.822	0.171	0.263	8e-10

>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 27/164 (16%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           MG+QG DP TDFR  G   L+NL+Y A+N+ + F+ ++  Q  DR   EYP A AG+ +T
Sbjct: 412 MGFQGTDPCTDFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQI-DRKEREYPTATAGIVLT 470

Query: 61  FML---IQMLDLEAVKPRTMVGAT---------------FLKFLSENESAFDLLYCITFK 102
           F L   I  +    + P     +                F      +  AF+ +YC TF+
Sbjct: 471 FELYNSIFKMGTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQ 530

Query: 103 LMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPS 146
           ++D  W  M  +YM F  +M S +  +        +T LE  P+
Sbjct: 531 ILDSTWDDMNGTYMHFQKIMSSVKNLI--------ITALESKPT 566

Functions as a negative regulator of actin polymerization. Modulates actin/myosin II at cortex actinomyosins to prevent excessive F-actin polymerization around the cell periphery, thereby maintaining proper cell shape during phagocytosis and chemotaxis.
Dictyostelium discoideum (taxid: 44689)

>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=4 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 15/137 (10%)

Query: 2   GWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT- 60
           G+Q  DP+ DFRG G + L NL++L ++     Q++L +   DR   +YPFAVAG+NI+ 
Sbjct: 411 GFQSDDPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ---DR---DYPFAVAGINISN 464

Query: 61  --FMLIQMLDLEAVKPRTMVG------ATFLKFLSENESAFDLLYCITFKLMDHQWLAMR 112
             F + Q+ +    +P           A        N+ AF+ LY + F L+DH W+ M 
Sbjct: 465 LIFEVFQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMN 524

Query: 113 ASYMDFNTVMKSTRRQL 129
           A+YM F  V+K  + QL
Sbjct: 525 ATYMMFPLVIKKLKSQL 541

Dictyostelium discoideum (taxid: 44689)

>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3 PE=2 SV=3

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 4/141 (2%)

Query: 1   MGWQGKDPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVN 58
           +G+   +P+ D      G ++L+N+LY +RN P ++   + +        E PFA   + 
Sbjct: 347 LGFSNSNPAQDLERVPPGLLALDNMLYFSRNAPSAYSRFVLENSSREDKHECPFARGSIQ 406

Query: 59  ITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDF 118
           +T +L ++L +   +P +     F       + +F  L+C+  +L++  W  MRA+  DF
Sbjct: 407 LTVLLCELLRVG--EPCSETAQDFSPMFFGQDQSFHELFCVGIQLLNKTWKEMRATQEDF 464

Query: 119 NTVMKSTRRQLERELLLEDVT 139
           + VM+  R QL R L L+  +
Sbjct: 465 DKVMQVVREQLARTLALKPTS 485

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Homo sapiens (taxid: 9606)

>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus GN=Elmo3 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 4/141 (2%)

Query: 1   MGWQGKDPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVN 58
           +G+    P+ D      G ++L+N+LY +R+ P ++   + +        E PFA + + 
Sbjct: 347 LGFSNSSPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSIQ 406

Query: 59  ITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDF 118
           +T +L ++L +   +P +     F       + +F  L+C+  +L++  W  MRA+  DF
Sbjct: 407 LTVLLCELLHVG--EPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQEDF 464

Query: 119 NTVMKSTRRQLERELLLEDVT 139
           + VM+  R QL R L L+  +
Sbjct: 465 DKVMQVVREQLARTLALKPTS 485

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Rattus norvegicus (taxid: 10116)

>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 15/130 (11%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           +G+Q KDPS+DFRG G   L++L+YLA+N    F + L  ++ + +   YP+A +G+ +T
Sbjct: 335 IGFQNKDPSSDFRGMGLAGLKHLIYLAQNHKDMFMNPLINRQPEANY--YPYATSGIQVT 392

Query: 61  FMLIQMLDLEAVKP-------RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA 113
             L+     E VKP         ++G  +   L E+E+A + +YC+  ++    W    A
Sbjct: 393 SFLV-----ECVKPINISANHSDVIGQIY-PILFESENALNEIYCVLMEIFGIVWKDWNA 446

Query: 114 SYMDFNTVMK 123
           +YM F  V +
Sbjct: 447 TYMIFQKVFQ 456

Dictyostelium discoideum (taxid: 44689)

>sp|Q8BYZ7|ELMO3_MOUSE Engulfment and cell motility protein 3 OS=Mus musculus GN=Elmo3 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 1   MGWQGKDPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVN 58
           +G+   +P+ D      G ++L+N+LY +R+ P ++   + +        E PFA + + 
Sbjct: 347 LGFSNSNPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSIQ 406

Query: 59  ITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDF 118
           +T +L ++L +   +P +     F       + +F  L+C+  +L++  W  MRA+  DF
Sbjct: 407 LTALLCELLRVG--EPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQEDF 464

Query: 119 NTVMKSTRRQLERELLLEDVT 139
           + VM+  R QL R L L+  +
Sbjct: 465 DKVMQVVREQLARTLALKPTS 485

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Mus musculus (taxid: 10090)

>sp|A6QR40|ELMO3_BOVIN Engulfment and cell motility protein 3 OS=Bos taurus GN=ELMO3 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 4/138 (2%)

Query: 1   MGWQGKDPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVN 58
           +G+   +P+ D      G ++L+N+LY +R  P ++   + +        E PFA + + 
Sbjct: 347 LGFSNSNPAQDLERVPPGLLALDNMLYFSRQAPSAYSRFVLENSSREDKHECPFARSSIQ 406

Query: 59  ITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDF 118
           +T +L  +L +   +P +     F       + +F  L+C++ +L++  W  MRA+  DF
Sbjct: 407 LTVLLCDLLHVG--EPCSETAQDFSPMFFGQDQSFHELFCVSIQLLNKTWKEMRATQEDF 464

Query: 119 NTVMKSTRRQLERELLLE 136
           + VM+  R QL R L L+
Sbjct: 465 DKVMQVVREQLARTLALK 482

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Bos taurus (taxid: 9913)

>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=4 SV=1

 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 21/129 (16%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           +G+QG DP+TDFRG G + L+NL+Y +    +  +++L+      S   YPFA+ G+NIT
Sbjct: 153 LGFQGMDPATDFRGMGILGLDNLIYFSTQHSEDAREILK---NSNSKCCYPFAITGINIT 209

Query: 61  FMLIQMLDLEAVKPRTMV-----GATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-S 114
            +++ ++D    KP   +     G+T  +F   NE     LY + F   D  + + +  S
Sbjct: 210 ALVLNLID----KPHFKIYFFKNGSTLTQF---NE-----LYSLVFISFDRFYQSKKPKS 257

Query: 115 YMDFNTVMK 123
            M+FNT+ K
Sbjct: 258 IMEFNTIKK 266

Dictyostelium discoideum (taxid: 44689)

>sp|Q92556|ELMO1_HUMAN Engulfment and cell motility protein 1 OS=Homo sapiens GN=ELMO1 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 7   DPSTDFRGG--GFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLI 64
           +P+ DF     G ++L+N+LY A++   ++  ++ +        E PF  + + +T ML 
Sbjct: 366 NPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRSSIELTKMLC 425

Query: 65  QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 124
           ++L +  +   T     F      ++ +F+  +CI  +L++  W  MRA+  DFN VM+ 
Sbjct: 426 EILKVGELPSETC--NDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATSEDFNKVMQV 483

Query: 125 TRRQLEREL 133
            + Q+ R L
Sbjct: 484 VKEQVMRAL 492

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Homo sapiens (taxid: 9606)

>sp|Q8BPU7|ELMO1_MOUSE Engulfment and cell motility protein 1 OS=Mus musculus GN=Elmo1 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 7   DPSTDFRGG--GFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLI 64
           +P+ DF     G ++L+N+LY A++   ++  ++ +        E PF  + + +T ML 
Sbjct: 366 NPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRSSIELTKMLC 425

Query: 65  QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 124
           ++L +  +   T     F      ++ +F+  +CI  +L++  W  MRA+  DFN VM+ 
Sbjct: 426 EILKVGELPSETC--NDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATSEDFNKVMQV 483

Query: 125 TRRQLEREL 133
            + Q+ R L
Sbjct: 484 VKEQVMRAL 492

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
255571033	267	ELMO domain-containing protein, putative	1.0	0.569	0.914	7e-78
356568581	266	PREDICTED: ELMO domain-containing protei	1.0	0.571	0.907	1e-77
356531822	266	PREDICTED: ELMO domain-containing protei	1.0	0.571	0.907	1e-77
297734628	287	unnamed protein product [Vitis vinifera]	1.0	0.529	0.914	2e-77
225453354	267	PREDICTED: ELMO domain-containing protei	1.0	0.569	0.914	2e-77
224063629	267	predicted protein [Populus trichocarpa]	1.0	0.569	0.901	3e-77
449445499	267	PREDICTED: ELMO domain-containing protei	1.0	0.569	0.888	3e-77
255637762	152	unknown [Glycine max]	1.0	1.0	0.901	7e-77
356520762	247	PREDICTED: ELMO domain-containing protei	1.0	0.615	0.888	1e-76
356520760	262	PREDICTED: ELMO domain-containing protei	1.0	0.580	0.888	1e-76

>gi|255571033|ref|XP_002526467.1| ELMO domain-containing protein, putative [Ricinus communis] gi|223534142|gb|EEF35858.1| ELMO domain-containing protein, putative [Ricinus communis]

 Score =  294 bits (753), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 139/152 (91%), Positives = 146/152 (96%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           MGWQGKDPSTDFRGGGFISLENLL+ A+NFP SFQDLL+K+EGDRSVWEYPFAVAGVNIT
Sbjct: 116 MGWQGKDPSTDFRGGGFISLENLLFFAKNFPTSFQDLLQKREGDRSVWEYPFAVAGVNIT 175

Query: 61  FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
           FMLIQMLDLEAVKPRTMVGA FLKFL+ENESAFDLLYCITFKLMDHQWL M ASYMDFNT
Sbjct: 176 FMLIQMLDLEAVKPRTMVGAVFLKFLTENESAFDLLYCITFKLMDHQWLNMHASYMDFNT 235

Query: 121 VMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 152
           VMKSTRRQLERELLLED+TRLEDLPSY LL+R
Sbjct: 236 VMKSTRRQLERELLLEDITRLEDLPSYGLLTR 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568581|ref|XP_003552489.1| PREDICTED: ELMO domain-containing protein A-like [Glycine max]

 Score =  294 bits (752), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 138/152 (90%), Positives = 148/152 (97%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           MGWQGKDPSTDFRGGGFISLENLL+ ARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT
Sbjct: 115 MGWQGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 174

Query: 61  FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
           FMLIQMLDLEAVKPRT+VGATFLKFL+EN+SAFDLLYCITFK+MD QWL+MRASYMDFNT
Sbjct: 175 FMLIQMLDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKMMDQQWLSMRASYMDFNT 234

Query: 121 VMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 152
           VMKSTRRQLE+ELLLED+ RLED+PSY LL+R
Sbjct: 235 VMKSTRRQLEKELLLEDIMRLEDVPSYKLLTR 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531822|ref|XP_003534475.1| PREDICTED: ELMO domain-containing protein A-like [Glycine max]

 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 138/152 (90%), Positives = 148/152 (97%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           MGWQGKDPSTDFRGGGFISLENLL+ ARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT
Sbjct: 115 MGWQGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 174

Query: 61  FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
           FMLIQMLDLEAVKPRT+VGATFLKFL+EN+SAFDLLYCITFK+MD QWL+MRASYMDFNT
Sbjct: 175 FMLIQMLDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKMMDQQWLSMRASYMDFNT 234

Query: 121 VMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 152
           VMKSTRRQLE+ELLLED+ RLED+PSY LL+R
Sbjct: 235 VMKSTRRQLEKELLLEDIMRLEDVPSYKLLTR 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734628|emb|CBI16679.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/152 (91%), Positives = 147/152 (96%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           MGWQGKDPSTDFRGGGFISLENLL+ ARN+PKSFQDLLRKQEGDR++WEYPFAVAGVNIT
Sbjct: 136 MGWQGKDPSTDFRGGGFISLENLLFFARNYPKSFQDLLRKQEGDRALWEYPFAVAGVNIT 195

Query: 61  FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
           FMLIQMLDLEAVKPR+M GA FLKFLSENESAFDLLYCITFKLMD+QWLAM ASYMDFNT
Sbjct: 196 FMLIQMLDLEAVKPRSMAGAIFLKFLSENESAFDLLYCITFKLMDNQWLAMHASYMDFNT 255

Query: 121 VMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 152
           VMKSTR QLERELLLEDV+RLEDLPSYSLL+R
Sbjct: 256 VMKSTRCQLERELLLEDVSRLEDLPSYSLLTR 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453354|ref|XP_002271650.1| PREDICTED: ELMO domain-containing protein A [Vitis vinifera]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/152 (91%), Positives = 147/152 (96%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           MGWQGKDPSTDFRGGGFISLENLL+ ARN+PKSFQDLLRKQEGDR++WEYPFAVAGVNIT
Sbjct: 116 MGWQGKDPSTDFRGGGFISLENLLFFARNYPKSFQDLLRKQEGDRALWEYPFAVAGVNIT 175

Query: 61  FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
           FMLIQMLDLEAVKPR+M GA FLKFLSENESAFDLLYCITFKLMD+QWLAM ASYMDFNT
Sbjct: 176 FMLIQMLDLEAVKPRSMAGAIFLKFLSENESAFDLLYCITFKLMDNQWLAMHASYMDFNT 235

Query: 121 VMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 152
           VMKSTR QLERELLLEDV+RLEDLPSYSLL+R
Sbjct: 236 VMKSTRCQLERELLLEDVSRLEDLPSYSLLTR 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063629|ref|XP_002301236.1| predicted protein [Populus trichocarpa] gi|222842962|gb|EEE80509.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/152 (90%), Positives = 147/152 (96%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           MGWQGKDPSTDFRGGGFISLENLL+ ARNFPKSFQDLL+K+EGDRSVWEYPFAVAGVNIT
Sbjct: 116 MGWQGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLQKREGDRSVWEYPFAVAGVNIT 175

Query: 61  FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
           FMLIQMLDLEAVKPR +VGATFLKFL+EN+SAFDLLYCITFKLMDH+WL MRASYMDFN 
Sbjct: 176 FMLIQMLDLEAVKPRALVGATFLKFLAENDSAFDLLYCITFKLMDHEWLTMRASYMDFNA 235

Query: 121 VMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 152
           VMKSTRRQLERELL ED+TRLEDLPSY+LL+R
Sbjct: 236 VMKSTRRQLERELLSEDITRLEDLPSYTLLTR 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445499|ref|XP_004140510.1| PREDICTED: ELMO domain-containing protein A-like [Cucumis sativus]

 Score =  292 bits (747), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 135/152 (88%), Positives = 149/152 (98%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           MGWQGKDPSTDFRGGGFISLENLL+ A+NFPKSFQDLLRKQEGDRS+WEYPFAVAGVNIT
Sbjct: 116 MGWQGKDPSTDFRGGGFISLENLLFFAKNFPKSFQDLLRKQEGDRSLWEYPFAVAGVNIT 175

Query: 61  FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
           FMLIQMLDLEAVKPRT+VGATFLKFL+EN+SAFDLLYCITFKLMDH+WLAM ASYMDFNT
Sbjct: 176 FMLIQMLDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKLMDHEWLAMHASYMDFNT 235

Query: 121 VMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 152
           VMK+TRRQLE+ELL+ED++RLE+LPSY LL+R
Sbjct: 236 VMKATRRQLEKELLIEDISRLEELPSYGLLNR 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637762|gb|ACU19203.1| unknown [Glycine max]

 Score =  291 bits (744), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 137/152 (90%), Positives = 147/152 (96%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           MGWQGKDPSTDFRGGGFISLENLL+ ARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT
Sbjct: 1   MGWQGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60

Query: 61  FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
           FMLIQMLDLEAVKPRT+VGATF KFL+EN+SAFDLLYCITFK+MD QWL+MRASYMDFNT
Sbjct: 61  FMLIQMLDLEAVKPRTLVGATFPKFLAENDSAFDLLYCITFKMMDQQWLSMRASYMDFNT 120

Query: 121 VMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 152
           VMKSTRRQLE+ELLLED+ RLED+PSY LL+R
Sbjct: 121 VMKSTRRQLEKELLLEDIMRLEDVPSYKLLTR 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520762|ref|XP_003529029.1| PREDICTED: ELMO domain-containing protein A-like isoform 2 [Glycine max]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/152 (88%), Positives = 144/152 (94%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           MGWQGKDPSTDFRGGGFISLEN L+ ARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT
Sbjct: 96  MGWQGKDPSTDFRGGGFISLENFLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 155

Query: 61  FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
           +MLIQMLDLEAVKPR +VGATFLKFL+ENESAFDLLYCITFKLMDHQWL+M ASYMDFN 
Sbjct: 156 YMLIQMLDLEAVKPRNLVGATFLKFLAENESAFDLLYCITFKLMDHQWLSMHASYMDFNA 215

Query: 121 VMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 152
           VMK TRRQLE+ELL+ED+ +LEDLPSY LLSR
Sbjct: 216 VMKETRRQLEKELLVEDIAQLEDLPSYKLLSR 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520760|ref|XP_003529028.1| PREDICTED: ELMO domain-containing protein A-like isoform 1 [Glycine max]

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/152 (88%), Positives = 144/152 (94%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           MGWQGKDPSTDFRGGGFISLEN L+ ARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT
Sbjct: 111 MGWQGKDPSTDFRGGGFISLENFLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 170

Query: 61  FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
           +MLIQMLDLEAVKPR +VGATFLKFL+ENESAFDLLYCITFKLMDHQWL+M ASYMDFN 
Sbjct: 171 YMLIQMLDLEAVKPRNLVGATFLKFLAENESAFDLLYCITFKLMDHQWLSMHASYMDFNA 230

Query: 121 VMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 152
           VMK TRRQLE+ELL+ED+ +LEDLPSY LLSR
Sbjct: 231 VMKETRRQLEKELLVEDIAQLEDLPSYKLLSR 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2042456	266	AT2G44770 "AT2G44770" [Arabido	1.0	0.571	0.822	2.3e-64
TAIR|locus:2081947	266	AT3G60260 "AT3G60260" [Arabido	1.0	0.571	0.809	1.1e-62
TAIR|locus:2096389	323	AT3G03610 "AT3G03610" [Arabido	0.986	0.464	0.62	1.8e-48
TAIR|locus:2019544	281	AT1G67400 [Arabidopsis thalian	0.993	0.537	0.635	1.8e-48
TAIR|locus:2020753	265	AT1G03620 "AT1G03620" [Arabido	0.986	0.566	0.602	6.2e-46
TAIR|locus:2102276	213	AT3G43400 "AT3G43400" [Arabido	0.782	0.558	0.650	1.3e-38
DICTYBASE|DDB_G0278051	977	elmoA "engulfment and cell mot	0.407	0.063	0.476	1.6e-15
DICTYBASE|DDB_G0282949	618	elmoC "engulfment and cell mot	0.763	0.187	0.358	7.5e-14
DICTYBASE|DDB_G0280179	284	elmoB "engulfment and cell mot	0.743	0.397	0.338	6.6e-13
DICTYBASE|DDB_G0280943	1267	elmoD "engulfment and cell mot	0.782	0.093	0.309	2.4e-12

TAIR|locus:2042456 AT2G44770 "AT2G44770" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 125/152 (82%), Positives = 134/152 (88%)

Query:     1 MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
             MGWQGKDPSTDFRGGGFISLENLLY ARNF KSFQDLLRKQ GDRSVWEYPFAVAG+N+T
Sbjct:   115 MGWQGKDPSTDFRGGGFISLENLLYFARNFQKSFQDLLRKQVGDRSVWEYPFAVAGINLT 174

Query:    61 FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
             FMLIQMLDLEAVKPRT+VGATFLKFLSENESAFDLLYCI FKLMD QWL+MRASYM+FNT
Sbjct:   175 FMLIQMLDLEAVKPRTIVGATFLKFLSENESAFDLLYCIAFKLMDQQWLSMRASYMEFNT 234

Query:   121 VMKSTXXXXXXXXXXXDVTRLEDLPSYSLLSR 152
             VMKST           D+  LEDLPSY+LL++
Sbjct:   235 VMKSTRRQLERELMLEDIMHLEDLPSYALLNQ 266

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2081947 AT3G60260 "AT3G60260" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 123/152 (80%), Positives = 131/152 (86%)

Query:     1 MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
             MGWQGKDPSTDFRGGGFISLENLLY AR FPKSF  LLRKQ GDRSVWEYPFAVAG+NIT
Sbjct:   115 MGWQGKDPSTDFRGGGFISLENLLYFARKFPKSFHGLLRKQVGDRSVWEYPFAVAGINIT 174

Query:    61 FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
             FMLIQMLDLEAVKPR++VG TFL+FLS NESAFDLLYCI FKLMD QWL+MRASYM+FNT
Sbjct:   175 FMLIQMLDLEAVKPRSIVGETFLRFLSVNESAFDLLYCIAFKLMDQQWLSMRASYMEFNT 234

Query:   121 VMKSTXXXXXXXXXXXDVTRLEDLPSYSLLSR 152
             VMKST           D+T LEDLPSYSLLS+
Sbjct:   235 VMKSTRRQLEREIMIEDITSLEDLPSYSLLSQ 266

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2096389 AT3G03610 "AT3G03610" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 93/150 (62%), Positives = 116/150 (77%)

Query:     1 MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
             MGWQG DPSTDFRGGG+ISLENL++ A+ +P+SFQ LL KQ+G R+ WEYPFAVAG+NI+
Sbjct:   172 MGWQGTDPSTDFRGGGYISLENLIFFAKTYPESFQRLLHKQDGTRAEWEYPFAVAGINIS 231

Query:    61 FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
             FML QMLDL++ KP T+ G  FL FL E+E AFD LYCI F++MD QWLA RASYM+FN 
Sbjct:   232 FMLAQMLDLQSGKPSTIAGIRFLGFLEEDEMAFDNLYCIAFQMMDAQWLARRASYMEFND 291

Query:   121 VMKSTXXXXXXXXXXXDVTRLEDLPSYSLL 150
             V+KST           DV+ + DLP+++LL
Sbjct:   292 VLKSTRAQLERELALDDVSSITDLPAFNLL 321

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2019544 AT1G67400 [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 96/151 (63%), Positives = 114/151 (75%)

Query:     1 MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
             MGWQGKDPSTDFRG GFISLENLL+ A+ F  SFQ LL KQ G R+ WEYPFAVAGVNIT
Sbjct:   131 MGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLNKQGGKRAAWEYPFAVAGVNIT 190

Query:    61 FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
             FM++QMLDLEA KPR+ +   FL+ LSE+E AFDLLYC+ F +MD QWL   A+YM+FN 
Sbjct:   191 FMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFDLLYCVAFVVMDKQWLDKNATYMEFND 250

Query:   121 VMKSTXXXXXXXXXXXDVTRLEDLPSYSLLS 151
             V++ T           DV R+ED+PS+SLLS
Sbjct:   251 VLRCTRGQLERELMMDDVFRIEDMPSFSLLS 281

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2020753 AT1G03620 "AT1G03620" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 91/151 (60%), Positives = 114/151 (75%)

Query:     1 MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
             MGWQG +PSTDFRG GFI+LENLL+ AR +P  F+ LL KQ GDR+ WEYPFAVAG+NI+
Sbjct:   113 MGWQGPNPSTDFRGCGFIALENLLFSARTYPVCFRRLLLKQRGDRAKWEYPFAVAGINIS 172

Query:    61 FMLIQMLDLEA-VKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFN 119
             FMLIQMLDL+   KP+ + G  FLK L E+E AFD+LYCI F +MD QWLAM ASYM+FN
Sbjct:   173 FMLIQMLDLQNNPKPKCLPGMNFLKLLEEDERAFDVLYCIAFAMMDAQWLAMHASYMEFN 232

Query:   120 TVMKSTXXXXXXXXXXXDVTRLEDLPSYSLL 150
              V+++T           D+ R++DLP+Y+LL
Sbjct:   233 EVLQATRNQLERELSLDDIHRIQDLPAYNLL 263

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2102276 AT3G43400 "AT3G43400" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 80/123 (65%), Positives = 95/123 (77%)

Query:     1 MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
             MGWQ KDPSTDFRG GFISLENL    R F K+F  LL+KQ G R+ WEYPFAVAGVNIT
Sbjct:    89 MGWQRKDPSTDFRGDGFISLENL----RFFAKTFSRLLKKQGGKRAAWEYPFAVAGVNIT 144

Query:    61 FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
             FM++QMLDLEA KPR+ +   FL+ LSE+E AF LLYC+ F +MD QWL   A+YM+FN 
Sbjct:   145 FMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFGLLYCVAFVVMDKQWLDKNATYMEFND 204

Query:   121 VMK 123
             V++
Sbjct:   205 VLR 207

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

DICTYBASE|DDB_G0278051 elmoA "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 148 (57.2 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
 Identities = 30/63 (47%), Positives = 41/63 (65%)

Query:     1 MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
             MG+QG DP TDFR  G   L+NL+Y A+N+ + F+ ++  Q  DR   EYP A AG+ +T
Sbjct:   412 MGFQGTDPCTDFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQI-DRKEREYPTATAGIVLT 470

Query:    61 FML 63
             F L
Sbjct:   471 FEL 473

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0050764 "regulation of phagocytosis" evidence=IMP

GO:0048870 "cell motility" evidence=IMP

GO:0045159 "myosin II binding" evidence=IPI

GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP

GO:0030587 "sorocarp development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0282949 elmoC "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 189 (71.6 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 47/131 (35%), Positives = 76/131 (58%)

Query:     2 GWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT- 60
             G+Q  DP+ DFRG G + L NL++L ++     Q++L +   DR   +YPFAVAG+NI+ 
Sbjct:   411 GFQSDDPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ---DR---DYPFAVAGINISN 464

Query:    61 --FMLIQMLDLEAVKP--RTMVGATFLKFLSE----NESAFDLLYCITFKLMDHQWLAMR 112
               F + Q+ +    +P   +   ++++  L      N+ AF+ LY + F L+DH W+ M 
Sbjct:   465 LIFEVFQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMN 524

Query:   113 ASYMDFNTVMK 123
             A+YM F  V+K
Sbjct:   525 ATYMMFPLVIK 535

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0280179 elmoB "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 6.6e-13, P = 6.6e-13
 Identities = 42/124 (33%), Positives = 70/124 (56%)

Query:     1 MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
             +G+QG DP+TDFRG G + L+NL+Y +    +  +++L+      S   YPFA+ G+NIT
Sbjct:   153 LGFQGMDPATDFRGMGILGLDNLIYFSTQHSEDAREILKNSN---SKCCYPFAITGINIT 209

Query:    61 FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFN 119
              +++ ++D    KP   +   F K  S   + F+ LY + F   D  + + +  S M+FN
Sbjct:   210 ALVLNLID----KPHFKI--YFFKNGS-TLTQFNELYSLVFISFDRFYQSKKPKSIMEFN 262

Query:   120 TVMK 123
             T+ K
Sbjct:   263 TIKK 266

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0280943 elmoD "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 179 (68.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 39/126 (30%), Positives = 72/126 (57%)

Query:     1 MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
             +G+Q KDPS+DFRG G   L++L+YLA+N    F + L  ++ + +   YP+A +G+ +T
Sbjct:   335 IGFQNKDPSSDFRGMGLAGLKHLIYLAQNHKDMFMNPLINRQPEANY--YPYATSGIQVT 392

Query:    61 FMLIQM---LDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMD 117
               L++    +++ A     ++G  +   L E+E+A + +YC+  ++    W    A+YM 
Sbjct:   393 SFLVECVKPINISA-NHSDVIGQIY-PILFESENALNEIYCVLMEIFGIVWKDWNATYMI 450

Query:   118 FNTVMK 123
             F  V +
Sbjct:   451 FQKVFQ 456

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
pfam04727	170	pfam04727, ELMO_CED12, ELMO/CED-12 family	2e-49

>gnl|CDD|218231 pfam04727, ELMO_CED12, ELMO/CED-12 family

 Score =  155 bits (395), Expect = 2e-49
 Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 1   MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT 60
           +G+QG DP+TDFRG G + L NLLY A N+P  FQ LL +     +  EYPFAVA +N+T
Sbjct: 49  LGFQGDDPATDFRGTGLLGLLNLLYFAENYPDEFQKLLLESSHRPAEHEYPFAVASINVT 108

Query: 61  FMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNT 120
            ML ++L +  +         F         AF+ LYC  F L D  W  MRA+ MDFN 
Sbjct: 109 SMLYELLRIGKLDQEDYKNYGF-PLFFPTLLAFEELYCALFHLFDRFWKEMRATIMDFNK 167

Query: 121 VMK 123
           V++
Sbjct: 168 VLE 170

This family represents a conserved domain which is found in a number of eukaryotic proteins including CED-12, ELMO I and ELMO II. ELMO1 is a component of signalling pathways that regulate phagocytosis and cell migration and is the mammalian orthologue of the C. elegans gene, ced-12. CED-12 is required for the engulfment of dying cells and cell migration. In mammalian cells, ELMO1 interacts with Dock180 as part of the CrkII/Dock180/Rac pathway responsible for phagocytosis and cell migration. ELMO1 is ubiquitously expressed, although its expression is highest in the spleen, an organ rich in immune cells. ELMO1 has a PH domain and a polyproline sequence motif at its C terminus which are not present in this alignment. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
KOG2998	302	consensus Uncharacterized conserved protein [Funct	100.0
PF04727	170	ELMO_CED12: ELMO/CED-12 family; InterPro: IPR00681	100.0
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	100.0

>KOG2998 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.3e-46  Score=296.21  Aligned_cols=144  Identities=63%  Similarity=1.016  Sum_probs=132.2

Q ss_pred             CCCCCCCCCCcccchhHHHHHHHHHHHhhCcHHHHHHHHHhcCCCCcccchHHHHhHHHHHHHHHHhhhccCCCCc-ccc
Q 031805            1 MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRT-MVG   79 (152)
Q Consensus         1 lGFQ~~dP~tDfRg~GiLgL~~L~~f~~~~~~~~~~il~~~~~~~~~~~yPfA~~~InvT~~l~~~l~~~~~~~~~-~~~   79 (152)
                      |||||+||+|||||+|+|||+||+||+++||+.+++++..|.  ++.++||||+||||||.|++++|+.+.++.++ +..
T Consensus       157 mGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~s~--~~r~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~~  234 (302)
T KOG2998|consen  157 MGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLKSR--HPRWEYPFAVVGINITFMAIQMLDLEALKKHFNNIV  234 (302)
T ss_pred             hccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHhcC--CCccCCceEEEeecHHHHHHHHHHhhhccccccccc
Confidence            799999999999999999999999999999999999999874  56789999999999999999999998875443 333


Q ss_pred             hhhhhhcccchhhHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHhhcccCCCCCCCCCcccccc
Q 031805           80 ATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPSYSLLS  151 (152)
Q Consensus        80 ~~f~~l~~~~~~~f~el~~~~f~~F~~~W~~~~at~mdF~~V~~~~r~~l~~~L~~~~v~~~~~~~~~~~~~  151 (152)
                      ..|     +++.+|+.+||++|..||+.|.++++||||||.|++.+|.|+++.|...++..++|+|+|.+|.
T Consensus       235 ~~~-----~~~~~F~~lYc~af~~~d~~Wl~~~~simefn~Vlk~~~~qler~L~~~d~~~~~~lp~~~~L~  301 (302)
T KOG2998|consen  235 KVF-----ETEPAFDLLYCYAFLEFDKQWLEQRATIMEFNTVLKSFRRQLERELSLDDVLLITDLPAFNLLL  301 (302)
T ss_pred             ccc-----ccHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhc
Confidence            333     6778999999999999999999999999999999999999999999999999999999999885

>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2

Probab=100.00  E-value=1.3e-41  Score=256.59  Aligned_cols=121  Identities=41%  Similarity=0.773  Sum_probs=105.6

Q ss_pred             CCCCCCCCCCcccchhHHHHHHHHHHHhhCcHHHHHHHHHhcCCCCcccchHHHHhHHHHHHHHHHhhhccCCCCcccch
Q 031805            1 MGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGA   80 (152)
Q Consensus         1 lGFQ~~dP~tDfRg~GiLgL~~L~~f~~~~~~~~~~il~~~~~~~~~~~yPfA~~~InvT~~l~~~l~~~~~~~~~~~~~   80 (152)
                      |||||+||+|||||+|+|||+||+||+++||+.+++|+.+|.++.+.++||||+||||||.+|+++++.+...+...  .
T Consensus        49 lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~--~  126 (170)
T PF04727_consen   49 LGFQGEDPATDFRGMGLLGLDCLLYFAENYPDEFRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFY--K  126 (170)
T ss_pred             hCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHHHHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHh--h
Confidence            79999999999999999999999999999999999999999877666899999999999999999999865432221  1


Q ss_pred             hhhhh-cccchhhHHHHHHHHHHHHHHHHhhCCCChhhHHHHHH
Q 031805           81 TFLKF-LSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK  123 (152)
Q Consensus        81 ~f~~l-~~~~~~~f~el~~~~f~~F~~~W~~~~at~mdF~~V~~  123 (152)
                      .+... +.+.+.+|++|||.+|..|+++|+++++++|||++|++
T Consensus       127 ~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~at~~dF~~V~~  170 (170)
T PF04727_consen  127 RINFLSFFSSLEAFEELFCACFQLFDRTWKEMNATIMDFNKVLK  170 (170)
T ss_pred             cccccccCccHHHHHHHHHHHHHHHHHHHccCCCCHHHHHhhcC
Confidence            11111 45677899999999999999999999999999999974

ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-33  Score=240.65  Aligned_cols=143  Identities=28%  Similarity=0.606  Sum_probs=133.3

Q ss_pred             CCCCC-CCCCCccc--chhHHHHHHHHHHHhhCcHHHHHHHHHhcCCCCcccchHHHHhHHHHHHHHHHhhhccCCCCcc
Q 031805            1 MGWQG-KDPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTM   77 (152)
Q Consensus         1 lGFQ~-~dP~tDfR--g~GiLgL~~L~~f~~~~~~~~~~il~~~~~~~~~~~yPfA~~~InvT~~l~~~l~~~~~~~~~~   77 (152)
                      +||.. .||+.||-  .+|+|+|+||+||+++||+.+.+|+.++.+|.++++|||+..+|.+|.+||++|+.++  +++.
T Consensus       343 lgf~n~~npa~df~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge--~p~E  420 (713)
T KOG2999|consen  343 LGFENRINPAQDFGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGE--PPDE  420 (713)
T ss_pred             hcccccCChHHhcccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCC--Cchh
Confidence            69998 59999996  7799999999999999999999999999999999999999999999999999999875  4455


Q ss_pred             cchhhhhhcccchhhHHHHHHHHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHhhcccCCCCCCCCCc
Q 031805           78 VGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPS  146 (152)
Q Consensus        78 ~~~~f~~l~~~~~~~f~el~~~~f~~F~~~W~~~~at~mdF~~V~~~~r~~l~~~L~~~~v~~~~~~~~  146 (152)
                      ....|+|+||.++.+|+|+||.|.++|+++|+||.||-.||+||+..||+||.|+|..+ ++++|++++
T Consensus       421 ~~~df~pmfFthd~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~fks  488 (713)
T KOG2999|consen  421 LDRDFIPMFFTHDTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQFKS  488 (713)
T ss_pred             hcCccceeeecCCCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHHHH
Confidence            55679999999999999999999999999999999999999999999999999999997 888887764

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00