Citrus Sinensis ID: 031932

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MTISNLLHSPQTPLTLLHKPHNHHTRSSFLKSPSSSSFFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPRLPIVAEAADRQVL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtisnllhspqtpltllhkphnhhtrssflkspssssfftltnkvnhhqtittkskksdsadypdRLISAICyfypffdgiqygkyvitqftpiqlliqplipaikvfksfpfngfLVFLTLYFVVVRntnfsqvprlpivaEAADRQVL
Flexible Loop (DISEMBL)
mtisnllhspqtpLTLLHKPHNHHTRSSFLKSPSSSSFFTltnkvnhhqtittkskksdsadyPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTnfsqvprlpivaeaadrqvl
Low Complexity Region (SEG)
MTISNLLHSPQTPLTLLHKPHNHHTRssflkspssssffTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTpiqlliqplipAIKVFKSFPFNGflvfltlyfvvvRNTNFSQVPRLPIVAEAADRQVL
Disordered region (IsUnstruct)
***************************************************************PDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPRLPIV*********
Disordered Region (DISOPRED)
**************************************************************YPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPRLPIVAEAADRQV*
Disordered Region (DISEMBL)
MTISNLLHSPQTPLTLLHKP**************SSSFFTLTNKVNHH*************DYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPRLPIVAEAADRQVL
Disordered Region (DISPRO)
******LHSPQTPLTLLHKPH*HHTRSSF******************************SADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPRLPIVAEAADR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTISNLLHSPQTPLTLLHKPHNHHTRSSFLKSPSSSSFFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPRLPIVAEAADRQVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q9FM67	209	Protein TIC 20-v, chlorop	yes	no	0.613	0.440	0.673	7e-33
O82251	208	Protein TIC 20-II, chloro	no	no	0.8	0.576	0.328	2e-12
P73387	160	Tic20 family protein OS=S	N/A	no	0.546	0.512	0.341	5e-10
P51360	203	Tic20 family protein Ycf6	N/A	no	0.553	0.408	0.336	0.0007

>sp|Q9FM67|TI205_ARATH Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1

 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 75/92 (81%)

Query: 46  NHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAI 105
           +   T+  +SK  DS D  DR+ISA+CYFYPFFDGIQYGK++ITQ+ P Q+LIQPL PAI
Sbjct: 42  DRAATLVLQSKGDDSVDASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAI 101

Query: 106 KVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPR 137
           + FKSFPFNGFL+F+TLYFVVVRN NFS+  R
Sbjct: 102 RAFKSFPFNGFLIFITLYFVVVRNPNFSRYVR 133

May be involved in protein precursor import into chloroplasts. Not redundant with TIC20-I, TIC20-II or TIC20-IV.
Arabidopsis thaliana (taxid: 3702)

>sp|O82251|TI202_ARATH Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 17/137 (12%)

Query: 2   TISNLLHSPQT-PLTLLHKPHNHHTRSSFLKSPSSSSFFTLTNKVNHHQTITTKSKKSDS 60
           T++N L +P+  PL+L     +    S+F   PSS     LT + ++  T  T       
Sbjct: 11  TLTNPLSAPRCRPLSL-----SFPGSSTFSIRPSSRRATALTTRASYTPTPAT------- 58

Query: 61  ADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFL 120
               +R+IS   Y  PFF+ +QYG+++  Q+  + LL +P+ P + +++S P+  F+ F 
Sbjct: 59  ----ERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFF 114

Query: 121 TLYFVVVRNTNFSQVPR 137
            LY  VVRNT+FS+  R
Sbjct: 115 GLYLGVVRNTSFSRYVR 131

May be involved in protein precursor import into chloroplasts. Not redundant with TIC20-I, TIC20-IV or TIC20-V.

Arabidopsis thaliana (taxid: 3702)

>sp|P73387|YC60L_SYNY3 Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 47/82 (57%)

Query: 56  KKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNG 115
             + +AD  DR  SA+ Y  P  D   +G +++ QF  +Q++  P++P ++ +  FPF  
Sbjct: 2   ASNSTADGKDRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFAS 61

Query: 116 FLVFLTLYFVVVRNTNFSQVPR 137
           F++F+ L+  VVRN N S   R
Sbjct: 62  FIIFIVLFMAVVRNNNISHFIR 83

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P51360|YCF60_PORPU Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1

 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 12/95 (12%)

Query: 38  FFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQ-YGKYVITQF--TPI 94
           + TL   +N     TT+SK   S     RL+S I Y+ P F+G+Q +G+YV+  +    I
Sbjct: 28  YITLNTNIN-----TTESKTRLSI----RLVSIIPYYLPLFEGLQNFGQYVLPDYPVGAI 78

Query: 95  QLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRN 129
            L  + L+P +  + +    G + F  LY+V+VRN
Sbjct: 79  PLYKKILLPMLIFYMNHAILGLVTFFALYYVLVRN 113

Porphyra purpurea (taxid: 2787)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
296089919	212	unnamed protein product [Vitis vinifera]	0.826	0.584	0.626	2e-37
225461922	208	PREDICTED: protein TIC 20-v, chloroplast	0.673	0.485	0.738	7e-37
224132152	203	predicted protein [Populus trichocarpa]	0.8	0.591	0.643	2e-35
357495053	215	Ycf60-like protein [Medicago truncatula]	0.72	0.502	0.714	2e-35
224159522	140	predicted protein [Populus trichocarpa]	0.8	0.857	0.643	3e-35
356552589	211	PREDICTED: tic20 family protein-like [Gl	0.746	0.530	0.672	9e-35
356501638	211	PREDICTED: tic20 family protein-like iso	0.56	0.398	0.804	2e-34
356570214	208	PREDICTED: tic20 family protein-like [Gl	0.773	0.557	0.65	6e-34
449461063	212	PREDICTED: protein TIC 20-v, chloroplast	0.6	0.424	0.744	1e-31
15240567	209	uncharacterized protein [Arabidopsis tha	0.613	0.440	0.673	4e-31

>gi|296089919|emb|CBI39738.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/134 (62%), Positives = 98/134 (73%), Gaps = 10/134 (7%)

Query: 14  LTLLHKPHNHHTRSSFLKSP----SSSSFFTLTNKV------NHHQTITTKSKKSDSADY 63
           +T++++P      S+   SP       S  TLT K+         ++I  +SK S+SAD 
Sbjct: 3   ITIIYRPLLSPLSSTLQSSPLFPIRHPSLLTLTTKLRCPKAQERRRSIAAQSKGSNSADP 62

Query: 64  PDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLY 123
           PDRLISA+CYFYPFFDGIQYGKYV+TQFTPIQLLIQPL PAIKVFKSFPFNGFLVFLTLY
Sbjct: 63  PDRLISAVCYFYPFFDGIQYGKYVLTQFTPIQLLIQPLFPAIKVFKSFPFNGFLVFLTLY 122

Query: 124 FVVVRNTNFSQVPR 137
           FVVVRN NFS+  R
Sbjct: 123 FVVVRNRNFSRYVR 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461922|ref|XP_002267869.1| PREDICTED: protein TIC 20-v, chloroplastic [Vitis vinifera]

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 87/107 (81%), Gaps = 6/107 (5%)

Query: 37  SFFTLTNKV------NHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQ 90
           S  TLT K+         ++I  +SK S+SAD PDRLISA+CYFYPFFDGIQYGKYV+TQ
Sbjct: 26  SLLTLTTKLRCPKAQERRRSIAAQSKGSNSADPPDRLISAVCYFYPFFDGIQYGKYVLTQ 85

Query: 91  FTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPR 137
           FTPIQLLIQPL PAIKVFKSFPFNGFLVFLTLYFVVVRN NFS+  R
Sbjct: 86  FTPIQLLIQPLFPAIKVFKSFPFNGFLVFLTLYFVVVRNRNFSRYVR 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132152|ref|XP_002328198.1| predicted protein [Populus trichocarpa] gi|222837713|gb|EEE76078.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/129 (64%), Positives = 91/129 (70%), Gaps = 9/129 (6%)

Query: 10  PQTPLTLLHKPHNHHTRSSFLKSPSSSSFFTLTNKVNH-HQTITTKSKKSDSADYPDRLI 68
           PQ PLTL  KP        FL S  + SF     K     + I  KS  +DS D  DR+I
Sbjct: 7   PQAPLTLSQKP--------FLLSLRNPSFLPHARKWKGPRRLILAKSNGNDSVDTTDRII 58

Query: 69  SAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVR 128
           SA+CYFYPFFDGIQYGKYVITQF+PIQ LIQPL PAIKVFKSFP NGFLVFLTLYFVVVR
Sbjct: 59  SAVCYFYPFFDGIQYGKYVITQFSPIQALIQPLFPAIKVFKSFPLNGFLVFLTLYFVVVR 118

Query: 129 NTNFSQVPR 137
           N+NFS+  R
Sbjct: 119 NSNFSRYVR 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495053|ref|XP_003617815.1| Ycf60-like protein [Medicago truncatula] gi|355519150|gb|AET00774.1| Ycf60-like protein [Medicago truncatula]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 89/112 (79%), Gaps = 4/112 (3%)

Query: 30  LKSPSSSSFFTLTNKV---NHHQT-ITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGK 85
           L SP+ SS FTL  K    N  +T I +KS  SDSAD  DRLISA+CYFYPFFDGIQYGK
Sbjct: 28  LSSPNPSSLFTLPKKFTKSNKLRTLIVSKSNNSDSADASDRLISALCYFYPFFDGIQYGK 87

Query: 86  YVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPR 137
           +VITQF PIQ ++QPLIPAI+VFKSFPFNGFLVFLTLYF VVRN NFS+  R
Sbjct: 88  FVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTLYFFVVRNPNFSKYVR 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224159522|ref|XP_002338092.1| predicted protein [Populus trichocarpa] gi|222870804|gb|EEF07935.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/129 (64%), Positives = 91/129 (70%), Gaps = 9/129 (6%)

Query: 10  PQTPLTLLHKPHNHHTRSSFLKSPSSSSFFTLTNKVNH-HQTITTKSKKSDSADYPDRLI 68
           PQ PLTL  KP        FL S  + SF     K     + I  KS  +DS D  DR+I
Sbjct: 7   PQAPLTLSQKP--------FLLSLRNPSFLPHARKWKGPRRLILAKSNGNDSVDTTDRII 58

Query: 69  SAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVR 128
           SA+CYFYPFFDGIQYGKYVITQF+PIQ LIQPL PAIKVFKSFP NGFLVFLTLYFVVVR
Sbjct: 59  SAVCYFYPFFDGIQYGKYVITQFSPIQALIQPLFPAIKVFKSFPLNGFLVFLTLYFVVVR 118

Query: 129 NTNFSQVPR 137
           N+NFS+  R
Sbjct: 119 NSNFSRYVR 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552589|ref|XP_003544648.1| PREDICTED: tic20 family protein-like [Glycine max]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 89/116 (76%), Gaps = 4/116 (3%)

Query: 26  RSSFLKSPSSSSFFTLTNKVNH-HQT---ITTKSKKSDSADYPDRLISAICYFYPFFDGI 81
           +S+FL  P   +   L  K+   HQ    I  KS  SDSAD PDRLISA+CYFYPFFDGI
Sbjct: 20  QSTFLHPPPLLTLNILPKKLRKPHQLRTLIVAKSNGSDSADVPDRLISALCYFYPFFDGI 79

Query: 82  QYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPR 137
           QYGKYVITQF P+Q ++QPL+PAI+VFKSFPFNGFLVFLTLYFVVVRN NFS+  R
Sbjct: 80  QYGKYVITQFYPLQAIVQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSKYVR 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501638|ref|XP_003519631.1| PREDICTED: tic20 family protein-like isoform 1 [Glycine max] gi|356501640|ref|XP_003519632.1| PREDICTED: tic20 family protein-like isoform 2 [Glycine max]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/87 (80%), Positives = 77/87 (88%)

Query: 51  ITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKS 110
           I  KS  SDSAD PDRLISA+CYFYPFFDGIQYGKYVITQF P+Q ++QPL+PAI+VFKS
Sbjct: 49  IVAKSNGSDSADVPDRLISALCYFYPFFDGIQYGKYVITQFYPVQAIVQPLVPAIRVFKS 108

Query: 111 FPFNGFLVFLTLYFVVVRNTNFSQVPR 137
           FPFNGFLVFLTLYFVVVRN NFS+  R
Sbjct: 109 FPFNGFLVFLTLYFVVVRNPNFSKYVR 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570214|ref|XP_003553285.1| PREDICTED: tic20 family protein-like [Glycine max]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 78/120 (65%), Positives = 88/120 (73%), Gaps = 4/120 (3%)

Query: 22  NHHTRSSFLKSPSSSSFFTLTNKVNH-HQT---ITTKSKKSDSADYPDRLISAICYFYPF 77
           +  T   F  SPS  +   L  K+   HQ    I  KS  SDSAD PDRLISA+CYFYPF
Sbjct: 14  SEATSIHFSASPSLLTLNILPKKLRKPHQLRTLIVAKSNGSDSADVPDRLISALCYFYPF 73

Query: 78  FDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPR 137
           FD IQYGKYVITQF P+Q ++QPL+PAI+VFKSFPFNGFLVFLTLYFVVVRN NFS+  R
Sbjct: 74  FDCIQYGKYVITQFYPVQAIVQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSKYVR 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461063|ref|XP_004148263.1| PREDICTED: protein TIC 20-v, chloroplastic-like [Cucumis sativus] gi|449515197|ref|XP_004164636.1| PREDICTED: protein TIC 20-v, chloroplastic-like [Cucumis sativus]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/90 (74%), Positives = 76/90 (84%)

Query: 52  TTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSF 111
           T     ++SAD PDRLISAICYFYPFFDG+QYGKYVITQ+TP Q+LIQPL+PAI+VFKSF
Sbjct: 51  TGDDNNNNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSF 110

Query: 112 PFNGFLVFLTLYFVVVRNTNFSQVPRLPIV 141
           P N FLVFLTLYFVVVRN NFS+  R  I+
Sbjct: 111 PLNSFLVFLTLYFVVVRNPNFSRYVRFNIM 140

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240567|ref|NP_200382.1| uncharacterized protein [Arabidopsis thaliana] gi|75171614|sp|Q9FM67.1|TI205_ARATH RecName: Full=Protein TIC 20-v, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 20-V; Short=AtTIC20-v; Flags: Precursor gi|9758605|dbj|BAB09238.1| unnamed protein product [Arabidopsis thaliana] gi|25082851|gb|AAN72007.1| putative protein [Arabidopsis thaliana] gi|30023660|gb|AAP13363.1| At5g55710 [Arabidopsis thaliana] gi|332009288|gb|AED96671.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 75/92 (81%)

Query: 46  NHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAI 105
           +   T+  +SK  DS D  DR+ISA+CYFYPFFDGIQYGK++ITQ+ P Q+LIQPL PAI
Sbjct: 42  DRAATLVLQSKGDDSVDASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAI 101

Query: 106 KVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPR 137
           + FKSFPFNGFL+F+TLYFVVVRN NFS+  R
Sbjct: 102 RAFKSFPFNGFLIFITLYFVVVRNPNFSRYVR 133

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2162167	209	Tic20-V "AT5G55710" [Arabidops	0.586	0.421	0.5	7.1e-25
TAIR|locus:2043353	208	Tic20-II "translocon at the in	0.573	0.413	0.241	1.6e-07

TAIR|locus:2162167 Tic20-V "AT5G55710" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
 Identities = 44/88 (50%), Positives = 53/88 (60%)

Query:    50 TITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTXXXXXXXXXXXAIKVFK 109
             T+  +SK  DS D  DR+ISA+CYFYPFFDGIQYGK++ITQ+            AI+ FK
Sbjct:    46 TLVLQSKGDDSVDASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFK 105

Query:   110 SFPFNGXXXXXXXXXXXXRNTNFSQVPR 137
             SFPFNG            RN NFS+  R
Sbjct:   106 SFPFNGFLIFITLYFVVVRNPNFSRYVR 133

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

TAIR|locus:2043353 Tic20-II "translocon at the inner envelope membrane of chloroplasts 20-II" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 21/87 (24%), Positives = 41/87 (47%)

Query:    51 ITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTXXXXXXXXXXXAIKVFKS 110
             +TT++  + +    +R+IS   Y  PFF+ +QYG+++  Q+             + +++S
Sbjct:    46 LTTRASYTPTPA-TERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRS 104

Query:   111 FPFNGXXXXXXXXXXXXRNTNFSQVPR 137
              P+              RNT+FS+  R
Sbjct:   105 VPYASFVAFFGLYLGVVRNTSFSRYVR 131

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033373001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (208 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028499001	RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)			•	•			•		0.553
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)			•	•					0.545
	GSVIVG00023239001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (219 aa)			•	•					0.536
	GSVIVG00003429001	SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (182 aa)			•				•		0.532
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•	•					0.529
	GSVIVG00025097001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_32, whole genome shotg [...] (221 aa)			•	•					0.521
	GSVIVG00026057001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (168 aa)			•				•		0.515
	GSVIVG00035532001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (221 aa)			•				•		0.513
	GSVIVG00029202001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (297 aa)			•	•					0.510
	GSVIVG00028771001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (378 aa)			•	•					0.509

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
TIGR00994	267	3a0901s05TIC20 chloroplast protein import componen	100.0
PF09685	109	Tic20: Tic20-like protein; InterPro: IPR019109 Thi	95.4
COG4818	105	Predicted membrane protein [Function unknown]	94.11

>TIGR00994 3a0901s05TIC20 chloroplast protein import component, Tic20 family

Probab=100.00  E-value=2.7e-33  Score=236.48  Aligned_cols=89  Identities=15%  Similarity=0.190  Sum_probs=84.2

Q ss_pred             CCCChhhHHHHHHHhhhhchhhhhhHHHHHhhhhhHHHHHhhhhhHHHHHhhCChhH-HHHHHHHHHHHHhCCCCCCcch
Q 031932           59 DSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNG-FLVFLTLYFVVVRNTNFSQVPR  137 (150)
Q Consensus        59 g~~~~~dRilA~LpYlLPL~D~l~fG~~l~~qfP~l~~l~~Pl~Pl~~iy~siPF~~-livFf~Lyl~VVRN~~is~FIR  137 (150)
                      ..++||||++||+||++||+|+|+||+++++|||+++.+.+|+.|++.+|+++||++ +++||+||++||||+++|||||
T Consensus       111 ~kp~~w~RilA~LpYLLPL~dal~fg~~lf~qfP~L~~l~~pl~Pl~~i~~~lPf~~~lv~Ff~Lyl~VVRN~~iphFIR  190 (267)
T TIGR00994       111 EKPRWWWRTLACVPYLIPLHISWMYADTAYHLHPFLEKFDAITYPFLGAIGRLPTWFLMAYFLLAYMWVVRRKEWPHFFR  190 (267)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCCcchhhh
Confidence            357999999999999999999999999999999999999999999999999999998 6777799999999999999999


Q ss_pred             hhHhHhhhhh
Q 031932          138 LPIVAEAADR  147 (150)
Q Consensus       138 FN~mQAi~~~  147 (150)
                      ||+||||+=.
T Consensus       191 FNtMQAILLD  200 (267)
T TIGR00994       191 FHMMMGMLLE  200 (267)
T ss_pred             HHHHHHHHHH
Confidence            9999999743

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic20 protein.

>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20

Probab=95.40  E-value=0.024  Score=40.13  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=18.4

Q ss_pred             HHHHHHhCCCCCCcchhhHhHhhh
Q 031932          122 LYFVVVRNTNFSQVPRLPIVAEAA  145 (150)
Q Consensus       122 Lyl~VVRN~~is~FIRFN~mQAi~  145 (150)
                      +.+.++++++ +.|+|+|+.||+.
T Consensus        24 li~~~~~k~~-~~~vr~ha~qal~   46 (109)
T PF09685_consen   24 LIVWIVKKDK-SPFVRFHAKQALN   46 (109)
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHH
Confidence            3444677777 9999999999974

Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].

>COG4818 Predicted membrane protein [Function unknown]

Probab=94.11  E-value=0.038  Score=41.98  Aligned_cols=17  Identities=12%  Similarity=0.026  Sum_probs=13.8

Q ss_pred             CCCCCcchhhHhHhhhh
Q 031932          130 TNFSQVPRLPIVAEAAD  146 (150)
Q Consensus       130 ~~is~FIRFN~mQAi~~  146 (150)
                      ++=++||||||||+.+.
T Consensus        25 Ere~~FVrFHAmQS~lt   41 (105)
T COG4818          25 ERESKFVRFHAMQSFLT   41 (105)
T ss_pred             hccCcceeehhHHHHHH
Confidence            45578999999999763

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00