Citrus Sinensis ID: 031877

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MSSSTVTNSQKYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAEDRVGRRLGFCHNGRSGL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHccEEEEEEEccccccccEEEEEccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccEEEcHHHHHcccccHHHHHHHHHHHHHHHcEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEEEcHHHEEEEcccccccccEEEEEcccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcHHHHHccccHHHHHHcHHHHHHHHccEEEccHHHHcccccccEccccccccccc
Coil and Loop (DISEMBL)
mssstvtnsqkyPRYLLQLILSCRKITAQVSDTASAGSSTIVALASsskqdfyshyhsklnpfpkrhrfwdsntvVVVGQKLGSQLREIGIDNVMINLAEElsrpanqrimvlplFDSVRRAGVVVDGLEKLAEdrvgrrlgfchngrsgl
Flexible Loop (DISEMBL)
mssstvtnsqkypRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGleklaedrvgrrlgfchngrsgl
Low Complexity Region (SEG)
MSSSTVTNSQKYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAEDRVGRRLGFCHNGRSGL
Disordered region (IsUnstruct)
***********YPRYLLQLILSCRKITAQVSDT******TIVALA****QDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAEDRVGRRLGFCH******
Disordered Region (DISOPRED)
**********KYPRYLLQLILSCRKITAQVSDTASAGSSTIVALA*SSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAEDRVGRRLGFCHN*****
Disordered Region (DISEMBL)
*********QKYPRYLLQLILSCRKIT************TIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAEDRVGRRLGFCHNGRSGL
Disordered Region (DISPRO)
*********QKYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAEDRVGRRLGFCHN*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSSTVTNSQKYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAEDRVGRRLGFCHNGRSGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
255585499	133	conserved hypothetical protein [Ricinus	0.781	0.887	0.537	3e-30
15224258	133	Ribosomal L18p/L5e family protein [Arabi	0.774	0.879	0.566	1e-29
225433866	123	PREDICTED: uncharacterized protein LOC10	0.761	0.934	0.525	7e-29
297824307	133	hypothetical protein ARALYDRAFT_483437 [	0.761	0.864	0.567	3e-28
449446251	126	PREDICTED: uncharacterized protein LOC10	0.768	0.920	0.571	5e-28
224133130	127	predicted protein [Populus trichocarpa]	0.768	0.913	0.544	5e-27
297743773	169	unnamed protein product [Vitis vinifera]	0.708	0.633	0.518	6e-26
356550370	123	PREDICTED: uncharacterized protein LOC10	0.781	0.959	0.487	5e-25
224093150	127	predicted protein [Populus trichocarpa]	0.768	0.913	0.544	4e-24
357454469	126	hypothetical protein MTR_2g098870 [Medic	0.801	0.960	0.5	6e-21

>gi|255585499|ref|XP_002533441.1| conserved hypothetical protein [Ricinus communis] gi|223526703|gb|EEF28937.1| conserved hypothetical protein [Ricinus communis]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 93/121 (76%), Gaps = 3/121 (2%)

Query: 14  RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSN 73
           ++LL+L+LSCRKITAQV++     +STI+A+ASS++Q+F + Y ++LN FP+ H FWD+ 
Sbjct: 6   QHLLRLVLSCRKITAQVTN---PNTSTIIAMASSTEQEFLAQYRARLNRFPRSHNFWDAK 62

Query: 74  TVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLA 133
               VG+KLG +L+EIG+ ++ I+L EELSRP + R  VLPLFDSV+R GV V G++KL 
Sbjct: 63  MASRVGEKLGFRLKEIGVTSINIDLDEELSRPIHYRKRVLPLFDSVKRVGVDVGGVDKLG 122

Query: 134 E 134
           E
Sbjct: 123 E 123

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224258|ref|NP_181859.1| Ribosomal L18p/L5e family protein [Arabidopsis thaliana] gi|2289004|gb|AAB64333.1| hypothetical protein [Arabidopsis thaliana] gi|18491291|gb|AAL69470.1| F14B2.25/F14B2.25 [Arabidopsis thaliana] gi|20197150|gb|AAM14940.1| hypothetical protein [Arabidopsis thaliana] gi|28207054|gb|AAO37167.1| hypothetical protein [Arabidopsis thaliana] gi|61742679|gb|AAX55160.1| hypothetical protein At2g43310 [Arabidopsis thaliana] gi|330255155|gb|AEC10249.1| Ribosomal L18p/L5e family protein [Arabidopsis thaliana]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/120 (56%), Positives = 88/120 (73%), Gaps = 3/120 (2%)

Query: 15  YLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNT 74
           +LLQL+LSCRKITAQV+     GSSTI+A+ASSS+Q+F +   + L  FP  + FWDS T
Sbjct: 8   HLLQLVLSCRKITAQVT---QPGSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSKT 64

Query: 75  VVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAE 134
              VG+KLG +LRE+G+D V I+  EE+SRP + R  VLPLFDSVRR G+ VDG E+L +
Sbjct: 65  ASRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQLND 124

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433866|ref|XP_002265052.1| PREDICTED: uncharacterized protein LOC100264652 [Vitis vinifera]

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 89/118 (75%), Gaps = 3/118 (2%)

Query: 15  YLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNT 74
           +LL+L+LSCRK+TAQV+   S  + +IVA+ASSS+ +F + Y +KL+ FP+ H FWD+  
Sbjct: 7   HLLRLVLSCRKLTAQVT---SPRTDSIVAMASSSENEFLAQYRAKLHRFPRSHNFWDAKI 63

Query: 75  VVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKL 132
              +G+KLG +LR+IG+ +V I++ EELSRP + R MV+PLF+SVRR G+ V G EKL
Sbjct: 64  ASRIGEKLGLRLRDIGVSDVEIDIHEELSRPIHHRRMVMPLFESVRRVGISVSGAEKL 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824307|ref|XP_002880036.1| hypothetical protein ARALYDRAFT_483437 [Arabidopsis lyrata subsp. lyrata] gi|297325875|gb|EFH56295.1| hypothetical protein ARALYDRAFT_483437 [Arabidopsis lyrata subsp. lyrata]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 85/118 (72%), Gaps = 3/118 (2%)

Query: 15  YLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNT 74
           +LLQL+LSCRKITAQV+     GSSTIVA+ASSS+Q+F     + L  FP  + FWDS T
Sbjct: 8   HLLQLVLSCRKITAQVT---QPGSSTIVAMASSSEQEFLVKSRANLYRFPHSNNFWDSKT 64

Query: 75  VVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKL 132
              VG+KLG +LR++G+D V I+  EE+SRP   R  VLPLFDSVRR G+ VDG ++L
Sbjct: 65  ASRVGEKLGLRLRDLGVDVVSIDADEEISRPIQHRKRVLPLFDSVRRTGIRVDGTDQL 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446251|ref|XP_004140885.1| PREDICTED: uncharacterized protein LOC101204363 [Cucumis sativus] gi|449499455|ref|XP_004160822.1| PREDICTED: uncharacterized LOC101204363 [Cucumis sativus]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 91/119 (76%), Gaps = 3/119 (2%)

Query: 15  YLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNT 74
           +LL+L+LSCRKITAQV++ A++       +ASSS+Q+F ++Y SKL+ FP+ + FWDS  
Sbjct: 7   HLLRLVLSCRKITAQVTNPATSSIIA---MASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63

Query: 75  VVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLA 133
              VG+KLG +L+EIG+ +V I+LAEELSRP   R MVLPLFDSV+R+GV VDG EKL 
Sbjct: 64  ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEKLG 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133130|ref|XP_002327968.1| predicted protein [Populus trichocarpa] gi|222837377|gb|EEE75756.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 93/123 (75%), Gaps = 7/123 (5%)

Query: 14  RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQD-FYSHY-HSKLNPFPKRHRFWD 71
           ++LL+L+LSCRKITAQV++  +   STI+A+ASS++Q+ F SHY ++ L+ FP++   WD
Sbjct: 6   QHLLRLVLSCRKITAQVTNPTT---STIIAMASSAEQESFLSHYRNTTLSRFPRQS--WD 60

Query: 72  SNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEK 131
           S     VG+KLG +L+ IG+ N+ I+L EELSRP + R  VLPLFDSV+R G+VVDG EK
Sbjct: 61  SKAASRVGEKLGFRLKGIGVSNIYIDLNEELSRPIHYRKRVLPLFDSVKRVGIVVDGAEK 120

Query: 132 LAE 134
           L E
Sbjct: 121 LGE 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743773|emb|CBI36656.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 84/110 (76%), Gaps = 3/110 (2%)

Query: 15  YLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNT 74
           +LL+L+LSCRK+TAQV+   S  + +IVA+ASSS+ +F + Y +KL+ FP+ H FWD+  
Sbjct: 7   HLLRLVLSCRKLTAQVT---SPRTDSIVAMASSSENEFLAQYRAKLHRFPRSHNFWDAKI 63

Query: 75  VVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGV 124
              +G+KLG +LR+IG+ +V I++ EELSRP + R MV+PLF+SVRR G+
Sbjct: 64  ASRIGEKLGLRLRDIGVSDVEIDIHEELSRPIHHRRMVMPLFESVRRVGI 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550370|ref|XP_003543560.1| PREDICTED: uncharacterized protein LOC100812032 [Glycine max]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 88/121 (72%), Gaps = 3/121 (2%)

Query: 10  QKYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRF 69
             + R++LQL++SCRKITAQV++T ++      A+ASSS+Q+F +HY ++LN FP+ HRF
Sbjct: 6   HNHQRHVLQLVMSCRKITAQVTNTTTSSII---AMASSSEQEFVAHYRAQLNRFPRSHRF 62

Query: 70  WDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGL 129
           WD+     VG+KLG +LREIG+  V I+  EE SRP + R+M+ PLF S++ AG+ V G+
Sbjct: 63  WDAKVASRVGEKLGFRLREIGVTTVQIDPREEQSRPVHYRVMLSPLFHSIKNAGIHVSGV 122

Query: 130 E 130
           +
Sbjct: 123 D 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093150|ref|XP_002309809.1| predicted protein [Populus trichocarpa] gi|222852712|gb|EEE90259.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 91/123 (73%), Gaps = 7/123 (5%)

Query: 14  RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQD-FYSHY-HSKLNPFPKRHRFWD 71
           ++LL+L+LSCRKITAQVS+  +   STI+A+ASSS+Q+ F S Y ++ L+ F ++ R  D
Sbjct: 6   QHLLRLVLSCRKITAQVSNPTT---STIIAMASSSEQESFLSIYRNTSLSIFSRQSR--D 60

Query: 72  SNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEK 131
           S T   VG+KLG +L+EIG+ N+ I+L EELSRP + R  VLPLF SV+R G+ VDG EK
Sbjct: 61  SKTASRVGEKLGFRLKEIGVKNIYIDLNEELSRPIHYRKRVLPLFVSVKRVGIEVDGAEK 120

Query: 132 LAE 134
           L E
Sbjct: 121 LGE 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454469|ref|XP_003597515.1| hypothetical protein MTR_2g098870 [Medicago truncatula] gi|355486563|gb|AES67766.1| hypothetical protein MTR_2g098870 [Medicago truncatula]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 82/124 (66%), Gaps = 3/124 (2%)

Query: 9   SQKYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHR 68
           + K   ++LQLILSCRKITAQV++  ++      A+ASSS+Q+F SH  S LN FP+ HR
Sbjct: 3   TTKTNHHVLQLILSCRKITAQVTNPTTSSII---AMASSSEQEFLSHNRSVLNRFPRSHR 59

Query: 69  FWDSNTVVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDG 128
           FWD+     VG+KL  +L++IGI  V I+  EELS P + R MV PLF SV+R  V V G
Sbjct: 60  FWDAKIASRVGEKLAFRLKDIGITGVQIDANEELSHPLHYRTMVSPLFRSVQRVCVHVFG 119

Query: 129 LEKL 132
            + L
Sbjct: 120 ADNL 123

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2041066	133	AT2G43310 "AT2G43310" [Arabido	0.761	0.864	0.576	2.7e-29

TAIR|locus:2041066 AT2G43310 "AT2G43310" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 68/118 (57%), Positives = 87/118 (73%)

Query:    15 YLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNT 74
             +LLQL+LSCRKITAQV+     GSSTI+A+ASSS+Q+F +   + L  FP  + FWDS T
Sbjct:     8 HLLQLVLSCRKITAQVTQP---GSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSKT 64

Query:    75 VVVVGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKL 132
                VG+KLG +LRE+G+D V I+  EE+SRP + R  VLPLFDSVRR G+ VDG E+L
Sbjct:    65 ASRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQL 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       151   0.00097  104 3  11 22  0.46    31
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  129 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.91u 0.11s 15.02t   Elapsed:  00:00:01
  Total cpu time:  14.91u 0.11s 15.02t   Elapsed:  00:00:01
  Start:  Fri May 10 05:22:25 2013   End:  Fri May 10 05:22:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT2G43310 unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 12 plant structures; EXPRESSED DURING- 8 growth stages; Has 8 Blast hits to 8 proteins in 4 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (133 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
CHL00139	109	rpl18 ribosomal protein L18; Validated	99.86
cd00432	103	Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is	99.86
TIGR00060	114	L18_bact ribosomal protein L18, bacterial type. Th	99.85
PF00861	119	Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr	99.84
PRK05593	117	rplR 50S ribosomal protein L18; Reviewed	99.83
PTZ00032	211	60S ribosomal protein L18; Provisional	99.76
COG0256	125	RplR Ribosomal protein L18 [Translation, ribosomal	99.62
PRK08569	193	rpl18p 50S ribosomal protein L18P; Reviewed	99.6
KOG3333	188	consensus Mitochondrial/chloroplast ribosomal prot	98.22
PTZ00069	300	60S ribosomal protein L5; Provisional	96.9
PF00411	110	Ribosomal_S11: Ribosomal protein S11; InterPro: IP	96.04
CHL00041	116	rps11 ribosomal protein S11	95.71
TIGR03632	108	bact_S11 30S ribosomal protein S11. This model des	95.43
PTZ00090	233	40S ribosomal protein S11; Provisional	94.92
PRK05309	128	30S ribosomal protein S11; Validated	94.42
TIGR03628	114	arch_S11P archaeal ribosomal protein S11P. This mo	92.5
PRK09607	132	rps11p 30S ribosomal protein S11P; Reviewed	92.33
PTZ00129	149	40S ribosomal protein S14; Provisional	89.11

>CHL00139 rpl18 ribosomal protein L18; Validated

Probab=99.86  E-value=1.4e-21  Score=145.61  Aligned_cols=96  Identities=23%  Similarity=0.232  Sum_probs=89.6

Q ss_pred             cCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877           12 YPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI   91 (151)
Q Consensus        12 ~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi   91 (151)
                      ..++-|.+|.||++|+|||+|.   +++.++|+|||.|++++..+.          +..|.+||..||++||+|+++.||
T Consensus        13 ~~rpRL~V~rSnkhiyaQvidd---~~g~tlasaST~ek~~~~~~~----------~~~n~~aA~~vG~lla~ra~~~gi   79 (109)
T CHL00139         13 AERPRLSVFRSNKHIYAQIIDD---TNGKTLVACSTLEPDVKSSLS----------STSTCDASKLVGQKLAKKSLKKGI   79 (109)
T ss_pred             CCCCEEEEEEeCCeEEEEEEEC---CCCCEEEEEecCchhhhcccc----------CCCCHHHHHHHHHHHHHHHHHCCC
Confidence            4466799999999999999998   899999999999999998876          569999999999999999999999


Q ss_pred             ceeEeechhhccccccccchhhHHHHHHHHcCee
Q 031877           92 DNVMINLAEELSRPANQRIMVLPLFDSVRRAGVV  125 (151)
Q Consensus        92 ~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVk  125 (151)
                      +.|.+|..     +.+||++|.++.+++|++|++
T Consensus        80 ~~vvfDrg-----g~~yhGrV~a~a~~are~GL~  108 (109)
T CHL00139         80 TKVVFDRG-----GKLYHGRIKALAEAAREAGLQ  108 (109)
T ss_pred             CEEEEcCC-----CCccchHHHHHHHHHHHhCCC
Confidence            99999965     888999999999999999986

>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit

Probab=99.86  E-value=3.3e-21  Score=138.14  Aligned_cols=96  Identities=21%  Similarity=0.168  Sum_probs=90.7

Q ss_pred             ccCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcC
Q 031877           11 KYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIG   90 (151)
Q Consensus        11 ~~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~G   90 (151)
                      ..++|-|.++.||++|+|||+|.   .++.++++|||.|++++.++.          ..+|..||..||+.||+|+++.|
T Consensus         8 ~~~~~RL~v~~Sn~~i~aqvi~~---~~~~vl~sast~e~~~~~~~~----------~~~n~~aA~~vG~~la~r~~~~g   74 (103)
T cd00432           8 TQERPRLVVRKSNKHIYAQIIDD---SGDKTLVSASTLELAIKGVLG----------SGNNVEAAYLVGRLLAKRALEKG   74 (103)
T ss_pred             cCCCCEEEEEEeCCEEEEEEEEe---CcCeEEEEEecCchhhccccc----------CCCcHHHHHHHHHHHHHHHHHCC
Confidence            44689999999999999999999   899999999999999998886          66999999999999999999999


Q ss_pred             cceeEeechhhccccccccchhhHHHHHHHHcCe
Q 031877           91 IDNVMINLAEELSRPANQRIMVLPLFDSVRRAGV  124 (151)
Q Consensus        91 i~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GV  124 (151)
                      +..|.+|..     +.+||++|+++++++|+.||
T Consensus        75 i~~vv~D~~-----~~~~~grv~a~~~~~r~~Gl  103 (103)
T cd00432          75 IKKVVFDRG-----GYRYHGRVKALAKGAREGGL  103 (103)
T ss_pred             CCEEEEeCC-----CcccccHHHHHHHHHHHcCC
Confidence            999999987     88889999999999999996

L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.

>TIGR00060 L18_bact ribosomal protein L18, bacterial type

Probab=99.85  E-value=7e-21  Score=143.48  Aligned_cols=93  Identities=27%  Similarity=0.293  Sum_probs=86.9

Q ss_pred             ccCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcC
Q 031877           11 KYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIG   90 (151)
Q Consensus        11 ~~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~G   90 (151)
                      .|.+.-|.+|.||++|+|||+|.   .+++++|+|||.|++|+              ..+|.+||..||+.||+|+++.|
T Consensus        21 ~~~rpRL~V~rSnk~iyaQiIdd---~~~~tlasaST~ek~~~--------------~~~n~~aA~~vG~~la~ra~~~g   83 (114)
T TIGR00060        21 EANRPRLVVFRSNRHIYAQVIDD---SKSEVLASASTLEKKLK--------------YTGNKDAAKKVGKLVAERLKEKG   83 (114)
T ss_pred             CCCCcEEEEEEeCCeEEEEEEEC---CCCEEEEEEecchhhhc--------------CCCCHHHHHHHHHHHHHHHHHCC
Confidence            45677999999999999999999   99999999999999975              23899999999999999999999


Q ss_pred             cceeEeechhhccccccccchhhHHHHHHHHcCee
Q 031877           91 IDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVV  125 (151)
Q Consensus        91 i~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVk  125 (151)
                      |+.|.+|..     +++||++|+|+.|++|++|++
T Consensus        84 i~~vvfDrg-----g~~YhGrv~A~a~~aRe~Gl~  113 (114)
T TIGR00060        84 IKDVVFDRG-----GYKYHGRVAALAEAAREAGLN  113 (114)
T ss_pred             CCEEEEeCC-----CCcchHHHHHHHHHHHHhCCC
Confidence            999999965     999999999999999999986

The archaeal and eukaryotic type rpL18 is not detectable under this model.

>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.84  E-value=3.1e-20  Score=137.87  Aligned_cols=98  Identities=22%  Similarity=0.213  Sum_probs=89.5

Q ss_pred             CceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcc
Q 031877           13 PRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGID   92 (151)
Q Consensus        13 ~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~   92 (151)
                      .+|-|.+|.||++|+|||+|.   .++.++++|||.|++|+...-        .++..|..||..||++||+|+++.||.
T Consensus        22 ~~~RL~V~~Snk~i~aQii~~---~~~~~l~~aSt~~~~l~~~~~--------~~~~~n~~aa~~vG~lla~ra~~~gi~   90 (119)
T PF00861_consen   22 ERPRLVVFRSNKHIYAQIIDD---SKGGTLASASTLSKELKKYGW--------KGSTKNVEAAYLVGELLAKRALEKGIA   90 (119)
T ss_dssp             SSEEEEEEEESSEEEEEEEEC---TTTEEEEEEEEETTTGGGTT---------SSTTSSHHHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCEEEEEeccCeEEEEEEee---CCCCeEEEEEecchhhhhhhh--------ccCCCCEehHHHHHHHHHHHHHHcCCc
Confidence            578999999999999999999   999999999999999998532        135689999999999999999999999


Q ss_pred             eeEeechhhccccccccchhhHHHHHHHHcCeee
Q 031877           93 NVMINLAEELSRPANQRIMVLPLFDSVRRAGVVV  126 (151)
Q Consensus        93 ~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv  126 (151)
                      .|.+|..     +.+||++|+++.+++|+.|+++
T Consensus        91 ~v~fdr~-----~~~y~grv~a~~~~~re~Gl~f  119 (119)
T PF00861_consen   91 KVVFDRG-----GYKYHGRVKALADGAREGGLEF  119 (119)
T ss_dssp             EEEECTS-----TSSSSSHHHHHHHHHHHTTCB-
T ss_pred             EEEEcCC-----CCcccHHHHHHHHHHHHcCCCC
Confidence            9999986     9999999999999999999974

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....

>PRK05593 rplR 50S ribosomal protein L18; Reviewed

Probab=99.83  E-value=3.2e-20  Score=139.53  Aligned_cols=95  Identities=25%  Similarity=0.241  Sum_probs=87.5

Q ss_pred             CceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcc
Q 031877           13 PRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGID   92 (151)
Q Consensus        13 ~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~   92 (151)
                      .++-|.+|.||++|+|||+|.   .++.++++|||.|++++..+.           ..|.+||..||++||.|+++.||+
T Consensus        23 ~rpRL~V~~SnkhiyAQvidd---~~~~tl~saST~e~~~k~~~~-----------~~n~~aa~~vG~~la~ra~~~gi~   88 (117)
T PRK05593         23 ERPRLSVFRSNRHIYAQVIDD---VKGKTLASASTLEKDVRAGLK-----------GGNKEAAKKVGKLIAERAKAKGIK   88 (117)
T ss_pred             CCCEEEEEEeCCeEEEEEEEC---CCCEEEEEEecCcHhHhcccc-----------CCCHHHHHHHHHHHHHHHHHCCCC
Confidence            366899999999999999999   999999999999999965553           389999999999999999999999


Q ss_pred             eeEeechhhccccccccchhhHHHHHHHHcCeee
Q 031877           93 NVMINLAEELSRPANQRIMVLPLFDSVRRAGVVV  126 (151)
Q Consensus        93 ~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv  126 (151)
                      .|.+|..     +.+||++|+++.+.+|++|++.
T Consensus        89 ~vvfDrg-----~~~yhGrV~a~a~~are~Gl~f  117 (117)
T PRK05593         89 QVVFDRG-----GYKYHGRVKALADAAREAGLKF  117 (117)
T ss_pred             EEEEcCC-----CCcccHHHHHHHHHHHHhCCCC
Confidence            9999965     9999999999999999999863

>PTZ00032 60S ribosomal protein L18; Provisional

Probab=99.76  E-value=3.6e-18  Score=141.15  Aligned_cols=105  Identities=15%  Similarity=0.130  Sum_probs=94.3

Q ss_pred             ccCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhcc----ccCCCCCCCCcccchhHHHHHHHHHHHHH
Q 031877           11 KYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYH----SKLNPFPKRHRFWDSNTVVVVGQKLGSQL   86 (151)
Q Consensus        11 ~~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e----~~l~~~~rs~~~~DakaAa~VGe~La~RL   86 (151)
                      --+++-|.+|-|+++|.||++|.   .+++++|+|||.|++++..+.    ...|+.-+.  ..|.+||..||+.+|+|+
T Consensus       102 gkrrPRLsV~RSnkHIYAQIIDD---~~~~TLasaSTlek~l~~~~~~~~~~~~n~~~~~--g~nieaA~~VGk~IAerA  176 (211)
T PTZ00032        102 GKRRPRLTLKNTNNQMYATIVDD---YTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNN--GGTIKAAYELGKLIGRKA  176 (211)
T ss_pred             CCCcceEEEEecCCeEEEEEEEC---CCCCEEEEecCCCHHHHhhhcccccccccccccC--CCcHHHHHHHHHHHHHHH
Confidence            34688999999999999999999   999999999999999988764    345655444  489999999999999999


Q ss_pred             HhcCcceeEeechhhccccccccchhhHHHHHHHHcCee
Q 031877           87 REIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVV  125 (151)
Q Consensus        87 k~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVk  125 (151)
                      +..||+.|.+|-.     +++|||+|+||-|+.|++|++
T Consensus       177 l~kGI~kVvFDRg-----Gy~YHGRVkALAdaARe~GLk  210 (211)
T PTZ00032        177 LSKGISKVRFDRA-----HYKYAGKVEALAEGARAVGLQ  210 (211)
T ss_pred             HHCCCCEEEEeCC-----CCeehhHHHHHHHHHHHcCCC
Confidence            9999999999965     999999999999999999986

>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=3.2e-15  Score=115.06  Aligned_cols=97  Identities=24%  Similarity=0.233  Sum_probs=86.1

Q ss_pred             ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877           14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN   93 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~   93 (151)
                      +.-|=.|.|+++|.|||+|.   ..+..+++||+.|++|+. +-     +  .....|..||..||+.+|+|+++.||++
T Consensus        29 rpRL~V~rSnkhi~aQiId~---~~~~tla~aSt~~~~l~~-~g-----~--~~~~~N~~aA~~vG~lia~ra~~kgi~~   97 (125)
T COG0256          29 RPRLVVRRSNRHIYAQIIDD---VKGGTLASASTLSKELRK-YG-----K--KGGGGNTEAAYLVGKLIAERALAKGIEE   97 (125)
T ss_pred             CcEEEEEEeCCcEEEEEEEc---CCCceEEEEEcchHHHHh-hc-----c--cCCCCCHHHHHHHHHHHHHHHHHcCCcE
Confidence            55688899999999999999   999999999999999976 22     1  1123699999999999999999999999


Q ss_pred             eEeechhhccccccccchhhHHHHHHHHcCeee
Q 031877           94 VMINLAEELSRPANQRIMVLPLFDSVRRAGVVV  126 (151)
Q Consensus        94 V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv  126 (151)
                      |-||..     +++||++|.|+.++.|++|+++
T Consensus        98 vVfdr~-----g~~yhgRV~Ala~~AreaGL~f  125 (125)
T COG0256          98 VVFDRG-----GYKYHGRVAALADGAREAGLEF  125 (125)
T ss_pred             EEEcCC-----CCCcchHHHHHHHHHHHcCcCC
Confidence            999998     9999999999999999999864

>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed

Probab=99.60  E-value=6.5e-15  Score=119.91  Aligned_cols=98  Identities=14%  Similarity=0.177  Sum_probs=88.7

Q ss_pred             ceeeEEEEeeceeEEEee--cCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877           14 RYLLQLILSCRKITAQVS--DTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI   91 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv--~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi   91 (151)
                      ++-|-++.||++|.|||+  |.   ..+.++|+|||.|.+++....          ...|..||..||+.||.|++..||
T Consensus        32 kpRLvV~rSNkhIyaQiI~~dd---~gd~tLaSAsS~el~~~g~~~----------~~~N~~AAy~vG~llA~ral~kGi   98 (193)
T PRK08569         32 KPRLVVRKTNKHVIAQIVKYDP---KGDRTLASAHSRELAKYGWKG----------DTGNTPAAYLTGLLAGKKALKAGV   98 (193)
T ss_pred             CCEEEEEEeCCeEEEEEEEccC---CCCEEEEEEecCchhhccccC----------CCCCHHHHHHHHHHHHHHHHHCCC
Confidence            467889999999999999  78   899999999999999866554          458999999999999999999999


Q ss_pred             ceeEeechhhcccccccc--chhhHHHHHHHHcCeeeecc
Q 031877           92 DNVMINLAEELSRPANQR--IMVLPLFDSVRRAGVVVDGL  129 (151)
Q Consensus        92 ~~V~id~~eE~sr~~kyr--~kV~al~dSlR~~GVkv~g~  129 (151)
                      +.|-+|..     +.+||  ++|.|+.+..|++|+++=--
T Consensus        99 ~~vvfDrG-----g~~yh~gGRV~A~akgArd~GL~fPh~  133 (193)
T PRK08569         99 EEAVLDIG-----LHRPTKGSRVFAALKGAIDAGLEIPHG  133 (193)
T ss_pred             CEEEEecC-----CccccCCccHHHHHHHHHHcCCcCCCC
Confidence            99999997     88888  99999999999999997543

>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=6e-06  Score=67.90  Aligned_cols=101  Identities=17%  Similarity=0.215  Sum_probs=84.8

Q ss_pred             eeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCccee
Q 031877           15 YLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNV   94 (151)
Q Consensus        15 yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~V   94 (151)
                      |-|+++-+-.++.+-|.|-   +.|. |.+||+.|-++++++-          ++.|.-|+.-||.+||.|-.+-||...
T Consensus        61 h~lev~~~~~hveg~v~H~---~~gv-vvSAST~EwaIk~qLY----------st~dtsA~~niGRVLAqRCLqsGI~fm  126 (188)
T KOG3333|consen   61 HRLEVIRTQHHVEGLVEHQ---NGGV-VVSASTREWAIKKQLY----------STRDTSACENIGRVLAQRCLQSGINFM  126 (188)
T ss_pred             eEEEEeecccceeeeeeEe---cCCE-EEEecccchHHHHHHh----------hccchHHHHHHHHHHHHHHHHhCccee
Confidence            6789999999999999999   6665 5579999999999999          889999999999999999999999998


Q ss_pred             Eeechhhc-cccccccchhhHHHHHHHHcCeeeeccccccc
Q 031877           95 MINLAEEL-SRPANQRIMVLPLFDSVRRAGVVVDGLEKLAE  134 (151)
Q Consensus        95 ~id~~eE~-sr~~kyr~kV~al~dSlR~~GVkv~g~~~l~~  134 (151)
                      ..+...|- -....     .-|+..|.+.||.+--...+.+
T Consensus       127 ~~~~t~ea~~~s~~-----q~l~~a~~e~Gv~lkEP~ri~~  162 (188)
T KOG3333|consen  127 VYQPTPEAAASSSM-----QRLQSAMTEGGVVLKEPQRIYE  162 (188)
T ss_pred             ccCCChhhccchHH-----HHHHHHHHhCCeeecCcccccc
Confidence            88876554 33332     3389999999999876655543

>PTZ00069 60S ribosomal protein L5; Provisional

Probab=96.90  E-value=0.0039  Score=54.69  Aligned_cols=65  Identities=17%  Similarity=0.179  Sum_probs=51.6

Q ss_pred             ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhc
Q 031877           14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREI   89 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~   89 (151)
                      .|-|=.-+||+.|.||++.. .-.-..|+|+|.|.|-.          +||=.+...|-.||-..|=.||.|+...
T Consensus        48 K~RlVVR~TN~~ii~Qiv~~-~~~GD~vl~sA~S~eL~----------kyG~k~gl~N~~AAY~TGlL~arR~L~k  112 (300)
T PTZ00069         48 KYRLVVRITNKDIICQIVYA-TIVGDKVLAAAYSHELP----------RFGIPVGLTNYAAAYATGLLLARRLLKK  112 (300)
T ss_pred             CceEEEEEECCcEEEEEEEe-ecCCCEEEEEeehhhHh----------hcCcCCCCccHHHHHHHHHHHHHHHHHh
Confidence            34455668999999999987 44566899999987732          3555567789999999999999999888

>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.04  E-value=0.11  Score=38.36  Aligned_cols=92  Identities=12%  Similarity=0.259  Sum_probs=69.8

Q ss_pred             eeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcceeE
Q 031877           16 LLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVM   95 (151)
Q Consensus        16 vLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~V~   95 (151)
                      ++-+..|-+-+-..|+|.    +|.++..+|+----|+..-+            ...-||..+++.++..+++.|+..|+
T Consensus         2 iihI~~s~NNt~vtlTd~----~G~~~~~~S~G~~gfK~~rk------------~t~~Aa~~~a~~~~~~~~~~gi~~v~   65 (110)
T PF00411_consen    2 IIHIKSSFNNTIVTLTDL----KGNVLFWSSAGSLGFKGARK------------STPYAAQQAAEKIAKKAKELGIKTVR   65 (110)
T ss_dssp             EEEEEEESSEEEEEEEET----TSEEEEEEETTTSSTTTTCG------------SSHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             EEEEEecCCCEEEEEECC----CCCEEEEEeccccccccccc------------cCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            355667777778889998    68888888886556666555            56788999999999999999999999


Q ss_pred             eechhhccccccccchhhHHHHHHHHcCeeeeccc
Q 031877           96 INLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLE  130 (151)
Q Consensus        96 id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~  130 (151)
                      +-++    -+-..|   .+++..|+..|+++.-.+
T Consensus        66 v~ik----G~g~gr---~~~lk~l~~~gl~I~~I~   93 (110)
T PF00411_consen   66 VKIK----GFGPGR---EAALKALKKSGLKIVSIT   93 (110)
T ss_dssp             EEEE----SSSTTH---HHHHHHHHHTTSEEEEEE
T ss_pred             EEEc----CCCccH---HHHHHHHHhcCCEEEEEE
Confidence            9987    332222   267788899998865433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....

>CHL00041 rps11 ribosomal protein S11

Probab=95.71  E-value=0.12  Score=38.88  Aligned_cols=92  Identities=12%  Similarity=0.224  Sum_probs=71.9

Q ss_pred             eeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcceeE
Q 031877           16 LLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVM   95 (151)
Q Consensus        16 vLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~V~   95 (151)
                      ++-.+.|-+-+-..++|.    .|.+++.+|+----|+...+            .-.-||-.++|.++..+++.|+..|+
T Consensus        15 i~hI~~t~NNTiiTlTd~----~G~~l~~~S~G~~gfKg~rK------------~T~~Aa~~~a~~~~~~~~~~gi~~v~   78 (116)
T CHL00041         15 VIHIQASFNNTIVTVTDV----RGRVISWSSAGACGFKGARK------------GTPFAAQTAAENAIRTVIDQGMKRAE   78 (116)
T ss_pred             EEEEEcccCCEEEEEEcC----CCCEEEEEecCceeeCCCcc------------CCHHHHHHHHHHHHHHHHHcCCcEEE
Confidence            666777777778888998    57889988887656766655            33678999999999999999999999


Q ss_pred             eechhhccccccccchhhHHHHHHHHcCeeeeccc
Q 031877           96 INLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLE  130 (151)
Q Consensus        96 id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~  130 (151)
                      |-++    =+=..|   .+++.+|++.|+++.-..
T Consensus        79 I~ik----G~G~Gr---~~~ir~l~~~glkI~~I~  106 (116)
T CHL00041         79 VMIK----GPGLGR---DTALRAIRRSGLKLSSIR  106 (116)
T ss_pred             EEEE----CCCCcH---HHHHHHHHHCCCEEEEEE
Confidence            9987    222333   677899999999886544

>TIGR03632 bact_S11 30S ribosomal protein S11

Probab=95.43  E-value=0.18  Score=37.34  Aligned_cols=91  Identities=11%  Similarity=0.200  Sum_probs=67.7

Q ss_pred             eEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcceeEe
Q 031877           17 LQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMI   96 (151)
Q Consensus        17 LrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~V~i   96 (151)
                      +-.+.|.+-+-..++|.    +|.+++.+|+---.|+..-+            .-.-||..++|.++..+++.|+..|+|
T Consensus         3 ~hI~~s~NNT~itlTd~----~g~~~~~~S~G~~gfkg~rk------------~t~~Aa~~~a~~~~~~~~~~gi~~v~v   66 (108)
T TIGR03632         3 AHIHATFNNTIVTITDP----QGNVLSWASAGAVGFKGSKK------------STPYAAQLAAEDAAKKAKEFGMKTVDV   66 (108)
T ss_pred             EEEEccCCCEEEEEEcC----CCCEEEEEecCceeeCCCcc------------CCHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence            44556667777788898    56678888876555666644            346678899999999999999999999


Q ss_pred             echhhccccccccchhhHHHHHHHHcCeeeeccc
Q 031877           97 NLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLE  130 (151)
Q Consensus        97 d~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~  130 (151)
                      -++     ++-+ ++ .+++.+|++.|+++.-.+
T Consensus        67 ~~k-----G~G~-gr-~~~ir~l~~~glkI~~I~   93 (108)
T TIGR03632        67 YVK-----GPGA-GR-ESAIRALQAAGLEVTSIK   93 (108)
T ss_pred             EEE-----CCCC-cH-HHHHHHHHHCCCEEEEEE
Confidence            996     3332 22 678899999999876443

This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.

>PTZ00090 40S ribosomal protein S11; Provisional

Probab=94.92  E-value=0.29  Score=42.05  Aligned_cols=95  Identities=20%  Similarity=0.275  Sum_probs=78.9

Q ss_pred             CceeeEEEEeeceeEEEeecCCCCCCce--EEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcC
Q 031877           13 PRYLLQLILSCRKITAQVSDTASAGSST--IVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIG   90 (151)
Q Consensus        13 ~~yvLrL~lS~k~ITAqVv~~~~~~tst--IVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~G   90 (151)
                      .++.|-+..|-.-+-++|+|.    .|.  +++-+|+----|+..-.            .-+-||-.++|..+...++.|
T Consensus       117 ~~f~~vI~aSfNNTIVTlTD~----~GNv~tl~WSSAG~~GFKGsKK------------sTpfAAQ~aae~aakka~~~G  180 (233)
T PTZ00090        117 DRFMLVITTSKNNVHAQVVNK----SKNYKTVFGSFAGNVGFRKKLQ------------QSERCAYRIGENIAKKCRRLG  180 (233)
T ss_pred             CcEEEEEEeccCcEEEEEEeC----CCCEEEEEEEcccccCcccCcc------------CCHHHHHHHHHHHHHHHHHcC
Confidence            356677777888899999998    555  58888888777887776            668899999999999999999


Q ss_pred             cceeEeechhhccccccccchhhHHHHHHHHcCeeeecccc
Q 031877           91 IDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEK  131 (151)
Q Consensus        91 i~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~~  131 (151)
                      +..|+|-++    .|-    ..-+.+.+|+..|++|.-...
T Consensus       181 Ik~V~V~vK----GpG----gREtALRaL~~~GLkIt~I~D  213 (233)
T PTZ00090        181 IFAVDIKFR----RIM----RVETVLQAFYANGLQVTQIIH  213 (233)
T ss_pred             CeEEEEEEe----CCC----hHHHHHHHHHHCCCEEEEEEE
Confidence            999999998    552    378999999999999976543

>PRK05309 30S ribosomal protein S11; Validated

Probab=94.42  E-value=0.57  Score=35.96  Aligned_cols=96  Identities=13%  Similarity=0.201  Sum_probs=72.4

Q ss_pred             cCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877           12 YPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI   91 (151)
Q Consensus        12 ~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi   91 (151)
                      |..-++-.+.|..-+-..++|.    +|.+++.+|+----|+..-+            .-.-||-.++|.++..+++.|+
T Consensus        15 ~~~gi~hI~~t~NNTiitlTd~----~G~~~~~~S~G~~gfKg~rK------------~T~~Aa~~aa~~~~~~~~~~gi   78 (128)
T PRK05309         15 IPSGVAHIHATFNNTIVTITDR----QGNVISWASAGGLGFKGSRK------------STPYAAQVAAEDAAKKAKEHGM   78 (128)
T ss_pred             cceeEEEEEccCCCEEEEEEcC----CCCEEEEEecCccEeCCCcc------------CCHHHHHHHHHHHHHHHHHcCC
Confidence            4456777888888888889997    57788888776445665544            3456888899999999999999


Q ss_pred             ceeEeechhhccccccccchhhHHHHHHHHcCeeeeccc
Q 031877           92 DNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLE  130 (151)
Q Consensus        92 ~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~  130 (151)
                      ..|+|-++     ++-+ ++ .+++.+|++.|+++.-.+
T Consensus        79 ~~v~v~ik-----G~G~-Gr-~~air~L~~~glkI~~I~  110 (128)
T PRK05309         79 KTVEVFVK-----GPGS-GR-ESAIRALQAAGLEVTSIK  110 (128)
T ss_pred             cEEEEEEE-----CCCC-cH-HHHHHHHHHCCCEEEEEE
Confidence            99999986     3322 22 678888999999876433

>TIGR03628 arch_S11P archaeal ribosomal protein S11P

Probab=92.50  E-value=1.7  Score=33.25  Aligned_cols=94  Identities=14%  Similarity=0.185  Sum_probs=67.2

Q ss_pred             EEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcceeEeec
Q 031877           19 LILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDNVMINL   98 (151)
Q Consensus        19 L~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~V~id~   98 (151)
                      .+.|-+-.-..|+|.   .-..+++-+|+-..-|+..-+            .-+=||-...|..+.++++.|+..|+|-+
T Consensus         7 I~as~NNTiitvTD~---~G~~~~~~~S~G~~g~kg~kk------------~TpyAAq~aa~~~~~~~~~~Gi~~v~v~i   71 (114)
T TIGR03628         7 IYSSFNNTIITITDI---TGAETIARSSGGMVVKADRDE------------SSPYAAMQAAGRAAEKAKERGITGLHIKV   71 (114)
T ss_pred             EEccCCCeEEEEEcC---CCCEEEEEecCcceEeCCCcc------------CCHHHHHHHHHHHHHHHHHcCCcEEEEEE
Confidence            344555555678887   333668888887777777666            45668889999999999999999999998


Q ss_pred             hhhccccccccch-----hhHHHHHHHHcCeeeecccc
Q 031877           99 AEELSRPANQRIM-----VLPLFDSVRRAGVVVDGLEK  131 (151)
Q Consensus        99 ~eE~sr~~kyr~k-----V~al~dSlR~~GVkv~g~~~  131 (151)
                      +    -.=.+..|     =.+.+.+|++.|+++.-.+.
T Consensus        72 k----G~gg~~~~~~G~Gr~~air~l~~~glkI~~I~D  105 (114)
T TIGR03628        72 R----APGGNGQKSPGPGAQAAIRALARAGLRIGRIED  105 (114)
T ss_pred             E----ecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEE
Confidence            7    21111112     25678999999999875544

This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.

>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed

Probab=92.33  E-value=1.8  Score=34.03  Aligned_cols=99  Identities=15%  Similarity=0.201  Sum_probs=72.3

Q ss_pred             eeeEEEEeeceeEEEeecCCCCCCc-eEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877           15 YLLQLILSCRKITAQVSDTASAGSS-TIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN   93 (151)
Q Consensus        15 yvLrL~lS~k~ITAqVv~~~~~~ts-tIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~   93 (151)
                      =++-.+.|-+-.-..|+|.    .| .+++-+|+-..-|...-+            .-+=||-...|..+.++++.||..
T Consensus        10 gi~hI~as~NNTivtvTD~----~G~~~~~~~S~G~~g~kg~kK------------~TpyAAq~aae~~~~~~~~~Gi~~   73 (132)
T PRK09607         10 GIAHIYASFNNTIITITDL----TGAETIAKSSGGMVVKADRDE------------SSPYAAMQAAEKAAEDAKEKGITG   73 (132)
T ss_pred             eEEEEEcccCCeEEEEEcC----CCCEEEEEecCcceeeCCCcc------------CCHHHHHHHHHHHHHHHHHcCCcE
Confidence            3566667777777789998    45 478888887776766655            445688999999999999999999


Q ss_pred             eEeechhhccccccccch-----hhHHHHHHHHcCeeeecccccc
Q 031877           94 VMINLAEELSRPANQRIM-----VLPLFDSVRRAGVVVDGLEKLA  133 (151)
Q Consensus        94 V~id~~eE~sr~~kyr~k-----V~al~dSlR~~GVkv~g~~~l~  133 (151)
                      |+|-++    -.=-+..|     =...+.+|++.|+++.-.+..-
T Consensus        74 v~v~vk----G~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvT  114 (132)
T PRK09607         74 VHIKVR----APGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVT  114 (132)
T ss_pred             EEEEEE----ecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcC
Confidence            999997    21111111     2467899999999987655443

>PTZ00129 40S ribosomal protein S14; Provisional

Probab=89.11  E-value=5.1  Score=32.25  Aligned_cols=102  Identities=15%  Similarity=0.245  Sum_probs=70.2

Q ss_pred             eeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhc-cccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877           15 YLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHY-HSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN   93 (151)
Q Consensus        15 yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~-e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~   93 (151)
                      =++-.+-|-+-.--.|+|.    +|.+++-+||--.-|+..- +            .-+=||-...|.++..+++.||..
T Consensus        29 Gi~hI~as~NNTiItiTD~----~G~~~~w~SsG~~gfKg~r~K------------sTpyAAq~aa~~~a~k~~~~Gi~~   92 (149)
T PTZ00129         29 GVAHIFASFNDTFIHVTDL----SGRETLVRVTGGMKVKADRDE------------SSPYAAMMAAQDVAARCKELGINA   92 (149)
T ss_pred             EEEEEEcccCCeEEEEEcc----cCCEEEEEecCcceecccccC------------CCHHHHHHHHHHHHHHHHHcCCeE
Confidence            3555566666666678887    5777777777666666554 3            234588889999999999999999


Q ss_pred             eEeechh--hc-c-ccccccchhhHHHHHHHHcCeeeecccccccc
Q 031877           94 VMINLAE--EL-S-RPANQRIMVLPLFDSVRRAGVVVDGLEKLAED  135 (151)
Q Consensus        94 V~id~~e--E~-s-r~~kyr~kV~al~dSlR~~GVkv~g~~~l~~~  135 (151)
                      |+|-+.-  +. + -|=.-   =.+.|..|.+.|+++.-.+..-.|
T Consensus        93 v~V~vr~~gg~~~kg~GpG---r~~airaL~~~glkI~~I~DvTPi  135 (149)
T PTZ00129         93 LHIKLRATGGVRTKTPGPG---AQAALRALARAGLKIGRIEDVTPI  135 (149)
T ss_pred             EEEEEEecCCCCCCCCCCC---HHHHHHHHHHCCCEEEEEEecCCC
Confidence            9999820  00 0 11111   246789999999999876654444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
3r8s_O	116	50S ribosomal protein L18; protein biosynthesis, R	99.87
3bbo_Q	161	Ribosomal protein L18; large ribosomal subunit, sp	99.83
1ovy_A	120	50S ribosomal protein L18; ribosome; NMR {Geobacil	99.82
3v2d_S	112	50S ribosomal protein L18; ribosome associated inh	99.81
2zjr_L	114	50S ribosomal protein L18; ribosome, large ribosom	99.76
1vq8_N	187	50S ribosomal protein L18P; ribosome 50S, protein-	99.73
3j21_O	203	50S ribosomal protein L18P; archaea, archaeal, KIN	99.67
2zkr_n	297	60S ribosomal protein L5; protein-RNA complex, 60S	99.31
3u5e_D	297	60S ribosomal protein L5; translation, ribosome, r	99.02
4a17_M	301	RPL5, 60S ribosomal protein L5; eukaryotic ribosom	99.02
3iz5_Q	304	60S ribosomal protein L5 (L18P); eukaryotic riboso	98.74
2vqe_K	129	30S ribosomal protein S11, 30S ribosomal protein S	96.3
3j20_M	137	30S ribosomal protein S11P; archaea, archaeal, KIN	96.17
3bbn_K	140	Ribosomal protein S11; small ribosomal subunit, sp	95.76
3r8n_K	117	30S ribosomal protein S11; protein biosynthesis, R	95.73
2xzm_K	151	RPS14E; ribosome, translation; 3.93A {Tetrahymena	92.92
3u5c_O	137	RP59A, 40S ribosomal protein S14-A; translation, r	90.01

>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...

Probab=99.87  E-value=5.3e-22  Score=147.87  Aligned_cols=95  Identities=22%  Similarity=0.221  Sum_probs=89.8

Q ss_pred             CceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcc
Q 031877           13 PRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGID   92 (151)
Q Consensus        13 ~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~   92 (151)
                      .+|=|.+|.||++|+|||+|.   .++.++|+|||.|.+++..+.          ..+|..||..||+.||+|+++.||+
T Consensus        21 ~rpRL~V~rSnkhIyAQiidd---~~g~tlasAST~e~~~~~~~~----------~~~n~~AA~~vG~llA~Ral~~GI~   87 (116)
T 3r8s_O           21 GATRLVVHRTPRHIYAQVIAP---NGSEVLVAASTVEKAIAEQLK----------YTGNKDAAAAVGKAVAERALEKGIK   87 (116)
T ss_dssp             TCCEEEEEECSSCEEEEEECT---TSSCEEEECCSSSHHHHTTCS----------CSSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCEEEEEEeCCEEEEEEEEc---CCCeEEEEEeeCchhhccccC----------CCCCHHHHHHHHHHHHHHHHHCCCC
Confidence            578899999999999999999   999999999999999998876          5689999999999999999999999


Q ss_pred             eeEeechhhccccccccchhhHHHHHHHHcCee
Q 031877           93 NVMINLAEELSRPANQRIMVLPLFDSVRRAGVV  125 (151)
Q Consensus        93 ~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVk  125 (151)
                      .|.+|..     ++.||++|+||.|++|++|++
T Consensus        88 ~vvfDrg-----g~~yhGrV~Ala~~are~Gl~  115 (116)
T 3r8s_O           88 DVSFDRS-----GFQYHGRVQALADAAREAGLQ  115 (116)
T ss_dssp             CCEEECT-----TSCSSSHHHHHHHHHHHTTCC
T ss_pred             EEEEecC-----CCcccHHHHHHHHHHHHhCCC
Confidence            9999976     889999999999999999986

>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.83  E-value=3.9e-21  Score=151.43  Aligned_cols=97  Identities=22%  Similarity=0.200  Sum_probs=90.0

Q ss_pred             ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877           14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN   93 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~   93 (151)
                      +.-|.+|.|||+|+|||+|.   .++.++++|||.|++|+..+.     |+..   .|..||..||+.||+|+++.||+.
T Consensus        65 rPRL~V~rSnkhIyAQvIdd---~~g~tLasASTlek~lk~~l~-----~g~~---~n~~AA~~VG~liAeRA~e~GI~~  133 (161)
T 3bbo_Q           65 RPRLCVFRSNKHLYVQVIDD---SKMHTLASASTMQKSISEELD-----YSSS---PTIEVAKKVGEVIASACLEKGITK  133 (161)
T ss_dssp             CCCCEEEECSSCEEEEEECC---TTSCEEEEEEHHHHHHHHCCT-----TCCS---SSHHHHHHHHHHSSSHHHHTSSCC
T ss_pred             CCEEEEEecCCeEEEEEEEC---CCCEEEEEEeCCcHHHHhhcc-----ccCC---CCHHHHHHHHHHHHHHHHHCCCCE
Confidence            45699999999999999999   999999999999999998887     5444   899999999999999999999999


Q ss_pred             eEeechhhccccccccchhhHHHHHHHHcCeee
Q 031877           94 VMINLAEELSRPANQRIMVLPLFDSVRRAGVVV  126 (151)
Q Consensus        94 V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv  126 (151)
                      |.+|..     +++||++|+||.|++|++|++.
T Consensus       134 VvFDRg-----g~~YhGRVkAladaaRe~GL~F  161 (161)
T 3bbo_Q          134 VAFDRG-----GYPYHGRVKALADAAREKGLQF  161 (161)
T ss_dssp             CCCCCS-----SSCSSSTTHHHHHHHTTTTCCC
T ss_pred             EEEeCC-----CCcchHHHHHHHHHHHHhCCcC
Confidence            999976     8999999999999999999863

>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1

Probab=99.82  E-value=2.7e-20  Score=139.87  Aligned_cols=95  Identities=24%  Similarity=0.229  Sum_probs=87.1

Q ss_pred             cCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877           12 YPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI   91 (151)
Q Consensus        12 ~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi   91 (151)
                      ..+|-|.+|.||++|+|||+|.   .++.++|+|||.|.+++  +.          +..|..||..||+.||+|+++.||
T Consensus        26 ~~rpRL~V~rSnkhIyAQiidd---~~~~tl~sAsT~e~~~~--~~----------~~~n~~AA~~vG~llA~Ral~~GI   90 (120)
T 1ovy_A           26 TERPRLSVFRSNKHIYAQIIDD---TKSATIVSASTLDKEFG--LD----------STNNIEAAKKVGELVAKRALEKGI   90 (120)
T ss_dssp             SSCCSEEEEEETTEEEEEEECC---SSCCCEEEESTTSTTTC--SS----------CTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEEEeCCeEEEEEEEc---CCCEEEEEEecCchhhC--cC----------CCCcHHHHHHHHHHHHHHHHHCCC
Confidence            4467899999999999999999   99999999999999976  33          458999999999999999999999


Q ss_pred             ceeEeechhhccccccccchhhHHHHHHHHcCeee
Q 031877           92 DNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVV  126 (151)
Q Consensus        92 ~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv  126 (151)
                      +.|.+|..     +++||++|+++.+.+|+.|++.
T Consensus        91 ~~vvfDrg-----g~~yhgrV~ala~~are~GL~f  120 (120)
T 1ovy_A           91 KQVVFDRG-----GYLYHGRVKALADAAREAGLEF  120 (120)
T ss_dssp             SCCCCCST-----TCSSCSSTHHHHHHHHHHHCCC
T ss_pred             CEEEEecC-----CccccHHHHHHHHHHHHhCCcC
Confidence            99999976     8899999999999999999863

>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...

Probab=99.81  E-value=5e-20  Score=137.41  Aligned_cols=90  Identities=23%  Similarity=0.252  Sum_probs=84.4

Q ss_pred             ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877           14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN   93 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~   93 (151)
                      ++-|.+|.||++|+|||+|.   .++.++|+|||.|.+++               ..|..||..||+.||+|+++.||+.
T Consensus        23 rpRL~V~rSnkhiyAQiidd---~~~~tlasAsT~e~~~k---------------~~n~~AA~~vG~llA~ra~~~GI~~   84 (112)
T 3v2d_S           23 RLRLSVFRSLKHIYAQIIDD---EKGVTLVSASSLALKLK---------------GNKTEVARQVGRALAEKALALGIKQ   84 (112)
T ss_dssp             CCEEEEEECSSCEEEEEEET---TTTEEEEEEETTTTTCC---------------CCHHHHHHHHHHHHHHHHHTTTCCB
T ss_pred             CCEEEEEEeCCeEEEEEEec---CCCeEEEEEEecchhcc---------------CCCHHHHHHHHHHHHHHHHHCCCCE
Confidence            77899999999999999999   99999999999999862               3799999999999999999999999


Q ss_pred             eEeechhhccccccccchhhHHHHHHHHcCeee
Q 031877           94 VMINLAEELSRPANQRIMVLPLFDSVRRAGVVV  126 (151)
Q Consensus        94 V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv  126 (151)
                      |.+|..     ++.||++|++|.|++|++|++.
T Consensus        85 vvfDrg-----g~~yhGrV~Ala~~are~GL~f  112 (112)
T 3v2d_S           85 VAFDRG-----PYKYHGRVKALAEGAREGGLEF  112 (112)
T ss_dssp             CEEECT-----TSCSCSSTTHHHHHHHHTTCBC
T ss_pred             EEEecC-----CCcccHHHHHHHHHHHHcCCCC
Confidence            999976     9999999999999999999863

>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P

Probab=99.76  E-value=2.6e-19  Score=133.90  Aligned_cols=89  Identities=27%  Similarity=0.309  Sum_probs=80.4

Q ss_pred             ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877           14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN   93 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~   93 (151)
                      ++-|.+|.|||+|+|||+|.   .++.++|+|||.|  |    .          +..|..||..||+.||+|+++.||+.
T Consensus        26 rpRL~V~rSnkhIyAQiidd---~~~~tl~sAST~e--l----~----------~~~n~~AA~~vG~llA~Ral~~GI~~   86 (114)
T 2zjr_L           26 RLRLSVYRSSKHIYAQIIDD---SRGQTLAAASSAA--L----K----------SGNKTDTAAAVGKALAAAAAEKGIKQ   86 (114)
T ss_dssp             SEEECCCTTSSCCCCCEEET---TTTEECCCCCSCS--C----C----------TTCSSSSHHHHHHHHHHHHHTTCCCC
T ss_pred             CCEEEEEEeCCeEEEEEEEc---CCCEEEEEEEchH--h----c----------CCCCHHHHHHHHHHHHHHHHHCCCCE
Confidence            56799999999999999999   9999999999999  4    1          34899999999999999999999999


Q ss_pred             eEeechhhccccccccchhhHHHHHHHHcCeee
Q 031877           94 VMINLAEELSRPANQRIMVLPLFDSVRRAGVVV  126 (151)
Q Consensus        94 V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv  126 (151)
                      |.+|..     +++||++|+++.+.+|+.|+++
T Consensus        87 vvfDrg-----g~~yhgrV~Ala~~are~GL~f  114 (114)
T 2zjr_L           87 VVFDRG-----SYKYHGRVKALADAAREGGLDF  114 (114)
T ss_dssp             CEECCC-----SSCSCSHHHHHHHHHHHHC---
T ss_pred             EEEecC-----CccccHHHHHHHHHHHHhCCcC
Confidence            999976     8999999999999999999874

>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...

Probab=99.73  E-value=1.4e-17  Score=133.31  Aligned_cols=99  Identities=15%  Similarity=0.170  Sum_probs=89.5

Q ss_pred             ceeeEEEEeeceeEEEee--cCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877           14 RYLLQLILSCRKITAQVS--DTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI   91 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv--~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi   91 (151)
                      +|-|.+|.|||+|+|||+  |.   ..+.++|+|||.|.+ +..+.     .    +..|..||..||++||.|+++.||
T Consensus        32 rpRL~V~rSnkhIyAQII~~dd---~~~~tlasAsT~e~~-k~~~k-----~----~~~N~~AA~~vG~llA~Ral~kGI   98 (187)
T 1vq8_N           32 KPRLVARKSNKHVRAQLVTLGP---NGDDTLASAHSSDLA-EYGWE-----A----PTGNMPSAYLTGLLAGLRAQEAGV   98 (187)
T ss_dssp             SCEEEEEECSSCEEEEEEECCT---TSCEEEEEEESGGGG-GGTCC-----S----CSSSHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEEeCCcEEEEEEEecC---CCCEEEEEEEccchh-ccccc-----c----CCCcHHHHHHHHHHHHHHHHHCCC
Confidence            578999999999999999  99   999999999999999 65553     1    358999999999999999999999


Q ss_pred             ceeEeechhhcccccccc--chhhHHHHHHHHcCeeeeccc
Q 031877           92 DNVMINLAEELSRPANQR--IMVLPLFDSVRRAGVVVDGLE  130 (151)
Q Consensus        92 ~~V~id~~eE~sr~~kyr--~kV~al~dSlR~~GVkv~g~~  130 (151)
                      +.|.+|..     +++||  ++|+++.+.+|+.|+++---+
T Consensus        99 ~~vvfDrg-----g~~yh~GgRV~Ala~gAre~GL~fph~~  134 (187)
T 1vq8_N           99 EEAVLDIG-----LNSPTPGSKVFAIQEGAIDAGLDIPHND  134 (187)
T ss_dssp             CBCEEECT-----TSCCCTTCHHHHHHHHHHHTTCBCCCCG
T ss_pred             CEEEEcCC-----CceeccchHHHHHHHHhhcCCEeccCCC
Confidence            99999987     89999  999999999999999976544

>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.67  E-value=5.8e-17  Score=131.30  Aligned_cols=99  Identities=13%  Similarity=0.138  Sum_probs=86.3

Q ss_pred             ceeeEEEEeeceeEEEeec--CCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877           14 RYLLQLILSCRKITAQVSD--TASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI   91 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~--~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi   91 (151)
                      +|-|-+|.|||+|+|||+|  .   ..+.++|+|||.|.+++-...         ....|..||..||++||.|+++.||
T Consensus        32 kpRL~V~rSnkhIyAQIId~d~---~g~~tLasAST~El~lk~g~~---------~~~~N~~AA~~vG~llA~Ral~kGI   99 (203)
T 3j21_O           32 KPRLVVRKSLNHHIAQIIVYDP---KGDRTLVSAHTRELIRDFGWK---------GHCGNTPSAYLLGLLIGYKAKQAGI   99 (203)
T ss_dssp             CCEEEEEECSSCEEEEEEECCT---TSCEEEEEECSTTTSSSSSCC---------SCTTSHHHHHHHHHHSSSSTTSSCC
T ss_pred             CCEEEEEEeCCeEEEEEEEecC---CCCeEEEEEEccchhhhhccc---------CCCCcHHHHHHHHHHHHHHHHhCCC
Confidence            6789999999999999998  5   678999999999977532221         2457999999999999999999999


Q ss_pred             ceeEeechhhccccccc--cchhhHHHHHHHHcCeeeecc
Q 031877           92 DNVMINLAEELSRPANQ--RIMVLPLFDSVRRAGVVVDGL  129 (151)
Q Consensus        92 ~~V~id~~eE~sr~~ky--r~kV~al~dSlR~~GVkv~g~  129 (151)
                      +.|.+|..     ++.|  |++|+++.+..|+.|+++---
T Consensus       100 ~~vvfDrg-----g~~y~~hgRV~Ala~gAre~GL~iPhs  134 (203)
T 3j21_O          100 EEAILDIG-----LHPPVRGSSVFAVLKGAVDAGLNVPHS  134 (203)
T ss_dssp             CCCEEECC-----SSCCCTTSHHHHHHHHHHHHTCCCCCC
T ss_pred             CEEEEecC-----cceeccCcchhhhhhhcccCCeecccC
Confidence            99999986     8888  799999999999999988544

>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.31  E-value=1.5e-11  Score=104.71  Aligned_cols=100  Identities=14%  Similarity=0.149  Sum_probs=85.9

Q ss_pred             CceeeEEEEeeceeEEEeecCCCCC--CceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhc-
Q 031877           13 PRYLLQLILSCRKITAQVSDTASAG--SSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREI-   89 (151)
Q Consensus        13 ~~yvLrL~lS~k~ITAqVv~~~~~~--tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~-   89 (151)
                      ++|=|-.++||+.|.|||++.   .  .+.|+|+|||.|.+ +-.+.         ....|..||..+|..||.|++.. 
T Consensus        47 ~kpRLvVrrSNk~I~aQII~~---~~~gd~tLasAsS~El~-kyg~k---------~g~tN~aAAy~tGlLlArRal~k~  113 (297)
T 2zkr_n           47 PKYRMIVRVTNRDIICQIAYA---RIEGDMIVCARYAHELP-KYGVK---------VGLTNYAAAYCTGLLLARRLLNRF  113 (297)
T ss_dssp             CSEEEEEEEETTEEEEEEEEC---CSSSCEEEEEEEGGGGG-GTCCC---------SCSSSHHHHHHHHHHHHHHHHCCC
T ss_pred             CCceEEEEEecCcEEEEEEec---cCCCCEEEEEeecCccc-ccccc---------cCCCcHHHHHHHHHHHHHHHHHhh
Confidence            377888999999999999997   5  89999999999988 43333         13478999999999999999998 


Q ss_pred             --------------------------CcceeEeechhhccccccc--cchhhHHHHHHHHcCeeeeccc
Q 031877           90 --------------------------GIDNVMINLAEELSRPANQ--RIMVLPLFDSVRRAGVVVDGLE  130 (151)
Q Consensus        90 --------------------------Gi~~V~id~~eE~sr~~ky--r~kV~al~dSlR~~GVkv~g~~  130 (151)
                                                |+..|-+|..     +..|  +++|.++.+..++.|+++---+
T Consensus       114 ~ld~~y~G~~e~~g~~~~ve~~~~~~gi~~vvfDrG-----l~ryttggRVfa~akGArDgGL~~Phs~  177 (297)
T 2zkr_n          114 GMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAG-----LARTTTGNKVFGALKGAVDGGLSIPHST  177 (297)
T ss_dssp             SCCCCCSSCCSSSSCCCCCSSSCSSSCCCBEEEECT-----TSCCCTTCHHHHHHHHHHHTTCBCCCCG
T ss_pred             ccchhhcCccccccccccccccccCCCceEEEEecC-----CcccCCCchHHHHHHHHHhcCcccCCCC
Confidence                                      7888888887     7889  9999999999999999875444

>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E

Probab=99.02  E-value=1.8e-09  Score=92.06  Aligned_cols=104  Identities=17%  Similarity=0.258  Sum_probs=78.9

Q ss_pred             ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhc----
Q 031877           14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREI----   89 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~----   89 (151)
                      +|=|-.+.||+.|.|||++. ....+.|+|+|||.|.+.+. +.         +...|..||..||+.||.|++..    
T Consensus        48 kpRLvV~rSNrhIyAQIIdd-~~~Gd~tLaSASS~El~k~g-~k---------~~~~N~~AAy~vG~LiAeRAl~k~~ld  116 (297)
T 3u5e_D           48 KYRLVVRFTNKDIICQIISS-TITGDVVLAAAYSHELPRYG-IT---------HGLTNWAAAYATGLLIARRTLQKLGLD  116 (297)
T ss_dssp             CCEEEEEEETTEEEEEEEEC-CTTCCEEEEEEEGGGGGGGT-CC---------SCTTSHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             CceEEEEEcCCeEEEEEeec-CCCCCEEEEEEeecchhhcc-cC---------CCCCcHHHHHHHHHHHHHHHHHhhCCc
Confidence            77788899999999999997 11356999999999987432 21         24479999999999999999998    


Q ss_pred             ----CcceeE-----eechhhcccccc---------c--cchhhHHHHHHHHcCeeeec
Q 031877           90 ----GIDNVM-----INLAEELSRPAN---------Q--RIMVLPLFDSVRRAGVVVDG  128 (151)
Q Consensus        90 ----Gi~~V~-----id~~eE~sr~~k---------y--r~kV~al~dSlR~~GVkv~g  128 (151)
                          |+.+|.     ++--++..+||+         +  +.+|.+++......|+.|--
T Consensus       117 ~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVfaalKGA~DgGL~IPh  175 (297)
T 3u5e_D          117 ETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPH  175 (297)
T ss_dssp             SSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHHHHHHHHHHHTCBCCC
T ss_pred             ccccCccccccceeccccccCCCCceeEEEecCCCccCccceehhhhhcccccCcccCC
Confidence                776532     111123345553         3  66999999999999998743

>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M

Probab=99.02  E-value=1.6e-09  Score=92.54  Aligned_cols=105  Identities=15%  Similarity=0.202  Sum_probs=79.5

Q ss_pred             CceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhc---
Q 031877           13 PRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREI---   89 (151)
Q Consensus        13 ~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~---   89 (151)
                      ++|=|-.|.||++|.|||+|. ....+.|+|+|||.|.+.+.. .         +...|..||..||+.||.|++..   
T Consensus        47 pkpRLvV~rSNrhIyAQIIdd-~~~Gd~tLaSASS~El~~~g~-k---------~~~~N~~AAy~vG~LiAeRAl~k~~~  115 (301)
T 4a17_M           47 PKYRLVARATNTRIIAQIVYA-TLKCDRVLCAADSYELKRFGV-S---------TGLASYAAAYATGLLLARRLLKQIGL  115 (301)
T ss_dssp             CCEEEEEEECSSCEEEEEEEE-CSSCEEEEEEEETTHHHHTTC-C---------SCTTSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCceEEEEEcCCeEEEEEeec-CCCCCEEEEEEeeccchhccc-c---------CCCCcHHHHHHHHHHHHHHHHHhcCC
Confidence            377788899999999999996 113559999999999985331 1         24579999999999999999999   


Q ss_pred             -----CcceeE-----eechhhcccccc---------c--cchhhHHHHHHHHcCeeeec
Q 031877           90 -----GIDNVM-----INLAEELSRPAN---------Q--RIMVLPLFDSVRRAGVVVDG  128 (151)
Q Consensus        90 -----Gi~~V~-----id~~eE~sr~~k---------y--r~kV~al~dSlR~~GVkv~g  128 (151)
                           |+.+|.     ++-.++..+||+         +  +.+|.+++......|+.|--
T Consensus       116 d~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVfaalKGA~DgGL~IPh  175 (301)
T 4a17_M          116 DTVYAGQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVFGVLKGACDGGINIPH  175 (301)
T ss_dssp             TTTCCCCSSCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHHHHHHHHHHTTCBCCC
T ss_pred             cccccCccccccceeecccccCCCCceEEEEecCCcccCcccchhhhhhcccccCcccCC
Confidence                 877432     112123355553         3  66999999999999997743

>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...

Probab=96.30  E-value=0.037  Score=41.60  Aligned_cols=99  Identities=8%  Similarity=0.083  Sum_probs=79.4

Q ss_pred             cCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877           12 YPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI   91 (151)
Q Consensus        12 ~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi   91 (151)
                      +..+++-.+.|-.-+-..|+|.    +|.+++.+|+----|+..-+            .-.-||-..+|..+..+++.|+
T Consensus        14 ~~~gi~hI~as~NNTivtiTd~----~G~~~~~~SaG~~gfKg~rk------------~tp~AA~~aa~~~~~~~~~~Gi   77 (129)
T 2vqe_K           14 VASGRAYIHASYNNTIVTITDP----DGNPITWSSGGVIGYKGSRK------------GTPYAAQLAALDAAKKAMAYGM   77 (129)
T ss_dssp             CSEEEEEEEECSSCEEEEEECT----TSCEEEECCTTTTTCCSGGG------------GSHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccceEEEEEecCCCEEEEEEcC----CCCEEEEEeccceeEcCCCc------------CCHHHHHHHHHHHHHHHHHhCC
Confidence            3458899999999999999998    67888888887667887766            6678999999999999999999


Q ss_pred             ceeEeechhhccccccccchhhHHHHHHHHcCeeeecccccc
Q 031877           92 DNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLA  133 (151)
Q Consensus        92 ~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~~l~  133 (151)
                      ..|+|-++    -|=.-|   .+.+.+|...|++|.-.+..-
T Consensus        78 ~~v~V~vk----G~G~Gr---e~airaL~~~Gl~I~~I~DvT  112 (129)
T 2vqe_K           78 QSVDVIVR----GTGAGR---EQAIRALQASGLQVKSIVDDT  112 (129)
T ss_dssp             CEEEEEEE----SCCTTH---HHHHHHHHTSSSEEEECEECC
T ss_pred             eEEEEEEE----CCCCCH---HHHHHHHHHCCCEEEEEEEcC
Confidence            99999987    333222   378999999999876554433

>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=96.17  E-value=0.056  Score=41.26  Aligned_cols=114  Identities=15%  Similarity=0.170  Sum_probs=81.5

Q ss_pred             CCCcccccCcccCceeeEEEEeeceeEEEeecCCCCCCc-eEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHH
Q 031877            1 MSSSTVTNSQKYPRYLLQLILSCRKITAQVSDTASAGSS-TIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVG   79 (151)
Q Consensus         1 ~~~~~~~~~~~~~~yvLrL~lS~k~ITAqVv~~~~~~ts-tIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VG   79 (151)
                      ||-....-.+|-...++-.+.|-.-.-..|+|.    +| .+++-+|.--.-|+..-+            .-.-||-..+
T Consensus         1 ~~~~~~~~~~~~~~gi~hI~asfNNTivtiTD~----~G~~~i~~~S~G~~gfkg~~k------------sTp~AA~~aa   64 (137)
T 3j20_M            1 MSEEQVNIKKKEKWGIAHIYSSFNNTIIHITDI----TGAETISRWSGGMVVKADRDE------------PSPYAAMLAA   64 (137)
T ss_dssp             ----CCCCSSCCEEEEEEEEECSSCEEEEEEES----SSCSEEEEEEGGGTCSCTTTS------------SSHHHHHHHH
T ss_pred             CccchhhhccCCcceEEEEEcCCCCEEEEEEcC----CCCEEEEEEccceeeecCCcc------------CCHHHHHHHH
Confidence            444444444555688898999988888999998    55 588888877777776666            4566888889


Q ss_pred             HHHHHHHHhcCcceeEeechhhccccccccch-----hhHHHHHHHHcCeeeeccccccc
Q 031877           80 QKLGSQLREIGIDNVMINLAEELSRPANQRIM-----VLPLFDSVRRAGVVVDGLEKLAE  134 (151)
Q Consensus        80 e~La~RLk~~Gi~~V~id~~eE~sr~~kyr~k-----V~al~dSlR~~GVkv~g~~~l~~  134 (151)
                      |..+.++++.|+..|+|-++    -|=-+++|     =.+.+.+|.+.|++|.-.+..-.
T Consensus        65 ~~~~~~a~e~Gi~~v~V~vk----G~gg~~~~~pG~GresairaL~~~Gl~I~~I~DvTp  120 (137)
T 3j20_M           65 RRAAEEALEKGIVGVHIRVR----APGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTP  120 (137)
T ss_dssp             HHHHHHHHHHTEEEEEEEEE----CCCSSSCCSCCTHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred             HHHHHHHHHcCCeEEEEEEE----CCCCCCCcCCCCcHHHHHHHHHhCCCEEEEEEEcCC
Confidence            99999999999999999997    32222211     24578889999998875554433

>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=95.76  E-value=0.03  Score=42.87  Aligned_cols=98  Identities=15%  Similarity=0.235  Sum_probs=78.9

Q ss_pred             cCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877           12 YPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI   91 (151)
Q Consensus        12 ~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi   91 (151)
                      +..+++-++.|-.-+-..|+|.    +|.+++.+|+----|+..-+            .-.-||-..+|..+..+++.|+
T Consensus        27 ~~~gi~hI~as~NNTivtiTD~----~G~~i~~~SaG~~GfKg~rk------------sTp~AA~~aa~~~~~~a~e~Gi   90 (140)
T 3bbn_K           27 IPKGVIHVQASFNNTIVTVTDV----RGRVVSWASAGTCGFRGTKR------------GTPFAAQTAAGNAIRTVVEQGM   90 (140)
T ss_dssp             CCCCEEEEEECSSCEEEEEECS----SSCEEEEEETTTSSCCTTSC------------SSHHHHHHHHTSGGGTSTTTCC
T ss_pred             ceeeEEEEEecCCCEEEEEEcC----CCCEEEEEeccceeEccccc------------CCHHHHHHHHHHHHHHHHHhCC
Confidence            4468999999999999999998    67888888876666777755            5678999999999999999999


Q ss_pred             ceeEeechhhccccccccchhhHHHHHHHHcCeeeeccccc
Q 031877           92 DNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKL  132 (151)
Q Consensus        92 ~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~~l  132 (151)
                      ..|+|-++    -|=.-|.   +.+.+|.+.|++|.-.+..
T Consensus        91 ~~v~V~vk----G~G~GRe---aairaL~~~Gl~I~~I~Dv  124 (140)
T 3bbn_K           91 QRAEVMIK----GPGLGRD---AALRAIRRSGILLSFVRDV  124 (140)
T ss_dssp             CEEEEEEE----SCSTTSS---HHHHHHHTTTCEEEEEEEC
T ss_pred             eEEEEEEE----CCCCcHH---HHHHHHHHCCCEEEEEEEc
Confidence            99999987    4433333   7899999999987654443

>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*

Probab=92.92  E-value=0.68  Score=35.83  Aligned_cols=102  Identities=9%  Similarity=0.108  Sum_probs=69.7

Q ss_pred             CceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcc
Q 031877           13 PRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGID   92 (151)
Q Consensus        13 ~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~   92 (151)
                      ...++-++.|-.-+-..|+|.   .-..+++.+|....-+.+.-+            .-.-||-..+|..+.++++.||.
T Consensus        27 ~~gi~hI~asfNNTiVtiTD~---~G~~~~~~ssgg~~~k~~r~k------------sTpyAAq~aa~~~a~~a~e~Gi~   91 (151)
T 2xzm_K           27 VFGVCHIMATWNDTFIHVTDL---SGRETLVRVTGGMKVKADREE------------SSPYAAMQAAIDVVNRCKELKIN   91 (151)
T ss_dssp             CEEEEEEEBCSSCBCCEEECT---TCCSEEEECCHHHHCSSGGGG------------SCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             eeeEEEEEccCCCEEEEEECC---CCCEEEEEecCcceEeCCCCc------------CCHHHHHHHHHHHHHHHHHcCCe
Confidence            357788888888888889998   333355554444433333334            44668888899999999999999


Q ss_pred             eeEeechhhcccccccc-----chhhHHHHHHHHcCeeeecccccc
Q 031877           93 NVMINLAEELSRPANQR-----IMVLPLFDSVRRAGVVVDGLEKLA  133 (151)
Q Consensus        93 ~V~id~~eE~sr~~kyr-----~kV~al~dSlR~~GVkv~g~~~l~  133 (151)
                      .|+|-++    -+=-++     --=.+.+.+|.+.|+++.-.+..-
T Consensus        92 ~v~V~vk----G~gg~~~kgpG~GresairaL~~~GlkI~~I~DvT  133 (151)
T 2xzm_K           92 ALHIKLR----AKGGVETKQPGPGAQSALRALARSGMKIGRIEDVT  133 (151)
T ss_dssp             EEEEEEE----CCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECC
T ss_pred             EEEEEEE----cCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeC
Confidence            9999986    221111     113578899999999876554443

>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*

Probab=90.01  E-value=0.95  Score=34.44  Aligned_cols=105  Identities=11%  Similarity=0.169  Sum_probs=69.9

Q ss_pred             ccCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhc-cccCCCCCCCCcccchhHHHHHHHHHHHHHHhc
Q 031877           11 KYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHY-HSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREI   89 (151)
Q Consensus        11 ~~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~-e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~   89 (151)
                      +....++-.+.|-.-.-..|+|.    +|..+..+||--.-|+..- +            .-.-||-..+|..+.++++.
T Consensus        11 ~~~~gi~hI~asfNNTivtvTD~----~G~~~~~~ssG~~gfKg~r~k------------sTpyAAq~aa~~~a~~a~e~   74 (137)
T 3u5c_O           11 SQVFGVARIYASFNDTFVHVTDL----SGKETIARVTGGMKVKADRDE------------SSPYAAMLAAQDVAAKCKEV   74 (137)
T ss_dssp             CCCEEECCEEEETTEEEECCEET----TSSSCCCCCBTTTTSCCSTTT------------TCHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeEEEEEEccCCCEEEEEEcC----CCCEEEEEeCCCcEEeCCccc------------CCHHHHHHHHHHHHHHHHHc
Confidence            34566777788888888889998    5555555555444565544 3            34568888899999999999


Q ss_pred             CcceeEeechh--hc-cccccccchhhHHHHHHHHcCeeeecccccc
Q 031877           90 GIDNVMINLAE--EL-SRPANQRIMVLPLFDSVRRAGVVVDGLEKLA  133 (151)
Q Consensus        90 Gi~~V~id~~e--E~-sr~~kyr~kV~al~dSlR~~GVkv~g~~~l~  133 (151)
                      |+..|+|-+.-  .- .++.-.  -=.+.+.+|.+.|+++.-.+..-
T Consensus        75 Gi~~v~V~vra~gg~~~kgpG~--Gr~sairaL~~~Gl~I~~I~DvT  119 (137)
T 3u5c_O           75 GITAVHVKIRATGGTRTKTPGP--GGQAALRALARSGLRIGRIEDVT  119 (137)
T ss_dssp             TCCEEECEEECSCTTSCCSCCG--GGHHHHHHHHTTTCEECCCEECC
T ss_pred             CCeEEEEEEeccCCCcccCCCc--chHHHHHHHHhCCCEEEEEEEcC
Confidence            99999998830  00 012111  12457888899999886555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d2gycm1	113	Ribosomal protein L18 (L18p) {Escherichia coli [Ta	99.84
d1ovya_	97	Ribosomal protein L18 (L18p) {Bacillus stearotherm	99.81
d2j01s1	86	Ribosomal protein L18 (L18p) {Thermus thermophilus	99.69
d2zjrl1	104	Ribosomal protein L18 (L18p) {Deinococcus radiodur	99.67
d1vqon1	186	Ribosomal protein L18 (L18p) {Archaeon Haloarcula	99.58
d2uubk1	119	Ribosomal protein S11 {Thermus thermophilus [TaxId	96.47
d2qalk1	117	Ribosomal protein S11 {Escherichia coli [TaxId: 56	95.32
d1ozha2	181	Catabolic acetolactate synthase {Klebsiella pneumo	83.86
d1pvda2	180	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	80.92

>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.3e-21  Score=143.72  Aligned_cols=93  Identities=23%  Similarity=0.237  Sum_probs=87.8

Q ss_pred             ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877           14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN   93 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~   93 (151)
                      ++=|.+|.||++|+|||+|.   .++.++++|||.|++|+..+.          ..+|..||..||+.||+|+++.||+.
T Consensus        21 ~pRL~V~rSnkhiyaQiIdd---~~~~tl~saST~~k~~~~~~~----------~~~n~~aA~~vG~~la~ra~~~gI~~   87 (113)
T d2gycm1          21 ATRLVVHRTPRHIYAQVIAP---NGSEVLVAASTVEKAIAEQLK----------YTGNKDAAAAVGKAVAERALEKGIKD   87 (113)
T ss_dssp             CCCCBEEECSSCEEEEEEET---TTTEEEEEEETTGGGGTSCCS----------CSSSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCeEEEEEeCCcEEEEEEEc---cCCcEEEEeeehhhhhhhhcC----------CCcchHHHHHHHHHHHHHHHHCCCCE
Confidence            45789999999999999999   999999999999999999887          66899999999999999999999999


Q ss_pred             eEeechhhccccccccchhhHHHHHHHHcCe
Q 031877           94 VMINLAEELSRPANQRIMVLPLFDSVRRAGV  124 (151)
Q Consensus        94 V~id~~eE~sr~~kyr~kV~al~dSlR~~GV  124 (151)
                      |.+|-.     |.+||++|++|.|++|++|+
T Consensus        88 vvfDR~-----g~~YhGrVka~ad~aRe~Gl  113 (113)
T d2gycm1          88 VSFDRS-----GFQYHGRVQALADAAREAGL  113 (113)
T ss_dssp             CCCBCC-----SCCSSSHHHHHHHHHHHHTC
T ss_pred             EEECCC-----CCccchHHHHHHHHHHHcCC
Confidence            999965     99999999999999999996

>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.81  E-value=1.4e-20  Score=134.42  Aligned_cols=92  Identities=25%  Similarity=0.237  Sum_probs=84.2

Q ss_pred             ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877           14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN   93 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~   93 (151)
                      +.-|.+|.|||+|+|||+|+   .++.+++++||.|+++...            ..+|.+||..||+.||+|+++.||+.
T Consensus         5 rpRL~V~kSnkhiyaQlIdd---~~~~tl~s~St~~k~~~~~------------~~~n~~aA~~vG~~~a~kak~~gi~~   69 (97)
T d1ovya_           5 RPRLSVFRSNKHIYAQIIDD---TKSATIVSASTLDKEFGLD------------STNNIEAAKKVGELVAKRALEKGIKQ   69 (97)
T ss_dssp             CCSEEEEEETTEEEEEEECC---SSCCCEEEESTTSTTTCSS------------CTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCEEEEEEeCCeEEEEEEEc---CCCeEEEEecchhhhhccc------------ccCcHHHHHHHHHHHHHHHHHcCCCE
Confidence            34689999999999999999   9999999999999998532            23799999999999999999999999


Q ss_pred             eEeechhhccccccccchhhHHHHHHHHcCee
Q 031877           94 VMINLAEELSRPANQRIMVLPLFDSVRRAGVV  125 (151)
Q Consensus        94 V~id~~eE~sr~~kyr~kV~al~dSlR~~GVk  125 (151)
                      |.+|..     +++||++|+++.|++|++|++
T Consensus        70 vvfDr~-----g~~yhGrvka~a~~~R~~Gl~   96 (97)
T d1ovya_          70 VVFDRG-----GYLYHGRVKALADAAREAGLE   96 (97)
T ss_dssp             CCCCST-----TCSSCSSTHHHHHHHHHHHCC
T ss_pred             EEEcCC-----CCcchHHHHHHHHHHHHhCCC
Confidence            999966     899999999999999999986

>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=1.3e-18  Score=122.82  Aligned_cols=85  Identities=24%  Similarity=0.261  Sum_probs=77.7

Q ss_pred             ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877           14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN   93 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~   93 (151)
                      |+=|.+|.|||+|+||++|.   ..+.+++++||.|++++.               .+.++|..||+.||.++++.||+.
T Consensus         1 R~RL~V~rSnk~iyaQiIDd---~~~~tl~s~St~~k~~k~---------------~~~~~A~~vG~~la~~ak~~gI~~   62 (86)
T d2j01s1           1 RLRLSVFRSLKHIYAQIIDD---EKGVTLVSASSLALKLKG---------------NKTEVARQVGRALAEKALALGIKQ   62 (86)
T ss_dssp             SCEEECCBCSSCBCEEEEET---TTTEEEEEECSTTTCCCS---------------CHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CcEEEEEEcCCeEEEEEEEc---CCCeEEEEEeccchhhcC---------------CCHHHHHHHHHHHHHHHHHCCCCE
Confidence            45688999999999999999   999999999999997641               578999999999999999999999


Q ss_pred             eEeechhhccccccccchhhHHHHHHHH
Q 031877           94 VMINLAEELSRPANQRIMVLPLFDSVRR  121 (151)
Q Consensus        94 V~id~~eE~sr~~kyr~kV~al~dSlR~  121 (151)
                      |.+|-.     |.+||++|+++-|++|+
T Consensus        63 v~FDR~-----g~~YHGrvka~Ad~~Re   85 (86)
T d2j01s1          63 VAFDRG-----PYKYHGRVKALAEGARE   85 (86)
T ss_dssp             CBCCCS-----TTCSSSSCCCCSSCTTC
T ss_pred             EEEeCC-----CCccccHHHHHHHHHhC
Confidence            999965     99999999999998875

>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.67  E-value=8.1e-18  Score=121.59  Aligned_cols=86  Identities=28%  Similarity=0.309  Sum_probs=78.6

Q ss_pred             ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877           14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN   93 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~   93 (151)
                      ++=|-+|.||++|+|||+|.   .++.++++|||.|.+                ...+.++|..||++||+++++.||+.
T Consensus        19 rpRL~V~rSnkhiyaQiIDd---~~~~tl~s~St~~~~----------------~~~~~~~a~~vG~~ia~~a~~kgi~~   79 (104)
T d2zjrl1          19 RLRLSVYRSSKHIYAQIIDD---SRGQTLAAASSAALK----------------SGNKTDTAAAVGKALAAAAAEKGIKQ   79 (104)
T ss_dssp             SEEECCCTTSSCCCCCEEET---TTTEECCCCCSCSCC----------------TTCSSSSHHHHHHHHHHHHHTTCCCC
T ss_pred             CcEEEEEEccCeeEEEEEec---CCCeEEEeecccccc----------------ccchhhHHHHHHHHHHHHHHHCCCCE
Confidence            46788999999999999999   999999999998643                23578899999999999999999999


Q ss_pred             eEeechhhccccccccchhhHHHHHHHHcC
Q 031877           94 VMINLAEELSRPANQRIMVLPLFDSVRRAG  123 (151)
Q Consensus        94 V~id~~eE~sr~~kyr~kV~al~dSlR~~G  123 (151)
                      |.+|-.     ++.||++|++|-|++|++|
T Consensus        80 v~FDR~-----g~~YHGrvka~ad~~R~~G  104 (104)
T d2zjrl1          80 VVFDRG-----SYKYHGRVKALADAAREGG  104 (104)
T ss_dssp             CEECCC-----SSCSCSHHHHHHHHHHHHC
T ss_pred             EEECCC-----CCcchhHHHHHHHHHHhCC
Confidence            999975     9999999999999999998

>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.58  E-value=4.3e-15  Score=116.79  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=87.4

Q ss_pred             ceeeEEEEeeceeEEEee--cCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCc
Q 031877           14 RYLLQLILSCRKITAQVS--DTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGI   91 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv--~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi   91 (151)
                      ++=|-.++||++|+|||+  |.   ..+.|+|+|||.|.+.+....          ...|.+||..+|+.+|.|++..||
T Consensus        31 kpRLvVrrSNk~IyaQII~~d~---~gd~vlaSAsS~el~k~g~k~----------~~~N~~AAy~~G~liA~ra~~~gi   97 (186)
T d1vqon1          31 KPRLVARKSNKHVRAQLVTLGP---NGDDTLASAHSSDLAEYGWEA----------PTGNMPSAYLTGLLAGLRAQEAGV   97 (186)
T ss_dssp             SCEEEEEECSSCEEEEEEECCT---TSCEEEEEEESGGGGGGSCCS----------CSSSHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEeCCceEEEEEEecC---CCCEEEEEEecchhhhhcccc----------CccHHHHHHHhHHHHHHHHHhhcc
Confidence            456888999999999999  55   788999999999988765443          567999999999999999999999


Q ss_pred             ceeEeechhhccccccccchhhHHHHHHHHcCeeeeccc
Q 031877           92 DNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLE  130 (151)
Q Consensus        92 ~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~  130 (151)
                      ..|.+|.-   -.+..||++|.|+.++.+++|++|=--|
T Consensus        98 ~~vvfD~G---~~~~~yhgRV~A~akgard~GL~Iph~~  133 (186)
T d1vqon1          98 EEAVLDIG---LNSPTPGSKVFAIQEGAIDAGLDIPHND  133 (186)
T ss_dssp             CBCEEECT---TSCCCTTCHHHHHHHHHHHTTCBCCCCG
T ss_pred             cceEEeeC---CCCCCccchHHHHHHHHHhcCccCCCCC
Confidence            99999954   1389999999999999999999985443

>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Thermus thermophilus [TaxId: 274]

Probab=96.47  E-value=0.016  Score=40.87  Aligned_cols=106  Identities=9%  Similarity=0.100  Sum_probs=79.2

Q ss_pred             ccCceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcC
Q 031877           11 KYPRYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIG   90 (151)
Q Consensus        11 ~~~~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~G   90 (151)
                      +....++-...|..-+-..++|+    +|.+++.+|+-=-.|+..-+            .-.-||..+++.+++.+++.|
T Consensus         3 ~~~~GivhI~~t~NNT~itlTD~----~Gn~i~~~S~G~~gfkg~rk------------~t~~Aa~~~a~~~~~k~~~~g   66 (119)
T d2uubk1           3 QVASGRAYIHASYNNTIVTITDP----DGNPITWSSGGVIGYKGSRK------------GTPYAAQLAALDAAKKAMAYG   66 (119)
T ss_dssp             CCSEEEEEEEECSSCEEEEEECT----TSCEEEEEETTTSSCCSGGG------------GSHHHHHHHHHHHHHHHHTTT
T ss_pred             cccccEEEEEeccCCEEEEEECC----CCCEEEEEecccceeccccc------------cchhHHHHHHHHHHHHHHHcC
Confidence            45566777778888888889998    56777777765445666655            567789999999999999999


Q ss_pred             cceeEeechhhccccccccchhhHHHHHHHHcCeeeecccccccccccceecccccC
Q 031877           91 IDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLEKLAEDRVGRRLGFCHNG  147 (151)
Q Consensus        91 i~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~~l~~~~~~~~~~~~~~~  147 (151)
                      +..|+|-++     |+-.-.  .+++..|.+.|+++.-..        ..-...|||
T Consensus        67 ~~~v~v~~k-----G~G~gR--~~~ik~l~~~g~kI~~I~--------D~T~iphnG  108 (119)
T d2uubk1          67 MQSVDVIVR-----GTGAGR--EQAIRALQASGLQVKSIV--------DDTPVPHNG  108 (119)
T ss_dssp             CCEEEEEEE-----CCCTTH--HHHHHHHHTSSSEEEECE--------ECCCCCSSC
T ss_pred             CcEEEEEEE-----cCCCCh--HHHHHHHHHCCCEEEEEE--------ECCCCCCCC
Confidence            999999886     443322  478889999999987443        233456776

>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.072  Score=37.32  Aligned_cols=94  Identities=12%  Similarity=0.186  Sum_probs=72.3

Q ss_pred             ceeeEEEEeeceeEEEeecCCCCCCceEEEeeccchhhhhhhccccCCCCCCCCcccchhHHHHHHHHHHHHHHhcCcce
Q 031877           14 RYLLQLILSCRKITAQVSDTASAGSSTIVALASSSKQDFYSHYHSKLNPFPKRHRFWDSNTVVVVGQKLGSQLREIGIDN   93 (151)
Q Consensus        14 ~yvLrL~lS~k~ITAqVv~~~~~~tstIVA~ASS~Eq~~r~~~e~~l~~~~rs~~~~DakaAa~VGe~La~RLk~~Gi~~   93 (151)
                      .-++-.+.|-.-+-..++|.    +|.+++.+|+-=.-|+..-+            .-.-||..+++.++..+++.|+..
T Consensus         6 ~Gi~hI~~t~NNTiitlTD~----~G~~~~~~S~G~~gfkg~~K------------~t~~Aa~~~a~~~~~~~~~~gi~~   69 (117)
T d2qalk1           6 DGVAHIHASFNNTIVTITDR----QGNALGWATAGGSGFRGSRK------------STPFAAQVAAERCADAVKEYGIKN   69 (117)
T ss_dssp             EEEEEEECCSSCCEEEEEET----TSCEEEEEETTTSSCCHHHH------------TSHHHHHHHHHHHHHHHGGGTCCE
T ss_pred             ceEEEEEecCCCEEEEEECC----CCCEEEEEeccccccccccc------------cchHHHHHHHHHHHHHHHHcCCcE
Confidence            45666677777777788998    56777777776666777777            456789999999999999999999


Q ss_pred             eEeechhhccccccccchhhHHHHHHHHcCeeeeccc
Q 031877           94 VMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGLE  130 (151)
Q Consensus        94 V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~~  130 (151)
                      |++-++     |+-.-.  .+.+..|+..|+++.-..
T Consensus        70 v~V~~k-----G~G~GR--~~air~l~~~gl~I~~I~   99 (117)
T d2qalk1          70 LEVMVK-----GPGPGR--ESTIRALNAAGFRITNIT   99 (117)
T ss_dssp             EEEEEE-----CCSTTT--THHHHHHHHTTCEEEEEE
T ss_pred             EEEEEe-----CCCCch--HHHHHHHHhCCCEEEEEE
Confidence            999986     443322  378999999999876543

>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.86  E-value=0.57  Score=33.47  Aligned_cols=41  Identities=20%  Similarity=0.202  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHHcCeeeecc
Q 031877           79 GQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRRAGVVVDGL  129 (151)
Q Consensus        79 Ge~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~~GVkv~g~  129 (151)
                      |+.|+..|+..||+.|-...-          .-+.+|+|++++.||+++..
T Consensus         8 ~d~l~~~L~~~Gv~~vFg~pG----------~~~~~l~~al~~~~i~~i~~   48 (181)
T d1ozha2           8 ADLVVSQLEAQGVRQVFGIPG----------AKIDKVFDSLLDSSIRIIPV   48 (181)
T ss_dssp             HHHHHHHHHHHTCCEEEEECC----------TTTHHHHHHGGGSSSEEEEC
T ss_pred             HHHHHHHHHHCCCCEEEEeCc----------HhHHHHHHHHHhhhcccccc
Confidence            689999999999998877664          45789999999999999876

>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.92  E-value=0.81  Score=32.13  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhcCcceeEeechhhccccccccchhhHHHHHHHH-cCeeeecc
Q 031877           78 VGQKLGSQLREIGIDNVMINLAEELSRPANQRIMVLPLFDSVRR-AGVVVDGL  129 (151)
Q Consensus        78 VGe~La~RLk~~Gi~~V~id~~eE~sr~~kyr~kV~al~dSlR~-~GVkv~g~  129 (151)
                      +||.|++.|++.||+.|.--.-          .-+.+|+|++.+ .||+++..
T Consensus         5 ~~~~i~~~L~~~Gv~~vFgipG----------~~~~~l~~al~~~~~i~~i~~   47 (180)
T d1pvda2           5 LGKYLFERLKQVNVNTVFGLPG----------DFNLSLLDKIYEVEGMRWAGN   47 (180)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCC----------TTTHHHHHGGGGSTTCEECCC
T ss_pred             HHHHHHHHHHHCCCCEEEEeCC----------ccHHHHHHHHHHhcceEEeee
Confidence            7999999999999999876553          457899999955 48988764