Citrus Sinensis ID: 031977

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAPASSS
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccEEEEEEccccEEEEEEcccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEccEEcccccEEEEEcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
masskgggmekMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAStalhdlslrpqgakmLVPLTaslyvpgtldDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKqlapasss
Flexible Loop (DISEMBL)
masskgggmekMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKlkqlapasss
Low Complexity Region (SEG)
MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAPASSS
Disordered region (IsUnstruct)
***********************************************************QGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA***********
Disordered Region (DISOPRED)
******************AIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLL**************************************
Disordered Region (DISEMBL)
************SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK********
Disordered Region (DISPRO)
*******GMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAPASSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
P57742	151	Probable prefoldin subuni	yes	no	0.993	0.986	0.771	2e-62
Q5RAY0	154	Prefoldin subunit 5 OS=Po	yes	no	0.893	0.870	0.343	8e-20
Q99471	154	Prefoldin subunit 5 OS=Ho	yes	no	0.893	0.870	0.343	9e-20
Q9WU28	154	Prefoldin subunit 5 OS=Mu	yes	no	0.893	0.870	0.343	1e-19
Q8HYI9	154	Prefoldin subunit 5 OS=Bo	yes	no	0.893	0.870	0.343	1e-19
Q54V55	160	Probable prefoldin subuni	yes	no	0.76	0.712	0.348	3e-18
Q9VCZ8	168	Probable prefoldin subuni	yes	no	0.9	0.803	0.313	1e-17
Q04493	163	Prefoldin subunit 5 OS=Sa	yes	no	0.906	0.834	0.326	4e-14
Q21993	152	Probable prefoldin subuni	yes	no	0.693	0.684	0.365	1e-13
O94307	154	Probable prefoldin subuni	yes	no	0.713	0.694	0.396	2e-13

>sp|P57742|PFD5_ARATH Probable prefoldin subunit 5 OS=Arabidopsis thaliana GN=At5g23290 PE=1 SV=1

 Score =  237 bits (605), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 135/149 (90%)

Query: 2   ASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQG 61
           +SS  G MEKM ++QLKA+KEQ DLEVNLLQDSLNNIRTAT RL++A+ AL+DLSLRPQG
Sbjct: 3   SSSSRGEMEKMGIDQLKALKEQADLEVNLLQDSLNNIRTATVRLDAAAAALNDLSLRPQG 62

Query: 62  AKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
            KMLVPLTASLYVPGTLD+A KVLVDIGTGYF+EKTMD+GKDYC+RKINLLKSNFDQL E
Sbjct: 63  KKMLVPLTASLYVPGTLDEADKVLVDIGTGYFIEKTMDDGKDYCQRKINLLKSNFDQLFE 122

Query: 122 VATKKKTISDEAAVILQAKLKQLAPASSS 150
           VA KKK+++DEA ++LQAK+KQL  A++S
Sbjct: 123 VAAKKKSVADEAGMVLQAKVKQLTAATTS 151

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5RAY0|PFD5_PONAB Prefoldin subunit 5 OS=Pongo abelii GN=PFDN5 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 81/134 (60%)

Query: 11  KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
           ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct: 9   ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query: 71  SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
           S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  + 
Sbjct: 69  SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128

Query: 131 DEAAVILQAKLKQL 144
                ++  K++QL
Sbjct: 129 QAVMEMMSQKIRQL 142

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Pongo abelii (taxid: 9601)

>sp|Q99471|PFD5_HUMAN Prefoldin subunit 5 OS=Homo sapiens GN=PFDN5 PE=1 SV=2

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 81/134 (60%)

Query: 11  KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
           ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct: 9   ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query: 71  SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
           S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  + 
Sbjct: 69  SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128

Query: 131 DEAAVILQAKLKQL 144
                ++  K++QL
Sbjct: 129 QAVMEMMSQKIQQL 142

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Homo sapiens (taxid: 9606)

>sp|Q9WU28|PFD5_MOUSE Prefoldin subunit 5 OS=Mus musculus GN=Pfdn5 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 81/134 (60%)

Query: 11  KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
           ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct: 9   ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query: 71  SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
           S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  + 
Sbjct: 69  SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128

Query: 131 DEAAVILQAKLKQL 144
                ++  K++QL
Sbjct: 129 QAVMEMMSQKIQQL 142

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Mus musculus (taxid: 10090)

>sp|Q8HYI9|PFD5_BOVIN Prefoldin subunit 5 OS=Bos taurus GN=PFDN5 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 80/134 (59%)

Query: 11  KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
           ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L    +G ++LVPLT+
Sbjct: 9   ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLKKNNEGKELLVPLTS 68

Query: 71  SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
           S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  + 
Sbjct: 69  SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128

Query: 131 DEAAVILQAKLKQL 144
                ++  K++QL
Sbjct: 129 QAVMEMMSQKIQQL 142

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Bos taurus (taxid: 9913)

>sp|Q54V55|PFD5_DICDI Probable prefoldin subunit 5 OS=Dictyostelium discoideum GN=pfdn5 PE=3 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 78/129 (60%), Gaps = 15/129 (11%)

Query: 12  MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTAS 71
           +S+EQL+ ++EQ + E+  L +S+  ++ A+++   A  A+  L     G  MLVPLT+S
Sbjct: 14  LSLEQLQMVREQVEAEIQQLSESIQQLKHASNKYIEAKEAMGGLK-GTDGKDMLVPLTSS 72

Query: 72  LYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERK--------------INLLKSNFD 117
           +Y+PG ++   KVLVDIGTGY+VE  +++G+++  RK              IN+ + N +
Sbjct: 73  IYLPGKINSNEKVLVDIGTGYYVEMGIEQGQNFSNRKVQLITEQVNKVQTAINMKRQNLE 132

Query: 118 QLIEVATKK 126
            +++VA  K
Sbjct: 133 SIVQVAQSK 141

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VCZ8|PFD5_DROME Probable prefoldin subunit 5 OS=Drosophila melanogaster GN=CG7048 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 82/137 (59%), Gaps = 2/137 (1%)

Query: 11  KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
           K+S EQL  IK++ + E+  +QDSL+ +    ++   +  AL       +  ++LVPLT+
Sbjct: 18  KLSPEQLIQIKQEFEQEITNVQDSLSTLHGCQAKYAGSKEALGTFQPNWENRQILVPLTS 77

Query: 71  SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
           S+YVPG + D  + ++DIGTGY++EK ++  KDY +R++  ++   +++ ++  +K    
Sbjct: 78  SMYVPGRVKDLNRFVIDIGTGYYIEKDLEGSKDYFKRRVEYVQEQIEKIEKIHLQKTRFY 137

Query: 131 DEAAVILQAKLKQLAPA 147
           +    +L+  +KQ A A
Sbjct: 138 NSVMSVLE--MKQAAAA 152

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q04493|PFD5_YEAST Prefoldin subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIM5 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 86/147 (58%), Gaps = 11/147 (7%)

Query: 3   SSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQ-- 60
           SS+   + K++ EQL A+K+Q D E+     SL  +  A  +    +  + D+    Q  
Sbjct: 2   SSQKIDLTKLNPEQLNAVKQQFDQELQHFTQSLQALTMAKGKF---TECIDDIKTVSQAG 58

Query: 61  --GAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQ 118
             G K+LVP +ASLY+PG + D +K +VDIGTGY+VEK+ +    + ++K++ L     Q
Sbjct: 59  NEGQKLLVPASASLYIPGKIVDNKKFMVDIGTGYYVEKSAEAAIAFYQKKVDKLNKESVQ 118

Query: 119 LIEVATKKKTISDEAAVILQAKLKQLA 145
           + ++  K+KT   + ++ ++A+++Q A
Sbjct: 119 IQDI-IKEKT---QYSLSIEAQIRQAA 141

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q21993|PFD5_CAEEL Probable prefoldin subunit 5 OS=Caenorhabditis elegans GN=pfd-5 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 63/104 (60%)

Query: 5   KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKM 64
           KG  + ++S++QL  +++  + E+N  Q+S N ++   +R E + +AL D+ +   G   
Sbjct: 6   KGVPLSELSLQQLGELQKNCEQELNFFQESFNALKGLLTRNEKSISALDDVKIATAGHTA 65

Query: 65  LVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERK 108
           L+PL+ SLY+   L D  K LV+IGTGYFVE   ++ K   +RK
Sbjct: 66  LIPLSESLYIRAELSDPSKHLVEIGTGYFVELDREKAKAIFDRK 109

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|O94307|PFD5_SCHPO Probable prefoldin subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bob1 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 4/111 (3%)

Query: 12  MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQ--GAKMLVPLT 69
           +S+EQL  + +Q D E+  L  S   +  A  +       ++D ++R +  G ++LVPLT
Sbjct: 13  LSLEQLSEVIKQLDSELEYLSTSYGQLGRAQLKFRECLANVND-AVRAENDGKEVLVPLT 71

Query: 70  ASLYVPGTLD-DARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQL 119
           +SLYVPG L+    K+LVDIGTGY+VEK+  E  +Y +RK   L S+ + L
Sbjct: 72  SSLYVPGKLNLGNSKLLVDIGTGYYVEKSAGEATEYYKRKCEYLASSIENL 122

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (By similarity). Required for normal cytoskeletal function and when bound to byr1, is involved in the regulation of sexual differentiation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
224083880	158	predicted protein [Populus trichocarpa]	0.986	0.936	0.816	9e-68
224096514	158	predicted protein [Populus trichocarpa]	0.98	0.930	0.809	3e-65
118482380	158	unknown [Populus trichocarpa]	0.98	0.930	0.809	6e-65
225462560	151	PREDICTED: probable prefoldin subunit 5	0.986	0.980	0.814	2e-63
296085268	137	unnamed protein product [Vitis vinifera]	0.913	1.0	0.846	1e-61
449464306	160	PREDICTED: probable prefoldin subunit 5-	0.966	0.906	0.738	4e-61
15237277	151	prefoldin alpha subunit [Arabidopsis tha	0.993	0.986	0.771	1e-60
357444911	152	Prefoldin subunit [Medicago truncatula]	0.986	0.973	0.776	2e-60
297808331	151	hypothetical protein ARALYDRAFT_910341 [	0.993	0.986	0.765	4e-60
16905198	150	putative c-myc binding protein [Oryza sa	1.0	1.0	0.753	6e-60

>gi|224083880|ref|XP_002307156.1| predicted protein [Populus trichocarpa] gi|222856605|gb|EEE94152.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 129/158 (81%), Positives = 139/158 (87%), Gaps = 10/158 (6%)

Query: 1   MASSKGGG----------MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST 50
           MASSKGG           MEKMSVEQLKA+KEQTDLEVNLLQDSLNNI+TAT RLE  +T
Sbjct: 1   MASSKGGATSPAVLRASEMEKMSVEQLKALKEQTDLEVNLLQDSLNNIKTATGRLEITAT 60

Query: 51  ALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKIN 110
           +LHDLSLRPQG KMLVPLTASLYVPGTLDDA KVLVDIGTGYFVEKTM+EGKDYCERKIN
Sbjct: 61  SLHDLSLRPQGKKMLVPLTASLYVPGTLDDADKVLVDIGTGYFVEKTMNEGKDYCERKIN 120

Query: 111 LLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAPAS 148
           LLKSNFDQLIE+ATKKKT++DEA  ILQAKL+QLAP +
Sbjct: 121 LLKSNFDQLIELATKKKTVADEAGAILQAKLRQLAPTT 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096514|ref|XP_002310641.1| predicted protein [Populus trichocarpa] gi|222853544|gb|EEE91091.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/147 (80%), Positives = 136/147 (92%)

Query: 2   ASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQG 61
           A+++   MEKMS+EQLKA+KEQTDLE NLLQDSLNNI+TAT RLE A+T+L+DL+LRPQG
Sbjct: 12  AAARASDMEKMSIEQLKAVKEQTDLEFNLLQDSLNNIKTATGRLEVAATSLNDLALRPQG 71

Query: 62  AKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
            KMLVPLTASLYVPGTLDDA +VLVDIGTGYFVEKTM+EGKDYCERKINLLKSNFDQLIE
Sbjct: 72  KKMLVPLTASLYVPGTLDDADRVLVDIGTGYFVEKTMNEGKDYCERKINLLKSNFDQLIE 131

Query: 122 VATKKKTISDEAAVILQAKLKQLAPAS 148
           +ATKKKT++DEA  ILQAKL+QLAP +
Sbjct: 132 LATKKKTVADEAGAILQAKLRQLAPTT 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482380|gb|ABK93113.1| unknown [Populus trichocarpa]

 Score =  251 bits (642), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 119/147 (80%), Positives = 135/147 (91%)

Query: 2   ASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQG 61
           A+++   MEKMS+EQLKA+KEQTDLE NLLQDSLNNI TAT RLE A+T+L+DL+LRPQG
Sbjct: 12  AAARASDMEKMSIEQLKAVKEQTDLEFNLLQDSLNNIETATGRLEVAATSLNDLALRPQG 71

Query: 62  AKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
            KMLVPLTASLYVPGTLDDA +VLVDIGTGYFVEKTM+EGKDYCERKINLLKSNFDQLIE
Sbjct: 72  KKMLVPLTASLYVPGTLDDADRVLVDIGTGYFVEKTMNEGKDYCERKINLLKSNFDQLIE 131

Query: 122 VATKKKTISDEAAVILQAKLKQLAPAS 148
           +ATKKKT++DEA  ILQAKL+QLAP +
Sbjct: 132 LATKKKTVADEAGAILQAKLRQLAPTT 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462560|ref|XP_002267649.1| PREDICTED: probable prefoldin subunit 5 [Vitis vinifera] gi|147795534|emb|CAN63324.1| hypothetical protein VITISV_018866 [Vitis vinifera]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/151 (81%), Positives = 134/151 (88%), Gaps = 3/151 (1%)

Query: 1   MASSKG---GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57
           MAS  G     MEKMS+E LKA+KEQTDLEVNLLQDSLNNIRTATSRLE AS AL+DLSL
Sbjct: 1   MASKAGIRVPEMEKMSIEHLKALKEQTDLEVNLLQDSLNNIRTATSRLEIASAALNDLSL 60

Query: 58  RPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFD 117
           RPQG KMLVPLTASLYVPG LDDA KVLVD+GTGYF+EKTM EGKDYCERKINLL+SN+D
Sbjct: 61  RPQGKKMLVPLTASLYVPGKLDDADKVLVDVGTGYFIEKTMAEGKDYCERKINLLRSNYD 120

Query: 118 QLIEVATKKKTISDEAAVILQAKLKQLAPAS 148
           QL+EVATKKK+I+DEA VILQAKLKQL  A+
Sbjct: 121 QLVEVATKKKSIADEAGVILQAKLKQLGAAT 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085268|emb|CBI29000.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/137 (84%), Positives = 127/137 (92%)

Query: 12  MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTAS 71
           MS+E LKA+KEQTDLEVNLLQDSLNNIRTATSRLE AS AL+DLSLRPQG KMLVPLTAS
Sbjct: 1   MSIEHLKALKEQTDLEVNLLQDSLNNIRTATSRLEIASAALNDLSLRPQGKKMLVPLTAS 60

Query: 72  LYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISD 131
           LYVPG LDDA KVLVD+GTGYF+EKTM EGKDYCERKINLL+SN+DQL+EVATKKK+I+D
Sbjct: 61  LYVPGKLDDADKVLVDVGTGYFIEKTMAEGKDYCERKINLLRSNYDQLVEVATKKKSIAD 120

Query: 132 EAAVILQAKLKQLAPAS 148
           EA VILQAKLKQL  A+
Sbjct: 121 EAGVILQAKLKQLGAAT 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464306|ref|XP_004149870.1| PREDICTED: probable prefoldin subunit 5-like [Cucumis sativus] gi|449484948|ref|XP_004157026.1| PREDICTED: probable prefoldin subunit 5-like [Cucumis sativus]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 116/157 (73%), Positives = 132/157 (84%), Gaps = 12/157 (7%)

Query: 1   MASSKGGG------------MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA 48
           MAS KGG             +EKMSVEQL+A KEQTD+EVNLL DSLNNIRTATSRL+ A
Sbjct: 1   MASRKGGSSGGEGVRSLELELEKMSVEQLRAFKEQTDMEVNLLHDSLNNIRTATSRLDIA 60

Query: 49  STALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERK 108
           S ALHDLSLRPQG +MLVPLTASLYVPGTLD+A KVLVD+GTGYF+EKTM +GKDYCERK
Sbjct: 61  SAALHDLSLRPQGKRMLVPLTASLYVPGTLDEADKVLVDVGTGYFIEKTMADGKDYCERK 120

Query: 109 INLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA 145
           I LL+SNFDQLIE+ATKKK ++DEA +ILQAKL+Q+ 
Sbjct: 121 IKLLRSNFDQLIEIATKKKKVADEAGLILQAKLRQMG 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237277|ref|NP_197720.1| prefoldin alpha subunit [Arabidopsis thaliana] gi|12230432|sp|P57742.1|PFD5_ARATH RecName: Full=Probable prefoldin subunit 5 gi|10177818|dbj|BAB11184.1| c-myc binding protein MM-1-like protein [Arabidopsis thaliana] gi|17381002|gb|AAL36313.1| putative c-myc binding protein MM-1 [Arabidopsis thaliana] gi|20465871|gb|AAM20040.1| putative c-myc binding protein MM-1 [Arabidopsis thaliana] gi|332005765|gb|AED93148.1| prefoldin alpha subunit [Arabidopsis thaliana]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 135/149 (90%)

Query: 2   ASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQG 61
           +SS  G MEKM ++QLKA+KEQ DLEVNLLQDSLNNIRTAT RL++A+ AL+DLSLRPQG
Sbjct: 3   SSSSRGEMEKMGIDQLKALKEQADLEVNLLQDSLNNIRTATVRLDAAAAALNDLSLRPQG 62

Query: 62  AKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
            KMLVPLTASLYVPGTLD+A KVLVDIGTGYF+EKTMD+GKDYC+RKINLLKSNFDQL E
Sbjct: 63  KKMLVPLTASLYVPGTLDEADKVLVDIGTGYFIEKTMDDGKDYCQRKINLLKSNFDQLFE 122

Query: 122 VATKKKTISDEAAVILQAKLKQLAPASSS 150
           VA KKK+++DEA ++LQAK+KQL  A++S
Sbjct: 123 VAAKKKSVADEAGMVLQAKVKQLTAATTS 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444911|ref|XP_003592733.1| Prefoldin subunit [Medicago truncatula] gi|355481781|gb|AES62984.1| Prefoldin subunit [Medicago truncatula]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/152 (77%), Positives = 132/152 (86%), Gaps = 4/152 (2%)

Query: 1   MASSKGGG----MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56
           MASSK G     +E+MSVEQLKA+KEQ D+EVNLLQDSLNNI TAT+RLE A+TAL+DLS
Sbjct: 1   MASSKSGSGAMTLERMSVEQLKAVKEQADMEVNLLQDSLNNIGTATTRLELATTALNDLS 60

Query: 57  LRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNF 116
           LR  G+K+LVPLTASLYVP TL D   VLVDIGTGYFVEKTM EGKDYCERKINLLKSNF
Sbjct: 61  LRSLGSKILVPLTASLYVPATLQDPHHVLVDIGTGYFVEKTMPEGKDYCERKINLLKSNF 120

Query: 117 DQLIEVATKKKTISDEAAVILQAKLKQLAPAS 148
           DQL+EVA+KKK ++DEA VILQAKLKQLA +S
Sbjct: 121 DQLVEVASKKKNVADEAGVILQAKLKQLASSS 152

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808331|ref|XP_002872049.1| hypothetical protein ARALYDRAFT_910341 [Arabidopsis lyrata subsp. lyrata] gi|297317886|gb|EFH48308.1| hypothetical protein ARALYDRAFT_910341 [Arabidopsis lyrata subsp. lyrata]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 135/149 (90%)

Query: 2   ASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQG 61
           +SS  G MEKM ++QLKA+KEQ DLEVNLLQDSLNNIRTAT RL++A+ AL+DLSLRPQG
Sbjct: 3   SSSSRGEMEKMGIDQLKALKEQADLEVNLLQDSLNNIRTATVRLDAAAAALNDLSLRPQG 62

Query: 62  AKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
            KMLVPLTASLYVPGTLD+A KVLVDIGTGYF+EKTMD+GKDYC+RKI+LLKSNFDQL E
Sbjct: 63  KKMLVPLTASLYVPGTLDEADKVLVDIGTGYFIEKTMDDGKDYCQRKIHLLKSNFDQLFE 122

Query: 122 VATKKKTISDEAAVILQAKLKQLAPASSS 150
           VA KKK+++DEA ++LQAK+KQL  A++S
Sbjct: 123 VAAKKKSVADEAGMVLQAKVKQLTAATTS 151

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16905198|gb|AAL31068.1|AC090120_14 putative c-myc binding protein [Oryza sativa Japonica Group] gi|31432776|gb|AAP54369.1| prefoldin subunit 5, putative, expressed [Oryza sativa Japonica Group] gi|215693783|dbj|BAG88982.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  235 bits (599), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 113/150 (75%), Positives = 132/150 (88%)

Query: 1   MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQ 60
           MAS     +EK+SVEQLKA+KEQTDLEVNLLQDSL  IR+A +RLE+AS ALHDLSLRP+
Sbjct: 1   MASPPRIEVEKLSVEQLKALKEQTDLEVNLLQDSLTKIRSAATRLENASAALHDLSLRPK 60

Query: 61  GAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLI 120
           G KMLVPLTASLYVPGTLDD+ KVLVD+GTGYF+EKTM EGK+YCERKINLLKSNFD+L+
Sbjct: 61  GKKMLVPLTASLYVPGTLDDSEKVLVDVGTGYFIEKTMTEGKEYCERKINLLKSNFDELV 120

Query: 121 EVATKKKTISDEAAVILQAKLKQLAPASSS 150
           E+ATKKK I+DE   +LQAKL+Q +P+ SS
Sbjct: 121 EMATKKKNIADEMGRLLQAKLRQSSPSPSS 150

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2166811	151	PFD5 "prefoldin 5" [Arabidopsi	1.0	0.993	0.774	1.1e-57
ZFIN|ZDB-GENE-030131-6858	153	pfdn5 "prefoldin 5" [Danio rer	0.94	0.921	0.370	9e-22
UNIPROTKB|E2RC92	154	PFDN5 "Uncharacterized protein	0.893	0.870	0.350	1.5e-21
RGD|1311436	154	Pfdn5 "prefoldin subunit 5" [R	0.886	0.863	0.370	4.9e-21
UNIPROTKB|Q8HYI9	154	PFDN5 "Prefoldin subunit 5" [B	0.893	0.870	0.343	1e-20
UNIPROTKB|Q99471	154	PFDN5 "Prefoldin subunit 5" [H	0.893	0.870	0.343	1e-20
UNIPROTKB|F1SFR2	160	PFDN5 "Uncharacterized protein	0.893	0.837	0.343	1e-20
MGI|MGI:1928753	154	Pfdn5 "prefoldin 5" [Mus muscu	0.893	0.870	0.343	1e-20
DICTYBASE|DDB_G0280607	160	pfdn5 "prefoldin subunit 5" [D	0.853	0.8	0.351	1.1e-18
FB|FBgn0038976	168	CG7048 [Drosophila melanogaste	0.96	0.857	0.308	2.8e-18

TAIR|locus:2166811 PFD5 "prefoldin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 117/151 (77%), Positives = 136/151 (90%)

Query:     1 MASSKGGG-MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRP 59
             MASS   G MEKM ++QLKA+KEQ DLEVNLLQDSLNNIRTAT RL++A+ AL+DLSLRP
Sbjct:     1 MASSSSRGEMEKMGIDQLKALKEQADLEVNLLQDSLNNIRTATVRLDAAAAALNDLSLRP 60

Query:    60 QGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQL 119
             QG KMLVPLTASLYVPGTLD+A KVLVDIGTGYF+EKTMD+GKDYC+RKINLLKSNFDQL
Sbjct:    61 QGKKMLVPLTASLYVPGTLDEADKVLVDIGTGYFIEKTMDDGKDYCQRKINLLKSNFDQL 120

Query:   120 IEVATKKKTISDEAAVILQAKLKQLAPASSS 150
              EVA KKK+++DEA ++LQAK+KQL  A++S
Sbjct:   121 FEVAAKKKSVADEAGMVLQAKVKQLTAATTS 151

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0016272 "prefoldin complex" evidence=IEA;ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-030131-6858 pfdn5 "prefoldin 5" [Danio rerio (taxid:7955)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 53/143 (37%), Positives = 89/143 (62%)

Query:     9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPL 68
             + ++S+ QL+ +K Q D E   L  S+  ++   ++   A  +L+ L+   +G ++LVPL
Sbjct:     5 LTELSLPQLEGLKTQLDQETEFLSSSIAQLKVVQTKYVEAKDSLNVLNKSNEGKELLVPL 64

Query:    69 TASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKT 128
             T+S+YVPG L D   VLVD+GTGYFVEK +++GK++ +RKI  L    ++ I+ A ++K 
Sbjct:    65 TSSMYVPGKLHDVDHVLVDVGTGYFVEKNVEDGKEFFKRKIGFLTKQIEK-IQPALQEKY 123

Query:   129 ISDEAAV-ILQAKLKQLAPASSS 150
                +A V ++  KL+QL    +S
Sbjct:   124 AMKQAVVEVMNMKLQQLHSQQAS 146

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|E2RC92 PFDN5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 47/134 (35%), Positives = 81/134 (60%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   LH L+   +G ++LVPLT+
Sbjct:     9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLHVLNKNNEGKELLVPLTS 68

Query:    71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
             S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  + 
Sbjct:    69 SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128

Query:   131 DEAAVILQAKLKQL 144
                  ++  K++QL
Sbjct:   129 QAVMEMMSQKIQQL 142

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

RGD|1311436 Pfdn5 "prefoldin subunit 5" [Rattus norvegicus (taxid:10116)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 50/135 (37%), Positives = 86/135 (63%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct:     9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query:    71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
             S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    ++ I+ A ++K   
Sbjct:    69 SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEK-IQPALQEKHAM 127

Query:   131 DEAAV-ILQAKLKQL 144
              +A V ++  K++QL
Sbjct:   128 KQAVVEMMSQKIQQL 142

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA;ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA;ISO

UNIPROTKB|Q8HYI9 PFDN5 "Prefoldin subunit 5" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 46/134 (34%), Positives = 80/134 (59%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L    +G ++LVPLT+
Sbjct:     9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLKKNNEGKELLVPLTS 68

Query:    71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
             S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  + 
Sbjct:    69 SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128

Query:   131 DEAAVILQAKLKQL 144
                  ++  K++QL
Sbjct:   129 QAVMEMMSQKIQQL 142

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005634 "nucleus" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|Q99471 PFDN5 "Prefoldin subunit 5" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 46/134 (34%), Positives = 81/134 (60%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct:     9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query:    71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
             S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  + 
Sbjct:    69 SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128

Query:   131 DEAAVILQAKLKQL 144
                  ++  K++QL
Sbjct:   129 QAVMEMMSQKIQQL 142

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IMP

UNIPROTKB|F1SFR2 PFDN5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 46/134 (34%), Positives = 81/134 (60%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct:    15 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 74

Query:    71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
             S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  + 
Sbjct:    75 SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 134

Query:   131 DEAAVILQAKLKQL 144
                  ++  K++QL
Sbjct:   135 QAVMEMMSQKIQQL 148

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

MGI|MGI:1928753 Pfdn5 "prefoldin 5" [Mus musculus (taxid:10090)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 46/134 (34%), Positives = 81/134 (60%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct:     9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query:    71 SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
             S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  + 
Sbjct:    69 SMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMK 128

Query:   131 DEAAVILQAKLKQL 144
                  ++  K++QL
Sbjct:   129 QAVMEMMSQKIQQL 142

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

DICTYBASE|DDB_G0280607 pfdn5 "prefoldin subunit 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 46/131 (35%), Positives = 84/131 (64%)

Query:    12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTAS 71
             +S+EQL+ ++EQ + E+  L +S+  ++ A+++   A  A+  L     G  MLVPLT+S
Sbjct:    14 LSLEQLQMVREQVEAEIQQLSESIQQLKHASNKYIEAKEAMGGLK-GTDGKDMLVPLTSS 72

Query:    72 LYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISD 131
             +Y+PG ++   KVLVDIGTGY+VE  +++G+++  RK+ L+    ++ ++ A   K  + 
Sbjct:    73 IYLPGKINSNEKVLVDIGTGYYVEMGIEQGQNFSNRKVQLITEQVNK-VQTAINMKRQNL 131

Query:   132 EAAV-ILQAKL 141
             E+ V + Q+K+
Sbjct:   132 ESIVQVAQSKI 142

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

FB|FBgn0038976 CG7048 [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 45/146 (30%), Positives = 86/146 (58%)

Query:     2 ASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQG 61
             A S+   + K+S EQL  IK++ + E+  +QDSL+ +    ++   +  AL       + 
Sbjct:     9 AKSEMIDLTKLSPEQLIQIKQEFEQEITNVQDSLSTLHGCQAKYAGSKEALGTFQPNWEN 68

Query:    62 AKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
              ++LVPLT+S+YVPG + D  + ++DIGTGY++EK ++  KDY +R++  ++   +++ +
Sbjct:    69 RQILVPLTSSMYVPGRVKDLNRFVIDIGTGYYIEKDLEGSKDYFKRRVEYVQEQIEKIEK 128

Query:   122 VATKKKTISDEAAVILQAKLKQLAPA 147
             +  +K    +    +L+  +KQ A A
Sbjct:   129 IHLQKTRFYNSVMSVLE--MKQAAAA 152

GO:0006457 "protein folding" evidence=ISS

GO:0016272 "prefoldin complex" evidence=ISS;IDA

GO:0051082 "unfolded protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RAY0	PFD5_PONAB	No assigned EC number	0.3432	0.8933	0.8701	yes	no
P57742	PFD5_ARATH	No assigned EC number	0.7718	0.9933	0.9867	yes	no
Q9VCZ8	PFD5_DROME	No assigned EC number	0.3138	0.9	0.8035	yes	no
Q8HYI9	PFD5_BOVIN	No assigned EC number	0.3432	0.8933	0.8701	yes	no
Q9WU28	PFD5_MOUSE	No assigned EC number	0.3432	0.8933	0.8701	yes	no
Q04493	PFD5_YEAST	No assigned EC number	0.3265	0.9066	0.8343	yes	no
Q99471	PFD5_HUMAN	No assigned EC number	0.3432	0.8933	0.8701	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
TIGR00293	126	TIGR00293, TIGR00293, prefoldin, archaeal alpha su	2e-31
cd00584	129	cd00584, Prefoldin_alpha, Prefoldin alpha subunit;	9e-30
pfam02996	120	pfam02996, Prefoldin, Prefoldin subunit	7e-29
cd00890	129	cd00890, Prefoldin, Prefoldin is a hexameric molec	7e-23
COG1730	145	COG1730, GIM5, Predicted prefoldin, molecular chap	4e-15
PRK03947	140	PRK03947, PRK03947, prefoldin subunit alpha; Revie	1e-12

>gnl|CDD|129394 TIGR00293, TIGR00293, prefoldin, archaeal alpha subunit/eukaryotic subunit 5

 Score =  108 bits (273), Expect = 2e-31
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 1/127 (0%)

Query: 14  VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLY 73
           ++QL A  +    +V  LQ  +  +R   + LE+A   L DL    +G + LVP+ A  +
Sbjct: 1   LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSF 59

Query: 74  VPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133
           V   + D  KVLV IG+GY+VEK  +E  ++ +++I  L+   ++L E   +  + + + 
Sbjct: 60  VKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119

Query: 134 AVILQAK 140
               Q  
Sbjct: 120 EQEAQQL 126

Members of this protein family, rich in coiled coil regions, are molecular chaperones in the class of the prefoldin (GimC) alpha subunit. Prefoldin is a hexamer of two alpha and four beta subunits. This protein appears universal in the archaea but is restricted to Aquifex aeolicus among bacteria so far. Eukaryotes have several related proteins; only prefoldin subunit 5, which appeared the most similar to archaeal prefoldin alpha, is included in this model. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil [Protein fate, Protein folding and stabilization]. Length = 126

>gnl|CDD|238327 cd00584, Prefoldin_alpha, Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score =  104 bits (262), Expect = 9e-30
 Identities = 42/129 (32%), Positives = 65/129 (50%)

Query: 14  VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLY 73
           +EQL A  +    E+  LQ  L  +  A +  E A   L  L    +G + LVPL A ++
Sbjct: 1   LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVF 60

Query: 74  VPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133
           V   + D  KVLVD+GTGY+VEK ++E  ++ ++KI  L    ++L +   K K   +  
Sbjct: 61  VKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTL 120

Query: 134 AVILQAKLK 142
              LQ   +
Sbjct: 121 EAELQELQQ 129

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|202504 pfam02996, Prefoldin, Prefoldin subunit

 Score =  101 bits (255), Expect = 7e-29
 Identities = 40/119 (33%), Positives = 62/119 (52%)

Query: 25  DLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKV 84
             E+  LQ  L  +R A   LE     L  L    +G ++LVPL A L+V G + D  KV
Sbjct: 2   KQEIESLQAELARLREAIEELEKTLETLKTLKKEDEGKEVLVPLGAGLFVKGEVIDTDKV 61

Query: 85  LVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ 143
           LVD+G GY+VEK+++E  ++ +++I  L+   ++L E   K K         LQ   ++
Sbjct: 62  LVDLGAGYYVEKSLEEAIEFLKKRIEELEKQLEKLEEELEKLKDQITTLEANLQQVQQK 120

This family comprises of several prefoldin subunits. The biogenesis of the cytoskeletal proteins actin and tubulin involves interaction of nascent chains of each of the two proteins with the oligomeric protein prefoldin (PFD) and their subsequent transfer to the cytosolic chaperonin CCT (chaperonin containing TCP-1). Electron microscopy shows that eukaryotic PFD, which has a similar structure to its archaeal counterpart, interacts with unfolded actin along the tips of its projecting arms. In its PFD-bound state, actin seems to acquire a conformation similar to that adopted when it is bound to CCT. Length = 120

>gnl|CDD|238453 cd00890, Prefoldin, Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 87.0 bits (216), Expect = 7e-23
 Identities = 36/129 (27%), Positives = 66/129 (51%)

Query: 14  VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLY 73
           +++L A  +Q   ++  LQ  L  +    +  E A   L  L    +  ++LVPL A L+
Sbjct: 1   LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLF 60

Query: 74  VPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA 133
           V   + D  KVLVD+GTG +VEK+++E  ++ ++++  L+   ++L +   K +    E 
Sbjct: 61  VKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITEL 120

Query: 134 AVILQAKLK 142
              LQ   +
Sbjct: 121 QEELQQLQQ 129

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|224644 COG1730, GIM5, Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

 Score = 67.4 bits (165), Expect = 4e-15
 Identities = 36/138 (26%), Positives = 70/138 (50%)

Query: 13  SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASL 72
            +E+L A  +    ++  LQ  +  +  A S L++A   L +L    +G ++LVP+ A L
Sbjct: 7   ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGL 66

Query: 73  YVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDE 132
           +V   + D  KV+V IG+GY+ EK+ DE  ++ +++I  L+   ++L +   +     ++
Sbjct: 67  FVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQ 126

Query: 133 AAVILQAKLKQLAPASSS 150
                Q   ++ A A   
Sbjct: 127 LEQEAQQLQQKQAAAQKK 144

Length = 145

>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 14  VEQLKAIKEQTDL---EVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             QL+A++ Q +    ++  LQ S+N + TA   LE   +         +G + LVP+ A
Sbjct: 12  AAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSK-------GEGKETLVPIGA 64

Query: 71  SLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS 130
             +V   + D  KV+V +G GY  EK +DE  +  +++   L+   ++L E   K  +  
Sbjct: 65  GSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRI 124

Query: 131 DEAAVILQAKLKQLA 145
            + A  LQ   ++ A
Sbjct: 125 AQLAQELQQLQQEAA 139

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG3048	153	consensus Molecular chaperone Prefoldin, subunit 5	100.0
PRK14011	144	prefoldin subunit alpha; Provisional	100.0
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	100.0
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	100.0
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	99.98
PRK03947	140	prefoldin subunit alpha; Reviewed	99.98
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	99.97
PRK01203	130	prefoldin subunit alpha; Provisional	99.97
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.96
KOG3313	187	consensus Molecular chaperone Prefoldin, subunit 3	99.7
KOG3047	157	consensus Predicted transcriptional regulator UXT	99.58
KOG3130	514	consensus Uncharacterized conserved protein [Funct	99.38
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	99.12
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	98.96
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	98.58
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	98.58
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	98.52
PRK09343	121	prefoldin subunit beta; Provisional	98.32
PRK03947	140	prefoldin subunit alpha; Reviewed	98.3
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	98.29
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	98.16
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	98.08
PRK01203	130	prefoldin subunit alpha; Provisional	98.03
PRK14011	144	prefoldin subunit alpha; Provisional	97.71
PF13758	99	Prefoldin_3: Prefoldin subunit	97.54
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	97.44
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	97.05
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	96.76
PRK00736	68	hypothetical protein; Provisional	90.73
PF08946	46	Osmo_CC: Osmosensory transporter coiled coil; Inte	87.51
PRK05771	646	V-type ATP synthase subunit I; Validated	87.51
PF13118	126	DUF3972: Protein of unknown function (DUF3972)	87.49
PRK00295	68	hypothetical protein; Provisional	86.68
PRK02793	72	phi X174 lysis protein; Provisional	84.52
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	84.39
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	83.19
PRK04406	75	hypothetical protein; Provisional	82.49
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	82.01
KOG1760	131	consensus Molecular chaperone Prefoldin, subunit 4	80.71
PRK04325	74	hypothetical protein; Provisional	80.67
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	80.12

>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-41  Score=243.96  Aligned_cols=142  Identities=46%  Similarity=0.722  Sum_probs=138.4

Q ss_pred             CCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEc
Q 031977            1 MAS-SKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLD   79 (150)
Q Consensus         1 m~~-~~~i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~   79 (150)
                      |++ ++.|||+.|||+||.++++++++|++.|+.++++|..+..+|.+|+++|+.+...++|+++||||++++||||++.
T Consensus         1 ma~~s~~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTsSlYVPGkl~   80 (153)
T KOG3048|consen    1 MAEESKGIDLTKLSLEQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTSSLYVPGKLS   80 (153)
T ss_pred             CCCcccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEecccceeccceec
Confidence            665 7889999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             CCCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           80 DARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK  142 (150)
Q Consensus        80 ~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~  142 (150)
                      |.++++||||+|||||+|.++|++||+||+++|.+++++++..+.++......+.++++.|.+
T Consensus        81 d~~k~lVDIGTGYyVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK~~~~~~v~~v~q~Kv~  143 (153)
T KOG3048|consen   81 DNSKFLVDIGTGYYVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEKTRTRASVMDVLQAKVQ  143 (153)
T ss_pred             cccceeEeccCceEEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999984

>PRK14011 prefoldin subunit alpha; Provisional

Probab=100.00  E-value=8.3e-34  Score=209.79  Aligned_cols=129  Identities=15%  Similarity=0.237  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF   93 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~   93 (150)
                      ++++....+.+.++++.|++++..|+.++.+|..|+++|+.++.   +.++|||||+|+||||+|.|+++|+|+||+|||
T Consensus         5 lq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~---~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~   81 (144)
T PRK14011          5 LQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKT---SEEILIPLGPGAFLKAKIVDPDKAILGVGSDIY   81 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---CCeEEEEcCCCcEEeEEecCCCeEEEEccCCeE
Confidence            67788888999999999999999999999999999999998763   689999999999999999999999999999999


Q ss_pred             eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977           94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA  145 (150)
Q Consensus        94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~  145 (150)
                      ||+|.++|++||+||+++|++..+++...+.+++..+..+...++.++++++
T Consensus        82 VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~  133 (144)
T PRK14011         82 LEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIE  133 (144)
T ss_pred             EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988763

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=100.00  E-value=4.5e-32  Score=196.13  Aligned_cols=125  Identities=30%  Similarity=0.462  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF   93 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~   93 (150)
                      +++|.+.+++++++++.|++++..|+..+.+|..++++|+.++.. .+.++|||||+|+||+|+|+++++|+||||+|||
T Consensus         1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~   79 (126)
T TIGR00293         1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYY   79 (126)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEE
Confidence            478999999999999999999999999999999999999999864 6789999999999999999999999999999999


Q ss_pred             eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA  139 (150)
Q Consensus        94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~  139 (150)
                      ||+|+++|++||++|++.+++.++++.+.+.+++.+++.+.+.+++
T Consensus        80 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~  125 (126)
T TIGR00293        80 VEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ  125 (126)
T ss_pred             EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999875

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-31  Score=196.76  Aligned_cols=135  Identities=25%  Similarity=0.416  Sum_probs=128.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEcc
Q 031977           10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIG   89 (150)
Q Consensus        10 ~~l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG   89 (150)
                      +..++++|.+.++.++.+++.|++++..|+.++.++..|+++|+.++...+|.++|||+|+|+|++|++.++++|+|+||
T Consensus         4 ~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iG   83 (145)
T COG1730           4 TQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIG   83 (145)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcC
Confidence            46789999999999999999999999999999999999999999998655588999999999999999999999999999


Q ss_pred             CceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977           90 TGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL  144 (150)
Q Consensus        90 ~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~  144 (150)
                      +|||||+|+++|++||++|++.|++.+.++++.|.++...+..+.+.+++..+..
T Consensus        84 sg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~  138 (145)
T COG1730          84 SGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ  138 (145)
T ss_pred             CceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998876644

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.98  E-value=6.3e-31  Score=190.82  Aligned_cols=128  Identities=33%  Similarity=0.489  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF   93 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~   93 (150)
                      +++|...+++++.+++.+++++..|+..+.+|..++++|+.+++.+.+.++|||||+|+|++|+|+++++|+||||+|||
T Consensus         1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~   80 (129)
T cd00584           1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY   80 (129)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Confidence            47899999999999999999999999999999999999999986556899999999999999999999999999999999


Q ss_pred             eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL  141 (150)
Q Consensus        94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~  141 (150)
                      ||+|+++|++||++|++.+++.++++.+.+..++++++.+...+++++
T Consensus        81 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~  128 (129)
T cd00584          81 VEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ  128 (129)
T ss_pred             EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998764

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=99.98  E-value=1.8e-30  Score=191.06  Aligned_cols=134  Identities=26%  Similarity=0.423  Sum_probs=127.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCc
Q 031977           12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG   91 (150)
Q Consensus        12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g   91 (150)
                      -.+++|...+++++++++.|+.++..|...+.++..++++|+.|++...+.+++||||+|+|++|+|+++++|+||||+|
T Consensus         6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g   85 (140)
T PRK03947          6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAG   85 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCC
Confidence            35789999999999999999999999999999999999999999865568999999999999999999999999999999


Q ss_pred             eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977           92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA  145 (150)
Q Consensus        92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~  145 (150)
                      ||||+|+++|++||++|++.+++.++.+.+.+.+++.+++.+...+++..++.+
T Consensus        86 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~  139 (140)
T PRK03947         86 YSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA  139 (140)
T ss_pred             EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999998776543

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=99.97  E-value=4.4e-30  Score=183.66  Aligned_cols=119  Identities=26%  Similarity=0.505  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHH
Q 031977           25 DLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDY  104 (150)
Q Consensus        25 ~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~  104 (150)
                      +++++.+++++..|+..+.+|..++++|+.|+..+.+.++|||+|+|+||||+|+++++|+|+||+|||||+|+++|++|
T Consensus         2 ~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~   81 (120)
T PF02996_consen    2 QEELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEF   81 (120)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHH
Confidence            34567899999999999999999999999998656789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977          105 CERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ  143 (150)
Q Consensus       105 l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~  143 (150)
                      +++|++.+++.++++.+.+.+++.+++.+...|++.+++
T Consensus        82 l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~  120 (120)
T PF02996_consen   82 LKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ  120 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999998764

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>PRK01203 prefoldin subunit alpha; Provisional

Probab=99.97  E-value=1.7e-28  Score=177.93  Aligned_cols=119  Identities=12%  Similarity=0.290  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceee
Q 031977           15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV   94 (150)
Q Consensus        15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~v   94 (150)
                      +++....+.++++++.|+++++.|+.++.+|.+|+++|+.++. +++.++|||||+|+||||+|.|+++|+|+||+||||
T Consensus         3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~-~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~V   81 (130)
T PRK01203          3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNEL-DNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYI   81 (130)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEE
Confidence            5677888889999999999999999999999999999999763 457899999999999999999999999999999999


Q ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA  134 (150)
Q Consensus        95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~  134 (150)
                      |+|.+++++|++++++.|++.+......+..+..++..+.
T Consensus        82 EK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         82 AEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888888888888888888888888777766

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.96  E-value=5.5e-28  Score=174.35  Aligned_cols=128  Identities=28%  Similarity=0.449  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF   93 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~   93 (150)
                      +++|...+++++++++.|++++..|...+.+|..+++.|+.+.....+.++++|+|+++|+||+|+++++|+|+||+|||
T Consensus         1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~   80 (129)
T cd00890           1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY   80 (129)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Confidence            47899999999999999999999999999999999999999987667789999999999999999999999999999999


Q ss_pred             eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL  141 (150)
Q Consensus        94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~  141 (150)
                      ||+|.++|.+|+++|++.+++.++++.+.+..+..+++.+...|++++
T Consensus        81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~  128 (129)
T cd00890          81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ  128 (129)
T ss_pred             EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998764

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=5.5e-16  Score=116.63  Aligned_cols=122  Identities=13%  Similarity=0.173  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCceEEEecCCceeEeEEEcCCCeEEEEccCc
Q 031977           15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR---PQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG   91 (150)
Q Consensus        15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~---~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g   91 (150)
                      .-+...+.+..---..+.++...|...+++++.+++.+..|...   +++.++.+-|..|+|.+|.|+++++|++|+|++
T Consensus        40 ~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAn  119 (187)
T KOG3313|consen   40 KKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGAN  119 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecce
Confidence            33334444444444567788899999999999999999998643   244799999999999999999999999999999


Q ss_pred             eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVI  136 (150)
Q Consensus        92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~  136 (150)
                      +++|++++||.++|++++..+.++++.+.+++..++.++++++--
T Consensus       120 VMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTtEVN  164 (187)
T KOG3313|consen  120 VMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTTEVN  164 (187)
T ss_pred             eEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceeeeee
Confidence            999999999999999999999999999999999999999987543

>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]

Probab=99.58  E-value=7.7e-14  Score=100.58  Aligned_cols=115  Identities=15%  Similarity=0.263  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHH
Q 031977           27 EVNLLQDSLNNIRTATSRLESASTALHDLSL-RPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYC  105 (150)
Q Consensus        27 e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~-~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l  105 (150)
                      .+..-......++....+|...+-+++.|.. ..+..+.-++||+++|+...++|+++|+|.+|.|||+|+++.+|++|+
T Consensus        31 di~k~~d~~dKl~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf~  110 (157)
T KOG3047|consen   31 DIAKEEDEFDKLQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKFC  110 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHHH
Confidence            3344445556667777778777777777542 234567789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977          106 ERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL  141 (150)
Q Consensus       106 ~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~  141 (150)
                      +|+.+.|.+..+++++.-..++..+.++.+.++..+
T Consensus       111 DRK~dlLkel~ekLqKdsmkiKa~ihMLLagl~elq  146 (157)
T KOG3047|consen  111 DRKMDLLKELMEKLQKDSMKIKADIHMLLAGLDELQ  146 (157)
T ss_pred             HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhc
Confidence            999999999999999999999999999999887654

>KOG3130 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=2.7e-12  Score=107.41  Aligned_cols=109  Identities=17%  Similarity=0.274  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHH
Q 031977           22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEG  101 (150)
Q Consensus        22 ~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA  101 (150)
                      ..+.+-+..++...+.++.--..|...++.+..+++ +.+.+||||+|.-.|+||++.++|.|+|.+|.|||.++|...|
T Consensus         6 ~e~~~a~~~~~~ete~~~~v~~dye~~~erl~~~~k-kLs~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~~CS~h~A   84 (514)
T KOG3130|consen    6 AECNAAKARLEVETECRKKVDNDYEALRERLSTLPK-KLSYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFAKCSAHQA   84 (514)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHhhh-hcccceeeecccccccccceeeechhhhhhccchHhhhhHHHH
Confidence            334445566777778888889999999999999985 6789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977          102 KDYCERKINLLKSNFDQLIEVATKKKTISD  131 (150)
Q Consensus       102 ~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~  131 (150)
                      .+++++|++.++++++++...+.-.-.+++
T Consensus        85 ~~I~~~R~~~~r~q~~~l~~~~~n~~~~vk  114 (514)
T KOG3130|consen   85 VGIVEHRKEHVRKQIDDLKKVMKNFESRVK  114 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence            999999999999999999777766555544

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=99.12  E-value=2e-09  Score=76.20  Aligned_cols=107  Identities=14%  Similarity=0.116  Sum_probs=98.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCc
Q 031977           12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG   91 (150)
Q Consensus        12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g   91 (150)
                      ..++++..-+++++++++.+..++..|...+.++..+++.|+.|++   +..++-++|+                     
T Consensus         3 ~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~---d~~vyk~VG~---------------------   58 (110)
T TIGR02338         3 PQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPD---DTPVYKSVGN---------------------   58 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---cchhHHHhch---------------------
Confidence            3467888889999999999999999999999999999999999974   5677788877                     


Q ss_pred             eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK  142 (150)
Q Consensus        92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~  142 (150)
                      +||+.|.++|+..+++|++.++..++.+.+.+..++..+..+...|+..+.
T Consensus        59 vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~  109 (110)
T TIGR02338        59 LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA  109 (110)
T ss_pred             hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999987763

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=98.96  E-value=1.7e-08  Score=70.84  Aligned_cols=102  Identities=11%  Similarity=0.101  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceee
Q 031977           15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV   94 (150)
Q Consensus        15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~v   94 (150)
                      +++..-++.++++++.+..++..|...+.++..+.+.|..+++   +..++.++|+                     +||
T Consensus         2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~---d~~vy~~VG~---------------------vfv   57 (105)
T cd00632           2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLAD---DAEVYKLVGN---------------------VLV   57 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---cchHHHHhhh---------------------HHh
Confidence            4567778888899999999999999999999999999999874   5577777777                     999


Q ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK  140 (150)
Q Consensus        95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~  140 (150)
                      ++|.++|...++.|++.++..++.+.+.+..+..++..+...|+..
T Consensus        58 ~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~  103 (105)
T cd00632          58 KQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA  103 (105)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888753

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=98.58  E-value=3.7e-06  Score=58.20  Aligned_cols=103  Identities=16%  Similarity=0.197  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceee
Q 031977           15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV   94 (150)
Q Consensus        15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~v   94 (150)
                      +++..-.+.+..++..+..++..+.....++..+.+.|+.+++   +..++..+|                     ++||
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~---~~~~y~~vG---------------------~~fv   56 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDD---DRKVYKSVG---------------------KMFV   56 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST---T-EEEEEET---------------------TEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cchhHHHHh---------------------HHHH
Confidence            3455666777788888999999999999999999999988864   334444444                     4599


Q ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL  141 (150)
Q Consensus        95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~  141 (150)
                      +.|.+++.+.++.+++.++..++++...+..+...+..+...+..++
T Consensus        57 ~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~  103 (106)
T PF01920_consen   57 KQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF  103 (106)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999988876543

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=98.58  E-value=1.1e-06  Score=63.01  Aligned_cols=107  Identities=21%  Similarity=0.304  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------------CCCceEEEecCCceeEeEEEcC
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR-------------PQGAKMLVPLTASLYVPGTLDD   80 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~-------------~~~~eilvplg~~~yv~g~i~~   80 (150)
                      .++|....+.+.+.+..+...+..+......+....++.......             .++.+++|++|.|+||...+.+
T Consensus         8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~e   87 (129)
T cd00890           8 LQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEE   87 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHH
Confidence            466777777788888888888888888877777666554442210             1467899999999999999887


Q ss_pred             CCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           81 ARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA  133 (150)
Q Consensus        81 ~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v  133 (150)
                      .             ...+++.+++++++++.+++.+..+...+..+...+..+
T Consensus        88 A-------------~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~  127 (129)
T cd00890          88 A-------------IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL  127 (129)
T ss_pred             H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6             578999999999999999999999999999999988765

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=98.52  E-value=1.4e-06  Score=62.71  Aligned_cols=111  Identities=21%  Similarity=0.316  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHH
Q 031977           22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEG  101 (150)
Q Consensus        22 ~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA  101 (150)
                      +++.++.+.++++++.|...+..+..++..++...      +++      -++++.  +...++|++|+|+||+-++++.
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~------~~L------~~l~~~--~~~~~lv~lg~~~~v~~~v~~~   67 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAI------ETL------EDLKGA--EGKETLVPVGAGSFVKAKVKDT   67 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH------Hhcccc--CCCeEEEEcCCCeEEEEEeCCC
Confidence            46677788899999999999999998888777753      222      222333  5678999999999999999988


Q ss_pred             H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 031977          102 K-------------DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAP  146 (150)
Q Consensus       102 ~-------------~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~  146 (150)
                      .             .-++.-++++++.++.+.+.+..+...+..+.+.+..-...+++
T Consensus        68 ~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~  125 (126)
T TIGR00293        68 DKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ  125 (126)
T ss_pred             CEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7             67799999999999999999999999999999999887766553

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PRK09343 prefoldin subunit beta; Provisional

Probab=98.32  E-value=3.2e-05  Score=55.69  Aligned_cols=109  Identities=16%  Similarity=0.144  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF   93 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~   93 (150)
                      ++++..-.+.++++++.+..+...+.....+...+++-|+.|++   +..                    |+-.|| .+|
T Consensus         9 ~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~---d~~--------------------VYk~VG-~vl   64 (121)
T PRK09343          9 VQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPD---DTP--------------------IYKIVG-NLL   64 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---cch--------------------hHHHhh-HHH
Confidence            56777778888899999999999999999999999988888864   223                    333444 377


Q ss_pred             eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 031977           94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAP  146 (150)
Q Consensus        94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~  146 (150)
                      |..|.++|+.-++.|+++++..+..+.+....++..+..+...|+..+++.-+
T Consensus        65 v~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~  117 (121)
T PRK09343         65 VKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP  117 (121)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            88899999999999999999999999999999999999999999998876544

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=98.30  E-value=1.5e-05  Score=58.30  Aligned_cols=116  Identities=17%  Similarity=0.275  Sum_probs=88.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY   92 (150)
Q Consensus        13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~   92 (150)
                      +-++|..+..++    +.++..++.|...+..+...+..+.....   ..+         ++++. .+..+++|+||+|+
T Consensus         4 ~~~~l~~l~~~~----~~l~~~~~~l~~~~~~l~~~~~e~~~~~e---~l~---------~l~~~-~~~~e~lvplg~~~   66 (140)
T PRK03947          4 SEQELEELAAQL----QALQAQIEALQQQLEELQASINELDTAKE---TLE---------ELKSK-GEGKETLVPIGAGS   66 (140)
T ss_pred             cHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---------hhccc-CCCCeEEEEcCCCc
Confidence            344555555555    55888888888888888877766655431   111         22332 25689999999999


Q ss_pred             eeecCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977           93 FVEKTMDEGKD-------------YCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA  145 (150)
Q Consensus        93 ~vE~~~~eA~~-------------~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~  145 (150)
                      ||+.++++..+             .++.-++++++.++.+...+..+...+..+...++.....++
T Consensus        67 yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~  132 (140)
T PRK03947         67 FVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ  132 (140)
T ss_pred             EEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999976655             779999999999999999999999999999998887766544

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=98.29  E-value=2e-05  Score=56.85  Aligned_cols=107  Identities=21%  Similarity=0.279  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhccCC-------CCCceEEEecCCceeEeEEEcC
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST------ALHDLSLR-------PQGAKMLVPLTASLYVPGTLDD   80 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e------~l~~L~~~-------~~~~eilvplg~~~yv~g~i~~   80 (150)
                      +++|....+.+.++++.++..+..+...+..+.....      ++-.+..+       ....+++||+|+|+||...+.+
T Consensus         8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~e   87 (129)
T cd00584           8 LQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEE   87 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHH
Confidence            4667777778888888899888888877777665543      11111110       2357899999999999999987


Q ss_pred             CCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           81 ARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA  133 (150)
Q Consensus        81 ~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v  133 (150)
                      ..             ..++.-++.++++++.+++.+.++...+..+...+..+
T Consensus        88 A~-------------~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~  127 (129)
T cd00584          88 AI-------------EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL  127 (129)
T ss_pred             HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55             67899999999999999999999999999999888764

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=7.6e-05  Score=53.60  Aligned_cols=108  Identities=19%  Similarity=0.185  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF   93 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~   93 (150)
                      .+++..-.++++++++.+-.+..++...+.+...+++-|+.+..   +.                    .|+=.+| ++|
T Consensus         8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~e---D~--------------------~vYk~VG-~ll   63 (119)
T COG1382           8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDE---DA--------------------PVYKKVG-NLL   63 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cc--------------------HHHHHhh-hHH
Confidence            45666677888888999999999999999998888888888764   21                    2333344 578


Q ss_pred             eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977           94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA  145 (150)
Q Consensus        94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~  145 (150)
                      |..+.++|.+=++.|++.++..++.+++....++.++..+.+.|+.++....
T Consensus        64 vk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~  115 (119)
T COG1382          64 VKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAA  115 (119)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            8889999999999999999999999999999999999999999999886543

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=3.1e-05  Score=57.48  Aligned_cols=111  Identities=19%  Similarity=0.305  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHH
Q 031977           21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDE  100 (150)
Q Consensus        21 ~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~e  100 (150)
                      .+++.++++.|+.+++.|+..+..+..++..+.....   ..+.+--.+.          ...++|++|+|.||.-.+..
T Consensus         8 le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~---tl~~lk~~~~----------g~E~LVpvGag~fv~~kv~~   74 (145)
T COG1730           8 LEELAAQLQILQSQIESLQAQIAALNAAISELQTAIE---TLENLKGAGE----------GKEVLVPVGAGLFVKAKVKD   74 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCC----------CceEEEEcCCCceEEEEecc
Confidence            3455555566777777777777777666555544221   1111111111          22677777777777776666


Q ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977          101 -------------GKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL  144 (150)
Q Consensus       101 -------------A~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~  144 (150)
                                   |..-++.=+++|++.++++.+.+..++..+..+.+.+++..+..
T Consensus        75 ~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~  131 (145)
T COG1730          75 MDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA  131 (145)
T ss_pred             CceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         55566777777777777777777777777777777666655443

>PRK01203 prefoldin subunit alpha; Provisional

Probab=98.03  E-value=0.00015  Score=52.98  Aligned_cols=102  Identities=21%  Similarity=0.384  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecC
Q 031977           22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHD----LSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKT   97 (150)
Q Consensus        22 ~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~----L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~   97 (150)
                      +.+.++++.++++++.|+..+..+..+..-+..    |..                  ..-.+.+.|+|+||+|.||-=.
T Consensus         3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~------------------~~~~~~~eiLVPLg~slYV~gk   64 (130)
T PRK01203          3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD------------------NELDNSKELLISIGSGIFADGN   64 (130)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------------cccCCCCeEEEEccCCceEeEE
Confidence            356788899999999999999888876554433    321                  1123568999999999999988


Q ss_pred             HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           98 MDEGKD-------------YCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL  141 (150)
Q Consensus        98 ~~eA~~-------------~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~  141 (150)
                      +.+..+             -++++++++++++++++..+..+++.+..+...+....
T Consensus        65 i~d~~kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         65 IKKDKDLIVPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             ecCCCeEEEEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877665             35789999999999999999999999999999988775

>PRK14011 prefoldin subunit alpha; Provisional

Probab=97.71  E-value=0.00084  Score=49.83  Aligned_cols=117  Identities=10%  Similarity=0.119  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C---------CCCceEEEecCCceeEeEEEcCCCe
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL-R---------PQGAKMLVPLTASLYVPGTLDDARK   83 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~-~---------~~~~eilvplg~~~yv~g~i~~~~~   83 (150)
                      ++.+.+..+.|.+.++.|+.....+..++..+......-+.|=| +         .+..+++|++|.|+||.=.+.+.- 
T Consensus        12 l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~-   90 (144)
T PRK14011         12 LEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVI-   90 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHHH-
Confidence            45666666667777777777777777766666533222122211 1         234578888888888877766532 


Q ss_pred             EEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977           84 VLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ  143 (150)
Q Consensus        84 VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~  143 (150)
                                  ..++.=++++++..+.+.+.++++.+.+..+...+..-...++++.++
T Consensus        91 ------------~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~~  138 (144)
T PRK14011         91 ------------EDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQAQ  138 (144)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                        234566777778888888888888888777777766665555544443

>PF13758 Prefoldin_3: Prefoldin subunit

Probab=97.54  E-value=7.4e-05  Score=51.96  Aligned_cols=94  Identities=17%  Similarity=0.233  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccC-CCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHHHHHHHH
Q 031977           34 SLNNIRTATSRLESASTALHDLSL-RPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLL  112 (150)
Q Consensus        34 ~~~~L~~~~~e~~~~~e~l~~L~~-~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l  112 (150)
                      ++..++.--.+|+..++-|..|+. .+...+=+.-++.++  .|++.+.+.|=.-+|.|-.+.+|.++++++++||++.+
T Consensus         3 sL~hWq~w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f--~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV   80 (99)
T PF13758_consen    3 SLYHWQTWEAEYEGLKEEIEALPEDDDATREDLLRIRRDF--GGSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYV   80 (99)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHhc--CcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            456666777788888888888863 222334455555543  58888888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 031977          113 KSNFDQLIEVATKKKTI  129 (150)
Q Consensus       113 ~~~~~~l~~~l~~~~~~  129 (150)
                      ++++..+++.+..-...
T Consensus        81 ~~Ni~tleKql~~aE~k   97 (99)
T PF13758_consen   81 QQNIETLEKQLEAAENK   97 (99)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999998776544

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.0029  Score=46.06  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCc
Q 031977           12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG   91 (150)
Q Consensus        12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g   91 (150)
                      .+-+.+..-++++..+++.|.+.+..|.....++.-.+++|+.+.+   +..++=                     .=.|
T Consensus        15 ~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp---~RKCfR---------------------mIgG   70 (140)
T KOG4098|consen   15 SSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDP---TRKCFR---------------------MIGG   70 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCh---hhHHHH---------------------Hhcc
Confidence            3445677788999999999999999999999999999999999865   222211                     1147


Q ss_pred             eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           92 YFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV  135 (150)
Q Consensus        92 ~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~  135 (150)
                      +.||+|+.+..=.|...++.++..+..+..++.++..+++....
T Consensus        71 vLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~  114 (140)
T KOG4098|consen   71 VLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKK  114 (140)
T ss_pred             chhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999887654

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.033  Score=39.50  Aligned_cols=110  Identities=13%  Similarity=0.156  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceee
Q 031977           15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFV   94 (150)
Q Consensus        15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~v   94 (150)
                      +.+..-+++|+.++...-...+.|...+.+-.-.++-++.|.+                       +++|+=-+| .+.|
T Consensus         8 ee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~-----------------------d~~VYKliG-pvLv   63 (120)
T KOG3478|consen    8 EEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEE-----------------------DSNVYKLIG-PVLV   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcc-----------------------cchHHHHhc-chhh
Confidence            3444445555555555555555555555444444444444432                       223333333 3667


Q ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCc
Q 031977           95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAPAS  148 (150)
Q Consensus        95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~~~  148 (150)
                      .-+.+||..-+.+|++++...+..+...+..+..+....++.+-+..++.|++.
T Consensus        64 kqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~~  117 (120)
T KOG3478|consen   64 KQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPAA  117 (120)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            889999999999999999999999999999999999999998887777777554

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=96.76  E-value=0.028  Score=39.50  Aligned_cols=62  Identities=19%  Similarity=0.250  Sum_probs=51.7

Q ss_pred             CCceEEEecCCceeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           60 QGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAA  134 (150)
Q Consensus        60 ~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~  134 (150)
                      ...+++|+||+|+||.-.+.+.-+             -++.=++.+++.++.+++.+..+...+..+...+..+.
T Consensus        57 ~~~~vlV~lG~~~~vE~s~~eA~~-------------~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~  118 (120)
T PF02996_consen   57 DTDKVLVSLGAGYYVEMSLEEAIE-------------FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY  118 (120)
T ss_dssp             STTEEEEEEETTEEEEEEHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CCCEEEEEeeCCeEEEecHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467899999999999999887543             35677888899999999999999999998888887764

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>PRK00736 hypothetical protein; Provisional

Probab=90.73  E-value=2.6  Score=27.15  Aligned_cols=46  Identities=11%  Similarity=0.076  Sum_probs=36.1

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL  141 (150)
Q Consensus        96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~  141 (150)
                      ||.++-+.-|+-|+.+.+..++.++..+..-..+|..+...++...
T Consensus         1 ~~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~   46 (68)
T PRK00736          1 MDAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT   46 (68)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667778888888888888888888888888888777776665443

>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters

Probab=87.51  E-value=1.6  Score=26.08  Aligned_cols=37  Identities=8%  Similarity=0.154  Sum_probs=18.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEA  133 (150)
Q Consensus        97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v  133 (150)
                      +..||+++|...-+.++..++.+..+|+++.+....+
T Consensus         2 d~~EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~L   38 (46)
T PF08946_consen    2 DRAEAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRL   38 (46)
T ss_dssp             -------------THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence            4578999998888888888888888887777664433

It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.

>PRK05771 V-type ATP synthase subunit I; Validated

Probab=87.51  E-value=22  Score=32.24  Aligned_cols=40  Identities=15%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031977           17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS   56 (150)
Q Consensus        17 L~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~   56 (150)
                      .....+.+.+++..+.+++..|+..+.++.+.++.|+-+.
T Consensus        91 ~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~  130 (646)
T PRK05771         91 VEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWG  130 (646)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3456677778888888888888888888888888777754

>PF13118 DUF3972: Protein of unknown function (DUF3972)

Probab=87.49  E-value=2.1  Score=31.11  Aligned_cols=75  Identities=17%  Similarity=0.195  Sum_probs=44.7

Q ss_pred             CCCceEEEecCCce--eEeEEEcCCCeEEEEc-c-----CceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           59 PQGAKMLVPLTASL--YVPGTLDDARKVLVDI-G-----TGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS  130 (150)
Q Consensus        59 ~~~~eilvplg~~~--yv~g~i~~~~~VlV~l-G-----~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~  130 (150)
                      .++..+++++++|.  +||+.-.    -+++- .     ...|||+|..--....++=+..-++.+..+.++-..++..+
T Consensus        26 ~e~g~~~Ie~~~g~~~~v~~~~~----~~~~~~~~~~~~~~~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl  101 (126)
T PF13118_consen   26 NEDGKIYIEASSGTKALVPKAEN----ELVSMNMSSHALDPMFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEAL  101 (126)
T ss_pred             ccCCeEEEEcCcchHHHhhHHHH----HHHhhcccccccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            35678999999987  4443322    11111 1     12599999766666666666666666666666666665555


Q ss_pred             HHHHHHH
Q 031977          131 DEAAVIL  137 (150)
Q Consensus       131 ~~v~~~i  137 (150)
                      -.+.+..
T Consensus       102 ~s~QE~y  108 (126)
T PF13118_consen  102 YSMQELY  108 (126)
T ss_pred             HHHHHHH
Confidence            5554444

>PRK00295 hypothetical protein; Provisional

Probab=86.68  E-value=6.5  Score=25.31  Aligned_cols=47  Identities=13%  Similarity=0.227  Sum_probs=35.2

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK  142 (150)
Q Consensus        96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~  142 (150)
                      +|.++-+.-|+-|+.+.+..++.++..+..-..++..+...++....
T Consensus         1 ~~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~   47 (68)
T PRK00295          1 MSLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK   47 (68)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777888888888888888888888888777777766655443

>PRK02793 phi X174 lysis protein; Provisional

Probab=84.52  E-value=8.8  Score=24.95  Aligned_cols=48  Identities=8%  Similarity=0.072  Sum_probs=35.3

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977           96 KTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ  143 (150)
Q Consensus        96 ~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~  143 (150)
                      .+.++-+.-|+-|+.+.+..++.+++.+..-..+|..+...++....+
T Consensus         4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r   51 (72)
T PRK02793          4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEK   51 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777888888888888888888888887777777666555443

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=84.39  E-value=2.6  Score=26.62  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=24.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977            7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNN   37 (150)
Q Consensus         7 i~l~~l~~~qL~~~~~ql~~e~~~l~~~~~~   37 (150)
                      -||+.||+.+|......|+.|+..+.+.+..
T Consensus        16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~   46 (59)
T PF06698_consen   16 EDLSLLSVEELEERIALLEAEIARLEAAIAK   46 (59)
T ss_pred             CCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999888888888877665543

The function of this family is unknown.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=83.19  E-value=9.7  Score=24.41  Aligned_cols=47  Identities=19%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977           98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL  144 (150)
Q Consensus        98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~  144 (150)
                      .++-+.-|+-|+.+.+..++.++..+..-..+|..+...++.....+
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl   48 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL   48 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777777777777777777777766666555443

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK04406 hypothetical protein; Provisional

Probab=82.49  E-value=11  Score=24.69  Aligned_cols=46  Identities=7%  Similarity=0.173  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977           98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ  143 (150)
Q Consensus        98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~  143 (150)
                      .++-+.-|+-|+.+.+..++.+++.+..-..++..+...++....+
T Consensus         9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r   54 (75)
T PRK04406          9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK   54 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777777778888888888877777777776666655443

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=82.01  E-value=6.8  Score=28.42  Aligned_cols=41  Identities=15%  Similarity=0.218  Sum_probs=30.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           97 TMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVIL  137 (150)
Q Consensus        97 ~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i  137 (150)
                      ++..|+++|..||+.+..++++..+....++.+...+..-+
T Consensus        58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv   98 (126)
T PF07889_consen   58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDV   98 (126)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence            45678888888888888888888777777777776665444

The region featured in this family is approximately 100 amino acids long.

>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]

Probab=80.71  E-value=19  Score=26.13  Aligned_cols=52  Identities=23%  Similarity=0.268  Sum_probs=46.0

Q ss_pred             ceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           91 GYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK  142 (150)
Q Consensus        91 g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~  142 (150)
                      .+|+-++.++..+.|+...+.+.+.++.+...+..+..++..+-.+|=.|..
T Consensus        72 dvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFg  123 (131)
T KOG1760|consen   72 DVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVLYAKFG  123 (131)
T ss_pred             hhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4778889999999999999999999999999999999999999888876654

>PRK04325 hypothetical protein; Provisional

Probab=80.67  E-value=13  Score=24.25  Aligned_cols=43  Identities=14%  Similarity=0.135  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           98 MDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK  140 (150)
Q Consensus        98 ~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~  140 (150)
                      .++-+.-|+-|+.+.+..++.|+..+..-..++..+...++..
T Consensus         7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L   49 (74)
T PRK04325          7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL   49 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455677777888888888888888877777777666555444

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=80.12  E-value=20  Score=28.89  Aligned_cols=114  Identities=11%  Similarity=0.121  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCceEEEecCCceeE----eEEEcCCCeEEEEccCceee
Q 031977           22 EQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR---PQGAKMLVPLTASLYV----PGTLDDARKVLVDIGTGYFV   94 (150)
Q Consensus        22 ~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~---~~~~eilvplg~~~yv----~g~i~~~~~VlV~lG~g~~v   94 (150)
                      ++++.++..+.+.+...+..+.+++.-+..+..-...   ..+.-.+...+...+-    .|.+.+++.+ +..|.+=-+
T Consensus         2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~-~~~~~~~si   80 (248)
T PF08172_consen    2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSI-IGGGGDSSI   80 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccC-CCCCCcccH
Confidence            3455566667777777777777777666666643110   0011111111111111    1233333321 122222111


Q ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVI  136 (150)
Q Consensus        95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~  136 (150)
                      =-=+-.=.+-|..|..+|++.+.+....+..++.++..+..-
T Consensus        81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D  122 (248)
T PF08172_consen   81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD  122 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111233356677777777777777777777777777766543

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
2zdi_C	151	Crystal Structure Of Prefoldin From Pyrococcus Hori		1e-05
1fxk_C	133	Crystal Structure Of Archaeal Prefoldin (gimc) Leng		3e-05

>pdb|2ZDI|C Chain C, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii Ot3 Length = 151

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 27  EVNLLQDSLNNIRTATSRLESASTALHDLS-LRPQGAKMLVPLTASLYVPGTLDDARKVL 85
           +  +L  +L  +  A + +++    L +L  +  +  ++LVP+ A  ++ G + D    +
Sbjct: 24  QAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAI 83
Query: 86  VDIGTGYFVEKTMDEGKDYCERKI 109
           V +G+GY VE+++DE   + E+++
Sbjct: 84  VSVGSGYAVERSIDEAISFLEKRL 107

>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (gimc) Length = 133

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 27  EVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLV 86
           +V L+Q  +  +R   S LE     L D+  +  G++ LVP+ A  ++   L D  +V++
Sbjct: 16  QVELIQQQMEAVRATISELEILEKTLSDIQGKD-GSETLVPVGAGSFIKAELKDTSEVIM 74
Query: 87  DIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121
            +G G  ++K  ++  +  + + N L+S   ++ E
Sbjct: 75  SVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGE 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	9e-28
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	7e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii} Length = 151

 Score = 99.7 bits (248), Expect = 9e-28
 Identities = 26/142 (18%), Positives = 62/142 (43%), Gaps = 1/142 (0%)

Query: 9   MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS-LRPQGAKMLVP 67
                +E+L    +    +  +L  +L  +  A + +++    L +L  +  +  ++LVP
Sbjct: 6   QNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVP 65

Query: 68  LTASLYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKK 127
           + A  ++ G + D    +V +G+GY VE+++DE   + E+++        +      + +
Sbjct: 66  IGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELE 125

Query: 128 TISDEAAVILQAKLKQLAPASS 149
               E A   Q   ++ +  S 
Sbjct: 126 KRIGEVARKAQEVQQKQSMTSF 147

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 Length = 133

 Score = 96.9 bits (241), Expect = 7e-27
 Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 13  SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASL 72
           ++ ++ A       +V L+Q  +  +R   S LE     L D+  +  G++ LVP+ A  
Sbjct: 2   ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGK-DGSETLVPVGAGS 60

Query: 73  YVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDE 132
           ++   L D  +V++ +G G  ++K  ++  +  + + N L+S   ++ E       I  +
Sbjct: 61  FIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMK 120

Query: 133 AAVILQAKLKQLA 145
            +   +  L  +A
Sbjct: 121 LSPQAEELLAAVA 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 7e-07
 Identities = 26/137 (18%), Positives = 41/137 (29%), Gaps = 35/137 (25%)

Query: 14  VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLY 73
           +E L+ +  Q D       D  +NI+    R+ S    L  L                L 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKSKPYEN-------CLL 248

Query: 74  VPGTLDDAR--KVLVDIGTGYFVEKTMDEGKDYCERKINLL----KSNFDQLIEVATKKK 127
           V   L + +  K               +     C  KI LL    K   D L    T   
Sbjct: 249 V---LLNVQNAKAW----------NAFNLS---C--KI-LLTTRFKQVTDFLSAATTTHI 289

Query: 128 TISDEAAVILQAKLKQL 144
           ++   +  +   ++K L
Sbjct: 290 SLDHHSMTLTPDEVKSL 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	100.0
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	100.0
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	99.25
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	99.1
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	97.14
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	97.1
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	86.89
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	86.43
3rrk_A	357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	84.97
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	84.5
3aei_A	99	Prefoldin beta subunit 2; double helix, coiled coi	83.78
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	80.43
2nrj_A	346	HBL B protein; enterotoxin, hemolysis, transmembra	80.31

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=100.00  E-value=1.7e-33  Score=204.31  Aligned_cols=131  Identities=21%  Similarity=0.340  Sum_probs=126.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY   92 (150)
Q Consensus        13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~   92 (150)
                      .+++|...+++++.+++.+++++..|+..+++|..++++|+.|+. +.+.+++||||+|+||||+|+++++|+||||+||
T Consensus         2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~-~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~   80 (133)
T 1fxk_C            2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG-KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGV   80 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCE
Confidence            489999999999999999999999999999999999999999986 5688999999999999999999999999999999


Q ss_pred             eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977           93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL  144 (150)
Q Consensus        93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~  144 (150)
                      |||+|.++|++||++|++.+++.++++.+.+.+++.+++.+...|++.+++.
T Consensus        81 ~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~~  132 (133)
T 1fxk_C           81 AIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV  132 (133)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999988653

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.1e-31  Score=199.00  Aligned_cols=134  Identities=17%  Similarity=0.316  Sum_probs=124.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEE
Q 031977           11 KMSVEQLKAIKEQTDLEVNLLQDSLNNI---RTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVD   87 (150)
Q Consensus        11 ~l~~~qL~~~~~ql~~e~~~l~~~~~~L---~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~   87 (150)
                      +-.+++|..++++++.+++.|++++..|   ...+.++..+++.|+.++.  ++.+++||||+|+||||+|+++++|+||
T Consensus         8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~--~~~~ilvplg~~~yv~g~i~~~~~V~v~   85 (151)
T 2zdi_C            8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE--EKPEILVPIGAGSFLKGVIVDKNNAIVS   85 (151)
T ss_dssp             TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--SSCEEEEECSSSCEEEEECSCTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCceEEEEcCCCeEEEEEECCCCEEEEE
Confidence            4458999999999999999999999999   7777777777777777763  5789999999999999999999999999


Q ss_pred             ccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 031977           88 IGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAP  146 (150)
Q Consensus        88 lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~~  146 (150)
                      ||+|||||+|.++|++||++|++.+++.++.+.+.+.+++.+++.+...|++.+++.+.
T Consensus        86 lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~  144 (151)
T 2zdi_C           86 VGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSM  144 (151)
T ss_dssp             EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred             eCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987765

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=99.25  E-value=6.5e-10  Score=77.85  Aligned_cols=107  Identities=16%  Similarity=0.181  Sum_probs=97.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY   92 (150)
Q Consensus        13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~   92 (150)
                      ..+++..-.+.+.++++.+..++..+.....++..+++.|+.+++   +..|+.++|                     |+
T Consensus         7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~---d~~vy~~iG---------------------~v   62 (117)
T 2zqm_A            7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPD---DAVVYKTVG---------------------TL   62 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT---TCCEEEEET---------------------TE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CcHhHHHhh---------------------HH
Confidence            467888888999999999999999999999999999999999874   456777777                     99


Q ss_pred             eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031977           93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQ  143 (150)
Q Consensus        93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~  143 (150)
                      ||+.|.++|...+++|++.++..++.+.+.+..+...+..+...|+.++++
T Consensus        63 fv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~  113 (117)
T 2zqm_A           63 IVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP  113 (117)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999988753

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=99.10  E-value=5.3e-09  Score=72.11  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=94.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY   92 (150)
Q Consensus        13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~   92 (150)
                      .++++..-.+++.++++.+..++..+.....++..+.+.|+.+++   +..|+.++|                     |+
T Consensus         2 ~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~---d~~vy~~iG---------------------~v   57 (107)
T 1fxk_A            2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAAD---DAEVYKSSG---------------------NI   57 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT---TCCEEEEET---------------------TE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CchHHHHHh---------------------HH
Confidence            367888888999999999999999999999999999999999874   456788887                     89


Q ss_pred             eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK  140 (150)
Q Consensus        93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~  140 (150)
                      ||+.|.++|...+++|++.++..++.+.+.+..+...+..+...|+.+
T Consensus        58 fv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~  105 (107)
T 1fxk_A           58 LIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA  105 (107)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998888754

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=97.14  E-value=0.0024  Score=46.23  Aligned_cols=101  Identities=17%  Similarity=0.268  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCceeee
Q 031977           23 QTDLEVNLLQDSLNNIRTATSRL-------ESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYFVE   95 (150)
Q Consensus        23 ql~~e~~~l~~~~~~L~~~~~e~-------~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~vE   95 (150)
                      ++.+..+.++..+..|...+..+       .++.++++.|..          +..         ++..|+|++|+|+||.
T Consensus        13 ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~----------l~~---------~~~~ilvplg~~~yv~   73 (151)
T 2zdi_C           13 KLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKK----------IEE---------EKPEILVPIGAGSFLK   73 (151)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------CCC---------SSCEEEEECSSSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccc---------CCceEEEEcCCCeEEE
Confidence            33444445666666666665555       344445555431          111         4567888888888888


Q ss_pred             cCHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           96 KTMDEGK-------------DYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLK  142 (150)
Q Consensus        96 ~~~~eA~-------------~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~  142 (150)
                      -.+++..             .-++.=++++++.++.+...+..+...+..+...+.....
T Consensus        74 g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~  133 (151)
T 2zdi_C           74 GVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVAR  133 (151)
T ss_dssp             EECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             EEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776543             2356677778888888888888888877777777655443

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=97.10  E-value=0.0075  Score=42.51  Aligned_cols=108  Identities=10%  Similarity=0.202  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccC----------CCCCceEEEecCCceeEeEEEcCCC
Q 031977           15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST--ALHDLSL----------RPQGAKMLVPLTASLYVPGTLDDAR   82 (150)
Q Consensus        15 ~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e--~l~~L~~----------~~~~~eilvplg~~~yv~g~i~~~~   82 (150)
                      +++....+.+.+.++.+...+..+..++..+....+  ..+.+-+          -....+++|++|.|+||.-.+.+.-
T Consensus        11 q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~   90 (133)
T 1fxk_C           11 NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAM   90 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHH
Confidence            455555566666666666666666666655554331  1111100          0123467777777777777766533


Q ss_pred             eEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           83 KVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAV  135 (150)
Q Consensus        83 ~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~  135 (150)
                      .             -+++=+++++++++.+++.+..+...+..+...+..+.+
T Consensus        91 ~-------------~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~  130 (133)
T 1fxk_C           91 E-------------SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA  130 (133)
T ss_dssp             H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2             234556677777777777777777777777766665543

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=86.89  E-value=3  Score=27.21  Aligned_cols=41  Identities=20%  Similarity=0.325  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD   54 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~   54 (150)
                      .+||..|+..+..++..-...|..+...+.++...+.-|+.
T Consensus        39 kEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~   79 (84)
T 1gmj_A           39 KEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ   79 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            57899999999999999999999988888887776666543

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=86.43  E-value=2  Score=24.41  Aligned_cols=37  Identities=19%  Similarity=0.421  Sum_probs=32.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA   48 (150)
Q Consensus        12 l~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~   48 (150)
                      +|-++|.+-.+.++.|++.-.+.|..|+..+.++.++
T Consensus         2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~   38 (42)
T 2l5g_B            2 LSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEE   38 (42)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567899999999999999999999999999888765

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}

Probab=84.97  E-value=13  Score=29.52  Aligned_cols=117  Identities=11%  Similarity=0.075  Sum_probs=75.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcc-CCCC-CceE----EEe-------c-------C
Q 031977           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA---STALHDLS-LRPQ-GAKM----LVP-------L-------T   69 (150)
Q Consensus        13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~---~e~l~~L~-~~~~-~~ei----lvp-------l-------g   69 (150)
                      +++++......+..++..+..++..|+..+.++...   ++.|..+. .-+. ..--    .||       +       +
T Consensus        93 ~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~ld~~~~~g~~~g~ip~~~~~~~~~~~l~~~~  172 (357)
T 3rrk_A           93 SLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHGLDESPRLGVIPFLVAKPEELEAVRKALQEAL  172 (357)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTCTTEEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccCCccceeeeeeEEecChhhHHHHHHHHHHhc
Confidence            588898889999999999999999999999999999   77777544 2110 1111    232       1       1


Q ss_pred             CceeEe-EEEcCCCeEEEEccC----------------c-eeee-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           70 ASLYVP-GTLDDARKVLVDIGT----------------G-YFVE-----KTMDEGKDYCERKINLLKSNFDQLIEVATKK  126 (150)
Q Consensus        70 ~~~yv~-g~i~~~~~VlV~lG~----------------g-~~vE-----~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~  126 (150)
                      .++|+. ..-.....++|=++.                . |-+.     .+..++..-++.|+..++..++.+...+..+
T Consensus       173 ~~~~~~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~  252 (357)
T 3rrk_A          173 ADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARL  252 (357)
T ss_dssp             TTSCEEEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222 111122222222221                1 1111     2677888899999999999999998888888


Q ss_pred             HHH
Q 031977          127 KTI  129 (150)
Q Consensus       127 ~~~  129 (150)
                      ...
T Consensus       253 ~~~  255 (357)
T 3rrk_A          253 SRE  255 (357)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            777

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=84.50  E-value=5.6  Score=25.41  Aligned_cols=51  Identities=12%  Similarity=0.238  Sum_probs=41.6

Q ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031977           95 EKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLA  145 (150)
Q Consensus        95 E~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~~  145 (150)
                      +.+.++-+.-|+-|+.+.+..++.++..+..-..++..+...++.......
T Consensus         9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~   59 (78)
T 3efg_A            9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG   59 (78)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677788899999999999999999999999999998888877766543

>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}

Probab=83.78  E-value=6.8  Score=25.34  Aligned_cols=43  Identities=21%  Similarity=0.198  Sum_probs=33.1

Q ss_pred             CceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           90 TGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDE  132 (150)
Q Consensus        90 ~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~  132 (150)
                      ++..||.|.++|++.++|---..+..++++.+.-.++-..+..
T Consensus        51 ~dllveitkdeaiehier~rl~ykreie~l~~~ekeime~ls~   93 (99)
T 3aei_A           51 SDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEIMEELSK   93 (99)
T ss_dssp             TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678999999999999998888888888777665555544443

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=80.43  E-value=10  Score=25.11  Aligned_cols=98  Identities=15%  Similarity=0.203  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF   93 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~~   93 (150)
                      +..+....+.+..++..|...+..+...+..+...+.-++.   .  +.  .=|+-                   |..+.
T Consensus         5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~---~--g~--~CPvC-------------------gs~l~   58 (112)
T 1l8d_A            5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK---A--KG--KCPVC-------------------GRELT   58 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---C--SE--ECTTT-------------------CCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---C--CC--CCCCC-------------------CCcCC
Confidence            45556666777777777877777777777777666554422   0  10  01111                   22222


Q ss_pred             eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           94 VEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQ  138 (150)
Q Consensus        94 vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~  138 (150)
                      - -...+.++.+..++..+...+..+...+..+...+..+...+.
T Consensus        59 ~-~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~  102 (112)
T 1l8d_A           59 D-EHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK  102 (112)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1123456667777777777777777777777777777766665

>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2

Probab=80.31  E-value=18  Score=29.18  Aligned_cols=56  Identities=18%  Similarity=0.085  Sum_probs=28.8

Q ss_pred             EEccCceeeecCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           86 VDIGTGYFVEKTMDEGKDYCERKINLLKSNF---DQLIEVATKKKTISDEAAVILQAKLK  142 (150)
Q Consensus        86 V~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~---~~l~~~l~~~~~~~~~v~~~i~~~~~  142 (150)
                      +.++.|.+++.-..+.. -+.++++.+++.+   ..+...+..+...++.+...|.....
T Consensus       213 ~~i~Ggi~a~~a~k~~~-~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~  271 (346)
T 2nrj_A          213 LPIIGGIIVGVARDNLG-KLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAIN  271 (346)
T ss_dssp             EEETTTEEEEEEGGGHH-HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667665443333 2445555554443   33444555556666666665555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1fxkc_	133	a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Met	2e-20

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 133

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 79.2 bits (195), Expect = 2e-20
 Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 13  SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASL 72
           ++ ++ A       +V L+Q  +  +R   S LE     L D+  +  G++ LVP+ A  
Sbjct: 2   ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGK-DGSETLVPVGAGS 60

Query: 73  YVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDE 132
           ++   L D  +V++ +G G  ++K  ++  +  + + N L+S   ++ E       I  +
Sbjct: 61  FIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMK 120

Query: 133 AAVILQAKLKQLA 145
            +   +  L  +A
Sbjct: 121 LSPQAEELLAAVA 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	100.0
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	98.62
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	97.77

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=1.5e-31  Score=192.18  Aligned_cols=131  Identities=21%  Similarity=0.340  Sum_probs=126.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY   92 (150)
Q Consensus        13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~   92 (150)
                      ++++|....+.++++++.|++++..|+..+.+|..++++|+.|+. +.+.++|||+|+|+|+||+|.++++|+||||+||
T Consensus         2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~-~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~   80 (133)
T d1fxkc_           2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG-KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGV   80 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCeEEEEcCCceEEEEEecCCCceEEEecCCe
Confidence            689999999999999999999999999999999999999999985 5678999999999999999999999999999999


Q ss_pred             eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031977           93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL  144 (150)
Q Consensus        93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~~~~~~  144 (150)
                      |||+|+++|++|+++|++.+++.++++.+.+..++.++..+...+++.++++
T Consensus        81 ~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~  132 (133)
T d1fxkc_          81 AIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV  132 (133)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999988764

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.62  E-value=2.8e-06  Score=57.05  Aligned_cols=103  Identities=14%  Similarity=0.111  Sum_probs=89.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 031977           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY   92 (150)
Q Consensus        13 ~~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~L~~~~~~~eilvplg~~~yv~g~i~~~~~VlV~lG~g~   92 (150)
                      +++++..-.++++++++.+..++.+|.....++..+++.|+.+++   +..+                    +=.+| |+
T Consensus         2 ~lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~---d~~v--------------------yk~vG-~v   57 (107)
T d1fxka_           2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAAD---DAEV--------------------YKSSG-NI   57 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT---TCCE--------------------EEEET-TE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---ccHH--------------------HHHhc-ch
Confidence            467888889999999999999999999999999999999998874   2222                    22333 68


Q ss_pred             eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           93 FVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQA  139 (150)
Q Consensus        93 ~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i~~  139 (150)
                      ||+.|.++|..-++.|++.++..++.+.+.+..+...+..+...|+.
T Consensus        58 Lv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~  104 (107)
T d1fxka_          58 LIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998887764

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.77  E-value=0.00046  Score=47.08  Aligned_cols=111  Identities=9%  Similarity=0.197  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cc--CC-------CCCceEEEecCCceeEeEEEcCC
Q 031977           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD---LS--LR-------PQGAKMLVPLTASLYVPGTLDDA   81 (150)
Q Consensus        14 ~~qL~~~~~ql~~e~~~l~~~~~~L~~~~~e~~~~~e~l~~---L~--~~-------~~~~eilvplg~~~yv~g~i~~~   81 (150)
                      ++.|....+.+.+++..++..+..+...+..+....+.-..   ++  .+       ....+++|++|+|+||.=.+.+.
T Consensus        10 ~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE~~~~eA   89 (133)
T d1fxkc_          10 LNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDA   89 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeeeeecHHHH
Confidence            34566666777777788888887777766666554432211   11  00       23468888888888888887765


Q ss_pred             CeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031977           82 RKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVIL  137 (150)
Q Consensus        82 ~~VlV~lG~g~~vE~~~~eA~~~l~rr~~~l~~~~~~l~~~l~~~~~~~~~v~~~i  137 (150)
                      -+             -++.=++.+++.++.+.+.+..+...+..+...+..+.+.+
T Consensus        90 ~~-------------~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~  132 (133)
T d1fxkc_          90 ME-------------SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV  132 (133)
T ss_dssp             HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            32             14555778888888888888888888888888888776654