Citrus Sinensis ID: 031897

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE
cccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHccccccccccccccc
ccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHcccccccccEcccccHHHHHHHcHHHHHccEEEEcc
MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFlkasqvtdnpqgdfrSMFRhiskggwtfsnkdhgwqvsdcTAEALLCCLhfsmmrpeivgekmeperfYDAVNCILSLqsetggvpaweptgapswlellnpiefLDKVIIEHE
MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE
MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE
******QTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVII***
*QSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE
********WDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE
***FGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query151 2.2.26 [Sep-21-2011]
E2IUA6 779 Taraxerol synthase OS=Kal N/A no 1.0 0.193 0.721 8e-63
A8C980 759 Germanicol synthase OS=Rh N/A no 1.0 0.198 0.728 8e-63
A8CDT2 759 Beta-amyrin synthase OS=B N/A no 1.0 0.198 0.721 5e-62
E2IUA9 765 Lupeol synthase OS=Kalanc N/A no 1.0 0.197 0.695 5e-62
Q8W3Z1 779 Beta-amyrin synthase OS=B N/A no 1.0 0.193 0.721 2e-61
Q9LRH7 764 Mixed-amyrin synthase OS= N/A no 1.0 0.197 0.695 2e-61
Q9MB42 765 Beta-amyrin synthase OS=G N/A no 1.0 0.197 0.701 2e-61
A8CDT3 761 Lupeol synthase OS=Brugui N/A no 1.0 0.198 0.695 6e-60
Q2XPU7 769 Lupeol synthase OS=Ricinu N/A no 1.0 0.196 0.695 7e-60
O82140 763 Beta-Amyrin Synthase 1 OS N/A no 1.0 0.197 0.688 2e-59
>sp|E2IUA6|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function desciption
 Score =  238 bits (608), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 123/151 (81%)

Query: 1   MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISK 60
           MQSFGSQ WD   AIQALLA N++DEIG  L K HDF+K SQV DNP GDF+SM RHISK
Sbjct: 429 MQSFGSQQWDTGFAIQALLASNMSDEIGETLAKGHDFVKKSQVKDNPSGDFKSMHRHISK 488

Query: 61  GGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETG 120
           G WTFS++DHGWQVSDCTAE L CCL FS+M PE+VGEKMEPER YD+VN +LSLQS+ G
Sbjct: 489 GSWTFSDQDHGWQVSDCTAEGLKCCLLFSLMPPELVGEKMEPERLYDSVNILLSLQSKNG 548

Query: 121 GVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151
           G+ AWEP GAP WLELLNP EF   ++IEHE
Sbjct: 549 GLAAWEPAGAPEWLELLNPTEFFADIVIEHE 579
Oxidosqualene cyclase that generates taraxerol, a triterpenoid product. Taraxerol is probably required to coat the leaf exterior as a defense compound against pathogens or herbivores.
Kalanchoe daigremontiana (taxid: 23013)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 5
>sp|A8C980|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1 Back     alignment and function description
>sp|A8CDT2|BAS_BRUGY Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1 Back     alignment and function description
>sp|E2IUA9|LUPS_KALDA Lupeol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q8W3Z1|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1 Back     alignment and function description
>sp|Q9LRH7|ABAMS_PEA Mixed-amyrin synthase OS=Pisum sativum GN=OSCPSM PE=1 SV=1 Back     alignment and function description
>sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1 Back     alignment and function description
>sp|A8CDT3|LUPS_BRUGY Lupeol synthase OS=Bruguiera gymnorhiza GN=LUS PE=1 SV=1 Back     alignment and function description
>sp|Q2XPU7|LUPS_RICCO Lupeol synthase OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
403377890 779 RecName: Full=Taraxerol synthase; Short= 1.0 0.193 0.721 5e-61
353558864 759 RecName: Full=Germanicol synthase; Short 1.0 0.198 0.728 5e-61
297735708 512 unnamed protein product [Vitis vinifera] 1.0 0.294 0.715 5e-61
297735720 846 unnamed protein product [Vitis vinifera] 1.0 0.178 0.715 8e-61
147839872 729 hypothetical protein VITISV_001242 [Viti 1.0 0.207 0.715 9e-61
225443446 757 PREDICTED: beta-amyrin synthase [Vitis v 1.0 0.199 0.715 1e-60
297735695 885 unnamed protein product [Vitis vinifera] 0.993 0.169 0.708 1e-60
224122726 762 predicted protein [Populus trichocarpa] 1.0 0.198 0.708 1e-60
359483263 773 PREDICTED: beta-amyrin synthase-like [Vi 1.0 0.195 0.708 1e-60
147780749 664 hypothetical protein VITISV_012054 [Viti 1.0 0.227 0.701 2e-60
>gi|403377890|sp|E2IUA6.1|TARS_KALDA RecName: Full=Taraxerol synthase; Short=KdTAS gi|300807974|gb|ADK35123.1| taraxerol synthase [Kalanchoe daigremontiana] Back     alignment and taxonomy information
 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 123/151 (81%)

Query: 1   MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISK 60
           MQSFGSQ WD   AIQALLA N++DEIG  L K HDF+K SQV DNP GDF+SM RHISK
Sbjct: 429 MQSFGSQQWDTGFAIQALLASNMSDEIGETLAKGHDFVKKSQVKDNPSGDFKSMHRHISK 488

Query: 61  GGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETG 120
           G WTFS++DHGWQVSDCTAE L CCL FS+M PE+VGEKMEPER YD+VN +LSLQS+ G
Sbjct: 489 GSWTFSDQDHGWQVSDCTAEGLKCCLLFSLMPPELVGEKMEPERLYDSVNILLSLQSKNG 548

Query: 121 GVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151
           G+ AWEP GAP WLELLNP EF   ++IEHE
Sbjct: 549 GLAAWEPAGAPEWLELLNPTEFFADIVIEHE 579

Source: Kalanchoe daigremontiana

Species: Kalanchoe daigremontiana

Genus: Kalanchoe

Family: Crassulaceae

Order: Saxifragales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|353558864|sp|A8C980.1|GERS_RHISY RecName: Full=Germanicol synthase; Short=RsM1 gi|157679387|dbj|BAF80441.1| multifunctional triterpene synthase [Rhizophora stylosa] Back     alignment and taxonomy information
>gi|297735708|emb|CBI18395.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735720|emb|CBI18407.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147839872|emb|CAN65909.1| hypothetical protein VITISV_001242 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225443446|ref|XP_002270934.1| PREDICTED: beta-amyrin synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735695|emb|CBI18382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224122726|ref|XP_002330453.1| predicted protein [Populus trichocarpa] gi|222871865|gb|EEF08996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483263|ref|XP_002269328.2| PREDICTED: beta-amyrin synthase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147780749|emb|CAN60316.1| hypothetical protein VITISV_012054 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
UNIPROTKB|E2IUA6 779 E2IUA6 "Taraxerol synthase" [K 1.0 0.193 0.721 3.5e-59
UNIPROTKB|A8CDT2 759 BAS "Beta-amyrin synthase" [Br 1.0 0.198 0.721 9.3e-59
UNIPROTKB|E2IUA9 765 E2IUA9 "Lupeol synthase" [Kala 1.0 0.197 0.695 1.9e-58
UNIPROTKB|Q9LRH7 764 OSCPSM "Mixed-amyrin synthase" 1.0 0.197 0.695 1.9e-58
UNIPROTKB|Q8W3Z1 779 OSCBPY "Beta-amyrin synthase" 1.0 0.193 0.721 3.2e-58
UNIPROTKB|A8CDT3 761 LUS "Lupeol synthase" [Bruguie 1.0 0.198 0.695 7.5e-57
UNIPROTKB|Q2XPU7 769 Q2XPU7 "Lupeol synthase" [Rici 1.0 0.196 0.695 7.5e-57
UNIPROTKB|F8WQD0 761 SHS1 "Shionone synthase" [Aste 1.0 0.198 0.668 1.1e-55
UNIPROTKB|E2IUA8 767 E2IUA8 "Friedelin synthase" [K 1.0 0.196 0.668 1.4e-55
UNIPROTKB|E2IUA7 767 E2IUA7 "Glutinol synthase" [Ka 1.0 0.196 0.655 1.6e-54
UNIPROTKB|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 109/151 (72%), Positives = 123/151 (81%)

Query:     1 MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISK 60
             MQSFGSQ WD   AIQALLA N++DEIG  L K HDF+K SQV DNP GDF+SM RHISK
Sbjct:   429 MQSFGSQQWDTGFAIQALLASNMSDEIGETLAKGHDFVKKSQVKDNPSGDFKSMHRHISK 488

Query:    61 GGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETG 120
             G WTFS++DHGWQVSDCTAE L CCL FS+M PE+VGEKMEPER YD+VN +LSLQS+ G
Sbjct:   489 GSWTFSDQDHGWQVSDCTAEGLKCCLLFSLMPPELVGEKMEPERLYDSVNILLSLQSKNG 548

Query:   121 GVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151
             G+ AWEP GAP WLELLNP EF   ++IEHE
Sbjct:   549 GLAAWEPAGAPEWLELLNPTEFFADIVIEHE 579
GO:0016104 "triterpenoid biosynthetic process" evidence=IDA
GO:0016866 "intramolecular transferase activity" evidence=IDA
UNIPROTKB|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|Q9LRH7 OSCPSM "Mixed-amyrin synthase" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
UNIPROTKB|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
UNIPROTKB|A8CDT3 LUS "Lupeol synthase" [Bruguiera gymnorhiza (taxid:39984)] Back     alignment and assigned GO terms
UNIPROTKB|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
UNIPROTKB|F8WQD0 SHS1 "Shionone synthase" [Aster tataricus (taxid:588669)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA8 E2IUA8 "Friedelin synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA7 E2IUA7 "Glutinol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.4.99LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029694001
SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (710 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00035514001
SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (169 aa)
  •     0.505
GSVIVG00032384001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (133 aa)
  •     0.499

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
PLN02993 763 PLN02993, PLN02993, lupeol synthase 2e-75
PLN03012 759 PLN03012, PLN03012, Camelliol C synthase 1e-72
cd02892 634 cd02892, SQCY_1, Squalene cyclase (SQCY) domain su 5e-64
cd02889 348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 1e-55
TIGR01787 621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 3e-47
TIGR03463 634 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase 3e-30
COG1657 517 COG1657, SqhC, Squalene cyclase [Lipid metabolism] 4e-13
cd00688 300 cd00688, ISOPREN_C2_like, This group contains clas 1e-12
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 4e-05
TIGR01507 635 TIGR01507, hopene_cyclase, squalene-hopene cyclase 6e-04
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase Back     alignment and domain information 
 Score =  238 bits (609), Expect = 2e-75
 Identities = 93/151 (61%), Positives = 117/151 (77%)

Query: 1   MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISK 60
           MQSFGSQ WD   AIQALLA +L+DE   +L + H+++K SQV +NP GDF+SM+RHISK
Sbjct: 411 MQSFGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISK 470

Query: 61  GGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETG 120
           G WT S++DHGWQVSDCTAEAL CC+  SMM  ++VG+K++PE+ YD+VN +LSLQSE G
Sbjct: 471 GAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENG 530

Query: 121 GVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151
           GV AWEP  A  WLELLNP +F    ++E E
Sbjct: 531 GVTAWEPVRAYKWLELLNPTDFFANTMVERE 561

Length = 763
>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase Back     alignment and domain information
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase Back     alignment and domain information
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 151
PLN02993 763 lupeol synthase 100.0
PLN03012 759 Camelliol C synthase 100.0
TIGR03463 634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 100.0
TIGR01787 621 squalene_cyclas squalene/oxidosqualene cyclases. T 100.0
KOG0497 760 consensus Oxidosqualene-lanosterol cyclase and rel 100.0
TIGR01507 635 hopene_cyclase squalene-hopene cyclase. SHC is an 100.0
cd02892 634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.98
cd02889 348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.86
COG1657 517 SqhC Squalene cyclase [Lipid metabolism] 99.79
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.65
PLN03012759 Camelliol C synthase 99.64
TIGR01507 635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.62
PLN02993763 lupeol synthase 99.61
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.51
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.51
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.39
cd00688 300 ISOPREN_C2_like This group contains class II terpe 99.39
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.36
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.33
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.27
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.25
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.23
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.21
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.04
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 98.97
cd02897 292 A2M_2 Proteins similar to alpha2-macroglobulin (al 98.88
TIGR02474 290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 98.8
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 98.75
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 98.71
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 98.71
cd02891 282 A2M_like Proteins similar to alpha2-macroglobulin 98.7
cd02890 286 PTase Protein prenyltransferase (PTase) domain, be 98.68
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 98.5
TIGR02474 290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 98.45
PF07678246 A2M_comp: A-macroglobulin complement component; In 98.17
cd02893 299 FTase Protein farnesyltransferase (FTase)_like pro 98.16
cd02893 299 FTase Protein farnesyltransferase (FTase)_like pro 98.15
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 98.15
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 98.14
PLN03201 316 RAB geranylgeranyl transferase beta-subunit; Provi 97.92
PLN03201 316 RAB geranylgeranyl transferase beta-subunit; Provi 97.9
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 97.89
cd02895 307 GGTase-I Geranylgeranyltransferase types I (GGTase 97.8
PF07678246 A2M_comp: A-macroglobulin complement component; In 97.73
PLN02710 439 farnesyltranstransferase subunit beta 97.58
PF09492 289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 97.56
PLN02710 439 farnesyltranstransferase subunit beta 97.56
PF09492 289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 97.52
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 97.08
KOG0365 423 consensus Beta subunit of farnesyltransferase [Pos 96.99
COG5029 342 CAL1 Prenyltransferase, beta subunit [Posttranslat 96.87
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 96.74
COG1689274 Uncharacterized protein conserved in archaea [Func 96.62
PLN02592 800 ent-copalyl diphosphate synthase 96.46
KOG0366 329 consensus Protein geranylgeranyltransferase type I 96.12
KOG0367347 consensus Protein geranylgeranyltransferase Type I 95.44
TIGR01577 616 oligosac_amyl oligosaccharide amylase. The name of 95.36
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 95.26
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 94.83
TIGR01535 648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 94.1
PLN02279 784 ent-kaur-16-ene synthase 93.97
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 93.86
KOG0366 329 consensus Protein geranylgeranyltransferase type I 93.44
cd00249 384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 93.0
COG1689 274 Uncharacterized protein conserved in archaea [Func 91.21
PLN02592 800 ent-copalyl diphosphate synthase 90.53
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 89.61
TIGR01535 648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 89.55
TIGR01577 616 oligosac_amyl oligosaccharide amylase. The name of 88.42
PLN02279 784 ent-kaur-16-ene synthase 88.37
KOG0365 423 consensus Beta subunit of farnesyltransferase [Pos 86.1
PF07221 346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 85.97
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 83.67
>PLN02993 lupeol synthase Back     alignment and domain information 
Probab=100.00  E-value=1.8e-45  Score=331.01  Aligned_cols=151  Identities=62%  Similarity=1.137  Sum_probs=143.2

Q ss_pred             CCcCCCChhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccchHH
Q 031897            1 MQSFGSQTWDCALAIQALLACNLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDCTAE   80 (151)
Q Consensus         1 ~q~~~~~~wdTala~~AL~~~G~~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~   80 (151)
                      ||+|+||+|||||+++||+++|+.+++++.|+||++||+++|+.++++|+|.++||+.++|||+||+.+++|||+||||+
T Consensus       411 ~q~~gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe  490 (763)
T PLN02993        411 MQSFGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAE  490 (763)
T ss_pred             EcCCCCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHH
Confidence            79999999999999999999999766799999999999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhccccccC
Q 031897           81 ALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE  151 (151)
Q Consensus        81 al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~~  151 (151)
                      +|+|++++.+.+.+.+|.++..+++++||+||++|||+||||++||++|+..|||+|||+|+||++|+||+
T Consensus       491 ~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~  561 (763)
T PLN02993        491 ALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVERE  561 (763)
T ss_pred             HHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCC
Confidence            99998888777655567778889999999999999999999999999999999999999999999999996

>PLN03012 Camelliol C synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
1w6j_A 732 Structure Of Human Osc In Complex With Ro 48-8071 L 3e-25
1w6k_A 732 Structure Of Human Osc In Complex With Lanosterol L 3e-25
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 5   GSQTWDCALAIQALLAC--NLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGG 62
           GSQ WD A AIQALL    +   E    L KAH+FL+ SQV DNP  D++  +R + KGG
Sbjct: 383 GSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPP-DYQKYYRQMRKGG 441
Query: 63  WTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGV 122
           ++FS  D GW VSDCTAEAL   L      P +  E +  ER  DAV  +L++++  GG 
Sbjct: 442 FSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVT-EHIPRERLCDAVAVLLNMRNPDGGF 500
Query: 123 PAWEPTGAPSWLELLNPIEFLDKVIIEH 150
             +E       LELLNP E    ++I++
Sbjct: 501 ATYETKRGGHLLELLNPSEVFGDIMIDY 528
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 1e-41
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 1e-33
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure
 Score =  146 bits (368), Expect = 1e-41
 Identities = 64/153 (41%), Positives = 86/153 (56%), Gaps = 4/153 (2%)

Query: 1   MQSFGSQTWDCALAIQALLAC--NLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHI 58
             + GSQ WD A AIQALL    +   E    L KAH+FL+ SQV DNP  D++  +R +
Sbjct: 379 QGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNP-PDYQKYYRQM 437

Query: 59  SKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSE 118
            KGG++FS  D GW VSDCTAEAL   L      P +  E +  ER  DAV  +L++++ 
Sbjct: 438 RKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHV-TEHIPRERLCDAVAVLLNMRNP 496

Query: 119 TGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151
            GG   +E       LELLNP E    ++I++ 
Sbjct: 497 DGGFATYETKRGGHLLELLNPSEVFGDIMIDYT 529
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query151
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 99.97
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.95
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.58
1r76_A 408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.51
1gxm_A 332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.5
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.31
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.1
1gxm_A 332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.06
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.02
1r76_A 408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.01
1n4q_B 377 Geranyltransferase type-I beta subunit; protein ge 98.96
3dss_B 331 Geranylgeranyl transferase type-2 subunit beta; pr 98.91
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 98.86
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 98.81
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 98.76
2wy7_A310 Complement C3D fragment; immune system, immune res 98.72
1hzf_A 367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.71
1qqf_A 277 Protein (complement C3DG); alpha-alpha barrel, imm 98.56
1hzf_A 367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.54
2wy7_A 310 Complement C3D fragment; immune system, immune res 98.52
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 98.44
1n4q_B 377 Geranyltransferase type-I beta subunit; protein ge 98.42
2bb6_A 414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.4
2bb6_A 414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.26
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 98.26
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 98.02
2hr0_B 915 Complement C3 alpha' chain; complement component C 97.97
2pmv_A 399 Gastric intrinsic factor; cobalamin transport prot 97.94
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 97.87
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 97.83
2hr0_B 915 Complement C3 alpha' chain; complement component C 97.73
2pmv_A 399 Gastric intrinsic factor; cobalamin transport prot 97.6
3dra_B 390 Geranylgeranyltransferase type I beta subunit; ger 97.05
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 96.67
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 96.56
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 96.41
3prx_B 1642 Cobra venom factor; immune system, complement, imm 96.38
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 96.35
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 96.23
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 96.18
3dra_B 390 Geranylgeranyltransferase type I beta subunit; ger 96.16
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 95.91
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 95.55
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 95.34
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 94.99
3prx_B 1642 Cobra venom factor; immune system, complement, imm 94.86
3gt5_A 402 N-acetylglucosamine 2-epimerase; structural genomi 91.93
1ulv_A 1020 Glucodextranase; GH family 15, (alpha-alpha)6-barr 91.63
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 90.51
2gz6_A 388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 90.49
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 90.27
2zbl_A 421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 90.19
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 89.92
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 89.89
3k11_A 445 Putative glycosyl hydrolase; structural genomics, 88.58
3pmm_A382 Putative cytoplasmic protein; structural genomics, 88.25
1lf6_A 684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 88.01
3pmm_A382 Putative cytoplasmic protein; structural genomics, 87.3
1fp3_A 402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 86.88
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 86.17
1nc5_A373 Hypothetical protein YTER; structural genomics, he 85.07
3k11_A445 Putative glycosyl hydrolase; structural genomics, 84.54
2vn4_A 599 Glucoamylase; hydrolase, carbohydrate binding, gly 84.27
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 80.98
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
Probab=99.97  E-value=5.4e-31  Score=237.05  Aligned_cols=148  Identities=45%  Similarity=0.727  Sum_probs=132.1

Q ss_pred             CCcC-CCChhHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccc
Q 031897            1 MQSF-GSQTWDCALAIQALLACNLTD--EIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDC   77 (151)
Q Consensus         1 ~q~~-~~~~wdTala~~AL~~~G~~~--~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~   77 (151)
                      ||+| |+|+|||+|+++||.++|.+.  ++.+.++||++||+++|++++ .|+|...|++.++|||+|++.++++||+|+
T Consensus       378 ~q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~  456 (732)
T 1w6k_A          378 MQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDC  456 (732)
T ss_dssp             ECSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHH
T ss_pred             eCCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCcccc
Confidence            5888 799999999999999999854  368899999999999998753 578878899999999999999999999999


Q ss_pred             hHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhcccccc
Q 031897           78 TAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEH  150 (151)
Q Consensus        78 Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~  150 (151)
                      |+++|++|..+.+..++ .|.++..++++++++||+++||+||||++|+.+++..||+++||+|+|+++|+|+
T Consensus       457 TA~vl~aL~~~~~~~~~-~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~  528 (732)
T 1w6k_A          457 TAEALKAVLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDY  528 (732)
T ss_dssp             HHHHHHHHHHHHHHCTT-CCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCC
T ss_pred             HHHHHHHHHHHhccccc-ccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCC
Confidence            99999999998653211 2456788999999999999999999999999999999999999999999999985
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 151
d1w6ka1 448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 8e-52
d2sqca1 352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 9e-38
d1gxma_ 324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 0.002
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (426), Expect = 8e-52
 Identities = 65/153 (42%), Positives = 86/153 (56%), Gaps = 4/153 (2%)

Query: 1   MQSFGSQTWDCALAIQALLAC--NLTDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHI 58
             + GSQ WD A AIQALL    +   E    L KAH+FL+ SQV DNP  D++  +R +
Sbjct: 95  QGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNP-PDYQKYYRQM 153

Query: 59  SKGGWTFSNKDHGWQVSDCTAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSE 118
            KGG++FS  D GW VSDCTAEAL   L      P  V E +  ER  DAV  +L++++ 
Sbjct: 154 RKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNP 212

Query: 119 TGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE 151
            GG   +E       LELLNP E    ++I++ 
Sbjct: 213 DGGFATYETKRGGHLLELLNPSEVFGDIMIDYT 245
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query151
d1w6ka1 448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d2sqca1 352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.98
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.67
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.62
d1gxma_ 324 Polygalacturonic acid lyase (pectate lyase) {Cellv 99.34
d2sqca2 271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.1
d1r76a_ 408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.83
d1r76a_ 408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.55
d3dssb1 325 Rab geranylgeranyltransferase, beta subunit {Rat ( 98.52
d1gxma_ 324 Polygalacturonic acid lyase (pectate lyase) {Cellv 98.38
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.36
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 98.31
d2h6fb1 401 Protein farnesyltransferase, beta-subunit {Human ( 98.22
d2h6fb1 401 Protein farnesyltransferase, beta-subunit {Human ( 98.18
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 98.06
d1n4qb_ 346 Protein farnesyltransferase, beta-subunit {Rat (Ra 97.89
d1hzfa_ 326 C4adg fragment of complement factor C4a {Human (Ho 97.39
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 97.28
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 96.94
d1ulva1 413 Glucodextranase, domain A {Arthrobacter globiformi 96.9
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 96.77
d1c3da_ 294 C3D, a C3 fragment and ligand for complement recep 96.68
d1lf6a1 397 Bacterial glucoamylase, C-terminal domain {Thermoa 96.51
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 95.97
d1fp3a_ 402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 92.29
d1lf6a1 397 Bacterial glucoamylase, C-terminal domain {Thermoa 89.12
d1ulva1 413 Glucodextranase, domain A {Arthrobacter globiformi 86.21
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 83.87
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 82.36
d1ia6a_ 431 Nonprocessive cellulase Cel9M {Clostridium cellulo 81.63
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 81.43
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 80.57
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-39  Score=277.99  Aligned_cols=149  Identities=44%  Similarity=0.696  Sum_probs=135.4

Q ss_pred             CCcC-CCChhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCccccccCCCCCcccccc
Q 031897            1 MQSF-GSQTWDCALAIQALLACNL--TDEIGPILMKAHDFLKASQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWQVSDC   77 (151)
Q Consensus         1 ~q~~-~~~~wdTala~~AL~~~G~--~~~~~~~i~rA~~~L~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~   77 (151)
                      +|+| +||||||+|+++||+++|.  .+++++.|+||++||+.+|+.++ .|+|.+.+++.++|||+|++.+++|||+||
T Consensus        94 ~~~~~~S~vWDTal~~~AL~~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~n~~~Pd~Dd  172 (448)
T d1w6ka1          94 GQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDC  172 (448)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHH
T ss_pred             cCCCCCCChHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHhhccCcC-CCcchhhcCCCCCCceeCCcCCCCCCCCcc
Confidence            4677 8999999999999999995  34578999999999999999864 589999999999999999999999999999


Q ss_pred             hHHHHHHHHHhccCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhccccccC
Q 031897           78 TAEALLCCLHFSMMRPEIVGEKMEPERFYDAVNCILSLQSETGGVPAWEPTGAPSWLELLNPIEFLDKVIIEHE  151 (151)
Q Consensus        78 Ta~al~aL~~~~~~~~~~~g~~~~~~~l~rav~~Ll~~Qn~dGGW~~~~~~~~~~~l~~~~~~~~f~~~~~d~~  151 (151)
                      ||+||+||+.+.+..+ ..+.++.+++|.+||+||++|||+||||++|+++++..|||++||++.|+++|+|++
T Consensus       173 TA~~l~al~~~~~~~~-~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s  245 (448)
T d1w6ka1         173 TAEALKAVLLLQEKCP-HVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYT  245 (448)
T ss_dssp             HHHHHHHHHHHHHHCT-TCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCC
T ss_pred             HHHHHHHHHHHhccCc-cccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCC
Confidence            9999999998765332 346677899999999999999999999999999999999999999999999999975
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure