Citrus Sinensis ID: 031890

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MDSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccEEEEEEEEccccEEEEEEcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccEEEEEEcccccEEEEEEcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MDSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLgsevymqadvpdtqhiFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEllqlpaetsvQEAIF
Flexible Loop (DISEMBL)
mdsyrqekvqkfeefvdrrlkpdltraiaerdkvfeqqkiFSDLRknienleknsvtSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELlqlpaetsvqeaif
Low Complexity Region (SEG)
MDSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF
Disordered region (IsUnstruct)
************************TRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLP**********
Disordered Region (DISOPRED)
******E***KFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKN*****************LGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEY********AQIKLVCE*******************
Disordered Region (DISEMBL)
********VQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE********
Disordered Region (DISPRO)
*DSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLP*E********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKxxxxxxxxxxxxxxxxxxxxxSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEAIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q54ND3	161	Protein UXT homolog OS=Di	yes	no	0.900	0.844	0.404	6e-26
A7T0W1	159	Protein UXT homolog OS=Ne	N/A	no	0.874	0.830	0.395	2e-21
Q9WTZ0	157	Protein UXT OS=Mus muscul	yes	no	0.867	0.834	0.381	1e-19
Q63ZY7	157	Protein UXT OS=Rattus nor	yes	no	0.867	0.834	0.381	2e-19
Q32P97	156	Protein UXT OS=Bos taurus	yes	no	0.867	0.839	0.381	1e-18
Q9UBK9	157	Protein UXT OS=Homo sapie	yes	no	0.867	0.834	0.374	7e-18
O28216	137	Prefoldin subunit alpha O	yes	no	0.562	0.620	0.333	3e-06
Q12ZJ7	138	Prefoldin subunit alpha O	yes	no	0.569	0.623	0.261	0.0001
Q8HYI9	154	Prefoldin subunit 5 OS=Bo	no	no	0.556	0.545	0.281	0.0004

>sp|Q54ND3|UXT_DICDI Protein UXT homolog OS=Dictyostelium discoideum GN=DDB_G0285389 PE=3 SV=1

 Score =  116 bits (290), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 93/136 (68%)

Query: 5   RQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVN 64
           R + ++ +E F++  L  DL ++I +R+KV E  + + +L+ NIE L +N + S++T++N
Sbjct: 25  RLDSIKYYETFINETLNVDLNKSIEDREKVLENLENYLELKSNIELLIENKMDSMKTMIN 84

Query: 65  LGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIK 124
           LGSE Y++A V DT +I+VDIGLG HV++T  EA+KFI+++E  + + ++  T+ I  IK
Sbjct: 85  LGSECYVKARVQDTSYIYVDIGLGIHVKYTLEEAIKFINEKETFLNKTVENQTKKINQIK 144

Query: 125 AQIKLVCEGICELLQL 140
            +I L+  G+ EL  L
Sbjct: 145 TKIDLIQNGLKELKHL 160

Dictyostelium discoideum (taxid: 44689)

>sp|A7T0W1|UXT_NEMVE Protein UXT homolog OS=Nematostella vectensis GN=v1g140887 PE=3 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 82/134 (61%), Gaps = 2/134 (1%)

Query: 6   QEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTS--LRTLV 63
           QEK++K+EEF+D+RL  DL      +D++  +   ++ L+ +IE ++K  +    LR+ V
Sbjct: 12  QEKIRKYEEFLDQRLAKDLEAVFKSQDEIVAKITEYTQLKSSIEQIQKTDLKGKDLRSRV 71

Query: 64  NLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASI 123
           +LG   + QA VPD   IF+ +G GF VEFT SEAL FI ++   +   +D+  +  A I
Sbjct: 72  DLGCNFFCQASVPDPSRIFIAVGYGFFVEFTLSEALNFIEKKLAHLQHSVDKLGKDAAKI 131

Query: 124 KAQIKLVCEGICEL 137
           KA +KLV  G+ EL
Sbjct: 132 KAHMKLVLGGLQEL 145

Nematostella vectensis (taxid: 45351)

>sp|Q9WTZ0|UXT_MOUSE Protein UXT OS=Mus musculus GN=Uxt PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 78/131 (59%)

Query: 7   EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
           EKV ++E F+   L+ DL + +  RDKV+EQ  ++  LR  IE L++ + + L   V+LG
Sbjct: 15  EKVLRYETFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYMQVDLG 74

Query: 67  SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
              ++   VPDT  I+V +G GF +E T +EALKFI ++   +    D  T+   +IKA 
Sbjct: 75  CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNIKAH 134

Query: 127 IKLVCEGICEL 137
           I ++ EG+ EL
Sbjct: 135 IHMMLEGLREL 145

Involved in gene transcription regulation. Acts in concert with the corepressor URI1 to regulate androgen receptor (AR) transcription. AR N-terminus-associated coactivator which may play a role in facilitating receptor-induced transcriptional activation. Potential component of mitochondrial-associated LRPPRC, a multidomain organizer that potentially integrates mitochondria and the microtubular cytoskeleton with chromosome remodeling. Increasing concentrations of UXT contributes to progressive aggregation of mitochondria and cell death potentially through its association with LRPPRC. May be a nuclear chaperone that promotes formation of the NF-kappa-B enhanceosome and which is essential for its nuclear function. Suppresses cell transformation and it might mediate this function by interaction and inhibition of the biological activity of cell proliferation and survival stimulatory factors like MECOM. Together with URI1, associates with chromatin to the NKX3-1 promoter region.

Mus musculus (taxid: 10090)

>sp|Q63ZY7|UXT_RAT Protein UXT OS=Rattus norvegicus GN=Uxt PE=2 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 78/131 (59%)

Query: 7   EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
           EKV ++E F+   L+ DL + +  RDKV+EQ  ++  LR  IE L++ + + L   V+LG
Sbjct: 15  EKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYMQVDLG 74

Query: 67  SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
              ++   VPDT  I+V +G GF +E T +EALKFI ++   +    D  T+   +IKA 
Sbjct: 75  CNFFVDTMVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNIKAN 134

Query: 127 IKLVCEGICEL 137
           I ++ EG+ EL
Sbjct: 135 IHMMLEGLREL 145

Involved in gene transcription regulation. Acts in concert with the corepressor URI1 to regulate androgen receptor (AR) transcription. AR N-terminus-associated coactivator which may play a role in facilitating receptor-induced transcriptional activation. Potential component of mitochondrial-associated LRPPRC, a multidomain organizer that potentially integrates mitochondria and the microtubular cytoskeleton with chromosome remodeling. Increasing concentrations of UXT contributes to progressive aggregation of mitochondria and cell death potentially through its association with LRPPRC. May be a nuclear chaperone that promotes formation of the NF-kappa-B enhanceosome and which is essential for its nuclear function. Suppresses cell transformation and it might mediate this function by interaction and inhibition of the biological activity of cell proliferation and survival stimulatory factors like MECOM. Together with URI1, associates with chromatin to the NKX3-1 promoter region.

Rattus norvegicus (taxid: 10116)

>sp|Q32P97|UXT_BOVIN Protein UXT OS=Bos taurus GN=UXT PE=2 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 77/131 (58%)

Query: 7   EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
           EKV ++E F+   L+ DL + +  RDKV+EQ   +  LR  IE L++ + + L   V+LG
Sbjct: 15  EKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLAKYLQLRNVIERLQEANHSELYMQVDLG 74

Query: 67  SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
              ++   VPDT  I+V +G GF +E T +EALKFI ++   +    D  T+   +IKA 
Sbjct: 75  CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDNLTKDSMNIKAH 134

Query: 127 IKLVCEGICEL 137
           I ++ EG+ EL
Sbjct: 135 IHMLLEGLREL 145

Involved in gene transcription regulation. Acts in concert with the corepressor URI1 to regulate androgen receptor (AR) transcription. AR N-terminus-associated coactivator which may play a role in facilitating receptor-induced transcriptional activation. Potential component of mitochondrial-associated LRPPRC, a multidomain organizer that potentially integrates mitochondria and the microtubular cytoskeleton with chromosome remodeling. Increasing concentrations of UXT contributes to progressive aggregation of mitochondria and cell death potentially through its association with LRPPRC. May be a nuclear chaperone that promotes formation of the NF-kappa-B enhanceosome and which is essential for its nuclear function. Suppresses cell transformation and it might mediate this function by interaction and inhibition of the biological activity of cell proliferation and survival stimulatory factors like MECOM. Together with URI1, associates with chromatin to the NKX3-1 promoter region.

Bos taurus (taxid: 9913)

>sp|Q9UBK9|UXT_HUMAN Protein UXT OS=Homo sapiens GN=UXT PE=1 SV=1

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 76/131 (58%)

Query: 7   EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
           EKV ++E F+   L+ DL + +  RDKV+EQ   +  LR  IE L++   + L   V+LG
Sbjct: 15  EKVLRYETFISDVLQRDLRKVLDHRDKVYEQLAKYLQLRNVIERLQEAKHSELYMQVDLG 74

Query: 67  SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
              ++   VPDT  I+V +G GF +E T +EALKFI ++   +    +  T+   +IKA 
Sbjct: 75  CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSNSLTKDSMNIKAH 134

Query: 127 IKLVCEGICEL 137
           I ++ EG+ EL
Sbjct: 135 IHMLLEGLREL 145

Involved in gene transcription regulation. Acts in concert with the corepressor URI1 to regulate androgen receptor transcription (AR). AR N-terminus-associated coactivator which may play a role in facilitating receptor-induced transcriptional activation (PubMed:11854421). Potential component of mitochondrial-associated LRPPRC, a multidomain organizer that potentially integrates mitochondria and the microtubular cytoskeleton with chromosome remodeling (PubMed:11827465). Increasing concentrations of UXT contributes to progressive aggregation of mitochondria and cell death potentially through its association with LRPPRC (PubMed:17554592). May be a nuclear chaperone that promotes formation of the NF-kappa-B enhanceosome and which is essential for its nuclear function (PubMed:17620405). Suppresses cell transformation and it might mediate this function by interaction and inhibition of the biological activity of cell proliferation and survival stimulatory factors like MECOM (PubMed:17635584). Together with URI1, associates with chromatin to the NKX3-1 promoter region.

Homo sapiens (taxid: 9606)

>sp|O28216|PFDA_ARCFU Prefoldin subunit alpha OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=pfdA PE=3 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 42  SDLRKNIENLE--KNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEAL 99
           ++ RK +E LE  ++  TS+  L+NLG  V+   DV +++ + VDIG G  VE    EA+
Sbjct: 36  NEYRKTLETLEFFESIDTSVEALMNLGGGVFAYVDVKNSKKMLVDIGSGVVVEREVGEAI 95

Query: 100 KFISQREDKIARQIDEYTRLIASIKAQ 126
           +F+  R  KI    ++ T ++  + +Q
Sbjct: 96  EFVKNRIKKIEENQEKMTSMLQQVLSQ 122

Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|Q12ZJ7|PFDA_METBU Prefoldin subunit alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=pfdA PE=3 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 2/88 (2%)

Query: 38  QKIFSDLRKNIENLE--KNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTW 95
           Q    D  + I  LE  K++  ++ T++ LG+   + A++ D   I V +G G  VE T 
Sbjct: 34  QMSIEDCTRAILTLEELKSASGAINTMIPLGAGALIHANIADVDKIVVSVGAGISVEKTP 93

Query: 96  SEALKFISQREDKIARQIDEYTRLIASI 123
           +EA++ ++QR++++ + ++     +  I
Sbjct: 94  TEAIETLTQRKEELGKVVERLNGTLTQI 121

Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

>sp|Q8HYI9|PFD5_BOVIN Prefoldin subunit 5 OS=Bos taurus GN=PFDN5 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 12/96 (12%)

Query: 24  LTRAIAE----RDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQ 79
           L+ +IA+    + K  E +   + L+KN E  E         LV L S +Y+   + D +
Sbjct: 29  LSTSIAQLKVVQTKYVEAKDCLNVLKKNNEGKE--------LLVPLTSSMYVPGKLHDVE 80

Query: 80  HIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDE 115
           H+ +D+G G++VE T  +A  F  ++ D + +Q+++
Sbjct: 81  HVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEK 116

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
351722823	151	uncharacterized protein LOC100499907 [Gl	1.0	1.0	0.841	7e-69
255562972	210	protein binding protein, putative [Ricin	0.966	0.695	0.856	5e-68
449491762	155	PREDICTED: protein UXT homolog [Cucumis	0.993	0.967	0.813	1e-66
449448012	155	PREDICTED: protein UXT homolog [Cucumis	0.993	0.967	0.806	2e-66
224101403	151	predicted protein [Populus trichocarpa]	1.0	1.0	0.814	4e-66
217072430	151	unknown [Medicago truncatula] gi|3884973	1.0	1.0	0.788	1e-64
225435696	144	PREDICTED: protein UXT homolog [Vitis vi	0.947	0.993	0.818	1e-62
357487263	407	UXT-like protein [Medicago truncatula] g	0.960	0.356	0.793	1e-61
238007324	156	unknown [Zea mays] gi|238014124|gb|ACR38	0.920	0.891	0.812	3e-61
242046178	156	hypothetical protein SORBIDRAFT_02g03824	0.920	0.891	0.812	4e-61

>gi|351722823|ref|NP_001237769.1| uncharacterized protein LOC100499907 [Glycine max] gi|255627579|gb|ACU14134.1| unknown [Glycine max]

 Score =  264 bits (675), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 127/151 (84%), Positives = 141/151 (93%)

Query: 1   MDSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLR 60
           MDS RQEKVQ+FEEFVD+RLKPDL  AIA+RDKVFEQQKIF+DLRKNIENLEKNSVTSLR
Sbjct: 1   MDSLRQEKVQRFEEFVDKRLKPDLVHAIAQRDKVFEQQKIFTDLRKNIENLEKNSVTSLR 60

Query: 61  TLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLI 120
           TLVN+GSEVY+QA+VPDTQHIFVD+G GFHVEFTWSEAL +I +RE+KIARQI+EYT+LI
Sbjct: 61  TLVNIGSEVYLQAEVPDTQHIFVDVGFGFHVEFTWSEALNYIDKREEKIARQIEEYTQLI 120

Query: 121 ASIKAQIKLVCEGICELLQLPAETSVQEAIF 151
           ASIKAQIKLVCEGI ELLQLPAE S+ E IF
Sbjct: 121 ASIKAQIKLVCEGIRELLQLPAEKSLPERIF 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562972|ref|XP_002522491.1| protein binding protein, putative [Ricinus communis] gi|223538376|gb|EEF39983.1| protein binding protein, putative [Ricinus communis]

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 125/146 (85%), Positives = 138/146 (94%)

Query: 1   MDSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLR 60
           M+SYRQ+K+QKFEEFVDRRLKPDL RAIA+RDKVFE+QK+FSDLR+NIENLE NSVTSLR
Sbjct: 1   MESYRQDKIQKFEEFVDRRLKPDLVRAIAQRDKVFEEQKVFSDLRRNIENLENNSVTSLR 60

Query: 61  TLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLI 120
           TLVNLGSEVYMQADVPDTQ +FVDIGLGFHVEFTW+EAL +IS RE+KIARQI+EYTR I
Sbjct: 61  TLVNLGSEVYMQADVPDTQRVFVDIGLGFHVEFTWAEALNYISLREEKIARQIEEYTRQI 120

Query: 121 ASIKAQIKLVCEGICELLQLPAETSV 146
           ASIKAQIKLVCEGI ELLQLPAE S+
Sbjct: 121 ASIKAQIKLVCEGIRELLQLPAEKSL 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491762|ref|XP_004158996.1| PREDICTED: protein UXT homolog [Cucumis sativus]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/150 (81%), Positives = 140/150 (93%)

Query: 2   DSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRT 61
           D++R EKVQ+FEEFVDRRLKPDL  AIAERDKVFEQQK+FSDLR+NIENLEKNS+T+LRT
Sbjct: 6   DNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSITNLRT 65

Query: 62  LVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIA 121
           LVNLGSEVY+Q DVPDT+ IFVDIGLGFHVEFTWSEALKFIS +E+++ RQI+EYT+LIA
Sbjct: 66  LVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEYTQLIA 125

Query: 122 SIKAQIKLVCEGICELLQLPAETSVQEAIF 151
           SIKAQIKLVCEGI ELLQLPAE +V+E +F
Sbjct: 126 SIKAQIKLVCEGIRELLQLPAERTVEERVF 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448012|ref|XP_004141760.1| PREDICTED: protein UXT homolog [Cucumis sativus]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/150 (80%), Positives = 140/150 (93%)

Query: 2   DSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRT 61
           D++R EKVQ+FEEFVDRRLKPDL  AIAERDKVFEQQK+FSDLR+NIENLEKNS+T++RT
Sbjct: 6   DNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSITNVRT 65

Query: 62  LVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIA 121
           LVNLGSEVY+Q DVPDT+ IFVDIGLGFHVEFTWSEALKFIS +E+++ RQI+EYT+LIA
Sbjct: 66  LVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEYTQLIA 125

Query: 122 SIKAQIKLVCEGICELLQLPAETSVQEAIF 151
           SIKAQIKLVCEGI ELLQLPAE +V+E +F
Sbjct: 126 SIKAQIKLVCEGIRELLQLPAERTVEERVF 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101403|ref|XP_002312264.1| predicted protein [Populus trichocarpa] gi|118482164|gb|ABK93012.1| unknown [Populus trichocarpa] gi|222852084|gb|EEE89631.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/151 (81%), Positives = 138/151 (91%)

Query: 1   MDSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLR 60
           MDSY QEK+ KFEEFVD  LKP L RAIAERDKVFEQQKIFSDLR++IENLEKNSVT+LR
Sbjct: 1   MDSYIQEKIHKFEEFVDGHLKPQLVRAIAERDKVFEQQKIFSDLRRSIENLEKNSVTNLR 60

Query: 61  TLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLI 120
           T+VNLGSEVYMQADVPDTQ IFVD+GLGFHVEFTW+EAL FI+ RE+KIARQI+EYTRLI
Sbjct: 61  TMVNLGSEVYMQADVPDTQRIFVDVGLGFHVEFTWTEALNFIALREEKIARQIEEYTRLI 120

Query: 121 ASIKAQIKLVCEGICELLQLPAETSVQEAIF 151
           +SIKA+IKLVCEGI ELLQLPAE S+ + +F
Sbjct: 121 SSIKARIKLVCEGIRELLQLPAEKSLPQRVF 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072430|gb|ACJ84575.1| unknown [Medicago truncatula] gi|388497398|gb|AFK36765.1| unknown [Medicago truncatula]

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/151 (78%), Positives = 135/151 (89%)

Query: 1   MDSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLR 60
           MD+ RQ+K+QK+EEFVD+RLKPDL    A+RDKVFEQQKIF+DLR NIEN+EKNSVTSLR
Sbjct: 1   MDNLRQQKIQKYEEFVDKRLKPDLLHVTAQRDKVFEQQKIFADLRSNIENIEKNSVTSLR 60

Query: 61  TLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLI 120
           T+VNLGSEVYMQA+VP TQHIFVDIG+GFHVEFTWSEAL FI +RE+KIARQI+EYT+LI
Sbjct: 61  TMVNLGSEVYMQAEVPSTQHIFVDIGMGFHVEFTWSEALNFIEKREEKIARQIEEYTKLI 120

Query: 121 ASIKAQIKLVCEGICELLQLPAETSVQEAIF 151
           ASIKAQIKLVCEGI ELL LPAE  + E  F
Sbjct: 121 ASIKAQIKLVCEGIRELLDLPAEKPLPERRF 151

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435696|ref|XP_002285690.1| PREDICTED: protein UXT homolog [Vitis vinifera] gi|297746436|emb|CBI16492.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/143 (81%), Positives = 132/143 (92%)

Query: 1   MDSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLR 60
           MD   Q+KVQ+FEEFVDRRLKPDL  AIAERDKVFE+Q++FS+LR+NIENLEKNSVTSL+
Sbjct: 1   MDGLIQQKVQRFEEFVDRRLKPDLVHAIAERDKVFERQEVFSNLRRNIENLEKNSVTSLQ 60

Query: 61  TLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLI 120
           T+VNLGSEVYMQA+VPDTQ IFVDIGLGFHVEFTWSEALK+IS +E+ +A QI EYTRLI
Sbjct: 61  TMVNLGSEVYMQAEVPDTQRIFVDIGLGFHVEFTWSEALKYISIKEESLANQIQEYTRLI 120

Query: 121 ASIKAQIKLVCEGICELLQLPAE 143
           ASIKAQIK+VCEGI ELLQLPAE
Sbjct: 121 ASIKAQIKIVCEGIRELLQLPAE 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487263|ref|XP_003613919.1| UXT-like protein [Medicago truncatula] gi|355515254|gb|AES96877.1| UXT-like protein [Medicago truncatula]

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/145 (79%), Positives = 130/145 (89%)

Query: 7   EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
           +K+QK+EEFVD+RLKPDL    A+RDKVFEQQKIF+DLR NIEN+EKNSVTSLRT+VNLG
Sbjct: 263 QKIQKYEEFVDKRLKPDLLHVTAQRDKVFEQQKIFADLRSNIENIEKNSVTSLRTMVNLG 322

Query: 67  SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
           SEVYMQA+VP TQHIFVDIG+GFHVEFTWSEAL FI +RE+KIARQI+EYT+LIASIKAQ
Sbjct: 323 SEVYMQAEVPSTQHIFVDIGMGFHVEFTWSEALNFIEKREEKIARQIEEYTKLIASIKAQ 382

Query: 127 IKLVCEGICELLQLPAETSVQEAIF 151
           IKLVCEGI ELL LPAE  + E  F
Sbjct: 383 IKLVCEGIRELLDLPAEKPLPERRF 407

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238007324|gb|ACR34697.1| unknown [Zea mays] gi|238014124|gb|ACR38097.1| unknown [Zea mays] gi|414887421|tpg|DAA63435.1| TPA: protein UXT isoform 1 [Zea mays] gi|414887422|tpg|DAA63436.1| TPA: protein UXT isoform 2 [Zea mays] gi|414887423|tpg|DAA63437.1| TPA: protein UXT isoform 3 [Zea mays]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 129/139 (92%)

Query: 5   RQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVN 64
           RQEKV+KFEEFVD+RLKPDLT AIA+R+KVFEQQK F DL++NIENLE+N VTS+R++VN
Sbjct: 9   RQEKVRKFEEFVDQRLKPDLTNAIAQRNKVFEQQKTFLDLKRNIENLERNGVTSMRSMVN 68

Query: 65  LGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIK 124
           LGSEVYMQA+VPDT+HIFVDIGLGFHVEFTW EAL+FIS RE ++ RQIDEYT LIASIK
Sbjct: 69  LGSEVYMQAEVPDTRHIFVDIGLGFHVEFTWQEALQFISVREARLTRQIDEYTHLIASIK 128

Query: 125 AQIKLVCEGICELLQLPAE 143
           AQIKLVCEGI E+LQLPAE
Sbjct: 129 AQIKLVCEGIREVLQLPAE 147

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242046178|ref|XP_002460960.1| hypothetical protein SORBIDRAFT_02g038240 [Sorghum bicolor] gi|241924337|gb|EER97481.1| hypothetical protein SORBIDRAFT_02g038240 [Sorghum bicolor]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 128/139 (92%)

Query: 5   RQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVN 64
           RQEKV+KFEEFVD+RLKPDL  AIA+RDKVFEQQK F DL++NIENLE+N VTS+R++VN
Sbjct: 9   RQEKVRKFEEFVDQRLKPDLANAIAQRDKVFEQQKTFLDLKRNIENLERNGVTSMRSMVN 68

Query: 65  LGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIK 124
           LGSEVYMQA+VPDT+HIFVDIGLGFHVEFTW EAL+FIS RE ++ RQIDEYT LIASIK
Sbjct: 69  LGSEVYMQAEVPDTRHIFVDIGLGFHVEFTWQEALQFISVREARLTRQIDEYTHLIASIK 128

Query: 125 AQIKLVCEGICELLQLPAE 143
           AQIKLVCEGI E+LQLPAE
Sbjct: 129 AQIKLVCEGIREVLQLPAE 147

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
DICTYBASE|DDB_G0285389	161	DDB_G0285389 "prefoldin alpha	0.900	0.844	0.404	1.1e-25
ZFIN|ZDB-GENE-040912-118	155	uxt "ubiquitously-expressed tr	0.867	0.845	0.381	9e-22
MGI|MGI:1277988	157	Uxt "ubiquitously expressed tr	0.867	0.834	0.381	5.7e-20
RGD|1359326	157	Uxt "ubiquitously-expressed, p	0.867	0.834	0.381	5.7e-20
UNIPROTKB|Q63ZY7	157	Uxt "Protein UXT" [Rattus norv	0.867	0.834	0.381	5.7e-20
UNIPROTKB|F1RWU9	156	LOC100522472 "Uncharacterized	0.867	0.839	0.381	2.5e-19
UNIPROTKB|Q32P97	156	UXT "Protein UXT" [Bos taurus	0.867	0.839	0.381	5.1e-19
UNIPROTKB|F1PPZ6	157	UXT "Uncharacterized protein"	0.867	0.834	0.381	5.1e-19
UNIPROTKB|Q9UBK9	157	UXT "Protein UXT" [Homo sapien	0.867	0.834	0.374	2.2e-18
UNIPROTKB|K7GT69	128	LOC100522472 "Uncharacterized	0.741	0.875	0.375	4.7e-16

DICTYBASE|DDB_G0285389 DDB_G0285389 "prefoldin alpha subunit family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 55/136 (40%), Positives = 93/136 (68%)

Query:     5 RQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVN 64
             R + ++ +E F++  L  DL ++I +R+KV E  + + +L+ NIE L +N + S++T++N
Sbjct:    25 RLDSIKYYETFINETLNVDLNKSIEDREKVLENLENYLELKSNIELLIENKMDSMKTMIN 84

Query:    65 LGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIK 124
             LGSE Y++A V DT +I+VDIGLG HV++T  EA+KFI+++E  + + ++  T+ I  IK
Sbjct:    85 LGSECYVKARVQDTSYIYVDIGLGIHVKYTLEEAIKFINEKETFLNKTVENQTKKINQIK 144

Query:   125 AQIKLVCEGICELLQL 140
              +I L+  G+ EL  L
Sbjct:   145 TKIDLIQNGLKELKHL 160

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-040912-118 uxt "ubiquitously-expressed transcript" [Danio rerio (taxid:7955)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 50/131 (38%), Positives = 84/131 (64%)

Query:     7 EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
             +KV ++E F+   L+ DL + + +RD V+E+   +  L+  I++++++    L+T V+LG
Sbjct:    10 DKVLQYETFISEVLRRDLQKVLEQRDAVYEKIAQYLQLKNTIQSIQESGSKELKTDVDLG 69

Query:    67 SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
                Y+QA VPD   I+V +G GF VEFT +EALKFI ++ +++    +  T+  A IKA 
Sbjct:    70 CNFYVQAHVPDASRIYVAVGYGFFVEFTHAEALKFIEKKTNQLTEYTEVLTKDAAKIKAN 129

Query:   127 IKLVCEGICEL 137
             I++V EG+ EL
Sbjct:   130 IRMVLEGLREL 140

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

MGI|MGI:1277988 Uxt "ubiquitously expressed transcript" [Mus musculus (taxid:10090)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 50/131 (38%), Positives = 78/131 (59%)

Query:     7 EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
             EKV ++E F+   L+ DL + +  RDKV+EQ  ++  LR  IE L++ + + L   V+LG
Sbjct:    15 EKVLRYETFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYMQVDLG 74

Query:    67 SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
                ++   VPDT  I+V +G GF +E T +EALKFI ++   +    D  T+   +IKA 
Sbjct:    75 CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNIKAH 134

Query:   127 IKLVCEGICEL 137
             I ++ EG+ EL
Sbjct:   135 IHMMLEGLREL 145

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000226 "microtubule cytoskeleton organization" evidence=ISO;ISS

GO:0000930 "gamma-tubulin complex" evidence=ISS

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=ISO

GO:0003682 "chromatin binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO;ISS

GO:0005856 "cytoskeleton" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=ISO;ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051297 "centrosome organization" evidence=ISO;ISS

RGD|1359326 Uxt "ubiquitously-expressed, prefoldin-like chaperone" [Rattus norvegicus (taxid:10116)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 50/131 (38%), Positives = 78/131 (59%)

Query:     7 EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
             EKV ++E F+   L+ DL + +  RDKV+EQ  ++  LR  IE L++ + + L   V+LG
Sbjct:    15 EKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYMQVDLG 74

Query:    67 SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
                ++   VPDT  I+V +G GF +E T +EALKFI ++   +    D  T+   +IKA 
Sbjct:    75 CNFFVDTMVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNIKAN 134

Query:   127 IKLVCEGICEL 137
             I ++ EG+ EL
Sbjct:   135 IHMMLEGLREL 145

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=ISO;ISS

GO:0000930 "gamma-tubulin complex" evidence=ISO;ISS

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=ISO;ISS

GO:0003682 "chromatin binding" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005813 "centrosome" evidence=ISO;ISS

GO:0005856 "cytoskeleton" evidence=ISO;ISS

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=ISO;ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051297 "centrosome organization" evidence=ISO;ISS

GO:0051015 "actin filament binding" evidence=ISO

UNIPROTKB|Q63ZY7 Uxt "Protein UXT" [Rattus norvegicus (taxid:10116)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 50/131 (38%), Positives = 78/131 (59%)

Query:     7 EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
             EKV ++E F+   L+ DL + +  RDKV+EQ  ++  LR  IE L++ + + L   V+LG
Sbjct:    15 EKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYMQVDLG 74

Query:    67 SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
                ++   VPDT  I+V +G GF +E T +EALKFI ++   +    D  T+   +IKA 
Sbjct:    75 CNFFVDTMVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNIKAN 134

Query:   127 IKLVCEGICEL 137
             I ++ EG+ EL
Sbjct:   135 IHMMLEGLREL 145

GO:0005634 "nucleus" evidence=ISS

UNIPROTKB|F1RWU9 LOC100522472 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 50/131 (38%), Positives = 78/131 (59%)

Query:     7 EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
             EKV ++E F+   L+ DL + +  RDKV+EQ   +  LR  IE L++ + + L   V+LG
Sbjct:    15 EKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLAKYLQLRNVIERLQETNHSELYMQVDLG 74

Query:    67 SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
                ++   VPDT  I+V +G GF +E T +EALKFI ++ + +    D  T+   +IKA 
Sbjct:    75 CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSNLLTELSDSLTKDSMNIKAH 134

Query:   127 IKLVCEGICEL 137
             I ++ EG+ EL
Sbjct:   135 IHMLLEGLREL 145

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q32P97 UXT "Protein UXT" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 50/131 (38%), Positives = 77/131 (58%)

Query:     7 EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
             EKV ++E F+   L+ DL + +  RDKV+EQ   +  LR  IE L++ + + L   V+LG
Sbjct:    15 EKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLAKYLQLRNVIERLQEANHSELYMQVDLG 74

Query:    67 SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
                ++   VPDT  I+V +G GF +E T +EALKFI ++   +    D  T+   +IKA 
Sbjct:    75 CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDNLTKDSMNIKAH 134

Query:   127 IKLVCEGICEL 137
             I ++ EG+ EL
Sbjct:   135 IHMLLEGLREL 145

GO:0005737 "cytoplasm" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=ISS

GO:0051297 "centrosome organization" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1PPZ6 UXT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 50/131 (38%), Positives = 78/131 (59%)

Query:     7 EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
             EKV ++E F+   L+ DL + +  RDKV+EQ   +  LR  IE L++ + + L   V+LG
Sbjct:    15 EKVLRYEAFICDVLQQDLRKVLDHRDKVYEQLAKYLQLRNVIERLQEANPSELYMQVDLG 74

Query:    67 SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
                ++   VPDT  I+V +G GF +E T +EALKFI ++ + +    D  T+   +IKA 
Sbjct:    75 CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSNLLTELSDSLTKDSMNIKAH 134

Query:   127 IKLVCEGICEL 137
             I ++ EG+ EL
Sbjct:   135 IHMLLEGLREL 145

GO:0051297 "centrosome organization" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q9UBK9 UXT "Protein UXT" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 49/131 (37%), Positives = 76/131 (58%)

Query:     7 EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
             EKV ++E F+   L+ DL + +  RDKV+EQ   +  LR  IE L++   + L   V+LG
Sbjct:    15 EKVLRYETFISDVLQRDLRKVLDHRDKVYEQLAKYLQLRNVIERLQEAKHSELYMQVDLG 74

Query:    67 SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQ 126
                ++   VPDT  I+V +G GF +E T +EALKFI ++   +    +  T+   +IKA 
Sbjct:    75 CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSNSLTKDSMNIKAH 134

Query:   127 IKLVCEGICEL 137
             I ++ EG+ EL
Sbjct:   135 IHMLLEGLREL 145

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0000930 "gamma-tubulin complex" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0051297 "centrosome organization" evidence=IMP

GO:0008017 "microtubule binding" evidence=TAS

GO:0047497 "mitochondrion transport along microtubule" evidence=TAS

GO:0048487 "beta-tubulin binding" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

UNIPROTKB|K7GT69 LOC100522472 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 42/112 (37%), Positives = 66/112 (58%)

Query:     7 EKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLG 66
             EKV ++E F+   L+ DL + +  RDKV+EQ   +  LR  IE L++ + + L   V+LG
Sbjct:    15 EKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLAKYLQLRNVIERLQETNHSELYMQVDLG 74

Query:    67 SEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTR 118
                ++   VPDT  I+V +G GF +E T +EALKFI ++ + +    D  T+
Sbjct:    75 CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSNLLTELSDSLTK 126

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54ND3	UXT_DICDI	No assigned EC number	0.4044	0.9006	0.8447	yes	no
Q63ZY7	UXT_RAT	No assigned EC number	0.3816	0.8675	0.8343	yes	no
Q32P97	UXT_BOVIN	No assigned EC number	0.3816	0.8675	0.8397	yes	no
Q9WTZ0	UXT_MOUSE	No assigned EC number	0.3816	0.8675	0.8343	yes	no
Q9UBK9	UXT_HUMAN	No assigned EC number	0.3740	0.8675	0.8343	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VIII0789 SubName- Full=Putative uncharacterized protein; (151 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
pfam02996	120	pfam02996, Prefoldin, Prefoldin subunit	5e-15
cd00584	129	cd00584, Prefoldin_alpha, Prefoldin alpha subunit;	8e-12
cd00890	129	cd00890, Prefoldin, Prefoldin is a hexameric molec	6e-10
PRK03947	140	PRK03947, PRK03947, prefoldin subunit alpha; Revie	3e-07
TIGR00293	126	TIGR00293, TIGR00293, prefoldin, archaeal alpha su	1e-06
COG1730	145	COG1730, GIM5, Predicted prefoldin, molecular chap	1e-06

>gnl|CDD|202504 pfam02996, Prefoldin, Prefoldin subunit

 Score = 66.5 bits (163), Expect = 5e-15
 Identities = 28/109 (25%), Positives = 60/109 (55%), Gaps = 1/109 (0%)

Query: 20  LKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQ 79
           LK ++    AE  ++ E  +      + ++ L K        LV LG+ ++++ +V DT 
Sbjct: 1   LKQEIESLQAELARLREAIEELEKTLETLKTL-KKEDEGKEVLVPLGAGLFVKGEVIDTD 59

Query: 80  HIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIK 128
            + VD+G G++VE +  EA++F+ +R +++ +Q+++    +  +K QI 
Sbjct: 60  KVLVDLGAGYYVEKSLEEAIEFLKKRIEELEKQLEKLEEELEKLKDQIT 108

This family comprises of several prefoldin subunits. The biogenesis of the cytoskeletal proteins actin and tubulin involves interaction of nascent chains of each of the two proteins with the oligomeric protein prefoldin (PFD) and their subsequent transfer to the cytosolic chaperonin CCT (chaperonin containing TCP-1). Electron microscopy shows that eukaryotic PFD, which has a similar structure to its archaeal counterpart, interacts with unfolded actin along the tips of its projecting arms. In its PFD-bound state, actin seems to acquire a conformation similar to that adopted when it is bound to CCT. Length = 120

>gnl|CDD|238327 cd00584, Prefoldin_alpha, Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 58.4 bits (142), Expect = 8e-12
 Identities = 34/127 (26%), Positives = 69/127 (54%), Gaps = 1/127 (0%)

Query: 13  EEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQ 72
                + L+ ++     E  ++ E    +   ++ +E L+K       TLV LG+ V+++
Sbjct: 4   LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKAD-EGKETLVPLGAGVFVK 62

Query: 73  ADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCE 132
           A V DT  + VD+G G++VE    EA++F+ ++ +++ +QI++  + +A +K QI  +  
Sbjct: 63  AKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122

Query: 133 GICELLQ 139
            + EL Q
Sbjct: 123 ELQELQQ 129

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|238453 cd00890, Prefoldin, Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 53.5 bits (129), Expect = 6e-10
 Identities = 31/122 (25%), Positives = 67/122 (54%), Gaps = 1/122 (0%)

Query: 18  RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPD 77
           ++L+  L     +  K+  Q   +   ++ +E L+K        LV LG+ ++++A+V D
Sbjct: 9   QQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAE-EEKELLVPLGAGLFVKAEVKD 67

Query: 78  TQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137
              + VD+G G +VE +  EA++F+ +R + + +QI++  + +  ++ QI  + E + +L
Sbjct: 68  DDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127

Query: 138 LQ 139
            Q
Sbjct: 128 QQ 129

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 42  SDLRKNIENLE--KNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEAL 99
           ++L    E LE  K+      TLV +G+  +++A V D   + V +G G+  E    EA+
Sbjct: 37  NELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAI 96

Query: 100 KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEA 149
           + + +R        +E  + +  ++  ++ +   I +L Q   +   + A
Sbjct: 97  EILDKR-------KEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA 139

Length = 140

>gnl|CDD|129394 TIGR00293, TIGR00293, prefoldin, archaeal alpha subunit/eukaryotic subunit 5

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 20/67 (29%), Positives = 42/67 (62%)

Query: 61  TLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLI 120
           TLV +G+  +++A V DT  + V IG G++VE    EA++F+ +R +++ + I++    +
Sbjct: 50  TLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEAL 109

Query: 121 ASIKAQI 127
           A + ++ 
Sbjct: 110 AELASRA 116

Members of this protein family, rich in coiled coil regions, are molecular chaperones in the class of the prefoldin (GimC) alpha subunit. Prefoldin is a hexamer of two alpha and four beta subunits. This protein appears universal in the archaea but is restricted to Aquifex aeolicus among bacteria so far. Eukaryotes have several related proteins; only prefoldin subunit 5, which appeared the most similar to archaeal prefoldin alpha, is included in this model. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil [Protein fate, Protein folding and stabilization]. Length = 126

>gnl|CDD|224644 COG1730, GIM5, Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 42  SDLRKNIENLE--KNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEAL 99
           S+L+  IE LE  K +      LV +G+ ++++A V D   + V IG G++ E +  EA+
Sbjct: 37  SELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAI 96

Query: 100 KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQEA 149
           +F       + ++I+E  + I  ++  +  + + I +L Q   +   ++A
Sbjct: 97  EF-------LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139

Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	99.97
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	99.97
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	99.96
PRK03947	140	prefoldin subunit alpha; Reviewed	99.96
PRK14011	144	prefoldin subunit alpha; Provisional	99.96
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	99.96
KOG3047	157	consensus Predicted transcriptional regulator UXT	99.96
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.95
KOG3048	153	consensus Molecular chaperone Prefoldin, subunit 5	99.94
PRK01203	130	prefoldin subunit alpha; Provisional	99.94
KOG3313	187	consensus Molecular chaperone Prefoldin, subunit 3	99.8
KOG3130	514	consensus Uncharacterized conserved protein [Funct	99.16
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	98.85
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	98.72
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	98.56
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	98.28
PRK03947	140	prefoldin subunit alpha; Reviewed	98.18
PRK09343	121	prefoldin subunit beta; Provisional	98.16
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	98.14
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	98.13
PRK14011	144	prefoldin subunit alpha; Provisional	98.13
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	97.93
PRK01203	130	prefoldin subunit alpha; Provisional	97.89
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	97.69
PF13758	99	Prefoldin_3: Prefoldin subunit	97.13
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	97.0
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	96.24
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	96.04
PRK00736	68	hypothetical protein; Provisional	89.64
PRK00295	68	hypothetical protein; Provisional	89.52
PRK09343	121	prefoldin subunit beta; Provisional	88.79
PF15456	124	Uds1: Up-regulated During Septation	86.26
TIGR02231	525	conserved hypothetical protein. This family consis	84.72
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	84.67
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	84.45
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	81.99
PRK02793	72	phi X174 lysis protein; Provisional	80.15

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=99.97  E-value=1.1e-29  Score=182.19  Aligned_cols=119  Identities=27%  Similarity=0.521  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHHHH
Q 031890           20 LKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEAL   99 (151)
Q Consensus        20 L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~eA~   99 (151)
                      |+++++.++++++.+...+.+|..++++|+.+++ ...+.+++||+|+|+||+|+|+++++|+|+||+|||||+|+++|+
T Consensus         1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~-~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~   79 (120)
T PF02996_consen    1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKK-EKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAI   79 (120)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHH
Confidence            4567889999999999999999999999999998 336889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890          100 KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ  139 (151)
Q Consensus       100 ~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~  139 (151)
                      +|+++|++.+++.++++++.+..++++++.+...++++++
T Consensus        80 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  119 (120)
T PF02996_consen   80 EFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ  119 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999875

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.97  E-value=1.5e-28  Score=178.92  Aligned_cols=123  Identities=28%  Similarity=0.460  Sum_probs=117.3

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecH
Q 031890           16 VDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTW   95 (151)
Q Consensus        16 ~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~   95 (151)
                      ..+.|+++++.++++++.+...+++|..++++|+.+++. ..+.++|||+|+|+|++|+|+++++|+|+||+|||||+|+
T Consensus         7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~-~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~   85 (129)
T cd00584           7 QLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKA-DEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDL   85 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecH
Confidence            448899999999999999999999999999999999874 3588999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890           96 SEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ  139 (151)
Q Consensus        96 ~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~  139 (151)
                      ++|++|+++|++.|++.++++.+.+..++++++.+...++++++
T Consensus        86 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~  129 (129)
T cd00584          86 EEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQQ  129 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999998863

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=99.96  E-value=4.4e-28  Score=175.78  Aligned_cols=117  Identities=21%  Similarity=0.349  Sum_probs=112.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE   97 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e   97 (151)
                      +.|+++++.+++++..+...+++|..++++|+.++..  .+.+++||+|+|+|++|+|+++++|+||||+|||||+|+++
T Consensus         9 ~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~--~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~e   86 (126)
T TIGR00293         9 QILQQQVESLQAQIAALRALIAELETAIETLEDLKGA--EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEE   86 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHH
Confidence            7889999999999999999999999999999999865  57899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE  136 (151)
Q Consensus        98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~  136 (151)
                      |++|+++|++.|++.++++.+.+.+++++++.+...+++
T Consensus        87 A~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~  125 (126)
T TIGR00293        87 AIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ  125 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999888764

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=99.96  E-value=1.5e-27  Score=176.06  Aligned_cols=132  Identities=15%  Similarity=0.397  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEe
Q 031890            6 QEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDI   85 (151)
Q Consensus         6 ~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~v   85 (151)
                      +..+.++-... +.|+.+++.+..++..+...+.+|..++++|+.+++.. .+.+++||+|+|+|++|+|+++++|+|||
T Consensus         5 ~~~l~~l~~~~-~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~-~~~e~lvplg~~~yv~~~v~~~~kV~v~l   82 (140)
T PRK03947          5 EQELEELAAQL-QALQAQIEALQQQLEELQASINELDTAKETLEELKSKG-EGKETLVPIGAGSFVKAKVKDKDKVIVSL   82 (140)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCeEEEEcCCCcEEEEEecCCCeEEEEc
Confidence            44566666655 88999999999999999999999999999999998754 57899999999999999999999999999


Q ss_pred             cceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890           86 GLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ  139 (151)
Q Consensus        86 G~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~  139 (151)
                      |+|||||+|+++|++|+++|++.|++.++.+.+.+.++++++..+...+++++.
T Consensus        83 G~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~  136 (140)
T PRK03947         83 GAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ  136 (140)
T ss_pred             CCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988764

>PRK14011 prefoldin subunit alpha; Provisional

Probab=99.96  E-value=1.3e-27  Score=177.50  Aligned_cols=115  Identities=15%  Similarity=0.229  Sum_probs=106.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE   97 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e   97 (151)
                      ++|+++++.+.++++.|+..+++|..+.++|+.+.    .+.++|||||+|+||+|+|.|+++|+|+||+|||||+|.++
T Consensus        13 ~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~----~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~e   88 (144)
T PRK14011         13 EVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK----TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSE   88 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHH
Confidence            66789999999999999999999988888888664    36899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE  136 (151)
Q Consensus        98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~  136 (151)
                      |++|+++|++.|++..+++...+.++...+..+...+++
T Consensus        89 A~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~  127 (144)
T PRK14011         89 VIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEK  127 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998866543

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.9e-27  Score=176.24  Aligned_cols=134  Identities=19%  Similarity=0.348  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEE
Q 031890            4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFV   83 (151)
Q Consensus         4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V   83 (151)
                      .++.++.++..-+ +.|+.+++.++++++.|+..++++..++++|+.++..+. |.++|||+|+|+|++|+|.++++|+|
T Consensus         3 ~~~~~le~l~a~l-q~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~-g~E~LVpvGag~fv~~kv~~~~kviV   80 (145)
T COG1730           3 QTQQELEELAAQL-QILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGE-GKEVLVPVGAGLFVKAKVKDMDKVIV   80 (145)
T ss_pred             chhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CceEEEEcCCCceEEEEeccCceEEE
Confidence            3455666666545 788999999999999999999999999999999998754 77999999999999999999999999


Q ss_pred             EecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890           84 DIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ  139 (151)
Q Consensus        84 ~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~  139 (151)
                      +||+|||||+|.++|++||++|++.|++.+.+++..++++...+..+...+++++.
T Consensus        81 ~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q  136 (145)
T COG1730          81 SIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ  136 (145)
T ss_pred             EcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888763

>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]

Probab=99.96  E-value=3e-27  Score=170.39  Aligned_cols=145  Identities=27%  Similarity=0.454  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEE
Q 031890            4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFV   83 (151)
Q Consensus         4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V   83 (151)
                      ++.+.+.+||.|+.+++++++.+....++.+++++++|.+++.+|+.|....-+..+..+++||++|+...|+||++|+|
T Consensus        12 Aq~ekm~r~EdfiedVih~di~k~~d~~dKl~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~V   91 (157)
T KOG3047|consen   12 AQEEKMKRLEDFIEDVIHPDIAKEEDEFDKLQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVV   91 (157)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEE
Confidence            66778999999999999999999999999999999999999999999988766678899999999999999999999999


Q ss_pred             EecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchhh
Q 031890           84 DIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAETSVQE  148 (151)
Q Consensus        84 ~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~~~~~~  148 (151)
                      .+|.|||+|+++.+|++|++++.+.|.+..++|+++...++++|.+++.++..+|+.|.-++.|-
T Consensus        92 aL~~~fflElkLadAiKf~DRK~dlLkel~ekLqKdsmkiKa~ihMLLagl~elqg~~~f~ekPh  156 (157)
T KOG3047|consen   92 ALCDDFFLELKLADAIKFCDRKMDLLKELMEKLQKDSMKIKADIHMLLAGLDELQGEPFFFEKPH  156 (157)
T ss_pred             EeecceeeeehHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcCCccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999998888774

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.95  E-value=1.3e-25  Score=162.41  Aligned_cols=121  Identities=26%  Similarity=0.458  Sum_probs=115.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE   97 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e   97 (151)
                      +.|++++..+.+++..+...+.+|..++++|+.+.+.. .+.++++|+|+++|++|+|+++++|+|+||+|||||+|.++
T Consensus         9 ~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~-~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~e   87 (129)
T cd00890           9 QQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAE-EEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEE   87 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHH
Confidence            78899999999999999999999999999999998754 46789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890           98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ  139 (151)
Q Consensus        98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~  139 (151)
                      |.+|+++|++.+++.++++++.+..++++++.+...|+++++
T Consensus        88 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~  129 (129)
T cd00890          88 AIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQQ  129 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999998864

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2e-25  Score=163.13  Aligned_cols=129  Identities=15%  Similarity=0.296  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecc
Q 031890            8 KVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGL   87 (151)
Q Consensus         8 ~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~   87 (151)
                      .++++.... +.+.++|..++..+..|......|.+++.+|+.+.... .|.++|||+++++||||++.|.++++|+||+
T Consensus        14 sleQL~~lk-~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~-eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGT   91 (153)
T KOG3048|consen   14 SLEQLGALK-KQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAAN-EGKKLLVPLTSSLYVPGKLSDNSKFLVDIGT   91 (153)
T ss_pred             CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CCCeEEEecccceeccceeccccceeEeccC
Confidence            467788755 89999999999999999999999999999999887765 6899999999999999999999999999999


Q ss_pred             eeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890           88 GFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  138 (151)
Q Consensus        88 g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~  138 (151)
                      |||||+|.++|++|++||++.|.+++++++..+.+++.....+++.+++..
T Consensus        92 GYyVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK~~~~~~v~~v~q~Kv  142 (153)
T KOG3048|consen   92 GYYVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEKTRTRASVMDVLQAKV  142 (153)
T ss_pred             ceEEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988887654

>PRK01203 prefoldin subunit alpha; Provisional

Probab=99.94  E-value=4.2e-25  Score=160.81  Aligned_cols=118  Identities=13%  Similarity=0.218  Sum_probs=106.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE   97 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e   97 (151)
                      +.++++.+.+.++++.++..+++|..+.++|+.+...  ++.++|||||+|+||+|+|.|+++|+|+||+|||||+|.++
T Consensus        10 ~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~--~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~~e~   87 (130)
T PRK01203         10 NYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELD--NSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEERER   87 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--CCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEecHHH
Confidence            6788889999999999999999998888887775533  57899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890           98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ  139 (151)
Q Consensus        98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~  139 (151)
                      |+++|+++++.|++.+...+..+..+.+++..+.  |+.+.+
T Consensus        88 kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~--~~~~~~  127 (130)
T PRK01203         88 TIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY--ITEATR  127 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence            9999999999999999999999999999998887  666543

>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=8.8e-19  Score=132.19  Aligned_cols=116  Identities=15%  Similarity=0.251  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHHHHHHH
Q 031890           25 TRAIAERDKVFEQQKIFSDLRKNIENLEKNSV--TSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFI  102 (151)
Q Consensus        25 ~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~--~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~eA~~~l  102 (151)
                      ..+.+++..+...|+++....+.+..|.+..+  .+.++.+-|..|+|.+|.|+++++|.+|+|+++++|++++||.++|
T Consensus        54 ~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLL  133 (187)
T KOG3313|consen   54 ASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALL  133 (187)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHH
Confidence            46677777888889999999999999987643  4589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 031890          103 SQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL  140 (151)
Q Consensus       103 ~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l  140 (151)
                      ++++..+.+.++.+..+++.+++|++.++.+++++|||
T Consensus       134 kknl~sa~k~l~~~~~DldfLrdQvTTtEVN~ArvYNw  171 (187)
T KOG3313|consen  134 KKNLTSAVKSLDVLEEDLDFLRDQVTTTEVNMARVYNW  171 (187)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhceeeeeeeeeeeec
Confidence            99999999999999999999999999999999999998

>KOG3130 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=1.9e-10  Score=96.81  Aligned_cols=106  Identities=18%  Similarity=0.354  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHHHHHHHH
Q 031890           24 LTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFIS  103 (151)
Q Consensus        24 L~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~eA~~~l~  103 (151)
                      +++++...+....--.+|..+.+.+..+.++.  +..+|||+|.-.|++|++.+|+.|+|.+|.|||.++|.-.|.++++
T Consensus        12 ~~~~~~ete~~~~v~~dye~~~erl~~~~kkL--s~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~~CS~h~A~~I~~   89 (514)
T KOG3130|consen   12 KARLEVETECRKKVDNDYEALRERLSTLPKKL--SYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFAKCSAHQAVGIVE   89 (514)
T ss_pred             HHHhHHHHHHHHHHhhhHHHHHHHHHHhhhhc--ccceeeecccccccccceeeechhhhhhccchHhhhhHHHHHHHHH
Confidence            35555566666666678999999999998873  7889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890          104 QREDKIARQIDEYTRLIASIKAQIKLVC  131 (151)
Q Consensus       104 ~ri~~L~~~~~~l~~~l~~i~~~i~~~~  131 (151)
                      .|++..+++++++.+.+.-.-.+++...
T Consensus        90 ~R~~~~r~q~~~l~~~~~n~~~~vkf~~  117 (514)
T KOG3130|consen   90 HRKEHVRKQIDDLKKVMKNFESRVKFTE  117 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhhhcc
Confidence            9999999999999888777666666543

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=98.85  E-value=1e-07  Score=67.70  Aligned_cols=108  Identities=18%  Similarity=0.264  Sum_probs=89.0

Q ss_pred             chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCee
Q 031890            2 DSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHI   81 (151)
Q Consensus         2 ~~~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V   81 (151)
                      .|..+..+.+|     +.++.+++.+..++..+..++.+...+.+.|+.+++    +..++-++|+              
T Consensus         2 ~~~~q~~~~~~-----q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~----d~~vyk~VG~--------------   58 (110)
T TIGR02338         2 PPQVQNQLAQL-----QQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPD----DTPVYKSVGN--------------   58 (110)
T ss_pred             CHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----cchhHHHhch--------------
Confidence            34555555554     456888999999999999999998777777766653    3456666665              


Q ss_pred             EEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890           82 FVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ  139 (151)
Q Consensus        82 ~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~  139 (151)
                             +||+.|.++|+..+++|++.++..++.+.+.+..++.++..++..++++.+
T Consensus        59 -------vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~  109 (110)
T TIGR02338        59 -------LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA  109 (110)
T ss_pred             -------hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                   999999999999999999999999999999999999999999999988753

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=98.72  E-value=1.8e-07  Score=65.88  Aligned_cols=96  Identities=21%  Similarity=0.219  Sum_probs=84.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE   97 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e   97 (151)
                      +.|+.+++.+..++..+...+.+...+.+.|..+++    +..++.++|.                     +||+.|.++
T Consensus         9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~----d~~vy~~VG~---------------------vfv~~~~~e   63 (105)
T cd00632           9 QQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLAD----DAEVYKLVGN---------------------VLVKQEKEE   63 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----cchHHHHhhh---------------------HHhhccHHH
Confidence            678889999999999999999998887777777653    3345555665                     999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890           98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  138 (151)
Q Consensus        98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~  138 (151)
                      |...|+++++.++..++.+.+.+..+..++..+...|+.++
T Consensus        64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~  104 (105)
T cd00632          64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ  104 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998876

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=98.56  E-value=1.1e-06  Score=63.11  Aligned_cols=113  Identities=16%  Similarity=0.283  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------------CCCceEEEecCCeeeE
Q 031890            4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNS------------VTSLRTLVNLGSEVYM   71 (151)
Q Consensus         4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~------------~~~~e~lVplg~~~fv   71 (151)
                      +......+|..-+ +.|...+.++...+..+...++.+..+...........            ..+.+++|+||+|+||
T Consensus         3 ~l~~~~~~l~~~i-~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v   81 (129)
T cd00890           3 ELAAQLQQLQQQL-EALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV   81 (129)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence            4455666777666 78888888888888888888888777765544322110            1356799999999999


Q ss_pred             eEEeCCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           72 QADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLV  130 (151)
Q Consensus        72 ~a~i~~~~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~  130 (151)
                      ...+.+.             ...+++.+++++++++.+++.+.++...+..++..+..+
T Consensus        82 e~~~~eA-------------~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~  127 (129)
T cd00890          82 EKSLEEA-------------IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL  127 (129)
T ss_pred             EecHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9998875             467999999999999999999999999999999998765

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=98.28  E-value=1.5e-05  Score=57.68  Aligned_cols=113  Identities=15%  Similarity=0.280  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhc---------CCCCceEEEecCCeeeE
Q 031890            4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKN---IENLEKN---------SVTSLRTLVNLGSEVYM   71 (151)
Q Consensus         4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~---i~~l~~~---------~~~~~e~lVplg~~~fv   71 (151)
                      +......+|..-+ +.|.+++..+...+..+...++.+..+...   .+.+-+.         -..+.+++|++|+|+|+
T Consensus         3 ~l~~~~~~l~~~i-~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v   81 (129)
T cd00584           3 QLAAQLQVLQQEI-EELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV   81 (129)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Confidence            4556677777766 899999999999999999999988777651   1111111         02356899999999999


Q ss_pred             eEEeCCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           72 QADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLV  130 (151)
Q Consensus        72 ~a~i~~~~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~  130 (151)
                      ...+.+..             ..++.-++.+++.++.+++.+.++++.+..+...+...
T Consensus        82 E~~~~eA~-------------~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~  127 (129)
T cd00584          82 EKDLEEAI-------------EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL  127 (129)
T ss_pred             EecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998854             56899999999999999999999999999999988764

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=98.18  E-value=4.6e-05  Score=55.96  Aligned_cols=61  Identities=15%  Similarity=0.269  Sum_probs=35.3

Q ss_pred             CCeeEEEecceeEEeecHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890           78 TQHIFVDIGLGFHVEFTWSEALK-------------FISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  138 (151)
Q Consensus        78 ~~~V~V~vG~g~~vE~t~~eA~~-------------~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~  138 (151)
                      ..+++|++|+|+||.-++.+..+             .++.-++.+++.++.+.+.+..+...+..+...+.+++
T Consensus        55 ~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~  128 (140)
T PRK03947         55 GKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLA  128 (140)
T ss_pred             CCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666665544433             45566666666666666666666666665555554443

>PRK09343 prefoldin subunit beta; Provisional

Probab=98.16  E-value=7.1e-05  Score=54.11  Aligned_cols=113  Identities=15%  Similarity=0.231  Sum_probs=85.3

Q ss_pred             CchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCe
Q 031890            1 MDSYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQH   80 (151)
Q Consensus         1 ~~~~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~   80 (151)
                      |++++++.+...-.-+ +.++.++..+..++..+..++.+...+.+-++.|++                        ..+
T Consensus         1 ~~~~~~~~~q~~~~~~-q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~------------------------d~~   55 (121)
T PRK09343          1 MAENIPPEVQAQLAQL-QQLQQQLERLLQQKSQIDLELREINKALEELEKLPD------------------------DTP   55 (121)
T ss_pred             ChhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------cch
Confidence            4555555554433322 678888999999999999988887666665555542                        233


Q ss_pred             eEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890           81 IFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ  139 (151)
Q Consensus        81 V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~  139 (151)
                      |+-.|| .+||..+.++|+.-+++|++.++..++.+.+....++.++...+..|+++..
T Consensus        56 VYk~VG-~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~  113 (121)
T PRK09343         56 IYKIVG-NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS  113 (121)
T ss_pred             hHHHhh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455 3667779999999999999999999999999999999999999988887654

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=98.14  E-value=5.3e-05  Score=54.57  Aligned_cols=107  Identities=16%  Similarity=0.214  Sum_probs=80.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE   97 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e   97 (151)
                      +.|...++++.+.++.+...+..+......++...+       ++      -++++.  +...++|++|.|+||.-++++
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~-------~L------~~l~~~--~~~~~lv~lg~~~~v~~~v~~   66 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIE-------TL------EDLKGA--EGKETLVPVGAGSFVKAKVKD   66 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH------Hhcccc--CCCeEEEEcCCCeEEEEEeCC
Confidence            356778888888888888888886554444433321       11      111333  457899999999999999988


Q ss_pred             HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890           98 AL-------------KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ  139 (151)
Q Consensus        98 A~-------------~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~  139 (151)
                      ..             .-++.-++.++++++.+.+.+..+...+..+...+.++..
T Consensus        67 ~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~  121 (126)
T TIGR00293        67 TDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ  121 (126)
T ss_pred             CCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87             6779999999999999999999999999988888877653

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=98.13  E-value=0.0003  Score=48.64  Aligned_cols=95  Identities=16%  Similarity=0.315  Sum_probs=75.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE   97 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e   97 (151)
                      ..|+.++..+..++..+...+.++..+.+.|..+++                        ..+++..|| ++||+.+.++
T Consensus         8 ~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~------------------------~~~~y~~vG-~~fv~~~~~~   62 (106)
T PF01920_consen    8 QELNQQLQQLEQQIQQLERQLRELELTLEELEKLDD------------------------DRKVYKSVG-KMFVKQDKEE   62 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST------------------------T-EEEEEET-TEEEEEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------------------cchhHHHHh-HHHHHhhHHH
Confidence            567788888888988888888887665555555432                        234455554 5689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL  137 (151)
Q Consensus        98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l  137 (151)
                      +...|+.+++.++..++++.+.+..+..++..+...+..+
T Consensus        63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~  102 (106)
T PF01920_consen   63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL  102 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988777543

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PRK14011 prefoldin subunit alpha; Provisional

Probab=98.13  E-value=6.5e-05  Score=55.97  Aligned_cols=125  Identities=14%  Similarity=0.295  Sum_probs=95.3

Q ss_pred             CchHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---------CCCceEEEecCCee
Q 031890            1 MDSYRQEKVQKFEEFVD--RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNS---------VTSLRTLVNLGSEV   69 (151)
Q Consensus         1 ~~~~~~~~i~~~e~f~~--~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~---------~~~~e~lVplg~~~   69 (151)
                      |+..++..+..|+.+-.  +.|..++..+......+...++.+..+...-+.|-+.+         ..+.+++|++|.|+
T Consensus         1 ~~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy   80 (144)
T PRK14011          1 MNEELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDI   80 (144)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCe
Confidence            66777887766666543  88999999999999999988888776654433332211         23568999999999


Q ss_pred             eEeEEeCCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890           70 YMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  138 (151)
Q Consensus        70 fv~a~i~~~~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~  138 (151)
                      ||.=.+.+.-             ..++.=++++++..+.+.+.+++++..+..+...+..-...+.+..
T Consensus        81 ~VEk~~~eA~-------------~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~  136 (144)
T PRK14011         81 YLEKDVSEVI-------------EDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQ  136 (144)
T ss_pred             EEEecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9998887732             2367788999999999999999999999999988777666664443

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.00038  Score=50.19  Aligned_cols=111  Identities=15%  Similarity=0.300  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeE
Q 031890            3 SYRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIF   82 (151)
Q Consensus         3 ~~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~   82 (151)
                      |+.++.+.+|     +.|+.+++.+..++.++..++.+...+.+-|+.+.+.                        ..|+
T Consensus         6 p~~q~~l~q~-----QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD------------------------~~vY   56 (119)
T COG1382           6 PEVQAQLAQL-----QQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDED------------------------APVY   56 (119)
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------------------------cHHH
Confidence            3455555444     5678899999999999999999976666655555432                        1334


Q ss_pred             EEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 031890           83 VDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE  143 (151)
Q Consensus        83 V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~  143 (151)
                      =.|| +++|..+.++|.+=|++|++.|+.+++.|+++...++.++..+...|+...+=..+
T Consensus        57 k~VG-~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~  116 (119)
T COG1382          57 KKVG-NLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAAN  116 (119)
T ss_pred             HHhh-hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            4455 56778899999999999999999999999999999999999999999888765443

>PRK01203 prefoldin subunit alpha; Provisional

Probab=97.89  E-value=0.00047  Score=50.53  Aligned_cols=101  Identities=11%  Similarity=0.182  Sum_probs=81.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeec
Q 031890           19 RLKPDLTRAIAERDKVFEQQKIFSDLR----KNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFT   94 (151)
Q Consensus        19 ~L~~dL~~l~~~~~~l~~~i~e~~~lk----~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t   94 (151)
                      -+..+++-+.++++.+..+++.+....    .+++.|..                   ..-.....|+|++|+|.||-=+
T Consensus         4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~-------------------~~~~~~~eiLVPLg~slYV~gk   64 (130)
T PRK01203          4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD-------------------NELDNSKELLISIGSGIFADGN   64 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------------cccCCCCeEEEEccCCceEeEE
Confidence            356788889999999998888765443    33333332                   1123568999999999999988


Q ss_pred             HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890           95 WSEALK-------------FISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  138 (151)
Q Consensus        95 ~~eA~~-------------~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~  138 (151)
                      +.+..+             -++++++.|+++++++++.+..++.+++.+...+++|.
T Consensus        65 i~d~~kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         65 IKKDKDLIVPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             ecCCCeEEEEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887765             46789999999999999999999999999999999887

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.0019  Score=48.23  Aligned_cols=117  Identities=11%  Similarity=0.164  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhcC---------CCCceEEEecCCeeeEe
Q 031890            5 RQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNI---ENLEKNS---------VTSLRTLVNLGSEVYMQ   72 (151)
Q Consensus         5 ~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i---~~l~~~~---------~~~~e~lVplg~~~fv~   72 (151)
                      +...+..|..-+ +.|++++..+...+..+...+.-+..++..=   +.|-+.+         ....+++||||+|+|+.
T Consensus        11 l~a~lq~l~~qi-e~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae   89 (145)
T COG1730          11 LAAQLQILQSQI-ESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAE   89 (145)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeee
Confidence            344555566555 7788888888887777777777655554332   2221110         12357888888888877


Q ss_pred             EEeCCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           73 ADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGIC  135 (151)
Q Consensus        73 a~i~~~~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~  135 (151)
                      =.....             -..+++=++-|++.+..++..++++...+..+.+.++.+.....
T Consensus        90 ~~~~eA-------------ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~  139 (145)
T COG1730          90 KSADEA-------------IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA  139 (145)
T ss_pred             ecHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665542             12367777778888888888888888888888777776655443

>PF13758 Prefoldin_3: Prefoldin subunit

Probab=97.13  E-value=0.00024  Score=49.59  Aligned_cols=91  Identities=14%  Similarity=0.250  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHH
Q 031890           34 VFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQI  113 (151)
Q Consensus        34 l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~  113 (151)
                      .+.--.||..||+-|..++.....+.+=+.-++.++  .|.+.+...|=.-+|.|-.+.+|.++++.+|++|++-+.+.+
T Consensus         7 Wq~w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f--~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni   84 (99)
T PF13758_consen    7 WQTWEAEYEGLKEEIEALPEDDDATREDLLRIRRDF--GGSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNI   84 (99)
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHhc--CcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            334456899999999998652223344455566554  478888888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 031890          114 DEYTRLIASIKAQ  126 (151)
Q Consensus       114 ~~l~~~l~~i~~~  126 (151)
                      ..+++.+....++
T Consensus        85 ~tleKql~~aE~k   97 (99)
T PF13758_consen   85 ETLEKQLEAAENK   97 (99)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998766544

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=97.00  E-value=0.004  Score=44.05  Aligned_cols=101  Identities=15%  Similarity=0.281  Sum_probs=72.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhc---------CCCCceEEEecCCeeeEeEEeCCCCeeEEEe
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRK---NIENLEKN---------SVTSLRTLVNLGSEVYMQADVPDTQHIFVDI   85 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~---~i~~l~~~---------~~~~~e~lVplg~~~fv~a~i~~~~~V~V~v   85 (151)
                      +.|...+..+...++.+...+..+..+..   ..+.+-+.         -..+.+++|++|+|+|+.-.+.+.-+     
T Consensus         6 ~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~-----   80 (120)
T PF02996_consen    6 ENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIE-----   80 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHH-----
Confidence            44566666676666666666666655554   22222111         12356899999999999999887433     


Q ss_pred             cceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           86 GLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVC  131 (151)
Q Consensus        86 G~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~  131 (151)
                              -+..=++.+++.++.++..+..+...+..+...+..+.
T Consensus        81 --------~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~  118 (120)
T PF02996_consen   81 --------FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY  118 (120)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    36788899999999999999999999999988887654

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.02  Score=40.71  Aligned_cols=53  Identities=19%  Similarity=0.197  Sum_probs=46.6

Q ss_pred             eeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 031890           88 GFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL  140 (151)
Q Consensus        88 g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l  140 (151)
                      .+.|-.+++||..-+++|++.++..+..+...+..+..++...-..+-++|+-
T Consensus        60 pvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~  112 (120)
T KOG3478|consen   60 PVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQA  112 (120)
T ss_pred             chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677889999999999999999999999999999999998888877777653

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=0.094  Score=38.47  Aligned_cols=89  Identities=13%  Similarity=0.206  Sum_probs=72.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE   97 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e   97 (151)
                      +.|+++++.+.+++..|..+..|+.-..++|+.+...            .-+|             -.=.|+.||+|..+
T Consensus        25 n~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~------------RKCf-------------RmIgGvLVErTVke   79 (140)
T KOG4098|consen   25 NALRSELQQIASKITDLEMDLREHKLVIETLKDLDPT------------RKCF-------------RMIGGVLVERTVKE   79 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChh------------hHHH-------------HHhccchhhhhHHH
Confidence            6789999999999999999999997776666655432            1122             12248899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVC  131 (151)
Q Consensus        98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~  131 (151)
                      ..=.|....+.++..+..|.+++..+...++.+.
T Consensus        80 VlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk  113 (140)
T KOG4098|consen   80 VLPILQTNKENIEKVIKKLTDQLVQKGKELNKFK  113 (140)
T ss_pred             HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988887664

>PRK00736 hypothetical protein; Provisional

Probab=89.64  E-value=3  Score=27.02  Aligned_cols=45  Identities=16%  Similarity=0.237  Sum_probs=23.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 031890           94 TWSEALKFISQREDKIARQIDEYTRL-------IASIKAQIKLVCEGICELL  138 (151)
Q Consensus        94 t~~eA~~~l~~ri~~L~~~~~~l~~~-------l~~i~~~i~~~~~~i~~l~  138 (151)
                      |.++-+.-|.-|+.+.++.++.|++.       |..++.++..+...+....
T Consensus         2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736          2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE   53 (68)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44445555555555555555555555       4555555555544444433

>PRK00295 hypothetical protein; Provisional

Probab=89.52  E-value=3.1  Score=26.94  Aligned_cols=45  Identities=16%  Similarity=0.240  Sum_probs=22.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 031890           94 TWSEALKFISQREDKIARQIDEYT-------RLIASIKAQIKLVCEGICELL  138 (151)
Q Consensus        94 t~~eA~~~l~~ri~~L~~~~~~l~-------~~l~~i~~~i~~~~~~i~~l~  138 (151)
                      |.++-+.-|.-|+.+.++.++.|+       +.|..++.++..+...+..+.
T Consensus         2 ~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          2 SLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444445555555555555544       445555555555544444443

>PRK09343 prefoldin subunit beta; Provisional

Probab=88.79  E-value=5.3  Score=28.61  Aligned_cols=109  Identities=12%  Similarity=0.173  Sum_probs=84.9

Q ss_pred             CchHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCC
Q 031890            1 MDSYRQEKVQKFEEFVD--RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDT   78 (151)
Q Consensus         1 ~~~~~~~~i~~~e~f~~--~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~   78 (151)
                      |.+.++..+.+|...-.  +.+..+.+.+..++......+.++..+.+--...+..            +.+||+-...+ 
T Consensus         5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~V------------G~vlv~qd~~e-   71 (121)
T PRK09343          5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIV------------GNLLVKVDKTK-   71 (121)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHh------------hHHHhhccHHH-
Confidence            34577887777776543  6777888999999999999999988887665666543            23566655444 


Q ss_pred             CeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           79 QHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI  134 (151)
Q Consensus        79 ~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i  134 (151)
                                  +-.++++-++|++.+++.+++..+.+++.+...+.++..+....
T Consensus        72 ------------~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~  115 (121)
T PRK09343         72 ------------VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY  115 (121)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                        33468999999999999999999999999999999998876543

>PF15456 Uds1: Up-regulated During Septation

Probab=86.26  E-value=11  Score=27.38  Aligned_cols=94  Identities=16%  Similarity=0.236  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecce
Q 031890            9 VQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLG   88 (151)
Q Consensus         9 i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g   88 (151)
                      |..+|.+  +.|+.++..|..+++.++..+.--...+++-..+......+...      +.|                 +
T Consensus        18 iLs~eEV--e~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~------~~~-----------------~   72 (124)
T PF15456_consen   18 ILSFEEV--EELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRR------ARF-----------------S   72 (124)
T ss_pred             ccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc------cCC-----------------C
Confidence            5556663  88999999999999999999986666666666665432111111      111                 1


Q ss_pred             eEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           89 FHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQI  127 (151)
Q Consensus        89 ~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i  127 (151)
                      -=.-...+++..-.+++++.+...+.++...+..++..+
T Consensus        73 ~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rL  111 (124)
T PF15456_consen   73 RESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRL  111 (124)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            112235788999999999999999999999998888765

>TIGR02231 conserved hypothetical protein

Probab=84.72  E-value=19  Score=31.81  Aligned_cols=101  Identities=17%  Similarity=0.286  Sum_probs=66.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE   97 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e   97 (151)
                      ..|+.+|+.++.+++.+..++.-+......|+.+....      .-+++.++ -.+. .+             ++ .+.+
T Consensus        74 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~-~~~~-~~-------------~~-~~~~  131 (525)
T TIGR02231        74 AELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGL------TEPIKDSA-KRNE-PD-------------LK-EWFQ  131 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------cccccccc-ccCC-CC-------------HH-HHHH
Confidence            34555666666666666666666555555665554321      11233222 0000 00             00 4778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 031890           98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL  140 (151)
Q Consensus        98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l  140 (151)
                      ...|+..++..+...+..+...+.+++.++..+...++.+..-
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~  174 (525)
T TIGR02231       132 AFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG  174 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            8899999999999999999999999999999999888887663

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=84.67  E-value=5  Score=29.21  Aligned_cols=44  Identities=27%  Similarity=0.442  Sum_probs=30.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL  137 (151)
Q Consensus        94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l  137 (151)
                      ++..|++.|..||+.+..++++..+....++++...+...+.+.
T Consensus        58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i  101 (126)
T PF07889_consen   58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQI  101 (126)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            56777788888888887777777777666666666665555443

The region featured in this family is approximately 100 amino acids long.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=84.45  E-value=5.9  Score=25.55  Aligned_cols=44  Identities=23%  Similarity=0.327  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890           95 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  138 (151)
Q Consensus        95 ~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~  138 (151)
                      ++....|.++-++.|++.+-..++.|..++.+++.+...+..+.
T Consensus         9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34455566666666666666666666666666666666665554

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=81.99  E-value=11  Score=24.23  Aligned_cols=50  Identities=14%  Similarity=0.104  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 031890           95 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAET  144 (151)
Q Consensus        95 ~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~~  144 (151)
                      +++-+.-|..|+...++.++.|++.+..-..+|..+...++.+..-.++.
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~   51 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL   51 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46778888999999999999999999999999999988887776655443

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK02793 phi X174 lysis protein; Provisional

Probab=80.15  E-value=14  Score=24.13  Aligned_cols=40  Identities=13%  Similarity=0.217  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031890           99 LKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL  138 (151)
Q Consensus        99 ~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~  138 (151)
                      ..|.++-++.|++.+-..++.|..++.+++.+...+..+.
T Consensus        17 lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   56 (72)
T PRK02793         17 LAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ   56 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344444444444444444455555555555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	6e-18
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	3e-15

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii} Length = 151

 Score = 74.7 bits (183), Expect = 6e-18
 Identities = 28/143 (19%), Positives = 63/143 (44%), Gaps = 1/143 (0%)

Query: 6   QEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNL 65
            ++++K      + L+          + +   +     +R+ +ENL+K        LV +
Sbjct: 8   NKELEKLAYEY-QVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPI 66

Query: 66  GSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKA 125
           G+  +++  + D  +  V +G G+ VE +  EA+ F+ +R  +    I +    +A ++ 
Sbjct: 67  GAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEK 126

Query: 126 QIKLVCEGICELLQLPAETSVQE 148
           +I  V     E+ Q  + TS + 
Sbjct: 127 RIGEVARKAQEVQQKQSMTSFKV 149

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 Length = 133

 Score = 66.9 bits (163), Expect = 3e-15
 Identities = 18/122 (14%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 18  RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPD 77
              +  +     + + V         L K + +++        TLV +G+  +++A++ D
Sbjct: 11  NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKD--GSETLVPVGAGSFIKAELKD 68

Query: 78  TQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137
           T  + + +G G  ++  + +A++ I  +++++   + +    + +I   +  +     EL
Sbjct: 69  TSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128

Query: 138 LQ 139
           L 
Sbjct: 129 LA 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	99.97
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	99.97
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	99.07
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	98.86
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	97.81
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	97.44
3gpv_A	148	Transcriptional regulator, MERR family; protein st	85.08
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	84.92
3rrk_A	357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	82.16

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=99.97  E-value=1.2e-30  Score=189.86  Aligned_cols=128  Identities=14%  Similarity=0.280  Sum_probs=120.6

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecce
Q 031890            9 VQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLG   88 (151)
Q Consensus         9 i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g   88 (151)
                      ++++.... +.|+.+++.+.++++.+...+++|..++++|+.|++  ..+.+++||||+|+|++|+|+|+++|+||||+|
T Consensus         3 ~~~l~~~~-q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~--~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g   79 (133)
T 1fxk_C            3 LAEIVAQL-NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG--KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAG   79 (133)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEEEETTEEEEEECCSTTEEEEEEETT
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCC
Confidence            55666655 899999999999999999999999999999999987  257899999999999999999999999999999


Q ss_pred             eEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890           89 FHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ  139 (151)
Q Consensus        89 ~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~  139 (151)
                      ||||+|.++|++|+++|++.++..++++.+.+.+++++++.+...|+++++
T Consensus        80 ~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~  130 (133)
T 1fxk_C           80 VAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA  130 (133)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999998863

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=99.97  E-value=4.8e-30  Score=190.68  Aligned_cols=136  Identities=17%  Similarity=0.275  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCe
Q 031890            4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKV---FEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQH   80 (151)
Q Consensus         4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l---~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~   80 (151)
                      +.++++.++..+. +.|+.+++.+.++++.+   ...+++|..+.+.|+.+++   .+.+++||||+++|++|+|+|+++
T Consensus         6 ~~~~~l~ql~~~~-qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~---~~~~ilvplg~~~yv~g~i~~~~~   81 (151)
T 2zdi_C            6 QNNKELEKLAYEY-QVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE---EKPEILVPIGAGSFLKGVIVDKNN   81 (151)
T ss_dssp             SSTTHHHHHHHHH-HHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC---SSCEEEEECSSSCEEEEECSCTTE
T ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCceEEEEcCCCeEEEEEECCCCE
Confidence            4566788999988 99999999999999999   7777777777777766653   478999999999999999999999


Q ss_pred             eEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 031890           81 IFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE  143 (151)
Q Consensus        81 V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~  143 (151)
                      |+||||+|||||+|+++|++|+++|++.++..++++.+.+.+++++++.++..|+++++..+.
T Consensus        82 V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~  144 (151)
T 2zdi_C           82 AIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSM  144 (151)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred             EEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999886655

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=99.07  E-value=2.5e-08  Score=69.88  Aligned_cols=98  Identities=14%  Similarity=0.183  Sum_probs=84.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE   97 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e   97 (151)
                      ..|+.++..+..++..+..++.++..+.+.|+.+++    +..++.++|                     |+||+.+.++
T Consensus        16 ~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~----d~~vy~~iG---------------------~vfv~~~~~e   70 (117)
T 2zqm_A           16 ESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPD----DAVVYKTVG---------------------TLIVKTTKDK   70 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT----TCCEEEEET---------------------TEEEEECHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CcHhHHHhh---------------------HHHhhccHHH
Confidence            567889999999999999999998777777766643    234666666                     9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 031890           98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL  140 (151)
Q Consensus        98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l  140 (151)
                      |...|++|++.++..++.+.+.+..+...+..+...++++.+=
T Consensus        71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~  113 (117)
T 2zqm_A           71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP  113 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999988753

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=98.86  E-value=2.2e-07  Score=64.08  Aligned_cols=95  Identities=8%  Similarity=0.077  Sum_probs=81.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEecceeEEeecHHH
Q 031890           18 RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSE   97 (151)
Q Consensus        18 ~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~~vE~t~~e   97 (151)
                      ..|+.++..+..++..+..++.++..+.+.|+.+++    +..++.++|                     |+||+.+.++
T Consensus        11 ~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~----d~~vy~~iG---------------------~vfv~~~~~e   65 (107)
T 1fxk_A           11 QQLQQQAQAISVQKQTVEMQINETQKALEELSRAAD----DAEVYKSSG---------------------NILIRVAKDE   65 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT----TCCEEEEET---------------------TEEEEECHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CchHHHHHh---------------------HHHHhccHHH
Confidence            567889999999999999999998777777766643    234666666                     8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           98 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL  137 (151)
Q Consensus        98 A~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l  137 (151)
                      |...+++|++.++..++.+.+.+..+...+..+...+.++
T Consensus        66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~  105 (107)
T 1fxk_A           66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA  105 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988777653

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=97.81  E-value=0.00017  Score=51.32  Aligned_cols=116  Identities=11%  Similarity=0.153  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhc---------CCCCceEEEecCCeeeEe
Q 031890            4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRK--NIENLEKN---------SVTSLRTLVNLGSEVYMQ   72 (151)
Q Consensus         4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~--~i~~l~~~---------~~~~~e~lVplg~~~fv~   72 (151)
                      +......+|+.-+ +.|...+..+...+..+...++.+..+..  ..+.+-+-         -....+++|++|+|+|+.
T Consensus         5 ~l~~~~q~l~~~~-~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE   83 (133)
T 1fxk_C            5 EIVAQLNIYQSQV-ELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIK   83 (133)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEE
Confidence            5566778888866 99999999999999999999998887763  22211110         023457999999999999


Q ss_pred             EEeCCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           73 ADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEG  133 (151)
Q Consensus        73 a~i~~~~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~  133 (151)
                      -.+.+.-             .-+++=+++++++++.+++.+..++..+..+...++..+..
T Consensus        84 ~~~~eA~-------------~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~  131 (133)
T 1fxk_C           84 KNFEDAM-------------ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA  131 (133)
T ss_dssp             EEHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9988743             23677889999999999999999999999999999887653

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=97.44  E-value=0.00017  Score=52.63  Aligned_cols=116  Identities=16%  Similarity=0.134  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHhhhcC---------CCCceEEEecCCeeeEe
Q 031890            6 QEKVQKFEEFVDRRLKPDLTRA---IAERDKVFEQQKIFSDLR-KNIENLEKNS---------VTSLRTLVNLGSEVYMQ   72 (151)
Q Consensus         6 ~~~i~~~e~f~~~~L~~dL~~l---~~~~~~l~~~i~e~~~lk-~~i~~l~~~~---------~~~~e~lVplg~~~fv~   72 (151)
                      .....+|+.-+ +.|...+..+   ..++..+...++.+..+. +..+.+-..+         ....+++|+||+|+||.
T Consensus        15 ~~~~qql~~~~-~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE   93 (151)
T 2zdi_C           15 AYEYQVLQAQA-QILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVE   93 (151)
T ss_dssp             HHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEE
Confidence            33455555544 8888899999   888888888888876665 3333332211         13457999999999999


Q ss_pred             EEeCCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           73 ADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGIC  135 (151)
Q Consensus        73 a~i~~~~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~  135 (151)
                      -.+.+.-             .-++.=+++++++++.+++.+..++..+..+...+..+...++
T Consensus        94 ~~~~eA~-------------~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~  143 (151)
T 2zdi_C           94 RSIDEAI-------------SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS  143 (151)
T ss_dssp             EEHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred             ecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888742             3477788999999999999999999999999999888775544

>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}

Probab=85.08  E-value=3.3  Score=29.39  Aligned_cols=52  Identities=15%  Similarity=0.200  Sum_probs=33.1

Q ss_pred             ecHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 031890           93 FTWSEALKFIS----------QREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAET  144 (151)
Q Consensus        93 ~t~~eA~~~l~----------~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~l~~~~  144 (151)
                      +|+++...+++          .+...|...++.+..++..++..+..+...+........++
T Consensus        74 ~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~  135 (148)
T 3gpv_A           74 MPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSA  135 (148)
T ss_dssp             CCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            36777777776          45567777777777777777777777777777777666555

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=84.92  E-value=3.1  Score=26.20  Aligned_cols=48  Identities=8%  Similarity=0.056  Sum_probs=37.4

Q ss_pred             EEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           90 HVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL  137 (151)
Q Consensus        90 ~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l  137 (151)
                      .+.++..||..++..+++.+......-...+...+..|..+-..|+.|
T Consensus        21 ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L   68 (77)
T 3trt_A           21 VAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSL   68 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            345678999999999999999988888777777777776666555544

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}

Probab=82.16  E-value=17  Score=28.85  Aligned_cols=33  Identities=9%  Similarity=0.122  Sum_probs=28.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           94 TWSEALKFISQREDKIARQIDEYTRLIASIKAQ  126 (151)
Q Consensus        94 t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~  126 (151)
                      +..+++.-++.++..++..++.+.+.+..+...
T Consensus       223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~  255 (357)
T 3rrk_A          223 PLGKAAARMKERARLAPEELVGIREEVARLSRE  255 (357)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777888899999999999998888888888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1fxkc_	133	a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Met	2e-12

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 133

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 58.4 bits (141), Expect = 2e-12
 Identities = 18/122 (14%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 18  RRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPD 77
              +  +     + + V         L K + +++        TLV +G+  +++A++ D
Sbjct: 11  NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKD--GSETLVPVGAGSFIKAELKD 68

Query: 78  TQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 137
           T  + + +G G  ++  + +A++ I  +++++   + +    + +I   +  +     EL
Sbjct: 69  TSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128

Query: 138 LQ 139
           L 
Sbjct: 129 LA 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	99.96
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	98.26
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	97.9
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	90.22

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.96  E-value=8.5e-29  Score=178.16  Aligned_cols=127  Identities=14%  Similarity=0.284  Sum_probs=117.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEEeccee
Q 031890           10 QKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGF   89 (151)
Q Consensus        10 ~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~vG~g~   89 (151)
                      .++..-+ +.|+.+++.+++++..++..+++|..++++|+.+++.  .+.+++||+|+|+|++|+|.++++|+|+||+||
T Consensus         4 ~eL~~~~-~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~--~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~   80 (133)
T d1fxkc_           4 AEIVAQL-NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGK--DGSETLVPVGAGSFIKAELKDTSEVIMSVGAGV   80 (133)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--TTCEEEEEEETTEEEEEECCSTTEEEEEEETTE
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCeEEEEcCCceEEEEEecCCCceEEEecCCe
Confidence            3444433 7889999999999999999999999999999999865  477999999999999999999999999999999


Q ss_pred             EEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031890           90 HVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ  139 (151)
Q Consensus        90 ~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l~~  139 (151)
                      |||+|+++|.+|+++|++.+++.++++.+++..+++++..+...++++..
T Consensus        81 ~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~  130 (133)
T d1fxkc_          81 AIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA  130 (133)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988753

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.26  E-value=5.9e-05  Score=50.49  Aligned_cols=103  Identities=10%  Similarity=0.140  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEEE
Q 031890            5 RQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVD   84 (151)
Q Consensus         5 ~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V~   84 (151)
                      +++.+.+|     +.|+.+++.+..++..+..++.+.....+.|+.+++                        ..+|+=.
T Consensus         3 lqe~~~~~-----q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~------------------------d~~vyk~   53 (107)
T d1fxka_           3 VQHQLAQF-----QQLQQQAQAISVQKQTVEMQINETQKALEELSRAAD------------------------DAEVYKS   53 (107)
T ss_dssp             HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT------------------------TCCEEEE
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc------------------------ccHHHHH
Confidence            34445554     456889999999999999999987666666655542                        2233334


Q ss_pred             ecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           85 IGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL  137 (151)
Q Consensus        85 vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i~~l  137 (151)
                      || |++|+.+.++|..-+.+|++.++..++.+.+.+..+...+..+...++.+
T Consensus        54 vG-~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~  105 (107)
T d1fxka_          54 SG-NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA  105 (107)
T ss_dssp             ET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hc-chhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 68899999999999999999999999999999999999999988877653

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.90  E-value=6e-05  Score=51.94  Aligned_cols=116  Identities=10%  Similarity=0.175  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh---------cCCCCceEEEecCCeeeEeE
Q 031890            5 RQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIEN--LEK---------NSVTSLRTLVNLGSEVYMQA   73 (151)
Q Consensus         5 ~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~--l~~---------~~~~~~e~lVplg~~~fv~a   73 (151)
                      +...+..|+.-+ +.|.+++..+...+..+...+..+..+.+.-..  +-+         .-....+++|++|+|+|+.-
T Consensus         6 L~~~~~~l~~~l-~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE~   84 (133)
T d1fxkc_           6 IVAQLNIYQSQV-ELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKK   84 (133)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeeeee
Confidence            444566666666 889999999999999999888887777643211  100         01235689999999999999


Q ss_pred             EeCCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           74 DVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI  134 (151)
Q Consensus        74 ~i~~~~~V~V~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~~~~~i  134 (151)
                      .+.+.-+             -++.=++.+++.++.+.+.++++...+..+...+..+..++
T Consensus        85 ~~~eA~~-------------~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~  132 (133)
T d1fxkc_          85 NFEDAME-------------SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV  132 (133)
T ss_dssp             EHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9887532             25666889999999999999999999999999998887665

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.22  E-value=1.3  Score=28.17  Aligned_cols=100  Identities=11%  Similarity=0.175  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCeeeEeEEeCCCCeeEE
Q 031890            4 YRQEKVQKFEEFVDRRLKPDLTRAIAERDKVFEQQKIFSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFV   83 (151)
Q Consensus         4 ~~~~~i~~~e~f~~~~L~~dL~~l~~~~~~l~~~i~e~~~lk~~i~~l~~~~~~~~e~lVplg~~~fv~a~i~~~~~V~V   83 (151)
                      +...++..+..=+ +.+..++..+...+......+.++..+...-..+..            -+++||+..+.+      
T Consensus         5 e~~~~~q~lq~el-~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~------------vG~vLv~~~~~e------   65 (107)
T d1fxka_           5 HQLAQFQQLQQQA-QAISVQKQTVEMQINETQKALEELSRAADDAEVYKS------------SGNILIRVAKDE------   65 (107)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEE------------ETTEEEEECHHH------
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHH------------hcchhhcCcHHH------
Confidence            3445666676655 778888999999999999999887766543323321            235666655443      


Q ss_pred             EecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031890           84 DIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKL  129 (151)
Q Consensus        84 ~vG~g~~vE~t~~eA~~~l~~ri~~L~~~~~~l~~~l~~i~~~i~~  129 (151)
                             +--++.+-.++++.+++.|++++..+.+++.+++..+..
T Consensus        66 -------~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~  104 (107)
T d1fxka_          66 -------LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   234678899999999999999999999999999998864