Citrus Sinensis ID: 031938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQV
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHcccccccccccccEEEcccccccEEEEcccccEEEEccccEEEEcccccHHHHHHHHHHHccccccEEEEEccccccEEcccEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccccccccccccccccHcccccccEEEEEcccEEEEEcccccHHHHHHHHHHHcHHccccEEEEccccccEccccEcccccEEccccccccEEEc
Coil and Loop (DISEMBL)
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLedsygtdfpsfmrrqkngylqlprgvtfwdndKEAELLRLgyvkpeviswsprILVLHNFLSMEECDYLRAIArphlqvstvvdtktgkgiksnvrtssgmflspeekkypmiqv
Flexible Loop (DISEMBL)
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGyvkpeviswsPRILVLHNFLSMEECDYLRAIARPhlqvstvvdtktgkgiksnvrtssgmflspeekkypmiqv
Low Complexity Region (SEG)
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQV
Disordered region (IsUnstruct)
******MKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDT******************************
Disordered Region (DISOPRED)
*****SM**VFGLLTFVTFGMIIGALFQLAFIRKL*****************************DNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPH******************VRTSSGMFLSPEEKK*PMI*V
Disordered Region (DISEMBL)
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQV
Disordered Region (DISPRO)
*VMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKL***********************************ELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQV
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
255641158	195	unknown [Glycine max]	0.98	0.753	0.746	7e-61
363814557	238	uncharacterized protein LOC100794585 [Gl	0.986	0.621	0.748	2e-60
356576923	287	PREDICTED: prolyl 4-hydroxylase subunit	0.986	0.515	0.741	4e-60
255637879	287	unknown [Glycine max]	0.986	0.515	0.748	6e-60
224069056	287	predicted protein [Populus trichocarpa]	0.986	0.515	0.735	1e-59
15224220	283	P4H isoform 1 [Arabidopsis thaliana] gi|	0.966	0.512	0.713	2e-54
449468746	290	PREDICTED: putative prolyl 4-hydroxylase	0.993	0.513	0.677	3e-52
297824279	283	AT-P4H-1 [Arabidopsis lyrata subsp. lyra	0.966	0.512	0.693	4e-52
357445147	281	Prolyl 4-hydroxylase subunit alpha-1 [Me	0.933	0.498	0.682	8e-49
225433714	287	PREDICTED: prolyl 4-hydroxylase subunit	0.986	0.515	0.615	1e-48

>gi|255641158|gb|ACU20856.1| unknown [Glycine max]

 Score =  238 bits (607), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 112/150 (74%), Positives = 132/150 (88%), Gaps = 3/150 (2%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQ---KNGYLQLPR 59
           MAP+M+IVFGLLTFVT GMIIGAL QLA IR+LEDS+GTD   F R +    + +LQLPR
Sbjct: 1   MAPAMRIVFGLLTFVTVGMIIGALSQLAIIRRLEDSHGTDSLPFSRLRGLDTDRHLQLPR 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           G+ FW+NDKEAE+LRLGYVKPEV++WSPRI++LHNFLSMEECDYLRAIA P L +S VVD
Sbjct: 61  GIPFWNNDKEAEVLRLGYVKPEVLNWSPRIILLHNFLSMEECDYLRAIALPRLHISNVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQ 149
           TKTGKGIKS+VRTSSGMFL+P+E+KYPM+Q
Sbjct: 121 TKTGKGIKSDVRTSSGMFLNPQERKYPMVQ 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814557|ref|NP_001242754.1| uncharacterized protein LOC100794585 [Glycine max] gi|255628535|gb|ACU14612.1| unknown [Glycine max]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 132/151 (87%), Gaps = 3/151 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQ---KNGYLQLPR 59
           MAP+M+IVFGLLTFVT GMIIGAL QLA IR+LEDSYGTD   F R +    + +LQLPR
Sbjct: 1   MAPAMRIVFGLLTFVTVGMIIGALSQLAIIRRLEDSYGTDSLPFRRLRGLDTDRHLQLPR 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           GV FW+NDKEAE+LRLGYVKPEV++WSPRI++LHNFLSMEECDYLRA+A P L +STVVD
Sbjct: 61  GVPFWNNDKEAEILRLGYVKPEVLNWSPRIILLHNFLSMEECDYLRALALPRLHISTVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQV 150
           TKTGKGIKS+VRTSSGMFL+ +E+KYPM+Q 
Sbjct: 121 TKTGKGIKSDVRTSSGMFLNSKERKYPMVQA 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576923|ref|XP_003556579.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Glycine max]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 132/151 (87%), Gaps = 3/151 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQ---KNGYLQLPR 59
           MAP+M+IVFGLLTFVT GMIIGAL QLA IR+LEDS+GTD   F R +    + +LQLPR
Sbjct: 1   MAPAMRIVFGLLTFVTVGMIIGALSQLAIIRRLEDSHGTDSLPFSRLRGLDTDRHLQLPR 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           G+ FW+NDKEAE+LRLGYVKPEV++WSPRI++LHNFLSMEECDYLRAIA P L +S VVD
Sbjct: 61  GIPFWNNDKEAEVLRLGYVKPEVLNWSPRIILLHNFLSMEECDYLRAIALPRLHISNVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQV 150
           TKTGKGIKS+VRTSSGMFL+P+E+KYPM+Q 
Sbjct: 121 TKTGKGIKSDVRTSSGMFLNPQERKYPMVQA 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637879|gb|ACU19258.1| unknown [Glycine max]

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 132/151 (87%), Gaps = 3/151 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQ---KNGYLQLPR 59
           MAP+M+IVFGLLTFVT GMIIGAL QLA IR+LEDSYGTD   F R +    + +LQLPR
Sbjct: 1   MAPAMRIVFGLLTFVTVGMIIGALSQLAIIRRLEDSYGTDSLPFRRLRGLDTDRHLQLPR 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           GV FW+NDKEAE+LRLGYVKPEV++WSPRI++LHNFLSMEECDYLRA+A P L +STVVD
Sbjct: 61  GVPFWNNDKEAEILRLGYVKPEVLNWSPRIILLHNFLSMEECDYLRALALPRLHISTVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQV 150
           TKTGKGIKS+VRTSSGMFL+ +E+KYPM+Q 
Sbjct: 121 TKTGKGIKSDVRTSSGMFLNSKERKYPMVQA 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069056|ref|XP_002302889.1| predicted protein [Populus trichocarpa] gi|222844615|gb|EEE82162.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 128/151 (84%), Gaps = 3/151 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQK---NGYLQLPR 59
           MA SMKIVFGLL FVT GMI+GA FQLAFI KLEDSYGT FPSF R +K   + YLQLPR
Sbjct: 1   MASSMKIVFGLLAFVTAGMIVGAFFQLAFILKLEDSYGTKFPSFKRVRKLQSDAYLQLPR 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           G++ WDND EA +LR+GYVKPE+ISWSPRI+VLH+FLS EECDYLRA+A+P L++STVVD
Sbjct: 61  GISHWDNDTEAAVLRIGYVKPEIISWSPRIIVLHDFLSSEECDYLRALAKPRLRISTVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQV 150
            KTGKGI+S VRTSSGMFLS EEK Y ++Q 
Sbjct: 121 VKTGKGIESKVRTSSGMFLSSEEKTYQVVQA 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224220|ref|NP_181836.1| P4H isoform 1 [Arabidopsis thaliana] gi|3763917|gb|AAC64297.1| hypothetical protein [Arabidopsis thaliana] gi|20197628|gb|AAM15158.1| hypothetical protein [Arabidopsis thaliana] gi|26450452|dbj|BAC42340.1| unknown protein [Arabidopsis thaliana] gi|29824245|gb|AAP04083.1| unknown protein [Arabidopsis thaliana] gi|330255112|gb|AEC10206.1| P4H isoform 1 [Arabidopsis thaliana]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/150 (71%), Positives = 125/150 (83%), Gaps = 5/150 (3%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSF--MRRQKNGYLQLPRG 60
           MAP+MKIVFGLLTFVT GM+IG+L QLAFI +LEDSYGT FPS   +R Q   YL   R 
Sbjct: 1   MAPAMKIVFGLLTFVTVGMVIGSLLQLAFINRLEDSYGTGFPSLRGLRGQNTRYL---RD 57

Query: 61  VTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDT 120
           V+ W NDK+AELLR+G VKPEV+SWSPRI+VLH+FLS EEC+YL+AIARP LQVSTVVD 
Sbjct: 58  VSRWANDKDAELLRIGNVKPEVVSWSPRIIVLHDFLSPEECEYLKAIARPRLQVSTVVDV 117

Query: 121 KTGKGIKSNVRTSSGMFLSPEEKKYPMIQV 150
           KTGKG+KS+VRTSSGMFL+  E+ YP+IQ 
Sbjct: 118 KTGKGVKSDVRTSSGMFLTHVERSYPIIQA 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468746|ref|XP_004152082.1| PREDICTED: putative prolyl 4-hydroxylase-like [Cucumis sativus]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 121/152 (79%), Gaps = 3/152 (1%)

Query: 2   VMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGY---LQLP 58
           +++  M+IVFGLLTFVT GMIIGAL QLAF+R+LEDS GT+F    R  K  Y    QLP
Sbjct: 1   MVSSQMRIVFGLLTFVTVGMIIGALLQLAFLRRLEDSIGTEFLPAGRLHKAQYDSQHQLP 60

Query: 59  RGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVV 118
           RG   W NDKEAE+LRLGYVKPEV+SWSPRI+VLHNFLS +ECDYL+ IA   L++STVV
Sbjct: 61  RGFPNWINDKEAEILRLGYVKPEVVSWSPRIIVLHNFLSTKECDYLKGIALARLEISTVV 120

Query: 119 DTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQV 150
           DTKTGKG+KS+ RTSSGMFLS  EK +PM+Q 
Sbjct: 121 DTKTGKGVKSDFRTSSGMFLSHHEKNFPMVQA 152

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824279|ref|XP_002880022.1| AT-P4H-1 [Arabidopsis lyrata subsp. lyrata] gi|297325861|gb|EFH56281.1| AT-P4H-1 [Arabidopsis lyrata subsp. lyrata]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/150 (69%), Positives = 122/150 (81%), Gaps = 5/150 (3%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSF--MRRQKNGYLQLPRG 60
           MAP+MKIVFGLLTFVT GM+I +L QLAFI +LEDSYG  FPS   +R Q   YL   R 
Sbjct: 1   MAPAMKIVFGLLTFVTVGMVIASLLQLAFINRLEDSYGPGFPSLRGLRGQNTRYL---RD 57

Query: 61  VTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDT 120
           V+ W NDK+AELLR+G VKPEV+SWSPRI+VLH+FLS EEC+YL+AIARP LQVSTVVD 
Sbjct: 58  VSRWANDKDAELLRIGNVKPEVVSWSPRIIVLHDFLSPEECEYLKAIARPRLQVSTVVDV 117

Query: 121 KTGKGIKSNVRTSSGMFLSPEEKKYPMIQV 150
           KTGKG+KS+VRTSSGMFL+  E+  P+IQ 
Sbjct: 118 KTGKGVKSDVRTSSGMFLTHVERSNPIIQA 147

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445147|ref|XP_003592851.1| Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula] gi|355481899|gb|AES63102.1| Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula]

 Score =  198 bits (503), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 101/148 (68%), Positives = 116/148 (78%), Gaps = 8/148 (5%)

Query: 5   PSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFW 64
           P+MKIVFGLLTFVT GMIIGAL QLAFIR+LE        +  R        LPRG T+W
Sbjct: 4   PAMKIVFGLLTFVTIGMIIGALSQLAFIRRLELEEPFTTTTTTRSL------LPRGYTYW 57

Query: 65  DN--DKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKT 122
           +N  DKEA++LRLGYVKPEV+SWSPRI++LHNFLS EECDYLR +A P L++STVVD  T
Sbjct: 58  NNNNDKEAQILRLGYVKPEVLSWSPRIILLHNFLSYEECDYLRGVALPRLKISTVVDANT 117

Query: 123 GKGIKSNVRTSSGMFLSPEEKKYPMIQV 150
           GKGIKS+VRTSSGMFLS EE+KYPMI  
Sbjct: 118 GKGIKSDVRTSSGMFLSHEERKYPMIHA 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433714|ref|XP_002268409.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296089634|emb|CBI39453.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/151 (61%), Positives = 119/151 (78%), Gaps = 3/151 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSF---MRRQKNGYLQLPR 59
           MA  MK V GLL  V+FGMI GAL QL FI  LE+  G  FPSF    +RQ +G LQL  
Sbjct: 1   MAAPMKFVIGLLALVSFGMIFGALLQLEFIGGLEEVDGKAFPSFRKVHKRQNDGSLQLHG 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           G++ W NDK+A++LR+GYVKPE+++WSPRI++LH+FLS EECDYLRA+A P LQ+STVVD
Sbjct: 61  GISQWVNDKDADILRIGYVKPEILNWSPRIILLHSFLSSEECDYLRAMAEPLLQISTVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQV 150
            +TGKGI+S+VRTSSGMFLSP++  YP+++ 
Sbjct: 121 AQTGKGIQSDVRTSSGMFLSPDDSTYPIVRA 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2041001	283	AT-P4H-1 "P4H isoform 1" [Arab	0.96	0.508	0.718	9.2e-52
TAIR|locus:2012903	287	AT1G20270 [Arabidopsis thalian	0.386	0.202	0.637	1.3e-15
TAIR|locus:2156852	289	AT5G66060 [Arabidopsis thalian	0.393	0.204	0.627	1.3e-15
TAIR|locus:2125329	290	AT4G35810 [Arabidopsis thalian	0.393	0.203	0.610	1.2e-14
TAIR|locus:2827906	291	P4H5 "prolyl 4-hydroxylase 5"	0.386	0.199	0.603	2.6e-13
TAIR|locus:2088892	288	AT3G28490 [Arabidopsis thalian	0.4	0.208	0.475	1.1e-08
TAIR|locus:2081106	299	P4H2 "prolyl 4-hydroxylase 2"	0.453	0.227	0.414	2.7e-07
TAIR|locus:2125344	272	AT4G35820 [Arabidopsis thalian	0.386	0.213	0.439	4.6e-07
TAIR|locus:2144960	298	AT5G18900 [Arabidopsis thalian	0.453	0.228	0.385	2e-06
FB|FBgn0039776	550	PH4alphaEFB "prolyl-4-hydroxyl	0.48	0.130	0.319	0.00029

TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 107/149 (71%), Positives = 125/149 (83%)

Query:     3 MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSF--MRRQKNGYLQLPRG 60
             MAP+MKIVFGLLTFVT GM+IG+L QLAFI +LEDSYGT FPS   +R Q   YL   R 
Sbjct:     1 MAPAMKIVFGLLTFVTVGMVIGSLLQLAFINRLEDSYGTGFPSLRGLRGQNTRYL---RD 57

Query:    61 VTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDT 120
             V+ W NDK+AELLR+G VKPEV+SWSPRI+VLH+FLS EEC+YL+AIARP LQVSTVVD 
Sbjct:    58 VSRWANDKDAELLRIGNVKPEVVSWSPRIIVLHDFLSPEECEYLKAIARPRLQVSTVVDV 117

Query:   121 KTGKGIKSNVRTSSGMFLSPEEKKYPMIQ 149
             KTGKG+KS+VRTSSGMFL+  E+ YP+IQ
Sbjct:   118 KTGKGVKSDVRTSSGMFLTHVERSYPIIQ 146

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS;IDA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 37/58 (63%), Positives = 45/58 (77%)

Query:    81 EVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFL 138
             EV+SW PR  V HNFLS EEC+YL ++A+PH+  STVVD++TGK   S VRTSSG FL
Sbjct:    77 EVLSWEPRAFVYHNFLSKEECEYLISLAKPHMVKSTVVDSETGKSKDSRVRTSSGTFL 134

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 37/59 (62%), Positives = 44/59 (74%)

Query:    81 EVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLS 139
             E+ISW PR  V HNFL+ EEC YL  +A+PH++ STVVD KTGK   S VRTSSG FL+
Sbjct:    79 EIISWEPRASVYHNFLTKEECKYLIELAKPHMEKSTVVDEKTGKSTDSRVRTSSGTFLA 137

GO:0005506 "iron ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query:    81 EVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLS 139
             EVISW PR  V HNFL+ EEC++L ++A+P +  S VVD KTGK I S VRTSSG FL+
Sbjct:    81 EVISWEPRAFVYHNFLTNEECEHLISLAKPSMMKSKVVDVKTGKSIDSRVRTSSGTFLN 139

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 35/58 (60%), Positives = 43/58 (74%)

Query:    81 EVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFL 138
             EVISW PR +V HNFL+ EEC++L ++A+P +  STVVD KTG    S VRTSSG FL
Sbjct:    81 EVISWEPRAVVYHNFLTNEECEHLISLAKPSMVKSTVVDEKTGGSKDSRVRTSSGTFL 138

GO:0005506 "iron ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080147 "root hair cell development" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query:    83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVV-DTKTGKGIKSNVRTSSGMFLSPE 141
             +SW+PR  +   FLS EECD+L  +A+  L+ S VV D  +G+   S VRTSSGMFL+  
Sbjct:    35 LSWTPRAFLYKGFLSDEECDHLIKLAKGKLEKSMVVADVDSGESEDSEVRTSSGMFLTKR 94

Query:   142 E 142
             +
Sbjct:    95 Q 95

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 29/70 (41%), Positives = 43/70 (61%)

Query:    79 KPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFL 138
             K + +S  PR  V   FL+  ECD+L ++A+ +LQ S V D   G+   S+VRTSSG F+
Sbjct:    37 KVKQVSSKPRAFVYEGFLTDLECDHLISLAKENLQRSAVADNDNGESQVSDVRTSSGTFI 96

Query:   139 SPEEKKYPMI 148
             S  + K P++
Sbjct:    97 S--KGKDPIV 104

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS;IDA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IDA

GO:0080147 "root hair cell development" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2125344 AT4G35820 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 29/66 (43%), Positives = 41/66 (62%)

Query:    81 EVISWSPRILVLHNFLSM--------EECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRT 132
             EVI+  PR  V HNFL++        EECD+L ++A+P +  S V +  TG G +S+ RT
Sbjct:    89 EVITKEPRAFVYHNFLALFFKICKTNEECDHLISLAKPSMARSKVRNALTGLGEESSSRT 148

Query:   133 SSGMFL 138
             SSG F+
Sbjct:   149 SSGTFI 154

GO:0005506 "iron ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 27/70 (38%), Positives = 42/70 (60%)

Query:    79 KPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFL 138
             K + +S  PR  V   FL+  ECD++ ++A+  L+ S V D  +G+   S VRTSSG F+
Sbjct:    36 KVKQVSSKPRAFVYEGFLTELECDHMVSLAKASLKRSAVADNDSGESKFSEVRTSSGTFI 95

Query:   139 SPEEKKYPMI 148
             S  + K P++
Sbjct:    96 S--KGKDPIV 103

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

FB|FBgn0039776 PH4alphaEFB "prolyl-4-hydroxylase-alpha EFB" [Drosophila melanogaster (taxid:7227)]

 Score = 99 (39.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query:    73 LRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRT 132
             LRLG +K E +   P I++ H+ +   E D ++ +ARP  + +TV ++ TG    +N R 
Sbjct:   332 LRLGPLKLEEVHADPYIVIYHDAMYDSEIDLIKRMARPRFRRATVQNSVTGALETANYRI 391

Query:   133 SSGMFLSPEEKK 144
             S   +L  +E +
Sbjct:   392 SKSAWLKTQEDR 403

GO:0016222 "procollagen-proline 4-dioxygenase complex" evidence=IC

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISS

GO:0005506 "iron ion binding" evidence=IEA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
PLN00052	310	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio	5e-15
smart00702	165	smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun	2e-06

>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional

 Score = 69.7 bits (170), Expect = 5e-15
 Identities = 31/60 (51%), Positives = 39/60 (65%)

Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SW PRI V   FLS  ECD+L  +A+  +Q S V D K+GK + S VRTSSGMFL   +
Sbjct: 50  VSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQ 109

Length = 310

>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 13/48 (27%), Positives = 16/48 (33%)

Query: 97  SMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKK 144
           S  EC  L   A P      V          S  R S+G +L   E+ 
Sbjct: 1   SPAECQKLLEEAEPLGWRGEVTRGIGNPNETSQYRQSNGTWLELLERD 48

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG1591	289	consensus Prolyl 4-hydroxylase alpha subunit [Amin	99.87
PLN00052	310	prolyl 4-hydroxylase; Provisional	99.7
smart00702	178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	98.74

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]

Probab=99.87  E-value=5.7e-23  Score=173.78  Aligned_cols=97  Identities=44%  Similarity=0.656  Sum_probs=83.7

Q ss_pred             hccccccCCCCCce------------EEcCCCCCceEEecccceEEeccCCcEEEEcccCCHHHHHHHHHHhccCceeeE
Q 031938           49 RQKNGYLQLPRGVT------------FWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVST  116 (150)
Q Consensus        49 ~~~~~y~~lCrG~~------------c~y~~~~~pfL~l~P~K~E~ls~~P~IvlyhnflS~~E~~~Li~lakp~L~rS~  116 (150)
                      .....|+..|||+.            |++. .+ ||++++|+|+|+|||+|++++||||||++||++|+++|+|+|++++
T Consensus        49 ~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~-~~-~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~st  126 (289)
T KOG1591|consen   49 QEFTVYEQGCRGELPPLTKLTLRRLSCRNR-AG-PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERST  126 (289)
T ss_pred             ccccchhhhccCccCccchhHhhhhhcccc-cC-cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhcee
Confidence            56778999999952            4332 22 9999999999999999999999999999999999999999999999


Q ss_pred             ee-ecCCCCceecceeeeeccccCCCCCCCCccc
Q 031938          117 VV-DTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQ  149 (150)
Q Consensus       117 V~-d~~tG~~~~s~~RtS~~awL~~~e~~~pvV~  149 (150)
                      |+ +..+|....+.+|+|+++|+..++  +++++
T Consensus       127 v~~~~~~~~~~~~~~R~S~~t~l~~~~--~~~~~  158 (289)
T KOG1591|consen  127 VVADKGTGHSTTSAVRTSSGTFLPDGA--SPVVS  158 (289)
T ss_pred             eeccCCcccccceeeEecceeEecCCC--CHHHH
Confidence            95 666688778889999999999854  77764

>PLN00052 prolyl 4-hydroxylase; Provisional

Probab=99.70  E-value=1.8e-17  Score=141.54  Aligned_cols=74  Identities=43%  Similarity=0.731  Sum_probs=68.0

Q ss_pred             EecccceEEeccCCcEEEEcccCCHHHHHHHHHHhccCceeeEeeecCCCCceecceeeeeccccCCCCCCCCccc
Q 031938           74 RLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQ  149 (150)
Q Consensus        74 ~l~P~K~E~ls~~P~IvlyhnflS~~E~~~Li~lakp~L~rS~V~d~~tG~~~~s~~RtS~~awL~~~e~~~pvV~  149 (150)
                      .+.|.|+|+|||+|+|++||||||++||++||++|+++|++|+|++..+|+...+++|||+++||.+.+  +|+++
T Consensus        41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~--dpvv~  114 (310)
T PLN00052         41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQ--DPVVS  114 (310)
T ss_pred             CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCC--CHHHH
Confidence            348999999999999999999999999999999999999999999887888788899999999998776  78764

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues

Probab=98.74  E-value=1.1e-08  Score=79.05  Aligned_cols=61  Identities=31%  Similarity=0.390  Sum_probs=50.5

Q ss_pred             CcEEEEcccCCHHHHHHHHHHhccCceeeEeeecCCCCceecceeeeeccccCCCCCCCCcc
Q 031938           87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMI  148 (150)
Q Consensus        87 P~IvlyhnflS~~E~~~Li~lakp~L~rS~V~d~~tG~~~~s~~RtS~~awL~~~e~~~pvV  148 (150)
                      |.|++||||||++||+.|++++++.+.++.+.+...+....+++|+|+.+|+..++ .+|++
T Consensus         1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~-~~~~~   61 (178)
T smart00702        1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLK-GDLVI   61 (178)
T ss_pred             CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCC-CCHHH
Confidence            88999999999999999999999999999998665443356789999999998763 24543

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
3gze_A	225	Algal Prolyl 4-Hydroxylase Complexed With Zinc And		2e-12
2jig_A	224	Crystal Structure Of Chlamydomonas Reinhardtii Prol		2e-12
2jij_A	233	Crystal Structure Of The Apo Form Of Chlamydomonas		2e-12
2v4a_A	233	Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd		3e-12

>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SWSPR  +L NFLS EECDY+   ARP +  S+VVD ++GK + S +RTS+G + +  E
Sbjct: 17  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 76

>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SWSPR  +L NFLS EECDY+   ARP +  S+VVD ++GK + S +RTS+G + +  E
Sbjct: 16  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 75

>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SWSPR  +L NFLS EECDY+   ARP +  S+VVD ++GK + S +RTS+G + +  E
Sbjct: 25  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 84

>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SWSPR  +L NFLS EECDY+   ARP    S+VVD ++GK + S +RTS+G + +  E
Sbjct: 25  LSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
2jig_A	224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	8e-25
3itq_A	216	Prolyl 4-hydroxylase, alpha subunit domain protei;	1e-21

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224

 Score = 93.8 bits (233), Expect = 8e-25
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 78  VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMF 137
            +   +SWSPR  +L NFLS EECDY+   ARP +  S+VVD ++GK + S +RTS+G +
Sbjct: 11  GEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTW 70

Query: 138 LSPEE 142
            +  E
Sbjct: 71  FAKGE 75

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216

 Score = 85.6 bits (212), Expect = 1e-21
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 54  YLQLPRGVTFWDNDKEAELLRLGYVKPEVI--SWSPRILVLHNFLSMEECDYLRAIARPH 111
             Q+         D +  +++    + ++I     P I+VL N LS EECD L  +++  
Sbjct: 4   NNQIGENKEQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSK 63

Query: 112 LQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           L  S V  ++      +++RTSSG FL   E
Sbjct: 64  LARSKVGSSRD----VNDIRTSSGAFLDDNE 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
2jig_A	224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	99.61
3itq_A	216	Prolyl 4-hydroxylase, alpha subunit domain protei;	99.35
2hbt_A	247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	96.23
3dkq_A	243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	95.89

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A

Probab=99.61  E-value=4.7e-16  Score=123.53  Aligned_cols=74  Identities=42%  Similarity=0.673  Sum_probs=66.2

Q ss_pred             EEecccceEEeccCCcEEEEcccCCHHHHHHHHHHhccCceeeEeeecCCCCceecceeeeeccccCCCCCCCCcc
Q 031938           73 LRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMI  148 (150)
Q Consensus        73 L~l~P~K~E~ls~~P~IvlyhnflS~~E~~~Li~lakp~L~rS~V~d~~tG~~~~s~~RtS~~awL~~~e~~~pvV  148 (150)
                      ..++|.|+|+||++|+|++||||||++||++|+++++++|++|++.+..+|+...+++|+|+++||.+.+  +|++
T Consensus         6 ~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~--~~~~   79 (224)
T 2jig_A            6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE--DSVI   79 (224)
T ss_dssp             -CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTC--SHHH
T ss_pred             ccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCC--CHHH
Confidence            3568999999999999999999999999999999999999999999887777777889999999998765  5554

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}

Probab=99.35  E-value=2.3e-13  Score=109.47  Aligned_cols=58  Identities=38%  Similarity=0.452  Sum_probs=48.0

Q ss_pred             cceEEeccCCcEEEEcccCCHHHHHHHHHHhccCceeeEe-eecCCCCceecceeeeeccccCC
Q 031938           78 VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTV-VDTKTGKGIKSNVRTSSGMFLSP  140 (150)
Q Consensus        78 ~K~E~ls~~P~IvlyhnflS~~E~~~Li~lakp~L~rS~V-~d~~tG~~~~s~~RtS~~awL~~  140 (150)
                      ++++++|++|+|++||||||++||++|+++|+++|++|+| .+     ...+++|+|+++||.+
T Consensus        30 v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~-----~~~~~~RtS~~~wl~~   88 (216)
T 3itq_A           30 IQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS-----RDVNDIRTSSGAFLDD   88 (216)
T ss_dssp             EEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC-------------CCCCGGGTTCEECCC
T ss_pred             EEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC-----CccCCcEeeeeEEeCC
Confidence            6899999999999999999999999999999999999999 33     2457899999999976

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*

Probab=96.23  E-value=0.0052  Score=49.55  Aligned_cols=54  Identities=17%  Similarity=0.251  Sum_probs=41.6

Q ss_pred             CcEEEEcccCCHHHHHHHHHHhcc-----CceeeEeeecCCCCceecceeeeeccccCCCC
Q 031938           87 PRILVLHNFLSMEECDYLRAIARP-----HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE  142 (150)
Q Consensus        87 P~IvlyhnflS~~E~~~Li~lakp-----~L~rS~V~d~~tG~~~~s~~RtS~~awL~~~e  142 (150)
                      +-+++++|||+++||+.|++.++.     .++++.+.+.  +.....++|+++..|+...+
T Consensus        26 ~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~--~~~~~~~iR~d~i~wl~~~~   84 (247)
T 2hbt_A           26 HGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQ--KSDSSKDIRGDKITWIEGKE   84 (247)
T ss_dssp             TSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEEC--CSSSTTCEECCEEEEECSCS
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccc--cccccccccccceeeecccc
Confidence            345779999999999999999874     4777777652  12344679999999998764

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}

Probab=95.89  E-value=0.0064  Score=49.32  Aligned_cols=55  Identities=13%  Similarity=0.144  Sum_probs=36.3

Q ss_pred             EEeccCCcEEEEcccCCHHHHHHHHHHhcc-CceeeEeeecCCCCceecceeeeeccccCCC
Q 031938           81 EVISWSPRILVLHNFLSMEECDYLRAIARP-HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPE  141 (150)
Q Consensus        81 E~ls~~P~IvlyhnflS~~E~~~Li~lakp-~L~rS~V~d~~tG~~~~s~~RtS~~awL~~~  141 (150)
                      |-+-.++.++++|||||++||++|+++++. ...++.+.    +...  ..++.++.|+..+
T Consensus        13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~t----~g~~--~~~vr~n~~l~~d   68 (243)
T 3dkq_A           13 ENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQT----SGAM--ATTRKRNQQLDKD   68 (243)
T ss_dssp             -CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECCC----SSBS--SCCCEEEEECCTT
T ss_pred             cccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCccc----CCCc--cccceeeeEECCC
Confidence            344568899999999999999999999953 44444332    1111  2345556777643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00