Citrus Sinensis ID: 031864

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MASSALSISSSSTLVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
massalsisssstlvdakaprqsapastqcvslptlppppvpsqtrpwkatTYCRKMARNVMAMAtgeapaevaaTELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWgstgmisaidrlplvpgvLELVGIGYTGWFAYKNLVFKPDR
Flexible Loop (DISEMBL)
massalsisssstlvdakaprqsapastqcvslptlppppvpsqtrpwKATTYCRKMARNVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR
Low Complexity Region (SEG)
MassalsissssTLVDAKAPRQSAPASTQCvslptlppppvpsqtrpWKATTYCRKMARNVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRlplvpgvlelvgIGYTGWFAYKNLVFKPDR
Disordered region (IsUnstruct)
***********************************************WKATTYCRKMARNVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVF****
Disordered Region (DISOPRED)
********SS**********************************************************************IVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKP**
Disordered Region (DISEMBL)
******************************VSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR
Disordered Region (DISPRO)
**********************************T***********PWKATTYCRKMARNVMAMATGE******ATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKP**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSALSISSSSTLVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q8LCA1	174	Thylakoid membrane phosph	yes	no	0.920	0.798	0.623	4e-38
O04616	164	Uncharacterized protein A	no	no	0.947	0.871	0.355	2e-17

>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2

 Score =  156 bits (395), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 105/146 (71%), Gaps = 7/146 (4%)

Query: 13  TLVDAKAP-RQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEA-- 69
           T++D++AP  + A AS    S  +LP  P+ S TR  KAT YCRK+ RNV+  AT E   
Sbjct: 11  TIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGE 70

Query: 70  ----PAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLV 125
                 E   TELPEIVKT QEAW+KV+DKYA+ SLA    +A+WGS GMISAIDRLPLV
Sbjct: 71  APATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLV 130

Query: 126 PGVLELVGIGYTGWFAYKNLVFKPDR 151
           PGVLELVGIGYTGWF YKNLVFKPDR
Sbjct: 131 PGVLELVGIGYTGWFTYKNLVFKPDR 156

Arabidopsis thaliana (taxid: 3702)

>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 6/149 (4%)

Query: 5   ALSISSSSTLVDAKAPRQSAPASTQCVSLPTLPPPPV--PSQTRPWKATTYCRKMARNVM 62
           A+S+++SS++     PR  A  ST+C ++P LPP      S T P K  +      + V 
Sbjct: 2   AISVAASSSMA-VMVPRVPA-VSTRCSAVPYLPPRSFGRSSFTVPLKLVS--GNGLQKVE 57

Query: 63  AMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRL 122
            + T  +  E ++ +  E++  ++E WD +E+K  V        +AVW S+ ++ AI+ +
Sbjct: 58  LLKTRASSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query: 123 PLVPGVLELVGIGYTGWFAYKNLVFKPDR 151
           PL+P V+ELVG+GYTGWF Y+ L+FK  R
Sbjct: 118 PLLPKVMELVGLGYTGWFVYRYLLFKSSR 146

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
224128069	172	predicted protein [Populus trichocarpa]	0.900	0.790	0.852	3e-54
118486729	172	unknown [Populus trichocarpa]	0.900	0.790	0.845	3e-54
225453634	171	PREDICTED: thylakoid membrane phosphopro	0.900	0.795	0.801	1e-52
147785076	171	hypothetical protein VITISV_028013 [Viti	0.900	0.795	0.801	2e-52
356559599	168	PREDICTED: thylakoid membrane phosphopro	0.894	0.803	0.717	7e-52
224064380	172	predicted protein [Populus trichocarpa]	0.900	0.790	0.786	4e-48
449445535	175	PREDICTED: thylakoid membrane phosphopro	0.887	0.765	0.715	6e-48
357512647	180	Thylakoid membrane phosphoprotein 14 kDa	0.880	0.738	0.618	2e-45
388514305	163	unknown [Lotus japonicus]	0.854	0.791	0.666	2e-44
351723855	169	uncharacterized protein LOC100306676 [Gl	0.841	0.751	0.701	2e-43

>gi|224128069|ref|XP_002320236.1| predicted protein [Populus trichocarpa] gi|222861009|gb|EEE98551.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/136 (85%), Positives = 124/136 (91%)

Query: 16  DAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAA 75
           DAKA RQSA AS QCVSLPTLPPPPV  Q RPWKAT YCRK+ARNVM MATGEAPAEVA+
Sbjct: 19  DAKASRQSAAASPQCVSLPTLPPPPVQPQNRPWKATAYCRKIARNVMTMATGEAPAEVAS 78

Query: 76  TELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIG 135
           TELPEIVKTVQEAWDKVEDKYAV+SL V   +A+WGSTG+ISAIDRLPL+PGVLELVGIG
Sbjct: 79  TELPEIVKTVQEAWDKVEDKYAVSSLVVAGGVALWGSTGLISAIDRLPLIPGVLELVGIG 138

Query: 136 YTGWFAYKNLVFKPDR 151
           Y+GWFAYKNLVFKPDR
Sbjct: 139 YSGWFAYKNLVFKPDR 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486729|gb|ABK95200.1| unknown [Populus trichocarpa]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 115/136 (84%), Positives = 123/136 (90%)

Query: 16  DAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAA 75
           DAKA RQSA AS QCVSLPTLPPPPV  Q  PWKAT YCRK+ARNVM MATGEAPAEVA+
Sbjct: 19  DAKASRQSAAASPQCVSLPTLPPPPVQPQNGPWKATAYCRKIARNVMTMATGEAPAEVAS 78

Query: 76  TELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIG 135
           TELPEIVKTVQEAWDKVEDKYAV+SL V   +A+WGSTG+ISAIDRLPL+PGVLELVGIG
Sbjct: 79  TELPEIVKTVQEAWDKVEDKYAVSSLVVAGGVALWGSTGLISAIDRLPLIPGVLELVGIG 138

Query: 136 YTGWFAYKNLVFKPDR 151
           Y+GWFAYKNLVFKPDR
Sbjct: 139 YSGWFAYKNLVFKPDR 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453634|ref|XP_002266107.1| PREDICTED: thylakoid membrane phosphoprotein 14 kDa, chloroplastic [Vitis vinifera] gi|296089017|emb|CBI38720.3| unnamed protein product [Vitis vinifera]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/136 (80%), Positives = 123/136 (90%)

Query: 16  DAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAA 75
           D KAPRQSA AS+QCV+LPTLPPPPVPSQ RP K TTYCRK+ARNV+AMATGEAPAEV  
Sbjct: 18  DGKAPRQSAAASSQCVTLPTLPPPPVPSQHRPGKGTTYCRKIARNVIAMATGEAPAEVGT 77

Query: 76  TELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIG 135
           TE+PEI+KTVQEAWDKVEDKYAV+SLA    + +W STGM+SAID+LPLVPGVLE+VGIG
Sbjct: 78  TEVPEIIKTVQEAWDKVEDKYAVSSLAAAGFVGLWVSTGMVSAIDKLPLVPGVLEIVGIG 137

Query: 136 YTGWFAYKNLVFKPDR 151
           Y+GWFAYKNL+FKPDR
Sbjct: 138 YSGWFAYKNLIFKPDR 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785076|emb|CAN75451.1| hypothetical protein VITISV_028013 [Vitis vinifera]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/136 (80%), Positives = 123/136 (90%)

Query: 16  DAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAA 75
           D KAPRQSA AS+QCV+LPTLPPPPVPSQ RP K TTYCRK+ARNV+AMATGEAPAEV  
Sbjct: 18  DGKAPRQSAAASSQCVTLPTLPPPPVPSQXRPGKGTTYCRKIARNVIAMATGEAPAEVGT 77

Query: 76  TELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIG 135
           TE+PEI+KTVQEAWDKVEDKYAV+SLA    + +W STGM+SAID+LPLVPGVLE+VGIG
Sbjct: 78  TEVPEIIKTVQEAWDKVEDKYAVSSLAAAGFVGLWVSTGMVSAIDKLPLVPGVLEIVGIG 137

Query: 136 YTGWFAYKNLVFKPDR 151
           Y+GWFAYKNL+FKPDR
Sbjct: 138 YSGWFAYKNLIFKPDR 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559599|ref|XP_003548086.1| PREDICTED: thylakoid membrane phosphoprotein 14 kDa, chloroplastic-like [Glycine max]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 114/138 (82%), Gaps = 3/138 (2%)

Query: 14  LVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEV 73
           L D KAPRQS  AS QCVSLP+   P + SQ   WK T YCR +ARNVMAMATGEAPAE 
Sbjct: 16  LHDCKAPRQSPAASPQCVSLPS---PLLHSQNCSWKTTAYCRSIARNVMAMATGEAPAEA 72

Query: 74  AATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVG 133
           A TE+PEIVKT+QE WDKV+DKYAV+SLA+   +A+WGS G+ISAIDRLPL+PG+LE+VG
Sbjct: 73  APTEVPEIVKTLQETWDKVDDKYAVSSLALVGVVALWGSVGLISAIDRLPLIPGILEIVG 132

Query: 134 IGYTGWFAYKNLVFKPDR 151
           IGYTGWF YKN+VFKPDR
Sbjct: 133 IGYTGWFVYKNIVFKPDR 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064380|ref|XP_002301447.1| predicted protein [Populus trichocarpa] gi|118489574|gb|ABK96589.1| unknown [Populus trichocarpa x Populus deltoides] gi|222843173|gb|EEE80720.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/136 (78%), Positives = 117/136 (86%)

Query: 16  DAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAA 75
           DAKA R SA AS QCVSLPTLPPPPV  + RPWKA  YCRK+ARNVM MATGEAP  VA+
Sbjct: 19  DAKASRLSAVASPQCVSLPTLPPPPVQPRNRPWKAAAYCRKIARNVMTMATGEAPVAVAS 78

Query: 76  TELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIG 135
           T+LPEIVKTVQEAWDKVEDKYAV+S+ V   +A+WGS G ISAI+RLPL+PGVLEL GIG
Sbjct: 79  TDLPEIVKTVQEAWDKVEDKYAVSSVVVAGGVALWGSAGFISAIERLPLIPGVLELAGIG 138

Query: 136 YTGWFAYKNLVFKPDR 151
           YTGWFAYKNLVFKPDR
Sbjct: 139 YTGWFAYKNLVFKPDR 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445535|ref|XP_004140528.1| PREDICTED: thylakoid membrane phosphoprotein 14 kDa, chloroplastic-like [Cucumis sativus] gi|449518976|ref|XP_004166511.1| PREDICTED: thylakoid membrane phosphoprotein 14 kDa, chloroplastic-like [Cucumis sativus]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/137 (71%), Positives = 110/137 (80%), Gaps = 3/137 (2%)

Query: 18  KAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAATE 77
           KAPRQSA  S+         PP   SQ RPWK+T YCRK+ARNVM MATGE PAEVAA E
Sbjct: 21  KAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIARNVMGMATGEVPAEVAAGE 80

Query: 78  L---PEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGI 134
           L   PEIVK VQEAWDKVEDKYAV+SLAV+  +A+W S G++SAIDRLPLVPG+LELVGI
Sbjct: 81  LAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGI 140

Query: 135 GYTGWFAYKNLVFKPDR 151
           GYTGWFAYKNL+F+PDR
Sbjct: 141 GYTGWFAYKNLIFRPDR 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512647|ref|XP_003626612.1| Thylakoid membrane phosphoprotein 14 kDa [Medicago truncatula] gi|87240857|gb|ABD32715.1| thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative [Medicago truncatula] gi|217075606|gb|ACJ86163.1| unknown [Medicago truncatula] gi|355501627|gb|AES82830.1| Thylakoid membrane phosphoprotein 14 kDa [Medicago truncatula] gi|388499700|gb|AFK37916.1| unknown [Medicago truncatula]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 113/152 (74%), Gaps = 19/152 (12%)

Query: 14  LVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMA---TGEAP 70
           LVD K P + + AS QCVSLP     P+ S TRPWK T +CRK+ARNV++MA   T E  
Sbjct: 15  LVDGKPPCRHSAASPQCVSLP-----PLQSHTRPWKTTAFCRKIARNVISMASSTTTETE 69

Query: 71  AEVAATEL-----------PEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAI 119
           A+ A TE+           PE+VKT+Q+ WDKVEDKYAV++LAV   +A+WGS G+ISAI
Sbjct: 70  ADAATTEVASTDPSTVTDSPELVKTIQQTWDKVEDKYAVSALAVAGTVALWGSAGVISAI 129

Query: 120 DRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR 151
           DRLPL+PGVLELVGIGYTGWFAYKNLVFKP+R
Sbjct: 130 DRLPLIPGVLELVGIGYTGWFAYKNLVFKPER 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514305|gb|AFK45214.1| unknown [Lotus japonicus]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/138 (66%), Positives = 104/138 (75%), Gaps = 9/138 (6%)

Query: 14  LVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEV 73
           L+D KAPRQ   AS QCVS P         Q R  K T +CRK+ARNV AMATGE  AEV
Sbjct: 17  LLDGKAPRQPPSASPQCVSFP---------QNRQLKTTVHCRKIARNVKAMATGETSAEV 67

Query: 74  AATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVG 133
             TELPE VK +QE WDKV+DKYAV S+ V   +A+W STG++SAID+LPL+PGVLELVG
Sbjct: 68  DTTELPEFVKNLQETWDKVDDKYAVGSVVVASVLALWASTGLLSAIDKLPLIPGVLELVG 127

Query: 134 IGYTGWFAYKNLVFKPDR 151
           IGYTGWFAYKNLVFKPDR
Sbjct: 128 IGYTGWFAYKNLVFKPDR 145

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723855|ref|NP_001238573.1| uncharacterized protein LOC100306676 [Glycine max] gi|255629249|gb|ACU14969.1| unknown [Glycine max]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/144 (70%), Positives = 111/144 (77%), Gaps = 17/144 (11%)

Query: 15  VDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATG-EAPA-E 72
           VDAKAP  S   S QCVS     PPPV S   PWK T +CR++A NVMAMAT  EAPA E
Sbjct: 18  VDAKAP--SPRQSPQCVS-----PPPVHS---PWKTTAFCRRIASNVMAMATTREAPAAE 67

Query: 73  VAATEL-----PEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPG 127
           VA TEL     PEIVKT+QEAWDKVEDKYAV+SLAV   +A+ GS GMISAIDRLPL+PG
Sbjct: 68  VATTELSVAETPEIVKTIQEAWDKVEDKYAVSSLAVAGVVALVGSAGMISAIDRLPLIPG 127

Query: 128 VLELVGIGYTGWFAYKNLVFKPDR 151
           VLE+VGIGY+GWFAYKNL FKPDR
Sbjct: 128 VLEVVGIGYSGWFAYKNLFFKPDR 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2044335	174	PSI-P "photosystem I P subunit	0.920	0.798	0.520	1.6e-31
TAIR|locus:2037435	156	AT1G52220 "AT1G52220" [Arabido	0.589	0.570	0.347	8.2e-12
TAIR|locus:2125018	164	AT4G01150 "AT4G01150" [Arabido	0.615	0.567	0.290	1.6e-08

TAIR|locus:2044335 PSI-P "photosystem I P subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 76/146 (52%), Positives = 88/146 (60%)

Query:    13 TLVDAKAP-RQSAPASTQCXXXXXXXXXXXXXXXXXWKATTYCRKMARNVMAMAT---GE 68
             T++D++AP  + A AS                     KAT YCRK+ RNV+  AT   GE
Sbjct:    11 TIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGE 70

Query:    69 APA---EVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRXXXX 125
             APA   E   TELPEIVKT QEAW+KV+DKYA+ SLA    +A+WGS GMISAIDR    
Sbjct:    71 APATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLV 130

Query:   126 XXXXXXXXIGYTGWFAYKNLVFKPDR 151
                     IGYTGWF YKNLVFKPDR
Sbjct:   131 PGVLELVGIGYTGWFTYKNLVFKPDR 156

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=ISS;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IDA

GO:0030093 "chloroplast photosystem I" evidence=IMP;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2037435 AT1G52220 "AT1G52220" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 32/92 (34%), Positives = 53/92 (57%)

Query:    60 NVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAI 119
             ++M  A+GE+    ++T+L ++V T+Q  WDK ED+  +  L     +A+W S  +I+AI
Sbjct:    51 SLMVKASGESSD--SSTDL-DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAI 107

Query:   120 DRXXXXXXXXXXXXIGYTGWFAYKNLVFKPDR 151
             D+            I ++ WF Y+ L+FKPDR
Sbjct:   108 DKLPVISSGFELVGILFSTWFTYRYLLFKPDR 139

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2125018 AT4G01150 "AT4G01150" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/93 (29%), Positives = 47/93 (50%)

Query:    59 RNVMAMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISA 118
             + V  + T  +  E ++ +  E++  ++E WD +E+K  V        +AVW S+ ++ A
Sbjct:    54 QKVELLKTRASSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGA 113

Query:   119 IDRXXXXXXXXXXXXIGYTGWFAYKNLVFKPDR 151
             I+             +GYTGWF Y+ L+FK  R
Sbjct:   114 INSVPLLPKVMELVGLGYTGWFVYRYLLFKSSR 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.126   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       111   0.00091  102 3  11 22  0.44    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  124 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.88u 0.17s 10.05t   Elapsed:  00:00:01
  Total cpu time:  9.88u 0.17s 10.05t   Elapsed:  00:00:01
  Start:  Fri May 10 04:58:33 2013   End:  Fri May 10 04:58:34 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LCA1	TMP14_ARATH	No assigned EC number	0.6232	0.9205	0.7988	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0061001101	SubName- Full=Putative uncharacterized protein; (172 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_X2323	hypothetical protein (243 aa)			•	•					0.519
	eugene3.00070463	hypothetical protein (187 aa)			•						0.505
	estExt_Genewise1_v1.C_LG_X2901	hypothetical protein (169 aa)			•						0.505
	fgenesh4_pm.C_LG_VI000258	hypothetical protein (443 aa)			•						0.499
	gw1.164.72.1	hypothetical protein (397 aa)			•						0.498
	estExt_fgenesh4_pg.C_LG_X1962	hypothetical protein (190 aa)			•						0.497
	fgenesh4_pm.C_LG_II001205	RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)			•	•			•		0.497
	eugene3.00050871	hypothetical protein (194 aa)			•						0.494
	estExt_Genewise1_v1.C_LG_V0741	photosystem II protein Psb27 (175 aa)			•	•					0.492
	gw1.226.9.1	annotation not avaliable (156 aa)			•						0.492

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
PLN02777	167	PLN02777, PLN02777, photosystem I P subunit (PSI-P	2e-85
pfam14159	90	pfam14159, DUF4308, Domain of unknown function (DU	9e-29

>gnl|CDD|178376 PLN02777, PLN02777, photosystem I P subunit (PSI-P)

 Score =  247 bits (631), Expect = 2e-85
 Identities = 123/149 (82%), Positives = 131/149 (87%)

Query: 3   SSALSISSSSTLVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVM 62
            + LSISSSSTL+D+KAPR SA AS QCVSLPTLPPPPV S  RP KAT YCRK+ARNV+
Sbjct: 1   MTPLSISSSSTLIDSKAPRSSAAASPQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVV 60

Query: 63  AMATGEAPAEVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRL 122
            MATGEAPAEV  TELPEIVKTVQEAWDKVEDKYAV+SLA    +A+WGS GMISAIDRL
Sbjct: 61  TMATGEAPAEVETTELPEIVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRL 120

Query: 123 PLVPGVLELVGIGYTGWFAYKNLVFKPDR 151
           PLVPGVLELVGIGYTGWFAYKNLVFKPDR
Sbjct: 121 PLVPGVLELVGIGYTGWFAYKNLVFKPDR 149

Length = 167

>gnl|CDD|222574 pfam14159, DUF4308, Domain of unknown function (DUF4308)

 Score =  100 bits (252), Expect = 9e-29
 Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 4/74 (5%)

Query: 82  VKTVQEAWDKVEDKYAVTSLAV----TVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYT 137
           +K +   W K EDKY    L V     V +A+W S  ++ AID +PL+PG+LELVG+GY+
Sbjct: 1   LKKLPNYWGKFEDKYKRPLLGVGAIIAVIVALWLSAAVLDAIDSIPLLPGLLELVGLGYS 60

Query: 138 GWFAYKNLVFKPDR 151
           GWF Y+ L+F  DR
Sbjct: 61  GWFVYRYLLFSEDR 74

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 90 amino acids in length. The domain is found in several amino-acyl tRNA synthetase enzymes as well as in isolation in single domain proteins. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
PLN02777	167	photosystem I P subunit (PSI-P)	100.0
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	99.93
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	89.76

>PLN02777 photosystem I P subunit (PSI-P)

Probab=100.00  E-value=3.8e-58  Score=366.95  Aligned_cols=149  Identities=83%  Similarity=1.280  Sum_probs=145.8

Q ss_pred             CCccccccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHhcCCcccccccchHH
Q 031864            1 MASSALSISSSSTLVDAKAPRQSAPASTQCVSLPTLPPPPVPSQTRPWKATTYCRKMARNVMAMATGEAPAEVAATELPE   80 (151)
Q Consensus         1 ma~~~~~~~~~~~~~~~k~~~~~~~~~~~~~sLp~LPp~~~~s~~~~~k~~~~~r~~ar~v~~~a~~e~~~~~~~~~~~e   80 (151)
                      |++  |++++||+++|+|+|++++++++||.+||.||||+.++|+++||+++||||++|+|++||+||+++++++++++|
T Consensus         1 ~~~--l~~~~~~~~~~~~~~~~~~a~~~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv~~a~ge~s~~~~~~~~~e   78 (167)
T PLN02777          1 MTP--LSISSSSTLIDSKAPRSSAAASPQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPE   78 (167)
T ss_pred             CCc--cccccccccccCCCCCcCcccCCccccCCCCCCCCcccCCCcchhHHHHHHhHHHHHHHhccCCCcccccccHHH
Confidence            555  999999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhhheehhhhhhcccCCCC
Q 031864           81 IVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR  151 (151)
Q Consensus        81 ~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WF~yRyLlf~~~R  151 (151)
                      +++++||+||+.|||++++++++++||++|++.+||+|||+|||+|++||||||||++||+||||+|++||
T Consensus        79 i~k~~~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~R  149 (167)
T PLN02777         79 IVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR  149 (167)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=99.93  E-value=7.2e-27  Score=170.03  Aligned_cols=71  Identities=39%  Similarity=0.825  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhhheehhhhhhcccCCCC
Q 031864           81 IVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDR  151 (151)
Q Consensus        81 ~v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WF~yRyLlf~~~R  151 (151)
                      +-+.+.+.|+++++++..+++++++++++|++.+|++|||+||++|++|||||+||++||+||||+|++||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R   74 (90)
T PF14159_consen    4 LPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENR   74 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhH
Confidence            33455555778888999999999999999999999999999999999999999999999999999999998

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=89.76  E-value=0.7  Score=33.77  Aligned_cols=45  Identities=27%  Similarity=0.409  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCcc
Q 031864           82 VKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISA-IDRLPLVP  126 (151)
Q Consensus        82 v~~l~~~Wd~~edk~~~~~l~~~aival~~~~~vl~A-Id~iPLlp  126 (151)
                      ++++++.|++.++++....+.+++++++-+..-+..+ +|.|--+|
T Consensus         1 l~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iP   46 (90)
T PF14159_consen    1 LSKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIP   46 (90)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            3689999999999999999999998888777766554 56565555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00