Citrus Sinensis ID: 031875

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MASASAETASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC
Secondary Structure (PSIPRED)
ccccccccccccHHHHcccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEccccEEEEEEcccEEEEEcHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHccccHHHccccccccccccccccccHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEEEEEccccEEEEEEcccHEEEccHHHHHHHHHccc
Coil and Loop (DISEMBL)
masasaetasssseiataaasptterrgipaaqFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKeggealtadfevsegifsrariedtdSVCLWLGANVMLEYScdevylffptsc
Flexible Loop (DISEMBL)
masasaetasssseiataaasptterrgIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKeggealtadfevsEGIFsrariedtdSVCLWLGANVMLEYSCDEVYLFFPTSC
Low Complexity Region (SEG)
MasasaetasssseiataaasptteRRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC
Disordered region (IsUnstruct)
******************************AAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFP***
Disordered Region (DISOPRED)
********************************QFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMK************PDIEKCLDIVA*************ADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC
Disordered Region (DISEMBL)
*************************RRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC
Disordered Region (DISPRO)
****************************IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASASAETASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
P57741	195	Probable prefoldin subuni	yes	no	0.788	0.610	0.840	6e-54
P61759	196	Prefoldin subunit 3 OS=Mu	yes	no	0.847	0.653	0.403	8e-23
Q5RCG9	197	Prefoldin subunit 3 OS=Po	yes	no	0.887	0.680	0.384	2e-22
P61758	197	Prefoldin subunit 3 OS=Ho	yes	no	0.887	0.680	0.377	5e-22
Q2TBX2	197	Prefoldin subunit 3 OS=Bo	yes	no	0.827	0.634	0.412	3e-21
O18054	185	Probable prefoldin subuni	yes	no	0.761	0.621	0.373	3e-20
Q54LS2	195	Probable prefoldin subuni	yes	no	0.735	0.569	0.382	5e-16
Q9VGP6	185	Probable prefoldin subuni	yes	no	0.741	0.605	0.379	4e-15
Q10143	169	Probable prefoldin subuni	yes	no	0.721	0.644	0.384	7e-15
P48363	199	Prefoldin subunit 3 OS=Sa	yes	no	0.761	0.577	0.328	1e-12

>sp|P57741|PFD3_ARATH Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=2 SV=1

 Score =  209 bits (531), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 100/119 (84%), Positives = 111/119 (93%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIPAA+F++DV+T+LSQ  LD NSALAF QERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 14  TERRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPD 73

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
           IEKCL++VATL+AKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+E
Sbjct: 74  IEKCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEE 132

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|P61759|PFD3_MOUSE Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2

 Score =  105 bits (263), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 82/129 (63%), Gaps = 1/129 (0%)

Query: 15  IATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQ 73
           + TAA +      GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  +
Sbjct: 10  LETAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQK 69

Query: 74  QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
           +R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A +  TD VCLWLGAN
Sbjct: 70  KRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGAN 129

Query: 134 VMLEYSCDE 142
           VMLEY  DE
Sbjct: 130 VMLEYDIDE 138

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Mus musculus (taxid: 10090)

>sp|Q5RCG9|PFD3_PONAB Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 9/143 (6%)

Query: 4   ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
           A+ + +    E+AT        RR   GIP A FVEDV +F+ Q   +  ++ L  L E+
Sbjct: 2   AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56

Query: 60  LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
            Q+YK +E+ L  ++R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A 
Sbjct: 57  YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116

Query: 120 IEDTDSVCLWLGANVMLEYSCDE 142
           +  TD VCLWLGANVMLEY  DE
Sbjct: 117 VPPTDKVCLWLGANVMLEYDIDE 139

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Pongo abelii (taxid: 9601)

>sp|P61758|PFD3_HUMAN Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3

 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 87/143 (60%), Gaps = 9/143 (6%)

Query: 4   ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
           A+ + +    E+AT        RR   GIP A FVEDV +F+ Q   +  ++ L  L E+
Sbjct: 2   AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56

Query: 60  LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
            Q+YK +E+ L  ++R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A 
Sbjct: 57  YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116

Query: 120 IEDTDSVCLWLGANVMLEYSCDE 142
           +  TD +CLWLGANVMLEY  DE
Sbjct: 117 VPPTDKMCLWLGANVMLEYDIDE 139

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Homo sapiens (taxid: 9606)

>sp|Q2TBX2|PFD3_BOVIN Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 1/126 (0%)

Query: 18  AAASPTTERRGIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRD 76
           AA +      GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R 
Sbjct: 14  AAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYKFMELNLAQKKRR 73

Query: 77  LQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVML 136
           L+ +IP+I++ L+I+   Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVML
Sbjct: 74  LKGQIPEIKQTLEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVML 133

Query: 137 EYSCDE 142
           EY  DE
Sbjct: 134 EYDIDE 139

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Bos taurus (taxid: 9913)

>sp|O18054|PFD3_CAEEL Probable prefoldin subunit 3 OS=Caenorhabditis elegans GN=pfd-3 PE=3 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 74/115 (64%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           RGIP ++ +EDV+++L++  L +  A   L+E+  +YK VE  +LAQ+  +  KIP+ E 
Sbjct: 11  RGIPKSELIEDVESWLTKEKLSIEEAEVVLREKYGKYKYVESSMLAQKVRMSEKIPEFEN 70

Query: 87  CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCD 141
            L I+ TL AK+   E+    F +S+ ++++A ++  + V +WLGANVM+EY  +
Sbjct: 71  SLSIIDTLIAKRAADESFETTFLLSDDVYTKATVQKPEKVSIWLGANVMVEYDLE 125

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54LS2|PFD3_DICDI Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 4/115 (3%)

Query: 28  GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87
            IP   F+ +V+ F+   D DV +    LQE  Q+YK  E KL      L  +   +++ 
Sbjct: 23  NIPMVTFISNVEEFVK--DKDVENVFKQLQEAYQKYKFFESKLSNNISMLTQRSKQLQES 80

Query: 88  LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
           LDIV  ++ K    E+ +  +E+SEG++S A++ +  S+ LWLGANVMLEYS +E
Sbjct: 81  LDIVDHVENK--SNESFSVQYELSEGVYSSAQVNEPKSIYLWLGANVMLEYSFEE 133

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VGP6|PFD3_DROME Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719 PE=3 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 4/116 (3%)

Query: 28  GIPAAQFVEDVQTFLSQL-DLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           GIP A F+E++ TF+SQ  + +    L  L E+  +Y+ +   L A++R L+++IPD+E+
Sbjct: 13  GIPEAVFLEEIDTFMSQPENENCEKVLQRLDEQHGKYRFMACNLEARRRKLKSQIPDLER 72

Query: 87  CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
            L++V  L+ + E  E     F +S+ +F +  +  T +V LWLGA+VMLEY  DE
Sbjct: 73  SLEMVNVLRKEDEERET---QFLLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDE 125

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q10143|PFD3_SCHPO Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.07c PE=3 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 8/117 (6%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLD-VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85
           RGIP AQF E       +L ++     L   QE + +YK +E  ++ +   L  KIPDI 
Sbjct: 7   RGIPPAQFFE-----FKELSMEEAQGHLEKFQEAIAKYKFMETSVVRRVASLDDKIPDIR 61

Query: 86  KCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
           K L  V  L  K+  G++ T  +E+++ + ++A +E  D+V LWLGANVMLEY+ +E
Sbjct: 62  KTLQSVQFL--KERQGDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTVEE 116

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P48363|PFD3_YEAST Prefoldin subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAC10 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 10/125 (8%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           RGIP A F+E+V   +     D        QERL +YK ++   LA  + L+ +IPD+E 
Sbjct: 13  RGIPQAPFIENVNEIIKDPS-DFELCFNKFQERLSKYKFMQESKLATIKQLKTRIPDLEN 71

Query: 87  CLDIVATLQAKKEGG----EALTADFEVSEGIFSRARIEDTD-----SVCLWLGANVMLE 137
            L I  +L+   + G    E +   +++++ ++++A+++  +      V LWLGA+VMLE
Sbjct: 72  TLKICQSLRNHSDEGDESDEPILLHYQLNDTLYTKAQVDIPEDRADLKVGLWLGADVMLE 131

Query: 138 YSCDE 142
           Y  DE
Sbjct: 132 YPIDE 136

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
115489090	196	Os12g0562900 [Oryza sativa Japonica Grou	0.794	0.612	0.883	7e-56
414878111	188	TPA: prefoldin subunit 3 [Zea mays]	0.841	0.675	0.829	9e-56
195635051	188	prefoldin subunit 3 [Zea mays]	0.827	0.664	0.838	9e-56
226504476	188	LOC100282989 [Zea mays] gi|195626666|gb|	0.827	0.664	0.838	1e-55
255556430	185	prefoldin subunit, putative [Ricinus com	0.821	0.670	0.854	3e-55
225432002	188	PREDICTED: probable prefoldin subunit 3	0.847	0.680	0.813	5e-55
242083808	191	hypothetical protein SORBIDRAFT_08g01827	0.781	0.617	0.881	2e-54
388508614	192	unknown [Lotus japonicus]	0.788	0.619	0.857	3e-54
224101531	196	predicted protein [Populus trichocarpa]	0.887	0.683	0.813	5e-54
357448881	192	Prefoldin subunit [Medicago truncatula]	0.794	0.625	0.858	5e-54

>gi|115489090|ref|NP_001067032.1| Os12g0562900 [Oryza sativa Japonica Group] gi|77556159|gb|ABA98955.1| prefoldin subunit 3, putative, expressed [Oryza sativa Japonica Group] gi|113649539|dbj|BAF30051.1| Os12g0562900 [Oryza sativa Japonica Group] gi|215701045|dbj|BAG92469.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765550|dbj|BAG87247.1| unnamed protein product [Oryza sativa Japonica Group] gi|222617303|gb|EEE53435.1| hypothetical protein OsJ_36518 [Oryza sativa Japonica Group]

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 106/120 (88%), Positives = 112/120 (93%)

Query: 23  TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIP 82
            TERRGIPAA FVEDV+T+L Q  LDVNS LAFLQERLQQYK+VEMKLLAQQRDLQAKIP
Sbjct: 20  VTERRGIPAASFVEDVETYLRQAGLDVNSGLAFLQERLQQYKIVEMKLLAQQRDLQAKIP 79

Query: 83  DIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
           DIEKCLDIVATLQAKK  GEALTADFE+SEGI+SRA+IEDTDSVCLWLGANVMLEYSCDE
Sbjct: 80  DIEKCLDIVATLQAKKALGEALTADFELSEGIYSRAKIEDTDSVCLWLGANVMLEYSCDE 139

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414878111|tpg|DAA55242.1| TPA: prefoldin subunit 3 [Zea mays]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 107/129 (82%), Positives = 117/129 (90%), Gaps = 2/129 (1%)

Query: 16  ATAAASP--TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQ 73
           A AA++P    ERRGIPAA FVEDV+ +L Q+ LDVNSALAFLQERLQQYK+VEMKLLAQ
Sbjct: 3   AAAASTPQGVAERRGIPAAAFVEDVEAYLRQVGLDVNSALAFLQERLQQYKIVEMKLLAQ 62

Query: 74  QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
           QRDLQAKIPDIEKCLDIV TLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGAN
Sbjct: 63  QRDLQAKIPDIEKCLDIVTTLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGAN 122

Query: 134 VMLEYSCDE 142
           VMLEYSCDE
Sbjct: 123 VMLEYSCDE 131

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195635051|gb|ACG36994.1| prefoldin subunit 3 [Zea mays]

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 109/130 (83%), Positives = 118/130 (90%), Gaps = 5/130 (3%)

Query: 18  AAASPTT-----ERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLA 72
           AAAS +T     ERRGIPAA FVEDV+ +L Q+ LDVNSALAFLQERLQQYK+VEMKLLA
Sbjct: 2   AAASVSTPQGVAERRGIPAAAFVEDVEAYLRQVGLDVNSALAFLQERLQQYKIVEMKLLA 61

Query: 73  QQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132
           QQRDLQAKIPDIEKCLDIVATLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGA
Sbjct: 62  QQRDLQAKIPDIEKCLDIVATLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGA 121

Query: 133 NVMLEYSCDE 142
           NVMLEYSCDE
Sbjct: 122 NVMLEYSCDE 131

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226504476|ref|NP_001149365.1| LOC100282989 [Zea mays] gi|195626666|gb|ACG35163.1| prefoldin subunit 3 [Zea mays]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/130 (83%), Positives = 118/130 (90%), Gaps = 5/130 (3%)

Query: 18  AAASPTT-----ERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLA 72
           AAAS +T     ERRGIPAA FVEDV+ +L Q+ LDVNSALAFLQERLQQYK+VEMKLLA
Sbjct: 2   AAASVSTPQGVAERRGIPAAAFVEDVEAYLRQVGLDVNSALAFLQERLQQYKIVEMKLLA 61

Query: 73  QQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132
           QQRDLQAKIPDIEKCLDIVATLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGA
Sbjct: 62  QQRDLQAKIPDIEKCLDIVATLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGA 121

Query: 133 NVMLEYSCDE 142
           NVMLEYSCDE
Sbjct: 122 NVMLEYSCDE 131

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556430|ref|XP_002519249.1| prefoldin subunit, putative [Ricinus communis] gi|223541564|gb|EEF43113.1| prefoldin subunit, putative [Ricinus communis]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/124 (85%), Positives = 113/124 (91%)

Query: 19  AASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQ 78
           A+   TERRGIP AQFVEDV+T+LSQ  LDVNS L+FLQERLQQYKLVEMKLLAQQRDLQ
Sbjct: 2   ASVSATERRGIPGAQFVEDVETYLSQSGLDVNSGLSFLQERLQQYKLVEMKLLAQQRDLQ 61

Query: 79  AKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEY 138
           AKIPDIEKCLD+VATLQAKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEY
Sbjct: 62  AKIPDIEKCLDVVATLQAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEY 121

Query: 139 SCDE 142
           SC+E
Sbjct: 122 SCEE 125

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432002|ref|XP_002279358.1| PREDICTED: probable prefoldin subunit 3 [Vitis vinifera]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 105/129 (81%), Positives = 117/129 (90%), Gaps = 1/129 (0%)

Query: 15  IATAAASP-TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQ 73
           +A++++SP  TERRGIP A FV DVQT+L++  LD NSALAFLQERLQQYKLVEMKLLAQ
Sbjct: 1   MASSSSSPAVTERRGIPGASFVHDVQTYLTESGLDCNSALAFLQERLQQYKLVEMKLLAQ 60

Query: 74  QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
           QRDLQAKIPDIEKCLD+VATL+AKK  GE L ADFEVSEGI+SRARIEDTDSVCLWLGAN
Sbjct: 61  QRDLQAKIPDIEKCLDVVATLEAKKGTGEPLIADFEVSEGIYSRARIEDTDSVCLWLGAN 120

Query: 134 VMLEYSCDE 142
           VMLEYSC+E
Sbjct: 121 VMLEYSCEE 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242083808|ref|XP_002442329.1| hypothetical protein SORBIDRAFT_08g018270 [Sorghum bicolor] gi|241943022|gb|EES16167.1| hypothetical protein SORBIDRAFT_08g018270 [Sorghum bicolor]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 111/118 (94%)

Query: 25  ERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDI 84
           ERRGIPAA FVEDV+ +L Q  LDVNSALAFLQERLQQYK+VEMKLLAQQRDLQAKIPDI
Sbjct: 17  ERRGIPAAAFVEDVEAYLRQAGLDVNSALAFLQERLQQYKIVEMKLLAQQRDLQAKIPDI 76

Query: 85  EKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
           EKCLDIVATLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGANVMLEYSCDE
Sbjct: 77  EKCLDIVATLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGANVMLEYSCDE 134

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508614|gb|AFK42373.1| unknown [Lotus japonicus]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/119 (85%), Positives = 110/119 (92%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIPAAQFVEDVQT+L+QL LDVNS LAFLQERLQQY+LVEMKLLAQQRDLQAKIPD
Sbjct: 14  TERRGIPAAQFVEDVQTYLTQLGLDVNSTLAFLQERLQQYRLVEMKLLAQQRDLQAKIPD 73

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
           IEKCLD+V TLQAKK  GE L  DFEVSEGI+SRARI++TDSVCLWLGANVMLEYS +E
Sbjct: 74  IEKCLDVVGTLQAKKGTGEELITDFEVSEGIYSRARIDETDSVCLWLGANVMLEYSLEE 132

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101531|ref|XP_002312319.1| predicted protein [Populus trichocarpa] gi|222852139|gb|EEE89686.1| predicted protein [Populus trichocarpa]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/134 (81%), Positives = 118/134 (88%)

Query: 9   ASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEM 68
           ASSSS     A   TTERRGIP AQFVEDV+T+L+Q  LDVNSAL+FLQERLQQYKLVEM
Sbjct: 2   ASSSSTAVATATETTTERRGIPGAQFVEDVETYLNQSGLDVNSALSFLQERLQQYKLVEM 61

Query: 69  KLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128
           KLLAQQRDLQAKIPDIEKCLD+VATLQAKK  GE L ADFEVSEGI+S+ARIED +SVCL
Sbjct: 62  KLLAQQRDLQAKIPDIEKCLDVVATLQAKKGTGEPLIADFEVSEGIYSQARIEDAESVCL 121

Query: 129 WLGANVMLEYSCDE 142
           WLGANVMLEYSC+E
Sbjct: 122 WLGANVMLEYSCEE 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448881|ref|XP_003594716.1| Prefoldin subunit [Medicago truncatula] gi|355483764|gb|AES64967.1| Prefoldin subunit [Medicago truncatula] gi|388522731|gb|AFK49427.1| unknown [Medicago truncatula]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/120 (85%), Positives = 111/120 (92%)

Query: 23  TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIP 82
            TERRGIP AQFVEDVQT+L+QL LDVNSALAFLQERLQQYK+VEMKLLAQQR+LQAKIP
Sbjct: 11  VTERRGIPGAQFVEDVQTYLTQLGLDVNSALAFLQERLQQYKVVEMKLLAQQRELQAKIP 70

Query: 83  DIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
           DIEKCLD+VATLQAKK  GE L ADFEVSEGI+SRA IE+TDSVCLWLGANVMLEYS +E
Sbjct: 71  DIEKCLDVVATLQAKKGTGEELIADFEVSEGIYSRASIEETDSVCLWLGANVMLEYSLEE 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2157819	195	PFD3 "prefoldin 3" [Arabidopsi	0.774	0.6	0.837	1.2e-47
UNIPROTKB|F1RZQ7	197	VBP1 "Uncharacterized protein"	0.761	0.583	0.431	1.9e-21
UNIPROTKB|K7GNY9	197	VBP1 "Uncharacterized protein"	0.761	0.583	0.431	1.9e-21
UNIPROTKB|F6XQ49	197	VBP1 "Uncharacterized protein"	0.761	0.583	0.431	3e-21
MGI|MGI:1333804	196	Vbp1 "von Hippel-Lindau bindin	0.761	0.586	0.422	3e-21
UNIPROTKB|G5E5K1	197	VBP1 "Prefoldin subunit 3" [Bo	0.761	0.583	0.431	3.9e-21
UNIPROTKB|P61758	197	VBP1 "Prefoldin subunit 3" [Ho	0.761	0.583	0.413	6.3e-21
UNIPROTKB|E1BXR1	200	VBP1 "Uncharacterized protein"	0.761	0.575	0.422	1e-20
UNIPROTKB|Q2TBX2	197	VBP1 "Prefoldin subunit 3" [Bo	0.761	0.583	0.431	1e-20
UNIPROTKB|E2R6K7	201	VBP1 "Uncharacterized protein"	0.761	0.572	0.427	2.7e-20

TAIR|locus:2157819 PFD3 "prefoldin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 98/117 (83%), Positives = 109/117 (93%)

Query:    26 RRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85
             RRGIPAA+F++DV+T+LSQ  LD NSALAF QERLQQYK+VEMKLLAQQRDLQAKIPDIE
Sbjct:    16 RRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPDIE 75

Query:    86 KCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
             KCL++VATL+AKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+E
Sbjct:    76 KCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEE 132

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0016272 "prefoldin complex" evidence=IEA;ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|F1RZQ7 VBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 50/116 (43%), Positives = 77/116 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DE
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDE 139

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|K7GNY9 VBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 50/116 (43%), Positives = 77/116 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DE
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDE 139

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F6XQ49 VBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/116 (43%), Positives = 77/116 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DE
Sbjct:    84 TLEILKYMQKKKESTGSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDE 139

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

MGI|MGI:1333804 Vbp1 "von Hippel-Lindau binding protein 1" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 49/116 (42%), Positives = 77/116 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    23 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 82

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
              L+I+  +Q KKE   ++   F +++ ++ +A +  TD VCLWLGANVMLEY  DE
Sbjct:    83 TLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDE 138

GO:0005634 "nucleus" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|G5E5K1 VBP1 "Prefoldin subunit 3" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 50/116 (43%), Positives = 76/116 (65%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DE
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDE 139

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|P61758 VBP1 "Prefoldin subunit 3" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 48/116 (41%), Positives = 77/116 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
              L+I+  +Q KKE   ++   F +++ ++ +A +  TD +CLWLGANVMLEY  DE
Sbjct:    84 TLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKMCLWLGANVMLEYDIDE 139

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BXR1 VBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 49/116 (42%), Positives = 75/116 (64%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    27 GIPEAVFVEDVDSFMKQPGNETADVVLKKLDEQYQKYKFLELNLAQKKRRLKGQIPEIKQ 86

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
              L+I+  +Q KKE    +   F +++ ++ +A +  TD VCLWLGANVMLEY  DE
Sbjct:    87 TLEILKHMQKKKESTNPMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDE 142

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|Q2TBX2 VBP1 "Prefoldin subunit 3" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 50/116 (43%), Positives = 75/116 (64%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
              L+I+   Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DE
Sbjct:    84 TLEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDE 139

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005634 "nucleus" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|E2R6K7 VBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 50/117 (42%), Positives = 77/117 (65%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKK-EGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
              L+I+  +Q KK E   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DE
Sbjct:    84 TLEILKYMQKKKKESTGSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDE 140

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P57741	PFD3_ARATH	No assigned EC number	0.8403	0.7880	0.6102	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4352529	prefoldin, putative, expressed (196 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
	4333507	prefoldin subunit, putative, expressed (126 aa)				•	•	•	•		0.935
	4348957	prefoldin, putative, expressed (150 aa)				•	•	•	•		0.921
	OsJ_06059	prefoldin subunit, putative, expressed (134 aa)				•	•	•	•		0.908
	OsI_07131	prefoldin subunit, putative, expressed (129 aa)				•	•	•	•		0.770
	4352232	prefoldin subunit, putative, expressed (147 aa)				•	•	•	•		0.745
	4350745	prefoldin subunit, putative, expressed (147 aa)				•	•	•	•		0.734
	B1012D10.2	translation machinery-associated protein 20, putative, expressed (181 aa)				•					0.664
	4331140	tubulin-specific chaperone A, putative, expressed (112 aa)				•	•				0.610
	4336215	mitotic spindle checkpoint protein MAD2, putative, expressed (207 aa)				•	•				0.598
	4329832	Brix domain containing protein, putative, expressed (331 aa)				•					0.585

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
pfam02996	120	pfam02996, Prefoldin, Prefoldin subunit	2e-16
cd00584	129	cd00584, Prefoldin_alpha, Prefoldin alpha subunit;	1e-12
cd00890	129	cd00890, Prefoldin, Prefoldin is a hexameric molec	2e-09
PRK03947	140	PRK03947, PRK03947, prefoldin subunit alpha; Revie	2e-04

>gnl|CDD|202504 pfam02996, Prefoldin, Prefoldin subunit

 Score = 70.0 bits (172), Expect = 2e-16
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 63  YKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIED 122
            K     L A+   L+  I ++EK L+ + TL+ + EG E L     +  G+F +  + D
Sbjct: 1   LKQEIESLQAELARLREAIEELEKTLETLKTLKKEDEGKEVL---VPLGAGLFVKGEVID 57

Query: 123 TDSVCLWLGANVMLEYSCDE 142
           TD V + LGA   +E S +E
Sbjct: 58  TDKVLVDLGAGYYVEKSLEE 77

This family comprises of several prefoldin subunits. The biogenesis of the cytoskeletal proteins actin and tubulin involves interaction of nascent chains of each of the two proteins with the oligomeric protein prefoldin (PFD) and their subsequent transfer to the cytosolic chaperonin CCT (chaperonin containing TCP-1). Electron microscopy shows that eukaryotic PFD, which has a similar structure to its archaeal counterpart, interacts with unfolded actin along the tips of its projecting arms. In its PFD-bound state, actin seems to acquire a conformation similar to that adopted when it is bound to CCT. Length = 120

>gnl|CDD|238327 cd00584, Prefoldin_alpha, Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 60.7 bits (148), Expect = 1e-12
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 53  LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSE 112
           L  L  +LQ  +    +L  +   L   I + E+  + + TL+   EG E L     +  
Sbjct: 1   LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETL---VPLGA 57

Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
           G+F +A+++DTD V + LG    +E   +E
Sbjct: 58  GVFVKAKVKDTDKVLVDLGTGYYVEKDLEE 87

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|238453 cd00890, Prefoldin, Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 56  LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIF 115
           L  +LQQ +     L  Q + L+A++ + EK  + + TL+  +E  E L     +  G+F
Sbjct: 4   LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVP---LGAGLF 60

Query: 116 SRARIEDTDSVCLWLGANVMLEYSCDEV 143
            +A ++D D V + LG  V +E S +E 
Sbjct: 61  VKAEVKDDDKVLVDLGTGVYVEKSLEEA 88

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 56  LQERLQQYKLVEMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGI 114
           L  +LQ  +  +++ L QQ + LQA I +++   + +  L++K EG E L     +  G 
Sbjct: 11  LAAQLQALQ-AQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETL---VPIGAGS 66

Query: 115 FSRARIEDTDSVCLWLGANVMLEYSCDE 142
           F +A+++D D V + LGA    E   DE
Sbjct: 67  FVKAKVKDKDKVIVSLGAGYSAEKDLDE 94

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG3313	187	consensus Molecular chaperone Prefoldin, subunit 3	100.0
PRK03947	140	prefoldin subunit alpha; Reviewed	99.88
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	99.85
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	99.77
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.64
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	99.61
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	99.45
PRK14011	144	prefoldin subunit alpha; Provisional	99.29
PRK01203	130	prefoldin subunit alpha; Provisional	99.19
KOG3048	153	consensus Molecular chaperone Prefoldin, subunit 5	97.88
KOG3047	157	consensus Predicted transcriptional regulator UXT	96.93
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	95.74
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	93.3
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	92.01
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	83.49

>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.1e-52  Score=328.51  Aligned_cols=130  Identities=48%  Similarity=0.783  Sum_probs=123.0

Q ss_pred             CCCCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCC
Q 031875           22 PTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGG  101 (151)
Q Consensus        22 ~~~~~rgIP~A~FiedV~~~~~~~~~~~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~  101 (151)
                      ..+++||||+|+|||||++|+++|+......++.+||+|+||||||.+|.+++++|+.|||||+++|++|+.|+++++.+
T Consensus         8 ~~k~~rGIPeA~fiedV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~   87 (187)
T KOG3313|consen    8 LSKNARGIPEAKFIEDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEG   87 (187)
T ss_pred             hhhccCCCChhHHHHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccC
Confidence            36899999999999999999999983333349999999999999999999999999999999999999999999999888


Q ss_pred             CceeEEEEccccceeeeEeCCCCeEEEecccceeeeecHHHHhhhcccCC
Q 031875          102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTSC  151 (151)
Q Consensus       102 e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY~ldEA~elL~kn~  151 (151)
                      ++++++|+|+||||+||.|||+++|||||||||||||++|||++||++|+
T Consensus        88 ~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl  137 (187)
T KOG3313|consen   88 ESFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNL  137 (187)
T ss_pred             cceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999874

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=99.88  E-value=3.2e-22  Score=151.84  Aligned_cols=100  Identities=25%  Similarity=0.312  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEE
Q 031875           49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL  128 (151)
Q Consensus        49 ~e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~L  128 (151)
                      .+.-++.++++|++|+.+...|.+++..|...+|+++.++++|+.|.++.   ++.+++|+|++++|++|+|+++++|++
T Consensus         4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~---~~~e~lvplg~~~yv~~~v~~~~kV~v   80 (140)
T PRK03947          4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKG---EGKETLVPIGAGSFVKAKVKDKDKVIV   80 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence            46678999999999999999999999999999999999999999997653   568999999999999999999999999


Q ss_pred             ecccceeeeecHHHHhhhcccCC
Q 031875          129 WLGANVMLEYSCDEVYLFFPTSC  151 (151)
Q Consensus       129 WLGAnVMlEY~ldEA~elL~kn~  151 (151)
                      |||+||||||+++||+++|++|+
T Consensus        81 ~lG~g~~vE~~~~eA~~~l~~~~  103 (140)
T PRK03947         81 SLGAGYSAEKDLDEAIEILDKRK  103 (140)
T ss_pred             EcCCCEEEEecHHHHHHHHHHHH
Confidence            99999999999999999998763

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=99.85  E-value=3.7e-21  Score=143.33  Aligned_cols=94  Identities=26%  Similarity=0.352  Sum_probs=88.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccc
Q 031875           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (151)
Q Consensus        54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAn  133 (151)
                      +.+..+|++|+.....|.+++..|...+++++.++++|+.|..+    +..++.+||++++|++|+|+++++|++|||+|
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~----~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g   77 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA----EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSG   77 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCC
Confidence            57889999999999999999999999999999999999999644    46899999999999999999999999999999


Q ss_pred             eeeeecHHHHhhhcccCC
Q 031875          134 VMLEYSCDEVYLFFPTSC  151 (151)
Q Consensus       134 VMlEY~ldEA~elL~kn~  151 (151)
                      ||||++++||+++|++|+
T Consensus        78 ~~vE~~~~eA~~~l~~~~   95 (126)
T TIGR00293        78 YYVEKDAEEAIEFLKKRI   95 (126)
T ss_pred             EEEEecHHHHHHHHHHHH
Confidence            999999999999998763

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.77  E-value=1.9e-18  Score=129.17  Aligned_cols=94  Identities=23%  Similarity=0.327  Sum_probs=89.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccc
Q 031875           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (151)
Q Consensus        54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAn  133 (151)
                      +.++.++++|+..-..++++...|...+++...++++|+.|...   +.+.++.+||+.++|++|+|+++++|++|||+|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g   78 (129)
T cd00584           2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKA---DEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTG   78 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCC
Confidence            57889999999999999999999999999999999999999764   357999999999999999999999999999999


Q ss_pred             eeeeecHHHHhhhcccC
Q 031875          134 VMLEYSCDEVYLFFPTS  150 (151)
Q Consensus       134 VMlEY~ldEA~elL~kn  150 (151)
                      |++|++++||+++|++|
T Consensus        79 ~~vE~~~~eA~~~l~~r   95 (129)
T cd00584          79 YYVEKDLEEAIEFLDKK   95 (129)
T ss_pred             EEEEecHHHHHHHHHHH
Confidence            99999999999999876

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.64  E-value=1.2e-15  Score=112.63  Aligned_cols=94  Identities=28%  Similarity=0.364  Sum_probs=87.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccc
Q 031875           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (151)
Q Consensus        54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAn  133 (151)
                      +.+...+++|+..-..+.+++..+...+++++.+++.|+.|....   ++.+...+++.++|.+|+|+++++|++|+|+|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~---~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~   78 (129)
T cd00890           2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAE---EEKELLVPLGAGLFVKAEVKDDDKVLVDLGTG   78 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCCeEEEecCCceEEEEEECCCCEEEEEecCC
Confidence            567889999999999999999999999999999999999997554   56777889999999999999999999999999


Q ss_pred             eeeeecHHHHhhhcccC
Q 031875          134 VMLEYSCDEVYLFFPTS  150 (151)
Q Consensus       134 VMlEY~ldEA~elL~kn  150 (151)
                      ++||++++||+++|.++
T Consensus        79 ~~ve~~~~eA~~~l~~r   95 (129)
T cd00890          79 VYVEKSLEEAIEFLKKR   95 (129)
T ss_pred             EEEEecHHHHHHHHHHH
Confidence            99999999999999875

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=99.61  E-value=8.3e-16  Score=112.75  Aligned_cols=82  Identities=24%  Similarity=0.330  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccceeeeecHHHHhh
Q 031875           66 VEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYL  145 (151)
Q Consensus        66 mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY~ldEA~e  145 (151)
                      .-.++++++..|...+.++..+++.|+.|..   .+.+.++.+||+.++|++|+|+++++|++|||+|+++|++++||++
T Consensus         4 ~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~---~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~   80 (120)
T PF02996_consen    4 ELENLQQQIEQLEEQIEEYEEAKETLEELKK---EKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIE   80 (120)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHH
Confidence            3467889999999999999999999999976   2368999999999999999999999999999999999999999999


Q ss_pred             hcccC
Q 031875          146 FFPTS  150 (151)
Q Consensus       146 lL~kn  150 (151)
                      +|++|
T Consensus        81 ~l~~r   85 (120)
T PF02996_consen   81 FLKKR   85 (120)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99876

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=6.5e-13  Score=103.54  Aligned_cols=99  Identities=25%  Similarity=0.348  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEe
Q 031875           50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLW  129 (151)
Q Consensus        50 e~~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LW  129 (151)
                      ..-++.+.+.|+-|+..-+.|+++...|...+-+++.++++|+.|+...   +.-++.+|++.++|++|+|...|+|.+-
T Consensus         5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~---~g~E~LVpvGag~fv~~kv~~~~kviV~   81 (145)
T COG1730           5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAG---EGKEVLVPVGAGLFVKAKVKDMDKVIVS   81 (145)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEEEEcCCCceEEEEeccCceEEEE
Confidence            3457788999999999999999999999999999999999999998764   2459999999999999999999999999


Q ss_pred             cccceeeeecHHHHhhhcccCC
Q 031875          130 LGANVMLEYSCDEVYLFFPTSC  151 (151)
Q Consensus       130 LGAnVMlEY~ldEA~elL~kn~  151 (151)
                      ||+||-+|-+++||+++|++|+
T Consensus        82 iGsg~~ae~~~~eAie~l~k~~  103 (145)
T COG1730          82 IGSGYYAEKSADEAIEFLKKRI  103 (145)
T ss_pred             cCCceeeeecHHHHHHHHHHHH
Confidence            9999999999999999999874

>PRK14011 prefoldin subunit alpha; Provisional

Probab=99.29  E-value=2.6e-11  Score=94.34  Aligned_cols=93  Identities=23%  Similarity=0.263  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecc
Q 031875           52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG  131 (151)
Q Consensus        52 ~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLG  131 (151)
                      -++++...++.|+..-..|.++...|..-+-++..++++++.+.      .+-++.+||+.++|++|+|.++|+|.+-+|
T Consensus         4 elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~------~~~eiLVPLg~s~yV~g~i~d~dkVlVdIG   77 (144)
T PRK14011          4 ELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK------TSEEILIPLGPGAFLKAKIVDPDKAILGVG   77 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCCeEEEEcCCCcEEeEEecCCCeEEEEcc
Confidence            46677778899999999999999999999999999999998653      458999999999999999999999999999


Q ss_pred             cceeeeecHHHHhhhcccC
Q 031875          132 ANVMLEYSCDEVYLFFPTS  150 (151)
Q Consensus       132 AnVMlEY~ldEA~elL~kn  150 (151)
                      +|+.||.+++||+++|+++
T Consensus        78 tGy~VEk~~~eA~~~~~~r   96 (144)
T PRK14011         78 SDIYLEKDVSEVIEDFKKS   96 (144)
T ss_pred             CCeEEEecHHHHHHHHHHH
Confidence            9999999999999999865

>PRK01203 prefoldin subunit alpha; Provisional

Probab=99.19  E-value=1.1e-10  Score=89.62  Aligned_cols=92  Identities=10%  Similarity=0.187  Sum_probs=81.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccce
Q 031875           55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANV  134 (151)
Q Consensus        55 ~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnV  134 (151)
                      .+.+.|+-|+..-+.|.++...|+.-+-++..+++.++.+.    .+++-++.+||+.++|++|+|.++++|.+-+|+|+
T Consensus         4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~----~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy   79 (130)
T PRK01203          4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNE----LDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGV   79 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----cCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCe
Confidence            45567777888888899999999999999999888888853    22458999999999999999999999999999999


Q ss_pred             eeeecHHHHhhhcccC
Q 031875          135 MLEYSCDEVYLFFPTS  150 (151)
Q Consensus       135 MlEY~ldEA~elL~kn  150 (151)
                      .||.+.++++++|++|
T Consensus        80 ~VEK~~e~kie~L~~~   95 (130)
T PRK01203         80 YIAEERERTIERLKEN   95 (130)
T ss_pred             EEEecHHHHHHHHHHH
Confidence            9999999999999876

>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=7.8e-05  Score=58.58  Aligned_cols=71  Identities=14%  Similarity=0.258  Sum_probs=57.0

Q ss_pred             HHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccceeeeecHHHHhhhcccC
Q 031875           74 QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPTS  150 (151)
Q Consensus        74 ~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY~ldEA~elL~kn  150 (151)
                      +.+.+.|..++..+|.   .++..   .+.-+..+||+..+|+.+++...+++.+-+|-|..||.+.++|+++..++
T Consensus        39 L~~aq~k~~~~~~aln---~~~~~---~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK~~e~akdyfkRK  109 (153)
T KOG3048|consen   39 LKGAQTKYEESIAALN---DVQAA---NEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEKDAEDAKDYFKRK  109 (153)
T ss_pred             HHHHHHHHHHHHHHHh---hcccC---CCCCeEEEecccceeccceeccccceeEeccCceEEeechHHHHHHHHHH
Confidence            4455555555544444   45433   47789999999999999999999999999999999999999999987654

>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]

Probab=96.93  E-value=0.0032  Score=49.18  Aligned_cols=48  Identities=17%  Similarity=0.281  Sum_probs=44.7

Q ss_pred             CceeEEEEccccceeeeEeCCCCeEEEecccceeeeecHHHHhhhccc
Q 031875          102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEVYLFFPT  149 (151)
Q Consensus       102 e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY~ldEA~elL~k  149 (151)
                      .+++....|+.++|..-.||.+++|++-||-++.||..+.||+++..+
T Consensus        65 kel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf~DR  112 (157)
T KOG3047|consen   65 KELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKFCDR  112 (157)
T ss_pred             hhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHHHHH
Confidence            578889999999999999999999999999999999999999987643

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=95.74  E-value=0.0058  Score=44.43  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=56.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccc
Q 031875           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (151)
Q Consensus        54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAn  133 (151)
                      ..+...|++|+---..+.+++..|...+-+.+.+++-+..|.                          +..+||.-+|. 
T Consensus         2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~--------------------------~d~~vy~~VG~-   54 (105)
T cd00632           2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA--------------------------DDAEVYKLVGN-   54 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchHHHHhhh-
Confidence            356778888888888999999999999999999999888772                          33445555553 


Q ss_pred             eeeeecHHHHhhhcccC
Q 031875          134 VMLEYSCDEVYLFFPTS  150 (151)
Q Consensus       134 VMlEY~ldEA~elL~kn  150 (151)
                      |+|+.+.+||...|+++
T Consensus        55 vfv~~~~~ea~~~Le~~   71 (105)
T cd00632          55 VLVKQEKEEARTELKER   71 (105)
T ss_pred             HHhhccHHHHHHHHHHH
Confidence            99999999999998764

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=93.30  E-value=0.11  Score=38.11  Aligned_cols=72  Identities=18%  Similarity=0.242  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecc
Q 031875           52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG  131 (151)
Q Consensus        52 ~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLG  131 (151)
                      -+..+...|++|+.--..+.+++..|...+-+.+.+++.+..|.                          +..+||--+|
T Consensus         4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~--------------------------~d~~vyk~VG   57 (110)
T TIGR02338         4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP--------------------------DDTPVYKSVG   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHHHhc
Confidence            35667777888888888899999999999999999999887762                          3345666666


Q ss_pred             cceeeeecHHHHhhhcccC
Q 031875          132 ANVMLEYSCDEVYLFFPTS  150 (151)
Q Consensus       132 AnVMlEY~ldEA~elL~kn  150 (151)
                      . |+|+-+.+||+.-|++|
T Consensus        58 ~-vlv~~~~~e~~~~l~~r   75 (110)
T TIGR02338        58 N-LLVKTDKEEAIQELKEK   75 (110)
T ss_pred             h-hhheecHHHHHHHHHHH
Confidence            5 99999999999888765

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=92.01  E-value=0.9  Score=31.89  Aligned_cols=67  Identities=21%  Similarity=0.259  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEeccc
Q 031875           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (151)
Q Consensus        53 l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGA  132 (151)
                      +..|+...++|.    .+.+++..|...+-+++.+++.|..|                          ++..+||.-+| 
T Consensus         4 ~~~~~~l~~~l~----~~~~q~~~l~~~~~~~~~~~~eL~~l--------------------------~~~~~~y~~vG-   52 (106)
T PF01920_consen    4 QNKFQELNQQLQ----QLEQQIQQLERQLRELELTLEELEKL--------------------------DDDRKVYKSVG-   52 (106)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTS--------------------------STT-EEEEEET-
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC--------------------------CCcchhHHHHh-
Confidence            344444444444    44555566777777777777777665                          23446666665 


Q ss_pred             ceeeeecHHHHhhhcccC
Q 031875          133 NVMLEYSCDEVYLFFPTS  150 (151)
Q Consensus       133 nVMlEY~ldEA~elL~kn  150 (151)
                      +++|+.+.+++.+.|+++
T Consensus        53 ~~fv~~~~~~~~~~L~~~   70 (106)
T PF01920_consen   53 KMFVKQDKEEAIEELEER   70 (106)
T ss_dssp             TEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHH
Confidence            688999999999888753

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=83.49  E-value=1.4  Score=34.53  Aligned_cols=71  Identities=13%  Similarity=0.190  Sum_probs=54.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccc
Q 031875           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (151)
Q Consensus        54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAn  133 (151)
                      +.++..|..|+-.-+++.++...|..-.-+.+-.+++++-|.                          |+-++|= +=.+
T Consensus        18 ~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~d--------------------------p~RKCfR-mIgG   70 (140)
T KOG4098|consen   18 QAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLD--------------------------PTRKCFR-MIGG   70 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--------------------------hhhHHHH-Hhcc
Confidence            478889999999999999999999998888888888776652                          3333333 3358


Q ss_pred             eeeeecHHHHhhhcccCC
Q 031875          134 VMLEYSCDEVYLFFPTSC  151 (151)
Q Consensus       134 VMlEY~ldEA~elL~kn~  151 (151)
                      |.|||++.|-.=.|..|+
T Consensus        71 vLVErTVkeVlP~L~~nk   88 (140)
T KOG4098|consen   71 VLVERTVKEVLPILQTNK   88 (140)
T ss_pred             chhhhhHHHHhHHHHhhH
Confidence            999999998887776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	9e-04

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 Length = 133

 Score = 36.5 bits (84), Expect = 9e-04
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 51  SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEV 110
           +ALA +  +L  Y+     +  Q   ++A I ++E     ++ +Q  K+G E L     V
Sbjct: 1   AALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ-GKDGSETLV---PV 56

Query: 111 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142
             G F +A ++DT  V + +GA V ++ + ++
Sbjct: 57  GAGSFIKAELKDTSEVIMSVGAGVAIKKNFED 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	99.92
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	99.88
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	96.39
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	95.94

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=99.92  E-value=3.1e-25  Score=165.84  Aligned_cols=94  Identities=20%  Similarity=0.282  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEeccc
Q 031875           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (151)
Q Consensus        53 l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGA  132 (151)
                      +++|++++++|+++..++.+++..|..+||++++++++|+.|..    .++.+++|||++++|++|+|+++++|++|||+
T Consensus         3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~----~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~   78 (133)
T 1fxk_C            3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG----KDGSETLVPVGAGSFIKAELKDTSEVIMSVGA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCC
Confidence            67899999999999999999999999999999999999999975    25799999999999999999999999999999


Q ss_pred             ceeeeecHHHHhhhcccC
Q 031875          133 NVMLEYSCDEVYLFFPTS  150 (151)
Q Consensus       133 nVMlEY~ldEA~elL~kn  150 (151)
                      ||||||+++||+++|++|
T Consensus        79 g~~vE~~~~eA~~~l~~r   96 (133)
T 1fxk_C           79 GVAIKKNFEDAMESIKSQ   96 (133)
T ss_dssp             TEEEEEEHHHHHHHHHHH
T ss_pred             CEEEEeeHHHHHHHHHHH
Confidence            999999999999999876

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=99.88  E-value=1.4e-23  Score=160.55  Aligned_cols=97  Identities=20%  Similarity=0.240  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCe
Q 031875           49 VNSALAFLQERLQQYKLVEMKLLAQQRDL---QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDS  125 (151)
Q Consensus        49 ~e~~l~~l~e~~~KYk~mE~~l~~~~~~L---~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~  125 (151)
                      .++-+++|.+.+++|+++..++.+++..|   ..++||++++++.|+.|..     ++.+++|+|++++|++|+|+++++
T Consensus         7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~-----~~~~ilvplg~~~yv~g~i~~~~~   81 (151)
T 2zdi_C            7 NNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE-----EKPEILVPIGAGSFLKGVIVDKNN   81 (151)
T ss_dssp             STTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----SSCEEEEECSSSCEEEEECSCTTE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCceEEEEcCCCeEEEEEECCCCE
Confidence            34568999999999999999999999999   9999999999999998842     568999999999999999999999


Q ss_pred             EEEecccceeeeecHHHHhhhcccC
Q 031875          126 VCLWLGANVMLEYSCDEVYLFFPTS  150 (151)
Q Consensus       126 V~LWLGAnVMlEY~ldEA~elL~kn  150 (151)
                      |+||||+||||||+++||+++|++|
T Consensus        82 V~v~lG~g~~vE~~~~eA~~~l~~r  106 (151)
T 2zdi_C           82 AIVSVGSGYAVERSIDEAISFLEKR  106 (151)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHHH
T ss_pred             EEEEeCCCeEEEecHHHHHHHHHHH
Confidence            9999999999999999999999876

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=96.39  E-value=0.0065  Score=43.07  Aligned_cols=72  Identities=17%  Similarity=0.281  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecc
Q 031875           52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG  131 (151)
Q Consensus        52 ~l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLG  131 (151)
                      -+..+...|++++.--..+.+++..+...+-+++.+++-+..|.                          +..+||.-+|
T Consensus         7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~--------------------------~d~~vy~~iG   60 (117)
T 2zqm_A            7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP--------------------------DDAVVYKTVG   60 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--------------------------TTCCEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CCcHhHHHhh
Confidence            35566667777777778888888889888888888888777662                          2235666666


Q ss_pred             cceeeeecHHHHhhhcccC
Q 031875          132 ANVMLEYSCDEVYLFFPTS  150 (151)
Q Consensus       132 AnVMlEY~ldEA~elL~kn  150 (151)
                       +|.|+-+.+||...|+++
T Consensus        61 -~vfv~~~~~ea~~~L~~~   78 (117)
T 2zqm_A           61 -TLIVKTTKDKAVAELKEK   78 (117)
T ss_dssp             -TEEEEECHHHHHHHHHHH
T ss_pred             -HHHhhccHHHHHHHHHHH
Confidence             999999999999998765

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=95.94  E-value=0.034  Score=38.73  Aligned_cols=70  Identities=17%  Similarity=0.236  Sum_probs=51.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccc
Q 031875           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (151)
Q Consensus        54 ~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAn  133 (151)
                      +.....|++++.--..+.+++..+...+-+++.+++-+..|.                          +..+||--+| +
T Consensus         4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~--------------------------~d~~vy~~iG-~   56 (107)
T 1fxk_A            4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA--------------------------DDAEVYKSSG-N   56 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--------------------------TTCCEEEEET-T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CCchHHHHHh-H
Confidence            344455566666666777788888888888888888877761                          2234666666 8


Q ss_pred             eeeeecHHHHhhhcccC
Q 031875          134 VMLEYSCDEVYLFFPTS  150 (151)
Q Consensus       134 VMlEY~ldEA~elL~kn  150 (151)
                      |+|+-+.+||...|.++
T Consensus        57 vfv~~~~~e~~~~L~~~   73 (107)
T 1fxk_A           57 ILIRVAKDELTEELQEK   73 (107)
T ss_dssp             EEEEECHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHH
Confidence            99999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1fxkc_	133	a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Met	8e-11

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 133

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 54.2 bits (130), Expect = 8e-11
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 51  SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEV 110
           +ALA +  +L  Y+     +  Q   ++A I ++E     ++ +Q  K+G E L     V
Sbjct: 1   AALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ-GKDGSETL---VPV 56

Query: 111 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEV 143
             G F +A ++DT  V + +GA V ++ + ++ 
Sbjct: 57  GAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDA 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	99.69
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	89.18

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=4.1e-17  Score=119.49  Aligned_cols=94  Identities=21%  Similarity=0.297  Sum_probs=87.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEeccc
Q 031875           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (151)
Q Consensus        53 l~~l~e~~~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGA  132 (151)
                      |..|..+++.|+..-..|+++...+...++++..+++.|+.|..+    ++-++.+||+.++|++|+|+++++|++|||+
T Consensus         3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~----~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~   78 (133)
T d1fxkc_           3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGK----DGSETLVPVGAGSFIKAELKDTSEVIMSVGA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCeEEEEcCCceEEEEEecCCCceEEEecC
Confidence            678888999999999999999999999999999999999999643    4568999999999999999999999999999


Q ss_pred             ceeeeecHHHHhhhcccC
Q 031875          133 NVMLEYSCDEVYLFFPTS  150 (151)
Q Consensus       133 nVMlEY~ldEA~elL~kn  150 (151)
                      ||++|++++||+++|++|
T Consensus        79 g~~vE~~~~eA~~~l~~r   96 (133)
T d1fxkc_          79 GVAIKKNFEDAMESIKSQ   96 (133)
T ss_dssp             TEEEEEEHHHHHHHHHHH
T ss_pred             CeeeeecHHHHHHHHHHH
Confidence            999999999999999876

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.18  E-value=0.71  Score=30.77  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=45.6

Q ss_pred             HhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhcCCCceeEEEEccccceeeeEeCCCCeEEEecccceeeeecH
Q 031875           61 QQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSC  140 (151)
Q Consensus        61 ~KYk~mE~~l~~~~~~L~~kIPdikktLe~V~~L~~k~~~~e~~et~f~L~d~lyakA~I~~~d~V~LWLGAnVMlEY~l  140 (151)
                      +.++.--..+.+++..|...+-+.+.+|+-++.+                          ||..+||=-+| +|+|+=+.
T Consensus        11 q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l--------------------------~~d~~vyk~vG-~vLv~~~~   63 (107)
T d1fxka_          11 QQLQQQAQAISVQKQTVEMQINETQKALEELSRA--------------------------ADDAEVYKSSG-NILIRVAK   63 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------------------------CTTCCEEEEET-TEEEEECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------------------CcccHHHHHhc-chhhcCcH
Confidence            3333334456688888999999999999887765                          23445655555 79999999


Q ss_pred             HHHhhhcccC
Q 031875          141 DEVYLFFPTS  150 (151)
Q Consensus       141 dEA~elL~kn  150 (151)
                      +|++.-|.++
T Consensus        64 ~e~~~~l~~~   73 (107)
T d1fxka_          64 DELTEELQEK   73 (107)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654