Citrus Sinensis ID: 031926

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQV
Secondary Structure (PSIPRED)
cccccccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHccccccEEEEEEHHHHHHHHHccccHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHcccHHHHHHHHHHHcHHHccccccccccccccccHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHEEEEEEEccccEEEEEcccccccccccEEEEEEEc
Coil and Loop (DISEMBL)
mgkakkapkFAAMKKIITKRAIKNYkedvlnpnkkdltkekmprnvpnvssalffthntalgppyrvlvDTNFINFSIQNKLDLEKGMMdclyakctpciTDCVMAELEKLGQKYRVALRIakdprferlpcthkgtyaddcLVERVTQV
Flexible Loop (DISEMBL)
mgkakkapkfaamKKIITkraiknykedvlnpnkkdltkekmprnVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRiakdprferlpcthkgtyaddcLVERVTQV
Low Complexity Region (SEG)
MGkakkapkfaamkkIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQV
Disordered region (IsUnstruct)
**************KIITKRAIKNY***********************VSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVE*****
Disordered Region (DISOPRED)
****KKAPKFAAMKKII*********************************SALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQ*
Disordered Region (DISEMBL)
MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQV
Disordered Region (DISPRO)
*******PKFAAMKKIITKRAIKNYKEDVLN*********KMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q5RFQ0	198	rRNA-processing protein F	yes	no	0.993	0.752	0.682	1e-51
Q9Y324	198	rRNA-processing protein F	yes	no	0.993	0.752	0.682	1e-51
Q32PD0	198	rRNA-processing protein F	yes	no	0.993	0.752	0.682	1e-51
Q9CTH6	198	rRNA-processing protein F	yes	no	0.993	0.752	0.668	1e-50
Q05498	189	rRNA-processing protein F	yes	no	0.96	0.761	0.618	2e-48
O13610	192	rRNA-processing protein f	yes	no	0.993	0.776	0.590	3e-46
Q55GM5	194	rRNA-processing protein F	yes	no	0.946	0.731	0.503	2e-38
Q08DU1	248	rRNA-processing protein U	no	no	0.626	0.379	0.287	3e-06
Q9BRU9	249	rRNA-processing protein U	no	no	0.64	0.385	0.270	5e-06
O74862	260	rRNA-processing protein u	no	no	0.533	0.307	0.321	1e-05

>sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1

 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 118/151 (78%), Gaps = 2/151 (1%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
           MGK KK  K+A MK++++ R  +  ++D L P KK+         R VP   S LFF +N
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 59  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQ
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQ 151

Essential protein involved in pre-rRNA processing and 40S ribosomal subunit assembly.
Pongo abelii (taxid: 9601)

>sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1

 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 118/151 (78%), Gaps = 2/151 (1%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
           MGK KK  K+A MK++++ R  +  ++D L P KK+         R VP   S LFF +N
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 59  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQ
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQ 151

Essential protein involved in pre-rRNA processing and 40S ribosomal subunit assembly.

Homo sapiens (taxid: 9606)

>sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1

 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 118/151 (78%), Gaps = 2/151 (1%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
           MGK KK  K+A MK++++ R  +  ++D L P KK+         R VP   S LFF +N
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 59  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQ
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQ 151

Essential protein involved in pre-rRNA processing and 40S ribosomal subunit assembly.

Bos taurus (taxid: 9913)

>sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/151 (66%), Positives = 118/151 (78%), Gaps = 2/151 (1%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
           MGK KK  K+A MK++++ R  +  ++D L P KK+         R VP   S LFF +N
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 59  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQK+RVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVA 120

Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           LRIAKDPRF+RLPCTHKGTYADDCLV+RVTQ
Sbjct: 121 LRIAKDPRFDRLPCTHKGTYADDCLVQRVTQ 151

Essential protein involved in pre-rRNA processing and 40S ribosomal subunit assembly.

Mus musculus (taxid: 10090)

>sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1

 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 117/152 (76%), Gaps = 8/152 (5%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDL-TKE--KMPRNVPNVSSALFFTH 57
           MGKAKK  KF      + KR +   K+  L  N++++ TKE  ++ RN+P VSSALFF +
Sbjct: 1   MGKAKKTRKFG-----LVKRTLNTKKDQRLKKNQENIKTKEDPELTRNIPQVSSALFFQY 55

Query: 58  NTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRV 117
           N A+ PPY+VL+DTNFINFSIQ K+D+ +GMMDCL AKC P ITDCVMAELEKLG KYR+
Sbjct: 56  NQAIKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRI 115

Query: 118 ALRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           AL++A+DPR +RL C+HKGTYADDCLV RV Q
Sbjct: 116 ALKLARDPRIKRLSCSHKGTYADDCLVHRVLQ 147

Essential protein involved in pre-rRNA processing and 40S ribosomal subunit assembly. Required for the early cleavage steps of 35S rRNA at the A(0), A(1), and A(2) sites.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcf1 PE=3 SV=1

 Score =  183 bits (465), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 112/149 (75%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
           MGKAK   KFA +K++I  +  +  K+D     +K     ++ R +P ++S LFF  N +
Sbjct: 1   MGKAKTTRKFAQVKRVINLKDQRLQKKDQKKEKEKTTKNGELVREIPQMASNLFFQFNES 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPY V++DTNFINF +Q K+DL +G+M CLYAK  PCI+DCVMAELEKLG +YR+ALR
Sbjct: 61  LGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGIRYRIALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           IAKD RFERLPCTHKGTYADDC+V+RV Q
Sbjct: 121 IAKDERFERLPCTHKGTYADDCIVQRVMQ 149

Essential protein involved in pre-rRNA processing and 40S ribosomal subunit assembly. Required for the early cleavage steps of 35S rRNA at the A(0), A(1), and A(2) sites.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q55GM5|FCF1_DICDI rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum GN=fcf1 PE=3 SV=1

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 105/143 (73%), Gaps = 1/143 (0%)

Query: 7   APKFAAMKKI-ITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPY 65
           APK   ++K+  T     N ++ +    ++D  ++K+     + +S +FF++N AL PPY
Sbjct: 8   APKKVPLQKLNKTNPNFSNRQKQIQRSKQEDEHRKKLEEIPEDNTSHMFFSYNEALVPPY 67

Query: 66  RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDP 125
            V++DTNFINFSI +KLD+   +MDCLYAKC P I+DCV AE+E+LG K++VAL+I+KDP
Sbjct: 68  HVIIDTNFINFSISHKLDIIHSLMDCLYAKCIPYISDCVAAEIERLGSKFKVALKISKDP 127

Query: 126 RFERLPCTHKGTYADDCLVERVT 148
           RF+RL C+HKGTYADDC++ R+T
Sbjct: 128 RFQRLTCSHKGTYADDCIINRIT 150

Essential protein involved in pre-rRNA processing and 40S ribosomal subunit assembly.

Dictyostelium discoideum (taxid: 44689)

>sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%)

Query: 54  FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
           FF +N  +  PY++L+D  F   +++ ++ L + +   L A+   C T CV+ ELE LG+
Sbjct: 15  FFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMAETQLCTTRCVLKELETLGK 74

Query: 114 KYRVALRIAKDPRFERLPCTHKGTYADDCLVERV 147
               A  IA+  +    P         +CL+  V
Sbjct: 75  DLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMV 108

Involved in rRNA-processing and ribosome biogenesis.

Bos taurus (taxid: 9913)

>sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query: 54  FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
           FF +N  +  PY++L+D  F   +++ ++ L + +   L  +   C T CV+ ELE LG+
Sbjct: 15  FFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGETQLCTTRCVLKELETLGK 74

Query: 114 KYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
               A  IA+  +    P         +CL+  V +
Sbjct: 75  DLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEE 110

Involved in rRNA-processing and ribosome biogenesis.

Homo sapiens (taxid: 9606)

>sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp23 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 53  LFFTHNTALG--PPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEK 110
           L  T+    G   PY+VLVD +F+    Q K+D++  +   +     P IT C + +L  
Sbjct: 12  LMHTYQLLFGFREPYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCIRQLYS 71

Query: 111 LGQKYRVALRIAKDPRFERLPCTH 134
              + +  +RIAK   FER  C H
Sbjct: 72  KSDELKQEIRIAKS--FERRRCGH 93

Involved in rRNA-processing and ribosome biogenesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
449437727	198	PREDICTED: rRNA-processing protein FCF1	0.993	0.752	0.892	1e-74
356543662	198	PREDICTED: rRNA-processing protein FCF1	0.993	0.752	0.885	1e-72
255638538	198	unknown [Glycine max]	0.993	0.752	0.885	1e-72
413953110	277	hypothetical protein ZEAMMB73_573811 [Ze	1.0	0.541	0.867	7e-72
294461424	198	unknown [Picea sitchensis]	0.993	0.752	0.872	8e-72
388522413	198	unknown [Lotus japonicus]	0.993	0.752	0.865	2e-71
356504145	216	PREDICTED: LOW QUALITY PROTEIN: rRNA-pro	0.993	0.689	0.865	3e-71
224130438	198	predicted protein [Populus trichocarpa]	0.993	0.752	0.852	4e-71
224067950	198	predicted protein [Populus trichocarpa]	0.993	0.752	0.852	9e-71
115466536	199	Os06g0158600 [Oryza sativa Japonica Grou	0.993	0.748	0.866	2e-70

>gi|449437727|ref|XP_004136642.1| PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis sativus] gi|449511643|ref|XP_004164015.1| PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis sativus]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/149 (89%), Positives = 142/149 (95%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
           MG+AKK PKFA MKK++T +AIKNYKE+VLNP +KDLTKE +PRNVPNV SALFF +NTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           IAKDPRFERLPCTHKGTYADDCLVERVTQ
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQ 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543662|ref|XP_003540279.1| PREDICTED: rRNA-processing protein FCF1 homolog [Glycine max] gi|356550034|ref|XP_003543395.1| PREDICTED: rRNA-processing protein FCF1 homolog [Glycine max]

 Score =  277 bits (708), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/149 (88%), Positives = 140/149 (93%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
           MGKAKK PKFA MKKI+T +AIK+YKE+VLNP KK+L KEK+PRNVP  SSALFF +NTA
Sbjct: 1   MGKAKKGPKFAVMKKIVTSKAIKSYKEEVLNPEKKNLMKEKLPRNVPTHSSALFFQYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           IAKDPRFER+ CTHKGTYADDCLVERVTQ
Sbjct: 121 IAKDPRFERILCTHKGTYADDCLVERVTQ 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638538|gb|ACU19577.1| unknown [Glycine max]

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/149 (88%), Positives = 140/149 (93%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
           MGKAKK PKFA MKKI+T +AIK+YKE+VLNP KK+L KEK+PRNVP  SSALFF +NTA
Sbjct: 1   MGKAKKGPKFAVMKKIVTSKAIKSYKEEVLNPEKKNLMKEKLPRNVPTHSSALFFQYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           IAKDPRFER+ CTHKGTYADDCLVERVTQ
Sbjct: 121 IAKDPRFERILCTHKGTYADDCLVERVTQ 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413953110|gb|AFW85759.1| hypothetical protein ZEAMMB73_573811 [Zea mays]

 Score =  274 bits (701), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 131/151 (86%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 1   MGKAK-KAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNT 59
           MGKAK K PKFAA+KKIITK+ I  YKEDVLN  KKD  KEK+ RNVP VSSALFF++NT
Sbjct: 122 MGKAKSKGPKFAAVKKIITKKTINKYKEDVLNHKKKDADKEKLGRNVPQVSSALFFSYNT 181

Query: 60  ALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 119
           ALGPPYRV+VDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL
Sbjct: 182 ALGPPYRVIVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 241

Query: 120 RIAKDPRFERLPCTHKGTYADDCLVERVTQV 150
           RIAKDPRF+RL CTHKGTYADDC+VERVTQV
Sbjct: 242 RIAKDPRFQRLACTHKGTYADDCIVERVTQV 272

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461424|gb|ADE76273.1| unknown [Picea sitchensis]

 Score =  274 bits (701), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 130/149 (87%), Positives = 139/149 (93%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
           MGK+KK PKFA MK II+ +AIK YKE+VLNPNKK+  K+K+PRNVPNVSSALFF +NTA
Sbjct: 1   MGKSKKTPKFAKMKSIISSKAIKKYKEEVLNPNKKNAEKQKLPRNVPNVSSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPY VLVDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYLVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           IAKDPRFERLPCTH+GTYADDCLVERVTQ
Sbjct: 121 IAKDPRFERLPCTHEGTYADDCLVERVTQ 149

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522413|gb|AFK49268.1| unknown [Lotus japonicus]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/149 (86%), Positives = 139/149 (93%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
           MGKAKK PKFA  KK++T +AIKNYKE+VLNP KK+L KEK+PRN+P+ SSALFF +NTA
Sbjct: 1   MGKAKKGPKFAVRKKLVTSKAIKNYKEEVLNPEKKNLLKEKLPRNIPSYSSALFFQYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMM CLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMGCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           IAKDPRFER+ CTHKGTYADDCLVERVTQ
Sbjct: 121 IAKDPRFERILCTHKGTYADDCLVERVTQ 149

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504145|ref|XP_003520859.1| PREDICTED: LOW QUALITY PROTEIN: rRNA-processing protein FCF1 homolog [Glycine max]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 129/149 (86%), Positives = 138/149 (92%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
           MGKAKK PKFA MKK +T +AIKNYKE VLNP KK+L KEK+PRN+P+ SSALFF +NTA
Sbjct: 1   MGKAKKGPKFAVMKKAVTSKAIKNYKEKVLNPEKKNLLKEKLPRNIPSHSSALFFQYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYR+LVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRILVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           IAKDPRFER+ CTHKG YADDCLVERVTQ
Sbjct: 121 IAKDPRFERILCTHKGMYADDCLVERVTQ 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130438|ref|XP_002320837.1| predicted protein [Populus trichocarpa] gi|222861610|gb|EEE99152.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/149 (85%), Positives = 140/149 (93%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
           MG+AKK PKFA MKK+IT +AIK +KE+VLNP KKDL+ EK+PRNVP VSSAL+F++NTA
Sbjct: 1   MGRAKKGPKFAKMKKMITSKAIKQHKEEVLNPKKKDLSLEKLPRNVPQVSSALYFSYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEK M+DCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKAMLDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           IAKDPRFERLPC HKGTYADDC+VERVT+
Sbjct: 121 IAKDPRFERLPCIHKGTYADDCIVERVTK 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067950|ref|XP_002302614.1| predicted protein [Populus trichocarpa] gi|222844340|gb|EEE81887.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 127/149 (85%), Positives = 138/149 (92%)

Query: 1   MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
           MG+AKK PKFA MK +IT RAIK +KE+VLNP K+DL  EK+PRNVP VSSALFF++NTA
Sbjct: 1   MGRAKKGPKFAKMKTMITSRAIKQHKEEVLNPKKRDLYLEKLPRNVPQVSSALFFSYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEK M+DCLYAKCTPCITDCVMAELEKLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKAMLDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           IAKDPRFERLPC HKGTYADDC+VERVT+
Sbjct: 121 IAKDPRFERLPCVHKGTYADDCIVERVTK 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115466536|ref|NP_001056867.1| Os06g0158600 [Oryza sativa Japonica Group] gi|55296600|dbj|BAD69198.1| unknown protein [Oryza sativa Japonica Group] gi|113594907|dbj|BAF18781.1| Os06g0158600 [Oryza sativa Japonica Group] gi|215715283|dbj|BAG95034.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765556|dbj|BAG87253.1| unnamed protein product [Oryza sativa Japonica Group] gi|218197628|gb|EEC80055.1| hypothetical protein OsI_21758 [Oryza sativa Indica Group] gi|222634998|gb|EEE65130.1| hypothetical protein OsJ_20200 [Oryza sativa Japonica Group]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/150 (86%), Positives = 140/150 (93%), Gaps = 1/150 (0%)

Query: 1   MGKAK-KAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNT 59
           MG+AK K PKFAA+KKIITK+ I+ YKEDVLNP KKD  KEK+ RNVP VSSALFF++NT
Sbjct: 1   MGRAKSKGPKFAAVKKIITKKTIQKYKEDVLNPKKKDNEKEKLGRNVPQVSSALFFSYNT 60

Query: 60  ALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 119
           ALGPPYRV+VDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL
Sbjct: 61  ALGPPYRVIVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 120

Query: 120 RIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           RIAKDPRF+RL CTHKGTYADDC+VERVTQ
Sbjct: 121 RIAKDPRFQRLACTHKGTYADDCIVERVTQ 150

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2062902	196	AT2G46230 "AT2G46230" [Arabido	0.88	0.673	0.805	4.6e-57
UNIPROTKB|Q32PD0	198	FCF1 "rRNA-processing protein	0.826	0.626	0.738	1.4e-46
UNIPROTKB|Q9Y324	198	FCF1 "rRNA-processing protein	0.826	0.626	0.738	1.4e-46
MGI|MGI:1920986	198	Fcf1 "FCF1 small subunit (SSU)	0.826	0.626	0.722	7.9e-46
SGD|S000002747	189	FCF1 "Putative PINc domain nuc	0.886	0.703	0.632	5e-44
ZFIN|ZDB-GENE-050417-67	198	fcf1 "FCF1 small subunit (SSU)	0.766	0.580	0.732	5.7e-43
POMBASE|SPBC32H8.04c	192	SPBC32H8.04c "rRNA processing	0.853	0.666	0.625	4.6e-41
FB|FBgn0010520	200	Bka "Bekka" [Drosophila melano	0.666	0.5	0.78	1.6e-40
CGD|CAL0003244	201	orf19.3220 [Candida albicans (	0.726	0.542	0.688	1.4e-39
UNIPROTKB|Q59MK3	201	CaO19.10731 "Potential essenti	0.726	0.542	0.688	1.4e-39

TAIR|locus:2062902 AT2G46230 "AT2G46230" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 108/134 (80%), Positives = 123/134 (91%)

Query:    16 IITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFIN 75
             +I+ +A+K+YKE+VLNPNKKDLT+  +PRNVP+V + LFF++N+ L PPYRVLVDTNFIN
Sbjct:    16 MISHKALKHYKEEVLNPNKKDLTE--LPRNVPSVPAGLFFSYNSTLVPPYRVLVDTNFIN 73

Query:    76 FSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHK 135
             FSIQNK+DLEKGM DCLYA CTPCITDCVMAELEKLGQKYRVALRIAKDP FERLPC HK
Sbjct:    74 FSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALRIAKDPHFERLPCIHK 133

Query:   136 GTYADDCLVERVTQ 149
             GTYADDCLV+RVTQ
Sbjct:   134 GTYADDCLVDRVTQ 147

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0051604 "protein maturation" evidence=RCA

UNIPROTKB|Q32PD0 FCF1 "rRNA-processing protein FCF1 homolog" [Bos taurus (taxid:9913)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 93/126 (73%), Positives = 102/126 (80%)

Query:    26 KEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLD 83
             ++D L P KK+         R VP   S LFF +NT LGPPY +LVDTNFINFSI+ KLD
Sbjct:    26 EKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLD 85

Query:    84 LEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCL 143
             L + MMDCLYAKC PCITDCVMAE+EKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCL
Sbjct:    86 LVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCL 145

Query:   144 VERVTQ 149
             V+RVTQ
Sbjct:   146 VQRVTQ 151

GO:0005730 "nucleolus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|Q9Y324 FCF1 "rRNA-processing protein FCF1 homolog" [Homo sapiens (taxid:9606)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 93/126 (73%), Positives = 102/126 (80%)

Query:    26 KEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLD 83
             ++D L P KK+         R VP   S LFF +NT LGPPY +LVDTNFINFSI+ KLD
Sbjct:    26 EKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLD 85

Query:    84 LEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCL 143
             L + MMDCLYAKC PCITDCVMAE+EKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCL
Sbjct:    86 LVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCL 145

Query:   144 VERVTQ 149
             V+RVTQ
Sbjct:   146 VQRVTQ 151

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1920986 Fcf1 "FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 91/126 (72%), Positives = 102/126 (80%)

Query:    26 KEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLD 83
             ++D L P KK+         R VP   S LFF +NT LGPPY +LVDTNFINFSI+ KLD
Sbjct:    26 EKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLD 85

Query:    84 LEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCL 143
             L + MMDCLYAKC PCITDCVMAE+EKLGQK+RVALRIAKDPRF+RLPCTHKGTYADDCL
Sbjct:    86 LVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVALRIAKDPRFDRLPCTHKGTYADDCL 145

Query:   144 VERVTQ 149
             V+RVTQ
Sbjct:   146 VQRVTQ 151

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

SGD|S000002747 FCF1 "Putative PINc domain nuclease" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 86/136 (63%), Positives = 109/136 (80%)

Query:    17 ITKRAIKNYKEDVLNPNKKDL-TKE--KMPRNVPNVSSALFFTHNTALGPPYRVLVDTNF 73
             + KR +   K+  L  N++++ TKE  ++ RN+P VSSALFF +N A+ PPY+VL+DTNF
Sbjct:    12 LVKRTLNTKKDQRLKKNQENIKTKEDPELTRNIPQVSSALFFQYNQAIKPPYQVLIDTNF 71

Query:    74 INFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCT 133
             INFSIQ K+D+ +GMMDCL AKC P ITDCVMAELEKLG KYR+AL++A+DPR +RL C+
Sbjct:    72 INFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRIALKLARDPRIKRLSCS 131

Query:   134 HKGTYADDCLVERVTQ 149
             HKGTYADDCLV RV Q
Sbjct:   132 HKGTYADDCLVHRVLQ 147

GO:0032040 "small-subunit processome" evidence=IDA;IPI

GO:0006364 "rRNA processing" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050417-67 fcf1 "FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 85/116 (73%), Positives = 97/116 (83%)

Query:    34 KKDLTKEKMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLY 93
             K+D +  K  + +    S LFF +NT LGPPY +LVDTNFINFSI+ KLD+ + MMDCLY
Sbjct:    37 KEDPSAIK-EQEIAKYPSCLFFQYNTQLGPPYYILVDTNFINFSIKAKLDVVQSMMDCLY 95

Query:    94 AKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
             AKC PCITDCVMAELEKLG KYRVALRIAKDPRF+RLPC+HKGTYADDCLV+RVTQ
Sbjct:    96 AKCVPCITDCVMAELEKLGMKYRVALRIAKDPRFDRLPCSHKGTYADDCLVQRVTQ 151

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPBC32H8.04c SPBC32H8.04c "rRNA processing protein Fcf1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 87/139 (62%), Positives = 104/139 (74%)

Query:    19 KRAIKNYKEDVLNPNKKDLTKEK--------MPRNVPNVSSALFFTHNTALGPPYRVLVD 70
             KR I N K+  L   KKD  KEK        + R +P ++S LFF  N +LGPPY V++D
Sbjct:    14 KRVI-NLKDQRLQ--KKDQKKEKEKTTKNGELVREIPQMASNLFFQFNESLGPPYHVIID 70

Query:    71 TNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERL 130
             TNFINF +Q K+DL +G+M CLYAK  PCI+DCVMAELEKLG +YR+ALRIAKD RFERL
Sbjct:    71 TNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGIRYRIALRIAKDERFERL 130

Query:   131 PCTHKGTYADDCLVERVTQ 149
             PCTHKGTYADDC+V+RV Q
Sbjct:   131 PCTHKGTYADDCIVQRVMQ 149

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0032040 "small-subunit processome" evidence=ISO

FB|FBgn0010520 Bka "Bekka" [Drosophila melanogaster (taxid:7227)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 78/100 (78%), Positives = 88/100 (88%)

Query:    50 SSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELE 109
             SSALFF +NT LGPPY +++DTNFINFSI+NKLD+ +GMMDCLYAKC P I+DCV AELE
Sbjct:    55 SSALFFQYNTQLGPPYHIVLDTNFINFSIKNKLDIVQGMMDCLYAKCIPYISDCVRAELE 114

Query:   110 KLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
             KLG KY++ALRI  DPRFERLPC HKGTYADDCLVERV Q
Sbjct:   115 KLGNKYKLALRIISDPRFERLPCLHKGTYADDCLVERVRQ 154

GO:0005634 "nucleus" evidence=NAS

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=NAS

GO:0048812 "neuron projection morphogenesis" evidence=IMP

CGD|CAL0003244 orf19.3220 [Candida albicans (taxid:5476)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 75/109 (68%), Positives = 93/109 (85%)

Query:    41 KMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCI 100
             ++ R+VP VSSALFF +N ++ PPY+VL+DTNFINFSIQ K+D+ +G+MDCL AKC P I
Sbjct:    51 ELTRSVPQVSSALFFKYNESIKPPYQVLIDTNFINFSIQKKIDIIRGLMDCLMAKCIPII 110

Query:   101 TDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
             TDCV+AELEKLG KYR+AL++AKDPR +RL C+H GTYADDCLV RV Q
Sbjct:   111 TDCVIAELEKLGSKYRIALKLAKDPRIQRLKCSHVGTYADDCLVNRVIQ 159

GO:0003674 "molecular_function" evidence=ND

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q59MK3 CaO19.10731 "Potential essential protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 75/109 (68%), Positives = 93/109 (85%)

Query:    41 KMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCI 100
             ++ R+VP VSSALFF +N ++ PPY+VL+DTNFINFSIQ K+D+ +G+MDCL AKC P I
Sbjct:    51 ELTRSVPQVSSALFFKYNESIKPPYQVLIDTNFINFSIQKKIDIIRGLMDCLMAKCIPII 110

Query:   101 TDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
             TDCV+AELEKLG KYR+AL++AKDPR +RL C+H GTYADDCLV RV Q
Sbjct:   111 TDCVIAELEKLGSKYRIALKLAKDPRIQRLKCSHVGTYADDCLVNRVIQ 159

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55GM5	FCF1_DICDI	No assigned EC number	0.5034	0.9466	0.7319	yes	no
Q9Y324	FCF1_HUMAN	No assigned EC number	0.6821	0.9933	0.7525	yes	no
Q9CTH6	FCF1_MOUSE	No assigned EC number	0.6688	0.9933	0.7525	yes	no
Q32PD0	FCF1_BOVIN	No assigned EC number	0.6821	0.9933	0.7525	yes	no
Q05498	FCF1_YEAST	No assigned EC number	0.6184	0.96	0.7619	yes	no
O13610	FCF1_SCHPO	No assigned EC number	0.5906	0.9933	0.7760	yes	no
Q5RFQ0	FCF1_PONAB	No assigned EC number	0.6821	0.9933	0.7525	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00140377	hypothetical protein (198 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•			•		0.612
	estExt_Genewise1_v1.C_LG_XIX2192	SubName- Full=Putative uncharacterized protein; (128 aa)			•	•			•		0.612
	estExt_fgenesh4_pg.C_410046	SubName- Full=Putative uncharacterized protein; (128 aa)			•	•			•		0.610
	estExt_Genewise1_v1.C_17140001	phosphomannomutase (EC-5.4.2.8) (229 aa)			•						0.467
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•	•				0.458
	grail3.0004003701	hypothetical protein (230 aa)			•	•			•		0.451
	estExt_fgenesh4_pm.C_LG_VI0124	hypothetical protein (284 aa)			•	•			•		0.443
	grail3.0155003501	SubName- Full=Putative uncharacterized protein; (182 aa)				•			•		0.439
	eugene3.01650013	SubName- Full=Putative uncharacterized protein; (182 aa)				•			•		0.434
	fgenesh4_pm.C_LG_I000959	hypothetical protein (252 aa)			•						0.433

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
cd09864	143	cd09864, PIN_Fcf1, PIN domain of rRNA-processing p	3e-73
COG1412	136	COG1412, COG1412, Uncharacterized proteins of PilT	5e-33
cd08553	120	cd08553, PIN_Fcf1-like, PIN domain of rRNA-process	3e-32
pfam04900	101	pfam04900, Fcf1, Fcf1	7e-28
cd09854	125	cd09854, PIN_VapC-Smg6_family, PIN domains of VapC	3e-20
cd09866	147	cd09866, PIN_Fcf1-Utp23-H, PIN domain of rRNA-proc	7e-17
cd09852	120	cd09852, PIN_SF, PIN (PilT N terminus) domain: Sup	1e-11
cd09865	148	cd09865, PIN_Utp23, PIN domain of rRNA-processing	2e-09
cd09879	117	cd09879, PIN_AF0591, PIN domain of Archaeoglobus f	1e-06
smart00670	111	smart00670, PINc, Large family of predicted nucleo	3e-05

>gnl|CDD|189034 cd09864, PIN_Fcf1, PIN domain of rRNA-processing protein, Fcf1 (Utp24, YDR339C), and other eukaryotic homologs

 Score =  215 bits (549), Expect = 3e-73
 Identities = 88/97 (90%), Positives = 92/97 (94%)

Query: 53  LFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG 112
           LFF +NTALGPPY VLVDTNFINFSI+NKLDL +GMMDCLYAKC PCITDCVMAELEKLG
Sbjct: 9   LFFQYNTALGPPYHVLVDTNFINFSIKNKLDLVEGMMDCLYAKCIPCITDCVMAELEKLG 68

Query: 113 QKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQ 149
           QKYRVAL+IAKDPRFERLPC HKGTYADDCLVERVTQ
Sbjct: 69  QKYRVALKIAKDPRFERLPCDHKGTYADDCLVERVTQ 105

Fcf1/Utp24 (FAF1-copurifying factor 1/U three-associated protein 24) is an essential protein involved in pre-rRNA processing and 40S ribosomal subunit assembly. Component of the small subunit (SSU) processome, Fcf1 is an essential nucleolar protein that is required for processing of the 18S pre-rRNA at sites A0-A2. The Fcf1 protein was reported to interact with Pmc1p (vacuolar Ca2+ ATPase) and Cor1p (core subunit of the ubiquinol-cytochrome c reductase complex). The PIN (PilT N terminus) domain of this protein is a homolog of flap endonuclease-1 (FEN1)-like PIN domains, but apparently lack the H3TH domain or extensive arch/clamp region seen in the latter. PIN domains typically contain three or four conserved acidic residues (putative metal-binding, active site residues). The Fcf1 PIN domain subfamily has four of these putative active site residues and the Fcf1-Utp23 homolog PIN domain subfamily has three of them. Point mutation studies of the conserved acidic residues in the putative active site of Saccharomyces cerevisiae Fcf1 determined they were essential for pre-rRNA processing at sites A1 and A2, whereas the presence of the Fcf1 protein itself is also required for cleavage at site A0. Length = 143

>gnl|CDD|224330 COG1412, COG1412, Uncharacterized proteins of PilT N-term

 Score =  113 bits (284), Expect = 5e-33
 Identities = 44/94 (46%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 55  FTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK 114
           F  N     PY+VLVDTNF+ +  Q K+D+ + +   L AK  P I  CV+ ELEKL +K
Sbjct: 1   FQDNFGFRKPYQVLVDTNFLLYPYQFKVDIFEELERLLGAKYKPAIPSCVIRELEKLKRK 60

Query: 115 YRVALRIA-KDPRFERLPCTHKGTYADDCLVERV 147
           +R   RIA      ERL C HKG YAD+CL+E  
Sbjct: 61  HRGKARIAIALKYAERLECIHKGRYADECLLEAA 94

/Vapc superfamily [General function prediction only]. Length = 136

>gnl|CDD|189021 cd08553, PIN_Fcf1-like, PIN domain of rRNA-processing proteins, Fcf1 (Utp24, YDR339C), Utp23 (YOR004W), and other eukaryotic homologs

 Score =  110 bits (277), Expect = 3e-32
 Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 3/84 (3%)

Query: 67  VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPR 126
           VLVD NFI   + +K+DL++ +  CLY KC PCIT CV+AELE LG+K + A +IAK   
Sbjct: 1   VLVDGNFIKACLDHKIDLKEQLPKCLYGKCWPCITPCVLAELESLGKKLKDAFKIAKTL- 59

Query: 127 FERLPCTHKGT-YADDCLVERVTQ 149
            ERL C HK    AD+CL++ V +
Sbjct: 60  -ERLNCNHKEGASADECLLDIVKK 82

Fcf1 (FAF1-copurifying factor 1, also known as Utp24) and Utp23 (U three-associated protein 23) are essential proteins involved in pre-rRNA processing and 40S ribosomal subunit assembly. Components of the small subunit (SSU) processome, Fcf1 and Utp23 are essential nucleolar proteins that are required for processing of the 18S pre-rRNA at sites A0-A2. The Fcf1 protein was reported to interact with Pmc1p (vacuolar Ca2+ ATPase) and Cor1p (core subunit of the ubiquinol-cytochrome c reductase complex). The PIN (PilT N terminus) domains of these proteins are homologs of flap endonuclease-1 (FEN1)-like PIN domains, but apparently lack the H3TH domain or extensive arch/clamp region seen in the latter. PIN domains typically contain three or four conserved acidic residues (putative metal-binding, active site residues). The Fcf1 PIN domain subfamily has four of these putative active site residues. Point mutation studies showed that the conserved acidic residues in the putative active site of Saccharomyces cerevisiae Fcf1 are essential for pre-rRNA processing at sites A1 and A2, whereas the presence of the Fcf1 protein itself is also required for cleavage at site A0. S. cerevisiae Utp23 lacks several of these key residues and mutation of the conserved acidic residues seen in Utp23 did not interfere with rRNA maturation and cell viability. The subfamily of Fcf1- and Utp23-like homologs found in eukaryotes (except fungi) posses three of the four conserved residues seen in S. cerevisiae Fcf1. Length = 120

>gnl|CDD|218319 pfam04900, Fcf1, Fcf1

 Score = 98.8 bits (247), Expect = 7e-28
 Identities = 43/63 (68%), Positives = 50/63 (79%), Gaps = 2/63 (3%)

Query: 89  MDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGT--YADDCLVER 146
           M CL AK  P ITDCV+AELEKLG K+R AL+IAKD RFERL C HKGT  YADDC+++R
Sbjct: 1   MKCLQAKVKPYITDCVIAELEKLGPKFRGALKIAKDKRFERLKCNHKGTEVYADDCILDR 60

Query: 147 VTQ 149
           V +
Sbjct: 61  VGK 63

Fcf1 is a nucleolar protein involved in pre-rRNA processing. Depletion of yeast Fcf1 and Fcf2 leads to a decrease in synthesis of the 18S rRNA and results in a deficit in 40S ribosomal subunits. Length = 101

>gnl|CDD|189024 cd09854, PIN_VapC-Smg6_family, PIN domains of VapC and Smg6 ribonucleases, ribosome assembly factor NOB1, rRNA-processing protein Fcf1, Archaeoglobus fulgidus AF0591 protein, and homologs

 Score = 80.5 bits (198), Expect = 3e-20
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 16/98 (16%)

Query: 68  LVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRF 127
           ++DTN I F+I +KLD+   ++DCL A C   I+D V AE+   G K++VALRI KD R 
Sbjct: 1   ILDTNVILFAISHKLDIIHDLLDCLNAFCDVYISDIVAAEIRNKGSKFKVALRIRKDCRD 60

Query: 128 -ERLPCTHKGT---------------YADDCLVERVTQ 149
            +R  C HK                  ADDC + +   
Sbjct: 61  HKRFICFHKEFSEHTFVERLPNETINDADDCAINKTCM 98

PIN (PilT N terminus) domains of such ribonucleases as the toxins of prokaryotic toxin/antitoxin operons FitAB and VapBC, as well as, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and, rRNA-processing protein Fcf1, are included in this family. Also included are the PIN domains of the Pyrobaculum aerophilum Pea0151 and Archaeoglobus fulgidus AF0591 proteins and other similar archaeal homologs. These PIN domains are structural homologs of flap endonuclease-1 (FEN1)-like PIN domains, but lack the extensive arch/clamp region and the H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region, seen in FEN1-like PIN domains. PIN domains typically contain three or four highly conserved acidic residues (putative metal-binding, active site residues) which cluster at the C-terminal end of the beta-sheet and form a negatively charged pocket near the center of the molecule. Length = 125

>gnl|CDD|189036 cd09866, PIN_Fcf1-Utp23-H, PIN domain of rRNA-processing protein Fcf1- and Utp23-like homologs found in eukaryotes except fungi

 Score = 71.8 bits (177), Expect = 7e-17
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 54  FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
           F+ +N     PY+VLVD  F + +++NK+++++ +   L  +     T CV+AELEKLG 
Sbjct: 14  FYRNNFGFREPYQVLVDGTFCHAALKNKVNIKEQLPKYLGGEVKLFTTRCVIAELEKLGP 73

Query: 114 KYRVALRIAKDPRFERLPCTHKG--TYADDCLVE 145
               AL IAK  RF+   C H+     A +CL  
Sbjct: 74  DLYGALLIAK--RFQVAKCGHEKSPVSASECLKS 105

PIN domain homologs of Fcf1/Utp24 (FAF1-copurifying factor 1/U three-associated protein 24) and Utp23, essential proteins involved in pre-rRNA processing and 40S ribosomal subunit assembly, are included in this subfamily. Fcf1 is a component of the small subunit (SSU) processome and an essential nucleolar protein required for processing of the 18S pre-rRNA at sites A0-A2. These PIN (PilT N terminus) domains are homologs of flap endonuclease-1 (FEN1)-like PIN domains, but apparently lack the H3TH domain or extensive arch/clamp region seen in the latter. PIN domains typically contain three or four conserved acidic residues (putative metal-binding, active site residues). The Fcf1-Utp23 homolog PIN domain subfamily has three of these conserved acidic residues rather than the four seen in the Fcf1 PIN domain subfamily. Length = 147

>gnl|CDD|189022 cd09852, PIN_SF, PIN (PilT N terminus) domain: Superfamily

 Score = 57.9 bits (140), Expect = 1e-11
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 12/94 (12%)

Query: 68  LVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL-------GQKYRVALR 120
           ++DT+ + F +  ++ L K +   L    T  I   V+AEL KL        +K RVA  
Sbjct: 1   VIDTSALLFRLLTEIRLRKSLKRLLEGDITVIIVFDVVAELLKLEAQKGLRRKKGRVAEL 60

Query: 121 IAKDPRF---ERLPCTHKGT--YADDCLVERVTQ 149
           + +D        +P  H     Y  D  +  + +
Sbjct: 61  LLRDLELLDLMGIPVVHAPGDLYEADAQIAALAK 94

PIN_SF The PIN (PilT N terminus) domain belongs to a large nuclease superfamily with representatives from eukaryota, eubacteria, and archaea. PIN domains were originally named for their sequence similarity to the N-terminal domain of an annotated pili biogenesis protein, PilT, a domain fusion between a PIN-domain and a PilT ATPase domain. The structural properties of the PIN domain indicate its putative active center, consisting of invariant acidic amino acid residues (putative metal-binding residues) is geometrically similar in the active center of structure-specific 5' nucleases (also known as Flap endonuclease-1-like), PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Seen here, are two major divisions in the PIN domain superfamily. The first major division, the structure-specific 5' nuclease family, is represented by FEN1, the 5'-3' exonuclease of DNA polymerase I, and T4 RNase H nuclease PIN domains. These 5' nucleases are involved in DNA replication, repair, and recombination. They are capable of both 5'-3' exonucleolytic activity and cleaving bifurcated DNA, in an endonucleolytic, structure-specific manner. Unique to FEN1-like nucleases, the PIN domain has a helical arch/clamp region (I domain) of variable length (approximately 16 to 800 residues) and, inserted within the C-terminal region of the PIN domain, a H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region. Both the H3TH domain (not included here) and the helical arch/clamp region are involved in DNA binding. With the exception of Mkt1, these nucleases have a carboxylate rich active site that is involved in binding essential divalent metal ion cofactors (Mg2+, Mn2+, Zn2+, or Co2+). The second major division of the PIN domain superfamily, the VapC-Smg6 family, includes such eukaryotic ribonucleases as, Smg6, an essential factor in nonsense-mediated mRNA decay; Rrp44, the catalytic subunit of the exosome; and Nob1, a ribosome assembly factor critical in pre-rRNA processing. A large percentage of members in this family are bacterial ribonuclease toxins of TA operons such as Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB, as well as, archaeal homologs, Pyrobaculum aerophilum Pea0151 and P. aerophilum Pae2754. Also included are the eukaryotic Fcf1/ Utp24 (FAF1-copurifying factor 1/U three-associated protein 24) and Utp23-like proteins. Components of the small subunit processome, Fcf1/Utp24 and Utp23 are essential proteins involved in pre-rRNA processing and 40S ribosomal subunit assembly. Length = 120

>gnl|CDD|189035 cd09865, PIN_Utp23, PIN domain of rRNA-processing protein, Utp23 (YOR004W), and other fungal homologs

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 64  PYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAK 123
           PY+VLVD +F+    + K+DL   +   L  K  P IT C +  L  LG+  + A+ +AK
Sbjct: 22  PYQVLVDADFLLDVTKFKMDLISQLERTLQGKVKPMITQCCIRALYALGKTVQRAIDLAK 81

Query: 124 DPRFERLPCTH 134
              FER  C H
Sbjct: 82  --TFERRRCNH 90

Saccharomyces cerevisiae Utp23 (U three-associated protein 23), component of the small subunit (SSU) processome, is an essential protein involved in pre-rRNA processing and 40S ribosomal subunit assembly. The PIN (PilT N terminus) domain of this protein is a homolog of flap endonuclease-1 (FEN1)-like PIN domains, but apparently lack the H3TH domain or extensive arch/clamp region seen in the latter. PIN domains typically contain three or four conserved acidic residues (putative metal-binding, active site residues. S. cerevisiae Utp23 lacks several of these key residues and mutation of the conserved acidic residues seen in Utp23 did not interfere with rRNA maturation and cell viability. Length = 148

>gnl|CDD|189049 cd09879, PIN_AF0591, PIN domain of Archaeoglobus fulgidus AF0591 protein and other similar archaeal homologs

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 14/87 (16%)

Query: 67  VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKY--------RVA 118
           VL+DTN + + +Q  +D+ + +    Y +    +   V+ ELEKL +K         RVA
Sbjct: 1   VLLDTNALMYPVQFGVDIFEELERLGYPEFV--VPSAVLEELEKLSRKGKGKDKRAARVA 58

Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVE 145
           L++A+      +  +  G  ADD ++E
Sbjct: 59  LQLAERC---EVVESEGG-PADDAILE 81

PIN (PilT N terminus) domain of Archaeoglobus fulgidus AF0591 protein and other similar uncharacterized archaeal homologs are included in this family. These PIN domains are structural homologs of flap endonuclease-1 (FEN1)-like PIN domains, but lack the extensive arch/clamp region and the H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region, seen in FEN1-like PIN domains. PIN domains within this subgroup contain four highly conserved acidic residues (putative metal-binding, active site residues) which cluster at the C-terminal end of the beta-sheet and form a negatively charged pocket near the center of the molecule. Length = 117

>gnl|CDD|214771 smart00670, PINc, Large family of predicted nucleotide-binding domains

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 20/100 (20%)

Query: 65  YRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELE-----------KLGQ 113
            +V++DTN +   +     LEK +      K    I   V+ ELE           +L  
Sbjct: 1   MKVVLDTNVLIDGLIRDA-LEKLLEK----KGEVYIPQTVLEELEYLALRSLKKLEELAL 55

Query: 114 KYRVALRIAKDPRFERLPCTHKGTYA----DDCLVERVTQ 149
           + ++ L++ K+ R E               +D L+    +
Sbjct: 56  EGKIILKVLKEERIEEEILERLSLKLELLPNDALILATAK 95

From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG3165	195	consensus Predicted nucleic-acid-binding protein,	100.0
KOG3164	236	consensus Uncharacterized proteins of PilT N-term.	99.97
COG1412	136	Uncharacterized proteins of PilT N-term./Vapc supe	99.94
PF04900	101	Fcf1: Fcf1; InterPro: IPR006984 This family is com	99.51
smart00670	111	PINc Large family of predicted nucleotide-binding	96.85
PF13638	133	PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_	95.53
PF13470	119	PIN_3: PIN domain	92.65
TIGR00305	114	probable toxin-antitoxin system toxin component, P	91.49
PF01850	121	PIN: PIN domain; InterPro: IPR002716 The PilT prot	87.07
TIGR00028	142	Mtu_PIN_fam Mycobacterium tuberculosis PIN domain	86.13
COG2402	135	Predicted nucleic acid-binding protein, contains P	85.38

>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]

Probab=100.00  E-value=2.6e-61  Score=380.15  Aligned_cols=148  Identities=73%  Similarity=1.174  Sum_probs=140.4

Q ss_pred             CCccccchhHHHHhhccCccccccccccccCCCCccCCCCCCCcccCCCchHHHHHHhhCCCCCeEEEechHHHHHHHHc
Q 031926            1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQN   80 (150)
Q Consensus         1 mg~~k~~~k~a~~k~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fy~~n~~frpPYqVLvDtNFi~~~~q~   80 (150)
                      |||+|||||||.||+||+.+ .|++.+++.+.++++...++.++++||+||++||+||..++|||+|||||||||+|+++
T Consensus         1 mgk~kktrk~~~vk~~i~~k-~~~~~~dr~k~k~K~d~~~~~~~e~Pq~~s~lffqyn~~L~PPy~vivDTNFINfsi~~   79 (195)
T KOG3165|consen    1 MGKAKKTRKFAVVKRMIKTK-QRLKKKDRVKNKEKKDENELLTREVPQVPSALFFQYNTTLGPPYHVIVDTNFINFSIQN   79 (195)
T ss_pred             CCcccchHHHHHHHHHHHHH-HHHHHHHhhhcccCCCchhhhcccCcCcchhHHHhcccccCCCeEEEEecchhhHHHHh
Confidence            99999999999999999887 88888887665555555667799999999999999999999999999999999999999


Q ss_pred             CCChhhHHHhhhccccceeecHHHHHHHHHhhHhhHHHHHhhcCCCceEeecCCCCCCHHHHHHHHhhh
Q 031926           81 KLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQ  149 (150)
Q Consensus        81 Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~~~~~Al~iaKd~r~e~~kC~Hkg~~addCI~~~v~~  149 (150)
                      |+||+++||+||+++|+|+||+|||+|||+||++|++||++|+||||+|++|.|+||||||||+++|+|
T Consensus        80 KiDi~~gmmdcl~Ak~~pcitDCVmaELEkLg~kyrvALri~kDpr~eRL~C~HKGTYADDClv~RV~q  148 (195)
T KOG3165|consen   80 KIDLFEGMMDCLYAKCIPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQ  148 (195)
T ss_pred             HHHHHHHHHHHHHhccccchhHHHHHHHHHhcchhhhhhhhhcCCcccccccccCCcchhhHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999987

>KOG3164 consensus Uncharacterized proteins of PilT N-term

Probab=99.97  E-value=6.4e-31  Score=215.19  Aligned_cols=95  Identities=36%  Similarity=0.576  Sum_probs=91.6

Q ss_pred             HHHHHHhhCCCCCeEEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhHhhHHHHHhhcCCCceEee
Q 031926           52 ALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLP  131 (150)
Q Consensus        52 ~~fy~~n~~frpPYqVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~~~~~Al~iaKd~r~e~~k  131 (150)
                      ..||++|||||+|||||||++|++++++.+|+|.++|.++|+|.+++|||+|||.|||++|+.+.+|+.||+  +|++++
T Consensus        13 l~ff~~~fgfRePYQVLvD~tF~~a~~~~~i~l~~~i~r~l~~~vKL~tTqCvikele~~g~~l~ga~~iAK--~fe~~~   90 (236)
T KOG3164|consen   13 LKFFSVNFGFREPYQVLVDGTFCQAALQQKIGLDEQIKRYLQGEVKLMTTQCVIKELEELGKDLYGAKGIAK--QFEIRN   90 (236)
T ss_pred             eeeeeeccCccCceEEEehhHHHHHHHHhhhChHHHHHHHhcCCCeeeehHHHHHHHHHhCcchhhhHHHHH--HHhHhc
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999  899999


Q ss_pred             cCCCCC-CHHHHHHHHhh
Q 031926          132 CTHKGT-YADDCLVERVT  148 (150)
Q Consensus       132 C~Hkg~-~addCI~~~v~  148 (150)
                      |+|+.. +|+|||.++|.
T Consensus        91 C~H~~~~s~seCl~svv~  108 (236)
T KOG3164|consen   91 CNHKDARSPSECLRSVVR  108 (236)
T ss_pred             CCCCCCCCHHHHHHHHHh
Confidence            999754 99999999885

/Vapc superfamily [General function prediction only]

>COG1412 Uncharacterized proteins of PilT N-term

Probab=99.94  E-value=1.2e-27  Score=183.72  Aligned_cols=94  Identities=47%  Similarity=0.723  Sum_probs=87.1

Q ss_pred             HHHhhCCCCCeEEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhHhhHHHHH--hhcCCCceEeec
Q 031926           55 FTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR--IAKDPRFERLPC  132 (150)
Q Consensus        55 y~~n~~frpPYqVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~~~~~Al~--iaKd~r~e~~kC  132 (150)
                      |++|++|++||+||||||||+.+.++++||+++|+++++++++|+||+||++||++|+..++++.+  +|.. .+++++|
T Consensus         1 ~~~~~~~~~~~~VlvDTNfl~~~~q~~vdi~~~l~r~l~~~~~~~Ip~~Vi~EL~~l~~~~~~~~r~~ia~~-~~er~~~   79 (136)
T COG1412           1 FQDNFGFRKPYQVLVDTNFLLYPYQFKVDIFEELERLLGAKYKPAIPSCVIRELEKLKRKHRGKARIAIALK-YAERLEC   79 (136)
T ss_pred             CccccccCCceEEEecchHHHHHHHccCCHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchHHHHHHHH-HhhccCc
Confidence            578999999999999999999999999999999999999999999999999999999998887777  5542 6899999


Q ss_pred             CCCCCCHHHHHHHHhhh
Q 031926          133 THKGTYADDCLVERVTQ  149 (150)
Q Consensus       133 ~Hkg~~addCI~~~v~~  149 (150)
                      .|.+.||||||.+.+.+
T Consensus        80 ~~~~~~aDe~i~~~a~~   96 (136)
T COG1412          80 IHKGRYADECLLEAALK   96 (136)
T ss_pred             cccCCChHHHHHHHHHH
Confidence            99999999999999865

/Vapc superfamily [General function prediction only]

>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins

Probab=99.51  E-value=8.6e-15  Score=105.67  Aligned_cols=61  Identities=46%  Similarity=0.767  Sum_probs=55.1

Q ss_pred             HhhhccccceeecHHHHHHHHHhhHhhHHHHHhhcCCCceEeecCCCCC--CHHHHHHHHhhh
Q 031926           89 MDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGT--YADDCLVERVTQ  149 (150)
Q Consensus        89 ~~~L~~k~kp~iT~CVi~ELekLG~~~~~Al~iaKd~r~e~~kC~Hkg~--~addCI~~~v~~  149 (150)
                      +++|+++++|+||+||++||+.||+.++++..+|+..++++++|+|.+.  +|||||++++.+
T Consensus         1 ~~~L~~~~~~~vt~cVl~EL~~L~~~~~~~~~~a~~~~~~~~~c~h~~~~~~addci~~~~~~   63 (101)
T PF04900_consen    1 KKLLGGKVKPYVTQCVLEELESLGKKFKGALRIAKRKALERRKCNHKETPGSADDCILDLAGK   63 (101)
T ss_pred             CccccCccEEEecHHHHHHHHHhcccccchhhhhhchhhHhhcCCCCCCCcCHHHHHHHHhcc
Confidence            3689999999999999999999999999999999943499999999964  999999999853

>smart00670 PINc Large family of predicted nucleotide-binding domains

Probab=96.85  E-value=0.0082  Score=41.99  Aligned_cols=41  Identities=29%  Similarity=0.281  Sum_probs=32.6

Q ss_pred             EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhh
Q 031926           67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG  112 (150)
Q Consensus        67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG  112 (150)
                      +++|||++...+..  ++..   .....+..++||.+|+.||+.+.
T Consensus         1 ~vlDTnvli~~~~~--~~~~---~~~~~~~~~~i~~~v~~El~~~~   41 (111)
T smart00670        1 VVLDTNVLIDGLIG--KALE---KLLEKKGEVYIPPTVLEELEYLA   41 (111)
T ss_pred             CEeeHHHHHHHHHH--HHHH---HHHcCCCcEEECHHHHHHHHHHH
Confidence            58999999999876  3333   33334788999999999999976

From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi.

>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J

Probab=95.53  E-value=0.049  Score=39.76  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhh
Q 031926           67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG  112 (150)
Q Consensus        67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG  112 (150)
                      +++|||.+.....    +...+     ....++|+.+|+.||+.+.
T Consensus         1 ~V~DTnvll~~~~----~l~~~-----~~~~ivIP~~Vl~ELd~lk   37 (133)
T PF13638_consen    1 YVLDTNVLLHHPD----LLEKL-----EQNKIVIPLTVLEELDRLK   37 (133)
T ss_dssp             EEE-HHHHHHHHH----HHHHH-----SSSEEEEEHHHHHHHHHHH
T ss_pred             CEeehhHHhCChH----HHhcc-----ccCEEEechHHHHHHHHHh
Confidence            5899999997753    22333     7888999999999998874

>PF13470 PIN_3: PIN domain

Probab=92.65  E-value=0.27  Score=35.03  Aligned_cols=46  Identities=22%  Similarity=0.351  Sum_probs=36.3

Q ss_pred             EEEechHHHHHHHHcCCChhhHHHhh-hccccceeecHHHHHHHHHh
Q 031926           66 RVLVDTNFINFSIQNKLDLEKGMMDC-LYAKCTPCITDCVMAELEKL  111 (150)
Q Consensus        66 qVLvDtNFi~~~~q~Kldl~~~L~~~-L~~k~kp~iT~CVi~ELekL  111 (150)
                      +|++|||-+..++-+.=.....+... ..+.+.++++.-++.|++..
T Consensus         1 RVvlDTNVli~~ll~~~~~~~~l~~~~~~~~~~~~~s~~~l~E~~~v   47 (119)
T PF13470_consen    1 RVVLDTNVLISALLSREPAARKLLDLAEDGRIELYISPEILDELERV   47 (119)
T ss_pred             CEEEEechhHHHHhCCCchHHHHHHHHHcCCCeEEecHHHHHHHHHH
Confidence            58999999999987655444444444 46899999999999999965

>TIGR00305 probable toxin-antitoxin system toxin component, PIN family

Probab=91.49  E-value=0.53  Score=33.85  Aligned_cols=45  Identities=20%  Similarity=0.200  Sum_probs=34.9

Q ss_pred             EEEechHHHHHHHHcCCChhhHHHh-hhccccceeecHHHHHHH-HHh
Q 031926           66 RVLVDTNFINFSIQNKLDLEKGMMD-CLYAKCTPCITDCVMAEL-EKL  111 (150)
Q Consensus        66 qVLvDtNFi~~~~q~Kldl~~~L~~-~L~~k~kp~iT~CVi~EL-ekL  111 (150)
                      +|++|||.+..++-+.-. ...+.. +..+.+.++++.-++.|+ +.|
T Consensus         1 rvvlDTNVli~all~~~~-~~~l~~~~~~~~~~~~~s~~~l~E~~~~l   47 (114)
T TIGR00305         1 KVVIDTNVWISALIWKGL-PGKLIKLIIDNKIVNCTSVEILQEVEFVL   47 (114)
T ss_pred             CEEEEhHHHHHHHhCCCC-HHHHHHHHHhCCEEEEECHHHHHHHHHHH
Confidence            489999999999887655 333443 356889999999999999 444

This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.

>PF01850 PIN: PIN domain; InterPro: IPR002716 The PilT protein, N-terminal domain (PIN) is a compact domain of about 100 amino acids

Probab=87.07  E-value=1.4  Score=30.44  Aligned_cols=47  Identities=19%  Similarity=0.195  Sum_probs=34.3

Q ss_pred             EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhHh
Q 031926           67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK  114 (150)
Q Consensus        67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~~  114 (150)
                      |+||||++...+ ..=+-.+...+.+.....++++.=++.|+...-..
T Consensus         1 i~lDTsili~~~-~~~~~~~~~~~~~~~~~~~~is~~~~~E~~~~~~~   47 (121)
T PF01850_consen    1 ILLDTSILIALL-RDEENHEKARELLERAIEIVISSLVLAELLYVLRR   47 (121)
T ss_dssp             EEE-HHHHHHHH-SHSCHHHHHHHHHHTHSEEEEEHHHHHHHHHHHHH
T ss_pred             EEEcChhhcccc-CCChhHHHHHHHHhcCCCEEEcHHHHHHHHHHhhh
Confidence            799999999999 33344455556665558899999999999876443

The domain has two nearly invariant aspartates and forms a coiled-coil with other monomer units to polymerise a pilus fibre []. The function of the PIN domain is unknown but a role in signalling appears likely given the presence of this domain in some bacterial plasmid stability proteins and Dis3 from yeast that is implicated in mitotic control [].; PDB: 3TND_G 2H1O_B 2BSQ_B 2H1C_A 2FE1_A 3ZVK_C 1V8P_F 1V8O_C 3H87_A 1O4W_A ....

>TIGR00028 Mtu_PIN_fam Mycobacterium tuberculosis PIN domain family

Probab=86.13  E-value=0.67  Score=33.39  Aligned_cols=43  Identities=12%  Similarity=0.050  Sum_probs=28.8

Q ss_pred             EEechHHHHHHHHcCCChh----hHHHhhhccccceeecHHHHHHHHH
Q 031926           67 VLVDTNFINFSIQNKLDLE----KGMMDCLYAKCTPCITDCVMAELEK  110 (150)
Q Consensus        67 VLvDtNFi~~~~q~Kldl~----~~L~~~L~~k~kp~iT~CVi~ELek  110 (150)
                      ++||||.+.+.+...=...    +.+.+. .....++++.-++.|+..
T Consensus         2 i~lDTnvli~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~vl~E~~~   48 (142)
T TIGR00028         2 LLLDVNVLLAAVNRDHPHHDAARAWLDRF-AAGGDWATCPLTLAGFVR   48 (142)
T ss_pred             ccchhhHHHHhcCCCCcchHHHHHHHHHH-hcCCCceechhhhhhhee
Confidence            6899999998887432222    223332 244567788899999865

Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see Pfam pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis. Two more are now found in Synechococcus sp. WH8102. The specific function is unknown but may be in signal transduction.

>COG2402 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]

Probab=85.38  E-value=1.1  Score=34.46  Aligned_cols=47  Identities=19%  Similarity=0.183  Sum_probs=32.3

Q ss_pred             EEechHHHHHHHHcCCChhhHHHhhhccc-----cceeecHHHHHHHHHhhH
Q 031926           67 VLVDTNFINFSIQNKLDLEKGMMDCLYAK-----CTPCITDCVMAELEKLGQ  113 (150)
Q Consensus        67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k-----~kp~iT~CVi~ELekLG~  113 (150)
                      |||||||+.+-...+-.=-+.-..++...     -.+++++|++.|...|-+
T Consensus         2 v~vDT~~~~a~~~~~d~~H~~a~~~~~~~~~~~~~~~~~~~~v~~e~~~l~k   53 (135)
T COG2402           2 VLVDTSVLLALFDKRDKNHEAAVQLFVSLADNKFRRLVVSDHVLDETLTLLK   53 (135)
T ss_pred             EEEechHHHHHHhchhhhHHHHHHHHhhcccCccceEEEeeeeHHHHHHHHH
Confidence            89999999887765543322222333332     268999999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
1o4w_A	147	PIN (PILT N-terminus) domain; structural genomics,	4e-28

>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1 Length = 147

 Score =  100 bits (251), Expect = 4e-28
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 66  RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKD- 124
             +VDTN + +   NK D+   + +  +++    IT  V  ELEKL    R   ++A   
Sbjct: 25  CAVVDTNVLMYVYLNKADVVGQLREFGFSR--FLITASVKRELEKLEMSLRGKEKVAARF 82

Query: 125 --PRFERLPCTHKGTYADDCLVERVTQ 149
                E        +  D  L+E   +
Sbjct: 83  ALKLLEHFEVVETESEGDPSLIEAAEK 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
1o4w_A	147	PIN (PILT N-terminus) domain; structural genomics,	99.61
2dok_A	186	Telomerase-binding protein EST1A; telomerase-assoc	96.42
3ix7_A	134	Uncharacterized protein TTHA0540; unknown function	96.19
2hwy_A	164	Protein SMG5; RNA degradation, decay, NMD, EST1A,	90.17
3i8o_A	142	KH domain-containing protein MJ1533; APC89320.5, m	88.51
1v96_A	149	Hypothetical protein PH0500; rossmann fold, tRNA s	87.18
3zvk_A	134	VAPC2, toxin of toxin-antitoxin system; antitoxin-	86.74
3tnd_A	132	TRNA(FMet)-specific endonuclease VAPC; PIN domain,	83.25
1w8i_A	156	Putative VAPC ribonuclease AF_1683; structural gen	82.53

>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1

Probab=99.61  E-value=2.6e-15  Score=112.50  Aligned_cols=88  Identities=27%  Similarity=0.335  Sum_probs=68.5

Q ss_pred             HHHhhCCCCCeE-EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhH--------hhHHHHHhhcCC
Q 031926           55 FTHNTALGPPYR-VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ--------KYRVALRIAKDP  125 (150)
Q Consensus        55 y~~n~~frpPYq-VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~--------~~~~Al~iaKd~  125 (150)
                      ...|||||+||+ +++|||++..+++++.++.+.+.+++.  ..++||.||+.||+.+..        ..+.++.++.  
T Consensus        13 ~~~~~~~~~pmk~vvLDTNvli~~~~~~~~~~~~l~~~l~--~~~~I~~~vl~EL~~~~~~~~~~~~~~~~~~~~ll~--   88 (147)
T 1o4w_A           13 MEADRGRNNKVRCAVVDTNVLMYVYLNKADVVGQLREFGF--SRFLITASVKRELEKLEMSLRGKEKVAARFALKLLE--   88 (147)
T ss_dssp             ---------CCEEEEECHHHHHHHHHHTCCHHHHHHHTTE--EEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHT--
T ss_pred             hhhhhccCCCCCEEEEEhhHHHHHHHcCchHHHHHHHhcc--CCEEEcHHHHHHHHHHHhccCcchHHHHHHHHHHHh--
Confidence            467999999999 999999999999999999999999876  889999999999999863        4556777887  


Q ss_pred             CceEeecCCCCCCHHHHHHHHhhh
Q 031926          126 RFERLPCTHKGTYADDCLVERVTQ  149 (150)
Q Consensus       126 r~e~~kC~Hkg~~addCI~~~v~~  149 (150)
                      +++.+.|+ .| + |+||++.+.+
T Consensus        89 ~~~vv~~~-~~-~-D~~Ila~A~~  109 (147)
T 1o4w_A           89 HFEVVETE-SE-G-DPSLIEAAEK  109 (147)
T ss_dssp             TSEEECCS-SC-S-HHHHHHHHHH
T ss_pred             cCcEeeCC-CC-c-hHHHHHHHHH
Confidence            68889998 45 7 9999998753

>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A

Probab=96.42  E-value=0.0048  Score=47.44  Aligned_cols=41  Identities=24%  Similarity=0.215  Sum_probs=30.9

Q ss_pred             CeEEEechHHHHHHHHcCCChhhHHHhhhc-cccceeecHHHHHHHHHh
Q 031926           64 PYRVLVDTNFINFSIQNKLDLEKGMMDCLY-AKCTPCITDCVMAELEKL  111 (150)
Q Consensus        64 PYqVLvDtNFi~~~~q~Kldl~~~L~~~L~-~k~kp~iT~CVi~ELekL  111 (150)
                      |..+++|||+|+....       .|.+... +...++|+..|+.||+.|
T Consensus        12 ~~~~VlDTNvLl~~~~-------~l~~~~~~~~~~viIP~~VleELd~l   53 (186)
T 2dok_A           12 PLFLVPDTNGFIDHLA-------SLARLLESRKYILVVPLIVINELDGL   53 (186)
T ss_dssp             EEEEEECHHHHHHHHH-------HHHHHHHHTSSEEEEEHHHHHHHHHH
T ss_pred             CCEEEEEhHHHHcCHH-------HHHHHHcCCCeEEEECHHHHHHHHHh
Confidence            4468999999977643       3444332 457899999999999998

>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}

Probab=96.19  E-value=0.021  Score=42.75  Aligned_cols=73  Identities=19%  Similarity=0.204  Sum_probs=47.2

Q ss_pred             EEechHHHHHHHHcCCChhhHHHhhhccc---cceeecHHHHHHHHHhh--------HhhHHHHHhhcC----CCceEee
Q 031926           67 VLVDTNFINFSIQNKLDLEKGMMDCLYAK---CTPCITDCVMAELEKLG--------QKYRVALRIAKD----PRFERLP  131 (150)
Q Consensus        67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k---~kp~iT~CVi~ELekLG--------~~~~~Al~iaKd----~r~e~~k  131 (150)
                      .++|||+|...         .+.+.+...   -.++|+.+|+.||+.+.        .+-+.+|++.+.    ..++...
T Consensus         8 ~vlDTSviIdG---------ri~~~~~~gf~eg~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~~vei~~   78 (134)
T 3ix7_A            8 KVLDTSVLVDG---------RVAEVAAVGFLEGPLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAAPLEVLE   78 (134)
T ss_dssp             EEECHHHHHHC---------HHHHHHTTTCCCSCEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHSCEEEEC
T ss_pred             eEcccceEEec---------HHHHHHHhccccCceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCEEEeC
Confidence            47799999843         233333222   26999999999999996        235567766651    1134443


Q ss_pred             cCCC-CCCHHHHHHHHhhh
Q 031926          132 CTHK-GTYADDCLVERVTQ  149 (150)
Q Consensus       132 C~Hk-g~~addCI~~~v~~  149 (150)
                       .-. +..+|+-|++++.+
T Consensus        79 -~~~~~~~vD~~ll~lA~~   96 (134)
T 3ix7_A           79 -TTPKGESVDEKLLFLARD   96 (134)
T ss_dssp             -CCCSCSSHHHHHHHHHHH
T ss_pred             -CCCCcccHHHHHHHHHHH
Confidence             222 24799999998864

>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens}

Probab=90.17  E-value=0.42  Score=36.94  Aligned_cols=50  Identities=16%  Similarity=0.217  Sum_probs=36.6

Q ss_pred             EEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhH---hhHHHHHhh
Q 031926           67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ---KYRVALRIA  122 (150)
Q Consensus        67 VLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~---~~~~Al~ia  122 (150)
                      .++|||++...+.    +.+.|..  ..+..++|+.=|+.||..|..   ..|.|++..
T Consensus         5 lVlDTN~Li~~l~----~i~~l~~--~~~~~IvIP~~Vi~ELD~LK~~~~~AR~Air~L   57 (164)
T 2hwy_A            5 LVPDTQALCHHLP----VIRQLAT--SGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYL   57 (164)
T ss_dssp             EEECHHHHHHCHH----HHHHHHH--HSSSEEEECHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             EEechHHHHhCHH----HHHHHHh--CCCcEEEEcHHHHHHHHHhccCCHHHHHHHHHH
Confidence            5689999988553    5555533  257889999999999999954   466666654

>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}

Probab=88.51  E-value=0.74  Score=34.67  Aligned_cols=53  Identities=19%  Similarity=0.111  Sum_probs=35.1

Q ss_pred             EEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhH----hhHHHHHhhc
Q 031926           66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ----KYRVALRIAK  123 (150)
Q Consensus        66 qVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~----~~~~Al~iaK  123 (150)
                      .+++|||-|....     |.+.+..-+.....++|+..|+.||+.+..    .-+.+|.+.+
T Consensus         5 ~~vlDTSviIdGr-----I~~~~~~g~leg~~iiIP~~Vl~EL~~~a~~~r~~GrrGLe~L~   61 (142)
T 3i8o_A            5 KVCVDTCVVIDGR-----ITELIERGKLKDATIIIPEAVVSELEYQANMGREIGYKGIEELR   61 (142)
T ss_dssp             EEEECHHHHHTTH-----HHHHHHTTTTTTCEEEEEHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             EEEeecceEEEcH-----HHHHHHcCCccCCeEEehHHHHHHHHHHHHccchhhHHHHHHHH
Confidence            5899999998433     333333333333469999999999999964    3345666655

>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A

Probab=87.18  E-value=0.52  Score=33.45  Aligned_cols=45  Identities=13%  Similarity=0.041  Sum_probs=32.0

Q ss_pred             CeEEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHh
Q 031926           64 PYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL  111 (150)
Q Consensus        64 PYqVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekL  111 (150)
                      +-.+++|||.+...+.   +-...+.+.+.....++++.-++.|+...
T Consensus         4 ~~~~llDTnvli~~l~---~~~~~~~~~~~~~~~~~is~i~~~El~~~   48 (149)
T 1v96_A            4 PPDITFDSLALIKMHS---QNMKRILEVTLAKFTVNLSIVTVYRYLTA   48 (149)
T ss_dssp             CSEEEECHHHHHHHTS---GGGHHHHHHHHHHCEEEEEHHHHHHHHHH
T ss_pred             CCEEEeehHHHHHHHc---cchHHHHHHHhcCCCEEeeHhhHHHHHHH
Confidence            3469999999999886   22234444443335688999999999863

>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}

Probab=86.74  E-value=1.1  Score=31.23  Aligned_cols=45  Identities=22%  Similarity=0.195  Sum_probs=32.8

Q ss_pred             EEEechHHHHHHHHcCCC-hhhHHHhhhccccceeecHHHHHHHHHh
Q 031926           66 RVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKL  111 (150)
Q Consensus        66 qVLvDtNFi~~~~q~Kld-l~~~L~~~L~~k~kp~iT~CVi~ELekL  111 (150)
                      .+|+|||.+...+...-+ +.+.+..... .-.++|+.-++.|+...
T Consensus         2 ~~llDTnvli~~~~~~~~~~~~~l~~~~~-~~~~~is~i~~~El~~~   47 (134)
T 3zvk_A            2 IYMLGTNICVYAINKHPDSYYNNLELLAK-NNTIAISSIVLAELQYG   47 (134)
T ss_dssp             EEEECHHHHHHHHHHCCHHHHHHHHHHHT-TSEEEEEHHHHHHHHHH
T ss_pred             eEEeeHHHHHHHHcCCcHHHHHHHHhcCc-CCcEEeeheeHHHHHHH
Confidence            589999999999986643 3344444322 14789999999999864

>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}

Probab=83.25  E-value=1.5  Score=30.26  Aligned_cols=43  Identities=26%  Similarity=0.327  Sum_probs=32.3

Q ss_pred             EEEechHHHHHHHHcCCC-hhhHHHhhhccccceeecHHHHHHHHHh
Q 031926           66 RVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKL  111 (150)
Q Consensus        66 qVLvDtNFi~~~~q~Kld-l~~~L~~~L~~k~kp~iT~CVi~ELekL  111 (150)
                      .+|+|||.+...+...-+ +.+.+....   -.++++.-++.|+...
T Consensus         3 ~~llDTnvli~~~~~~~~~~~~~l~~~~---~~~~iS~i~~~El~~~   46 (132)
T 3tnd_A            3 KFMLDTNICIFTIKNKPASVRERFNLNQ---GKMCISSVTLMELIYG   46 (132)
T ss_dssp             CEEECHHHHHHHHHHCCHHHHHHHHHHT---TSEEEEHHHHHHHHHH
T ss_pred             eeeeeHHHHHHHHcCCcHHHHHHHHhcC---CCEEeeHHHHHHHHHH
Confidence            589999999999986643 344454432   4689999999999864

>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1

Probab=82.53  E-value=1.9  Score=31.05  Aligned_cols=46  Identities=15%  Similarity=-0.047  Sum_probs=32.9

Q ss_pred             EEEechHHHHHHHHcCCChhh----HHH-hhhccccceeecHHHHHHHHHh
Q 031926           66 RVLVDTNFINFSIQNKLDLEK----GMM-DCLYAKCTPCITDCVMAELEKL  111 (150)
Q Consensus        66 qVLvDtNFi~~~~q~Kldl~~----~L~-~~L~~k~kp~iT~CVi~ELekL  111 (150)
                      .++||||++...+...=+..+    -+. ....+...++|+.-|+.|+...
T Consensus         2 mi~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~   52 (156)
T 1w8i_A            2 AALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTL   52 (156)
T ss_dssp             EEEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHH
T ss_pred             eEEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHH
Confidence            489999999999875333222    233 4444467789999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1o4wa_	125	c.120.1.1 (A:) Hypothetical protein AF0591 {Archae	1e-23

>d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 125

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: PIN domain
domain: Hypothetical protein AF0591
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 86.8 bits (215), Expect = 1e-23
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 66  RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKD- 124
             +VDTN + +   NK D+   + +  +++    IT  V  ELEKL    R   ++A   
Sbjct: 4   CAVVDTNVLMYVYLNKADVVGQLREFGFSRF--LITASVKRELEKLEMSLRGKEKVAARF 61

Query: 125 --PRFERLPCTHKGTYADDCLVERVTQ 149
                E        +  D  L+E   +
Sbjct: 62  ALKLLEHFEVVETESEGDPSLIEAAEK 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1o4wa_	125	Hypothetical protein AF0591 {Archaeon Archaeoglobu	99.65
d1w8ia_	155	Hypothetical protein AF1683 {Archaeoglobus fulgidu	93.28
d2fe1a1	130	Conserved hypothetical protein PAE0151 {Pyrobaculu	88.08

>d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: PIN domain
domain: Hypothetical protein AF0591
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.65  E-value=4.4e-17  Score=118.84  Aligned_cols=81  Identities=27%  Similarity=0.275  Sum_probs=65.0

Q ss_pred             eEEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHhhHhhHHHHHhhcCCCceEeecC-----CCCCCH
Q 031926           65 YRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCT-----HKGTYA  139 (150)
Q Consensus        65 YqVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekLG~~~~~Al~iaKd~r~e~~kC~-----Hkg~~a  139 (150)
                      ..||||||||++++++++|+.++|+++  +.++++||.||+.||++|+++.+++...++  ++....|+     +.+.++
T Consensus         3 ~~~llDtn~l~~~~~~~id~~~~l~~~--~~~~~~ip~~Vi~EL~~L~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~   78 (125)
T d1o4wa_           3 RCAVVDTNVLMYVYLNKADVVGQLREF--GFSRFLITASVKRELEKLEMSLRGKEKVAA--RFALKLLEHFEVVETESEG   78 (125)
T ss_dssp             EEEEECHHHHHHHHHHTCCHHHHHHHT--TEEEEEEEHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHTTSEEECCSSCS
T ss_pred             ceEEEecHHHHHHHHcCCcHHHHHHhh--cCceEEecHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHhCCCCCCCCcH
Confidence            469999999999999999999999995  567899999999999999987665555544  33333343     345689


Q ss_pred             HHHHHHHhhh
Q 031926          140 DDCLVERVTQ  149 (150)
Q Consensus       140 ddCI~~~v~~  149 (150)
                      ||||++.+.+
T Consensus        79 Dd~il~~a~~   88 (125)
T d1o4wa_          79 DPSLIEAAEK   88 (125)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>d1w8ia_ c.120.1.1 (A:) Hypothetical protein AF1683 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: PIN domain
domain: Hypothetical protein AF1683
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.28  E-value=0.18  Score=35.59  Aligned_cols=68  Identities=12%  Similarity=-0.012  Sum_probs=43.1

Q ss_pred             EEEechHHHHHHHHcCCC----hhhHHHhhhccc-cceeecHHHHHHHHHh-hH----hhHHHHHhhcCCCceEeecC
Q 031926           66 RVLVDTNFINFSIQNKLD----LEKGMMDCLYAK-CTPCITDCVMAELEKL-GQ----KYRVALRIAKDPRFERLPCT  133 (150)
Q Consensus        66 qVLvDtNFi~~~~q~Kld----l~~~L~~~L~~k-~kp~iT~CVi~ELekL-G~----~~~~Al~iaKd~r~e~~kC~  133 (150)
                      .+|||||++.+.+...=.    -.+.+..++.++ ..+++|..|+.|+..+ +.    .......+...+.++...++
T Consensus         2 ~~lvDT~~liA~~~~~D~~H~~a~~~~~~~~~~~~~~lvtt~~VL~E~~~ll~~~~~~a~~~l~~ll~~~~v~Vi~~~   79 (155)
T d1w8ia_           2 AALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVESGVLNIIYTD   79 (155)
T ss_dssp             EEEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTTSSSEEECCC
T ss_pred             eEEEEhHHHHHHHcCCchhHHHHHHHHHHHHhccCCceeecchhHHHHHHHHHhhhHHHHHHHHHHHhCCCeEEEecc
Confidence            689999999999864422    233445555544 4689999999998765 22    22222334444567777664

>d2fe1a1 c.120.1.1 (A:1-130) Conserved hypothetical protein PAE0151 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: PIN domain
domain: Conserved hypothetical protein PAE0151
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.08  E-value=0.21  Score=32.68  Aligned_cols=46  Identities=11%  Similarity=0.008  Sum_probs=35.7

Q ss_pred             eEEEechHHHHHHHHcCCChhhHHHhhhccccceeecHHHHHHHHHh
Q 031926           65 YRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL  111 (150)
Q Consensus        65 YqVLvDtNFi~~~~q~Kldl~~~L~~~L~~k~kp~iT~CVi~ELekL  111 (150)
                      .+|+||||++...+... +-.+...+.+.....++++..++.|+...
T Consensus         1 M~ivlDTnvli~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~E~~~~   46 (130)
T d2fe1a1           1 MELVVDASAIAALYVPE-ERSEQAERAVSQAQELHTLDLAAYEVAND   46 (130)
T ss_dssp             CEEEECHHHHHTTSSSC-CCCHHHHHHHHHCSEEEEEHHHHHHHHHH
T ss_pred             CEEEEehHHHHHHHhCC-ccHHHHHHHHhhcCCEEecHHHHHHHHHH
Confidence            36899999999887643 34566667776667899999999999653