Citrus Sinensis ID: 031907

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASFDGHGGQDFFIVILNIL
Secondary Structure (PSIPRED)
cEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHccccccccccccEEEEEccEEEEEEEEccEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccEEEEEEEEEcccEEEEccccccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHHHccccccccEEEEEcccEEEEEEEcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHccEEEEcccccccEEEEEEEcc
Coil and Loop (DISEMBL)
MILAVLFANsegnilverfngvpaeerLHWRSFLVKLGadnlkgvkneELLVASHKSVYIVYTVLGDVsifvvgkdeydELALAEVIFAITSAVKDacgkipterlfldkygkicLCLDEIVWKTLSYttkasfdghggqdFFIVILNIL
Flexible Loop (DISEMBL)
MILAVLFAnsegnilvERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKasfdghggqdFFIVILNIL
Low Complexity Region (SEG)
MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASFDGHGGQDFFIVILNIL
Disordered region (IsUnstruct)
*ILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASFDGHGGQDFFIVILNI*
Disordered Region (DISOPRED)
MILAVLFANSEGNILVERFNGVPAEERLH****************KNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASFDGHGGQDFFIVILNIL
Disordered Region (DISEMBL)
MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASFDGHGGQDFFIVILNIL
Disordered Region (DISPRO)
MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASFDGHGGQDFFIVILNIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASFDGHGGQDFFIVILNIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
255553161	147	conserved hypothetical protein [Ricinus	0.866	0.884	0.930	2e-62
224054422	147	predicted protein [Populus trichocarpa]	0.866	0.884	0.9	4e-61
41393251	884	putative chloroplastic RNA-binding prote	0.873	0.148	0.847	5e-61
225442985	147	PREDICTED: uncharacterized protein LOC10	0.84	0.857	0.912	5e-60
357114648	875	PREDICTED: pentatricopeptide repeat-cont	0.873	0.149	0.824	6e-60
351726776	147	uncharacterized protein LOC100306313 [Gl	0.826	0.843	0.895	1e-59
388494714	147	unknown [Lotus japonicus]	0.826	0.843	0.911	1e-59
351723349	147	uncharacterized protein LOC100305755 [Gl	0.826	0.843	0.903	2e-59
356555439	147	PREDICTED: uncharacterized protein LOC10	0.826	0.843	0.903	8e-59
218194140	147	hypothetical protein OsI_14395 [Oryza sa	0.873	0.891	0.847	1e-58

>gi|255553161|ref|XP_002517623.1| conserved hypothetical protein [Ricinus communis] gi|223543255|gb|EEF44787.1| conserved hypothetical protein [Ricinus communis]

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/130 (93%), Positives = 123/130 (94%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFAN EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI
Sbjct: 1   MILAVLFANVEGNILIERFSGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKD CGK PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDVCGKPPTERLFLDKYGKICLCLDE 120

Query: 121 IVWKTLSYTT 130
           IVWK L   T
Sbjct: 121 IVWKGLLENT 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054422|ref|XP_002298252.1| predicted protein [Populus trichocarpa] gi|118481741|gb|ABK92810.1| unknown [Populus trichocarpa] gi|222845510|gb|EEE83057.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 117/130 (90%), Positives = 122/130 (93%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFAN EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGV+NEELLVASHKSVYI
Sbjct: 1   MILAVLFANVEGNILIERFSGVPAEERLHWRSFLVKLGADNLKGVRNEELLVASHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSIF+VGKDEYDELAL EVIFAITSA+KD CGK PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVSIFIVGKDEYDELALTEVIFAITSALKDVCGKPPTERLFLDKYGKICLCLDE 120

Query: 121 IVWKTLSYTT 130
           IVWK L   T
Sbjct: 121 IVWKGLLENT 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41393251|gb|AAS01974.1| putative chloroplastic RNA-binding protein, with alternative splicing isoforms [Oryza sativa Japonica Group] gi|108712189|gb|ABF99984.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 111/131 (84%), Positives = 122/131 (93%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLF+NS+GNIL+ERF+GVPAEERLHWRSFLVKLGADNLKG KNEELLVASHKSV I
Sbjct: 738 MILAVLFSNSDGNILIERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELLVASHKSVSI 797

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYT++GDV +++VGKDEYDELALAEVIFAITSAVKD CGK PTERLFLDKYG+ICLCLDE
Sbjct: 798 VYTMIGDVCLYIVGKDEYDELALAEVIFAITSAVKDVCGKPPTERLFLDKYGRICLCLDE 857

Query: 121 IVWKTLSYTTK 131
           IVWK L   T+
Sbjct: 858 IVWKGLLENTE 868

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442985|ref|XP_002268544.1| PREDICTED: uncharacterized protein LOC100245686 [Vitis vinifera] gi|297743445|emb|CBI36312.3| unnamed protein product [Vitis vinifera]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/126 (91%), Positives = 120/126 (95%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           M+LAVLFANSEGNILVERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct: 1   MLLAVLFANSEGNILVERFSGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSI+VVGKDEYDELALAEVIF I S+VKD CGK PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALAEVIFVIISSVKDVCGKPPTERLFLDKYGKICLCLDE 120

Query: 121 IVWKTL 126
           IVWK +
Sbjct: 121 IVWKGM 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114648|ref|XP_003559110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Brachypodium distachyon]

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 108/131 (82%), Positives = 122/131 (93%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFANS+GNIL+ERF+GVPAEERLHWRSFLVKLG++NLKG KNEELLVASHKSV I
Sbjct: 729 MILAVLFANSDGNILIERFHGVPAEERLHWRSFLVKLGSENLKGAKNEELLVASHKSVSI 788

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYT++GDV +++VGKDEYDELAL+EVIFA+TSAVKD CGK PTERLFLDKYG+ICLCLDE
Sbjct: 789 VYTMIGDVCLYIVGKDEYDELALSEVIFAVTSAVKDVCGKPPTERLFLDKYGRICLCLDE 848

Query: 121 IVWKTLSYTTK 131
           IVWK L   T+
Sbjct: 849 IVWKGLLENTE 859

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726776|ref|NP_001236882.1| uncharacterized protein LOC100306313 [Glycine max] gi|255628175|gb|ACU14432.1| unknown [Glycine max]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/124 (89%), Positives = 121/124 (97%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           M+LAVLFAN+EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct: 1   MVLAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSI+VVGKDEYDELAL+EVIF ITSAVKD CGK+P+ERLFLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDVCGKLPSERLFLDKYGRICLCLDE 120

Query: 121 IVWK 124
           IVW+
Sbjct: 121 IVWQ 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494714|gb|AFK35423.1| unknown [Lotus japonicus]

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/124 (91%), Positives = 120/124 (96%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFAN+EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct: 1   MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSI+VVGKDEYDELAL+EVIF ITSAVKD CGK PTER+FLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDICGKPPTERVFLDKYGRICLCLDE 120

Query: 121 IVWK 124
           IVWK
Sbjct: 121 IVWK 124

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723349|ref|NP_001236252.1| uncharacterized protein LOC100305755 [Glycine max] gi|255626529|gb|ACU13609.1| unknown [Glycine max]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/124 (90%), Positives = 120/124 (96%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFAN+EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct: 1   MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSI+VVGKDEYDELAL+EVIF ITSAVKD CGK P+ERLFLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDVCGKPPSERLFLDKYGRICLCLDE 120

Query: 121 IVWK 124
           IVW+
Sbjct: 121 IVWQ 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555439|ref|XP_003546039.1| PREDICTED: uncharacterized protein LOC100781055 [Glycine max]

 Score =  231 bits (589), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 112/124 (90%), Positives = 119/124 (95%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFAN EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct: 1   MILAVLFANVEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSI+VVGK+EYDELAL+EVIF ITSAVKD CGK P+ERLFLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKEEYDELALSEVIFVITSAVKDVCGKPPSERLFLDKYGRICLCLDE 120

Query: 121 IVWK 124
           IVWK
Sbjct: 121 IVWK 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218194140|gb|EEC76567.1| hypothetical protein OsI_14395 [Oryza sativa Indica Group] gi|222626199|gb|EEE60331.1| hypothetical protein OsJ_13429 [Oryza sativa Japonica Group]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 122/131 (93%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLF+NS+GNIL+ERF+GVPAEERLHWRSFLVKLGADNLKG KNEELLVASHKSV I
Sbjct: 1   MILAVLFSNSDGNILIERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELLVASHKSVSI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYT++GDV +++VGKDEYDELALAEVIFAITSAVKD CGK PTERLFLDKYG+ICLCLDE
Sbjct: 61  VYTMIGDVCLYIVGKDEYDELALAEVIFAITSAVKDVCGKPPTERLFLDKYGRICLCLDE 120

Query: 121 IVWKTLSYTTK 131
           IVWK L   T+
Sbjct: 121 IVWKGLLENTE 131

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2037713	147	AT1G15370 "AT1G15370" [Arabido	0.866	0.884	0.853	4.2e-56
DICTYBASE|DDB_G0293086	178	copZb "coatomer protein comple	0.786	0.662	0.320	0.00046

TAIR|locus:2037713 AT1G15370 "AT1G15370" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 111/130 (85%), Positives = 119/130 (91%)

Query:     1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
             MILAVLFANS GN+L+ERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct:     1 MILAVLFANSVGNVLIERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query:    61 VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
             VYT+LGDVSIF+VGKDEYDELALAE I+ IT+AVKD CGK PTER+FLDKYG+ICLCLDE
Sbjct:    61 VYTMLGDVSIFLVGKDEYDELALAETIYIITAAVKDVCGKPPTERVFLDKYGRICLCLDE 120

Query:   121 IVWKTLSYTT 130
             IVW  L   T
Sbjct:   121 IVWNGLLENT 130

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0293086 copZb "coatomer protein complex zeta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 99 (39.9 bits), Expect = 0.00046, P = 0.00046
 Identities = 41/128 (32%), Positives = 60/128 (46%)

Query:     2 ILAVLFANSEGNILVERFNGVPAEE--RLHWRSFLVKLGADNLKGVKNEELLVASHKSVY 59
             I A++  ++ G  L   F   P      L  +    KL  +  K   N EL +  +K V 
Sbjct:     8 IKAIIVLDNNGKRLCSCFYDPPGTPITPLTEKDKFEKLIFEKCK-TSNCELEIIDNKVV- 65

Query:    60 IVYTVLGDVSIFVVGKD-EYDELALAEVIFAITSAVKDACGK----IPTERLFLDKYGKI 114
              + +   DV IFVVG     +ELAL +V+  + S  K AC      + T++ FL+ Y  I
Sbjct:    66 -IGSKQSDVWIFVVGNSLNSNELALLDVLNTLISLFKKACATDESIMITKKTFLENYALI 124

Query:   115 CLCLDEIV 122
              L +DEIV
Sbjct:   125 RLYIDEIV 132


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.142   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      150       150   0.00087  104 3  11 22  0.43    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  138 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.98u 0.23s 14.21t   Elapsed:  00:00:01
  Total cpu time:  13.98u 0.23s 14.21t   Elapsed:  00:00:01
  Start:  Fri May 10 06:40:16 2013   End:  Fri May 10 06:40:17 2013

GO:0006810 "transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_I1484 SubName- Full=Putative uncharacterized protein; (148 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
COG5541	187	COG5541, RET3, Vesicle coat complex COPI, zeta sub	4e-04

>gnl|CDD|227828 COG5541, RET3, Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 2   ILAVLFANSEGNILVERFNGVPAEERLHWRSF--------LVKLGADNLKGVKNEELLVA 53
           + A+L  +S+G  +  ++   P     H   F          K  A+     +   L+  
Sbjct: 8   VEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKDRESILMFY 67

Query: 54  SHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGK 113
                 ++   L DV +++V   E +E  L +V   I +A+         +R   + Y +
Sbjct: 68  DR---LVMCKRLDDVLLYIVSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQ 124

Query: 114 ICLCLDEIVWKTLSYTTKA 132
           I L +DE + + +   TK+
Sbjct: 125 IVLLVDETIDEGVILETKS 143

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG3343	175	consensus Vesicle coat complex COPI, zeta subunit	100.0
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	100.0
KOG0936	182	consensus Clathrin adaptor complex, small subunit	100.0
COG5030	152	APS2 Clathrin adaptor complex, small subunit [Intr	100.0
KOG0934	145	consensus Clathrin adaptor complex, small subunit	99.97
KOG0935	143	consensus Clathrin adaptor complex, small subunit	99.96
COG5541	187	RET3 Vesicle coat complex COPI, zeta subunit [Post	99.94
KOG2635	512	consensus Medium subunit of clathrin adaptor compl	99.27
KOG0938	446	consensus Adaptor complexes medium subunit family	98.98
KOG2740	418	consensus Clathrin-associated protein medium chain	98.6
KOG0937	424	consensus Adaptor complexes medium subunit family	98.43
PF15001	189	AP-5_subunit_s1: AP-5 complex subunit sigma-1	98.0
PF08923	119	MAPKK1_Int: Mitogen-activated protein kinase kinas	95.87
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	94.84

>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.7e-39  Score=243.17  Aligned_cols=133  Identities=23%  Similarity=0.285  Sum_probs=123.2

Q ss_pred             eeEEEEEeCCCCEEEEecCCCCHHH-HHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccH
Q 031907            2 ILAVLFANSEGNILVERFNGVPAEE-RLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE   80 (150)
Q Consensus         2 I~avlIln~~G~r~lakyY~~~~~~-~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNE   80 (150)
                      |||++|+|++|+|+++|||++|+.. -+++++|++.++.|++|+  +  .+|..++|.++|||.+-||+|||+|+.+|||
T Consensus         9 vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~kt--~--~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENE   84 (175)
T KOG3343|consen    9 VKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSKT--E--SEILLLDGNTVVYKSVIDLHFYVVGSEEENE   84 (175)
T ss_pred             hheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhcccccc--c--ceeEEecCcEEEEEecccEEEEEecCcchhH
Confidence            7999999999999999999997665 778888999999988774  2  3477788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccccCC
Q 031907           81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFDGHG  138 (150)
Q Consensus        81 L~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~~~~  138 (150)
                      |.|.++++++.+|++.+++++|+|+.++||+|.++|++|||||+|+|+||| .+|++|-
T Consensus        85 l~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~rv  143 (175)
T KOG3343|consen   85 LMLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQRV  143 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999 7888763

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=5.5e-35  Score=218.20  Aligned_cols=131  Identities=26%  Similarity=0.396  Sum_probs=108.3

Q ss_pred             CeeEEEEEeCCCCEEEEecCCC-CHHH-HHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCc
Q 031907            1 MILAVLFANSEGNILVERFNGV-PAEE-RLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEY   78 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~-~~~~-~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~e   78 (150)
                      ||+|++|+|++|+|+++|||++ +.++ ++..++.......   +.++.  ++++.++++++|||+++||+|+++|+++|
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~i~~~~~~~~vy~~~~dl~~~~v~~~~e   75 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSS---RNSKQ--SPIFEHDNYRIVYKRYSDLYFVVVGDENE   75 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHT---SSSSS--TSEEEETTEEEEEEEETTEEEEEEESSTS
T ss_pred             CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHh---ccccc--ceeeecccceeeeEeeccEEEEEEeeccc
Confidence            9999999999999999999976 3333 3444544433332   32223  34888999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccccC
Q 031907           79 DELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFDGH  137 (150)
Q Consensus        79 NEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~~~  137 (150)
                      |||+++++||.++++|+.+|+ ++||+++++|+++++++||||||+|+++||| ..|+++
T Consensus        76 Nel~~~e~l~~~v~~l~~~~~-~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~  134 (141)
T PF01217_consen   76 NELLLLEFLHRLVEVLDDYFG-NVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKR  134 (141)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHS-S-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHH
T ss_pred             chHHHHHHHHHhhhhhhhhhc-cccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHH
Confidence            999999999999999999987 6999999999999999999999999999999 667643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-35  Score=223.08  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=110.8

Q ss_pred             CeeEEEEEeCCCCEEEEecCCC-CHHHHHH-HHHHHHHhhhccCCCCCccce----EEEeeCCeEEEEEEeccEEEEEEe
Q 031907            1 MILAVLFANSEGNILVERFNGV-PAEERLH-WRSFLVKLGADNLKGVKNEEL----LVASHKSVYIVYTVLGDVSIFVVG   74 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~-~~~~~~~-~e~~~~~l~~~~~~~~~~~~~----~i~~~~~~~iVyr~~~dL~~~vVg   74 (150)
                      ||||++|+|++||+|++|||+| |.+.|++ ++...+.+++   |....|+.    ..+-..+.+++||+||+|||..+.
T Consensus         1 MI~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~---R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvv   77 (182)
T KOG0936|consen    1 MIKAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSK---RPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVV   77 (182)
T ss_pred             CeeEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHc---CCchHhhhhccccccCCccceeehheeeeEEEEEEE
Confidence            9999999999999999999999 7776665 4444455554   43334441    122234789999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccc
Q 031907           75 KDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFD  135 (150)
Q Consensus        75 ~~~eNEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~  135 (150)
                      +++||||+++|+||.|||+||+ |+++|||+|+++|+++++.+|+|+|+||+++||+ ..|.
T Consensus        78 D~sEsEL~iLDLIQvfVEtLDk-CF~nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv  138 (182)
T KOG0936|consen   78 DSSESELGILDLIQVFVETLDK-CFENVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIV  138 (182)
T ss_pred             cCCcchhHHHHHHHHHHHHHHH-HHHhhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHH
Confidence            9999999999999999999995 7788999999999999999999999999999999 7764

>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.1e-35  Score=219.47  Aligned_cols=130  Identities=17%  Similarity=0.155  Sum_probs=112.7

Q ss_pred             CeeEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCcc
Q 031907            1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD   79 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~-~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eN   79 (150)
                      |||++||.|++||+|++|||+| +.++|+.+.+.++.+. .+ |.++.|+  ++++.+.++|||+||+|||.++.++++|
T Consensus         1 ~i~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lI-s~-R~~ke~N--~~e~k~~kiVYrrYA~LyF~f~Vd~~dn   76 (152)
T COG5030           1 MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELI-SA-RKPKESN--FIEGKNEKIVYRRYATLYFVFGVDNDDN   76 (152)
T ss_pred             CeEEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHH-Hc-CCchhcc--cccccCcEEEeeecCcEEEEEEEcCCCC
Confidence            8999999999999999999998 6777777777776655 23 4445555  8888899999999999987777777889


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccc
Q 031907           80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFD  135 (150)
Q Consensus        80 EL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~  135 (150)
                      ||+++++||.|||+||+.| ++|||+|+++|+.+++.+|||+|.||.+.|+| ..+-
T Consensus        77 El~iL~lIh~FVE~lDr~F-gnVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl  132 (152)
T COG5030          77 ELIILELIHNFVEILDRFF-GNVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVL  132 (152)
T ss_pred             cchHHHHHHHHHHHHHHHh-ccceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHH
Confidence            9999999999999999755 66999999999999999999999999999999 5554

>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-31  Score=197.75  Aligned_cols=126  Identities=21%  Similarity=0.188  Sum_probs=108.2

Q ss_pred             CeeEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCcc
Q 031907            1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD   79 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~-~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eN   79 (150)
                      ||+++++.++|||.|++|||.+ +..+|+.+++.+.+.+ -+ |.++.|+  +++++++++|||+||+|+|++...+++|
T Consensus         1 mi~f~LlvsrQGk~rL~k~y~~~~~~er~~i~re~i~~~-La-r~pk~cs--fie~kd~kvVyrryasl~f~~~v~~~dN   76 (145)
T KOG0934|consen    1 MIKFFLLVSRQGKTRLQKWYEALSIKERKKIERELIKSV-LA-RKPKMCS--FIEYKDEKVVYRRYASLFFCVGVEDNDN   76 (145)
T ss_pred             CeEEEEEEeccCceehhHHHhhhcHHHHHHHHHHHHHHH-Hh-CCccccc--chhccCceehhhhhhhEEEEEEEecCCc
Confidence            8999999999999999999998 7778877776554322 12 4445555  8999999999999999965554456999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc
Q 031907           80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK  131 (150)
Q Consensus        80 EL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd  131 (150)
                      ||+.+|+||.+||.||++|+ +|||+|+++|+++++.+|||.+.+|-+.|+.
T Consensus        77 EL~~LE~IH~~vE~lDkYFg-~VCELDiiFNfekay~ILde~~~~g~~~e~~  127 (145)
T KOG0934|consen   77 ELAILEFIHNYVELLDKYFG-SVCELDIIFNFEKAYFILDEFLLGGEIQETS  127 (145)
T ss_pred             hhhHHHHHHHHHHHHHHHhc-cceeeEEEEehHhHHHHHHHHhcCcchHhhh
Confidence            99999999999999998875 5999999999999999999999999998887

>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.6e-29  Score=180.27  Aligned_cols=130  Identities=15%  Similarity=0.117  Sum_probs=103.4

Q ss_pred             CeeEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCcc
Q 031907            1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD   79 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~-~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eN   79 (150)
                      ||++++|.|++|++|+||||-| +.++++..++..+++.. . |..+..+ .+......++++|+|++|+|.+..+..+|
T Consensus         1 mi~FILiqNr~Gk~RLak~yv~~dd~ek~~~~~~vh~lvs-~-Rd~K~~~-~~~~~~~~~~~~rryagLyf~~~vd~tDn   77 (143)
T KOG0935|consen    1 MIRFILIQNRAGKTRLAKWYVQFDDDEKQKLIEEVHALVT-V-RDAKHTN-FVEFRNFKIIYRRRYAGLYFCICVDVTDN   77 (143)
T ss_pred             CeEEEEEEccccceeheeeeeccCchHHHHHHHHHHHHHh-h-ccchhhh-heeeeeceEEEEEeeCCEEEEEEEecCCc
Confidence            9999999999999999999988 44555666666666552 2 3222222 13333344666679999977766677999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-ccc
Q 031907           80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASF  134 (150)
Q Consensus        80 EL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I  134 (150)
                      ||+.++.||.|||+||..+ ++|||+|+++|+.||++++|||+-+|.|.||+ +.+
T Consensus        78 elayLe~IHlFVEvLd~fF-~NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~v  132 (143)
T KOG0935|consen   78 ELAYLEHIHLFVEVLDEFF-HNVCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKV  132 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHh-ccccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHH
Confidence            9999999999999999766 56999999999999999999999999999999 443

>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.6e-27  Score=179.56  Aligned_cols=132  Identities=21%  Similarity=0.264  Sum_probs=118.6

Q ss_pred             eeEEEEEeCCCCEEEEecCCCCHHH---------HHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEE
Q 031907            2 ILAVLFANSEGNILVERFNGVPAEE---------RLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFV   72 (150)
Q Consensus         2 I~avlIln~~G~r~lakyY~~~~~~---------~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~v   72 (150)
                      |+|+||+|+||+|+++|||.||+-.         -+..+.+++++++|+|+..  .  .|..+++..++|+++-|+.+|+
T Consensus         8 v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~~--~--~Il~f~d~lV~~k~~~dv~~yi   83 (187)
T COG5541           8 VEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKDR--E--SILMFYDRLVMCKRLDDVLLYI   83 (187)
T ss_pred             eeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcCc--c--ceeeEcceeeeeeeehhEEEEE
Confidence            6899999999999999999996532         2466678889998887752  2  3677889999999999999999


Q ss_pred             EecCCccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccccC
Q 031907           73 VGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFDGH  137 (150)
Q Consensus        73 Vg~~~eNEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~~~  137 (150)
                      |++-+|||..+.+++..+..||..+++...+|+.+.+|||.+++++||.||+|+|+||+ ..|+.+
T Consensus        84 v~~meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~~ia~r  149 (187)
T COG5541          84 VSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADR  149 (187)
T ss_pred             ecccccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChHHHHHh
Confidence            99999999999999999999999999988999999999999999999999999999999 889865

>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=4.1e-11  Score=103.77  Aligned_cols=129  Identities=18%  Similarity=0.234  Sum_probs=113.2

Q ss_pred             CeeEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccH
Q 031907            1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE   80 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNE   80 (150)
                      |+-|..+++++||.++||.|.  ...|.++|.++....+ . .+ ...++.+++.++++.||++...+|+.+|++.+.|-
T Consensus         2 vvlaa~i~t~~Gk~ivsRqf~--~Msr~RIEgLl~aFpk-L-v~-~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNI   76 (512)
T KOG2635|consen    2 VVLAASINTKTGKAIVSRQFR--EMSRSRIEGLLAAFPK-L-VS-AGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNI   76 (512)
T ss_pred             eEEEEEEeecCCceeeehHhH--hhhHHHHHHHHHHhHH-h-hc-cCCCccEEecccEEEEEEecccEEEEEEeccccch
Confidence            467889999999999999887  3567888988877664 2 11 22357899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccc
Q 031907           81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFD  135 (150)
Q Consensus        81 L~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~  135 (150)
                      |..++.|+.|..+...+|.. ++|+.+++|......++||+|.-|+-...+ ++|-
T Consensus        77 leDl~TL~Lfskvipey~~s-lde~eI~~~~FelifAFDEivsLGyre~v~laQik  131 (512)
T KOG2635|consen   77 LEDLETLRLFSKVIPEYCSS-LDEKEILENAFELIFAFDEIVSLGYRENVNLAQIK  131 (512)
T ss_pred             hhHHHHHHHHHHhchhhhhh-hhHHHHHHhhhhhhhccchhhhhcccccccHHHhh
Confidence            99999999999999999965 999999999999999999999999999988 8764

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=6.8e-09  Score=87.97  Aligned_cols=126  Identities=16%  Similarity=0.149  Sum_probs=103.5

Q ss_pred             CeeEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccH
Q 031907            1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE   80 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNE   80 (150)
                      ||-++++.|..|..++.|.|..+.. +...+.|-..+.     .+.+..+++...++...+|-+..+|++..|+.++.|=
T Consensus         1 misglfi~n~rGevlink~fr~dlk-rs~~diFRv~vi-----~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nv   74 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLK-RSIVDIFRVQVI-----NNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANV   74 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhh-hhHHHHHHHhhh-----hccccCCCeeEecceeEEEEeeccEEEEEEecCCCch
Confidence            8999999999999999999976322 122222222222     1123345677788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcccc
Q 031907           81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKAS  133 (150)
Q Consensus        81 L~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd~~  133 (150)
                      .+..+.+--+...+..+++ ...|..+-+|+-.++=.||||+|-|+...|++.
T Consensus        75 a~v~eFl~kl~avm~aYfg-k~~Eeaiknnf~lI~ElLDemld~G~pqnte~~  126 (446)
T KOG0938|consen   75 AAVFEFLYKLDAVMNAYFG-KDREEAIKNNFVLIYELLDEMLDFGIPQNTEPN  126 (446)
T ss_pred             hhHHHHHHHHHHHHHHHhc-ccchhhhhhceEeHHHHHHHHHhcCCCccCChh
Confidence            9999999999999998886 499999999999999999999999999998843

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1.3e-07  Score=80.59  Aligned_cols=124  Identities=16%  Similarity=0.229  Sum_probs=87.6

Q ss_pred             CeeEEEEEeCCCCEEEEecCCC-----CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEec
Q 031907            1 MILAVLFANSEGNILVERFNGV-----PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGK   75 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~-----~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~   75 (150)
                      ||+++.+.|.+|+..+.|-...     +... .-+|.+.++.     +   ..+...+..-.+...+.-+.+..+++..+
T Consensus         1 mi~siflidtsg~l~lek~~~g~t~~rsic~-~f~e~~~~~~-----~---~e~~ppvi~~p~hylfsv~~~~i~~~~~s   71 (418)
T KOG2740|consen    1 MILSIFLIDTSGDLLLEKHLKGSTVVRSICD-YFFEDQSSDD-----D---LEHVPPVISTPHHYLFSVYRDLIFFCAVS   71 (418)
T ss_pred             CeeEEEEEcCCchhhhhHhhCCceeeeehHH-HHHHhhhhcc-----c---cccCCceecCCceeeeeeeccCcEEEEEE
Confidence            9999999999999999888763     1111 1233322111     1   11122222223344555555665656555


Q ss_pred             C-CccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEccccc
Q 031907           76 D-EYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASF  134 (150)
Q Consensus        76 ~-~eNEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd~~I  134 (150)
                      . +--.|...|+||.+++++..+|++ .++..+.+|++.++..||||||+|.-.-|++.|
T Consensus        72 t~e~pPL~~iefL~rv~dv~~eyFg~-~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~Ni  130 (418)
T KOG2740|consen   72 TVETPPLMVIEFLHRVVDVLLEYFGG-LSESKIKDNVVVVYELLDEMIDNGFPLVTEPNI  130 (418)
T ss_pred             eccCCChhHHHHHHHHHHHHHHHhcc-cCHhHhhcceeeHHHHHHHHHHcCCCcccChhH
Confidence            4 445899999999999999998875 999999999999999999999999988888654

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=3.2e-06  Score=73.54  Aligned_cols=128  Identities=15%  Similarity=0.129  Sum_probs=105.1

Q ss_pred             eeEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccHH
Q 031907            2 ILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDEL   81 (150)
Q Consensus         2 I~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNEL   81 (150)
                      +.|+.++|..|+.+.+|=|... -.....++|...++.+.   ..+....++.+++...+|-+..++++.+.+..+-|=.
T Consensus         1 ~sa~fild~~G~~lisr~yr~d-v~~s~~~~F~~~l~~~e---~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~   76 (424)
T KOG0937|consen    1 ASAVFILDHKGEVLISRDYRGD-VPMSSTEKFFRKLFEKE---EGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAA   76 (424)
T ss_pred             CceEEEEcCCCcEeEeeccccc-CChhhhhhHHHHHhhhc---ccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHH
Confidence            4689999999999999999763 12345666776655432   1233345777899999999999998877776799999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEccccc
Q 031907           82 ALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASF  134 (150)
Q Consensus        82 ~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd~~I  134 (150)
                      .++++++.+++++..+|. .+.|..+..|+..++=.|||+.|=|+.+-|++.|
T Consensus        77 ~v~~~l~~~~~v~~~y~~-~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~i  128 (424)
T KOG0937|consen   77 LVLSFLYAVADVFGDYLS-ELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEI  128 (424)
T ss_pred             HHHHHHHHHHHHHHHHhc-cCCccceecchHHHHHHHHHHhccCCcccchHHH
Confidence            999999999999999997 5999999999999999999999999997777554

>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1

Probab=98.00  E-value=0.00025  Score=56.01  Aligned_cols=80  Identities=11%  Similarity=0.071  Sum_probs=69.1

Q ss_pred             CeEEEEEEeccEEEEEEecCCccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEccccccc
Q 031907           57 SVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTKASFDG  136 (150)
Q Consensus        57 ~~~iVyr~~~dL~~~vVg~~~eNEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd~~I~~  136 (150)
                      ...+||+...++.|.+|++++||-++.-.+|+.++..|...++.-..-..++.+.|.+..+|+...-.|..+=.|.+.++
T Consensus       103 ~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~~k  182 (189)
T PF15001_consen  103 PKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRFVK  182 (189)
T ss_pred             CcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHHHH
Confidence            56899999999999999999999999999999999999877754334467888999999999999999988877754443

>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.87  E-value=0.29  Score=35.90  Aligned_cols=92  Identities=13%  Similarity=0.084  Sum_probs=59.5

Q ss_pred             eeEEEEEeCCCCEEEEecCCCCHH--HHHHHHH----HHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEec
Q 031907            2 ILAVLFANSEGNILVERFNGVPAE--ERLHWRS----FLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGK   75 (150)
Q Consensus         2 I~avlIln~~G~r~lakyY~~~~~--~~~~~e~----~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~   75 (150)
                      +.+++|.|++|-++..=..+...+  -+..+-.    ...+..|  +.-.++ ...+..|+++.++--....+++.++++
T Consensus        17 l~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~tf~~a~~Q~~K--L~lG~n-k~ii~~Y~~~qvv~~~~~pl~it~ias   93 (119)
T PF08923_consen   17 LQAIVITDRDGVPIAKVSSDSAPESAMRPSLLSTFAMAIDQASK--LGLGKN-KSIIAYYDSYQVVQFNKLPLYITFIAS   93 (119)
T ss_dssp             EEEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCCHHHHHHHHTT--SSS-SE-EEEEEEESSEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEECCCCcEEEEecCCCCcchhhhhHHHHHHHHHhhcccc--cCCCCc-eEEEEEeCCEEEEEEeCCCeEEEEEec
Confidence            579999999999988866554211  1122111    1112221  122122 244667899999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHH
Q 031907           76 DEYDELALAEVIFAITSAVKD   96 (150)
Q Consensus        76 ~~eNEL~l~evl~~~ve~L~~   96 (150)
                      .+.|-=.++.+=+-+...+..
T Consensus        94 ~~aN~G~il~l~~~L~~~l~~  114 (119)
T PF08923_consen   94 SNANTGLILSLEEELAPILNE  114 (119)
T ss_dssp             TTS-HHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHhHHHHHHHHHH
Confidence            999998888887777777764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=94.84  E-value=0.64  Score=40.69  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             eEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccHHH
Q 031907            3 LAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELA   82 (150)
Q Consensus         3 ~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNEL~   82 (150)
                      |-++|+++.||+++++|=+  .+.-..+-+...++.. -... ...+..-+..+++++||-.=+-|+++.|....|.+-.
T Consensus        12 kh~fIlS~AGKPIysr~G~--e~~l~~~~g~~~aiiS-~~~~-~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~   87 (415)
T PF03164_consen   12 KHFFILSSAGKPIYSRYGD--EDKLSSLMGVIQAIIS-FFQS-NGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQ   87 (415)
T ss_pred             CeEEEECCCCceeEEecCC--hHHHHHHHHHHHHHHH-HHHh-CCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHH
Confidence            4589999999999999922  2222233333333321 0011 1123334557899999999999999888888888766


Q ss_pred             HHHHHHHHHH---------HHHHHhCCC--CCHHHHHhhhhhH
Q 031907           83 LAEVIFAITS---------AVKDACGKI--PTERLFLDKYGKI  114 (150)
Q Consensus        83 l~evl~~~ve---------~L~~~~~~~--v~e~~ll~n~d~v  114 (150)
                      |..-|+.+..         .+++++.++  -+-+.++..-|..
T Consensus        88 l~~qL~~ly~qils~lt~~~l~~~f~~r~n~DlR~lL~gtd~~  130 (415)
T PF03164_consen   88 LRKQLDYLYSQILSILTKPQLERIFEKRPNFDLRRLLGGTDRF  130 (415)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHhccCCCcchhhhccchHHH
Confidence            6555544443         344444432  3455555555544

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	2e-12
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	8e-07
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	2e-06

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153

 Score = 60.4 bits (146), Expect = 2e-12
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
            + A+L  +++G+ L  ++           +    K   +      +E  L+     VY 
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKE-QKAFEKNIFNKTHRTDSEIALLEGLTVVYK 70

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
                 D+  +V+G    +EL L  V+  +  ++     K   +R  L+    + L +DE
Sbjct: 71  SS---IDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query: 121 IV 122
           IV
Sbjct: 128 IV 129

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158

 Score = 45.1 bits (106), Expect = 8e-07
 Identities = 18/122 (14%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           M+  +L  + +G + ++++    +++    R  +V+     +   K +       + + +
Sbjct: 1   MMRFMLLFSRQGKLRLQKWYLATSDKE---RKKMVRELMQVVLARKPKMCSFLEWRDLKV 57

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VY     +      + + +EL   E+I      +    G +  E   +  + K    LDE
Sbjct: 58  VYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSV-CELDIIFNFEKAYFILDE 116

Query: 121 IV 122
            +
Sbjct: 117 FL 118

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 6/123 (4%)

Query: 1   MILAVLFANSEGNILVER-FNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVY 59
           MI  +L  N  G   + + +     +E+      +  +    +     +       ++  
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAV----VTVRDAKHTNFVEFRNFK 56

Query: 60  IVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLD 119
           I+Y     +   +      + LA  E I      + +    +  E   +  + K+   +D
Sbjct: 57  IIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNV-CELDLVFNFYKVYTVVD 115

Query: 120 EIV 122
           E+ 
Sbjct: 116 EMF 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	100.0
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	100.0
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	100.0
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	99.95
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	99.94
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	95.0
3cpt_A	143	Mitogen-activated protein kinase kinase 1- interac	93.48
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	88.8

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=100.00  E-value=4.3e-36  Score=227.52  Aligned_cols=130  Identities=18%  Similarity=0.274  Sum_probs=112.8

Q ss_pred             CeeEEEEEeCCCCEEEEecCCC---CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCC
Q 031907            1 MILAVLFANSEGNILVERFNGV---PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDE   77 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~---~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~   77 (150)
                      ||+|++|+|++|++|++|||.+   +.++|+++++.+.+..   .|.  ++  +++.++++++|||++++|+|+++++.+
T Consensus        12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~---~r~--~~--~i~~~~~~~~vy~~~~~Lyfv~~~~~~   84 (153)
T 3tjz_C           12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT---HRT--DS--EIALLEGLTVVYKSSIDLYFYVIGSSY   84 (153)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHH---SSC--CC--CEEEETTEEEEEEECSSCEEEEEEETT
T ss_pred             HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHH---hCC--CC--CEEEECCEEEEEEEECCEEEEEEEcCC
Confidence            8999999999999999999997   4456666665443333   232  23  477789999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccccC
Q 031907           78 YDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFDGH  137 (150)
Q Consensus        78 eNEL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~~~  137 (150)
                      +|||+++++||.++++|+.+|++++||+++++||++++.+||||+|+|+++||| ..|.++
T Consensus        85 eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~  145 (153)
T 3tjz_C           85 ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHR  145 (153)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHH
Confidence            999999999999999999999778999999999999999999999999999999 666544

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=100.00  E-value=2.3e-33  Score=209.11  Aligned_cols=130  Identities=14%  Similarity=0.131  Sum_probs=110.6

Q ss_pred             CeeEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCcc
Q 031907            1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD   79 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~-~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eN   79 (150)
                      ||+|++|+|++|++|++|||.+ +.+++++..+...+... + +.++  .++++.++++++|||++++|+|+++++.++|
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~-~-~~~~--~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N   76 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVT-V-RDAK--HTNFVEFRNFKIIYRRYAGLYFCICVDVNDN   76 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHH-T-CCTT--SCSEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHh-c-CCCC--CCCEEEECCEEEEEEEECCEEEEEEeCCCCC
Confidence            9999999999999999999997 55555544443333332 2 3223  3458899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccc
Q 031907           80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFD  135 (150)
Q Consensus        80 EL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~  135 (150)
                      ||+++++||.++++|+.+|+ ++||+++++|+++++.+||||+|+|+++||+ +.|.
T Consensus        77 ~l~~le~L~~~ve~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il  132 (142)
T 2vgl_S           77 NLAYLEAIHNFVEVLNEYFH-NVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVL  132 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHH
Confidence            99999999999999999885 5999999999999999999999999999997 7664

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=1e-32  Score=209.43  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=111.4

Q ss_pred             CeeEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCcc
Q 031907            1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD   79 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~-~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eN   79 (150)
                      ||+|++|+|++|++|++|||.+ +..+|+++++...++.. + +.++.  ++++.++++++|||++++|+|+++++.++|
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~-~-~~~~~--~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~N   76 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVL-A-RKPKM--CSFLEWRDLKVVYKRYASLYFCCAIEGQDN   76 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHH-T-SCSSS--CSEEEETTEEEEEEEETTEEEEEEECSSSC
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHh-c-cCCCC--CCeEEECCEEEEEEEECCEEEEEEecCCCC
Confidence            9999999999999999999998 55666666654444432 1 22223  458899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-ccc
Q 031907           80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASF  134 (150)
Q Consensus        80 EL~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I  134 (150)
                      ||+++++||.++++|+.+|+ ++||+++++|+++++.+||||+|+|+++||| ..|
T Consensus        77 el~~le~L~~~vevl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l  131 (158)
T 1w63_Q           77 ELITLELIHRYVELLDKYFG-SVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSV  131 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc-cCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHH
Confidence            99999999999999999886 5999999999999999999999999999999 444

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=99.95  E-value=4.8e-27  Score=201.91  Aligned_cols=129  Identities=16%  Similarity=0.160  Sum_probs=110.8

Q ss_pred             CeeEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccH
Q 031907            1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE   80 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNE   80 (150)
                      ||+|++|+|++|+++++|||.+... |...+.|.+.+..+  +..+  .+.++.++++++||+++++|+|+++++.++||
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~--~~~~--~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~   75 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIG-RNAVDAFRVNVIHA--RQQV--RSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA   75 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCC-HHHHHHHHHHTTTC--SSCC--CCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCC-hhHHHHHHHHHhcc--ccCC--CCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            9999999999999999999997222 44556666665532  2112  34588999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-cccc
Q 031907           81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFD  135 (150)
Q Consensus        81 L~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~  135 (150)
                      |+++|+||.++++|+.+|+ ++||+++++||++++.+||||+|+|+++||| ..|.
T Consensus        76 l~~le~L~~~v~vl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~  130 (435)
T 2vgl_M           76 AMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALK  130 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHh-ccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHH
Confidence            9999999999999999997 5999999999999999999999999999999 5444

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.94  E-value=1.2e-26  Score=198.93  Aligned_cols=131  Identities=15%  Similarity=0.109  Sum_probs=110.1

Q ss_pred             CeeEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCCccH
Q 031907            1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE   80 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~eNE   80 (150)
                      ||+|++|+|++|+++++|||.+..+ +...+.|.+.+..++ ...+.  +.++.++++++||+++++|+|+++++.++||
T Consensus         2 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~-~~~~~--~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~   77 (423)
T 1w63_M            2 SASAVYVLDLKGKVLICRNYRGDVD-MSEVEHFMPILMEKE-EEGML--SPILAHGGVRFMWIKHNNLYLVATSKKNACV   77 (423)
T ss_dssp             CCCEEEEEETTTEECSCBCCSCSCT-TTTHHHHHHHHHHHH-HTSCC--CSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred             ceEEEEEECCCCCEEEEEecCCCCC-hHHHHHHHHHHhhcc-ccCCC--CCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            8999999999999999999997221 123455665555332 11122  4588899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhHHHHHhhhhcCCEEEEcc-ccccc
Q 031907           81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKTLSYTTK-ASFDG  136 (150)
Q Consensus        81 L~l~evl~~~ve~L~~~~~~~v~e~~ll~n~d~v~l~lDEiI~~GiI~Etd-~~I~~  136 (150)
                      |+++|+||.++++|+.+| +++||+++++||++++.+||||+|+|+++||| ..|..
T Consensus        78 l~~le~L~~~v~~l~~yf-~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~  133 (423)
T 1w63_M           78 SLVFSFLYKVVQVFSEYF-KELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQE  133 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHH-hhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHH
Confidence            999999999999999988 56999999999999999999999999999999 55543

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=95.00  E-value=0.82  Score=34.49  Aligned_cols=97  Identities=10%  Similarity=0.090  Sum_probs=64.9

Q ss_pred             CeeEEEEEeCCCCEEEEecCCCC---HHHHHHHHHHHHHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEecCC
Q 031907            1 MILAVLFANSEGNILVERFNGVP---AEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDE   77 (150)
Q Consensus         1 MI~avlIln~~G~r~lakyY~~~---~~~~~~~e~~~~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~~~   77 (150)
                      ||+..+|.-.....+|+.+++.+   ..++..+....+.+.++. ..... .-..+.++++.+-|-.-.++.++++++.+
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki-~~~~~-~r~s~~~~~y~fhy~~~~gl~~l~i~d~~   79 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKL-NEQSP-TRCTLEAGAMTFHYIIEQGVCYLVLCEAA   79 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHC-CTTSC-SEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhc-CCCCC-CeEEEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence            88999998875567777787742   223445555555666443 21111 22345678999999998999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhC
Q 031907           78 YDELALAEVIFAITSAVKDACG   99 (150)
Q Consensus        78 eNEL~l~evl~~~ve~L~~~~~   99 (150)
                      +..-.....|+-+.+-...-++
T Consensus        80 yp~r~af~fL~~i~~~F~~~~~  101 (196)
T 2nut_C           80 FPKKLAFAYLEDLHSEFDEQHG  101 (196)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHhcc
Confidence            9888777777766665555444

>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A

Probab=93.48  E-value=1.6  Score=32.02  Aligned_cols=91  Identities=11%  Similarity=0.092  Sum_probs=58.2

Q ss_pred             eeEEEEEeCCCCEEEEecCCC-CHH-HHHHHHHHH----HHhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEec
Q 031907            2 ILAVLFANSEGNILVERFNGV-PAE-ERLHWRSFL----VKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGK   75 (150)
Q Consensus         2 I~avlIln~~G~r~lakyY~~-~~~-~~~~~e~~~----~~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~   75 (150)
                      +++++|.|++|-+++.-..+. |.. -|..+..-.    .+..|  +.-.++. .-+..|+++.+|--...-+++.++++
T Consensus        38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sK--LglGknk-sII~~Y~~yqvVq~n~~Plvit~Ias  114 (143)
T 3cpt_A           38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSK--LGLSKNK-SIICYYNTYQVVQFNRLPLVVSFIAS  114 (143)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHH--HTCCCEE-EEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhh--cCCCCCc-eEEEEecCeEEEEEecCCEEEEEEec
Confidence            589999999999999988876 321 122222211    12222  1111222 23456788888877899999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHH
Q 031907           76 DEYDELALAEVIFAITSAVK   95 (150)
Q Consensus        76 ~~eNEL~l~evl~~~ve~L~   95 (150)
                      .+.|-=+++.+=+-+...|.
T Consensus       115 ~~aNtG~Il~Le~~L~p~l~  134 (143)
T 3cpt_A          115 SSANTGLIVSLEKELAPLFE  134 (143)
T ss_dssp             TTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhHhhhHHHHHHHHH
Confidence            99998766665555555444

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=88.80  E-value=4.6  Score=28.97  Aligned_cols=94  Identities=11%  Similarity=0.019  Sum_probs=61.0

Q ss_pred             eeEEEEEeCCC--CEEEEecCCCC---HHHHHHHHHHH----HHhhhccCCCCCccceEEEeeCCeEEEEE-EeccEEEE
Q 031907            2 ILAVLFANSEG--NILVERFNGVP---AEERLHWRSFL----VKLGADNLKGVKNEELLVASHKSVYIVYT-VLGDVSIF   71 (150)
Q Consensus         2 I~avlIln~~G--~r~lakyY~~~---~~~~~~~e~~~----~~l~~~~~~~~~~~~~~i~~~~~~~iVyr-~~~dL~~~   71 (150)
                      |-+++|+-..+  ..+|+..++-+   .-+|...+++.    +++.+|. ..  +. -.-+.++++.+-|- +-.++.+.
T Consensus         7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~-~~--~~-R~sv~~~~y~fH~~~~~~gl~~l   82 (144)
T 3bw6_A            7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRT-GA--GQ-RQSIEEGNYIGHVYARSEGICGV   82 (144)
T ss_dssp             EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHC-CT--TE-EEEEEETTEEEEEEECTTSEEEE
T ss_pred             EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhC-CC--Cc-eEEEEeCCEEEEEEEecCCEEEE
Confidence            55666776543  67899999862   23444444332    3444433 22  22 23456788888777 77899999


Q ss_pred             EEecCCccHHHHHHHHHHHHHHHHHHhC
Q 031907           72 VVGKDEYDELALAEVIFAITSAVKDACG   99 (150)
Q Consensus        72 vVg~~~eNEL~l~evl~~~ve~L~~~~~   99 (150)
                      ++++.++-.-.....|+-+.+-....+.
T Consensus        83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~  110 (144)
T 3bw6_A           83 LITDKEYPVRPAYTLLNKILDEYLVAHP  110 (144)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEECCCCChhHHHHHHHHHHHHHHHHcc
Confidence            9999999988888887777776655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d2vgls_	142	d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem	3e-13
d2vglm2	141	d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass	2e-08

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	100.0
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	99.95
d3cpta1	116	MEK binding partner 1, MP1 {Human (Homo sapiens) [	94.11

>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: MEK binding partner 1, MP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.5  Score=31.89  Aligned_cols=92  Identities=11%  Similarity=0.121  Sum_probs=61.9

Q ss_pred             eeEEEEEeCCCCEEEEecCCC-CH-HHHHHHHHHHH----HhhhccCCCCCccceEEEeeCCeEEEEEEeccEEEEEEec
Q 031907            2 ILAVLFANSEGNILVERFNGV-PA-EERLHWRSFLV----KLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGK   75 (150)
Q Consensus         2 I~avlIln~~G~r~lakyY~~-~~-~~~~~~e~~~~----~l~~~~~~~~~~~~~~i~~~~~~~iVyr~~~dL~~~vVg~   75 (150)
                      +++++|.|++|-++++=+-+. |. .-+..+.....    +..|-.+.  ++ ...+..|+++.+|--...-+++.+||+
T Consensus        17 l~~I~iTDrDGVpv~~v~~~~~p~~~~~~~~lstf~~a~dq~sKLglg--~~-ksii~~Y~~~qvv~~~~~pl~vt~ia~   93 (116)
T d3cpta1          17 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLS--KN-KSIICYYNTYQVVQFNRLPLVVSFIAS   93 (116)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCC--CE-EEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEEcCCCcEEEEecCCCChhhhcchHHHHHHHHHHHhhcccCCC--CC-cEEEEEecCeEEEEEecCceEEEEEec
Confidence            689999999999998887765 32 11222222111    12211111  22 244667899999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHH
Q 031907           76 DEYDELALAEVIFAITSAVKD   96 (150)
Q Consensus        76 ~~eNEL~l~evl~~~ve~L~~   96 (150)
                      .+.|-=+++.+-+-+...|..
T Consensus        94 ~~aNtG~Il~l~~~l~~~L~~  114 (116)
T d3cpta1          94 SSANTGLIVSLEKELAPLFEE  114 (116)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhh
Confidence            999988887776666665543