Citrus Sinensis ID: 031987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MALNHTLVLSSLLVLLLSLLSPLIIPIPKSKPTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccccccccccEEEEcccHHHHHHcccccccEEccccccEEEEEcccEEEEEEEEEEEEEEccccEEEEEccccEEEEccccEEEEEEcccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccHHcccEEEEccccHHHHHHcccccccEEccccccccEEEcccEEEEEEEEEEEEEccccccEEEEccccEEEEccccEEEEEEEccEEEEEEEcc
Coil and Loop (DISEMBL)
MALNHTLVLSSLLVLLLSLlspliipipkskpttprvskskpvmasttttTAATAEIFGvkieknppqsklselgvtswpkwgcppskfpwtftATETMYLLEGKVIVyvdgregsfeigtgdlvvfpkgmkITWDVIEAVNKHYSLEK
Flexible Loop (DISEMBL)
MALNHTLVLSSLLVLLLSLLSPLIipipkskpttprvskskpvmastttttaataeifgvkieknppqsKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK
Low Complexity Region (SEG)
MALNHtlvlssllvlllsllspliipipkskpttpRVSKSKPVMAStttttaataEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK
Disordered region (IsUnstruct)
****HTLVLSSLLVLLLSLLSPLIIPI***************************AEIFGVKI**********ELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKH*****
Disordered Region (DISOPRED)
*****TLVLSSLLVLLLSLLSPLIIP****************************************PQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE*
Disordered Region (DISEMBL)
MALNHTLVLSSLLVLLLSLLSPLIIPIPKS*******************TTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK
Disordered Region (DISPRO)
*ALNHTLVLSSLLVLLLSLLSPLIIPIPKS**********KPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALNHTLVLSSLLVLLLSLLSPLIIPIPKSKPTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
225459908	139	PREDICTED: uncharacterized protein LOC10	0.744	0.798	0.698	3e-40
297734729	117	unnamed protein product [Vitis vinifera]	0.724	0.923	0.699	7e-39
255574534	159	conserved hypothetical protein [Ricinus	0.624	0.584	0.827	6e-38
356530967	130	PREDICTED: uncharacterized protein LOC10	0.671	0.769	0.72	3e-34
326494464	135	predicted protein [Hordeum vulgare subsp	0.765	0.844	0.569	6e-34
357163733	135	PREDICTED: uncharacterized protein LOC10	0.758	0.837	0.598	6e-33
255557833	106	conserved hypothetical protein [Ricinus	0.711	1.0	0.650	6e-33
351722508	142	uncharacterized protein LOC100499968 [Gl	0.805	0.845	0.569	7e-33
116778702	169	unknown [Picea sitchensis] gi|224284992|	0.617	0.544	0.706	7e-33
21553516	136	unknown [Arabidopsis thaliana]	0.838	0.919	0.544	1e-32

>gi|225459908|ref|XP_002263897.1| PREDICTED: uncharacterized protein LOC100256915 [Vitis vinifera]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 90/116 (77%), Gaps = 5/116 (4%)

Query: 34  TPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTF 93
           T  ++K  P  AST     A  EIFGVKI +NPPQ+ L++LGVTSW KWGC PSKFPWTF
Sbjct: 29  TSNMTKPNPQEAST-----AIIEIFGVKIHRNPPQATLTDLGVTSWKKWGCSPSKFPWTF 83

Query: 94  TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK 149
            A ETMYLLEGKV VY DG +G FEIG GDLV FPKGMK+TWDV EA+NKHYSLEK
Sbjct: 84  EAKETMYLLEGKVKVYCDGHDGFFEIGAGDLVEFPKGMKVTWDVTEALNKHYSLEK 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734729|emb|CBI16963.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 88/113 (77%), Gaps = 5/113 (4%)

Query: 37  VSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTAT 96
           ++K  P  AST     A  EIFGVKI +NPPQ+ L++LGVTSW KWGC PSKFPWTF A 
Sbjct: 1   MTKPNPQEAST-----AIIEIFGVKIHRNPPQATLTDLGVTSWKKWGCSPSKFPWTFEAK 55

Query: 97  ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK 149
           ETMYLLEGKV VY DG +G FEIG GDLV FPKGMK+TWDV EA+NKHYSLE 
Sbjct: 56  ETMYLLEGKVKVYCDGHDGFFEIGAGDLVEFPKGMKVTWDVTEALNKHYSLEN 108

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574534|ref|XP_002528178.1| conserved hypothetical protein [Ricinus communis] gi|223532390|gb|EEF34185.1| conserved hypothetical protein [Ricinus communis]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/93 (82%), Positives = 81/93 (87%)

Query: 57  IFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGS 116
           IFGVKIEKNP QSKL ELGVT+WPKW   PSK PWTF  TET+YLLEGKV V VDG EGS
Sbjct: 67  IFGVKIEKNPSQSKLDELGVTTWPKWSGQPSKIPWTFKTTETIYLLEGKVKVSVDGYEGS 126

Query: 117 FEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK 149
           FEIG GDLVVFPKGMKITWDV+EAV+KHYSLEK
Sbjct: 127 FEIGAGDLVVFPKGMKITWDVLEAVSKHYSLEK 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530967|ref|XP_003534050.1| PREDICTED: uncharacterized protein LOC100807654 [Glycine max]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 81/100 (81%)

Query: 50  TTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVY 109
           T   T E+FGVKIEKNPPQSKL+ELGV++W KW   P+K PW+F   ETMYLLEGKV V 
Sbjct: 31  TAMKTYEVFGVKIEKNPPQSKLNELGVSTWSKWEGGPAKIPWSFKEEETMYLLEGKVRVT 90

Query: 110 VDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK 149
           V+G  GSFEIG GDLVVFPKGM ITW+VIEAV KHYSL+K
Sbjct: 91  VEGSVGSFEIGGGDLVVFPKGMNITWEVIEAVKKHYSLKK 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326494464|dbj|BAJ90501.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 82/123 (66%), Gaps = 9/123 (7%)

Query: 26  PIPKSKPTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCP 85
           P P+ +    RV  S   MA+         E  GV++E+NP +S+LSELGV  WPKWGC 
Sbjct: 22  PAPRGRFVAARVRASAEAMAT---------EKLGVRVERNPAESRLSELGVRQWPKWGCE 72

Query: 86  PSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHY 145
            SKFPWT++A ET YLL+GKV VY DG EG  EI  GDLVVFPKGM  TWDV EAV+KHY
Sbjct: 73  KSKFPWTYSAKETCYLLQGKVKVYPDGEEGFVEIAAGDLVVFPKGMSCTWDVTEAVDKHY 132

Query: 146 SLE 148
             E
Sbjct: 133 KFE 135

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357163733|ref|XP_003579828.1| PREDICTED: uncharacterized protein LOC100825165 [Brachypodium distachyon]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 82/117 (70%), Gaps = 4/117 (3%)

Query: 32  PTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPW 91
           PT  R + ++ V AS     A   E  GV++E NPP+S+LSELGV  WPKWGC  SKFPW
Sbjct: 23  PTRGRFAAAR-VRASAE---AMATEKLGVRVETNPPESRLSELGVRQWPKWGCEQSKFPW 78

Query: 92  TFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE 148
           T++A ET YLL+GKV VY DG +G  EI  GDLVVFPKGM  TWDV EAV+KHY  E
Sbjct: 79  TYSAKETCYLLQGKVKVYPDGEDGFVEIAAGDLVVFPKGMSCTWDVEEAVDKHYKFE 135

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557833|ref|XP_002519946.1| conserved hypothetical protein [Ricinus communis] gi|223540992|gb|EEF42550.1| conserved hypothetical protein [Ricinus communis]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 79/106 (74%)

Query: 43  VMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLL 102
           + A T    A T E  G+KI +NPP+SKL++LGV SWPKWGCPPSKFPWT++A ET YLL
Sbjct: 1   MAAPTVKAEAMTIEKSGIKIVRNPPESKLTDLGVRSWPKWGCPPSKFPWTYSAKETCYLL 60

Query: 103 EGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE 148
           EGKV VY DG E   EIG GDLVVFPKGM  TWDV   V+KHY+ E
Sbjct: 61  EGKVKVYPDGIEEPIEIGAGDLVVFPKGMSCTWDVSVGVDKHYNFE 106

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722508|ref|NP_001234944.1| uncharacterized protein LOC100499968 [Glycine max] gi|255628091|gb|ACU14390.1| unknown [Glycine max]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 85/123 (69%), Gaps = 3/123 (2%)

Query: 27  IPKSKPTTPRVSKSKPVMASTTTTTAATA-EIFGVKIEKNPPQSKLSELGVTSWPKWGCP 85
           +P S+   PR  + +  +A+T   T  T  E  G+KIE+NPP+SKL++LGV  WPKWGCP
Sbjct: 22  VPASRSGAPR--RRRVHLATTRAETMTTVIEKLGIKIERNPPESKLTQLGVRQWPKWGCP 79

Query: 86  PSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHY 145
           PSKFPWT+ A ET YLLEGKV V+  G   S EI  GDLVVFPKGM  TWDV   V+KHY
Sbjct: 80  PSKFPWTYEAKETCYLLEGKVKVFPSGSNESVEIAAGDLVVFPKGMSCTWDVSVGVDKHY 139

Query: 146 SLE 148
           + E
Sbjct: 140 NFE 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116778702|gb|ABK20966.1| unknown [Picea sitchensis] gi|224284992|gb|ACN40225.1| unknown [Picea sitchensis]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 73/92 (79%)

Query: 56  EIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREG 115
           E  G++IE NP + +LSEL V SWPKWGCPPSKFPWT+TATET YLLEG+V VY DG   
Sbjct: 77  ENMGIQIESNPAEGRLSELKVRSWPKWGCPPSKFPWTYTATETCYLLEGRVKVYPDGYND 136

Query: 116 SFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL 147
             EIG GDLVVFPKGMK TW+V EAV+KHYS 
Sbjct: 137 YVEIGPGDLVVFPKGMKCTWEVSEAVDKHYSF 168

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553516|gb|AAM62609.1| unknown [Arabidopsis thaliana]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 82/125 (65%)

Query: 24  IIPIPKSKPTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWG 83
           I P    +   P  S+    MA+     +   E  G+ IEKNPP+SKL++LGV SWPKWG
Sbjct: 12  INPYLTRRSNKPYNSRRPSSMAAAIRAESMATEKLGITIEKNPPESKLTQLGVRSWPKWG 71

Query: 84  CPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNK 143
           CPPSKFPWT++A ET YLL+GKV VY +G +   EI  GD VVFPKGM  TWDV  AV+K
Sbjct: 72  CPPSKFPWTYSAKETCYLLQGKVKVYPNGSDEGVEIEAGDFVVFPKGMSCTWDVSVAVDK 131

Query: 144 HYSLE 148
           HY  E
Sbjct: 132 HYQFE 136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2122734	134	AT4G10300 "AT4G10300" [Arabido	0.624	0.694	0.666	6e-32
TAIR|locus:2122809	140	AT4G10280 "AT4G10280" [Arabido	0.731	0.778	0.535	3.5e-27
UNIPROTKB|Q60B25	91	MCA0659 "Putative uncharacteri	0.577	0.945	0.551	1.3e-22
TAIR|locus:2103095	96	AT3G04300 "AT3G04300" [Arabido	0.597	0.927	0.494	1e-20
TAIR|locus:2122819	120	AT4G10290 "AT4G10290" [Arabido	0.624	0.775	0.520	1.2e-19
TAIR|locus:505006531	107	AT4G28703 "AT4G28703" [Arabido	0.563	0.785	0.473	5.8e-18
TAIR|locus:2045532	139	PTAC18 "AT2G32180" [Arabidopsi	0.516	0.553	0.337	5.2e-10
TAIR|locus:2046412	139	AT2G32650 "AT2G32650" [Arabido	0.516	0.553	0.337	5.2e-10
UNIPROTKB|Q720P1	147	LMOf2365_1197 "Putative unchar	0.315	0.319	0.367	0.00035
UNIPROTKB|Q88BC6	121	PSPTO_0091 "Uncharacterized pr	0.489	0.603	0.324	0.00035

TAIR|locus:2122734 AT4G10300 "AT4G10300" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 62/93 (66%), Positives = 72/93 (77%)

Query:    56 EIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREG 115
             E  G+ IEKNPP+SKL++LGV SWPKWGCPPSKFPWT++A ET YLL+GKV VY +G + 
Sbjct:    42 EKLGITIEKNPPESKLTQLGVRSWPKWGCPPSKFPWTYSAKETCYLLQGKVKVYPNGSDE 101

Query:   116 SFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE 148
               EI  GD VVFPKGM  TWDV  AV+KHY  E
Sbjct:   102 GVEIEAGDFVVFPKGMSCTWDVSVAVDKHYQFE 134

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TAIR|locus:2122809 AT4G10280 "AT4G10280" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 60/112 (53%), Positives = 73/112 (65%)

Query:    41 KPVMASXXXXXXXXXEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMY 100
             K  + S         EI GVKI +    +KL++LGV SWPKW   PSKFPW F  TET+Y
Sbjct:    29 KEAIVSVSSDSEIPTEIHGVKILRQASDTKLAQLGVASWPKWEGAPSKFPWEFKKTETIY 88

Query:   101 LLEGKVIVYVDG---REGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK 149
              +EGKV V VDG    E +FEIG GD+VVFPK MK+ W++ EAV K YSLE+
Sbjct:    89 FMEGKVKVNVDGYDEEEETFEIGKGDVVVFPKDMKVVWEITEAVKKQYSLEE 140

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

UNIPROTKB|Q60B25 MCA0659 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 48/87 (55%), Positives = 57/87 (65%)

Query:    60 VKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEI 119
             +KIE NPP+++L ELGV  WP W C  S FPWT+  +ET Y+LEG+V V   G E    I
Sbjct:     4 IKIENNPPETRLGELGVRRWPTWSCGVSSFPWTYDESETCYILEGEVTVTPQGGE-PVRI 62

Query:   120 GTGDLVVFPKGMKITWDVIEAVNKHYS 146
             G GDLV FP GM  TWDV   V KHY+
Sbjct:    63 GKGDLVTFPPGMSCTWDVHVPVKKHYT 89

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103095 AT3G04300 "AT3G04300" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 44/89 (49%), Positives = 54/89 (60%)

Query:    60 VKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEI 119
             + IE NP   +LS+LGV SWPKW C P K+   F   ET YL++GKV VY  G     E 
Sbjct:     3 IVIENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKGSSEFVEF 62

Query:   120 GTGDLVVFPKGMKITWDVIEAVNKHYSLE 148
             G GDLV  PKG+  TWDV   ++KHY  +
Sbjct:    63 GAGDLVTIPKGLSCTWDVSLFIDKHYKFD 91

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2122819 AT4G10290 "AT4G10290" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 50/96 (52%), Positives = 61/96 (63%)

Query:    56 EIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDG--R 113
             EI GVK+ +    +KL+ELGVTSW  W   P KFPW F  TETMY +EGK+ V V+   +
Sbjct:    16 EIHGVKVMRQTSDAKLAELGVTSWQLWESMPRKFPWKFKKTETMYFVEGKLKVKVEDHHK 75

Query:   114 EG-SFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE 148
             EG + E   GDLVVFP+ M +  DVIE V K Y  E
Sbjct:    76 EGEALEFVAGDLVVFPQDMNVFVDVIEDVKKRYYRE 111

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006531 AT4G28703 "AT4G28703" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 44/93 (47%), Positives = 55/93 (59%)

Query:    62 IEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYV--------DGR 113
             +E+NP Q++L EL   SWPKWGC P K+   + A E  Y+L GKV VY         D  
Sbjct:    10 VEQNPSQARLDELKFKSWPKWGCSPGKYHLKYEAEEICYILRGKVKVYPKPPPSSSSDAE 69

Query:   114 -EGSFEIGTGDLVVFPKGMKITWDVIEAVNKHY 145
              E   E G GD+V FPKG+  TWDV  +V+KHY
Sbjct:    70 VEWCVEFGAGDIVTFPKGLSCTWDVSLSVDKHY 102

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2045532 PTAC18 "AT2G32180" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 26/77 (33%), Positives = 44/77 (57%)

Query:    56 EIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREG 115
             E++ VK+E+   Q +L ELGV+ W  W     K PW +   + +Y+ +G+V V  +G + 
Sbjct:    42 ELYNVKVERKVSQKRLEELGVSRWSVWKTGKCKLPWDWQVDQLVYIEQGEVRVVPEGSKR 101

Query:   116 SFEIGTGDLVVFPKGMK 132
               +   GDLV +PK ++
Sbjct:   102 YMQFLAGDLVRYPKWLE 118

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

TAIR|locus:2046412 AT2G32650 "AT2G32650" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 26/77 (33%), Positives = 44/77 (57%)

Query:    56 EIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREG 115
             E++ VK+E+   Q +L ELGV+ W  W     K PW +   + +Y+ +G+V V  +G + 
Sbjct:    42 ELYNVKVERKVSQKRLEELGVSRWSVWKTGKCKLPWDWQVDQLVYIEQGEVRVVPEGSKR 101

Query:   116 SFEIGTGDLVVFPKGMK 132
               +   GDLV +PK ++
Sbjct:   102 YMQFLAGDLVRYPKWLE 118

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q720P1 LMOf2365_1197 "Putative uncharacterized protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query:    89 FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDV 137
             F W     E  Y++EG++ V +DGR  S   G G+++  PKG +I + V
Sbjct:    84 FDWFLDYDEVDYIIEGRLDVVIDGRTVS--AGPGEIIFIPKGSQIKFSV 130

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q88BC6 PSPTO_0091 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 24/74 (32%), Positives = 35/74 (47%)

Query:    72 SELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM 131
             S  G  S   W   P ++   +T  E   +++G V V  D +  +  +  GD  V P G 
Sbjct:    41 SPCGQMSAGVWNGEPGQWQVNYTEHEYCEIVQG-VSVLRDEQGTAKTLRAGDRFVIPAGF 99

Query:   132 KITWDVIEAVNKHY 145
             K TW+V+EA  K Y
Sbjct:   100 KGTWEVLEACRKIY 113


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      149       110   0.00091  102 3  11 22  0.49    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  126 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.31u 0.14s 10.45t   Elapsed:  00:00:01
  Total cpu time:  10.31u 0.14s 10.45t   Elapsed:  00:00:01
  Start:  Fri May 10 10:09:03 2013   End:  Fri May 10 10:09:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
pfam05899	74	pfam05899, Cupin_3, Protein of unknown function (D	7e-28
COG3450	116	COG3450, COG3450, Predicted enzyme of the cupin su	3e-18
COG4766	176	COG4766, EutQ, Ethanolamine utilization protein [A	2e-06
pfam06249	152	pfam06249, EutQ, Ethanolamine utilisation protein	5e-05
pfam07883	70	pfam07883, Cupin_2, Cupin domain	6e-05
COG0662	127	COG0662, {ManC}, Mannose-6-phosphate isomerase [Ca	0.002

>gnl|CDD|147835 pfam05899, Cupin_3, Protein of unknown function (DUF861)

 Score = 98.1 bits (245), Expect = 7e-28
 Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 71  LSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKG 130
           L   GV SW  W C P KF WT+   E  Y+L G+V V  +G E + E+  GDLVVFP G
Sbjct: 1   LGPDGVFSWGIWECTPGKFRWTYEEDEFCYILSGEVTVTPEGGE-TVELRAGDLVVFPAG 59

Query: 131 MKITWDVIEAVNKHY 145
              TW+V+E V KHY
Sbjct: 60  FTGTWEVLETVRKHY 74

This family consists of several proteins which seem to be specific to plants and bacteria. The function of this family is unknown. Length = 74

>gnl|CDD|225981 COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]

 Score = 74.7 bits (184), Expect = 3e-18
 Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 82  WGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV 141
           W C P KF  T+   E  ++LEG+V V  DG E   E+  GD  VFP G K TW+V+E V
Sbjct: 50  WECTPGKFRVTYDEDEFCHILEGRVEVTPDGGE-PVEVRAGDSFVFPAGFKGTWEVLETV 108

Query: 142 NKHYSL 147
            KHY +
Sbjct: 109 RKHYVI 114

Length = 116

>gnl|CDD|227107 COG4766, EutQ, Ethanolamine utilization protein [Amino acid transport and metabolism]

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 86  PSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDV 137
            + FPWT    E  Y+LEG++ V +DGR      G GD++  PKG  I +  
Sbjct: 109 NTTFPWTLNYDEIDYVLEGRLHVRIDGRTVI--AGAGDVIFIPKGSSIEFST 158

Length = 176

>gnl|CDD|114941 pfam06249, EutQ, Ethanolamine utilisation protein EutQ

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 89  FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDV 137
           FPWT    E  Y++EG++ V +DGR  S     GD++  PKG KI + V
Sbjct: 89  FPWTLNYDEIDYVIEGRLDVRIDGRTVS--AKAGDVIFIPKGSKIEFSV 135

The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear. Length = 152

>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 96  TETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM 131
            E  Y+LEG+  + VDG E    +  GD V FP G+
Sbjct: 19  EEFFYVLEGEGELTVDGEE--VVLKAGDSVYFPAGV 52

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). Length = 70

>gnl|CDD|223734 COG0662, {ManC}, Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 97  ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKG 130
           E  Y+LEG   V + G E   E+  GD V  P G
Sbjct: 59  EHWYVLEGTGKVTIGGEE--VEVKAGDSVYIPAG 90

Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
COG3450	116	Predicted enzyme of the cupin superfamily [General	99.94
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	99.9
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	99.5
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	99.34
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	99.31
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	98.95
COG3837	161	Uncharacterized conserved protein, contains double	98.95
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	98.86
PRK13290	125	ectC L-ectoine synthase; Reviewed	98.81
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.65
COG1917	131	Uncharacterized conserved protein, contains double	98.53
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.47
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.41
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	98.39
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.38
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.38
smart00835	146	Cupin_1 Cupin. This family represents the conserve	98.36
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.35
PRK11171	266	hypothetical protein; Provisional	98.34
PRK11171	266	hypothetical protein; Provisional	98.33
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.31
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.24
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.19
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.08
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.03
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	97.9
COG4297	163	Uncharacterized protein containing double-stranded	97.71
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	97.65
PRK13500	312	transcriptional activator RhaR; Provisional	97.6
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	97.59
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	97.58
PRK10579	94	hypothetical protein; Provisional	97.57
PRK13501	290	transcriptional activator RhaR; Provisional	97.56
PLN00212	493	glutelin; Provisional	97.55
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	97.53
PRK13502	282	transcriptional activator RhaR; Provisional	97.52
PRK13503	278	transcriptional activator RhaS; Provisional	97.38
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	97.36
COG3257	264	GlxB Uncharacterized protein, possibly involved in	97.33
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	97.27
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	97.26
PF12852	186	Cupin_6: Cupin	97.13
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	97.07
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	96.99
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	96.95
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	96.84
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	96.81
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	96.77
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	96.75
PLN02658	435	homogentisate 1,2-dioxygenase	96.56
KOG2107	179	consensus Uncharacterized conserved protein, conta	96.46
COG3123	94	Uncharacterized protein conserved in bacteria [Fun	96.38
PLN00212	493	glutelin; Provisional	96.17
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	96.17
COG1791	181	Uncharacterized conserved protein, contains double	96.06
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	96.03
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	95.85
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	95.76
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	95.61
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	95.33
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	95.31
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	95.17
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	95.1
PF14525	172	AraC_binding_2: AraC-binding-like domain	94.71
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	94.55
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	94.54
PRK15131	389	mannose-6-phosphate isomerase; Provisional	94.52
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	93.74
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	93.62
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	93.61
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	93.13
PLN02288	394	mannose-6-phosphate isomerase	93.08
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	91.78
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	91.28
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	91.1
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	90.75
PRK15186	291	AraC family transcriptional regulator; Provisional	90.49
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	89.6
PF06719	155	AraC_N: AraC-type transcriptional regulator N-term	88.59
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	88.29
PF04622	216	ERG2_Sigma1R: ERG2 and Sigma1 receptor like protei	88.12
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	88.06
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	88.04
COG3718	270	IolB Uncharacterized enzyme involved in inositol m	87.34
COG3257	264	GlxB Uncharacterized protein, possibly involved in	86.37
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	85.65

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=99.94  E-value=4.7e-26  Score=170.57  Aligned_cols=110  Identities=35%  Similarity=0.574  Sum_probs=89.9

Q ss_pred             ecCCCCCCCCcccCCCcccccccCCccccceeeeEEEeeCCChhhhhhcCCceeeeEecCCccccccCCCceEEEEEEeE
Q 031987           26 PIPKSKPTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGK  105 (149)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~ps~~~L~~lGv~~~giWe~~pg~f~~h~~~dE~~yVLEG~  105 (149)
                      +|++.+-..++...+.|+...++.+...++.++.            ...|...+|+|+|+||+|+++|+.+|+||||+|+
T Consensus         6 ~~~~~p~~~~~~~~~~p~~~i~G~p~~~t~~~~~------------~~dg~~~~GiWe~TpG~~r~~y~~~E~chil~G~   73 (116)
T COG3450           6 IIDTVPLEEPELGDPAPEPLILGDPSAATWNLYG------------APDGQVETGIWECTPGKFRVTYDEDEFCHILEGR   73 (116)
T ss_pred             eccCCccccccccccCCcccccCCccceehheee------------CCCCCeeEeEEEecCccceEEcccceEEEEEeeE
Confidence            4444444556666666666655555555444432            1257788999999999999999999999999999


Q ss_pred             EEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEec
Q 031987          106 VIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE  148 (149)
Q Consensus       106 v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~  148 (149)
                      ++++.|+| +.++++|||+++||+|+.++|+|.|++||+|++.
T Consensus        74 v~~T~d~G-e~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~~  115 (116)
T COG3450          74 VEVTPDGG-EPVEVRAGDSFVFPAGFKGTWEVLETVRKHYVIR  115 (116)
T ss_pred             EEEECCCC-eEEEEcCCCEEEECCCCeEEEEEeeeeEEEEEEe
Confidence            99999999 9999999999999999999999999999999974

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=99.90  E-value=8.9e-24  Score=145.58  Aligned_cols=72  Identities=39%  Similarity=0.751  Sum_probs=68.5

Q ss_pred             hcCCceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEE
Q 031987           73 ELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHY  145 (149)
Q Consensus        73 ~lGv~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Y  145 (149)
                      .+|..++|+|+|+||+++++++.+|++|||||+++++.++| ++++++|||+++||+|++++|++.+++||+|
T Consensus         3 ~~g~~~~g~w~~~pg~~~~~~~~~E~~~vleG~v~it~~~G-~~~~~~aGD~~~~p~G~~~~w~v~~~vrK~Y   74 (74)
T PF05899_consen    3 PDGVFSAGVWECTPGKFPWPYPEDEFFYVLEGEVTITDEDG-ETVTFKAGDAFFLPKGWTGTWEVREPVRKVY   74 (74)
T ss_dssp             CCTSEEEEEEEEECEEEEEEESSEEEEEEEEEEEEEEETTT-EEEEEETTEEEEE-TTEEEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEECCceeEeeCCCCEEEEEEEeEEEEEECCC-CEEEEcCCcEEEECCCCEEEEEECeEEEEcC
Confidence            46889999999999999999999999999999999999988 8999999999999999999999999999998

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=99.50  E-value=1.2e-13  Score=107.84  Aligned_cols=72  Identities=29%  Similarity=0.481  Sum_probs=62.6

Q ss_pred             CceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEecC
Q 031987           76 VTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK  149 (149)
Q Consensus        76 v~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~~  149 (149)
                      ...+|+.+.+.+.|+|++.+||+.|||||++++..+|+  ++..+|||+++||+|.+++|.+.+..|-+|+.-|
T Consensus        76 ~l~~Gf~~le~~~f~wtl~YDEi~~VlEG~L~i~~~G~--~~~A~~GDvi~iPkGs~I~fst~~~a~~~Yv~yP  147 (152)
T PF06249_consen   76 RLSAGFMELEKTSFPWTLTYDEIKYVLEGTLEISIDGQ--TVTAKPGDVIFIPKGSTITFSTPDYARFFYVTYP  147 (152)
T ss_dssp             SSEEEEEEEEEEEEEEE-SSEEEEEEEEEEEEEEETTE--EEEEETT-EEEE-TT-EEEEEEEEEEEEEEEEES
T ss_pred             ceeeEEEEEeCCCccEEeecceEEEEEEeEEEEEECCE--EEEEcCCcEEEECCCCEEEEecCCCEEEEEEECC
Confidence            45589988888899999999999999999999998876  9999999999999999999999999999998754

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=99.34  E-value=6.8e-12  Score=103.78  Aligned_cols=70  Identities=26%  Similarity=0.398  Sum_probs=64.1

Q ss_pred             CceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           76 VTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        76 v~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      ...+|+.+.+...|+|+++++|+.|||||+++++++|.  ++.++|||+++||+|..++|......|.+|++
T Consensus       156 ~m~aGf~~~~~~sf~wtl~~dEi~YVLEGe~~l~IdG~--t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~  225 (233)
T PRK15457        156 SMAAGFMQWENAFFPWTLNYDEIDMVLEGELHVRHEGE--TMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVA  225 (233)
T ss_pred             ceeeEEEEEecCccceeccceEEEEEEEeEEEEEECCE--EEEeCCCcEEEECCCCeEEecCCCCeeEEEEE
Confidence            45688888888999999999999999999999999876  99999999999999999999888888888875

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.31  E-value=1.1e-11  Score=97.55  Aligned_cols=71  Identities=30%  Similarity=0.529  Sum_probs=65.6

Q ss_pred             CCceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           75 GVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        75 Gv~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      +....|.-+..+..|+|+..+||+.|||||++.+..+|+  .+..+|||++++|||..+++.+....|..|+.
T Consensus        98 ~~l~aG~m~~~~~tf~wtl~yDe~d~VlEGrL~V~~~g~--tv~a~aGDvifiPKgssIefst~gea~flyvt  168 (176)
T COG4766          98 SRLGAGLMEMKNTTFPWTLNYDEIDYVLEGRLHVRIDGR--TVIAGAGDVIFIPKGSSIEFSTTGEAKFLYVT  168 (176)
T ss_pred             CccccceeeeccccCcceecccceeEEEeeeEEEEEcCC--eEecCCCcEEEecCCCeEEEeccceEEEEEEE
Confidence            445578888888899999999999999999999999999  99999999999999999999999999999975

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=98.95  E-value=7.2e-09  Score=67.96  Aligned_cols=60  Identities=25%  Similarity=0.313  Sum_probs=50.0

Q ss_pred             eeEecCCccc-ccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987           80 PKWGCPPSKF-PWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV  141 (149)
Q Consensus        80 giWe~~pg~f-~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v  141 (149)
                      |.|+..||.. ++|  ...+|++||++|++++..+|+  .+.+++||++++|+|..+.+.....-
T Consensus         1 ~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~   63 (71)
T PF07883_consen    1 GLVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE--RVELKPGDAIYIPPGVPHQVRNPGDE   63 (71)
T ss_dssp             EEEEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE--EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred             CEEEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE--EeEccCCEEEEECCCCeEEEEECCCC
Confidence            4677778874 344  344599999999999998877  99999999999999999999988653

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.95  E-value=3.6e-09  Score=83.28  Aligned_cols=71  Identities=27%  Similarity=0.339  Sum_probs=57.4

Q ss_pred             hhhhcCCceeeeEecCCcc----ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCC--cEEEEEEcCceEE
Q 031987           70 KLSELGVTSWPKWGCPPSK----FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKG--MKITWDVIEAVNK  143 (149)
Q Consensus        70 ~L~~lGv~~~giWe~~pg~----f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG--~~~tW~v~e~vrK  143 (149)
                      .|+++|+.-   =..+||.    +|||..+||++|||||+.++..+|+  .+.++|||++-||+|  .-|.+.....+--
T Consensus        38 Gl~~fGvn~---~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~--e~~lrpGD~~gFpAG~~~aHhliN~s~~~~  112 (161)
T COG3837          38 GLKRFGVNL---EIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG--ETRLRPGDSAGFPAGVGNAHHLINRSDVIL  112 (161)
T ss_pred             Chhhcccce---EEeCCCCccccccccccCceEEEEEcCceEEEECCe--eEEecCCceeeccCCCcceeEEeecCCceE
Confidence            456666543   4455665    4788899999999999999999999  899999999999999  7788887766555


Q ss_pred             EE
Q 031987          144 HY  145 (149)
Q Consensus       144 ~Y  145 (149)
                      .|
T Consensus       113 ~y  114 (161)
T COG3837         113 RY  114 (161)
T ss_pred             EE
Confidence            54

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.86  E-value=9.2e-09  Score=76.81  Aligned_cols=52  Identities=25%  Similarity=0.334  Sum_probs=47.1

Q ss_pred             ccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           87 SKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        87 g~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ..++.|++.||++|||||++.++.+|.  .+.+++||++++|+|..|.-+....
T Consensus        49 ~~~~~H~~~dE~~~Vl~G~g~v~~~~~--~~~v~~gd~~~iP~g~~H~~~N~G~  100 (127)
T COG0662          49 ISLHHHHHRDEHWYVLEGTGKVTIGGE--EVEVKAGDSVYIPAGTPHRVRNTGK  100 (127)
T ss_pred             cCcccccCcceEEEEEeeEEEEEECCE--EEEecCCCEEEECCCCcEEEEcCCC
Confidence            345667779999999999999999987  9999999999999999999998876

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=98.81  E-value=4.9e-08  Score=73.63  Aligned_cols=66  Identities=14%  Similarity=0.077  Sum_probs=53.3

Q ss_pred             EecCCccc-cccC-CCceEEEEEEeEEEEE-ECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEec
Q 031987           82 WGCPPSKF-PWTF-TATETMYLLEGKVIVY-VDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE  148 (149)
Q Consensus        82 We~~pg~f-~~h~-~~dE~~yVLEG~v~vt-~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~  148 (149)
                      +.-+||.. +.|+ +.+|++|||+|+++++ .+|+ +.+.++|||+++||+|..|.|+..++.+-..++.
T Consensus        40 ~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g-~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v~t  108 (125)
T PRK13290         40 TTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATG-EVHPIRPGTMYALDKHDRHYLRAGEDMRLVCVFN  108 (125)
T ss_pred             EEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCC-EEEEeCCCeEEEECCCCcEEEEcCCCEEEEEEEC
Confidence            55667743 3343 3579999999999999 6644 5999999999999999999999998888776654

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.65  E-value=2.3e-07  Score=72.70  Aligned_cols=63  Identities=13%  Similarity=0.246  Sum_probs=49.7

Q ss_pred             EecCCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEE
Q 031987           82 WGCPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYS  146 (149)
Q Consensus        82 We~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yv  146 (149)
                      +.-.|+..   ..|...+|++||++|+++++++|.  .+.+++||+++||.+..|.|....  +.+-..+
T Consensus       112 ~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~  179 (185)
T PRK09943        112 ETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIISA  179 (185)
T ss_pred             EEccCCCCcccccccCCcEEEEEEEeEEEEEECCE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence            44455543   234567999999999999999887  899999999999999999999964  3444433

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.53  E-value=6.1e-07  Score=66.36  Aligned_cols=60  Identities=27%  Similarity=0.532  Sum_probs=51.8

Q ss_pred             eeEecCCccc-cccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987           80 PKWGCPPSKF-PWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV  141 (149)
Q Consensus        80 giWe~~pg~f-~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v  141 (149)
                      ..+.-+||.. +||.+  .++++|||+|+++++.++  +.+++++||++++|+|..|.+...+.-
T Consensus        46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g--~~~~l~~Gd~i~ip~g~~H~~~a~~~~  108 (131)
T COG1917          46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG--EKKELKAGDVIIIPPGVVHGLKAVEDE  108 (131)
T ss_pred             EEEEECCCcccccccCCCcceEEEEEecEEEEEecC--CceEecCCCEEEECCCCeeeeccCCCC
Confidence            3577788876 67765  689999999999999994  599999999999999999999887665

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.47  E-value=4.3e-07  Score=72.77  Aligned_cols=54  Identities=19%  Similarity=0.357  Sum_probs=45.1

Q ss_pred             CCc-cccccC-CCceEEEEEEeEEEEEECCcc--eEEEEcCCcEEEEcCCcEEEEEEc
Q 031987           85 PPS-KFPWTF-TATETMYLLEGKVIVYVDGRE--GSFEIGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        85 ~pg-~f~~h~-~~dE~~yVLEG~v~vt~dgg~--~~~~i~aGD~v~~PkG~~~tW~v~  138 (149)
                      .|+ ++.||+ +.||+||+|+|++++.+.+++  ..+.+++||++++|+|+.|.+.-.
T Consensus        42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~   99 (177)
T PRK13264         42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQRE   99 (177)
T ss_pred             cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccC
Confidence            566 567886 589999999999999994332  488999999999999999999654

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.41  E-value=6.2e-07  Score=70.74  Aligned_cols=52  Identities=17%  Similarity=0.267  Sum_probs=43.3

Q ss_pred             cccccCC-CceEEEEEEeEEEEEECCcc--eEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           88 KFPWTFT-ATETMYLLEGKVIVYVDGRE--GSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        88 ~f~~h~~-~dE~~yVLEG~v~vt~dgg~--~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      +++||.+ .||+||+|+|++.+.+.+++  ..+.+++||++++|+|+.|.|.-.+
T Consensus        40 R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~   94 (159)
T TIGR03037        40 RTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPA   94 (159)
T ss_pred             CcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCC
Confidence            3568864 89999999999999775532  3799999999999999999997543

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=98.39  E-value=5.7e-06  Score=62.38  Aligned_cols=76  Identities=22%  Similarity=0.212  Sum_probs=53.7

Q ss_pred             hhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEE--CCc------ceEEE--EcCCcEEEEcCCcEEEEEE
Q 031987           71 LSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYV--DGR------EGSFE--IGTGDLVVFPKGMKITWDV  137 (149)
Q Consensus        71 L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~--dgg------~~~~~--i~aGD~v~~PkG~~~tW~v  137 (149)
                      +..++......-..+||..   +|| +.+|++||++|++++..  .++      .....  +++||++++|+|+.+.+..
T Consensus        28 ~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n  106 (144)
T PF00190_consen   28 LLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIIN  106 (144)
T ss_dssp             HHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEE
T ss_pred             eecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEc
Confidence            3344433444555578876   577 89999999999999654  221      12344  9999999999999999999


Q ss_pred             c--CceEEEEEe
Q 031987          138 I--EAVNKHYSL  147 (149)
Q Consensus       138 ~--e~vrK~Yvi  147 (149)
                      .  +....++.+
T Consensus       107 ~~~~~~~~~~~f  118 (144)
T PF00190_consen  107 DGDDEALVLIIF  118 (144)
T ss_dssp             CSSSSEEEEEEE
T ss_pred             CCCCCCEEEEEE
Confidence            9  567776665

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.38  E-value=3e-06  Score=59.86  Aligned_cols=57  Identities=23%  Similarity=0.431  Sum_probs=42.8

Q ss_pred             ccccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEE
Q 031987           88 KFPWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYS  146 (149)
Q Consensus        88 ~f~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yv  146 (149)
                      .+.+| .+.-|++||++|++++..+|+  .+.++|||++++|+|..+.+....  +.+..++
T Consensus        15 ~~~~h~h~~~~i~~v~~G~~~~~~~~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i   74 (136)
T PF02311_consen   15 EFPPHWHDFYEIIYVLSGEGTLHIDGQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWI   74 (136)
T ss_dssp             SEEEETT-SEEEEEEEEE-EEEEETTE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE
T ss_pred             ccCCEECCCEEEEEEeCCEEEEEECCE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEE
Confidence            44555 458999999999999999998  899999999999999999999998  5665554

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=98.38  E-value=5.1e-06  Score=72.62  Aligned_cols=67  Identities=18%  Similarity=0.252  Sum_probs=53.4

Q ss_pred             eeeeEecCCccc---cccCCCceEEEEEEeEEEEEECC---cceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEE
Q 031987           78 SWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG---REGSFEIGTGDLVVFPKGMKITWDVIE--AVNKH  144 (149)
Q Consensus        78 ~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg---g~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~  144 (149)
                      +.......||..   |||...+|++|||+|++++++.+   .++...+++||+++||+|..|..+..+  +++-.
T Consensus       246 s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL  320 (367)
T TIGR03404       246 AAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFL  320 (367)
T ss_pred             EEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEE
Confidence            345677788875   56777899999999999999742   226789999999999999999999874  44433

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>smart00835 Cupin_1 Cupin

Probab=98.36  E-value=3.7e-06  Score=63.54  Aligned_cols=63  Identities=24%  Similarity=0.258  Sum_probs=50.0

Q ss_pred             ceeeeEecCCccc-cccC--CCceEEEEEEeEEEEEECCcc----eEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           77 TSWPKWGCPPSKF-PWTF--TATETMYLLEGKVIVYVDGRE----GSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        77 ~~~giWe~~pg~f-~~h~--~~dE~~yVLEG~v~vt~dgg~----~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      .....+..+||.. ..|+  ..+|++||++|++++..++.+    ..+.+++||+++||+|..|.+...+
T Consensus        30 ~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~   99 (146)
T smart00835       30 ISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSG   99 (146)
T ss_pred             eEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCC
Confidence            3456678888875 3444  478999999999999986541    2788999999999999999998753

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.35  E-value=2e-06  Score=76.75  Aligned_cols=62  Identities=10%  Similarity=0.111  Sum_probs=51.4

Q ss_pred             EecCCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEE
Q 031987           82 WGCPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHY  145 (149)
Q Consensus        82 We~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Y  145 (149)
                      +...||..   ++|.+.+|++|||+|+++++.+|.  ++.+++||+++||+|..|.|....  +++-..
T Consensus       381 ~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~  447 (468)
T TIGR01479       381 ITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE--TLLLTENESTYIPLGVIHRLENPGKIPLELIE  447 (468)
T ss_pred             EEECCCCccCccccCCCceEEEEEeeEEEEEECCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence            55567763   356678999999999999999988  899999999999999999999864  454443

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK11171 hypothetical protein; Provisional

Probab=98.34  E-value=7.9e-06  Score=68.23  Aligned_cols=67  Identities=18%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             eeeeEecCCccc-cc--cCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           78 SWPKWGCPPSKF-PW--TFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        78 ~~giWe~~pg~f-~~--h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      ..-.++..||.. ..  +...+|.+|||+|+++++++|+  .+.+++||+++|+.+..+.|.....-.-.|.
T Consensus       185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl  254 (266)
T PRK11171        185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYL  254 (266)
T ss_pred             EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEE
Confidence            445577889864 33  4567899999999999999887  9999999999999999999998754333343

>PRK11171 hypothetical protein; Provisional

Probab=98.33  E-value=6e-06  Score=68.94  Aligned_cols=66  Identities=18%  Similarity=0.290  Sum_probs=51.3

Q ss_pred             eeeEecCCccc---cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEE
Q 031987           79 WPKWGCPPSKF---PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f---~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yv  146 (149)
                      ...++..||.-   +.|. ..+|++|||+|+++++.+|.  ++.+.+||+++||+|..|+|+..  ++.+-.++
T Consensus        63 ~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v  134 (266)
T PRK11171         63 QYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK--THALSEGGYAYLPPGSDWTLRNAGAEDARFHWI  134 (266)
T ss_pred             EEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            34566677653   2333 45899999999999999887  89999999999999999999975  34444433

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.31  E-value=8.5e-06  Score=67.91  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=47.7

Q ss_pred             eeeEecCCccc---cc-cCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           79 WPKWGCPPSKF---PW-TFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        79 ~giWe~~pg~f---~~-h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      ...++..|+.-   +. |-..+|++|||+|+++++.+|.  .+++++||.++||+|..++|+...
T Consensus        60 ~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~--~~~L~~Gd~~y~pa~~~H~~~N~~  122 (260)
T TIGR03214        60 QYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE--THELREGGYAYLPPGSKWTLANAQ  122 (260)
T ss_pred             EEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCCEEEEECC
Confidence            44566667543   12 2335899999999999999887  899999999999999999998764

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.24  E-value=3.5e-06  Score=75.99  Aligned_cols=60  Identities=15%  Similarity=0.178  Sum_probs=50.4

Q ss_pred             CCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEE
Q 031987           85 PPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYS  146 (149)
Q Consensus        85 ~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yv  146 (149)
                      .||..   ++|.+.+|+.||++|+++++++|.  .+.+++||+++||+|..|+|+..  ++++-..+
T Consensus       393 ~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V  457 (478)
T PRK15460        393 KPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD--IKLLGENESIYIPLGATHCLENPGKIPLDLIEV  457 (478)
T ss_pred             CCCCcCCcCCCCCCceEEEEEeeEEEEEECCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            46643   567778899999999999999998  89999999999999999999986  45554443

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=98.19  E-value=4.5e-05  Score=66.74  Aligned_cols=66  Identities=20%  Similarity=0.416  Sum_probs=48.7

Q ss_pred             eEecCCccc---cccCCCceEEEEEEeEEEEEECCc-ceEE--EEcCCcEEEEcCCcEEEEEEcCc-eEEEEEe
Q 031987           81 KWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGR-EGSF--EIGTGDLVVFPKGMKITWDVIEA-VNKHYSL  147 (149)
Q Consensus        81 iWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg-~~~~--~i~aGD~v~~PkG~~~tW~v~e~-vrK~Yvi  147 (149)
                      ..+..||..   ||| ..+|++||++|+++++..+. ++.+  .+++||+++||+|..|.+...+. .+-.+++
T Consensus        71 ~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf  143 (367)
T TIGR03404        71 NMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVF  143 (367)
T ss_pred             EEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEe
Confidence            345566653   566 46899999999999999531 1455  49999999999999999998743 4433333

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.08  E-value=4e-05  Score=63.88  Aligned_cols=69  Identities=16%  Similarity=0.096  Sum_probs=55.1

Q ss_pred             CceeeeEecCCcccc---ccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           76 VTSWPKWGCPPSKFP---WTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        76 v~~~giWe~~pg~f~---~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      .+...+-.-+||...   .|...+|..|||||+..+.++|.  .+.+++||++++|+|..+.......-.-.|.
T Consensus       178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l  249 (260)
T TIGR03214       178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYL  249 (260)
T ss_pred             CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCE--EEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence            344566788888763   33446789999999999999887  9999999999999999999999755444443

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.03  E-value=3.3e-05  Score=62.34  Aligned_cols=70  Identities=16%  Similarity=0.111  Sum_probs=52.0

Q ss_pred             ceeeeEecCCccc---------cccC--CCceEEEEEEeEEEEEECCc---ceEEEEcCCcEEEEcCCcEEEEEEcC--c
Q 031987           77 TSWPKWGCPPSKF---------PWTF--TATETMYLLEGKVIVYVDGR---EGSFEIGTGDLVVFPKGMKITWDVIE--A  140 (149)
Q Consensus        77 ~~~giWe~~pg~f---------~~h~--~~dE~~yVLEG~v~vt~dgg---~~~~~i~aGD~v~~PkG~~~tW~v~e--~  140 (149)
                      ..+|+-...||..         |+|.  +..|++|||+|++.+..++.   .....++|||++++|+|+.|.-....  +
T Consensus        68 L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~ep  147 (191)
T PRK04190         68 LNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEP  147 (191)
T ss_pred             eEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCC
Confidence            3466666677764         4554  34699999999999998754   13689999999999999999988754  5


Q ss_pred             eEEEEE
Q 031987          141 VNKHYS  146 (149)
Q Consensus       141 vrK~Yv  146 (149)
                      ++...+
T Consensus       148 l~fl~v  153 (191)
T PRK04190        148 LVFLAC  153 (191)
T ss_pred             EEEEEE
Confidence            554443

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=97.90  E-value=4.3e-05  Score=59.49  Aligned_cols=53  Identities=25%  Similarity=0.421  Sum_probs=46.5

Q ss_pred             CCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           85 PPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        85 ~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      .||.   +..|.+.+|..+|++|++.++.+|.  ...+++||.+++|+|..|+-+..+
T Consensus        71 ~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~--~~~~~~g~sv~Ip~g~~H~i~n~g  126 (151)
T PF01050_consen   71 NPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE--EFTLKEGDSVYIPRGAKHRIENPG  126 (151)
T ss_pred             cCCCccceeeecccccEEEEEeCeEEEEECCE--EEEEcCCCEEEECCCCEEEEECCC
Confidence            3565   3467788999999999999999888  999999999999999999998753

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=97.71  E-value=7.6e-05  Score=58.38  Aligned_cols=59  Identities=22%  Similarity=0.506  Sum_probs=48.6

Q ss_pred             CCcee-eeEecCCcccc-ccCCCceEEEEEEeEEEEEECCc-ceEEEEcCCcEEEEcCCcEE
Q 031987           75 GVTSW-PKWGCPPSKFP-WTFTATETMYLLEGKVIVYVDGR-EGSFEIGTGDLVVFPKGMKI  133 (149)
Q Consensus        75 Gv~~~-giWe~~pg~f~-~h~~~dE~~yVLEG~v~vt~dgg-~~~~~i~aGD~v~~PkG~~~  133 (149)
                      ....| |.|+.....|+ +|.+..|+..|++|++.+.+.|. +...++++||++.+|+|+-|
T Consensus        42 ~~~gW~gsW~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH  103 (163)
T COG4297          42 KANGWFGSWRGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGH  103 (163)
T ss_pred             hhcCCcccccccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCccc
Confidence            33346 78998887774 67789999999999999999652 27899999999999999764

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=97.65  E-value=0.00023  Score=51.87  Aligned_cols=58  Identities=19%  Similarity=0.308  Sum_probs=46.1

Q ss_pred             CCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987           85 PPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN  142 (149)
Q Consensus        85 ~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr  142 (149)
                      .||.+.......|.|-|++|++++...|..+-.++.+|+.+.+|++..-.-++.+...
T Consensus        31 ~pGeY~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~~   88 (94)
T PF06865_consen   31 LPGEYTFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPTA   88 (94)
T ss_dssp             -SECEEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-EE
T ss_pred             eeeEEEEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECccee
Confidence            4788888889999999999999999999866889999999999999999998887653

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PRK13500 transcriptional activator RhaR; Provisional

Probab=97.60  E-value=0.00022  Score=59.90  Aligned_cols=52  Identities=17%  Similarity=0.278  Sum_probs=45.6

Q ss_pred             ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987           89 FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN  142 (149)
Q Consensus        89 f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr  142 (149)
                      +++|+ +.-|++||++|++.+.++|.  .+.+.+||++++++|..|.++..+...
T Consensus        61 ~~~H~H~~~el~~v~~G~g~~~v~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~~~  113 (312)
T PRK13500         61 FAEHTHDFCELVIVWRGNGLHVLNDR--PYRITRGDLFYIHADDKHSYASVNDLV  113 (312)
T ss_pred             CCccccceEEEEEEEcCeEEEEECCE--EEeecCCeEEEECCCCeecccccCCce
Confidence            45664 47899999999999999998  999999999999999999998766543

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=97.59  E-value=0.00018  Score=56.41  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=35.4

Q ss_pred             cc-CCCceEEEEEEeEEEEEECCcc-e--EEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           91 WT-FTATETMYLLEGKVIVYVDGRE-G--SFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        91 ~h-~~~dE~~yVLEG~v~vt~dgg~-~--~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      .| ...+|+-||++|++-+.+.+++ .  .+.+.+||++++|+|+.|.++..+
T Consensus        87 EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~  139 (157)
T PF03079_consen   87 EHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGE  139 (157)
T ss_dssp             -EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEEST
T ss_pred             eEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCC
Confidence            45 3589999999999998885432 2  257999999999999999999876

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=97.58  E-value=0.00028  Score=57.52  Aligned_cols=45  Identities=20%  Similarity=0.247  Sum_probs=39.9

Q ss_pred             cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEE
Q 031987           90 PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWD  136 (149)
Q Consensus        90 ~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~  136 (149)
                      ++|+ +.-|+.||++|.+++.++|.  .+.+++||++++|+|..|...
T Consensus        37 ~~H~H~~~ei~~v~~G~~~~~i~~~--~~~l~~g~l~~i~p~~~H~~~   82 (278)
T PRK10296         37 GLHQHDYYEFTLVLTGRYYQEINGK--RVLLERGDFVFIPLGSHHQSF   82 (278)
T ss_pred             CCcccccEEEEEEEeceEEEEECCE--EEEECCCcEEEeCCCCcccee
Confidence            4554 57899999999999999998  899999999999999999654

>PRK10579 hypothetical protein; Provisional

Probab=97.57  E-value=0.00043  Score=50.48  Aligned_cols=57  Identities=16%  Similarity=0.290  Sum_probs=50.2

Q ss_pred             CCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987           85 PPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV  141 (149)
Q Consensus        85 ~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v  141 (149)
                      -||.+.......|.|-|++|++++...|..+-.++++|+.+.+|++..-.-++.+..
T Consensus        31 ~pGey~F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~t   87 (94)
T PRK10579         31 AEGEYTFSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEPT   87 (94)
T ss_pred             eeeEEEEcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEECcce
Confidence            367777777899999999999999999985678999999999999999888888654

>PRK13501 transcriptional activator RhaR; Provisional

Probab=97.56  E-value=0.00025  Score=58.35  Aligned_cols=45  Identities=11%  Similarity=0.285  Sum_probs=42.0

Q ss_pred             CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ++-|+.|+++|++++.++|.  .+.+.+||++++|+|..|.|+..+.
T Consensus        37 ~~~ei~~i~~G~~~~~i~~~--~~~l~~g~~~~I~p~~~H~~~~~~~   81 (290)
T PRK13501         37 QFCEIVIVWRGNGLHVLNDH--PYRITCGDVFYIQAADHHSYESVHD   81 (290)
T ss_pred             cceeEEEEecCceEEEECCe--eeeecCCeEEEEcCCCcccccccCC
Confidence            68999999999999999998  9999999999999999999987654

>PLN00212 glutelin; Provisional

Probab=97.55  E-value=0.0029  Score=57.78  Aligned_cols=81  Identities=17%  Similarity=0.257  Sum_probs=57.9

Q ss_pred             ChhhhhhcCCceeeeEecCCccc--cccCCCceEEEEEEeEEEEEEC--Ccce--------------------------E
Q 031987           67 PQSKLSELGVTSWPKWGCPPSKF--PWTFTATETMYLLEGKVIVYVD--GREG--------------------------S  116 (149)
Q Consensus        67 s~~~L~~lGv~~~giWe~~pg~f--~~h~~~dE~~yVLEG~v~vt~d--gg~~--------------------------~  116 (149)
                      ....|.-.|+. ...-..+|+.+  +.+.+..+++||++|+..+..-  |..+                          .
T Consensus        71 ~~~q~~caGv~-~~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv  149 (493)
T PLN00212         71 KNEQFQCTGVF-VIRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKI  149 (493)
T ss_pred             CChhhcccceE-EEEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccc
Confidence            34445555765 44566678887  3445799999999999988653  2111                          1


Q ss_pred             EEEcCCcEEEEcCCcEEEEEEcCc--eEEEEEec
Q 031987          117 FEIGTGDLVVFPKGMKITWDVIEA--VNKHYSLE  148 (149)
Q Consensus       117 ~~i~aGD~v~~PkG~~~tW~v~e~--vrK~Yvi~  148 (149)
                      ..++.||++.||+|..+=|...+.  +..+++++
T Consensus       150 ~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d  183 (493)
T PLN00212        150 HQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYD  183 (493)
T ss_pred             eEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEe
Confidence            589999999999999999998755  44556554

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=97.53  E-value=0.00017  Score=60.61  Aligned_cols=53  Identities=11%  Similarity=0.118  Sum_probs=46.0

Q ss_pred             ccccCC-CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEE
Q 031987           89 FPWTFT-ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNK  143 (149)
Q Consensus        89 f~~h~~-~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK  143 (149)
                      .+||++ +-|++|+++|++.+..+|.  .+.+.+||+++++.|..|.+...+..+.
T Consensus        39 ~~~HwH~e~Ei~yv~~G~~~~~i~g~--~~~l~~Gd~ili~s~~~H~~~~~~~~~~   92 (302)
T PRK10371         39 PTSHWHGQVEVNVPFDGDVEYLINNE--KVQINQGHITLFWACTPHQLTDPGNCRS   92 (302)
T ss_pred             CCCCccccEEEEEecCCcEEEEECCE--EEEEcCCcEEEEecCCcccccccCCCce
Confidence            356765 7899999999999999988  9999999999999999999877666543

>PRK13502 transcriptional activator RhaR; Provisional

Probab=97.52  E-value=0.00031  Score=57.23  Aligned_cols=51  Identities=16%  Similarity=0.232  Sum_probs=44.0

Q ss_pred             cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987           90 PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN  142 (149)
Q Consensus        90 ~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr  142 (149)
                      ++|+ ++-|++|+++|+++++.+|.  .+.+++||++++|+|..|.+...+...
T Consensus        32 ~~H~h~~~~l~~v~~G~~~~~i~~~--~~~l~~g~l~li~~~~~H~~~~~~~~~   83 (282)
T PRK13502         32 AEHTHEFCELVMVWRGNGLHVLNER--PYRITRGDLFYIRAEDKHSYTSVNDLV   83 (282)
T ss_pred             CccccceEEEEEEecCcEEEEECCE--EEeecCCcEEEECCCCcccccccCCce
Confidence            4443 47899999999999999988  899999999999999999998765543

>PRK13503 transcriptional activator RhaS; Provisional

Probab=97.38  E-value=0.00028  Score=57.08  Aligned_cols=50  Identities=14%  Similarity=0.284  Sum_probs=44.1

Q ss_pred             ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           89 FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        89 f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      +++|+ +.-|++|+++|.+++.++|.  .+.+++||++++|+|..|.|+..+.
T Consensus        28 ~~~H~H~~~ei~~v~~G~~~~~i~~~--~~~l~~g~~~~i~~~~~h~~~~~~~   78 (278)
T PRK13503         28 FPEHHHDFHEIVIVEHGTGIHVFNGQ--PYTLSGGTVCFVRDHDRHLYEHTDN   78 (278)
T ss_pred             ccccccCceeEEEEecCceeeEecCC--cccccCCcEEEECCCccchhhhccC
Confidence            34554 58999999999999999998  8999999999999999999987654

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=97.36  E-value=0.00063  Score=55.38  Aligned_cols=50  Identities=16%  Similarity=0.210  Sum_probs=43.3

Q ss_pred             cccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987           90 PWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV  141 (149)
Q Consensus        90 ~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v  141 (149)
                      ++|++  .-|++|+++|.+.+..+|.  .+.+++||++++|+|..|.|......
T Consensus        37 ~~H~H~~~~~l~~~~~G~~~~~~~~~--~~~l~~g~~~ii~~~~~H~~~~~~~~   88 (287)
T TIGR02297        37 PVHFHDRYYQLHYLTEGSIALQLDEH--EYSEYAPCFFLTPPSVPHGFVTDLDA   88 (287)
T ss_pred             CCcccccceeEEEEeeCceEEEECCE--EEEecCCeEEEeCCCCccccccCCCc
Confidence            44544  4799999999999999887  89999999999999999999876554

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=97.33  E-value=0.0034  Score=52.56  Aligned_cols=100  Identities=18%  Similarity=0.148  Sum_probs=64.7

Q ss_pred             CCcccccccCCccccceeeeEEEeeCCChhhhhhcCCceeeeEecCCcc-cc--c-cCCCceEEEEEEeEEEEEECCcce
Q 031987           40 SKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSK-FP--W-TFTATETMYLLEGKVIVYVDGREG  115 (149)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~V~i~~~ps~~~L~~lGv~~~giWe~~pg~-f~--~-h~~~dE~~yVLEG~v~vt~dgg~~  115 (149)
                      |+..|+++  ...+-|+-..+.|-..|-..--+.|-   -.+-+..|+. -.  . .-..+-+.||+||+++++.+|+  
T Consensus        29 pk~~~iVt--s~Lp~w~~tr~wilsrP~~Gf~~tF~---qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~--  101 (264)
T COG3257          29 PKGVMIVT--SILPFWENTRAWILSRPLSGFAATFV---QYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK--  101 (264)
T ss_pred             cCCcEEEE--eecCCCCCceEEEEeccccchhhhhh---hheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe--
Confidence            44556554  34556777666666665333222222   1223343333 11  1 1246789999999999999998  


Q ss_pred             EEEEcCCcEEEEcCCcEEEEE--EcCceEEEEE
Q 031987          116 SFEIGTGDLVVFPKGMKITWD--VIEAVNKHYS  146 (149)
Q Consensus       116 ~~~i~aGD~v~~PkG~~~tW~--v~e~vrK~Yv  146 (149)
                      +..+++|+-+++|+|...+.+  ..++.|.++.
T Consensus       102 th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~  134 (264)
T COG3257         102 THALREGGYAYLPPGSGWTLRNAQKEDSRFHWI  134 (264)
T ss_pred             EEEeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence            999999999999999999888  4455555543

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=97.27  E-value=0.00093  Score=54.93  Aligned_cols=60  Identities=20%  Similarity=0.225  Sum_probs=46.2

Q ss_pred             eeeEecCCccc---cccCCCce--EEEEEEeEEEEEECCcc---eEEEEcCCcEEEEcCCcEEEEEEc
Q 031987           79 WPKWGCPPSKF---PWTFTATE--TMYLLEGKVIVYVDGRE---GSFEIGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        79 ~giWe~~pg~f---~~h~~~dE--~~yVLEG~v~vt~dgg~---~~~~i~aGD~v~~PkG~~~tW~v~  138 (149)
                      .+....+||+.   |||-..||  +.|+|+|++++.+...+   .+..++|||++++|+|+-|.=..+
T Consensus        82 g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~  149 (209)
T COG2140          82 GAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINT  149 (209)
T ss_pred             ceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecC
Confidence            34566777854   56655555  99999999999987542   466789999999999998876665

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=97.26  E-value=0.0049  Score=43.93  Aligned_cols=61  Identities=23%  Similarity=0.275  Sum_probs=46.1

Q ss_pred             CceeeeEecCCcccc--cc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc
Q 031987           76 VTSWPKWGCPPSKFP--WT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        76 v~~~giWe~~pg~f~--~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~  138 (149)
                      -..+|.-+..|+...  .+ .+..-++||++|.+++++.+.  +..++.||.+.+|+|-.-..+..
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~--~f~v~~G~~F~VP~gN~Y~i~N~   74 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHET--SFVVTKGGSFQVPRGNYYSIKNI   74 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTE--EEEEETT-EEEE-TT-EEEEEE-
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCc--EEEEeCCCEEEECCCCEEEEEEC
Confidence            456888999998874  23 467788999999999999998  89999999999999987766663

>PF12852 Cupin_6: Cupin

Probab=97.13  E-value=0.00086  Score=52.05  Aligned_cols=44  Identities=20%  Similarity=0.364  Sum_probs=37.9

Q ss_pred             ceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           96 TETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        96 dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      --+.+|++|++.+..++++++..+.+||++++|+|..|+.....
T Consensus        36 ~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~~~   79 (186)
T PF12852_consen   36 ASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSSDP   79 (186)
T ss_pred             eEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCCCC
Confidence            56889999999999887337999999999999999999885443

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=97.07  E-value=0.0011  Score=50.94  Aligned_cols=57  Identities=23%  Similarity=0.373  Sum_probs=43.1

Q ss_pred             eeeeEe----cCCccc---cccCCCceEEEEEEeEEEEEECCc-ceEEEEcCCcEEEEcCCcEEE
Q 031987           78 SWPKWG----CPPSKF---PWTFTATETMYLLEGKVIVYVDGR-EGSFEIGTGDLVVFPKGMKIT  134 (149)
Q Consensus        78 ~~giWe----~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg-~~~~~i~aGD~v~~PkG~~~t  134 (149)
                      ..++|-    ..||.-   +.|-..+-.+|||+|++...-.+. ++..+.+|||++++|+|..+.
T Consensus        43 as~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHq  107 (142)
T COG4101          43 ASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQ  107 (142)
T ss_pred             cceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCc
Confidence            345553    456654   344556778999999999998763 256789999999999999875

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=96.99  E-value=0.0048  Score=43.19  Aligned_cols=56  Identities=23%  Similarity=0.312  Sum_probs=40.5

Q ss_pred             eeeEecCCcc-cccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           79 WPKWGCPPSK-FPWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        79 ~giWe~~pg~-f~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ..+-+.+||. ++.| ....|.+|||||++.  ++++    .+.+||.++.|+|..+++.+.+.
T Consensus        26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~--d~~~----~~~~G~~~~~p~g~~h~~~s~~g   83 (91)
T PF12973_consen   26 VSLLRLEPGASLPRHRHPGGEEILVLEGELS--DGDG----RYGAGDWLRLPPGSSHTPRSDEG   83 (91)
T ss_dssp             EEEEEE-TTEEEEEEEESS-EEEEEEECEEE--ETTC----EEETTEEEEE-TTEEEEEEESSC
T ss_pred             EEEEEECCCCCcCccCCCCcEEEEEEEEEEE--ECCc----cCCCCeEEEeCCCCccccCcCCC
Confidence            3444555665 4666 456788899999988  3444    46999999999999999998765

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=96.95  E-value=0.0029  Score=56.82  Aligned_cols=65  Identities=15%  Similarity=0.284  Sum_probs=46.0

Q ss_pred             eeEecCCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           80 PKWGCPPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        80 giWe~~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      .+|.+..+-   +-..-+.||++++-+|++++..+=|  ...+++||.++||+|++.+++..++.| .|++
T Consensus       128 ~~y~~~~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G--~L~v~pGd~~VIPRG~~~rv~l~~p~r-gyi~  195 (424)
T PF04209_consen  128 HVYAANASMDDRAFRNADGDELIFPQQGSLRLETEFG--RLDVRPGDYVVIPRGTRFRVELPGPAR-GYII  195 (424)
T ss_dssp             EEEEE-S---SEEEEESSEEEEEEEEES-EEEEETTE--EEEE-TTEEEEE-TT--EEEE-SSSEE-EEEE
T ss_pred             EEEEcCCCCCCcceEcCCCCEEEEEEECCEEEEecCe--eEEEcCCeEEEECCeeEEEEEeCCCce-EEEE
Confidence            457777543   2235689999999999999999999  899999999999999999999997654 4544

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=96.84  E-value=0.004  Score=56.09  Aligned_cols=67  Identities=13%  Similarity=0.307  Sum_probs=54.0

Q ss_pred             eeEecCCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEec
Q 031987           80 PKWGCPPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE  148 (149)
Q Consensus        80 giWe~~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~  148 (149)
                      .++.+...-   +-...+.||++++-+|++.+..+=|  ...+++||.++||+|+..+++..+.--+-|+++
T Consensus       136 ~~y~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E  205 (438)
T PRK05341        136 HLYAANRSMQDRYFYNADGELLIVPQQGRLRLATELG--VLDVEPGEIAVIPRGVKFRVELPDGPARGYVCE  205 (438)
T ss_pred             EEEeCCCCcccceeecCCCCEEEEEEeCCEEEEEecc--ceEecCCCEEEEcCccEEEEecCCCCeeEEEEE
Confidence            567777542   2234579999999999999999999  899999999999999999999866444566653

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=96.81  E-value=0.0046  Score=48.59  Aligned_cols=45  Identities=22%  Similarity=0.497  Sum_probs=31.0

Q ss_pred             cccCC-CceEEEEEEeEEEEEE--CCcceEEEEcCCcEEEEcCCcEEE
Q 031987           90 PWTFT-ATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGMKIT  134 (149)
Q Consensus        90 ~~h~~-~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~v~~PkG~~~t  134 (149)
                      ++|++ .+|+||-++|...+.+  +|+...+.+++||++.+|+++.|.
T Consensus        47 DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHs   94 (151)
T PF06052_consen   47 DYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHS   94 (151)
T ss_dssp             SEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EE
T ss_pred             ccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCC
Confidence            56754 7999999999988766  444466789999999999999875

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=96.77  E-value=0.0077  Score=52.55  Aligned_cols=51  Identities=18%  Similarity=0.350  Sum_probs=43.7

Q ss_pred             CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      ....++||+||+...+++|+  .++.++||+|++|.+..+++...+... .|.+
T Consensus       269 T~s~Vf~VieG~G~s~ig~~--~~~W~~gD~f~vPsW~~~~h~a~~da~-Lf~~  319 (335)
T TIGR02272       269 TDATVFCVVEGRGQVRIGDA--VFRFSPKDVFVVPSWHPVRFEASDDAV-LFSF  319 (335)
T ss_pred             cccEEEEEEeCeEEEEECCE--EEEecCCCEEEECCCCcEecccCCCeE-EEEe
Confidence            46899999999999999888  899999999999999999988776643 4443

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=96.75  E-value=0.0055  Score=55.09  Aligned_cols=65  Identities=14%  Similarity=0.269  Sum_probs=52.9

Q ss_pred             eeEecCCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           80 PKWGCPPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        80 giWe~~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      .++.|...-   +-...+.||++++-+|++.+..+=|  ...+++||.++||+|+..+++..++.| .|++
T Consensus       130 ~iy~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~gp~r-gyi~  197 (429)
T TIGR01015       130 HIYLCNASMENRAFYNADGDFLIVPQQGALLITTEFG--RLLVEPNEICVIPRGVRFRVTVLEPAR-GYIC  197 (429)
T ss_pred             EEEeCCCCcccceeeccCCCEEEEEEeCcEEEEEecc--ceEecCCCEEEecCccEEEEeeCCCce-EEEE
Confidence            567777542   1234579999999999999999999  899999999999999999999887655 4544

Missing in human disease alkaptonuria.

>PLN02658 homogentisate 1,2-dioxygenase

Probab=96.56  E-value=0.0085  Score=54.01  Aligned_cols=67  Identities=16%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             eeEecCCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEec
Q 031987           80 PKWGCPPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE  148 (149)
Q Consensus        80 giWe~~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~  148 (149)
                      .++.|...-   +-...+.||++++-+|++.+..+=|  ...+++||.++||+|++.+.+..+.--..|+++
T Consensus       129 ~iy~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E  198 (435)
T PLN02658        129 HMYVANKSMDDCAFCNADGDFLIVPQQGRLWIKTELG--KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLE  198 (435)
T ss_pred             EEEeCCCCCccceeecCCCCEEEEEEeCCEEEEEecc--ceEecCCCEEEecCccEEEEecCCCCeeEEEEe
Confidence            567777542   2234579999999999999999999  899999999999999998888766445566653

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.46  E-value=0.0073  Score=48.41  Aligned_cols=49  Identities=24%  Similarity=0.426  Sum_probs=40.3

Q ss_pred             ccC-CCceEEEEEEeEEEEEECCcce---EEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           91 WTF-TATETMYLLEGKVIVYVDGREG---SFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        91 ~h~-~~dE~~yVLEG~v~vt~dgg~~---~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      -|. ..+|+-|+|+|..-+.+.+.++   .+-+..||++++|+|.-|+++++.
T Consensus        88 Ehlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~  140 (179)
T KOG2107|consen   88 EHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP  140 (179)
T ss_pred             HhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence            354 4799999999999999876521   345899999999999999999874

>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.38  E-value=0.018  Score=41.68  Aligned_cols=65  Identities=22%  Similarity=0.340  Sum_probs=53.4

Q ss_pred             CCceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987           75 GVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV  141 (149)
Q Consensus        75 Gv~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v  141 (149)
                      |..+.|+  ..||++..-...-|.|.|+.|.+++...|..+-.++.||+.+.+|.+..-...|.++.
T Consensus        23 g~asVGV--m~~geytFgTa~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaeat   87 (94)
T COG3123          23 GRASVGV--MAPGEYTFGTAAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEAT   87 (94)
T ss_pred             CceeEEE--EeceeEEeccCCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeeee
Confidence            4444444  3466666666789999999999999999887888999999999999999988888764

>PLN00212 glutelin; Provisional

Probab=96.17  E-value=0.0093  Score=54.49  Aligned_cols=55  Identities=18%  Similarity=0.399  Sum_probs=42.0

Q ss_pred             eeEecCCccc---cccCCCceEEEEEEeEEEEEECC--cceEE--EEcCCcEEEEcCCcEEE
Q 031987           80 PKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG--REGSF--EIGTGDLVVFPKGMKIT  134 (149)
Q Consensus        80 giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg--g~~~~--~i~aGD~v~~PkG~~~t  134 (149)
                      ..-...++..   |||....|++||++|++.+.+-+  |...+  ++++||+++||+|..+.
T Consensus       351 ~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~  412 (493)
T PLN00212        351 TRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVL  412 (493)
T ss_pred             EEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEE
Confidence            3344456654   57778999999999999998743  22344  69999999999999883

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=96.17  E-value=0.016  Score=47.42  Aligned_cols=44  Identities=23%  Similarity=0.428  Sum_probs=38.6

Q ss_pred             CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      ..-++.++++|++.+..+++  .+.+++||++++|+|..+.+....
T Consensus        48 ~~~~i~~~~~G~~~~~~~~~--~~~~~~g~~i~i~p~~~h~~~~~~   91 (290)
T PRK10572         48 KGYILNLTIRGQGVIFNGGR--AFVCRPGDLLLFPPGEIHHYGRHP   91 (290)
T ss_pred             cceEEEEEEeccEEEecCCe--eEecCCCCEEEECCCCceeeccCC
Confidence            45688999999999998887  899999999999999999876543

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.06  E-value=0.02  Score=46.18  Aligned_cols=50  Identities=24%  Similarity=0.361  Sum_probs=40.7

Q ss_pred             cc-CCCceEEEEEEeEEEEEECCcc---eEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           91 WT-FTATETMYLLEGKVIVYVDGRE---GSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        91 ~h-~~~dE~~yVLEG~v~vt~dgg~---~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .| ...+|+-|+|+|+..+.+-+.+   -.+.+.+||++.+|+|..|.++..+.
T Consensus        90 EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~  143 (181)
T COG1791          90 EHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTES  143 (181)
T ss_pred             HhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCC
Confidence            45 4589999999999998875441   23468899999999999999998865

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=96.03  E-value=0.015  Score=46.91  Aligned_cols=47  Identities=21%  Similarity=0.276  Sum_probs=32.2

Q ss_pred             CCCceEEEEEEeEEEEEECCcc-------eEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           93 FTATETMYLLEGKVIVYVDGRE-------GSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        93 ~~~dE~~yVLEG~v~vt~dgg~-------~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      .+..|++++|+|++.+-..+.+       -...++|||.+.+|.|+.|.=-...
T Consensus        81 ~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g  134 (182)
T PF06560_consen   81 LSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTG  134 (182)
T ss_dssp             TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-S
T ss_pred             CCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECC
Confidence            4578999999999999875431       1367999999999999999866653

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=95.85  E-value=0.073  Score=40.79  Aligned_cols=64  Identities=13%  Similarity=0.072  Sum_probs=54.5

Q ss_pred             Cccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEecC
Q 031987           86 PSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK  149 (149)
Q Consensus        86 pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~~  149 (149)
                      +|+- +.+| +.=|.+|.++|+.+++.-+.++.+.++||.+..+-+.-.|..+..+.++-.-+|+|
T Consensus        44 aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~dm~~vCVFnP  109 (126)
T PF06339_consen   44 AGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKTDMRLVCVFNP  109 (126)
T ss_pred             CCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecCCEEEEEEcCC
Confidence            4543 4455 68999999999999999643389999999999999999999999999998888875

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=95.76  E-value=0.032  Score=44.29  Aligned_cols=65  Identities=17%  Similarity=0.224  Sum_probs=37.7

Q ss_pred             CCceeeeEecC--Cccc-ccc-CCCceEEEEEEeEEEEEECCc-------ceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           75 GVTSWPKWGCP--PSKF-PWT-FTATETMYLLEGKVIVYVDGR-------EGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        75 Gv~~~giWe~~--pg~f-~~h-~~~dE~~yVLEG~v~vt~dgg-------~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      |-....+|--+  ||+- +.| ...+|+++||+|+.++...+.       .+++.+.+++.+.||.+..|+--..+
T Consensus        40 GmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~  115 (167)
T PF02041_consen   40 GMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN  115 (167)
T ss_dssp             --SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred             CceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence            33344567665  7765 455 458999999999999998642       35688999999999999998755543

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=95.61  E-value=0.025  Score=46.06  Aligned_cols=58  Identities=12%  Similarity=0.058  Sum_probs=45.8

Q ss_pred             ceeeeEecCCcc-cccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           77 TSWPKWGCPPSK-FPWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        77 ~~~giWe~~pg~-f~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .....|...||. ++.| ....|+.+||+|++.  .++    ..+.+||.+..|.|..|++...+.
T Consensus       127 ~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~--de~----g~y~~Gd~i~~p~~~~H~p~a~~~  186 (215)
T TIGR02451       127 ARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS--DET----GVYGVGDFEEADGSVQHQPRTVSG  186 (215)
T ss_pred             cEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE--cCC----CccCCCeEEECCCCCCcCcccCCC
Confidence            456788999986 4655 357899999999963  333    468999999999999999988753

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.33  E-value=0.087  Score=46.94  Aligned_cols=66  Identities=14%  Similarity=0.248  Sum_probs=53.0

Q ss_pred             eeEecCCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           80 PKWGCPPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        80 giWe~~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      -+|-.+.+-   +-+.-+.||++|+-.|++++..+=|  ..++++||..+||+|++-+-+..+.--..|..
T Consensus       128 ~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~G--~l~v~pgeiavIPRG~~frve~~~~~~rgy~~  196 (427)
T COG3508         128 HVYKVNESMTKRFFRNADGELLIVPQQGELRLKTELG--VLEVEPGEIAVIPRGTTFRVELKDGEARGYGC  196 (427)
T ss_pred             EEEEccccchhhhhhcCCCCEEEEeecceEEEEEeec--eEEecCCcEEEeeCCceEEEEecCCceEEEEE
Confidence            356655443   3344578999999999999999998  89999999999999999999887666555554

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=95.31  E-value=0.14  Score=41.90  Aligned_cols=46  Identities=17%  Similarity=0.268  Sum_probs=39.3

Q ss_pred             eEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEE
Q 031987           97 ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKH  144 (149)
Q Consensus        97 E~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~  144 (149)
                      -+.++++|++.+..+|.  ...+.|||+++++.+..+.+...+..+..
T Consensus        73 ~l~~~~~G~~~~~~~g~--~~~l~~G~~~l~~~~~p~~~~~~~~~~~~  118 (302)
T PRK09685         73 FTVFQLSGHAIIEQDDR--QVQLAAGDITLIDASRPCSIYPQGLSEQI  118 (302)
T ss_pred             EEEEEecceEEEEECCe--EEEEcCCCEEEEECCCCcEeecCCCceeE
Confidence            35566899999999988  89999999999999999998887766544

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=95.17  E-value=0.14  Score=43.41  Aligned_cols=42  Identities=17%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCc-EEEEEE
Q 031987           94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM-KITWDV  137 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~-~~tW~v  137 (149)
                      ..-.++.+++|++++..+++  .+.+++|+++++|++. ..+.+-
T Consensus       252 ~~~~il~v~~G~~~i~~~~~--~~~l~~G~~~~ipa~~~~~~i~g  294 (302)
T TIGR00218       252 QSALILSVLEGSGRIKSGGK--TLPLKKGESFFIPAHLGPFTIEG  294 (302)
T ss_pred             CCcEEEEEEcceEEEEECCE--EEEEecccEEEEccCCccEEEEe
Confidence            35567889999999987665  8999999999999987 455543

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=95.10  E-value=0.091  Score=39.63  Aligned_cols=50  Identities=16%  Similarity=0.181  Sum_probs=31.4

Q ss_pred             ccccCCCceEEEEEEeEEEEEECCcc--eEEEEcCCc-EEEEcCCcEEEEEEc
Q 031987           89 FPWTFTATETMYLLEGKVIVYVDGRE--GSFEIGTGD-LVVFPKGMKITWDVI  138 (149)
Q Consensus        89 f~~h~~~dE~~yVLEG~v~vt~dgg~--~~~~i~aGD-~v~~PkG~~~tW~v~  138 (149)
                      +++|...+|.+++++|++++..+++.  +.+.+...+ .+.+|+|..+.+...
T Consensus        48 ~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~  100 (131)
T PF05523_consen   48 WHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNF  100 (131)
T ss_dssp             EEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE--
T ss_pred             ccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhcc
Confidence            35567799999999999999987653  345555554 899999999988643

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=94.71  E-value=0.15  Score=37.51  Aligned_cols=47  Identities=19%  Similarity=0.314  Sum_probs=40.8

Q ss_pred             EEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           98 TMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        98 ~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      +...++|.+.++.++.  ...+.|||+++++.+...+.+..+..++...
T Consensus        58 l~~~~~G~~~~~~~g~--~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l  104 (172)
T PF14525_consen   58 LVLPLSGSARIEQGGR--EVELAPGDVVLLDPGQPYRLEFSAGCRQLSL  104 (172)
T ss_pred             EEEEccCCEEEEECCE--EEEEcCCeEEEEcCCCCEEEEECCCccEEEE
Confidence            3445899999999877  8999999999999999999999888887654

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=94.55  E-value=0.091  Score=45.94  Aligned_cols=82  Identities=15%  Similarity=0.052  Sum_probs=52.5

Q ss_pred             eeEEEeeCCChhhhhhc-CCceeeeEecCCcccc-cc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEE
Q 031987           58 FGVKIEKNPPQSKLSEL-GVTSWPKWGCPPSKFP-WT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKIT  134 (149)
Q Consensus        58 ~~V~i~~~ps~~~L~~l-Gv~~~giWe~~pg~f~-~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~t  134 (149)
                      -.+.+-.||.-..-..+ ....+++=...||... -| ....-+.+|+||+...+.=|| +.+.+++||+++.|.+..|.
T Consensus        61 Rrvl~l~NP~~~g~~~~t~tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~g-~~~~~~~gD~~~tP~w~wH~  139 (335)
T TIGR02272        61 RRVLVLENPGLRGQSSITTSLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAVDG-ERTTMHPGDFIITPSWTWHD  139 (335)
T ss_pred             eEEEEEeCCCCCCccccchhHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEECC-EEEeeeCCCEEEeCCCeeEe
Confidence            35666667742111111 1111333344577653 34 357789999999986554344 49999999999999999988


Q ss_pred             EEEcCc
Q 031987          135 WDVIEA  140 (149)
Q Consensus       135 W~v~e~  140 (149)
                      +...+.
T Consensus       140 H~n~~d  145 (335)
T TIGR02272       140 HGNPGD  145 (335)
T ss_pred             cccCCC
Confidence            876644

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=94.54  E-value=0.16  Score=43.43  Aligned_cols=54  Identities=28%  Similarity=0.429  Sum_probs=41.6

Q ss_pred             cCCCceEEEE-EEeEEEEEECCcceEEEEcCCcEEEEcCCcE-EEEEEcCce--EEEEEe
Q 031987           92 TFTATETMYL-LEGKVIVYVDGREGSFEIGTGDLVVFPKGMK-ITWDVIEAV--NKHYSL  147 (149)
Q Consensus        92 h~~~dE~~yV-LEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~-~tW~v~e~v--rK~Yvi  147 (149)
                      .....|+++| |.|.++|+.+|.  .+++++.|++++|+|.. .+....+..  -|+|+.
T Consensus        70 fl~rrE~giV~lgG~~~V~vdG~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~  127 (276)
T PRK00924         70 FLERRELGIINIGGAGTVTVDGE--TYELGHRDALYVGKGAKEVVFASADAANPAKFYLN  127 (276)
T ss_pred             ecCCcEEEEEEccceEEEEECCE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence            3467786655 899999999887  88899999999999977 777655432  466653

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=94.52  E-value=0.24  Score=43.93  Aligned_cols=37  Identities=8%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcE
Q 031987           94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMK  132 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~  132 (149)
                      ..-+++.+++|++++..+++  +..+++|+++++|++..
T Consensus       338 ~~~~Illv~~G~~~i~~~~~--~~~l~~G~~~fipa~~~  374 (389)
T PRK15131        338 QSAAILFCVEGEAVLWKGEQ--QLTLKPGESAFIAANES  374 (389)
T ss_pred             CCcEEEEEEcceEEEEeCCe--EEEECCCCEEEEeCCCc
Confidence            44589999999999987555  79999999999999754

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=93.74  E-value=0.41  Score=40.30  Aligned_cols=67  Identities=21%  Similarity=0.277  Sum_probs=45.9

Q ss_pred             eeeEecCCccc-cccCCCceEEEE-EEeEEEEEECCcceEEEEcCC--------cEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           79 WPKWGCPPSKF-PWTFTATETMYL-LEGKVIVYVDGREGSFEIGTG--------DLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~~~dE~~yV-LEG~v~vt~dgg~~~~~i~aG--------D~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      .+.+..++++. .......|.+.| |+|+++++.+|. +...++.-        |++++|+|...+-...+. -++|+.
T Consensus        29 ~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~-ae~~~~  105 (261)
T PF04962_consen   29 FGVLRLEAGESLEFELERRELGVVNLGGKATVTVDGE-EFYELGGRESVFDGPPDALYVPRGTKVVIFASTD-AEFAVC  105 (261)
T ss_dssp             CCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESST-EEEEEE
T ss_pred             eEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcCC-CEEEEE
Confidence            44566666653 334566666655 899999999995 57888888        999999999988887666 555543

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=93.62  E-value=0.65  Score=39.64  Aligned_cols=60  Identities=17%  Similarity=0.210  Sum_probs=37.1

Q ss_pred             eeEecCCc--cccccCCC-ceEEEEEEeEEEEEECC---------------------cceEEEEcCCcEEEEcCCcEEEE
Q 031987           80 PKWGCPPS--KFPWTFTA-TETMYLLEGKVIVYVDG---------------------REGSFEIGTGDLVVFPKGMKITW  135 (149)
Q Consensus        80 giWe~~pg--~f~~h~~~-dE~~yVLEG~v~vt~dg---------------------g~~~~~i~aGD~v~~PkG~~~tW  135 (149)
                      ..+-..+|  .|..|++. |=|+.=++|+=+..+-+                     -...++++|||++++|+|+.|.=
T Consensus       117 n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~  196 (319)
T PF08007_consen  117 NAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQA  196 (319)
T ss_dssp             EEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEE
T ss_pred             EEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCC
Confidence            34555666  67778764 44455588887766533                     01368899999999999999988


Q ss_pred             EEcC
Q 031987          136 DVIE  139 (149)
Q Consensus       136 ~v~e  139 (149)
                      ...+
T Consensus       197 ~~~~  200 (319)
T PF08007_consen  197 VTTD  200 (319)
T ss_dssp             EESS
T ss_pred             CCCC
Confidence            8776

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=93.61  E-value=0.36  Score=32.34  Aligned_cols=56  Identities=14%  Similarity=0.312  Sum_probs=44.5

Q ss_pred             EecCCccc-cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEE
Q 031987           82 WGCPPSKF-PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDV  137 (149)
Q Consensus        82 We~~pg~f-~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v  137 (149)
                      |+..|+.. .+........-+.+|.+=+|.++..+.+-+.|||.+.+++|....-+.
T Consensus         2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~a   58 (63)
T PF11142_consen    2 FELAPGETLSLRAAAGQRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLSA   58 (63)
T ss_pred             EEeCCCceEEeEcCCCcEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence            55566654 466666666999999999999986678999999999999998865543

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=93.13  E-value=0.22  Score=44.49  Aligned_cols=51  Identities=18%  Similarity=0.294  Sum_probs=44.8

Q ss_pred             CCceEEEEEEeEEEEEEC-CcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           94 TATETMYLLEGKVIVYVD-GREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~d-gg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      +.--+..|++|+.++..+ ++  ...+..||+++||+....+....+..-+.|.
T Consensus       352 ~~~SIllv~~G~g~l~~~t~~--~~~v~rG~V~fI~a~~~i~~~~~sd~~~~yr  403 (411)
T KOG2757|consen  352 DGPSILLVLKGSGILKTDTDS--KILVNRGDVLFIPANHPIHLSSSSDPFLGYR  403 (411)
T ss_pred             CCceEEEEEecceEEecCCCC--ceeeccCcEEEEcCCCCceeeccCcceeeee
Confidence            456788999999999999 55  8999999999999999999998888666664

>PLN02288 mannose-6-phosphate isomerase

Probab=93.08  E-value=0.13  Score=45.84  Aligned_cols=43  Identities=19%  Similarity=0.368  Sum_probs=34.8

Q ss_pred             CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEE
Q 031987           93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITW  135 (149)
Q Consensus        93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW  135 (149)
                      .+.-+++.|++|++++...++.....+++|+++++|++..+.|
T Consensus       352 ~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~~~~  394 (394)
T PLN02288        352 VPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTEIHV  394 (394)
T ss_pred             CCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCcccC
Confidence            3567899999999999877661136799999999999987654

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=91.78  E-value=0.95  Score=39.41  Aligned_cols=51  Identities=16%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             eeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCC
Q 031987           78 SWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKG  130 (149)
Q Consensus        78 ~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG  130 (149)
                      +...|....-.-......-.+++++||++++..+++  ...+++|+.+++|+.
T Consensus       243 ~l~~~~i~~~~~~~~~~~~~il~v~eG~~~l~~~~~--~~~l~~G~s~~ipa~  293 (312)
T COG1482         243 ALYKWDISGTAEFIKQESFSILLVLEGEGTLIGGGQ--TLKLKKGESFFIPAN  293 (312)
T ss_pred             EEEEEeccChhhhccCCCcEEEEEEcCeEEEecCCE--EEEEcCCcEEEEEcC
Confidence            344555553111122346788999999999999976  999999999999998

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.28  E-value=0.57  Score=41.07  Aligned_cols=43  Identities=21%  Similarity=0.293  Sum_probs=37.7

Q ss_pred             CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEE
Q 031987           93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDV  137 (149)
Q Consensus        93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v  137 (149)
                      ....-+++|.||+....++|.  ++.+.+||+|++|....+....
T Consensus       279 ~t~s~iy~V~eGsg~~~Ig~~--rf~~~~~D~fvVPsW~~~~~~~  321 (351)
T COG3435         279 HTDSTIYHVVEGSGYTIIGGE--RFDWSAGDIFVVPSWAWHEHVN  321 (351)
T ss_pred             ccCCEEEEEEecceeEEECCE--EeeccCCCEEEccCcceeeccc
Confidence            345677889999999999888  9999999999999998887766

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.10  E-value=0.36  Score=42.27  Aligned_cols=50  Identities=18%  Similarity=0.235  Sum_probs=41.4

Q ss_pred             CCccc-ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEE
Q 031987           85 PPSKF-PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITW  135 (149)
Q Consensus        85 ~pg~f-~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW  135 (149)
                      -||+. +-| ....-+-+|+||+.-++.-|| +...+.+||++..|+|..|.-
T Consensus       100 lPGEvApsHrHsqsAlRFvveG~Ga~T~VdG-er~~M~~GDfilTP~w~wHdH  151 (351)
T COG3435         100 LPGEVAPSHRHNQSALRFVVEGKGAYTVVDG-ERTPMEAGDFILTPAWTWHDH  151 (351)
T ss_pred             cCcccCCcccccccceEEEEeccceeEeecC-ceeeccCCCEEEccCceeccC
Confidence            37766 445 458899999999999999888 799999999999999866543

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=90.75  E-value=0.36  Score=37.85  Aligned_cols=61  Identities=18%  Similarity=0.344  Sum_probs=41.0

Q ss_pred             eeeeEecCCccc-cccCC-CceEEEEEEeEEEEEE------------C--------------C------------cceEE
Q 031987           78 SWPKWGCPPSKF-PWTFT-ATETMYLLEGKVIVYV------------D--------------G------------REGSF  117 (149)
Q Consensus        78 ~~giWe~~pg~f-~~h~~-~dE~~yVLEG~v~vt~------------d--------------g------------g~~~~  117 (149)
                      ...+|-+.+|.. ++|++ .+=+..+|.|+=++..            .              +            ..-..
T Consensus       132 ~~~l~ig~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~  211 (251)
T PF13621_consen  132 SSNLWIGPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEV  211 (251)
T ss_dssp             EEEEEEE-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEE
T ss_pred             ccEEEEeCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEE
Confidence            346788888876 56775 5667777888876641            0              0            12467


Q ss_pred             EEcCCcEEEEcCCcEEEEEEc
Q 031987          118 EIGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus       118 ~i~aGD~v~~PkG~~~tW~v~  138 (149)
                      +++|||+++||+||.|.=+..
T Consensus       212 ~l~pGD~LfiP~gWwH~V~~~  232 (251)
T PF13621_consen  212 VLEPGDVLFIPPGWWHQVENL  232 (251)
T ss_dssp             EEETT-EEEE-TT-EEEEEES
T ss_pred             EECCCeEEEECCCCeEEEEEc
Confidence            899999999999999999988

...

>PRK15186 AraC family transcriptional regulator; Provisional

Probab=90.49  E-value=0.84  Score=38.80  Aligned_cols=46  Identities=15%  Similarity=0.164  Sum_probs=40.5

Q ss_pred             CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      ...-=++++..|.+++..++| +...+.+|.++++|++..++....+
T Consensus        36 ~~~~~li~v~~G~~~i~~~~g-~~l~i~~p~~~~~p~~~~~~~~~~~   81 (291)
T PRK15186         36 LLQSVLIKLTTGKISITTSSG-EYITASGPMLIFLAKDQTIHITMEE   81 (291)
T ss_pred             ecceEEEEeccceEEEEeCCC-ceEEeCCCeEEEEeCCcEEEEEecc
Confidence            345678999999999999888 6799999999999999999887664

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=89.60  E-value=4.9  Score=28.35  Aligned_cols=62  Identities=18%  Similarity=0.189  Sum_probs=42.4

Q ss_pred             eeeEecC--Ccccc-ccC---CCceEEEEEEeEEEEEECCc-----ceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           79 WPKWGCP--PSKFP-WTF---TATETMYLLEGKVIVYVDGR-----EGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        79 ~giWe~~--pg~f~-~h~---~~dE~~yVLEG~v~vt~dgg-----~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .++|..+  |..+. .|.   +.-.-..||+|++++..-++     ++...+.+|+..++++...|.=+-..+
T Consensus         3 tP~~t~~tlP~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~   75 (82)
T PF09313_consen    3 TPVWTAETLPAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD   75 (82)
T ss_dssp             ---BETTTS-GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred             CCcCChhhCcHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence            4566666  55553 332   35677899999999998554     478899999999999999988776554

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators

Probab=88.59  E-value=1.9  Score=32.95  Aligned_cols=45  Identities=20%  Similarity=0.328  Sum_probs=40.1

Q ss_pred             CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      ..+-=+|.|+.|+=++..++.  .+++.+|+.++.+.+...+-++.+
T Consensus        21 ~y~p~i~~vlQG~K~~~~g~~--~~~Y~~g~~lv~~~~lPv~~~v~~   65 (155)
T PF06719_consen   21 VYEPSICIVLQGSKRVHLGDQ--VFEYDAGQYLVSSVDLPVESEVVE   65 (155)
T ss_pred             ecCCeEEEEEeeeEEEEECCc--eEEecCCcEEEecCCCcEEEEEee
Confidence            345668999999999999977  999999999999999999999843

In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=88.29  E-value=0.34  Score=40.88  Aligned_cols=37  Identities=14%  Similarity=0.178  Sum_probs=23.6

Q ss_pred             CCCceEEEEEEeEEEEEECCcc-eEEEEcCCcEEEEcCCc
Q 031987           93 FTATETMYLLEGKVIVYVDGRE-GSFEIGTGDLVVFPKGM  131 (149)
Q Consensus        93 ~~~dE~~yVLEG~v~vt~dgg~-~~~~i~aGD~v~~PkG~  131 (149)
                      ++.++-+|||+|.+..  +|.+ +...+.||..++.|+|.
T Consensus        54 H~~~~~~~Vi~G~~~~--~~~~a~~~~l~~Gsy~~~PaG~   91 (251)
T PF14499_consen   54 HNADYRGTVISGELHN--GDPKAAAMWLPAGSYWFQPAGE   91 (251)
T ss_dssp             ESS-EEEEEEESEEEE--TTEE-----E-TTEEEEE-TT-
T ss_pred             eeeeEEEEEEEeEEEc--CCCcccceecCCCceEeccCCC
Confidence            4689999999997655  4441 23569999999999993

>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor

Probab=88.12  E-value=1.9  Score=35.64  Aligned_cols=46  Identities=17%  Similarity=0.235  Sum_probs=40.7

Q ss_pred             CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      -.|-.+.||+|+..-..+|.-+...+.|||....|+|..-+...++
T Consensus       118 ~ad~y~tIL~G~~~~~~~g~~~~evy~pGd~~~l~rg~a~~y~m~~  163 (216)
T PF04622_consen  118 WADDYFTILSGEQWAWSPGSLEPEVYKPGDSHHLPRGEAKQYQMPP  163 (216)
T ss_pred             EeeeEEEEEEEEEEEEcCCCCCceEeccCCEEEecCceEEEEEeCC
Confidence            3788999999999999998767888999999999999998888763

C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=88.06  E-value=1.7  Score=31.97  Aligned_cols=49  Identities=18%  Similarity=0.126  Sum_probs=38.2

Q ss_pred             Ccccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEE
Q 031987           86 PSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWD  136 (149)
Q Consensus        86 pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~  136 (149)
                      ...|++|  .+.+-+-||++|+++-.+.-| ....++|||+-.+-+|. +.|+
T Consensus        39 ~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G-~~~~l~~G~vq~m~AG~-Gi~H   89 (107)
T PF02678_consen   39 GAGFPMHPHRGFEIVTYVLEGELRHRDSLG-NRGVLRAGDVQWMTAGS-GIVH   89 (107)
T ss_dssp             TTEEEEEEECSEEEEEEEEESEEEEEETTS-EEEEEETTEEEEEE-TT-TEEE
T ss_pred             CCCCCCcCCCCceEEEEEecCEEEEECCCC-CeeEeCCCeEEEEeCCC-CceE
Confidence            3556554  567888899999999998877 77899999999999984 4444

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=88.04  E-value=3.4  Score=29.48  Aligned_cols=48  Identities=29%  Similarity=0.357  Sum_probs=36.7

Q ss_pred             CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc-CceEEE
Q 031987           93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI-EAVNKH  144 (149)
Q Consensus        93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~-e~vrK~  144 (149)
                      -+.+=++||++|++++  ++.  ...+.+|+++++..|...+.+.. +..|-.
T Consensus        18 ~~~~~~iyv~~G~~~v--~~~--~~~~~~~~~~~l~~g~~i~~~a~~~~a~~l   66 (104)
T PF05726_consen   18 PGHNAFIYVLEGSVEV--GGE--EDPLEAGQLVVLEDGDEIELTAGEEGARFL   66 (104)
T ss_dssp             TT-EEEEEEEESEEEE--TTT--TEEEETTEEEEE-SECEEEEEESSSSEEEE
T ss_pred             CCCEEEEEEEECcEEE--CCC--cceECCCcEEEECCCceEEEEECCCCcEEE
Confidence            4678899999999655  555  47899999999999999999888 555543

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]

Probab=87.34  E-value=3.5  Score=35.09  Aligned_cols=62  Identities=18%  Similarity=0.171  Sum_probs=43.5

Q ss_pred             eeeEecCCccc-cccCCCceEEEE-EEeEEEEEECCc--------ceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           79 WPKWGCPPSKF-PWTFTATETMYL-LEGKVIVYVDGR--------EGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~~~dE~~yV-LEG~v~vt~dgg--------~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ..+|+..+|.- .......|.|+| ++|.+++...|.        ...++=+|=|++++|.|...+-.-...
T Consensus        31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~  102 (270)
T COG3718          31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTD  102 (270)
T ss_pred             EEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecc
Confidence            56788888875 345566777665 899999999875        122333477999999998766554444

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=86.37  E-value=1.4  Score=37.26  Aligned_cols=65  Identities=17%  Similarity=0.189  Sum_probs=42.9

Q ss_pred             eEecCCccc-cc-cCCC-ceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           81 KWGCPPSKF-PW-TFTA-TETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        81 iWe~~pg~f-~~-h~~~-dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      +-.-+||.. ++ ..+. +-=.|||||++....++.  -++++|||.+.+.+-..--..--.+-+..|.+
T Consensus       186 ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn~d--wv~V~aGD~mwm~A~cpQacyagG~g~frYLl  253 (264)
T COG3257         186 IVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLNNN--WVPVEAGDYIWMGAYCPQACYAGGRGAFRYLL  253 (264)
T ss_pred             EEEecCCcccchhhhhhhhcceEEEecceEEeecCc--eEEeecccEEEeeccChhhhccCCCCceEEEE
Confidence            344456653 22 2232 334799999999999988  89999999999877555444444444444543

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=85.65  E-value=1.3  Score=42.33  Aligned_cols=59  Identities=19%  Similarity=0.369  Sum_probs=46.1

Q ss_pred             CChhhhhhcCC-----ceeeeEecCCccccccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEE
Q 031987           66 PPQSKLSELGV-----TSWPKWGCPPSKFPWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLV  125 (149)
Q Consensus        66 ps~~~L~~lGv-----~~~giWe~~pg~f~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v  125 (149)
                      .+.-+|..+|-     ...-.=+|.||..-+|.+  .|-.|+|++|++++.-||+ -.-.++.||++
T Consensus       553 HpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE-VVAILGKGDVF  618 (971)
T KOG0501|consen  553 HPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE-VVAILGKGDVF  618 (971)
T ss_pred             CcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc-EEEEeecCccc
Confidence            34556666662     223456899999888864  6999999999999999998 66789999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
1o5u_A	101	Crystal Structure Of A Duf861 Family Protein (Tm111		9e-16
1lkn_A	89	Solution Nmr Structure Of Protein Tm_1112 From Ther		1e-15
4axo_A	151	Structure Of The Clostridium Difficile Eutq Protein		3e-04

>pdb|1O5U|A Chain A, Crystal Structure Of A Duf861 Family Protein (Tm1112) From Thermotoga Maritima At 1.83 A Resolution Length = 101

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 60  VKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYV-DGREGSFE 118
           VKIEK  P+ KL EL V  WP W    S+F W +   ET Y+LEGKV V   DG+   + 
Sbjct: 15  VKIEKPTPE-KLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGK--KYV 71
Query: 119 IGTGDLVVFPKGMKITWDVIEAVNKHYSL 147
           I  GDLV FPKG++  W V+E V KHY+L
Sbjct: 72  IEKGDLVTFPKGLRCRWKVLEPVRKHYNL 100

>pdb|1LKN|A Chain A, Solution Nmr Structure Of Protein Tm_1112 From Thermotoga Maritima. Ontario Centre For Structural Proteomics Target Tm1112_1_89; Northeast Structural Genomics Consortium Target Vt74. Length = 89

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 60  VKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYV-DGREGSFE 118
           VKIEK  P+ KL EL V  WP W    S+F W +   ET Y+LEGKV V   DG+   + 
Sbjct: 3   VKIEKPTPE-KLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGK--KYV 59
Query: 119 IGTGDLVVFPKGMKITWDVIEAVNKHYSL 147
           I  GDLV FPKG++  W V+E V KHY+L
Sbjct: 60  IEKGDLVTFPKGLRCRWKVLEPVRKHYNL 88

>pdb|4AXO|A Chain A, Structure Of The Clostridium Difficile Eutq Protein Length = 151

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 80  PKWGC-----PPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKIT 134
           P+ GC       + F WT    E  Y+++G + + +DGR+ S    +G+L+  PKG KI 
Sbjct: 64  PRLGCGMMEMKETTFDWTLNYDEIDYVIDGTLDIIIDGRKVS--ASSGELIFIPKGSKIQ 121
Query: 135 WDV 137
           + V
Sbjct: 122 FSV 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	2e-32
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	2e-23
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	3e-04
3bcw_A	123	Uncharacterized protein; structural genomics, join	1e-19
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	5e-15
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	1e-14
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	1e-11
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	3e-05
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	4e-05
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	5e-05
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	3e-04
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	6e-05
1v70_A	105	Probable antibiotics synthesis protein; structural	1e-04
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	1e-04
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	2e-04
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	2e-04
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	2e-04
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	3e-04
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	4e-04
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	5e-04

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A Length = 101

 Score =  109 bits (275), Expect = 2e-32
 Identities = 43/100 (43%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 48  TTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVI 107
           +           VKIEK P   KL EL V  WP W    S+F W +   ET Y+LEGKV 
Sbjct: 3   SDKIHHHHHHMEVKIEK-PTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVE 61

Query: 108 VYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL 147
           V  +  +  + I  GDLV FPKG++  W V+E V KHY+L
Sbjct: 62  VTTEDGK-KYVIEKGDLVTFPKGLRCRWKVLEPVRKHYNL 100

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV} Length = 238

 Score = 91.0 bits (225), Expect = 2e-23
 Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 11/122 (9%)

Query: 31  KPTTPRVSKSKPVMASTTTT--TAATAEIFGVKIEKNPPQSK----LSELGVTSWPKWGC 84
           + + P  S    +      T  +     I    I   P                   W  
Sbjct: 118 QASGPDKSGITALDRLALLTPSSPPDPSIM---ISPLPQCRSNNLFEDTASTLRIGVWDS 174

Query: 85  PPSKF-PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNK 143
            P +         E M L+EG+V++ ++    S  + TGD V   +G    W     V K
Sbjct: 175 TPYERISRPHKIHELMNLIEGRVVLSLENGS-SLTVNTGDTVFVAQGAPCKWTSTGYVRK 233

Query: 144 HY 145
            Y
Sbjct: 234 FY 235

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV} Length = 238

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 9/118 (7%)

Query: 30  SKPTTPRVSKSK--PVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPS 87
            +PT   ++++   PV    TT      + F           +    G+  +       +
Sbjct: 3   PQPTVLLLARADLSPVGTEFTTGPIDAHDPFDSGRRTAFVDEQGIAAGIVEFGTALSVEA 62

Query: 88  KFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHY 145
                +  TE + +  G V +       S  + TG+  V  +G ++  D        +
Sbjct: 63  -----YPYTEMLVMHRGSVTLTSGT--DSVTLSTGESAVIGRGTQVRIDAQPESLWAF 113

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50} Length = 123

 Score = 78.0 bits (192), Expect = 1e-19
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 82  WGCPPSKFPWTFTAT-ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA 140
           W      F    T   E  +++EG+  +          +  GD  + P+G    W+V   
Sbjct: 54  WESTSGSFQSNTTGYIEYCHIIEGEARLVDPDGT-VHAVKAGDAFIMPEGYTGRWEVDRH 112

Query: 141 VNKHY 145
           V K Y
Sbjct: 113 VKKIY 117

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24 Length = 133

 Score = 66.2 bits (161), Expect = 5e-15
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 82  WGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV 141
                + FPWT    E   +LEG++ V  +G         GD++  PKG  I +    +V
Sbjct: 62  MQWDNAFFPWTLNYDEIDMVLEGELHVRHEGET--MIAKAGDVMFIPKGSSIEFGTPTSV 119

Query: 142 NKHY 145
              Y
Sbjct: 120 RFLY 123

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} Length = 151

 Score = 65.8 bits (160), Expect = 1e-14
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 82  WGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV 141
                + F WT    E  Y+++G + + +DGR       +G+L+  PKG KI + V +  
Sbjct: 71  MEMKETTFDWTLNYDEIDYVIDGTLDIIIDGR--KVSASSGELIFIPKGSKIQFSVPDYA 128

Query: 142 NKHY 145
              Y
Sbjct: 129 RFIY 132

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Length = 119

 Score = 56.9 bits (137), Expect = 1e-11
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 85  PPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKH 144
           P      T    + M +LEG++ V  DG   +   G G++V  PKG  +T    E     
Sbjct: 49  PGQSLTETMAVDDVMIVLEGRLSVSTDGE--TVTAGPGEIVYMPKGETVTIRSHEEGALT 106

Query: 145 Y 145
            
Sbjct: 107 A 107

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str} Length = 116

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 82  WGCPPSKFPWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA 140
           W   P  + +      ET  ++EG+  +Y        +IG G +V   KG+    +++ +
Sbjct: 47  WMAEPGIYNYAGRDLEETFVVVEGE-ALYSQADADPVKIGPGSIVSIAKGVPSRLEILSS 105

Query: 141 VNKHYSL 147
             K  ++
Sbjct: 106 FRKLATV 112

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Length = 162

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 83  GCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKG 130
           G   +++       E +Y+L GK  + ++  +  + I  GD V FP  
Sbjct: 56  GKESTEYHLHHYEEEAVYVLSGKGTLTMENDQ--YPIAPGDFVGFPCH 101

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 14/110 (12%), Positives = 35/110 (31%), Gaps = 5/110 (4%)

Query: 28  PKSKPTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPS 87
                  P  +    + +          ++  +   +     +   +             
Sbjct: 175 LAELTELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDH 234

Query: 88  KFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDV 137
              +    TET Y LEG++ ++ DG+E   ++  GD +  P     ++ +
Sbjct: 235 YHEYH---TETFYCLEGQMTMWTDGQE--IQLNPGDFLHVPANTVHSYRL 279

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 94  TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKG 130
              E + +L+GK+ + +DG    + + +GD    P G
Sbjct: 66  DTHEGILVLDGKLELTLDGER--YLLISGDYANIPAG 100

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Length = 133

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 94  TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMK 132
              E  Y+L G+ + + +G++    I  GD+     G  
Sbjct: 77  GEFEIYYILLGEGVFHDNGKD--VPIKAGDVCFTDSGES 113

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 97  ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM 131
           +  Y LEG+V+V V   E    +  G     P G 
Sbjct: 51  KVYYALEGEVVVRVGEEE--ALLAPGMAAFAPAGA 83

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 97  ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMK 132
           E   +L GK  + +DG +   E+  GD +      K
Sbjct: 50  EIYGILSGKGFITIDGEK--IELQAGDWLRIAPDGK 83

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 90  PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMK 132
            W+F       + EG+V+V +     + E+G+GD+   P G++
Sbjct: 267 TWSFPGACAFQVQEGRVVVQIGDYA-ATELGSGDVAFIPGGVE 308

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 97  ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMK 132
           + +++++G     VDG      +  G L+   +G  
Sbjct: 46  QWLFVVDGAGEAIVDGHT--QALQAGSLIAIERGQA 79

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 22  PLIIPIPKSKPTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPK 81
           PL    P+ +     V  +  ++      +    E+     ++ P    ++   +   P 
Sbjct: 185 PLASATPQGQTAKIEVPHTHNLLGQQPLVSLGGNELRLASAKEFPGSFNMTGALIHLEPG 244

Query: 82  WGCPPSKFPWTFTATETMYLLEGKVIVYV---DGREGSFEIGTGDLVVFPKGM 131
                    W   A E  Y+L+G++ + V   +G+     +  GD+   PKG 
Sbjct: 245 AMRQLH---WHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGY 294

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 91  WTFTATETMYLLEGKVIVYV---DGREGSFEIGTGDLVVFPKGM 131
           W   A E  Y++EG+  + +   +G+    ++  G L  FP+G 
Sbjct: 69  WHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGW 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 36/189 (19%), Positives = 55/189 (29%), Gaps = 70/189 (37%)

Query: 11  SLLVL----------LLSLLSPLIIPIPKSKPTTPRVSKSKPVMASTTT----------- 49
            LLVL            +L   +++       TT     +  + A+TTT           
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILL-------TTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 50  TTAATAEIF----GVKIEKNPPQSK------LSELG------VTSWPKWGCPPSKFPWTF 93
           T      +       + +  P +        LS +       + +W  W           
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW---KHVNCDKL 355

Query: 94  TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKIT-------W------DVIEA 140
           T      L    V+   + R+  F+     L VFP    I        W      DV+  
Sbjct: 356 TTIIESSL---NVLEPAEYRK-MFD----RLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 141 VNK--HYSL 147
           VNK   YSL
Sbjct: 408 VNKLHKYSL 416

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 91  WTFTATETMYLLEGKVIVYV---DGREGSFEIGTGDLVVFPKGM 131
           W     E  Y + GK  + V   DG   +F    GD+   P  M
Sbjct: 274 WHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAM 317

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Length = 476

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 91  WTFTATETMYLLEGKVIVYVDGREG----SFEIGTGDLVVFPKGM 131
           +   A   +Y L G+ ++ V    G      E+  G +++ P+  
Sbjct: 355 YNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNF 399

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 97  ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMK 132
             +++L+GK+ V  +  E    +  G  +       
Sbjct: 70  HEIFVLKGKLTVLKEQGE--ETVEEGFYIFVEPNEI 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	99.91
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	99.9
3bcw_A	123	Uncharacterized protein; structural genomics, join	99.87
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	99.78
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	99.65
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	99.59
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	99.53
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.49
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	98.91
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	98.9
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	98.9
1v70_A	105	Probable antibiotics synthesis protein; structural	98.89
3h8u_A	125	Uncharacterized conserved protein with double-STR	98.88
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	98.87
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	98.86
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	98.84
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	98.84
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	98.8
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	98.79
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	98.78
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.77
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.76
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.76
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	98.75
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.74
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	98.72
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	98.7
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	98.7
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.67
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	98.67
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.67
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	98.66
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	98.64
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.64
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	98.64
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	98.61
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.61
4i4a_A	128	Similar to unknown protein; structural genomics, P	98.59
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	98.59
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	98.58
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	98.58
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.57
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.57
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.56
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.56
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	98.52
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	98.52
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.51
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	98.5
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	98.5
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	98.49
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.48
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.48
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.47
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.47
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.47
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	98.46
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.45
1sef_A	274	Conserved hypothetical protein; structural genomic	98.45
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.44
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.43
1sef_A	274	Conserved hypothetical protein; structural genomic	98.41
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.4
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.37
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.37
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	98.36
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	98.32
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.29
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	98.28
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.27
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.26
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	98.25
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	98.22
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	98.22
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	98.21
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.11
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.05
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.01
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.01
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.0
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	97.96
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	97.95
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	97.95
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	97.94
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	97.93
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	97.91
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	97.87
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	97.84
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	97.78
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	97.77
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	97.76
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	97.74
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	97.72
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	97.71
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	97.66
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	97.65
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	97.64
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	97.63
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	97.6
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	97.58
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	97.58
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	97.51
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	97.51
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	97.5
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	97.48
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	97.47
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	97.45
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	97.34
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	97.29
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	97.18
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	97.11
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	97.11
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	97.01
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	96.98
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	96.96
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	96.92
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	96.92
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	96.87
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	96.77
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.6
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	96.39
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	95.73
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	95.39
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	94.93
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	94.47
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	94.32
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	94.17
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	93.54
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	92.89
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	92.66
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	92.61
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	92.54
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	92.39
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	91.78
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	91.64
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	91.0
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	90.37
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	90.25
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	90.17
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	89.64
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	89.09
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	88.93
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	88.0
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	87.79
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	87.25
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	86.7
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	85.99
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	85.46
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	85.35
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	84.71
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	84.3
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	83.95
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	83.39
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	83.31
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	83.26
4diq_A	489	Lysine-specific demethylase NO66; structural genom	83.21
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	82.61
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	81.6
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	81.56
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	81.16
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	80.7
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	80.26
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	80.09
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	80.06

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=99.91  E-value=2.2e-24  Score=176.87  Aligned_cols=112  Identities=21%  Similarity=0.379  Sum_probs=99.5

Q ss_pred             ceeeecCCCCCCCCcccCCCcccccccCCccccceeeeEEEeeCCChhhhhhcCCceeeeEecCCccc-cccCCCceEEE
Q 031987           22 PLIIPIPKSKPTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKF-PWTFTATETMY  100 (149)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~ps~~~L~~lGv~~~giWe~~pg~f-~~h~~~dE~~y  100 (149)
                      |-+++|+.+..+.|. ..|+++++.++++.+..+..+.-            ..|..+||+|+|+||.+ .++|+++|+||
T Consensus       125 ~~~~~i~~~~~l~P~-~~p~p~~~l~G~P~~~~~~~~~~------------~~g~~~~GiW~~tpG~~~~~~~~~~E~~~  191 (238)
T 3myx_A          125 SGITALDRLALLTPS-SPPDPSIMISPLPQCRSNNLFED------------TASTLRIGVWDSTPYERISRPHKIHELMN  191 (238)
T ss_dssp             CSEEEECTTCCCEEE-CCCCGGGBSSCCCCEEEEEEEEC------------SSSSCEEEEEEECCEEBCCEECSSCEEEE
T ss_pred             CccEEecCCCCCCCC-CCCChhheecCCchheeeEEEEC------------CCCCEEEeEEEeCCCEEECCcCCCCEEEE
Confidence            457899999999997 78999999999988777665431            25778899999999874 57889999999


Q ss_pred             EEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987          101 LLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus       101 VLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      ||||+++++.++| +.++++|||+++||+|+.++|++.+++||+|+|
T Consensus       192 ILeG~v~lt~~~G-~~~~~~aGD~~~~P~G~~~tWev~e~vrK~Yvi  237 (238)
T 3myx_A          192 LIEGRVVLSLENG-SSLTVNTGDTVFVAQGAPCKWTSTGYVRKFYAV  237 (238)
T ss_dssp             EEECCEEEEETTS-CEEEECTTCEEEECTTCEEEEEESSCEEEEEEE
T ss_pred             EEEeEEEEEeCCC-CEEEECCCCEEEECCCCEEEEEECccEEEEEEe
Confidence            9999999999988 889999999999999999999999999999997

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=6.6e-24  Score=157.59  Aligned_cols=76  Identities=18%  Similarity=0.315  Sum_probs=70.7

Q ss_pred             hhcCCceeeeEecCCccccccCCCc-eEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEec
Q 031987           72 SELGVTSWPKWGCPPSKFPWTFTAT-ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE  148 (149)
Q Consensus        72 ~~lGv~~~giWe~~pg~f~~h~~~d-E~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~  148 (149)
                      ...|...+|+|+|+||+|+|+++.+ |+||||||+++++.+|| +.++++|||+++||+|++|+|++.+++||+|++-
T Consensus        37 ~~~g~~~~GvWe~tPG~~~~~~~~~~E~~~iLeG~~~lt~ddG-~~~~l~aGD~~~~P~G~~gtWev~e~vrK~~~~~  113 (116)
T 3es4_A           37 DVENGTIVAVWMAEPGIYNYAGRDLEETFVVVEGEALYSQADA-DPVKIGPGSIVSIAKGVPSRLEILSSFRKLATVI  113 (116)
T ss_dssp             SSSSCCEEEEEEECSEEEEECCCSEEEEEEEEECCEEEEETTC-CCEEECTTEEEEECTTCCEEEEECSCEEEEEEEE
T ss_pred             CCCCCEEEEEEecCCceeECeeCCCcEEEEEEEeEEEEEeCCC-eEEEECCCCEEEECCCCeEEEEEeEEEeEEEEEe
Confidence            4467778999999999999998866 99999999999999998 7899999999999999999999999999999873

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=99.87  E-value=3.2e-22  Score=148.25  Aligned_cols=111  Identities=20%  Similarity=0.302  Sum_probs=90.3

Q ss_pred             ceeeecCCCCCCCCcccCCCcccccccCCccccceeeeEEEeeCCChhhhhhcCCceeeeEecCCccccccCCC-ceEEE
Q 031987           22 PLIIPIPKSKPTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTA-TETMY  100 (149)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~ps~~~L~~lGv~~~giWe~~pg~f~~h~~~-dE~~y  100 (149)
                      +.+++|+.++.+.|+...  +++..++++....+..+            ..+.|...+|+|+++||.+.+|+++ +|++|
T Consensus         8 ~~~~~~~~~~~~~p~~~~--~~~~i~G~P~~~~~~~~------------~~~~g~~~~g~w~~~pG~~~~~~~~~~E~~~   73 (123)
T 3bcw_A            8 SRLVRIDTGPMINPVAGK--PSRPIAGDASFRTVTAF------------EGGQGKVESGVWESTSGSFQSNTTGYIEYCH   73 (123)
T ss_dssp             TSCEECCCSSCSSCEEEC--CSSEEEECCCEEEEEEE------------EETTTTEEEEEEEEEEEEEECCCTTEEEEEE
T ss_pred             hheEEccccCCCCCccCC--cccEEcCCCCeeEEEEE------------eCCCCCEEEEEEEECCCceeeEcCCCcEEEE
Confidence            446677776667777655  55666666555544321            1245677899999999999999888 99999


Q ss_pred             EEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987          101 LLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus       101 VLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      ||||+++++.+|+ +.++++|||+++||+|..|+|++.+++||+|++
T Consensus        74 Vl~G~~~l~~~~g-~~~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv~  119 (123)
T 3bcw_A           74 IIEGEARLVDPDG-TVHAVKAGDAFIMPEGYTGRWEVDRHVKKIYFV  119 (123)
T ss_dssp             EEEEEEEEECTTC-CEEEEETTCEEEECTTCCCEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEEECCC-eEEEECCCCEEEECCCCeEEEEECCceeEEEEE
Confidence            9999999999776 689999999999999999999999999999987

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=99.78  E-value=1.5e-18  Score=124.29  Aligned_cols=86  Identities=44%  Similarity=0.847  Sum_probs=80.1

Q ss_pred             EEeeCCChhhhhhcCCceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           61 KIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        61 ~i~~~ps~~~L~~lGv~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      +++++...++|.+.|...+|.|+++||.+++|.+.+|++|||+|+++++++++ +.+.++|||+++||+|..++|++.++
T Consensus        15 ~~~~~~~~~~l~~~g~~~~~~~~~~pg~~~~hH~~~E~~~Vl~G~~~~~i~~g-~~~~l~~GD~i~ip~g~~H~~~n~~~   93 (101)
T 1o5u_A           15 VKIEKPTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDG-KKYVIEKGDLVTFPKGLRCRWKVLEP   93 (101)
T ss_dssp             CEEECCCHHHHHHHTGGGSCEEEECSEEEEEECSSCEEEEEEEEEEEEEETTC-CEEEEETTCEEEECTTCEEEEEEEEE
T ss_pred             EEecCCCccEEeeCCceEEEEEEeCCCcccccCCceEEEEEEeCEEEEEECCC-CEEEECCCCEEEECCCCcEEEEeCCC
Confidence            35778889999999999999999999999998889999999999999999844 58999999999999999999999999


Q ss_pred             eEEEEEe
Q 031987          141 VNKHYSL  147 (149)
Q Consensus       141 vrK~Yvi  147 (149)
                      ++|+|++
T Consensus        94 ~~~~yv~  100 (101)
T 1o5u_A           94 VRKHYNL  100 (101)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEE
Confidence            9999986

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=99.65  E-value=6.8e-16  Score=115.12  Aligned_cols=71  Identities=25%  Similarity=0.370  Sum_probs=66.1

Q ss_pred             CceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEec
Q 031987           76 VTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE  148 (149)
Q Consensus        76 v~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~  148 (149)
                      ....++|+++||.++||++.+|++|||||+++++++|.  .++++|||+++||+|..|+|++.+++|++|++-
T Consensus        56 ~~~~~~~~~~pG~~~~h~~~~E~~~VLeG~~~l~~~g~--~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~v~~  126 (133)
T 2pyt_A           56 SMAAGFMQWDNAFFPWTLNYDEIDMVLEGELHVRHEGE--TMIAKAGDVMFIPKGSSIEFGTPTSVRFLYVAW  126 (133)
T ss_dssp             SSEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEETTE--EEEEETTCEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             cEEEEEEEECCCCccccCCCCEEEEEEECEEEEEECCE--EEEECCCcEEEECCCCEEEEEeCCCEEEEEEEc
Confidence            45688999999988899999999999999999999966  899999999999999999999999999999874

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=99.59  E-value=3.9e-15  Score=114.48  Aligned_cols=71  Identities=25%  Similarity=0.474  Sum_probs=66.0

Q ss_pred             CceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEec
Q 031987           76 VTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLE  148 (149)
Q Consensus        76 v~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~  148 (149)
                      ..++|+|+++.+.++||++++|++|||||+++++++|.  .+.++|||+++||+|..++|++.++.++.|++-
T Consensus        65 ~~s~g~~~~e~~~~~~~~~~eE~~yVLeG~~~l~i~g~--~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V~~  135 (151)
T 4axo_A           65 RLGCGMMEMKETTFDWTLNYDEIDYVIDGTLDIIIDGR--KVSASSGELIFIPKGSKIQFSVPDYARFIYVTY  135 (151)
T ss_dssp             SCEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEETTE--EEEEETTCEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             cEEEEEEEEcCccccEeCCCcEEEEEEEeEEEEEECCE--EEEEcCCCEEEECCCCEEEEEeCCCEEEEEEEC
Confidence            67799999997788999999999999999999999665  899999999999999999999999999999874

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=99.53  E-value=3.7e-14  Score=116.16  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=61.7

Q ss_pred             CCceeeeEecCCcccc-ccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           75 GVTSWPKWGCPPSKFP-WTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        75 Gv~~~giWe~~pg~f~-~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      +..+.|+|.+ .+++. +.+++||++|||||++++++ +| ++++++|||+++||+|+.++|++.+++||+|+.
T Consensus        45 ~~~~~G~~~~-~g~~~v~~~p~dE~~~VleG~~~lt~-~g-~~~~~~~Gd~~~ip~G~~~~w~~~~~~~~~y~~  115 (238)
T 3myx_A           45 QGIAAGIVEF-GTALSVEAYPYTEMLVMHRGSVTLTS-GT-DSVTLSTGESAVIGRGTQVRIDAQPESLWAFCA  115 (238)
T ss_dssp             TSEEEEEEEE-CSEEEESSCSSEEEEEEEESEEEEEE-TT-EEEEEETTCEEEECTTCCEEEEECTTEEEEEEE
T ss_pred             CCeEEEEEEe-ccccccccCCCcEEEEEEEeEEEEEC-CC-eEEEEcCCCEEEECCCCEEEEEecCCeEEEEEe
Confidence            3445788888 77765 47889999999999999999 45 699999999999999999999999999999985

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.49  E-value=5e-13  Score=97.57  Aligned_cols=73  Identities=26%  Similarity=0.399  Sum_probs=64.5

Q ss_pred             CCceeeeEecCCcc-ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc-CceEEEEEecC
Q 031987           75 GVTSWPKWGCPPSK-FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI-EAVNKHYSLEK  149 (149)
Q Consensus        75 Gv~~~giWe~~pg~-f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~-e~vrK~Yvi~~  149 (149)
                      +..+.+.|+.+||. ++||.+.+|++|||||+++++.+|.  .+++++||+++||+|..|+|+.. ++.|++|++-|
T Consensus        38 ~~~~~~~~~~~pG~~~~~H~~~~E~~~Vl~G~~~~~~~g~--~~~l~~GD~v~ip~g~~H~~~~~~~~~~~l~v~~P  112 (119)
T 3lwc_A           38 GPITIGYGRYAPGQSLTETMAVDDVMIVLEGRLSVSTDGE--TVTAGPGEIVYMPKGETVTIRSHEEGALTAYVTYP  112 (119)
T ss_dssp             CCCEEEEEEECTTCEEEEECSSEEEEEEEEEEEEEEETTE--EEEECTTCEEEECTTCEEEEEEEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEECCCCCcCccCCCCEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCEEEEEcCCCCeEEEEEECC
Confidence            34557899999996 5788899999999999999999765  89999999999999999999998 78999998743

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=98.91  E-value=1.7e-09  Score=75.18  Aligned_cols=57  Identities=19%  Similarity=0.367  Sum_probs=46.8

Q ss_pred             CccccccCC-C-ceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEE
Q 031987           86 PSKFPWTFT-A-TETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNK  143 (149)
Q Consensus        86 pg~f~~h~~-~-dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK  143 (149)
                      ||.+.+|++ . +|++||++|++++..+|+ +.+.+++||++++|+|..|.|...+..+-
T Consensus        37 ~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~-~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~   95 (107)
T 2i45_A           37 LGDYGWHTHGYSDKVLFAVEGDMAVDFADG-GSMTIREGEMAVVPKSVSHRPRSENGCSL   95 (107)
T ss_dssp             EEECCCBCC--CCEEEEESSSCEEEEETTS-CEEEECTTEEEEECTTCCEEEEEEEEEEE
T ss_pred             CCCCcceeCCCCCEEEEEEeCEEEEEECCC-cEEEECCCCEEEECCCCcEeeEeCCCeEE
Confidence            344555544 3 899999999999999993 38999999999999999999999766543

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=98.90  E-value=8.9e-09  Score=73.38  Aligned_cols=66  Identities=23%  Similarity=0.224  Sum_probs=53.8

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      .-.+...||.. ++|. +.+|++||++|+++++.+|+  .+.+++||+++||+|..|.+...++.+-...
T Consensus        38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~--~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~  105 (114)
T 3fjs_A           38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA--QRRLHQGDLLYLGAGAAHDVNAITNTSLLVT  105 (114)
T ss_dssp             EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE--EEEECTTEEEEECTTCCEEEEESSSEEEEEE
T ss_pred             EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE--EEEECCCCEEEECCCCcEEEEeCCCcEEEEE
Confidence            44456666654 4554 46899999999999999888  8999999999999999999999987655443

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=98.90  E-value=1.5e-08  Score=70.59  Aligned_cols=67  Identities=16%  Similarity=0.026  Sum_probs=55.2

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      ...+...||.. ++|. +.+|++||++|++++..+|+  .+.+++||++++|+|..|.+...++.+-..++
T Consensus        36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~v~  104 (116)
T 2pfw_A           36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV--IKVLTAGDSFFVPPHVDHGAVCPTGGILIDTF  104 (116)
T ss_dssp             EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTE--EEEECTTCEEEECTTCCEEEEESSCEEEEEEE
T ss_pred             EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCE--EEEeCCCCEEEECcCCceeeEeCCCcEEEEEE
Confidence            45566677753 4554 48999999999999999877  89999999999999999999999877655554

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=98.89  E-value=9.9e-09  Score=69.00  Aligned_cols=67  Identities=16%  Similarity=0.158  Sum_probs=53.1

Q ss_pred             eeeEecCCccc-cccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEEe
Q 031987           79 WPKWGCPPSKF-PWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYSL  147 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yvi  147 (149)
                      ...+...||.. ++|++  .+|++||++|++++..+|+  .+.+++||++++|+|..|.|....  +.+-.+++
T Consensus        30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~  101 (105)
T 1v70_A           30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE--EALLAPGMAAFAPAGAPHGVRNESASPALLLVVT  101 (105)
T ss_dssp             EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE--EEEECTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEe
Confidence            45566667653 55653  4789999999999999887  899999999999999999999864  45555543

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=98.88  E-value=1.2e-08  Score=72.39  Aligned_cols=62  Identities=11%  Similarity=0.072  Sum_probs=49.4

Q ss_pred             eeeeEecCCccc-cccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           78 SWPKWGCPPSKF-PWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        78 ~~giWe~~pg~f-~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ....+...||.. ++|++  .+|++||++|++++.++|+ +.+.+++||++++|+|..|.|.....
T Consensus        40 ~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~-~~~~l~~Gd~~~i~~~~~H~~~n~~~  104 (125)
T 3h8u_A           40 VVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNG-IVTHLKAGDIAIAKPGQVHGAMNSGP  104 (125)
T ss_dssp             EEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTT-CEEEEETTEEEEECTTCCCEEEECSS
T ss_pred             EEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCC-eEEEeCCCCEEEECCCCEEEeEeCCC
Confidence            344577777764 45543  5899999999999999444 48999999999999999999998643

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=98.87  E-value=9.9e-09  Score=76.41  Aligned_cols=66  Identities=21%  Similarity=0.259  Sum_probs=53.3

Q ss_pred             eeeEecCCcc--cccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCC-cEEEEEEc--CceEEEEE
Q 031987           79 WPKWGCPPSK--FPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKG-MKITWDVI--EAVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~--f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG-~~~tW~v~--e~vrK~Yv  146 (149)
                      ...+...||.  .++|  ...+|++|||+|++++..+|+  .+.+++||+++||+| ..|.|...  ++++-.++
T Consensus        48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~--~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v  120 (162)
T 3l2h_A           48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEND--QYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVI  120 (162)
T ss_dssp             EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTE--EEEECTTCEEEECTTSCCEEEECCSSSCEEEEEE
T ss_pred             EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCE--EEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEE
Confidence            4457777876  3445  457999999999999999988  899999999999998 99999984  45554444

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=98.86  E-value=1.8e-08  Score=71.28  Aligned_cols=67  Identities=13%  Similarity=0.084  Sum_probs=54.7

Q ss_pred             eeeEecCCccc-cccCC-CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc-eEEEEEe
Q 031987           79 WPKWGCPPSKF-PWTFT-ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA-VNKHYSL  147 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~~-~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~-vrK~Yvi  147 (149)
                      ...+...||.. ++|.+ .+|++||++|++++..+|+  .+.+++||++++|+|..|.++..+. .+-+.++
T Consensus        43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~l~v~  112 (126)
T 4e2g_A           43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEE--TRVLRPGMAYTIPGGVRHRARTFEDGCLVLDIF  112 (126)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTE--EEEECTTEEEEECTTCCEEEECCTTCEEEEEEE
T ss_pred             EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCE--EEEeCCCCEEEECCCCcEEeEECCCCEEEEEEE
Confidence            45567777763 55643 6999999999999999887  8999999999999999999999877 5544444

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=98.84  E-value=3.1e-08  Score=67.91  Aligned_cols=68  Identities=13%  Similarity=0.158  Sum_probs=53.5

Q ss_pred             ceeeeEecCCccc-ccc--CC--CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEE
Q 031987           77 TSWPKWGCPPSKF-PWT--FT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYS  146 (149)
Q Consensus        77 ~~~giWe~~pg~f-~~h--~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yv  146 (149)
                      .....+...||.. ++|  ++  .+|++||++|++++..+++  .+.+++||++++|+|..|.|....  +.+-.++
T Consensus        21 ~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v   95 (113)
T 2gu9_A           21 VQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGH--TQALQAGSLIAIERGQAHEIRNTGDTPLKTVNF   95 (113)
T ss_dssp             EEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTE--EEEECTTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             EEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCE--EEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            3455667777753 344  43  6899999999999999887  899999999999999999999864  4544444

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=98.84  E-value=3.5e-08  Score=68.64  Aligned_cols=66  Identities=14%  Similarity=0.267  Sum_probs=54.1

Q ss_pred             eeeEecCCcc-ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           79 WPKWGCPPSK-FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~-f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      ...+...||. +++|. +.+|++||++|++++..+|+  .+.+++||++++|+|..|.|+..++.+-.++
T Consensus        42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v  109 (115)
T 1yhf_A           42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQE--TYRVAEGQTIVMPAGIPHALYAVEAFQMLLV  109 (115)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTE--EEEEETTCEEEECTTSCEEEEESSCEEEEEE
T ss_pred             EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCCEEEEECCCceEEEE
Confidence            3445666665 35564 47999999999999999887  8999999999999999999999887665544

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=98.80  E-value=2.4e-08  Score=75.55  Aligned_cols=68  Identities=15%  Similarity=0.111  Sum_probs=54.4

Q ss_pred             eeeeEecCCccc--cccC--CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCC--cEEEEEEc--CceEEEEEe
Q 031987           78 SWPKWGCPPSKF--PWTF--TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKG--MKITWDVI--EAVNKHYSL  147 (149)
Q Consensus        78 ~~giWe~~pg~f--~~h~--~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG--~~~tW~v~--e~vrK~Yvi  147 (149)
                      ....++..||..  .+|+  ..+|++|||+|++++..+++  .+.+++||+++||+|  ..|.|...  ++++-.++.
T Consensus        44 ~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~--~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~  119 (163)
T 3i7d_A           44 GVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG--EHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVG  119 (163)
T ss_dssp             EEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE--EEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEE
T ss_pred             EEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE--EEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEE
Confidence            355677778773  3454  45799999999999999988  899999999999999  99999984  456555543

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=98.79  E-value=3.2e-08  Score=69.21  Aligned_cols=63  Identities=8%  Similarity=0.102  Sum_probs=50.2

Q ss_pred             EecCCcc-ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           82 WGCPPSK-FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        82 We~~pg~-f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      +...++. .+.|. +.+|++||++|++++..+|.  .+.+++||+++||+|..|.++..++.+-..+
T Consensus        43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~--~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~i  107 (114)
T 2ozj_A           43 FSFADGESVSEEEYFGDTLYLILQGEAVITFDDQ--KIDLVPEDVLMVPAHKIHAIAGKGRFKMLQI  107 (114)
T ss_dssp             EEEETTSSCCCBCCSSCEEEEEEEEEEEEEETTE--EEEECTTCEEEECTTCCBEEEEEEEEEEEEE
T ss_pred             EEECCCCccccEECCCCeEEEEEeCEEEEEECCE--EEEecCCCEEEECCCCcEEEEeCCCcEEEEE
Confidence            3334443 34443 57999999999999999887  8999999999999999999998876654443

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=98.78  E-value=5.7e-08  Score=73.98  Aligned_cols=67  Identities=12%  Similarity=0.072  Sum_probs=54.9

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC---ceEEEEEe
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE---AVNKHYSL  147 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e---~vrK~Yvi  147 (149)
                      ...++..||.. ++|+ ..+|++||++|++++.++|+  .+.+++||+++||+|..|.|....   +++-.+++
T Consensus        58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~--~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~  129 (167)
T 3ibm_A           58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR--VEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIV  129 (167)
T ss_dssp             EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE--EEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEE
T ss_pred             EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEE
Confidence            45677778764 3443 58999999999999999988  899999999999999999999865   56655554

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.77  E-value=2.9e-08  Score=68.03  Aligned_cols=68  Identities=15%  Similarity=0.146  Sum_probs=53.4

Q ss_pred             eeeEecCCccc-cccCCC--ceE-EEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           79 WPKWGCPPSKF-PWTFTA--TET-MYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~~~--dE~-~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      ...+...||.. ++|++.  .|+ +||++|++++..+++ +.+.+++||++++|+|..|.+...+..+-..++
T Consensus        35 ~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~-~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~~~  106 (110)
T 2q30_A           35 IVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGD-AVIPAPRGAVLVAPISTPHGVRAVTDMKVLVTI  106 (110)
T ss_dssp             EEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGG-CEEEECTTEEEEEETTSCEEEEESSSEEEEEEE
T ss_pred             EEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCC-EEEEECCCCEEEeCCCCcEEEEEcCCcEEEEEE
Confidence            45566677654 566553  587 899999999999843 489999999999999999999998886544443

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.76  E-value=4.8e-08  Score=75.94  Aligned_cols=69  Identities=16%  Similarity=0.041  Sum_probs=57.1

Q ss_pred             CceeeeEecCC-ccc--c-ccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc--eEEEEE
Q 031987           76 VTSWPKWGCPP-SKF--P-WTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA--VNKHYS  146 (149)
Q Consensus        76 v~~~giWe~~p-g~f--~-~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~--vrK~Yv  146 (149)
                      ...+++-+..| |..  + .+...+|++|||+|+++++++|.  .+.+++||+++||+|..|+|+....  .|-+|+
T Consensus        87 ~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g~--~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A           87 YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKN--KFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEETTE--EEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEECCE--EEEEcCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            45566778889 653  2 34568999999999999999887  9999999999999999999999754  566665

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.76  E-value=2.3e-08  Score=71.23  Aligned_cols=48  Identities=13%  Similarity=0.203  Sum_probs=43.8

Q ss_pred             ccCCCceEEEEEEeEEEEEECCcceE--EEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           91 WTFTATETMYLLEGKVIVYVDGREGS--FEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        91 ~h~~~dE~~yVLEG~v~vt~dgg~~~--~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .|.+.+|++|||+|+++++.+|+  .  +.+++||+++||+|..|+|.....
T Consensus        49 ~~~~~~E~~~Vl~G~~~l~~~~~--~~~~~l~~Gd~i~ipa~~~H~~~n~~~   98 (112)
T 2opk_A           49 YDSPQDEWVMVVSGSAGIECEGD--TAPRVMRPGDWLHVPAHCRHRVAWTDG   98 (112)
T ss_dssp             BCCSSEEEEEEEESCEEEEETTC--SSCEEECTTEEEEECTTCCEEEEEECS
T ss_pred             ccCCccEEEEEEeCeEEEEECCE--EEEEEECCCCEEEECCCCcEEEEeCCC
Confidence            45678999999999999999998  5  999999999999999999998764

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=98.75  E-value=3.2e-08  Score=68.05  Aligned_cols=66  Identities=12%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             eeEecCCccc-cccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEE
Q 031987           80 PKWGCPPSKF-PWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHY  145 (149)
Q Consensus        80 giWe~~pg~f-~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Y  145 (149)
                      ..++..||.. .+|.+  .+|++||++|+++++.+|+.+.+.+++||++++|+|..|.+....  +++-.+
T Consensus        21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~   91 (97)
T 2fqp_A           21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVE   91 (97)
T ss_dssp             EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEEECTTCEEEEECCSSSCEEEEE
T ss_pred             EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEE
Confidence            3466667653 45543  357999999999999988423799999999999999999999865  454433

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.74  E-value=3.4e-08  Score=66.82  Aligned_cols=55  Identities=20%  Similarity=0.412  Sum_probs=46.3

Q ss_pred             ccccccCC-C-ceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEE
Q 031987           87 SKFPWTFT-A-TETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNK  143 (149)
Q Consensus        87 g~f~~h~~-~-dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK  143 (149)
                      +.+++|++ . +|++||++|++++..+|+  .+.+++||++++|+|..|.+...+..+-
T Consensus        40 ~~~~~H~H~~~~e~~~v~~G~~~~~~~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~   96 (102)
T 3d82_A           40 GEFVWHEHADTDEVFIVMEGTLQIAFRDQ--NITLQAGEMYVIPKGVEHKPMAKEECKI   96 (102)
T ss_dssp             EECCCBCCTTCCEEEEEEESEEEEECSSC--EEEEETTEEEEECTTCCBEEEEEEEEEE
T ss_pred             CCCCceeCCCCcEEEEEEeCEEEEEECCE--EEEEcCCCEEEECCCCeEeeEcCCCCEE
Confidence            34555544 4 899999999999999988  8999999999999999999998765443

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=98.72  E-value=1e-07  Score=72.56  Aligned_cols=66  Identities=9%  Similarity=0.026  Sum_probs=51.9

Q ss_pred             eeeEecCCccc-c---ccC-CCceEEEEEEeEEEEEECC----cceEEEEcCCcEEEEcCCcEEEEEEc---CceEEEEE
Q 031987           79 WPKWGCPPSKF-P---WTF-TATETMYLLEGKVIVYVDG----REGSFEIGTGDLVVFPKGMKITWDVI---EAVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f-~---~h~-~~dE~~yVLEG~v~vt~dg----g~~~~~i~aGD~v~~PkG~~~tW~v~---e~vrK~Yv  146 (149)
                      ...+...||.. .   +|. +.+|++||++|++++..+|    .  .+.+++||+++||+|..|.|...   ++.+-..+
T Consensus       119 ~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~--~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~l~v  196 (198)
T 2bnm_A          119 PLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK--EALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAV  196 (198)
T ss_dssp             EEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE--EEEECTTCEEEECTTCCEEEEESTTSCCEEEEEE
T ss_pred             EEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc--cEEECCCCEEEeCCCCceEEEecCCCCCeEEEEE
Confidence            44456667653 2   443 4689999999999999998    6  89999999999999999999987   45554443

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=98.70  E-value=3.3e-08  Score=71.04  Aligned_cols=66  Identities=21%  Similarity=0.361  Sum_probs=51.2

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEE--ECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEE
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVY--VDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt--~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yv  146 (149)
                      ...++..||.. ++|+ +..|++||++|++++.  .+|+  .+.+++||++++|+|..|.|....  +.+-.++
T Consensus        41 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i  112 (145)
T 3ht1_A           41 LTEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGR--TEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVV  112 (145)
T ss_dssp             EEEEEEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTE--EEEECTTCEEEECTTCCBEEECCTTCCEEEEEE
T ss_pred             EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEeECCE--EEEECCCCEEEECCCCeEEeEcCCCCCEEEEEE
Confidence            44566667653 4554 3678889999999999  8776  899999999999999999999854  3444443

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=98.70  E-value=7.3e-08  Score=69.13  Aligned_cols=50  Identities=18%  Similarity=0.244  Sum_probs=43.3

Q ss_pred             ccccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           89 FPWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        89 f~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      +++|++  .+|++||++|++++..+|+ +.+.+++||++++|+|..|.+....
T Consensus        56 ~~~H~H~~~~E~~~vl~G~~~~~~~~~-~~~~l~~Gd~~~ip~g~~H~~~~~~  107 (134)
T 2o8q_A           56 PTWHTHTVGFQLFYVLRGWVEFEYEDI-GAVMLEAGGSAFQPPGVRHRELRHS  107 (134)
T ss_dssp             CCCEEECCSCEEEEEEESEEEEEETTT-EEEEEETTCEEECCTTCCEEEEEEC
T ss_pred             CCCEECCCCcEEEEEEeCEEEEEECCc-EEEEecCCCEEEECCCCcEEeEeCC
Confidence            345543  4899999999999999994 4899999999999999999999843

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.67  E-value=4.6e-08  Score=76.26  Aligned_cols=69  Identities=17%  Similarity=0.281  Sum_probs=55.5

Q ss_pred             ceeeeEecCCccc-cccCC-CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEEe
Q 031987           77 TSWPKWGCPPSKF-PWTFT-ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYSL  147 (149)
Q Consensus        77 ~~~giWe~~pg~f-~~h~~-~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yvi  147 (149)
                      .....++..||.. .+|.+ .+|++|||+|+++++.+++ +.+.+++||++ ||+|..|.|+..  ++.|-.+++
T Consensus        79 ~~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~g-e~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~  151 (172)
T 3es1_A           79 SVIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDG-AKRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFIL  151 (172)
T ss_dssp             EEEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGG-CEEEECTTCEE-EECSCCBEEECCSSSCEEEEEEE
T ss_pred             eEEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCC-eEEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEE
Confidence            3445677778865 56655 5789999999999999855 58999999999 999999999986  457766665

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=98.67  E-value=1.2e-07  Score=71.91  Aligned_cols=67  Identities=12%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEEe
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYSL  147 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yvi  147 (149)
                      ...++..||.. ++|+ ..+|++||++|+++++++|+  .+.+++||+++||+|..|.+...  ++++-.+++
T Consensus        46 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~--~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~  116 (156)
T 3kgz_A           46 WRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGET--ISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVV  116 (156)
T ss_dssp             EEEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEETTE--EEEEETTCEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             EEEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            44566666653 4443 46899999999999999887  89999999999999999999985  446655554

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.67  E-value=1.3e-07  Score=74.68  Aligned_cols=67  Identities=7%  Similarity=0.136  Sum_probs=56.8

Q ss_pred             eeeeEecCCccc-ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           78 SWPKWGCPPSKF-PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        78 ~~giWe~~pg~f-~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      ..-.+.-.+|.. +.| ++.+|+.|||||+++++.+|.  ...++|||.+++|+|..|.++..++.+-..+
T Consensus        38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~--~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i  106 (227)
T 3rns_A           38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENN--KKTISNGDFLEITANHNYSIEARDNLKLIEI  106 (227)
T ss_dssp             EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSC--EEEEETTEEEEECSSCCEEEEESSSEEEEEE
T ss_pred             EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCCEEEEECCCcEEEEE
Confidence            445677788875 455 578999999999999999987  8999999999999999999999988665543

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=98.66  E-value=1.9e-07  Score=68.88  Aligned_cols=65  Identities=11%  Similarity=0.015  Sum_probs=51.3

Q ss_pred             eeeEecCCccc-cccC--CCceEEEEEEeEEEEEECCcceE------EEEcCCcEEEEcCCcEEEEEEcC--ceEEEE
Q 031987           79 WPKWGCPPSKF-PWTF--TATETMYLLEGKVIVYVDGREGS------FEIGTGDLVVFPKGMKITWDVIE--AVNKHY  145 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~--~~dE~~yVLEG~v~vt~dgg~~~------~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Y  145 (149)
                      ...+...||.. ++|+  ..+|++||++|++++..+|+  .      +.+++||+++||+|..|.+....  +++-..
T Consensus        45 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~--~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~  120 (148)
T 2oa2_A           45 VTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHR--QDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYS  120 (148)
T ss_dssp             EEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESB--TTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEE
T ss_pred             EEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCc--cccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEE
Confidence            44566677653 4554  35799999999999999988  5      99999999999999999999864  444433

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=98.64  E-value=1.4e-07  Score=66.15  Aligned_cols=58  Identities=14%  Similarity=0.305  Sum_probs=47.5

Q ss_pred             eEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEE-EEcCCcEEEEcCCcEEEEEEcCc
Q 031987           81 KWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSF-EIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        81 iWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~-~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .+...||.. ++|+ +.+|++||++|++++..+++  .+ .+++||++++|+|..|.++..+.
T Consensus        31 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~--~~~~l~~Gd~i~ip~~~~H~~~~~~~   91 (117)
T 2b8m_A           31 HIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQ--EPHNYKEGNIVYVPFNVKMLIQNINS   91 (117)
T ss_dssp             EEEEETTCBCCCEECSSCEEEEEEESEEEEEETTS--CCEEEETTCEEEECTTCEEEEECCSS
T ss_pred             EEEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCE--EEEEeCCCCEEEECCCCcEEeEcCCC
Confidence            344455543 4453 57999999999999999988  67 99999999999999999998654

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.64  E-value=1.5e-07  Score=74.34  Aligned_cols=69  Identities=17%  Similarity=0.201  Sum_probs=58.4

Q ss_pred             ceeeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEE-cCceEEEEEe
Q 031987           77 TSWPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDV-IEAVNKHYSL  147 (149)
Q Consensus        77 ~~~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v-~e~vrK~Yvi  147 (149)
                      .....|...||.. ++|. +.+|++|||+|+++++.+|+  .+.+++||++++|+|..|.+.. .++.+-..++
T Consensus       153 ~~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~--~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~ll~~  224 (227)
T 3rns_A          153 LVMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK--PFIVKKGESAVLPANIPHAVEAETENFKMLLIL  224 (227)
T ss_dssp             EEEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE--EEEEETTEEEEECTTSCEEEECCSSCEEEEEEE
T ss_pred             eEEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE--EEEECCCCEEEECCCCcEEEEeCCCCEEEEEEE
Confidence            4456788888875 5554 47899999999999999987  8999999999999999999999 8888776653

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.64  E-value=2.4e-07  Score=67.26  Aligned_cols=66  Identities=17%  Similarity=0.232  Sum_probs=52.6

Q ss_pred             eeeEecCCccc-cccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEE
Q 031987           79 WPKWGCPPSKF-PWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yv  146 (149)
                      ...+...||.. .+|.+  .+|++||++|++++..+|.  .+.+++||++++|+|..+.|....  +.+-.++
T Consensus        59 ~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~--~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~v  129 (133)
T 1o4t_A           59 FARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK--DVPIKAGDVCFTDSGESHSIENTGNTDLEFLAV  129 (133)
T ss_dssp             EEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE--EEEEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             EEEEEECCCCccCceECCCccEEEEEEeCEEEEEECCE--EEEeCCCcEEEECCCCcEEeEECCCCCEEEEEE
Confidence            34566677753 45554  5899999999999999987  899999999999999999999864  4554443

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=98.61  E-value=1.6e-07  Score=71.87  Aligned_cols=68  Identities=15%  Similarity=0.114  Sum_probs=53.4

Q ss_pred             eeeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEEe
Q 031987           78 SWPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYSL  147 (149)
Q Consensus        78 ~~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yvi  147 (149)
                      ....++..||.. ++|+ ..+|++||++|++++.++|+  .+.+++||++++|+|..|.+...  ++++-++++
T Consensus        54 ~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~--~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i~  125 (166)
T 3jzv_A           54 ELRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRA--VSAVAPYDLVTIPGWSWHQFRAPADEALGFLCMV  125 (166)
T ss_dssp             EEEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEETTE--EEEECTTCEEEECTTCCEEEECCTTSCEEEEEEE
T ss_pred             EEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            345566677754 4443 46899999999999999887  89999999999999999999975  445555544

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.61  E-value=8.8e-08  Score=74.08  Aligned_cols=54  Identities=9%  Similarity=0.088  Sum_probs=45.1

Q ss_pred             ccccCCCceEEEEEE--eEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           89 FPWTFTATETMYLLE--GKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        89 f~~h~~~dE~~yVLE--G~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      .+||...+|++|||+  |++++.++|+  .+.+++||++++|+|..|++.  ..++-..+
T Consensus        60 ~H~H~~~~E~~yVLe~~G~g~v~idge--~~~l~~GD~v~IPpg~~H~i~--g~l~~L~I  115 (157)
T 4h7l_A           60 THYHREHQEIYVVLDHAAHATIELNGQ--SYPLTKLLAISIPPLVRHRIV--GEATIINI  115 (157)
T ss_dssp             CBBCSSCEEEEEEEEECTTCEEEETTE--EEECCTTEEEEECTTCCEEEE--SCEEEEEE
T ss_pred             ceECCCCcEEEEEEecCcEEEEEECCE--EEEeCCCCEEEECCCCeEeeE--CCEEEEEE
Confidence            355555689999999  9999999887  899999999999999999996  35554443

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=98.59  E-value=3.1e-07  Score=65.03  Aligned_cols=56  Identities=16%  Similarity=0.245  Sum_probs=46.7

Q ss_pred             EecCCcc-ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           82 WGCPPSK-FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        82 We~~pg~-f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      ....||. .++|+ +..|++||++|++++..+|.  .+.+++||++++|+|..|.+....
T Consensus        39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~--~~~l~~Gd~~~i~~~~~H~~~~~~   96 (128)
T 4i4a_A           39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRINDE--DFPVTKGDLIIIPLDSEHHVINNN   96 (128)
T ss_dssp             EEECTTEECCCBCCSSEEEEEEEESEEEEEETTE--EEEEETTCEEEECTTCCEEEEECS
T ss_pred             EEECCCCccCCEecCCeEEEEEEeCEEEEEECCE--EEEECCCcEEEECCCCcEEeEeCC
Confidence            4445554 23443 58999999999999999888  899999999999999999999853

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=98.59  E-value=3.5e-07  Score=64.91  Aligned_cols=59  Identities=20%  Similarity=0.207  Sum_probs=46.4

Q ss_pred             eeeEecCCccc-c-ccCC-C-ceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           79 WPKWGCPPSKF-P-WTFT-A-TETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        79 ~giWe~~pg~f-~-~h~~-~-dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      ...+...|+.. + +|++ . ++++||++|++++.+++.  .+.+++||++++|+|..+.|....
T Consensus        28 ~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~--~~~l~~Gd~i~i~~~~~H~~~~~~   90 (125)
T 3cew_A           28 VSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGE--KIELQAGDWLRIAPDGKRQISAAS   90 (125)
T ss_dssp             EEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTE--EEEEETTEEEEECTTCCEEEEEBT
T ss_pred             EEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCE--EEEeCCCCEEEECCCCcEEEEcCC
Confidence            44556666653 3 4543 3 455569999999999987  899999999999999999999863

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=98.58  E-value=2.6e-07  Score=68.80  Aligned_cols=69  Identities=10%  Similarity=0.007  Sum_probs=52.8

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcc-------eEEEEcCCcEEEEcCCcEEEEEEcC---ceEEEEE
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGRE-------GSFEIGTGDLVVFPKGMKITWDVIE---AVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~-------~~~~i~aGD~v~~PkG~~~tW~v~e---~vrK~Yv  146 (149)
                      .......||.. ++|+ ..+|++||++|++++..++++       +.+.+++||++++|+|..|.+....   +++-.++
T Consensus        43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i  122 (163)
T 1lr5_A           43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVI  122 (163)
T ss_dssp             EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEE
T ss_pred             EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEEEEEE
Confidence            34455666653 3443 578999999999999999821       3899999999999999999999865   5555544


Q ss_pred             e
Q 031987          147 L  147 (149)
Q Consensus       147 i  147 (149)
                      +
T Consensus       123 ~  123 (163)
T 1lr5_A          123 I  123 (163)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=98.58  E-value=2.4e-07  Score=66.40  Aligned_cols=65  Identities=11%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             eeeEecCCcc-ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEE
Q 031987           79 WPKWGCPPSK-FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHY  145 (149)
Q Consensus        79 ~giWe~~pg~-f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Y  145 (149)
                      ...++..|+. +++|+ +..|++||++|++++..+++  .+.+++||++++|+|..+.|....  +.+-..
T Consensus        50 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~--~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~  118 (126)
T 1vj2_A           50 MRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQG--EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLC  118 (126)
T ss_dssp             EEEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSC--EEEEETTEEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             EEEEEECCCCcCCceeCCCcEEEEEEEeEEEEEECCE--EEEECCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            4445556654 34554 37999999999999999987  899999999999999999999864  344433

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.57  E-value=2.6e-07  Score=74.04  Aligned_cols=64  Identities=19%  Similarity=0.147  Sum_probs=52.8

Q ss_pred             eeEecCCccc-cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           80 PKWGCPPSKF-PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        80 giWe~~pg~f-~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      ..++..||.- ..+. .+|++|||+|+++++.+|.  .+.+++||+++||+|..|.|+..++.+-.++
T Consensus        53 ~~~~l~Pg~~~~~~~-~ee~~~Vl~G~~~~~~~~~--~~~l~~Gd~~~~p~~~~H~~~n~~~~~~l~v  117 (246)
T 1sfn_A           53 FTAEMPAGAQATESV-YQRFAFVLSGEVDVAVGGE--TRTLREYDYVYLPAGEKHMLTAKTDARVSVF  117 (246)
T ss_dssp             EEEEECTTCEEECCS-SEEEEEEEEEEEEEECSSC--EEEECTTEEEEECTTCCCEEEEEEEEEEEEE
T ss_pred             EEEEECCCCcCCCCc-eeEEEEEEECEEEEEECCE--EEEECCCCEEEECCCCCEEEEeCCCEEEEEE
Confidence            4466677654 3345 8999999999999999988  8999999999999999999999866664444

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.57  E-value=1.4e-07  Score=79.47  Aligned_cols=58  Identities=22%  Similarity=0.409  Sum_probs=51.1

Q ss_pred             cccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           89 FPWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        89 f~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      .+.| .+.||++|||||+++++++|. +.+.+++||++++|+|..+.++..+..++++++
T Consensus       265 ~~~h~~~~~~~~~vleG~~~i~i~g~-~~~~l~~Gd~~~iPag~~h~~~~~~~~~~~l~~  323 (350)
T 1juh_A          265 VPTWSFPGACAFQVQEGRVVVQIGDY-AATELGSGDVAFIPGGVEFKYYSEAYFSKVLFV  323 (350)
T ss_dssp             CCCBCCSSCEEEEEEESCEEEEETTS-CCEEECTTCEEEECTTCCEEEEESSSSEEEEEE
T ss_pred             CCcccCCCcEEEEEEeeEEEEEECCe-EEEEeCCCCEEEECCCCCEEEEecCCeEEEEEE
Confidence            3444 679999999999999999994 489999999999999999999998887777765

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.56  E-value=3.4e-07  Score=69.60  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=48.9

Q ss_pred             eeEecCCccc---cccCC-CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           80 PKWGCPPSKF---PWTFT-ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        80 giWe~~pg~f---~~h~~-~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      -.+...||..   ++|.+ .+|++|||+|++++..+|.  .+.+++||+++||+|..|.|+....
T Consensus       107 ~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~--~~~l~~GD~i~i~~~~~H~~~n~~~  169 (192)
T 1y9q_A          107 FEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQ--WHELQQGEHIRFFSDQPHGYAAVTE  169 (192)
T ss_dssp             EEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTE--EEEECTTCEEEEECSSSEEEEESSS
T ss_pred             EEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCE--EEEeCCCCEEEEcCCCCeEeECCCC
Confidence            3456667653   25644 5999999999999999877  8999999999999999999999743

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.56  E-value=3.8e-07  Score=73.26  Aligned_cols=60  Identities=13%  Similarity=0.098  Sum_probs=49.9

Q ss_pred             eeeEecCCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           79 WPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        79 ~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ...+...||..   ++|...+|++|||+|++++.++|.  .+.+++||+++||+|..|.|+....
T Consensus       181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~--~~~l~~GD~i~~~~~~~H~~~n~g~  243 (261)
T 1rc6_A          181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNN--WIPVKKGDYIFMGAYSLQAGYGVGR  243 (261)
T ss_dssp             EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSC--EEEEETTCEEEECSSEEEEEEEC--
T ss_pred             EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCE--EEEeCCCCEEEECCCCcEEeEeCCC
Confidence            45677778764   344457899999999999999987  8999999999999999999998743

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=98.52  E-value=3.7e-07  Score=73.93  Aligned_cols=71  Identities=8%  Similarity=0.077  Sum_probs=60.2

Q ss_pred             CceeeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc-CceEEEEEe
Q 031987           76 VTSWPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI-EAVNKHYSL  147 (149)
Q Consensus        76 v~~~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~-e~vrK~Yvi  147 (149)
                      ....|+|...||.. ++|. ..+|++|||+|++++..+++ +.+.+++||++++|.|..|.+++. +++.-.|+.
T Consensus       131 ~l~lG~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g-~~~~l~pGd~v~ipsgv~Ha~rt~dePllalwvW  204 (217)
T 4b29_A          131 SLRVTVGYWGPGLDYGWHEHLPEELYSVVSGRALFHLRNA-PDLMLEPGQTRFHPANAPHAMTTLTDPILTLVLW  204 (217)
T ss_dssp             SCEEEEEEECSSCEEEEEECSSEEEEEEEEECEEEEETTS-CCEEECTTCEEEECTTCCEEEECCSSCEEEEEEE
T ss_pred             eEEEEEEEECCCCcCCCCCCCCceEEEEEeCCEEEEECCC-CEEecCCCCEEEcCCCCceeEEECCccEEEEEEE
Confidence            34568899999975 7774 48999999999999999977 699999999999999999999875 457767764

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=98.52  E-value=7.3e-07  Score=68.44  Aligned_cols=70  Identities=11%  Similarity=0.139  Sum_probs=53.9

Q ss_pred             ceeeeEecCCccc-cc-cCCCceEEEEEEeEEEEEEC--CcceEEEEcCCcEEEEcCCcEEEEEEcC---ceEEEEE
Q 031987           77 TSWPKWGCPPSKF-PW-TFTATETMYLLEGKVIVYVD--GREGSFEIGTGDLVVFPKGMKITWDVIE---AVNKHYS  146 (149)
Q Consensus        77 ~~~giWe~~pg~f-~~-h~~~dE~~yVLEG~v~vt~d--gg~~~~~i~aGD~v~~PkG~~~tW~v~e---~vrK~Yv  146 (149)
                      .+....+..||.. .. |.+.+|++||++|+++++..  +++..+.+++||+++||+|..|.+....   +++-.++
T Consensus        41 ~~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v  117 (178)
T 1dgw_A           41 YRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKF  117 (178)
T ss_dssp             EEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEE
T ss_pred             EEEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEE
Confidence            4455677888875 23 45679999999999999885  2226899999999999999999999863   4444443

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.51  E-value=6.5e-07  Score=72.86  Aligned_cols=62  Identities=16%  Similarity=0.228  Sum_probs=50.8

Q ss_pred             ceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           77 TSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        77 ~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ......+..||..   ++|...+|++|||+|+++++.+|.  .+.+++||+++||+|..|.|.....
T Consensus        46 ~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~--~~~l~~Gd~~~~p~~~~H~~~n~~~  110 (337)
T 1y3t_A           46 FEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGE--RYLLISGDYANIPAGTPHSYRMQSH  110 (337)
T ss_dssp             EEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTE--EEEECTTCEEEECTTCCEEEEECST
T ss_pred             EEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEECCE--EEEECCCCEEEECCCCcEEEEECCC
Confidence            3444566777654   344337999999999999999876  8999999999999999999999765

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=98.50  E-value=1.8e-06  Score=67.17  Aligned_cols=76  Identities=24%  Similarity=0.293  Sum_probs=55.4

Q ss_pred             hhhcCCceeeeEecCCccc-cccCC--CceEEEEEEeEEEEEECCc----ce--EEEEcCCcEEEEcCCcEEEEEEc--C
Q 031987           71 LSELGVTSWPKWGCPPSKF-PWTFT--ATETMYLLEGKVIVYVDGR----EG--SFEIGTGDLVVFPKGMKITWDVI--E  139 (149)
Q Consensus        71 L~~lGv~~~giWe~~pg~f-~~h~~--~dE~~yVLEG~v~vt~dgg----~~--~~~i~aGD~v~~PkG~~~tW~v~--e  139 (149)
                      +...|. +....+..||.. ++|++  .+|++||++|++++...++    ++  .+.+++||+++||+|..|.+...  +
T Consensus        67 l~~~~~-~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~  145 (201)
T 1fi2_A           67 TNTLGV-SMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKT  145 (201)
T ss_dssp             GTTSSC-EEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSS
T ss_pred             cccCce-EEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCC
Confidence            444443 344567777764 45544  5799999999999988532    25  78999999999999999999975  4


Q ss_pred             ceEEEEEe
Q 031987          140 AVNKHYSL  147 (149)
Q Consensus       140 ~vrK~Yvi  147 (149)
                      +++-.+++
T Consensus       146 ~~~~l~v~  153 (201)
T 1fi2_A          146 EAYMVVSF  153 (201)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEE
Confidence            45555544

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=98.50  E-value=9.9e-07  Score=73.12  Aligned_cols=70  Identities=20%  Similarity=0.363  Sum_probs=54.3

Q ss_pred             eeeeEecCCccc---cccCCCceEEEEEEeEEEEEE---CCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEEe
Q 031987           78 SWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYV---DGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYSL  147 (149)
Q Consensus        78 ~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~---dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yvi  147 (149)
                      ........||..   +||.+.+|++||++|+++++.   +|....+.+++||+++||+|..|.+...+  +++-..++
T Consensus        53 ~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~  130 (361)
T 2vqa_A           53 AGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVF  130 (361)
T ss_dssp             EEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEECTTCEEEEEECSSSCEEEEEEE
T ss_pred             eeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEE
Confidence            344566677765   455558999999999999999   44224689999999999999999999985  55554444

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.49  E-value=8.9e-07  Score=65.60  Aligned_cols=60  Identities=15%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceE-EEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGS-FEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~-~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ...+...||.. ++|. +..|++||++|++++..+++  . +.+++||++++|+|..|.+.....
T Consensus        50 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~--~~~~l~~Gd~i~ip~~~~H~~~n~~~  112 (147)
T 2f4p_A           50 VYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGK--PARILKKGDVVEIPPNVVHWHGAAPD  112 (147)
T ss_dssp             EEEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTS--CCEEEETTCEEEECTTCCEEEEEBTT
T ss_pred             EEEEEECCCCccCceECCCceEEEEEeCEEEEEECCE--EEEEECCCCEEEECCCCcEEeEeCCC
Confidence            45566677653 4554 46999999999999999988  6 999999999999999999998754

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.48  E-value=8.4e-07  Score=68.76  Aligned_cols=68  Identities=16%  Similarity=0.046  Sum_probs=52.3

Q ss_pred             CceeeeEecCCccc-------cccCC----CceEEEEEEeEEEEEECCcce----EEEEcCCcEEEEcCCcEEEEEEcC-
Q 031987           76 VTSWPKWGCPPSKF-------PWTFT----ATETMYLLEGKVIVYVDGREG----SFEIGTGDLVVFPKGMKITWDVIE-  139 (149)
Q Consensus        76 v~~~giWe~~pg~f-------~~h~~----~dE~~yVLEG~v~vt~dgg~~----~~~i~aGD~v~~PkG~~~tW~v~e-  139 (149)
                      ....+.....||..       ++|++    .+|++||++|++++..++. .    .+.+++||++++|+|..|.+.... 
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~-~g~~~~~~l~~GD~v~ip~g~~H~~~N~g~  144 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTP-EGDAKWISMEPGTVVYVPPYWAHRTVNIGD  144 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECT-TCCEEEEEECTTCEEEECTTCEEEEEECSS
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCc-CCcEEEEEECCCcEEEECCCCeEEEEECCc
Confidence            34456667777764       24443    3799999999999999887 2    389999999999999999999864 


Q ss_pred             -ceEEE
Q 031987          140 -AVNKH  144 (149)
Q Consensus       140 -~vrK~  144 (149)
                       +++-.
T Consensus       145 ~~~~~l  150 (190)
T 1x82_A          145 EPFIFL  150 (190)
T ss_dssp             SCEEEE
T ss_pred             ccEEEE
Confidence             45433

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.48  E-value=3.9e-07  Score=73.15  Aligned_cols=65  Identities=14%  Similarity=0.212  Sum_probs=50.8

Q ss_pred             eeEecCCccc---ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEE
Q 031987           80 PKWGCPPSKF---PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYS  146 (149)
Q Consensus        80 giWe~~pg~f---~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yv  146 (149)
                      ..++..||..   +.| ...+|++|||+|+++++.+|.  .+.+++||+++||+|..|.|+..  ++.+-.++
T Consensus        62 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~--~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~v  132 (261)
T 1rc6_A           62 YLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGK--TFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLY  132 (261)
T ss_dssp             EEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTE--EEEEETTEEEEECTTCCCEEEECSSSCEEEEEE
T ss_pred             EEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECCE--EEEECCCCEEEECCCCCEEEEeCCCCCEEEEEE
Confidence            3455566653   222 236899999999999999887  89999999999999999999997  44554444

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.47  E-value=3.8e-07  Score=75.47  Aligned_cols=66  Identities=11%  Similarity=0.087  Sum_probs=53.5

Q ss_pred             eeeEecCCcccc-c-cCCCceEEEEEEeEEEEEEC-CcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           79 WPKWGCPPSKFP-W-TFTATETMYLLEGKVIVYVD-GREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f~-~-h~~~dE~~yVLEG~v~vt~d-gg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      -...+..||... . +...+|++|||+|+++++++ |.  ++.+++||+++||+|..|+|+..++.|-+++
T Consensus        72 ~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~--~~~L~~Gds~y~p~~~~H~~~N~~~Ar~l~V  140 (266)
T 4e2q_A           72 MYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSS--SKKLTVDSYAYLPPNFHHSLDCVESATLVVF  140 (266)
T ss_dssp             EEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CC--CEEECTTEEEEECTTCCCEEEESSCEEEEEE
T ss_pred             EEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCc--EEEEcCCCEEEECCCCCEEEEeCCCEEEEEE
Confidence            445666777642 2 34579999999999999998 55  8999999999999999999999988776665

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.47  E-value=1.1e-06  Score=63.64  Aligned_cols=59  Identities=19%  Similarity=0.266  Sum_probs=49.2

Q ss_pred             eeeEecCCccc-------cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           79 WPKWGCPPSKF-------PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        79 ~giWe~~pg~f-------~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      +|.+.|.++..       +...+.-|++||++|++++.++|.  .+.+++||++++|+|..|.+....
T Consensus        15 ~G~~~~~~~~~~~~~~~~p~~h~~~~i~~v~~G~~~~~i~~~--~~~l~~Gd~~~i~p~~~H~~~~~~   80 (164)
T 2arc_A           15 AGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGR--EFVCRPGDILLFPPGEIHHYGRHP   80 (164)
T ss_dssp             EEEEEEETTSTTCSCEEETTCCSSEEEEEEEEECEEEEETTE--EEEECTTCEEEECTTCCEEEEECT
T ss_pred             hcceeeccCCchhhhhccccCCCceEEEEEEEeEEEEEECCE--EEEecCCeEEEEcCCCCEEEEeCC
Confidence            67777777533       112467899999999999999988  899999999999999999999864

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.47  E-value=4.1e-07  Score=74.53  Aligned_cols=66  Identities=15%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             eeeEecCCccc---ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEE
Q 031987           79 WPKWGCPPSKF---PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f---~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yv  146 (149)
                      ...++..||..   ++| ...+|++|||+|+++++.+|.  .+.+++||+++||+|..|.|+..  ++.+-.++
T Consensus        70 ~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~--~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l~v  141 (278)
T 1sq4_A           70 QYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQ--VHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWI  141 (278)
T ss_dssp             EEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSC--EEEECTTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             EEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCcEEEEECCCCCEEEEEE
Confidence            34566666653   333 457999999999999999987  89999999999999999999987  45555544

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=98.46  E-value=1.6e-06  Score=76.12  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=62.3

Q ss_pred             hhhhcCCceeeeEecCCcccc--ccCCCceEEEEEEeEEEEEE--CCcceEEEEcCCcEEEEcCCcEEEEEEcC---ceE
Q 031987           70 KLSELGVTSWPKWGCPPSKFP--WTFTATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGMKITWDVIE---AVN  142 (149)
Q Consensus        70 ~L~~lGv~~~giWe~~pg~f~--~h~~~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~v~~PkG~~~tW~v~e---~vr  142 (149)
                      .+...|..+....+..||...  .|.+.+|++|||+|+++++.  .++++.+.+++||+++||+|..|-|....   +++
T Consensus        79 ~l~~~g~~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~  158 (445)
T 2cav_A           79 KLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLR  158 (445)
T ss_dssp             TTGGGTTEEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSCCEE
T ss_pred             cccccCcEEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEEECCCCcEEEEECCCCCCEE
Confidence            455566667778999999862  35578999999999999986  34337889999999999999999999974   566


Q ss_pred             EEEEec
Q 031987          143 KHYSLE  148 (149)
Q Consensus       143 K~Yvi~  148 (149)
                      -..+++
T Consensus       159 ~l~v~~  164 (445)
T 2cav_A          159 ILKFAI  164 (445)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            555554

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.45  E-value=4.2e-07  Score=72.36  Aligned_cols=62  Identities=11%  Similarity=0.015  Sum_probs=51.1

Q ss_pred             cCC-ccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEEe
Q 031987           84 CPP-SKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYSL  147 (149)
Q Consensus        84 ~~p-g~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yvi  147 (149)
                      ..| |.. ++|. ..+|++|||+|+++++.+|+  .+.+++||+++||+|..|.+...  ++.+-.+++
T Consensus       152 ~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~--~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~  218 (243)
T 3h7j_A          152 IPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGC--TVEMKFGTAYFCEPREDHGAINRSEKESKSINIF  218 (243)
T ss_dssp             ECTTTEEEEEECCSSEEEEEECSSCEEEEETTE--EEEECTTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             ECCCCCcCCCEeCCCcEEEEEEECEEEEEECCE--EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            456 542 4453 36899999999999999988  89999999999999999999988  557666665

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.45  E-value=9.4e-07  Score=71.61  Aligned_cols=61  Identities=11%  Similarity=0.210  Sum_probs=50.8

Q ss_pred             eeeeEecCCccc-cc-cC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           78 SWPKWGCPPSKF-PW-TF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        78 ~~giWe~~pg~f-~~-h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ....+...||.. ++ |+ ..+|++|||+|++++.++|.  .+.+++||+++||+|..|.|.....
T Consensus       183 ~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~--~~~l~~GD~i~i~~~~~H~~~n~~~  246 (274)
T 1sef_A          183 NMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNE--WYPVEKGDYIFMSAYVPQAAYAVGR  246 (274)
T ss_dssp             EEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTE--EEEEETTCEEEECTTCCEEEEEECS
T ss_pred             EEEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCCEEEEeCCC
Confidence            345567777764 34 43 47899999999999999887  8999999999999999999998744

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.44  E-value=8.4e-07  Score=72.17  Aligned_cols=55  Identities=24%  Similarity=0.428  Sum_probs=45.9

Q ss_pred             ccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc-eEEEEEe
Q 031987           91 WTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA-VNKHYSL  147 (149)
Q Consensus        91 ~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~-vrK~Yvi  147 (149)
                      +|...+|++|||+|+++++++|.  .+.+++||+++||+|..|.|..... .+-.+++
T Consensus       235 ~H~~~~e~~~vl~G~~~~~i~~~--~~~l~~GD~~~ip~~~~H~~~n~~~~~~~l~v~  290 (337)
T 1y3t_A          235 YHEYHTETFYCLEGQMTMWTDGQ--EIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVL  290 (337)
T ss_dssp             ECSSCEEEEEEEESCEEEEETTE--EEEECTTCEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred             CCCCCcEEEEEEeCEEEEEECCE--EEEECCCCEEEECCCCeEEEEECCCCeEEEEEE
Confidence            33336999999999999999887  8999999999999999999999864 4444333

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.43  E-value=3.7e-07  Score=71.79  Aligned_cols=57  Identities=14%  Similarity=0.174  Sum_probs=44.9

Q ss_pred             EecCCc-cccccC-CCceEEEEEEeEEEEEECCcc--eEEEEcCCcEEEEcCCcEEEEEEc
Q 031987           82 WGCPPS-KFPWTF-TATETMYLLEGKVIVYVDGRE--GSFEIGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        82 We~~pg-~f~~h~-~~dE~~yVLEG~v~vt~dgg~--~~~~i~aGD~v~~PkG~~~tW~v~  138 (149)
                      +..+|+ .++||. +.||++|+|+|++.+...+++  ..+.+++||.+++|+|..|.-.-.
T Consensus        40 ~v~Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvpH~P~r~  100 (174)
T 1yfu_A           40 VVGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRP  100 (174)
T ss_dssp             EECSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBC
T ss_pred             EEcCCCcCccCcCCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCCcCcccc
Confidence            344453 467774 589999999999999996631  479999999999999999976433

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.41  E-value=6.7e-07  Score=72.51  Aligned_cols=65  Identities=12%  Similarity=0.112  Sum_probs=50.6

Q ss_pred             eeEecCCccc---ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEE
Q 031987           80 PKWGCPPSKF---PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYS  146 (149)
Q Consensus        80 giWe~~pg~f---~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yv  146 (149)
                      ..++..||.-   +.+ ...+|++|||||+++++++|.  .+.+++||+++||+|..|.|+..  ++.+-.++
T Consensus        65 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~--~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~v  135 (274)
T 1sef_A           65 YIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQE--THELEAGGYAYFTPEMKMYLANAQEADTEVFLY  135 (274)
T ss_dssp             EEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSC--EEEEETTEEEEECTTSCCEEEESSSSCEEEEEE
T ss_pred             EEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEECCE--EEEECCCCEEEECCCCCEEEEeCCCCCEEEEEE
Confidence            3455556653   222 346899999999999999887  89999999999999999999997  44554443

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.40  E-value=1.3e-06  Score=69.50  Aligned_cols=61  Identities=8%  Similarity=-0.039  Sum_probs=51.3

Q ss_pred             eeeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEE-EcCCcEEEEEEcCc
Q 031987           78 SWPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVV-FPKGMKITWDVIEA  140 (149)
Q Consensus        78 ~~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~-~PkG~~~tW~v~e~  140 (149)
                      ....|...||.. ++|. +.+|++||++|+++++++|+  ...+++||+++ +|+|..|.|+..+.
T Consensus        35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~~--~~~l~~Gd~i~~ip~~~~H~~~n~~~   98 (243)
T 3h7j_A           35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDV--TRKMTALESAYIAPPHVPHGARNDTD   98 (243)
T ss_dssp             EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEETTE--EEEEETTTCEEEECTTCCEEEEECSS
T ss_pred             EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEECCE--EEEECCCCEEEEcCCCCcEeeEeCCC
Confidence            345677788864 5564 48999999999999999877  89999999996 99999999999755

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.37  E-value=5.1e-07  Score=71.11  Aligned_cols=55  Identities=16%  Similarity=0.206  Sum_probs=46.1

Q ss_pred             eEecCCcc-ccccC-CCceEEEEEEeEEEEEECCcc------eEEEEcCCcEEEEcCCcEEEE
Q 031987           81 KWGCPPSK-FPWTF-TATETMYLLEGKVIVYVDGRE------GSFEIGTGDLVVFPKGMKITW  135 (149)
Q Consensus        81 iWe~~pg~-f~~h~-~~dE~~yVLEG~v~vt~dgg~------~~~~i~aGD~v~~PkG~~~tW  135 (149)
                      +|..+|+. ++||. +.||++|+|+|++.+.+.+++      ..+.+++||.+.+|+|..|.=
T Consensus        38 ~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP  100 (176)
T 1zvf_A           38 MIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSP  100 (176)
T ss_dssp             EEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEE
T ss_pred             EEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCC
Confidence            46667766 78885 589999999999999997742      379999999999999999854

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.37  E-value=8.6e-07  Score=74.70  Aligned_cols=51  Identities=14%  Similarity=0.290  Sum_probs=43.5

Q ss_pred             cccCCCceEEEEEEeEEEEEECC---cceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           90 PWTFTATETMYLLEGKVIVYVDG---REGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        90 ~~h~~~dE~~yVLEG~v~vt~dg---g~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      |+|...+|++|||+|++++.+++   ..+.+.+++||+++||+|..|.|.....
T Consensus        66 H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~  119 (350)
T 1juh_A           66 HIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP  119 (350)
T ss_dssp             EECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECST
T ss_pred             ccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCC
Confidence            34555799999999999999988   1138999999999999999999999754

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=98.36  E-value=2.6e-06  Score=74.38  Aligned_cols=78  Identities=12%  Similarity=0.128  Sum_probs=61.7

Q ss_pred             hhhhcCCceeeeEecCCccc-cc-cCCCceEEEEEEeEEEEEE--CCcceEEEEcCCcEEEEcCCcEEEEEEcC---ceE
Q 031987           70 KLSELGVTSWPKWGCPPSKF-PW-TFTATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGMKITWDVIE---AVN  142 (149)
Q Consensus        70 ~L~~lGv~~~giWe~~pg~f-~~-h~~~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~v~~PkG~~~tW~v~e---~vr  142 (149)
                      .+.-.|..+.......||.. .. |.+.+|++|||+|++++..  +++.....+++||+++||+|..|-+....   +++
T Consensus        54 ~l~~~~~~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~  133 (434)
T 2ea7_A           54 QMQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLR  133 (434)
T ss_dssp             GGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEE
T ss_pred             ccCccccEEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEECCCccEEEEeCCCCCCeE
Confidence            45666766778899999987 23 5568999999999999987  33347899999999999999999999875   455


Q ss_pred             EEEEe
Q 031987          143 KHYSL  147 (149)
Q Consensus       143 K~Yvi  147 (149)
                      -..++
T Consensus       134 ~l~~~  138 (434)
T 2ea7_A          134 IIKLA  138 (434)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            54443

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=98.32  E-value=2.6e-06  Score=73.97  Aligned_cols=78  Identities=15%  Similarity=0.250  Sum_probs=60.6

Q ss_pred             hhhhcCCceeeeEecCCccc-c-ccCCCceEEEEEEeEEEEEE--CCcceEEEEcCCcEEEEcCCcEEEEEEc---CceE
Q 031987           70 KLSELGVTSWPKWGCPPSKF-P-WTFTATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGMKITWDVI---EAVN  142 (149)
Q Consensus        70 ~L~~lGv~~~giWe~~pg~f-~-~h~~~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~v~~PkG~~~tW~v~---e~vr  142 (149)
                      .+...|..+.......||.. . .|.+.+|++|||+|+++++.  .++++...+++||+++||+|..|.+...   ++++
T Consensus        42 ~l~~~~~~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~  121 (416)
T 1uij_A           42 QLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLK  121 (416)
T ss_dssp             GGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCEE
T ss_pred             cccCcccEEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEEEECCCCeEEEEecCCCCCEE
Confidence            35555656678899999986 2 35678999999999999987  2223789999999999999999999987   3555


Q ss_pred             EEEEe
Q 031987          143 KHYSL  147 (149)
Q Consensus       143 K~Yvi  147 (149)
                      -..++
T Consensus       122 ~l~~~  126 (416)
T 1uij_A          122 MIWLA  126 (416)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44443

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.29  E-value=4.8e-07  Score=73.43  Aligned_cols=58  Identities=16%  Similarity=0.133  Sum_probs=46.5

Q ss_pred             EecCCccc---cccCCCceEEEEEEeEEEEEE--------CCcce-----------EEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           82 WGCPPSKF---PWTFTATETMYLLEGKVIVYV--------DGREG-----------SFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        82 We~~pg~f---~~h~~~dE~~yVLEG~v~vt~--------dgg~~-----------~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      ....||..   |+|...+|++|||+|++++..        +++ +           .+.++|||++++|+|..|.|....
T Consensus        48 ~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~  126 (239)
T 2xlg_A           48 AQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDEL-PVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPT  126 (239)
T ss_dssp             EEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSC-CSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCS
T ss_pred             EEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCc-ccccccccCceeEEEECCCCEEEECCCCCEEEEeCC
Confidence            34456643   345557999999999999999        443 1           789999999999999999999875


Q ss_pred             c
Q 031987          140 A  140 (149)
Q Consensus       140 ~  140 (149)
                      .
T Consensus       127 ~  127 (239)
T 2xlg_A          127 D  127 (239)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=98.28  E-value=2.4e-06  Score=61.20  Aligned_cols=58  Identities=17%  Similarity=0.256  Sum_probs=52.9

Q ss_pred             cCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987           84 CPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV  141 (149)
Q Consensus        84 ~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v  141 (149)
                      +.||++.......|+|.|++|++++...|..+-.+++|||.+.+|++....|++.+..
T Consensus        30 m~pGeytF~T~~~E~M~vvsG~~~V~lpg~~ew~~~~aGesF~Vpans~F~l~v~~~~   87 (94)
T 2oyz_A           30 MLPGEYTFGTQAPERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVKDAT   87 (94)
T ss_dssp             ECSEEEEEEESSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEESSCE
T ss_pred             EeceEEEEcCCCeEEEEEEEeEEEEEcCCCCcCEEECCCCEEEECCCCEEEEEEcccE
Confidence            4578887778899999999999999999886789999999999999999999999875

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.27  E-value=2.4e-06  Score=68.36  Aligned_cols=66  Identities=12%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             eeeEecCCccc-c--ccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           79 WPKWGCPPSKF-P--WTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f-~--~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      .-.-+-+||.. .  .+...+|++|||||+++++++|.  .+.++|||+++++++..|.|+...+-.-.|.
T Consensus       167 ~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~--~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl  235 (246)
T 1sfn_A          167 VSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEEN--YYPVTAGDIIWMGAHCPQWYGALGRNWSKYL  235 (246)
T ss_dssp             EEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTE--EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             EEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCE--EEEcCCCCEEEECCCCCEEEEcCCCCCEEEE
Confidence            33455667764 2  33457899999999999999887  8999999999999999999999765444444

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.26  E-value=3.5e-06  Score=66.83  Aligned_cols=52  Identities=23%  Similarity=0.436  Sum_probs=43.7

Q ss_pred             ccccC-CCceEEEEEEeEEEEEECCc-ce--EEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           89 FPWTF-TATETMYLLEGKVIVYVDGR-EG--SFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        89 f~~h~-~~dE~~yVLEG~v~vt~dgg-~~--~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      +.||+ +.+|++||++|++.+.++|+ ++  .+.+++||++++|+|..|.+...+.
T Consensus        97 ~~~H~H~~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~  152 (191)
T 1vr3_A           97 FEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEK  152 (191)
T ss_dssp             HSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTT
T ss_pred             CcceECCcceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCC
Confidence            46774 47999999999999999873 23  4589999999999999999988755

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=98.25  E-value=6.7e-06  Score=68.09  Aligned_cols=69  Identities=19%  Similarity=0.238  Sum_probs=51.6

Q ss_pred             eeeeEecCCccc---cccCCCceEEEEEEeEEEEEE--CCc-ceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEE
Q 031987           78 SWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYV--DGR-EGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYS  146 (149)
Q Consensus        78 ~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~--dgg-~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yv  146 (149)
                      ........||..   +||...+|++||++|++++++  +++ ...+.+++||+++||+|..|.+....  +++-+.+
T Consensus       235 ~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~  311 (361)
T 2vqa_A          235 TGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVV  311 (361)
T ss_dssp             EEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             eEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEE
Confidence            345567778764   344445999999999999998  233 13799999999999999999999863  4544433

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=98.22  E-value=8.4e-06  Score=68.30  Aligned_cols=64  Identities=23%  Similarity=0.390  Sum_probs=49.5

Q ss_pred             ceeeeEecCCccc-cccC-CCceEEEEEEeEEEEEE---CCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           77 TSWPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYV---DGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        77 ~~~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~---dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .....+...||.. +.|+ +.+|++||++|+++++.   +|....+.+++||+++||+|..|.+...+.
T Consensus        79 ~~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~  147 (385)
T 1j58_A           79 LASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEE  147 (385)
T ss_dssp             CEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEE
T ss_pred             eEEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEECCCCeEEEEECCC
Confidence            4456677788875 3343 38999999999999999   333114599999999999999999988753

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=98.22  E-value=2.6e-06  Score=64.95  Aligned_cols=53  Identities=13%  Similarity=0.085  Sum_probs=44.1

Q ss_pred             cccCCCceEEEEEEeEEEEEECCc------ceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987           90 PWTFTATETMYLLEGKVIVYVDGR------EGSFEIGTGDLVVFPKGMKITWDVIEAVN  142 (149)
Q Consensus        90 ~~h~~~dE~~yVLEG~v~vt~dgg------~~~~~i~aGD~v~~PkG~~~tW~v~e~vr  142 (149)
                      +.|-+.||+|+||+|++++...++      ...+.+++|+++++|+|..|+=...+..+
T Consensus        45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~e~~  103 (140)
T 3d0j_A           45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKDTK  103 (140)
T ss_dssp             EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECTTCE
T ss_pred             ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCCceE
Confidence            456679999999999999998843      23799999999999999999877665543

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=98.21  E-value=6.4e-06  Score=69.00  Aligned_cols=69  Identities=20%  Similarity=0.203  Sum_probs=52.0

Q ss_pred             eeeeEecCCccc---cccCCCceEEEEEEeEEEEEEC--Cc-ceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEE
Q 031987           78 SWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVD--GR-EGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYS  146 (149)
Q Consensus        78 ~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~d--gg-~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yv  146 (149)
                      .....+..||..   ++|...+|++||++|+++++++  +| ++.+.+++||+++||+|..|.+...  ++++-..+
T Consensus       258 ~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v  334 (385)
T 1j58_A          258 ASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEI  334 (385)
T ss_dssp             EEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEE
T ss_pred             EEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEECCCCeEEEEECCCCCEEEEEE
Confidence            345567778764   3444448999999999999986  22 2589999999999999999999986  34554443

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.05  E-value=1.3e-06  Score=61.20  Aligned_cols=60  Identities=12%  Similarity=0.153  Sum_probs=46.4

Q ss_pred             eEecCCccc-ccc--CCCceEEEEEEeEEEEEECCcc-eEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           81 KWGCPPSKF-PWT--FTATETMYLLEGKVIVYVDGRE-GSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        81 iWe~~pg~f-~~h--~~~dE~~yVLEG~v~vt~dgg~-~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .|.-.||.. .||  ....|+.||++|+++++.+|+. ....+++||++++|+|..|.......
T Consensus        21 r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~   84 (98)
T 3lag_A           21 EWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARKAGVQHDVRNEST   84 (98)
T ss_dssp             EEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEECTTCEEEEBCCSS
T ss_pred             EEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEEcCCCcEECEECCC
Confidence            367778874 455  4467889999999999998862 23468999999999999999987754

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.01  E-value=1.4e-05  Score=65.30  Aligned_cols=68  Identities=16%  Similarity=0.176  Sum_probs=54.0

Q ss_pred             eeeEecCCccc-cc--cCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEEec
Q 031987           79 WPKWGCPPSKF-PW--TFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYSLE  148 (149)
Q Consensus        79 ~giWe~~pg~f-~~--h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yvi~  148 (149)
                      ...-+-.||.. ++  +...+|.+|||||+++++++|.  .+.++|||+++++.|..+.+....  +++..+..|
T Consensus       193 ~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~--~~~v~~GD~~~~~~~~~h~~~n~g~~~~~yl~~~d  265 (278)
T 1sq4_A          193 VNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQD--WVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKD  265 (278)
T ss_dssp             EEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTE--EEEEETTCEEEEEESCCEEEECCSSSCEEEEEEEE
T ss_pred             EEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCE--EEEeCCCCEEEECCCCCEEEEcCCCCCEEEEEEEE
Confidence            34566678774 33  3346799999999999999887  999999999999999999999864  466665553

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.01  E-value=9.1e-06  Score=68.78  Aligned_cols=60  Identities=18%  Similarity=0.160  Sum_probs=49.9

Q ss_pred             eeeeEecCCccc-cccC-CCceEEEEEEeEEEE-EECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           78 SWPKWGCPPSKF-PWTF-TATETMYLLEGKVIV-YVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        78 ~~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~v-t~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      ..+.....||.. +.|. ..+|++||++|++++ .++|.  .+.+++||++++|+|..|.+....
T Consensus       101 ~~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g~--~~~l~~GD~~~iP~g~~H~~~n~~  163 (354)
T 2d40_A          101 YAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGE--RTPMNEGDFILTPQWRWHDHGNPG  163 (354)
T ss_dssp             EEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETTE--EEECCTTCEEEECTTSCEEEECCS
T ss_pred             EEEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEECCE--EEEEcCCCEEEECCCCcEEeEeCC
Confidence            456778888875 2332 578999999999999 77665  899999999999999999999864

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.00  E-value=2e-06  Score=67.22  Aligned_cols=52  Identities=13%  Similarity=0.128  Sum_probs=41.3

Q ss_pred             ccccC-CCceEEEEEEeEEEEEE--CCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           89 FPWTF-TATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        89 f~~h~-~~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ++||+ +.+|++||++|++.+.+  +|..-.+.+++||++++|+|..|.+...+.
T Consensus        93 ~~~H~H~~~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~  147 (179)
T 1zrr_A           93 LNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSE  147 (179)
T ss_dssp             HSCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSC
T ss_pred             ccceECChheEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCCCeEeeecCCC
Confidence            46664 47999999999999987  443012569999999999999999887654

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=97.96  E-value=4e-05  Score=67.78  Aligned_cols=60  Identities=15%  Similarity=0.315  Sum_probs=47.7

Q ss_pred             eeeEecCCccc---cccCCCceEEEEEEeEEEEEECC--cceEEE--EcCCcEEEEcCCcEEEEEEc
Q 031987           79 WPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG--REGSFE--IGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        79 ~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg--g~~~~~--i~aGD~v~~PkG~~~tW~v~  138 (149)
                      ...+...||..   |||...+|++|||+|++++.+.+  |...+.  +++||+++||+|+.|.....
T Consensus       340 ~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng  406 (476)
T 1fxz_A          340 AEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQ  406 (476)
T ss_dssp             EEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEC
T ss_pred             EEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeC
Confidence            45677788875   46666899999999999998854  223444  99999999999999987764

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=97.95  E-value=6.8e-06  Score=68.93  Aligned_cols=49  Identities=18%  Similarity=0.374  Sum_probs=40.7

Q ss_pred             ccccccC-CCceEEEEEEeEEEEEECCc--ceEEEEcCCcEEEEcCCcEEEE
Q 031987           87 SKFPWTF-TATETMYLLEGKVIVYVDGR--EGSFEIGTGDLVVFPKGMKITW  135 (149)
Q Consensus        87 g~f~~h~-~~dE~~yVLEG~v~vt~dgg--~~~~~i~aGD~v~~PkG~~~tW  135 (149)
                      .+++||+ +.||+||+++|++.+.+.++  -..+.+++||++++|+|+.|.=
T Consensus        42 ~R~d~H~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP~gv~HsP   93 (286)
T 2qnk_A           42 TRKDYHIEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSP   93 (286)
T ss_dssp             CCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEECTTCCEEE
T ss_pred             cCccCcCCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeCCCCCcCC
Confidence            3467775 48999999999999998764  1368999999999999998863

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=97.95  E-value=3.6e-05  Score=69.25  Aligned_cols=62  Identities=19%  Similarity=0.308  Sum_probs=48.0

Q ss_pred             hhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECC--cce--EEEEcCCcEEEEcCCcEEE
Q 031987           72 SELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG--REG--SFEIGTGDLVVFPKGMKIT  134 (149)
Q Consensus        72 ~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg--g~~--~~~i~aGD~v~~PkG~~~t  134 (149)
                      ..+|. +.......||..   |||...+|++||++|++++++-+  |..  ..++++||+++||+|+.|.
T Consensus       390 ~~Lgi-S~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~P~G~~H~  458 (531)
T 3fz3_A          390 RFLRL-SAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVI  458 (531)
T ss_dssp             HHHTC-EEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEE
T ss_pred             ccCce-eEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEECCCCeEE
Confidence            43443 356678888886   56677899999999999998844  212  4679999999999999994

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=97.93  E-value=2.9e-05  Score=65.63  Aligned_cols=58  Identities=16%  Similarity=0.202  Sum_probs=46.9

Q ss_pred             eEecCCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987           81 KWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV  141 (149)
Q Consensus        81 iWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v  141 (149)
                      +-...||..   ++|.. .|++||++|+.+++++|.  ++.+++||++++|+|..+..+..+++
T Consensus       272 ~~~l~pG~~~~~H~h~~-~ev~~v~~G~g~~~v~~~--~~~~~~GD~~~vP~~~~H~~~n~e~~  332 (354)
T 2d40_A          272 LQLLPKGFASRVARTTD-STIYHVVEGSGQVIIGNE--TFSFSAKDIFVVPTWHGVSFQTTQDS  332 (354)
T ss_dssp             EEEECTTCBCCCBEESS-CEEEEEEEEEEEEEETTE--EEEEETTCEEEECTTCCEEEEEEEEE
T ss_pred             EEEECCCCCCCceecCC-cEEEEEEeCeEEEEECCE--EEEEcCCCEEEECCCCeEEEEeCCCE
Confidence            445566654   34444 499999999999999765  89999999999999999999887664

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=97.91  E-value=5.7e-05  Score=67.56  Aligned_cols=60  Identities=15%  Similarity=0.246  Sum_probs=47.3

Q ss_pred             eeeEecCCccc---cccCCCceEEEEEEeEEEEEECCc--ceEEE--EcCCcEEEEcCCcEEEEEEc
Q 031987           79 WPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGR--EGSFE--IGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        79 ~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg--~~~~~--i~aGD~v~~PkG~~~tW~v~  138 (149)
                      .......||..   |||...+|++|||+|++++.+.+.  ...+.  +++||+++||+|+.|.....
T Consensus       374 ~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~viP~G~~H~~~Ng  440 (510)
T 3c3v_A          374 AEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQ  440 (510)
T ss_dssp             EEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEC
T ss_pred             EEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEEECCCCeEEEEeC
Confidence            45567778775   566678999999999999988542  23444  99999999999999987764

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=97.87  E-value=6.2e-05  Score=65.24  Aligned_cols=78  Identities=14%  Similarity=0.123  Sum_probs=59.7

Q ss_pred             hhhhcCCceeeeEecCCccc--cccCCCceEEEEEEeEEEEEE--CCcceEEEEcCCcE------EEEcCCcEEEEEEcC
Q 031987           70 KLSELGVTSWPKWGCPPSKF--PWTFTATETMYLLEGKVIVYV--DGREGSFEIGTGDL------VVFPKGMKITWDVIE  139 (149)
Q Consensus        70 ~L~~lGv~~~giWe~~pg~f--~~h~~~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~------v~~PkG~~~tW~v~e  139 (149)
                      .|.-+|..+...-+..|+.+  +++.+.+|++||++|++++..  .++..+..+++||+      ++||+|..|-+...+
T Consensus        45 ~l~~~~~~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g  124 (397)
T 2phl_A           45 RLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPD  124 (397)
T ss_dssp             GGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECC
T ss_pred             hhcccccEEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCcccccceEEECCCCcEEEEeCC
Confidence            44556656677788899987  344578999999999999987  23336889999999      999999999998765


Q ss_pred             ---ceEEEEEe
Q 031987          140 ---AVNKHYSL  147 (149)
Q Consensus       140 ---~vrK~Yvi  147 (149)
                         +++-...+
T Consensus       125 ~~~~l~~i~~~  135 (397)
T 2phl_A          125 PKEDLRIIQLA  135 (397)
T ss_dssp             SSCCEEEEEEE
T ss_pred             CCCCeEEEEee
Confidence               45544333

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=97.84  E-value=6.7e-05  Score=61.98  Aligned_cols=65  Identities=15%  Similarity=0.263  Sum_probs=52.8

Q ss_pred             eeEecCCccc-cc--cCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           80 PKWGCPPSKF-PW--TFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        80 giWe~~pg~f-~~--h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      -+..-+||.. +.  |...+|..|||||++.+.++|.  .+.++|||.++++++..+......+-.-.|.
T Consensus       189 ~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~~--~~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl  256 (266)
T 4e2q_A          189 HTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDN--WYPVQAGDVIWMAPFVPQWYAALGKTRSRYL  256 (266)
T ss_dssp             EEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEETTE--EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             EEEEECCCcCcCCceEcccceEEEEEeceEEEEECCE--EEEecCCCEEEECCCCcEEEEeCCCCCEEEE
Confidence            4567788876 33  3457799999999999999998  9999999999999999999998754443443

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=97.78  E-value=5.7e-05  Score=65.06  Aligned_cols=79  Identities=15%  Similarity=0.054  Sum_probs=58.1

Q ss_pred             EEEeeCCChhh-hhhcCCceeeeEecCCccc-ccc-CCCceEEEEEEeEEE-EEECCcceEEEEcCCcEEEEcCCcEEEE
Q 031987           60 VKIEKNPPQSK-LSELGVTSWPKWGCPPSKF-PWT-FTATETMYLLEGKVI-VYVDGREGSFEIGTGDLVVFPKGMKITW  135 (149)
Q Consensus        60 V~i~~~ps~~~-L~~lGv~~~giWe~~pg~f-~~h-~~~dE~~yVLEG~v~-vt~dgg~~~~~i~aGD~v~~PkG~~~tW  135 (149)
                      +.+=.||.-.. ..--....++++...||.. +.| ...+|++|||+|+.. +.++|.  .+.+++||++++|.|..|..
T Consensus        85 ~~~l~nP~~~~~~~~t~~L~a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~--~~~~~~GD~v~iP~g~~H~~  162 (368)
T 3nw4_A           85 ALGLANPGLGGNAYISPTMWAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGD--PVRMSRGDLLLTPGWCFHGH  162 (368)
T ss_dssp             EEECCCTTSTTCSCSSSSCEEEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTE--EEEEETTCEEEECTTCCEEE
T ss_pred             EEEEeCCCCCCcCccCCceEEEEEEECCCCccCceecccceEEEEEecceEEEEECCE--EEEEeCCCEEEECCCCcEEe
Confidence            33445665443 1112345578899999985 333 246799999999996 666666  99999999999999999999


Q ss_pred             EEcCc
Q 031987          136 DVIEA  140 (149)
Q Consensus       136 ~v~e~  140 (149)
                      .....
T Consensus       163 ~N~gd  167 (368)
T 3nw4_A          163 MNDTD  167 (368)
T ss_dssp             EECSS
T ss_pred             EeCCC
Confidence            99644

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=97.77  E-value=6.9e-05  Score=64.98  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=49.2

Q ss_pred             eeeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEE-cC
Q 031987           78 SWPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDV-IE  139 (149)
Q Consensus        78 ~~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v-~e  139 (149)
                      ..+.+...||.. +.|. ..+|++|||+|+..++..+| +.+.+++||++++|.|..|.... ..
T Consensus       124 ~a~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G-~~~~~~~GD~i~~P~g~~H~~~N~~g  187 (394)
T 3bu7_A          124 FSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDG-HKVELGANDFVLTPNGTWHEHGILES  187 (394)
T ss_dssp             EEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETT-EEEEECTTCEEEECTTCCEEEEECTT
T ss_pred             EEEEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECC-EEEEEcCCCEEEECcCCCEEEEcCCC
Confidence            457888999975 4442 45699999999998844444 59999999999999999999998 53

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=97.76  E-value=0.00012  Score=63.90  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             eeeeEecCCccc--cccCCCceEEEEEEeEEEEEE--CCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           78 SWPKWGCPPSKF--PWTFTATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        78 ~~giWe~~pg~f--~~h~~~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      ....-+.+|+.+  +.|.+.+|++||++|++.+..  .++.....+++||+++||+|..+-|...+
T Consensus        45 ~l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~~P~G~~h~~~N~g  110 (418)
T 3s7i_A           45 RIVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRH  110 (418)
T ss_dssp             EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECC
T ss_pred             EEEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEEEECCCCeEEEEecC
Confidence            344567788887  456789999999999998887  23336889999999999999999999853

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=97.74  E-value=0.00014  Score=63.02  Aligned_cols=59  Identities=14%  Similarity=0.080  Sum_probs=48.3

Q ss_pred             eeeEecCCccc-ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           79 WPKWGCPPSKF-PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        79 ~giWe~~pg~f-~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      .+.-...||.. +.| ...+|++|||||+..+.++|.  .+.+++||++++|+|..|......
T Consensus       296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V~ge--~~~~~~GD~~~iP~g~~H~~~N~g  356 (394)
T 3bu7_A          296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGK--RFDWSEHDIFCVPAWTWHEHCNTQ  356 (394)
T ss_dssp             EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEETTE--EEEECTTCEEEECTTCCEEEEECC
T ss_pred             EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEECCE--EEEEeCCCEEEECCCCeEEeEeCC
Confidence            44556667765 333 347799999999999999877  999999999999999999998853

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=97.72  E-value=8.7e-05  Score=65.41  Aligned_cols=58  Identities=16%  Similarity=0.295  Sum_probs=46.0

Q ss_pred             eeEecCCccc---cccCCCceEEEEEEeEEEEEECC--cceEEE--EcCCcEEEEcCCcEEEEEE
Q 031987           80 PKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG--REGSFE--IGTGDLVVFPKGMKITWDV  137 (149)
Q Consensus        80 giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg--g~~~~~--i~aGD~v~~PkG~~~tW~v  137 (149)
                      ..-...||..   |||...+|+.||++|++++++-+  |...+.  +++||+++||+|+.|.=..
T Consensus       325 a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v~P~G~~H~~~n  389 (459)
T 2e9q_A          325 ERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIKRA  389 (459)
T ss_dssp             EEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEE
T ss_pred             EEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEEECCCCEEEEEe
Confidence            4456678875   57777899999999999999864  324554  9999999999999986554

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=97.71  E-value=0.00011  Score=63.77  Aligned_cols=65  Identities=18%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             eeeEecCCccc---cccCCCceEEEEEEeEEEEEECCc-------c---eEEEEcCCcEEEEcCCcEEEEEEcCceEE
Q 031987           79 WPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGR-------E---GSFEIGTGDLVVFPKGMKITWDVIEAVNK  143 (149)
Q Consensus        79 ~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg-------~---~~~~i~aGD~v~~PkG~~~tW~v~e~vrK  143 (149)
                      ...-...||..   |||...+|+.||++|+++++.-+.       +   -...+++||+++||+|+.|.+...+.+.-
T Consensus       241 ~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~vvP~G~~h~~~n~~~l~~  318 (397)
T 2phl_A          241 ISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNF  318 (397)
T ss_dssp             EEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSSEEE
T ss_pred             EEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEEECCCCeEEEEeCCCeEE
Confidence            34456678876   577789999999999999988532       1   14679999999999999999988875543

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=97.66  E-value=0.0001  Score=53.79  Aligned_cols=57  Identities=23%  Similarity=0.408  Sum_probs=50.7

Q ss_pred             CCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987           85 PPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV  141 (149)
Q Consensus        85 ~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v  141 (149)
                      .||+|.......|+|-|++|++++...|..+-.++++||.+.+|++..-.-++.+..
T Consensus        44 ~PGeY~F~T~~~E~MevvsG~l~V~LpG~~eW~~~~aGesF~VpanssF~lkv~~~t  100 (106)
T 3eo6_A           44 HPGVYTLSSEVAETIRVLSGMAYYHAEGANDVQELHAGDSMVIPANQSYRLEVMEPL  100 (106)
T ss_dssp             CSEEEEECCSSCEEEEEEEEEEEEECTTCSSCEEEETTCEEEECSSSCEEEEEEEEE
T ss_pred             eeeEEEecCCCcEEEEEEEeEEEEECCCCccCEEECCCCEEEECCCCcEEEEECceE
Confidence            478888888899999999999999999975789999999999999999888887643

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=97.65  E-value=0.00071  Score=60.06  Aligned_cols=79  Identities=16%  Similarity=0.106  Sum_probs=59.3

Q ss_pred             hhhhhcCCceeeeEecCCcccc-cc-CCCceEEEEEEeEEEEEECC--c--------------------------ceEEE
Q 031987           69 SKLSELGVTSWPKWGCPPSKFP-WT-FTATETMYLLEGKVIVYVDG--R--------------------------EGSFE  118 (149)
Q Consensus        69 ~~L~~lGv~~~giWe~~pg~f~-~h-~~~dE~~yVLEG~v~vt~dg--g--------------------------~~~~~  118 (149)
                      ..|..+|+ ....-..+|+.+. -| .+.+|++||++|++.+....  +                          ...+.
T Consensus        38 ~~l~~~gv-~~~r~~i~pggl~~Ph~~~~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~~~~~~~~d~~qkv~~  116 (493)
T 2d5f_A           38 PELQCAGV-TVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRH  116 (493)
T ss_dssp             HHHHHHTC-EEEEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC-------------CSEEESCEEE
T ss_pred             hhhccCCE-EEEEEEeCCCcEeCceecCCCeEEEEEeCEEEEEEEeCCCccccccccccccccccccccccccccceEEE
Confidence            45666774 3456788899873 33 45799999999999998762  0                          02578


Q ss_pred             EcCCcEEEEcCCcEEEEEEcC--ceEEEEEec
Q 031987          119 IGTGDLVVFPKGMKITWDVIE--AVNKHYSLE  148 (149)
Q Consensus       119 i~aGD~v~~PkG~~~tW~v~e--~vrK~Yvi~  148 (149)
                      +++||+++||+|..+-|...+  +++-+.+++
T Consensus       117 l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d  148 (493)
T 2d5f_A          117 FNEGDVLVIPPGVPYWTYNTGDEPVVAISLLD  148 (493)
T ss_dssp             EETTEEEEECTTCCEEEEECSSSCEEEEEEEC
T ss_pred             ecCCCEEEECCCCcEEEEeCCCCCEEEEEEec
Confidence            999999999999999999875  466655554

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=97.64  E-value=0.00039  Score=61.25  Aligned_cols=79  Identities=16%  Similarity=0.120  Sum_probs=58.2

Q ss_pred             hhhhhcCCceeeeEecCCcccc-cc-CCCceEEEEEEeEEEEEEC--Ccc----------------------eEEEEcCC
Q 031987           69 SKLSELGVTSWPKWGCPPSKFP-WT-FTATETMYLLEGKVIVYVD--GRE----------------------GSFEIGTG  122 (149)
Q Consensus        69 ~~L~~lGv~~~giWe~~pg~f~-~h-~~~dE~~yVLEG~v~vt~d--gg~----------------------~~~~i~aG  122 (149)
                      ..|...|+. ...-..+|+.+. -| .+.+|++||++|++.+..-  ++.                      ....+++|
T Consensus        56 ~~l~~~gvs-~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~G  134 (459)
T 2e9q_A           56 DEFQCAGVN-MIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREG  134 (459)
T ss_dssp             HHHHHHTEE-EEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETT
T ss_pred             hhhccCceE-EEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCC
Confidence            456666763 455677898863 23 3689999999999999885  321                      14589999


Q ss_pred             cEEEEcCCcEEEEEEcC--ceEEEEEec
Q 031987          123 DLVVFPKGMKITWDVIE--AVNKHYSLE  148 (149)
Q Consensus       123 D~v~~PkG~~~tW~v~e--~vrK~Yvi~  148 (149)
                      |+++||+|..|-|...+  +++-+.+++
T Consensus       135 Dv~~iPaG~~H~~~N~g~~~l~~l~~~d  162 (459)
T 2e9q_A          135 DLLVVPAGVSHWMYNRGQSDLVLIVFAD  162 (459)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEEEE
T ss_pred             CEEEECCCCCEEEEeCCCCCEEEEEEec
Confidence            99999999999999875  455555543

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=97.63  E-value=0.00015  Score=62.87  Aligned_cols=73  Identities=15%  Similarity=0.235  Sum_probs=54.4

Q ss_pred             hhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECCcc---------------eEE--EEcCCcEEEEcCC
Q 031987           71 LSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGRE---------------GSF--EIGTGDLVVFPKG  130 (149)
Q Consensus        71 L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~---------------~~~--~i~aGD~v~~PkG  130 (149)
                      |..+|.. ...-...||..   |||....|+.||++|++++..-+..               ..+  .+++||+++||+|
T Consensus       244 L~~l~is-~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g  322 (416)
T 1uij_A          244 LRDLDIF-LSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAA  322 (416)
T ss_dssp             HHHHTEE-EEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC------------CCEEEEEEEEETTCEEEECTT
T ss_pred             chhcCcc-eEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCccccccccccccceEEEEEEecCCcEEEECCC
Confidence            4444532 34456678876   5777899999999999999764321               145  8999999999999


Q ss_pred             cEEEEEEcCceEEE
Q 031987          131 MKITWDVIEAVNKH  144 (149)
Q Consensus       131 ~~~tW~v~e~vrK~  144 (149)
                      +.|.....+.+.-.
T Consensus       323 ~~h~~~n~~~~~~l  336 (416)
T 1uij_A          323 YPFVVNATSNLNFL  336 (416)
T ss_dssp             CCEEEEESSSEEEE
T ss_pred             CeEEEEcCCCeEEE
Confidence            99999888765533

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=97.60  E-value=0.00072  Score=59.75  Aligned_cols=80  Identities=16%  Similarity=0.173  Sum_probs=60.1

Q ss_pred             hhhhhhcCCceeeeEecCCcccc--ccCCCceEEEEEEeEEEEEECC--cc-----------------------eEEEEc
Q 031987           68 QSKLSELGVTSWPKWGCPPSKFP--WTFTATETMYLLEGKVIVYVDG--RE-----------------------GSFEIG  120 (149)
Q Consensus        68 ~~~L~~lGv~~~giWe~~pg~f~--~h~~~dE~~yVLEG~v~vt~dg--g~-----------------------~~~~i~  120 (149)
                      ...|...|+. ...-..+|+.+.  .+.+.+|++||++|++.+....  +.                       ....++
T Consensus        40 ~~~l~~~gvs-~~r~~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~qk~~~l~  118 (476)
T 1fxz_A           40 NKPFQCAGVA-LSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFR  118 (476)
T ss_dssp             SHHHHHHTCE-EEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEEC
T ss_pred             ChhhccCceE-EEEEEEcCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhccccccccccccccccccceEEEEe
Confidence            3456666764 445678898873  3346899999999999888753  10                       257899


Q ss_pred             CCcEEEEcCCcEEEEEEcC--ceEEEEEec
Q 031987          121 TGDLVVFPKGMKITWDVIE--AVNKHYSLE  148 (149)
Q Consensus       121 aGD~v~~PkG~~~tW~v~e--~vrK~Yvi~  148 (149)
                      +||+++||+|..|-|...+  +++-+.+++
T Consensus       119 ~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d  148 (476)
T 1fxz_A          119 EGDLIAVPTGVAWWMYNNEDTPVVAVSIID  148 (476)
T ss_dssp             TTEEEEECTTCEEEEEECSSSCEEEEEEEC
T ss_pred             CCCEEEECCCCcEEEEeCCCCCEEEEEEec
Confidence            9999999999999999885  566666654

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=97.58  E-value=8.2e-05  Score=55.30  Aligned_cols=59  Identities=14%  Similarity=0.099  Sum_probs=43.3

Q ss_pred             eeEecCCcc-ccccCC-CceEEEEEEeEEEEEECCcceE--EEEcCCcEEEEcCCcEEE-EEEcCc
Q 031987           80 PKWGCPPSK-FPWTFT-ATETMYLLEGKVIVYVDGREGS--FEIGTGDLVVFPKGMKIT-WDVIEA  140 (149)
Q Consensus        80 giWe~~pg~-f~~h~~-~dE~~yVLEG~v~vt~dgg~~~--~~i~aGD~v~~PkG~~~t-W~v~e~  140 (149)
                      -..+..||. ++.|.+ .+|.+|||+|+++...++.  .  ..+++||.++.|+|..|+ ....+.
T Consensus        47 ~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~~g~~--~~~~~~~~Gd~~~~p~g~~H~p~~~~e~  110 (145)
T 2o1q_A           47 AIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRGGKA--AGGDTAIAPGYGYESANARHDKTEFPVA  110 (145)
T ss_dssp             EEEEECTTEEECCEEESSCEEEEEEEEEEEETTCGG--GTSEEEESSEEEEECTTCEESCCEEEEE
T ss_pred             EEEEECCCCCCCccCCCCCEEEEEEEeEEEEcCCCE--ecceEeCCCEEEEECcCCccCCeECCCC
Confidence            345666775 355543 5677999999999654333  4  899999999999999999 554444

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=97.58  E-value=0.00022  Score=63.08  Aligned_cols=63  Identities=24%  Similarity=0.389  Sum_probs=46.5

Q ss_pred             hhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECC--cceEE--EEcCCcEEEEcCCcEEE
Q 031987           71 LSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG--REGSF--EIGTGDLVVFPKGMKIT  134 (149)
Q Consensus        71 L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg--g~~~~--~i~aGD~v~~PkG~~~t  134 (149)
                      |..+|.. ...-...||..   |||...+|+.||++|++.+.+-+  +...+  ++++||+++||+|+.|.
T Consensus       318 L~~lgiS-~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfvvP~g~~h~  387 (465)
T 3qac_A          318 LRHLRLS-AAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIV  387 (465)
T ss_dssp             HHHHTCE-EEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEE
T ss_pred             cccccee-EEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEEECCCcEEE
Confidence            3444543 34456678775   57888999999999999988743  32344  48999999999999864

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=97.51  E-value=0.00053  Score=59.06  Aligned_cols=62  Identities=13%  Similarity=0.158  Sum_probs=52.0

Q ss_pred             eeeEecCCcccc-cc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987           79 WPKWGCPPSKFP-WT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN  142 (149)
Q Consensus        79 ~giWe~~pg~f~-~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr  142 (149)
                      +.++...||.-. .| ....+++||+||+..++++|.  .+..++||+|++|.|..++....++..
T Consensus       281 ~~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I~~~--~~~w~~gD~fvvP~w~~h~~~n~~~a~  344 (368)
T 3nw4_A          281 CEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNGE--TTKLEKGDMFVVPSWVPWSLQAETQFD  344 (368)
T ss_dssp             EEEEEECTTCBCCCEEESSCEEEEEEESCEEEEETTE--EEEECTTCEEEECTTCCEEEEESSSEE
T ss_pred             hheEEECCCCccCCeeccccEEEEEEeCcEEEEECCE--EEEecCCCEEEECCCCcEEEEeCCCEE
Confidence            556777777652 23 346799999999999999887  899999999999999999999887654

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=97.51  E-value=0.00018  Score=64.18  Aligned_cols=55  Identities=16%  Similarity=0.346  Sum_probs=43.3

Q ss_pred             eeEecCCccc---cccCCCceEEEEEEeEEEEEECC--cceEE--EEcCCcEEEEcCCcEEE
Q 031987           80 PKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG--REGSF--EIGTGDLVVFPKGMKIT  134 (149)
Q Consensus        80 giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg--g~~~~--~i~aGD~v~~PkG~~~t  134 (149)
                      ..-...||..   |||...+|+.||++|++++++=+  +...+  ++++||+++||+|+.|.
T Consensus       361 a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~  422 (496)
T 3ksc_A          361 EHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVA  422 (496)
T ss_dssp             EEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEE
T ss_pred             EEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEEECCCCEEE
Confidence            3455667775   57778999999999999998743  32344  49999999999999984

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=97.50  E-value=0.00057  Score=60.52  Aligned_cols=87  Identities=16%  Similarity=0.223  Sum_probs=61.1

Q ss_pred             eEEEeeCCChhhhhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEE--CCcce------------------
Q 031987           59 GVKIEKNPPQSKLSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYV--DGREG------------------  115 (149)
Q Consensus        59 ~V~i~~~ps~~~L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~--dgg~~------------------  115 (149)
                      .+.++.. ....|...|+.- ..-..+|+.+   ++| +.+|++||++|+..+..  .|+.+                  
T Consensus        34 ~~e~~d~-~~~~l~~~gvs~-~R~~i~P~gl~~Ph~h-~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~~~~~  110 (465)
T 3qac_A           34 LTEVWDS-NEQEFRCAGVSV-IRRTIEPHGLLLPSFT-SAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERIR  110 (465)
T ss_dssp             EEEECCT-TSHHHHHHTCEE-EEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEEECTTCCCCC----------------
T ss_pred             EEEEECC-CChhhcccceEE-EEEEEcCCcCcccEEc-CCCEEEEEEECcEEEEEecCCCCceeecchhccccccccccc
Confidence            4555543 233566667653 4456788876   345 89999999999998874  23212                  


Q ss_pred             --------------------EEEEcCCcEEEEcCCcEEEEEEc--CceEEEEEec
Q 031987          116 --------------------SFEIGTGDLVVFPKGMKITWDVI--EAVNKHYSLE  148 (149)
Q Consensus       116 --------------------~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yvi~  148 (149)
                                          ...+++||+++||+|..|-|...  +++.-+.+++
T Consensus       111 ~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d  165 (465)
T 3qac_A          111 EQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILID  165 (465)
T ss_dssp             --------------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEEC
T ss_pred             cccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEc
Confidence                                34899999999999999999886  4566666654

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=97.48  E-value=0.00057  Score=60.51  Aligned_cols=64  Identities=19%  Similarity=0.391  Sum_probs=47.1

Q ss_pred             hhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECC--cceEE--EEcCCcEEEEcCCcEEEEE
Q 031987           72 SELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG--REGSF--EIGTGDLVVFPKGMKITWD  136 (149)
Q Consensus        72 ~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg--g~~~~--~i~aGD~v~~PkG~~~tW~  136 (149)
                      ..+|.. ...-...||..   |||...+|+.||++|+++++.-+  +...+  ++++||+++||+|+.|.--
T Consensus       319 ~~lgiS-~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~~  389 (466)
T 3kgl_A          319 RFLRLS-ALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKR  389 (466)
T ss_dssp             HHHTCE-EEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEE
T ss_pred             ccCcee-eEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEEEECCCCeEEEE
Confidence            434433 34456677775   57778999999999999998743  31333  4999999999999999653

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=97.47  E-value=0.00028  Score=61.53  Aligned_cols=72  Identities=18%  Similarity=0.281  Sum_probs=53.2

Q ss_pred             hhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECCcc------------e--EE--EEcCCcEEEEcCCc
Q 031987           71 LSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGRE------------G--SF--EIGTGDLVVFPKGM  131 (149)
Q Consensus        71 L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~------------~--~~--~i~aGD~v~~PkG~  131 (149)
                      |..+|.. ...-...||..   |||....|+.||++|+++++.-+..            .  .+  ++++||+++||+|+
T Consensus       261 L~~l~is-~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~  339 (434)
T 2ea7_A          261 LKDLDVF-ISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAY  339 (434)
T ss_dssp             HHHHTEE-EEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEEEECTTC
T ss_pred             ccccCcc-eEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccCcceEEEEEEecCCcEEEECCCC
Confidence            4455533 33456677775   5777899999999999999775431            1  45  79999999999999


Q ss_pred             EEEEEEcCceEE
Q 031987          132 KITWDVIEAVNK  143 (149)
Q Consensus       132 ~~tW~v~e~vrK  143 (149)
                      .|.-...+.+.-
T Consensus       340 ~h~~~n~~~~~~  351 (434)
T 2ea7_A          340 PVAINATSNLNF  351 (434)
T ss_dssp             CEEEEESSSEEE
T ss_pred             eEEEEcCCCeEE
Confidence            998887766443

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=97.45  E-value=0.00053  Score=50.35  Aligned_cols=58  Identities=16%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             CCcc--ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987           85 PPSK--FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN  142 (149)
Q Consensus        85 ~pg~--f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr  142 (149)
                      .||+  +.......|.|-|++|++++...|..+-.++++|+.+.+|++..-.-++.+...
T Consensus        45 ~PGe~~YtF~T~~~E~MevvsG~l~V~Lpg~~eW~~~~aGesF~VpanssF~lkv~~~~~  104 (111)
T 3hqx_A           45 LPTEQPLTFETHVPERMEIISGECRVKIADSTESELFRAGQSFYVPGNSLFKIETDEVLD  104 (111)
T ss_dssp             CCCSSCEEEECSSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECTTCEEEEECSSCEE
T ss_pred             eccccceEEcCCCcEEEEEEEeEEEEEcCCcccCEEeCCCCEEEECCCCcEEEEECccee
Confidence            4677  777778999999999999999999767899999999999999999999887643

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=97.34  E-value=0.0022  Score=57.15  Aligned_cols=81  Identities=14%  Similarity=0.189  Sum_probs=57.8

Q ss_pred             ChhhhhhcCCceeeeEecCCccc--cccCCCceEEEEEEeEEEEEE--CCcce----------------------EEEEc
Q 031987           67 PQSKLSELGVTSWPKWGCPPSKF--PWTFTATETMYLLEGKVIVYV--DGREG----------------------SFEIG  120 (149)
Q Consensus        67 s~~~L~~lGv~~~giWe~~pg~f--~~h~~~dE~~yVLEG~v~vt~--dgg~~----------------------~~~i~  120 (149)
                      ....|..+|+.- ..-...|+.+  +.+....|++||++|++.+..  .+..+                      ...++
T Consensus        37 ~~~~L~~~gvs~-~R~~i~pggl~lPh~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~~~~d~~qk~~~l~  115 (496)
T 3ksc_A           37 NNKQFRCAGVAL-SRATLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFR  115 (496)
T ss_dssp             TSHHHHHHTCEE-EEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC---------------CCCCCCEEEEC
T ss_pred             cchhhccCCceE-EEEEecCCCEeCceEcCCCEEEEEEeCceEEEEEeCCCCccchhhhhcccccccccccchheeeccC
Confidence            334677778753 4456688876  222379999999999998877  22112                      24899


Q ss_pred             CCcEEEEcCCcEEEEEEcC--ceEEEEEec
Q 031987          121 TGDLVVFPKGMKITWDVIE--AVNKHYSLE  148 (149)
Q Consensus       121 aGD~v~~PkG~~~tW~v~e--~vrK~Yvi~  148 (149)
                      +||+++||+|..+-|....  ++.-+.+++
T Consensus       116 ~GDV~viPaG~~h~~~N~G~~~lv~v~~~d  145 (496)
T 3ksc_A          116 EGDIIAVPTGIVFWMYNDQDTPVIAVSLTD  145 (496)
T ss_dssp             TTEEEEECTTCEEEEEECSSSCEEEEEEEC
T ss_pred             CCCEEEECCCCcEEEEcCCCCCEEEEEEec
Confidence            9999999999999988875  455555554

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=97.29  E-value=0.0036  Score=55.93  Aligned_cols=82  Identities=13%  Similarity=0.122  Sum_probs=59.8

Q ss_pred             CChhhhhhcCCceeeeEecCCcccc-cc-CCCceEEEEEEeEEEEEECCcc-----------------------------
Q 031987           66 PPQSKLSELGVTSWPKWGCPPSKFP-WT-FTATETMYLLEGKVIVYVDGRE-----------------------------  114 (149)
Q Consensus        66 ps~~~L~~lGv~~~giWe~~pg~f~-~h-~~~dE~~yVLEG~v~vt~dgg~-----------------------------  114 (149)
                      +....|.-.|+. .-.-..+|+.+. -| .+..|++||++|+..+....-+                             
T Consensus        38 ~~~~~l~~~gvs-~~r~~i~p~gl~lPh~~~a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~~~~~~~~  116 (510)
T 3c3v_A           38 PNNQEFECAGVA-LSRLVLRRNALRRPFYSNAPQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEEDQ  116 (510)
T ss_dssp             TTSHHHHHHTCE-EEEEEECTTEEEEEEECSSCEEEEEEECCEEEEEECTTCCCCEEEECCC------------------
T ss_pred             CCCcccccCcEE-EEEEEECCCCCccceecCCCeEEEEEeCEEEEEEEeCCCcccccccccccccccccccccccccccc
Confidence            334456666765 345677888873 33 4689999999999998875410                             


Q ss_pred             ---------eEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEEec
Q 031987          115 ---------GSFEIGTGDLVVFPKGMKITWDVIE--AVNKHYSLE  148 (149)
Q Consensus       115 ---------~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yvi~  148 (149)
                               ....+++||+++||+|..+-|...+  +++-+.+++
T Consensus       117 ~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d  161 (510)
T 3c3v_A          117 SQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTD  161 (510)
T ss_dssp             --CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEEC
T ss_pred             ccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeC
Confidence                     0268999999999999999998885  466666654

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=97.11  E-value=0.00072  Score=51.92  Aligned_cols=63  Identities=17%  Similarity=0.220  Sum_probs=47.1

Q ss_pred             eEecCCcc-ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC----ceEEEEE
Q 031987           81 KWGCPPSK-FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE----AVNKHYS  146 (149)
Q Consensus        81 iWe~~pg~-f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e----~vrK~Yv  146 (149)
                      ..+..||. ++.|. ...|..|||+|++... +++  ...+++||.++.|+|..|+..+.+    ....+|+
T Consensus        47 lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~~-~~~--~~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v  115 (165)
T 3cjx_A           47 RASFAPGLTLPLHFHTGTVHMYTISGCWYYT-EYP--GQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIFM  115 (165)
T ss_dssp             EEEECTTCBCCEEEESSCEEEEEEESEEEET-TCT--TSCEETTEEEEECTTCEECEECCTTCSSCEEEEEE
T ss_pred             EEEECCCCcCCcccCCCCEEEEEEEEEEEEC-CCc--eEEECCCeEEEeCCCCceeeEeCCCCCCCcEEEEE
Confidence            45555664 46664 4789999999999873 222  478999999999999999999876    4445553

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=97.11  E-value=0.0012  Score=57.89  Aligned_cols=69  Identities=19%  Similarity=0.284  Sum_probs=50.8

Q ss_pred             hhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECCcc----------e----EEEEcCCcEEEEcCCcEE
Q 031987           71 LSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGRE----------G----SFEIGTGDLVVFPKGMKI  133 (149)
Q Consensus        71 L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~----------~----~~~i~aGD~v~~PkG~~~  133 (149)
                      |..+|.. ...-...||..   |||...+|+.||++|++++..-+..          .    ..++++||+++||+|+.|
T Consensus       276 L~~l~is-~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h  354 (445)
T 2cav_A          276 LRDLDIL-LNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPV  354 (445)
T ss_dssp             HHHHTEE-EEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------CCEEEEEEECTTCEEEECTTCCE
T ss_pred             cccCCCc-eEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCCcccccccCcceEEEEeEecCCcEEEEcCCcEE
Confidence            4444543 44556778876   5777899999999999988874321          2    445999999999999998


Q ss_pred             EEEEcCc
Q 031987          134 TWDVIEA  140 (149)
Q Consensus       134 tW~v~e~  140 (149)
                      .-...+.
T Consensus       355 ~~~n~~~  361 (445)
T 2cav_A          355 ALKAASD  361 (445)
T ss_dssp             EEEESSS
T ss_pred             EEEcCCC
Confidence            7766654

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=97.01  E-value=0.0017  Score=54.39  Aligned_cols=61  Identities=15%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             cCCcccccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           84 CPPSKFPWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        84 ~~pg~f~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      .++|+.... ...|=.+++|||+..|+.+|.  ++.+++||++.||+|..++|...+.-+-.++
T Consensus       214 ~G~Ges~~~~~~~d~wiWqLEGss~Vt~~~q--~~~L~~~DsLLIpa~~~y~~~r~~gsv~L~I  275 (286)
T 2qnk_A          214 YGQGSSEGLRQNVDVWLWQLEGSSVVTMGGR--RLSLAPDDSLLVLAGTSYAWERTQGSVALSV  275 (286)
T ss_dssp             ECSEEEEECCCSSCEEEEEEESCEEEEETTE--EEEECTTEEEEECTTCCEEEEECTTCEEEEE
T ss_pred             EcCCccccccCcCcEEEEEEcCceEEEECCe--EEeccCCCEEEecCCCeEEEEecCCeEEEEE
Confidence            445554322 234889999999999999998  9999999999999999999999877766665

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=96.98  E-value=0.0017  Score=50.78  Aligned_cols=56  Identities=25%  Similarity=0.328  Sum_probs=44.4

Q ss_pred             EecCCccc-c--ccCC------CceEEEEEEeEEEEEECCcc-------------------eEEEEcCCcEEEEcCCcEE
Q 031987           82 WGCPPSKF-P--WTFT------ATETMYLLEGKVIVYVDGRE-------------------GSFEIGTGDLVVFPKGMKI  133 (149)
Q Consensus        82 We~~pg~f-~--~h~~------~dE~~yVLEG~v~vt~dgg~-------------------~~~~i~aGD~v~~PkG~~~  133 (149)
                      ....||.. +  .|..      .+|.++++.|.+++..+|+.                   ..+.++|||.+.+|+|..|
T Consensus        58 l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvtIppg~~H  137 (175)
T 2y0o_A           58 LVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIPPNTKH  137 (175)
T ss_dssp             EEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEESSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEEECTTCCE
T ss_pred             EEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEECCccccCcceeccCCceeeecCCcEEEECCCCEEEECCCCcE
Confidence            44556654 3  4445      66999999999999998751                   2369999999999999999


Q ss_pred             EEEE
Q 031987          134 TWDV  137 (149)
Q Consensus       134 tW~v  137 (149)
                      .|..
T Consensus       138 ~f~a  141 (175)
T 2y0o_A          138 WFQA  141 (175)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9987

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=96.96  E-value=0.002  Score=56.12  Aligned_cols=71  Identities=11%  Similarity=0.176  Sum_probs=51.3

Q ss_pred             hhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECC--cc--------------------------eEEEE
Q 031987           71 LSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG--RE--------------------------GSFEI  119 (149)
Q Consensus        71 L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg--g~--------------------------~~~~i  119 (149)
                      |..+|+. ...-...|+..   +||....|+.||++|++.+..-+  +.                          -...+
T Consensus       258 L~~~gis-~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  336 (418)
T 3s7i_A          258 LQDLDMM-LTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTARL  336 (418)
T ss_dssp             HHHHTCE-EEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC-------------------CCEEEEEEEEEE
T ss_pred             hccCCee-EEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCccccccccccccccccccccccccceEEEeee
Confidence            4444543 34456677775   46667899999999999886532  20                          13568


Q ss_pred             cCCcEEEEcCCcEEEEEEcCceE
Q 031987          120 GTGDLVVFPKGMKITWDVIEAVN  142 (149)
Q Consensus       120 ~aGD~v~~PkG~~~tW~v~e~vr  142 (149)
                      ++||+++||+|..+.+...+++.
T Consensus       337 ~~GDV~vvP~G~~~~~~~~~~l~  359 (418)
T 3s7i_A          337 KEGDVFIMPAAHPVAINASSELH  359 (418)
T ss_dssp             CTTCEEEECTTCCEEEEESSCEE
T ss_pred             CCCCEEEECCCCEEEEECCCCEE
Confidence            99999999999999888776643

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=96.92  E-value=0.0079  Score=53.21  Aligned_cols=87  Identities=14%  Similarity=0.131  Sum_probs=59.7

Q ss_pred             EEEeeCCChhhhhhcCCceeeeEecCCcccc--ccCCCceEEEEEEeEEEEEEC--Ccce--------------------
Q 031987           60 VKIEKNPPQSKLSELGVTSWPKWGCPPSKFP--WTFTATETMYLLEGKVIVYVD--GREG--------------------  115 (149)
Q Consensus        60 V~i~~~ps~~~L~~lGv~~~giWe~~pg~f~--~h~~~dE~~yVLEG~v~vt~d--gg~~--------------------  115 (149)
                      +.++. +....|..+|+. ...-+..|+.+.  .+.+..|++||++|++.+..-  |..+                    
T Consensus        28 ~e~w~-~~~~~L~~~gvs-~~r~~i~p~Gl~lPh~~~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~~~~~~~  105 (466)
T 3kgl_A           28 IEVWD-HHAPQLRCSGVS-FVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQ  105 (466)
T ss_dssp             EEECC-TTSHHHHHHTEE-EEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC--------
T ss_pred             EEEEC-CCChhhccCCeE-EEEEEECCCCEeCCeeCCCCeEEEEEeCeEEEEEecCCCcchhhccccccccccccccccc
Confidence            33443 334567667764 456788888872  334699999999999987642  1111                    


Q ss_pred             ----------------------------------------EEEEcCCcEEEEcCCcEEEEEEcC--ceEEEEEec
Q 031987          116 ----------------------------------------SFEIGTGDLVVFPKGMKITWDVIE--AVNKHYSLE  148 (149)
Q Consensus       116 ----------------------------------------~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Yvi~  148 (149)
                                                              ...+++||+++||+|+.+-|...+  +++-...++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~d  180 (466)
T 3kgl_A          106 GQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLD  180 (466)
T ss_dssp             ---------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEEEEc
Confidence                                                    148999999999999999998874  455555543

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=96.92  E-value=0.0014  Score=49.88  Aligned_cols=56  Identities=16%  Similarity=0.127  Sum_probs=43.5

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~  138 (149)
                      .-..+..||.. +.|. ...|..|||+|+..+.  +.  ...+.+||.++.|+|..|+..+.
T Consensus        44 v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~--e~--~~~~~~Gd~~~~P~g~~H~~~~~  101 (159)
T 3ebr_A           44 ITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYK--EH--DWVAHAGSVVYETASTRHTPQSA  101 (159)
T ss_dssp             EEEEEECSSCBCCCEEESSCEEEEEEESCEEET--TS--SCCBCTTCEEEECSSEEECEEES
T ss_pred             EEEEEECCCCCcccccCCCCEEEEEEEeEEEEe--CC--CeEECCCeEEEECCCCcceeEeC
Confidence            34566677754 5554 3688899999998874  23  25899999999999999999887

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=96.87  E-value=0.0015  Score=51.43  Aligned_cols=57  Identities=16%  Similarity=0.278  Sum_probs=44.9

Q ss_pred             cccccC-CCceEEEEEEeEEEEEECCcce-EEEEcCCcEEEEcCCcEEEEEEc----CceEEEE
Q 031987           88 KFPWTF-TATETMYLLEGKVIVYVDGREG-SFEIGTGDLVVFPKGMKITWDVI----EAVNKHY  145 (149)
Q Consensus        88 ~f~~h~-~~dE~~yVLEG~v~vt~dgg~~-~~~i~aGD~v~~PkG~~~tW~v~----e~vrK~Y  145 (149)
                      .|..|+ +.-|++||++|+++ .++++.. .+.+.+||++++|+|..+.|...    ++.+-.+
T Consensus        21 ~~~~~~~~~~~i~~v~~G~~~-~i~~~~~~~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~~~   83 (276)
T 3gbg_A           21 IFNNLYINDYKMFWIDSGIAK-LIDKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSV   83 (276)
T ss_dssp             EEEEEECSSCEEEEESSSCEE-EEETTTTEEEEECTTEEEEECTTCEEEEEEEECCSSCEEEEE
T ss_pred             hccHhhhcceEEEEEecCceE-EECCccceeEEEcCCCEEEEcCCCceeeccccCCCcceEEEE
Confidence            344454 57899999999999 8765312 89999999999999999999987    6655443

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=96.77  E-value=0.0027  Score=56.44  Aligned_cols=66  Identities=18%  Similarity=0.347  Sum_probs=54.2

Q ss_pred             eeeEecCCcc---ccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           79 WPKWGCPPSK---FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        79 ~giWe~~pg~---f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      ..+|.+..+-   +-...+.||++++-+|++.|..+=|  ...+++||.++||+|++.+++..++. .-|++
T Consensus       159 I~~y~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRGi~frv~l~~p~-Rgyi~  227 (471)
T 1eyb_A          159 IHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFG--KMLVQPNEICVIQRGMRFSIDVFEET-RGYIL  227 (471)
T ss_dssp             EEEEEECSCCCSEEEEESSEEEEEEEEESCEEEEETTE--EEEECTTEEEEECTTCCEEEECSSSE-EEEEE
T ss_pred             EEEEeCCCCcccceeecCCCCEEEEEEeCCEEEEEecc--cEEeccCCEEEECCccEEEEeeCCCc-eEEEE
Confidence            4568887653   2234689999999999999999999  89999999999999999999998744 44554

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.60  E-value=0.0051  Score=50.08  Aligned_cols=64  Identities=17%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             eEecCCccc---cccCCCceEEEEEEeEEEEEE---CCcceEEEEcC-C---cEEEEcCCcEEEEEEcC--ceEEEE
Q 031987           81 KWGCPPSKF---PWTFTATETMYLLEGKVIVYV---DGREGSFEIGT-G---DLVVFPKGMKITWDVIE--AVNKHY  145 (149)
Q Consensus        81 iWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~---dgg~~~~~i~a-G---D~v~~PkG~~~tW~v~e--~vrK~Y  145 (149)
                      .-...||..   +||....|.++|++|++.+..   ..+ +.+++.. |   |.+++|+|+.|......  ++.-.|
T Consensus       276 ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~  351 (369)
T 3st7_A          276 VNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDD-EIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIM  351 (369)
T ss_dssp             EEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCC-CCEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEE
T ss_pred             EEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCC-cEEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEEE
Confidence            344556654   456678999999999999953   233 5788888 8   99999999999999975  344444

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=96.39  E-value=0.013  Score=46.66  Aligned_cols=56  Identities=16%  Similarity=0.086  Sum_probs=43.7

Q ss_pred             eeeEecCCcc-ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           79 WPKWGCPPSK-FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        79 ~giWe~~pg~-f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .-..+.+||. ++.|. +..|.+|||+|++.  + ++   ..+.|||.++.|+|..|+..+.+.
T Consensus        45 ~~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~--d-~~---~~~~~Gd~~~~P~g~~H~p~a~~g  102 (223)
T 3o14_A           45 TSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ--D-EH---GDYPAGTYVRNPPTTSHVPGSAEG  102 (223)
T ss_dssp             EEEEEECTTEECCCEECTTCEEEEEEEEEEE--E-TT---EEEETTEEEEECTTCEECCEESSC
T ss_pred             EEEEEECCCCCcccccCCCCEEEEEEEeEEE--E-CC---eEECCCeEEEeCCCCccccEeCCC
Confidence            3456667775 46664 48999999999976  2 23   589999999999999999887655

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=95.73  E-value=0.01  Score=45.29  Aligned_cols=61  Identities=16%  Similarity=0.153  Sum_probs=43.4

Q ss_pred             eeEecCCcc-ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEE-EEEcCc
Q 031987           80 PKWGCPPSK-FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKIT-WDVIEA  140 (149)
Q Consensus        80 giWe~~pg~-f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~t-W~v~e~  140 (149)
                      -+-+..||. |+.|+ +..|.+|||||+......+......++||+.++-|+|..|+ |...+.
T Consensus        49 ~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~~Gd~~~~~~~~aGsYv~ePpGs~H~p~~~~~~  112 (153)
T 3bal_A           49 AIFNCPAGSSFASHIHAGPGEYFLTKGKMEVRGGEQEGGSTAYAPSYGFESSGALHGKTFFPVE  112 (153)
T ss_dssp             EEEEECTTEEECCEEESSCEEEEEEESEEEETTCGGGTSEEEESSEEEEECTTCEESCCEESSC
T ss_pred             EEEEeCCCCCccCccCCCCEEEEEEEEEEEecCccccCccccCCCeEEEcCCCCcccceeCCCC
Confidence            345666775 56664 57888999999997743332014788999999999999998 444443

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=95.39  E-value=0.071  Score=45.85  Aligned_cols=57  Identities=7%  Similarity=0.106  Sum_probs=40.8

Q ss_pred             eeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCc-EEEEEEc
Q 031987           80 PKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM-KITWDVI  138 (149)
Q Consensus        80 giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~-~~tW~v~  138 (149)
                      -.|+..++......+.-.++.+++|++++..+++  ...+++||++++|++. ..+.+-.
T Consensus       327 ~~~~l~~~~~~~~~~~~~il~v~~G~~~l~~~~~--~~~l~~G~~~fvpa~~~~~~i~g~  384 (394)
T 2wfp_A          327 SLHDLALQETSIGQHSAAILFCVEGEAVLRKDEQ--RLVLKPGESAFIGADESPVNASGT  384 (394)
T ss_dssp             EEEECCSSCEEECCSSCEEEEEEEEEEEEEETTE--EEEECTTCEEEECGGGCCEEEEEE
T ss_pred             EEEEEcCCeEEecCCCcEEEEEEeceEEEEECCe--EEEEccCcEEEEeCCCceEEEEee
Confidence            3354444433333445689999999999998765  7899999999999984 4444433

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=94.93  E-value=0.2  Score=41.39  Aligned_cols=66  Identities=12%  Similarity=0.085  Sum_probs=51.2

Q ss_pred             eeeEecCCccc-cccCCCceEEEE-EEeEEEEEECCcceEEEE-cC---------CcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           79 WPKWGCPPSKF-PWTFTATETMYL-LEGKVIVYVDGREGSFEI-GT---------GDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~~~dE~~yV-LEG~v~vt~dgg~~~~~i-~a---------GD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      .++++.++|.- .......|++.| |.|.++|+.+|.  .+.. +.         .|++++|+|...+.+...+ -++|+
T Consensus        31 f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~g~--~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~-~~~~v  107 (270)
T 2qjv_A           31 FDVWQLXAGESITLPSDERERCLVLVAGLASVXAADS--FFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETD-LELAV  107 (270)
T ss_dssp             EEEEEECTTCEEEECCSSEEEEEEEEESCEEEEETTE--EEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSS-EEEEE
T ss_pred             EEEEEecCCCEEEecCCCcEEEEEEecceEEEEECCE--EEeccccccccccCCCCcEEEECCCCEEEEEecCC-ceEEE
Confidence            66788888874 455677788776 899999999987  6655 33         4999999999999998877 55665


Q ss_pred             e
Q 031987          147 L  147 (149)
Q Consensus       147 i  147 (149)
                      .
T Consensus       108 ~  108 (270)
T 2qjv_A          108 C  108 (270)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=94.47  E-value=0.12  Score=38.67  Aligned_cols=56  Identities=7%  Similarity=-0.009  Sum_probs=42.3

Q ss_pred             CCccc---cccCCCceEEEEEEeEEEEEECCcc--eEEEEcCCc-EEEEcCCcEEEEEEcCc
Q 031987           85 PPSKF---PWTFTATETMYLLEGKVIVYVDGRE--GSFEIGTGD-LVVFPKGMKITWDVIEA  140 (149)
Q Consensus        85 ~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~--~~~~i~aGD-~v~~PkG~~~tW~v~e~  140 (149)
                      .||..   +.|...+|++++++|++++..++|.  +++.+...+ .+.+|+|..++....++
T Consensus        43 ~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~~~~~L~~~~~gL~IppgvWh~~~~~s~  104 (141)
T 2pa7_A           43 KGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSS  104 (141)
T ss_dssp             CSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCT
T ss_pred             CCCCEECcCcCCCceEEEEEEccEEEEEEECCcEEEEEEECCCCcEEEeCCCEEEEEEEcCC
Confidence            36664   4456789999999999999998873  344455544 49999999999887654

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=94.32  E-value=0.14  Score=42.54  Aligned_cols=36  Identities=17%  Similarity=0.320  Sum_probs=31.2

Q ss_pred             CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCc
Q 031987           94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM  131 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~  131 (149)
                      ..-.++.+++|++++..++  +...+++||++++|++.
T Consensus       268 ~~~~il~v~~G~~~l~~~~--~~~~l~~G~~~~vpa~~  303 (319)
T 1qwr_A          268 ESFLICSVIEGSGLLKYED--KTCPLKKGDHFILPAQM  303 (319)
T ss_dssp             SSCEEEEEEEEEEEEEETT--EEEEEETTCEEEECTTC
T ss_pred             CccEEEEEEcCeEEEEECC--EEEEEcCCcEEEEeCCC
Confidence            4567899999999999854  48899999999999986

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=94.17  E-value=0.15  Score=42.13  Aligned_cols=40  Identities=15%  Similarity=0.301  Sum_probs=32.6

Q ss_pred             CCc-eEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCc-EEEEE
Q 031987           94 TAT-ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM-KITWD  136 (149)
Q Consensus        94 ~~d-E~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~-~~tW~  136 (149)
                      ..- .++.+++| +++..+++  ...+++||++++|++. ..+.+
T Consensus       246 ~~~~~il~v~~G-~~i~~~~~--~~~l~~G~~~~ipa~~~~~~i~  287 (300)
T 1zx5_A          246 GGVMNILYAAEG-YFILRGKE--TADLHRGYSCLVPASTDSFTVE  287 (300)
T ss_dssp             CSBCEEEEEEES-CEEEESSS--EEEECTTCEEEECTTCCEEEEE
T ss_pred             CCceEEEEEccc-EEEEeCCe--EEEEccceEEEEeCCCceEEEE
Confidence            444 78899999 99998655  7899999999999987 45554

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=93.54  E-value=0.4  Score=36.11  Aligned_cols=61  Identities=11%  Similarity=0.171  Sum_probs=43.6

Q ss_pred             eeEecCCccc-cccCC-CceEEEEEEeEEEEEECC-------------------------------------cceEEEEc
Q 031987           80 PKWGCPPSKF-PWTFT-ATETMYLLEGKVIVYVDG-------------------------------------REGSFEIG  120 (149)
Q Consensus        80 giWe~~pg~f-~~h~~-~dE~~yVLEG~v~vt~dg-------------------------------------g~~~~~i~  120 (149)
                      -+|-..+|.. +.|++ .+=+...+.|+=++..-.                                     ..-..+++
T Consensus       127 ~~wiG~~gs~t~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~  206 (235)
T 4gjz_A          127 NAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILS  206 (235)
T ss_dssp             EEEEECTTCEEEEECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEEC
T ss_pred             EEEEeCCCCCceeeeccccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEEC
Confidence            3677777765 45765 566667789998887510                                     00256899


Q ss_pred             CCcEEEEcCCcEEEEEEcCc
Q 031987          121 TGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus       121 aGD~v~~PkG~~~tW~v~e~  140 (149)
                      |||+++||+|+.|.=+..+.
T Consensus       207 pGD~LyiP~gW~H~V~~l~~  226 (235)
T 4gjz_A          207 PGEILFIPVKYWHYVRALDL  226 (235)
T ss_dssp             TTCEEEECTTCEEEEEESSS
T ss_pred             CCCEEEeCCCCcEEEEECCC
Confidence            99999999999998776653

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=92.89  E-value=1.1  Score=40.30  Aligned_cols=43  Identities=14%  Similarity=0.209  Sum_probs=30.0

Q ss_pred             CChhhhhhcCCceeeeEecCCccc-ccc-CCCceEEEEEEeEEEEE
Q 031987           66 PPQSKLSELGVTSWPKWGCPPSKF-PWT-FTATETMYLLEGKVIVY  109 (149)
Q Consensus        66 ps~~~L~~lGv~~~giWe~~pg~f-~~h-~~~dE~~yVLEG~v~vt  109 (149)
                      +....|..+|+.- ..-...|+.+ .-| .+..|++||++|++.+-
T Consensus        38 ~~~p~l~~~Gvs~-~R~~i~p~Gl~lPh~~~a~el~yV~qG~g~~G   82 (531)
T 3fz3_A           38 FNQGDFQCAGVAA-SRITIQRNGLHLPSYSNAPQLIYIVQGRGVLG   82 (531)
T ss_dssp             TTSHHHHHHTEEE-EEEEECTTEEEEEEEESSCEEEEEEECEEEEE
T ss_pred             CCChhhccCcceE-EEEEecCCCEeCCccCCCCeEEEEEECcEEEE
Confidence            3445677778753 4456677776 223 36999999999998775

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=92.66  E-value=0.54  Score=40.98  Aligned_cols=46  Identities=17%  Similarity=0.284  Sum_probs=36.4

Q ss_pred             CCCceEEEEEEeEEEEEECCcceE-EEEcCCcEEEEcCCcEEEEEEc
Q 031987           93 FTATETMYLLEGKVIVYVDGREGS-FEIGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        93 ~~~dE~~yVLEG~v~vt~dgg~~~-~~i~aGD~v~~PkG~~~tW~v~  138 (149)
                      ...-.++.+++|++++..+++... ..+++||++++|++...+.+..
T Consensus       377 ~~~~~illv~~G~g~i~~~~~~~~~~~l~~G~~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          377 LNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTAD  423 (440)
T ss_dssp             CSSCEEEEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred             CCCcEEEEEEeCeEEEEeCCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence            456789999999999998654012 7999999999999966666654

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=92.61  E-value=1.5  Score=32.46  Aligned_cols=66  Identities=18%  Similarity=0.217  Sum_probs=48.2

Q ss_pred             eeeeEecC--Ccccc-cc---C---CCceEEEEEEeEEEEEE--CCc----ceEEEEcCCcEEEEcCCcEEEEEE-cCce
Q 031987           78 SWPKWGCP--PSKFP-WT---F---TATETMYLLEGKVIVYV--DGR----EGSFEIGTGDLVVFPKGMKITWDV-IEAV  141 (149)
Q Consensus        78 ~~giWe~~--pg~f~-~h---~---~~dE~~yVLEG~v~vt~--dgg----~~~~~i~aGD~v~~PkG~~~tW~v-~e~v  141 (149)
                      +.++|..+  |..+. .|   .   +.-+.+.||+|++++..  ++|    ++.....+|+..++|++..++-+. .+++
T Consensus        13 ~tP~~t~~tlP~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsdd~   92 (127)
T 3bb6_A           13 STPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDT   92 (127)
T ss_dssp             ECCCBCTTTSCGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTC
T ss_pred             ecCCCCcccChHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCCCE
Confidence            35677666  66663 34   2   35699999999999883  322    255679999999999999999997 5555


Q ss_pred             EE
Q 031987          142 NK  143 (149)
Q Consensus       142 rK  143 (149)
                      +-
T Consensus        93 ~f   94 (127)
T 3bb6_A           93 YF   94 (127)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=92.54  E-value=0.71  Score=35.31  Aligned_cols=58  Identities=21%  Similarity=0.318  Sum_probs=41.8

Q ss_pred             ecCCccc-cccCC--CceEEEEEEeEEEEEE---CCcc----eEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           83 GCPPSKF-PWTFT--ATETMYLLEGKVIVYV---DGRE----GSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        83 e~~pg~f-~~h~~--~dE~~yVLEG~v~vt~---dgg~----~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .-.||.. +.|-+  ...+++||+|+++.+.   +++.    ....+++||++++|+|..|+-+....
T Consensus        75 ~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~  142 (171)
T 3eqe_A           75 NIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTS  142 (171)
T ss_dssp             EECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSS
T ss_pred             EECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCC
Confidence            3445654 34544  4678889999999864   2220    26789999999999999999887643

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=92.39  E-value=0.84  Score=35.12  Aligned_cols=62  Identities=11%  Similarity=0.080  Sum_probs=46.4

Q ss_pred             CCccc---cccCCCceEEEEEEeEEEEEECCcc---------eEEEEc---CCcEEEEcCCcEEEEEEcCc--eEEEEE
Q 031987           85 PPSKF---PWTFTATETMYLLEGKVIVYVDGRE---------GSFEIG---TGDLVVFPKGMKITWDVIEA--VNKHYS  146 (149)
Q Consensus        85 ~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~---------~~~~i~---aGD~v~~PkG~~~tW~v~e~--vrK~Yv  146 (149)
                      .+|..   |+|....+++++++|++.+...|.+         ..+.+.   ..-.+++|+|+.|.+.+.+.  ..-.|.
T Consensus        61 ~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~ly~  139 (174)
T 3ejk_A           61 LPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANC  139 (174)
T ss_dssp             CBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEEE
T ss_pred             CCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEEEE
Confidence            45654   3455689999999999999885542         256677   56799999999999998755  444554

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=91.78  E-value=0.31  Score=40.77  Aligned_cols=44  Identities=16%  Similarity=0.183  Sum_probs=37.8

Q ss_pred             CCCceEEEE-EEeEEEEEECCcceEEEEcCCcEEEEcCCcE-EEEEEc
Q 031987           93 FTATETMYL-LEGKVIVYVDGREGSFEIGTGDLVVFPKGMK-ITWDVI  138 (149)
Q Consensus        93 ~~~dE~~yV-LEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~-~tW~v~  138 (149)
                      ....|++.| |.|.++|+.+|.  .++++.-|++++|+|.+ .+....
T Consensus        76 l~~rE~~iV~lgG~~~V~vdg~--~f~lg~~dalYVp~G~~~v~~as~  121 (289)
T 1ywk_A           76 LERRELGVINIGGPGFIEIDGA--KETMKKQDGYYIGKETKHVRFSSE  121 (289)
T ss_dssp             TTTEEEEEEECSSCEEEEETTE--EEEECTTCEEEECTTCCCEEEEES
T ss_pred             CCCcEEEEEEccCeEEEEECCE--EEecCCCCEEEeCCCCeEEEEEec
Confidence            467888877 799999999987  78999999999999976 777763

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=91.64  E-value=0.75  Score=36.41  Aligned_cols=48  Identities=19%  Similarity=0.304  Sum_probs=35.9

Q ss_pred             ecCCcc-ccccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEE
Q 031987           83 GCPPSK-FPWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDV  137 (149)
Q Consensus        83 e~~pg~-f~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v  137 (149)
                      ...||. +..|. ...|+ +||+|++.  . ++   ..+.+||-+..|.|..++...
T Consensus       152 r~~~G~~~~~~~hgG~Ei-lVL~G~~~--d-~~---~~~~~GsWlR~P~gs~h~~~a  201 (223)
T 3o14_A          152 KLEPGANLTSEAAGGIEV-LVLDGDVT--V-ND---EVLGRNAWLRLPEGEALSATA  201 (223)
T ss_dssp             EECTTCEEEECCSSCEEE-EEEEEEEE--E-TT---EEECTTEEEEECTTCCEEEEE
T ss_pred             EECCCCccCCCCCCcEEE-EEEEeEEE--E-CC---ceECCCeEEEeCCCCccCcEE
Confidence            334554 33332 67886 99999975  3 33   589999999999999999988

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=91.00  E-value=0.7  Score=37.50  Aligned_cols=45  Identities=13%  Similarity=0.110  Sum_probs=36.6

Q ss_pred             eEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987           97 ETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN  142 (149)
Q Consensus        97 E~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr  142 (149)
                      =++||++|++++..+++ +...+.+||.++|..+-..+.+..++.+
T Consensus       204 ~~l~v~~G~v~v~g~~~-~~~~l~~gd~~~l~~~~~l~l~a~~~a~  248 (256)
T 2vec_A          204 AYLQSIHGKFHALTHHE-EKAALTCGDGAFIRDEANITLVADSPLR  248 (256)
T ss_dssp             EEEEEEESCEEEEETTE-EEEEECTTCEEEEESCSEEEEEESSSEE
T ss_pred             EEEEEEECEEEECCccc-cceEECCCCEEEECCCCeEEEEeCCCCE
Confidence            68899999999976544 4678999999999988888887766654

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=90.37  E-value=0.48  Score=38.47  Aligned_cols=43  Identities=9%  Similarity=0.099  Sum_probs=35.3

Q ss_pred             cccccC--CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCc
Q 031987           88 KFPWTF--TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM  131 (149)
Q Consensus        88 ~f~~h~--~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~  131 (149)
                      .|+.|-  +-+.+-||++|+++-.+.-| ....++|||+-++-+|.
T Consensus        76 gf~~HPHrg~EtvTyvl~G~~~H~DS~G-n~~~i~~GdvQ~MtAG~  120 (256)
T 2vec_A           76 AFQPRTYPKVDILNVILDGEAEYRDSEG-NHVQASAGEALLLSTQP  120 (256)
T ss_dssp             EEEEECCSSEEEEEEEEESEEEEEETTS-CEEEEETTEEEEECCCT
T ss_pred             ccCCcCCCCcEEEEEEEeeEEEEEeCCC-CEEEECCCeEEEEECCC
Confidence            577663  45668899999999999866 68999999999997763

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=90.25  E-value=0.74  Score=36.06  Aligned_cols=54  Identities=13%  Similarity=0.072  Sum_probs=39.1

Q ss_pred             CCccc-ccc-CCCceEEEEEEeEEEEEE----CCc-----ceEEEEcCCcEEEEcC--CcEEEEEEc
Q 031987           85 PPSKF-PWT-FTATETMYLLEGKVIVYV----DGR-----EGSFEIGTGDLVVFPK--GMKITWDVI  138 (149)
Q Consensus        85 ~pg~f-~~h-~~~dE~~yVLEG~v~vt~----dgg-----~~~~~i~aGD~v~~Pk--G~~~tW~v~  138 (149)
                      .||.. +.| .....+++||+|+.+.+.    ++|     +.+..+++||+++|+.  |.-|+-...
T Consensus        87 ~PGq~spiHdH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~  153 (208)
T 2gm6_A           87 GPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNA  153 (208)
T ss_dssp             CTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEES
T ss_pred             CCCcccCcccCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccC
Confidence            45544 333 235899999999998865    322     1368899999999999  877877743

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=90.17  E-value=0.53  Score=39.21  Aligned_cols=52  Identities=29%  Similarity=0.488  Sum_probs=41.3

Q ss_pred             CCCceEEEE-EEeEEEEEECCcceEEEEcCCcEEEEcCCcE-EEEEEcCc--eEEEEE
Q 031987           93 FTATETMYL-LEGKVIVYVDGREGSFEIGTGDLVVFPKGMK-ITWDVIEA--VNKHYS  146 (149)
Q Consensus        93 ~~~dE~~yV-LEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~-~tW~v~e~--vrK~Yv  146 (149)
                      ....|++.| |.|.++|+.+|.  .++++.-|++++|+|.+ .+....+.  =-|+|+
T Consensus        76 l~~rE~~iV~l~G~~~V~vdG~--~f~lg~~dalYVp~g~~~v~~as~da~~~a~fav  131 (282)
T 1xru_A           76 LERRELGVINIGGAGTITVDGQ--CYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYY  131 (282)
T ss_dssp             TTTEEEEEEECSSCEEEEETTE--EEEECTTCEEEECTTCCCEEEEESCTTSCCCEEE
T ss_pred             cCCcEEEEEEccCeEEEEECCE--EEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEE
Confidence            367788776 799999999987  78999999999999996 88876642  135554

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=89.64  E-value=0.36  Score=35.65  Aligned_cols=44  Identities=14%  Similarity=0.241  Sum_probs=33.3

Q ss_pred             EecCCcccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEE
Q 031987           82 WGCPPSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVV  126 (149)
Q Consensus        82 We~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~  126 (149)
                      -...||..-.+  -..+.+++|++|.+.+..++| ....+++||.+-
T Consensus        98 ~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g-~~~~l~~G~~fG  143 (202)
T 3bpz_A           98 EVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-KEMKLSDGSYFG  143 (202)
T ss_dssp             EEECTTCEEECTTSBCCEEEEEEECEEEEECTTS-CCEEEETTCEEC
T ss_pred             eEECCCCEEEECCCcCCeEEEEeccEEEEEECCC-eEEEEcCCCEec
Confidence            34556665443  246789999999999998777 567899999874

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=89.09  E-value=0.66  Score=31.76  Aligned_cols=44  Identities=16%  Similarity=0.108  Sum_probs=33.6

Q ss_pred             EecCCcccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEE
Q 031987           82 WGCPPSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVV  126 (149)
Q Consensus        82 We~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~  126 (149)
                      -...+|..-..  -..+.+++|++|.+.+..+|. ....+++||.+-
T Consensus        49 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~-~~~~~~~G~~fG   94 (139)
T 3ocp_A           49 VEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGV-KLCTMGPGKVFG   94 (139)
T ss_dssp             EEECSSCEEECTTSCCCEEEEEEECCEEEEETTE-EEEEECTTCEES
T ss_pred             EecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCE-EEEEeCCCCEec
Confidence            34456665443  357889999999999988776 677899999874

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=88.93  E-value=1.2  Score=38.83  Aligned_cols=60  Identities=22%  Similarity=0.291  Sum_probs=44.2

Q ss_pred             eeEecCCcc--ccccCC-CceEEEEEEeEEEEEECCc-------------------ceEEEEcCCcEEEEcCCcEEEEEE
Q 031987           80 PKWGCPPSK--FPWTFT-ATETMYLLEGKVIVYVDGR-------------------EGSFEIGTGDLVVFPKGMKITWDV  137 (149)
Q Consensus        80 giWe~~pg~--f~~h~~-~dE~~yVLEG~v~vt~dgg-------------------~~~~~i~aGD~v~~PkG~~~tW~v  137 (149)
                      -.|-..+|.  ++.||+ +|=|..-++|+=+..+-.-                   ....+++|||++++|+|+.|.=+.
T Consensus       142 n~y~~~~g~~g~~~H~D~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s  221 (442)
T 2xdv_A          142 NVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADT  221 (442)
T ss_dssp             EEEEECTTCBCSCSEECSSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEEC
T ss_pred             ceEECCCCCCCccceECCcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEe
Confidence            347777775  457876 5667777999988874110                   136789999999999999998776


Q ss_pred             cC
Q 031987          138 IE  139 (149)
Q Consensus       138 ~e  139 (149)
                      .+
T Consensus       222 ~~  223 (442)
T 2xdv_A          222 PA  223 (442)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=88.00  E-value=0.81  Score=32.04  Aligned_cols=45  Identities=13%  Similarity=0.099  Sum_probs=34.7

Q ss_pred             eEecCCcccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEE
Q 031987           81 KWGCPPSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVV  126 (149)
Q Consensus        81 iWe~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~  126 (149)
                      .....+|..-..  -..+.+++|++|.+.+..+|. ....+++||.+-
T Consensus        63 ~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~-~~~~~~~G~~fG  109 (154)
T 3pna_A           63 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFG  109 (154)
T ss_dssp             EEEECTTCEEECTTSCCCEEEEEEESCEEEEETTE-EEEEECTTCEEC
T ss_pred             EEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCE-EEEEecCCCEee
Confidence            345566665443  357889999999999999777 677899999874

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=87.79  E-value=0.99  Score=36.18  Aligned_cols=43  Identities=19%  Similarity=0.209  Sum_probs=36.3

Q ss_pred             ccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCc
Q 031987           88 KFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM  131 (149)
Q Consensus        88 ~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~  131 (149)
                      .|++|  .+-+.+-|+++|+++-.+.-| ....++|||+-.+-+|.
T Consensus        53 gf~~HPHrg~EtvTyvl~G~~~H~DS~G-n~~~i~~GdvQ~MtAG~   97 (242)
T 1tq5_A           53 GFGTHPHKDMEILTYVLEGTVEHQDSMG-NKEQVPAGEFQIMSAGT   97 (242)
T ss_dssp             EEEEEEECSCEEEEEEEESEEEEEESSS-CEEEEETTCEEEEECTT
T ss_pred             cCCCcCCCCcEEEEEEEEeEEEEEeCCC-CcEEECCCcEEEEECCC
Confidence            57665  567789999999999999866 68999999999997774

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=87.25  E-value=1.1  Score=31.07  Aligned_cols=44  Identities=18%  Similarity=0.338  Sum_probs=33.7

Q ss_pred             ecCCcccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEE
Q 031987           83 GCPPSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVF  127 (149)
Q Consensus        83 e~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~  127 (149)
                      ...+|..-+.  -..+.+++|++|.+++..++. ....+++||.+--
T Consensus        54 ~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~-~~~~~~~G~~fG~   99 (160)
T 4f8a_A           54 HCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDE-VVAILGKGDVFGD   99 (160)
T ss_dssp             EECTTCEEECTTSBCCEEEEEEESEEEEEETTE-EEEEEETTCEEEC
T ss_pred             eeCCCCEEEeCCCCccEEEEEEeeEEEEEECCE-EEEEecCCCEeCc
Confidence            4445555443  347899999999999999776 6778999999874

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=86.70  E-value=0.37  Score=33.00  Aligned_cols=44  Identities=9%  Similarity=-0.092  Sum_probs=31.9

Q ss_pred             EecC-CccccccC--CCceEEEEEEeEEEEEECCcceEEEEcCCcEEE
Q 031987           82 WGCP-PSKFPWTF--TATETMYLLEGKVIVYVDGREGSFEIGTGDLVV  126 (149)
Q Consensus        82 We~~-pg~f~~h~--~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~  126 (149)
                      -... +|..-..-  ..+.+++|++|.+.+..++| ....+++||.+-
T Consensus        42 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g-~~~~l~~G~~fG   88 (134)
T 2d93_A           42 EVVEQAGAIILEDGQELDSWYVILNGTVEISHPDG-KVENLFMGNSFG   88 (134)
T ss_dssp             EEECSSSCEEECTTCEECEEEECCBSCEEEECSSS-CEEEECTTCEES
T ss_pred             EEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCC-cEEEecCCCccC
Confidence            3445 56554432  35779999999999998766 458899999773

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=85.99  E-value=3.3  Score=32.00  Aligned_cols=61  Identities=13%  Similarity=0.225  Sum_probs=42.7

Q ss_pred             Cccc---ccc--CCCceEEEEEEeEE-EEEECCcc--------eEEEEcC--CcEEEEcCCcEEEEEEcCc-eEEEEE
Q 031987           86 PSKF---PWT--FTATETMYLLEGKV-IVYVDGRE--------GSFEIGT--GDLVVFPKGMKITWDVIEA-VNKHYS  146 (149)
Q Consensus        86 pg~f---~~h--~~~dE~~yVLEG~v-~vt~dgg~--------~~~~i~a--GD~v~~PkG~~~tW~v~e~-vrK~Yv  146 (149)
                      +|..   |+|  ..+.+.+++++|++ .+.+|...        ..+++.+  +..+++|+|+.|.+.+.+. ..-.|.
T Consensus        57 ~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  134 (185)
T 1ep0_A           57 RGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYK  134 (185)
T ss_dssp             TTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEe
Confidence            5654   455  56899999999996 55554431        3455655  6899999999999998765 333343

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=85.46  E-value=4.8  Score=33.43  Aligned_cols=58  Identities=12%  Similarity=0.252  Sum_probs=40.3

Q ss_pred             eEecCCc-cccccCC-CceEEEEEEeEEEEEEC-C------------------------------------cceEEEEcC
Q 031987           81 KWGCPPS-KFPWTFT-ATETMYLLEGKVIVYVD-G------------------------------------REGSFEIGT  121 (149)
Q Consensus        81 iWe~~pg-~f~~h~~-~dE~~yVLEG~v~vt~d-g------------------------------------g~~~~~i~a  121 (149)
                      .|-...| .+..|++ ++=+...+.|+=++..- .                                    .....+++|
T Consensus       145 ~~~gp~g~~~~~H~D~~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~p  224 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTP  224 (342)
T ss_dssp             EEEECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECT
T ss_pred             EEEeCCCCCCCCeECChhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEECC
Confidence            5665533 3467776 56666668898666633 1                                    014678999


Q ss_pred             CcEEEEcCCcEEEEEEc
Q 031987          122 GDLVVFPKGMKITWDVI  138 (149)
Q Consensus       122 GD~v~~PkG~~~tW~v~  138 (149)
                      ||++++|+|+.|.=+..
T Consensus       225 GD~LyiP~gwwH~v~s~  241 (342)
T 1vrb_A          225 GTMLYLPRGLWHSTKSD  241 (342)
T ss_dssp             TCEEEECTTCEEEEECS
T ss_pred             CcEEEeCCCccEEEEEC
Confidence            99999999999987766

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=85.35  E-value=2  Score=34.35  Aligned_cols=42  Identities=12%  Similarity=0.102  Sum_probs=33.3

Q ss_pred             CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987           95 ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN  142 (149)
Q Consensus        95 ~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr  142 (149)
                      ..=++||++|++++   ++   ..+.+||.++|..|-..+.+..+..+
T Consensus       181 ~~~~~~v~~G~v~v---~g---~~l~~gd~~~~~~~~~l~l~a~~~a~  222 (242)
T 1tq5_A          181 RRVWIQVVKGNVTI---NG---VKASTSDGLAIWDEQAISIHADSDSE  222 (242)
T ss_dssp             CEEEEEEEESEEEE---TT---EEEETTCEEEEESCSCEEEEESSSEE
T ss_pred             cEEEEEEccCcEEE---CC---EEeCCCCEEEECCCCeEEEEeCCCCE
Confidence            45679999999988   34   36999999999988877777766654

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=84.71  E-value=1.3  Score=32.36  Aligned_cols=44  Identities=9%  Similarity=0.149  Sum_probs=32.2

Q ss_pred             ecCCcccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEE
Q 031987           83 GCPPSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVV  126 (149)
Q Consensus        83 e~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~  126 (149)
                      ...||..-.+  -..+.+++|++|.+.+...+|.....+++||.+-
T Consensus        98 ~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fG  143 (198)
T 2ptm_A           98 VFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFG  143 (198)
T ss_dssp             EECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEES
T ss_pred             eeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEec
Confidence            4456665443  3467899999999999976663566899999873

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=84.30  E-value=0.94  Score=33.61  Aligned_cols=43  Identities=16%  Similarity=0.101  Sum_probs=32.8

Q ss_pred             ecCCcccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEE
Q 031987           83 GCPPSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVV  126 (149)
Q Consensus        83 e~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~  126 (149)
                      ...+|..-..  -..+.+++|++|.+.+..++. ....+++||.+-
T Consensus        34 ~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~-~~~~~~~g~~fG   78 (246)
T 3of1_A           34 SVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDN-KVNSSGPGSSFG   78 (246)
T ss_dssp             EECTTCEEECTTCCCCEEEEEEECCEEEESTTS-CCEEECTTCEEC
T ss_pred             EECCCCEEEecCCCCCEEEEEEeeEEEEEECCE-EEEecCCCCeee
Confidence            3445554332  357899999999999999877 678899999874

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=83.95  E-value=0.74  Score=30.99  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=28.9

Q ss_pred             hhhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEE
Q 031987           70 KLSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYV  110 (149)
Q Consensus        70 ~L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~  110 (149)
                      -|..+|.. ...-.-.+|..   +||....|++||++|++.+..
T Consensus        30 ~Ln~lgls-~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~   72 (79)
T 1dgw_X           30 QLRDLDIL-LNCLQMNEGALFVPHYNSRATVILVANEGRAEVEL   72 (79)
T ss_dssp             HHHTTTEE-EEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEE
T ss_pred             ccCcCCcc-eEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEE
Confidence            46667654 33345566664   577789999999999888876

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=83.39  E-value=1.5  Score=33.86  Aligned_cols=56  Identities=18%  Similarity=0.307  Sum_probs=38.1

Q ss_pred             EecCCccc-ccc-CCCceEEEEEEeEE-EEEE--CCcceEEE------EcCCcE--EEEcCCcEEEEEEc
Q 031987           82 WGCPPSKF-PWT-FTATETMYLLEGKV-IVYV--DGREGSFE------IGTGDL--VVFPKGMKITWDVI  138 (149)
Q Consensus        82 We~~pg~f-~~h-~~~dE~~yVLEG~v-~vt~--dgg~~~~~------i~aGD~--v~~PkG~~~tW~v~  138 (149)
                      +-.+++.+ .|| ...||+-|...|.. ++..  +|| ....      +.+|+.  +++|+|+.-.=+..
T Consensus        54 fLL~~g~~S~~HRv~sdEiW~~~~G~pL~l~l~~~dg-~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~  122 (170)
T 1yud_A           54 FLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEG-ELTTAQLGLDLAAGERPQFLVPKGCIFGSAMN  122 (170)
T ss_dssp             EEEETTCCEEEEECSSCEEEEEEEESCEEEEEECTTS-CEEEEEESSCTTTTEESCEEECTTCEEEEEES
T ss_pred             EEECCCCCCeeEEcCCCEEEEEEcCCCEEEEEEcCCC-CEEEEEeCCCcccCceeEEEECCCCEEEEEEC
Confidence            33444544 466 46899999999985 6665  333 2344      567998  99999987655544

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=83.31  E-value=5.1  Score=30.87  Aligned_cols=61  Identities=16%  Similarity=0.156  Sum_probs=42.5

Q ss_pred             Cccc---ccc--CCCceEEEEEEeEE-EEEECCcc--------eEEEEcC--CcEEEEcCCcEEEEEEcCc-eEEEEE
Q 031987           86 PSKF---PWT--FTATETMYLLEGKV-IVYVDGRE--------GSFEIGT--GDLVVFPKGMKITWDVIEA-VNKHYS  146 (149)
Q Consensus        86 pg~f---~~h--~~~dE~~yVLEG~v-~vt~dgg~--------~~~~i~a--GD~v~~PkG~~~tW~v~e~-vrK~Yv  146 (149)
                      +|..   |+|  ..+..++++++|++ .+.+|...        ..+++.+  +..+++|+|+.|.+.+.+. ..-.|.
T Consensus        58 ~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  135 (184)
T 2ixk_A           58 RGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYK  135 (184)
T ss_dssp             TTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCCEEEEEe
Confidence            5654   344  45899999999996 55555431        3455665  5889999999999998765 333343

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=83.26  E-value=7.1  Score=28.47  Aligned_cols=65  Identities=15%  Similarity=0.164  Sum_probs=47.0

Q ss_pred             eeeEecC--Ccccc-ccC---CCceEEEEEEeEEEEEE-C-Cc----ceEEEEcCCcEEEEcCCcEEEEEEcCceEE
Q 031987           79 WPKWGCP--PSKFP-WTF---TATETMYLLEGKVIVYV-D-GR----EGSFEIGTGDLVVFPKGMKITWDVIEAVNK  143 (149)
Q Consensus        79 ~giWe~~--pg~f~-~h~---~~dE~~yVLEG~v~vt~-d-gg----~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK  143 (149)
                      .++|..+  |..+. .|.   +.-.-.-||+|++++.. + ++    .+...+.+|+..++|+...+.=+..++++-
T Consensus        16 tP~~t~~tlP~~l~~~HnTK~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sdD~~f   92 (119)
T 3dl3_A           16 TPFFTKDNVPEALLTHHNTAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQF   92 (119)
T ss_dssp             CCCBCTTTCCHHHHSSBCCCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEE
T ss_pred             CCCCChhhchHHHHhccCCCCcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECCCeEE
Confidence            4556655  44442 232   34567889999999994 2 22    156789999999999999999988888765

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=83.21  E-value=6.2  Score=35.03  Aligned_cols=59  Identities=22%  Similarity=0.335  Sum_probs=43.8

Q ss_pred             eEecCCcc--ccccCC-CceEEEEEEeEEEEEECCc-----------------------ceEEEEcCCcEEEEcCCcEEE
Q 031987           81 KWGCPPSK--FPWTFT-ATETMYLLEGKVIVYVDGR-----------------------EGSFEIGTGDLVVFPKGMKIT  134 (149)
Q Consensus        81 iWe~~pg~--f~~h~~-~dE~~yVLEG~v~vt~dgg-----------------------~~~~~i~aGD~v~~PkG~~~t  134 (149)
                      .|-..+|.  |..|++ +|=|+.=++|+=+..+-.-                       .....++|||++++|+|+.|.
T Consensus       168 ~Y~tp~Gs~g~~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H~  247 (489)
T 4diq_A          168 VYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQ  247 (489)
T ss_dssp             EEEECSSBCCSCCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEEE
T ss_pred             EEecCCCcccccCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCceE
Confidence            57777774  567886 5656666999888776220                       025889999999999999998


Q ss_pred             EEEcC
Q 031987          135 WDVIE  139 (149)
Q Consensus       135 W~v~e  139 (149)
                      =+..+
T Consensus       248 ~~s~~  252 (489)
T 4diq_A          248 AECQD  252 (489)
T ss_dssp             EEBCS
T ss_pred             EEecC
Confidence            88875

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=82.61  E-value=1.5  Score=32.39  Aligned_cols=44  Identities=23%  Similarity=0.318  Sum_probs=34.1

Q ss_pred             ecCCcccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEE
Q 031987           83 GCPPSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVF  127 (149)
Q Consensus        83 e~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~  127 (149)
                      ...||..-.+  -..+.+++|++|.+.+..+|. ....+++||.+--
T Consensus       102 ~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~-~~~~l~~G~~fGe  147 (212)
T 3ukn_A          102 FCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNT-VLAILGKGDLIGS  147 (212)
T ss_dssp             EECTTCEEECTTSBCCEEEEEEECCEEEESSSC-EEEEECTTCEEEC
T ss_pred             EeCCCCEEEECCCcccEEEEEEecEEEEEECCe-EEEEecCCCCcCc
Confidence            4456665443  246899999999999998776 6778999998863

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=81.60  E-value=1.4  Score=36.52  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             CCCceEEEEEEe----EEEEEECCc------------c-----eEEEEcCCcEEEEcCCcEEEE
Q 031987           93 FTATETMYLLEG----KVIVYVDGR------------E-----GSFEIGTGDLVVFPKGMKITW  135 (149)
Q Consensus        93 ~~~dE~~yVLEG----~v~vt~dgg------------~-----~~~~i~aGD~v~~PkG~~~tW  135 (149)
                      ++..|..|+|+.    ++.+-.++.            .     ..+.+++||++++|+|..|..
T Consensus       115 ~gKpE~~y~L~~~~~~~~~~G~~~~~~e~l~~~i~~~~~~~lLn~v~l~pGd~~~ipaGt~HA~  178 (319)
T 1qwr_A          115 LGKTECWYIIDCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYYVPSGTLHAL  178 (319)
T ss_dssp             CCCCEEEEEEEECTTCEEEEEECCSSHHHHHHHHHTTCHHHHEEEEECCTTCEEEECTTCCEEE
T ss_pred             CCCCEEEEEccCCCchhheeCCCCCCHHHHHHHHHcCCHHHhceEEEcCCCCEEEcCCCCceEe
Confidence            578999999996    232222210            0     478999999999999998853

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=81.56  E-value=4  Score=35.73  Aligned_cols=59  Identities=10%  Similarity=0.075  Sum_probs=42.0

Q ss_pred             eEecCCccc-cccCCCce---EEEEEEeEEEEEE-----------------------------CCcceEEEEcCCcEEEE
Q 031987           81 KWGCPPSKF-PWTFTATE---TMYLLEGKVIVYV-----------------------------DGREGSFEIGTGDLVVF  127 (149)
Q Consensus        81 iWe~~pg~f-~~h~~~dE---~~yVLEG~v~vt~-----------------------------dgg~~~~~i~aGD~v~~  127 (149)
                      .|-+.+|.+ ++|++...   +..++.|+=++..                             +.. -..++.|||+++|
T Consensus       200 ~~mGp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~-~~v~l~pGE~LfI  278 (451)
T 2yu1_A          200 CLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDC-QRIELKQGYTFVI  278 (451)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCC-EEEEECTTCEEEE
T ss_pred             EEEccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccc-eEEEECCCcEEEe
Confidence            356666665 46766443   6678888876652                             123 5788999999999


Q ss_pred             cCCcEEEEEEcCc
Q 031987          128 PKGMKITWDVIEA  140 (149)
Q Consensus       128 PkG~~~tW~v~e~  140 (149)
                      |.||.|.=...+.
T Consensus       279 PsGWwH~V~nled  291 (451)
T 2yu1_A          279 PSGWIHAVYTPTD  291 (451)
T ss_dssp             CTTCEEEEECSSC
T ss_pred             CCCceEEEecCCC
Confidence            9999988776653

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=81.16  E-value=2  Score=32.97  Aligned_cols=43  Identities=14%  Similarity=0.128  Sum_probs=32.8

Q ss_pred             ecCCcccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEE
Q 031987           83 GCPPSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVV  126 (149)
Q Consensus        83 e~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~  126 (149)
                      ...+|..-.+  -..+.+++|++|.+.+..+|. ....+++||.+-
T Consensus        66 ~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g~-~~~~l~~G~~fG  110 (291)
T 2qcs_B           66 SFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFG  110 (291)
T ss_dssp             EECTTCEEECTTSBCCEEEEEEECCEEEEETTE-EEEEECTTCEEC
T ss_pred             EECCCCEEEeCCCCCceEEEEeeeEEEEEECCe-EEEEcCCCCccc
Confidence            3445655433  346889999999999999776 778899999874

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=80.70  E-value=7.9  Score=30.00  Aligned_cols=54  Identities=7%  Similarity=-0.044  Sum_probs=38.4

Q ss_pred             CCccc-cccCC--CceEEEEEEeEEEEEE----CCc------ceEEEEcCCcEEEE-cCCcEEEEEEc
Q 031987           85 PPSKF-PWTFT--ATETMYLLEGKVIVYV----DGR------EGSFEIGTGDLVVF-PKGMKITWDVI  138 (149)
Q Consensus        85 ~pg~f-~~h~~--~dE~~yVLEG~v~vt~----dgg------~~~~~i~aGD~v~~-PkG~~~tW~v~  138 (149)
                      .||.. ++|-+  ...+++||+|+.+-+.    +++      .....+++||+.+| |++--|+-...
T Consensus        78 ~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~  145 (200)
T 3eln_A           78 GEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENV  145 (200)
T ss_dssp             CTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECC
T ss_pred             CCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECC
Confidence            45554 45543  5799999999999885    221      13688999999999 77667766654

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=80.26  E-value=2  Score=33.26  Aligned_cols=41  Identities=17%  Similarity=0.147  Sum_probs=31.7

Q ss_pred             CCcccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEE
Q 031987           85 PPSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVV  126 (149)
Q Consensus        85 ~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~  126 (149)
                      .+|..-..  -..+.+++|++|.+.+..+|. ....+.+||.+-
T Consensus        68 ~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~-~~~~~~~G~~fG  110 (299)
T 3shr_A           68 GKDSCIIKEGDVGSLVYVMEDGKVEVTKEGV-KLCTMGPGKVFG  110 (299)
T ss_dssp             CTTCEEECTTCBCCCEEEEEESCEEEEETTE-EEEEECTTCEES
T ss_pred             CCCCEEEcCCCcCceEEEEEEEEEEEEECCE-EEEEeCCCCeee
Confidence            45554332  346889999999999998887 778899999875

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=80.09  E-value=3.4  Score=34.57  Aligned_cols=46  Identities=17%  Similarity=0.517  Sum_probs=36.1

Q ss_pred             CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcE-EEEEE--cCceEEEE
Q 031987           93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMK-ITWDV--IEAVNKHY  145 (149)
Q Consensus        93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~-~tW~v--~e~vrK~Y  145 (149)
                      +..-| +|||+|++.+   |+   ..+.+|+-.++|+|.. ..|.+  .+.+.-.+
T Consensus       110 ~ad~E-~fVL~G~i~~---G~---~~l~~h~Y~f~PaGV~~~~~kv~~~~g~~iL~  158 (303)
T 2qdr_A          110 TADLE-IFVIKGAIQL---GE---WQLNKHSYSFIPAGVRIGSWKVLGGEEAEILW  158 (303)
T ss_dssp             SSCEE-EEEEESEEEE---TT---EEECTTEEEEECTTCCBCCEEEETTSCEEEEE
T ss_pred             ccceE-EEEEEeEEEe---CC---EEecCCceEEecCCCccCceeecCCCCcEEEE
Confidence            34566 8999999887   45   7899999999999995 78888  66655443

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=80.06  E-value=4.1  Score=33.08  Aligned_cols=45  Identities=18%  Similarity=0.345  Sum_probs=33.6

Q ss_pred             CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcC-C----cEEEEEEcCceE
Q 031987           94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPK-G----MKITWDVIEAVN  142 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~Pk-G----~~~tW~v~e~vr  142 (149)
                      ...=++||++|++++  +|+  ...+.+||.++|.. |    -..+.+..+..+
T Consensus       187 ~~~~~lyv~~G~v~v--~g~--~~~l~~~d~~~~~~~~~~~~~~l~l~a~~~a~  236 (277)
T 2p17_A          187 HYNGFLYILEGSGVF--GAD--NIEGKAGQALFFSRHNRGEETELNVTAREKLR  236 (277)
T ss_dssp             TCEEEEEEEESEEEE--TTT--TEEEETTEEEEECCCCTTCEEEEEEEESSSEE
T ss_pred             CCEEEEEEEeCeEEE--CCC--ceEeCCCcEEEEcCCCCCccceEEEEeCCCcE
Confidence            456789999999877  442  25799999999996 7    666766655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1o5ua_	88	b.82.1.8 (A:) Hypothetical protein TM1112 {Thermot	3e-33
d2pyta1	128	b.82.1.24 (A:100-227) Ethanolamine utilization pro	1e-12
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	3e-04
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	0.002
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	3e-04
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	5e-04
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	7e-04
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	0.001
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	0.001
d1sefa_	250	b.82.1.11 (A:) Hypothetical protein EF2996 {Entero	0.001
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	0.003
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	0.003

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]} Length = 88

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

 Score =  110 bits (276), Expect = 3e-33
 Identities = 43/88 (48%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 60  VKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEI 119
           VKIEK P   KL EL V  WP W    S+F W +   ET Y+LEGKV V  +  +  + I
Sbjct: 2   VKIEK-PTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGK-KYVI 59

Query: 120 GTGDLVVFPKGMKITWDVIEAVNKHYSL 147
             GDLV FPKG++  W V+E V KHY+L
Sbjct: 60  EKGDLVTFPKGLRCRWKVLEPVRKHYNL 87

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Length = 128

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

 Score = 58.8 bits (142), Expect = 1e-12
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 82  WGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV 141
                + FPWT    E   +LEG++ V  +G         GD++  PKG  I +    +V
Sbjct: 59  MQWDNAFFPWTLNYDEIDMVLEGELHVRHEGET--MIAKAGDVMFIPKGSSIEFGTPTSV 116

Query: 142 NKHY 145
              Y
Sbjct: 117 RFLY 120

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 90  PWTFTATETMYLLEGKVIVYVDGREG---SFEIGTGDLVVFPKGM 131
            W     E  Y + GK  + V   +G   +F    GD+   P  M
Sbjct: 266 HWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAM 310

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 91  WTFTATETMYLLEGKVIVYV---DGREGSFEIGTGDLVVFPKGMKITWDVIEAVNK 143
           W   A E  Y++ G   V +    GR    ++G GDL  FP G       I+A+ +
Sbjct: 89  WHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSG---LPHSIQALEE 140

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 84  CPPSKFPWTFT-ATETMYLLEGKVIVYV---DGREGSFEIGTGDLVVFPKGM 131
            P +        A   +++L G+ I+ +   D R+ S+ +  GD    P G 
Sbjct: 52  KPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD-SYNLHPGDAQRIPAGT 102

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 5/106 (4%)

Query: 26  PIPKSKPTTPRVSKSKPVMASTTTTTAATAEIFGVKIEKNPPQSKLSELGVTSWPKWGCP 85
                    P  +    + +          ++  +   +     +   +  +  PK    
Sbjct: 169 AKLAELTELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQKNTDGQFI-VVSSEGPKGDRI 227

Query: 86  PSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM 131
                +    TET Y LEG++ ++ DG+E   ++  GD +  P   
Sbjct: 228 V--DHYHEYHTETFYCLEGQMTMWTDGQE--IQLNPGDFLHVPANT 269

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 36.1 bits (83), Expect = 7e-04
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 95  ATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGM 131
           A   + +L G  I+ +  +    S+ + +GD +  P G 
Sbjct: 60  ADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGT 98

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 87  SKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMK 132
             F  T      +Y+LEGK +  ++      E+  GD +       
Sbjct: 202 IPFAETHVMEHGLYVLEGKAVYRLNQDW--VEVEAGDFMWLRAFCP 245

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 76  VTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITW 135
           V   P  G           A   ++++EG++ + + G+     +  G     P G     
Sbjct: 71  VELAPNGGSDKP--EQDPNAEAVLFVVEGELSLTLQGQV--HAMQPGGYAFIPPGADYKV 126

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Length = 250

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 89  FPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMK 132
           +  T       YL+ G+ +  +D     + +  GD +     + 
Sbjct: 183 YIETHVQEHGAYLISGQGMYNLDNEW--YPVEKGDYIFMSAYVP 224

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 95  ATETMYLLEGKVIVYVDGREG--SFEIGTGDLVVFPKGM 131
           +   + +LEG+ I+ +   +G  ++++  GD +    G 
Sbjct: 61  SDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGT 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	99.97
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	99.71
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	98.96
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	98.95
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.9
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	98.83
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	98.78
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	98.71
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.68
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.64
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	98.6
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.56
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.56
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.54
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	98.52
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.52
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	98.47
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	98.46
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.44
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	98.44
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.42
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.41
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	98.39
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.35
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	98.34
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.34
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	98.31
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	98.27
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.26
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.22
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.21
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.11
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	98.1
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	98.06
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	98.05
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.05
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.02
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	97.98
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	97.91
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	97.72
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	97.65
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.63
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	97.6
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	97.58
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	97.56
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	97.22
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	97.17
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	96.71
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	96.58
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	96.46
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	96.33
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	96.29
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	96.26
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	94.85
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	94.54
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	93.1
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	92.01
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	91.31
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	88.26
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	87.81
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	87.47
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	86.12
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	83.51
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	83.17
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	81.93

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=4.8e-31  Score=185.75  Aligned_cols=87  Identities=49%  Similarity=0.917  Sum_probs=83.4

Q ss_pred             eEEEeeCCChhhhhhcCCceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc
Q 031987           59 GVKIEKNPPQSKLSELGVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        59 ~V~i~~~ps~~~L~~lGv~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~  138 (149)
                      +|+|++ |++++|.++|+.+||+|+|+||+|+|+|++||+||||||+++++.+|| ++++++|||+++||+|+.++|++.
T Consensus         1 ~i~i~~-~~~~~l~~lGv~~~gvW~~~pg~f~~~y~~~E~~~ileG~v~i~~~~G-~~~~~~aGD~~~~p~G~~~~W~v~   78 (88)
T d1o5ua_           1 EVKIEK-PTPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDG-KKYVIEKGDLVTFPKGLRCRWKVL   78 (88)
T ss_dssp             CCEEEC-CCHHHHHHHTGGGSCEEEECSEEEEEECSSCEEEEEEEEEEEEEETTC-CEEEEETTCEEEECTTCEEEEEEE
T ss_pred             CcEEec-CCHHHHHhcCCcccceEeecCcEEEEEcCccEEEEEEEeEEEEEcCCC-CEEEEeCCCEEEECCCCEEEEEEC
Confidence            478887 699999999999999999999999999999999999999999999988 889999999999999999999999


Q ss_pred             CceEEEEEe
Q 031987          139 EAVNKHYSL  147 (149)
Q Consensus       139 e~vrK~Yvi  147 (149)
                      +++||+|++
T Consensus        79 e~v~K~yvi   87 (88)
T d1o5ua_          79 EPVRKHYNL   87 (88)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEEEEe
Confidence            999999986

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.71  E-value=2.3e-17  Score=120.02  Aligned_cols=73  Identities=25%  Similarity=0.359  Sum_probs=68.2

Q ss_pred             CCceeeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEecC
Q 031987           75 GVTSWPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSLEK  149 (149)
Q Consensus        75 Gv~~~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi~~  149 (149)
                      +....+.|+++||.++||+++||++|||+|+++++++|+  .+.+++||+++||+|..|+|++.+..+++|++.|
T Consensus        52 ~~~~~~~~~~~~g~~~~~~~~~E~~~vl~G~~~~~~~g~--~~~l~~Gd~~~~p~g~~h~~~~~~~~~~~~v~~P  124 (128)
T d2pyta1          52 SSMAAGFMQWDNAFFPWTLNYDEIDMVLEGELHVRHEGE--TMIAKAGDVMFIPKGSSIEFGTPTSVRFLYVAWP  124 (128)
T ss_dssp             CSSEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEETTE--EEEEETTCEEEECTTCEEEEEEEEEEEEEEEEES
T ss_pred             CceEEEEEEECCCccceeCCccEEEEEEEeEEEEEECCE--EEEecCCCEEEECCCCEEEEEeCCCEEEEEEECC
Confidence            346689999999999999999999999999999999876  9999999999999999999999999999999854

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=2.1e-09  Score=73.13  Aligned_cols=68  Identities=16%  Similarity=0.141  Sum_probs=55.4

Q ss_pred             eeeeEecCCccc-cccC--CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEEe
Q 031987           78 SWPKWGCPPSKF-PWTF--TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYSL  147 (149)
Q Consensus        78 ~~giWe~~pg~f-~~h~--~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yvi  147 (149)
                      ....+.-.||.. ++|+  ..+|++|||+|++++..+|+  .+.+++||++++|+|..|.++..  ++++-..++
T Consensus        29 ~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v~  101 (105)
T d1v70a_          29 LYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE--EALLAPGMAAFAPAGAPHGVRNESASPALLLVVT  101 (105)
T ss_dssp             EEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE--EEEECTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             EEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEEeee--EEEecceEEEEeCCCCEEEeEECCCCCEEEEEEE
Confidence            356777888864 5665  45899999999999999887  89999999999999999999987  456554444

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.95  E-value=1.9e-09  Score=75.50  Aligned_cols=61  Identities=13%  Similarity=0.292  Sum_probs=50.9

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ...+...||.. ++|+ +.+|++|||+|+++++.+|+ +.+++++||++++|+|..|.+.....
T Consensus        28 v~~~~l~pG~~~p~H~H~~~e~~~Vl~G~~~~~v~~~-e~~~v~~Gd~i~ip~~~~H~~~n~~~   90 (108)
T d2b8ma1          28 INHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQ-EPHNYKEGNIVYVPFNVKMLIQNINS   90 (108)
T ss_dssp             EEEEEEETTCBCCCEECSSCEEEEEEESEEEEEETTS-CCEEEETTCEEEECTTCEEEEECCSS
T ss_pred             EEEEEECCCCcChhhcccccEEEEEEeeeEEEEEecc-cEEEeecceEeeccCCceEEEEcCCC
Confidence            44566677765 4554 47899999999999999997 67899999999999999999997743

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.90  E-value=5.2e-09  Score=73.05  Aligned_cols=67  Identities=13%  Similarity=0.248  Sum_probs=57.5

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      ...+...||.. ++|. +.+|++|||+|+++++.+|+  .+.+++||++++|+|..|..+..++.+-.+++
T Consensus        39 i~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~~~~--~~~l~~Gd~~~ip~~~~H~~~a~~~~~~l~~v  107 (112)
T d1yhfa1          39 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQE--TYRVAEGQTIVMPAGIPHALYAVEAFQMLLVV  107 (112)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTE--EEEEETTCEEEECTTSCEEEEESSCEEEEEEE
T ss_pred             EEEEEECCCCCcceEECCCCEEEEEEeCEEEEEEccE--EEEecCCEEEEcCCCCeEEeEECCCcEEEEEE
Confidence            45677788864 5554 48999999999999999887  89999999999999999999999998777653

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=5.7e-09  Score=72.92  Aligned_cols=67  Identities=10%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEEe
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYSL  147 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yvi  147 (149)
                      ...++..||.. ++|+ +.+|++||++|+++++.+|+  .+.+++||++++|+|..|.++..  ++++-..++
T Consensus        38 ~~~~~i~pG~~~~~H~H~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~ii  108 (114)
T d1vj2a_          38 MRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQG--EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLI  108 (114)
T ss_dssp             EEEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSC--EEEEETTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             EEEEEECCCCCCCceECCCcEEEEEEEceeEEEEeee--eeEEecCeEEEEcCCCeEEEEeCCCCCEEEEEEE
Confidence            44567778754 5664 47899999999999999887  89999999999999999999975  456666555

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.78  E-value=1.9e-08  Score=68.83  Aligned_cols=60  Identities=15%  Similarity=0.127  Sum_probs=49.7

Q ss_pred             eeeEecCCccc---cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           79 WPKWGCPPSKF---PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        79 ~giWe~~pg~f---~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .-..+..||.-   +.|. ..+|++|||+|++++..+|.  .+.+++||+++||+|..|.|.....
T Consensus        24 ~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~--~~~l~~GD~~~~~~~~~H~~~n~~~   87 (99)
T d1y9qa2          24 IFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQ--WHELQQGEHIRFFSDQPHGYAAVTE   87 (99)
T ss_dssp             EEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTE--EEEECTTCEEEEECSSSEEEEESSS
T ss_pred             EEEEEEeCCcEeccccccCCcEEEEEEEcCceEEEecce--EEEecCCCEEEECCCCeEEEEeCCc
Confidence            34456667742   3454 46899999999999999887  9999999999999999999999854

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=2.3e-08  Score=69.96  Aligned_cols=58  Identities=19%  Similarity=0.273  Sum_probs=48.5

Q ss_pred             eEecCCccc-cccCC--CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           81 KWGCPPSKF-PWTFT--ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        81 iWe~~pg~f-~~h~~--~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ...-.||.. ++|++  .+|++||++|+++++.+|+  .+.++|||++++|+|..|.++....
T Consensus        43 ~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~~~~--~~~l~~Gd~~~ip~g~~H~~~N~g~  103 (115)
T d1o4ta_          43 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK--DVPIKAGDVCFTDSGESHSIENTGN  103 (115)
T ss_dssp             EEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE--EEEEETTEEEEECTTCEEEEECCSS
T ss_pred             EEEECCCCCcCCEECCCCcEEEEEEECcceEEEcCe--eEEeeccEEEEECCCCeEEEEECCC
Confidence            345567764 45653  5899999999999999887  8999999999999999999997744

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=5.8e-08  Score=78.49  Aligned_cols=70  Identities=21%  Similarity=0.330  Sum_probs=55.3

Q ss_pred             CCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           75 GVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        75 Gv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      |.......+..||..   |+|...+|++||++|++++.++|+  .+.+++||++++|+|..|.|++...-.+.+.
T Consensus       212 ~~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v~~~--~~~~~~Gd~~~vP~g~~H~~~~~~~~~~~l~  284 (330)
T d1y3ta1         212 GQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQ--EIQLNPGDFLHVPANTVHSYRLDSHYTKMVG  284 (330)
T ss_dssp             TSCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEETTE--EEEECTTCEEEECTTCCEEEEECSSSEEEEE
T ss_pred             CcEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEECCE--EEEeCCCCEEEECcCCcEEeEeCCCCeEEEE
Confidence            334455677777764   344457899999999999999887  8999999999999999999998765444443

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.64  E-value=3.8e-08  Score=79.59  Aligned_cols=64  Identities=16%  Similarity=0.231  Sum_probs=53.4

Q ss_pred             CCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           75 GVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        75 Gv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      |..+...+...||..   ++|...+|++||++|++++..+|+  ++.+++||++++|+|..|.|+....
T Consensus        40 ~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~--~~~l~~Gd~~~~p~~~~H~~~n~~~  106 (330)
T d1y3ta1          40 DLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGE--RYLLISGDYANIPAGTPHSYRMQSH  106 (330)
T ss_dssp             SSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTE--EEEECTTCEEEECTTCCEEEEECST
T ss_pred             CcEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEECCE--EEEEcCCCEEEeCCCCeEEEEEcCC
Confidence            444556677778875   344457899999999999999877  8999999999999999999998865

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=98.60  E-value=1.2e-07  Score=71.80  Aligned_cols=70  Identities=17%  Similarity=0.290  Sum_probs=57.8

Q ss_pred             hhhhcCCceeeeEecCCccc--cccCCCceEEEEEEeEEEEEE--CCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           70 KLSELGVTSWPKWGCPPSKF--PWTFTATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        70 ~L~~lGv~~~giWe~~pg~f--~~h~~~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      .|..++..+...-+.+|+.+  +.|.+.+|++||++|+++++.  .++.+++.+++||++++|+|..+.|....
T Consensus        34 ~l~~l~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~h~~~N~~  107 (178)
T d1dgwa_          34 KLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPD  107 (178)
T ss_dssp             GGGGGTTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECC
T ss_pred             hccCccceEEEEEEecCCcccccccCCCCEEEEEEEeEEEEEEecCCceEEEEecCCCEEEECCCCeEEEEECC
Confidence            46667777778888999997  455679999999999988877  45546788999999999999999988753

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.56  E-value=1e-07  Score=67.96  Aligned_cols=46  Identities=13%  Similarity=0.244  Sum_probs=40.5

Q ss_pred             CCCceEEEEEEeEEEEEECCc--ceEEEEcCCcEEEEcCCcEEEEEEc
Q 031987           93 FTATETMYLLEGKVIVYVDGR--EGSFEIGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        93 ~~~dE~~yVLEG~v~vt~dgg--~~~~~i~aGD~v~~PkG~~~tW~v~  138 (149)
                      ...+|++|||+|++++...++  ++++.++|||+++||++..|.|...
T Consensus        62 H~~eE~~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~~pH~~~n~  109 (122)
T d2bnma2          62 HAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAA  109 (122)
T ss_dssp             CSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEES
T ss_pred             cccEEEEEEEEEEEEEEEecccCCEEEEEccCcEEEeCCCCCEEEEcC
Confidence            457999999999999998532  2689999999999999999999985

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.56  E-value=7.5e-08  Score=78.93  Aligned_cols=63  Identities=24%  Similarity=0.507  Sum_probs=52.7

Q ss_pred             cCCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           84 CPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        84 ~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      ..|+..   +||.+.+|++|||||++++++.++ +...+++||++++|+|..+.+......-+++.+
T Consensus       256 ~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~~~-~~~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~~  321 (348)
T d1juha_         256 TTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDY-AATELGSGDVAFIPGGVEFKYYSEAYFSKVLFV  321 (348)
T ss_dssp             CCCTTSCCCCBCCSSCEEEEEEESCEEEEETTS-CCEEECTTCEEEECTTCCEEEEESSSSEEEEEE
T ss_pred             ecCCCCCCCcccCCCCEEEEEEeceEEEEeCCc-ceEEecCCCEEEECCCCcEEEEeCCCCcEEEEE
Confidence            345543   467789999999999999999776 578999999999999999999999876666544

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.54  E-value=1.8e-07  Score=76.55  Aligned_cols=54  Identities=13%  Similarity=0.267  Sum_probs=45.3

Q ss_pred             cccCCCceEEEEEEeEEEEEECC---cceEEEEcCCcEEEEcCCcEEEEEEcCceEE
Q 031987           90 PWTFTATETMYLLEGKVIVYVDG---REGSFEIGTGDLVVFPKGMKITWDVIEAVNK  143 (149)
Q Consensus        90 ~~h~~~dE~~yVLEG~v~vt~dg---g~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK  143 (149)
                      |+|...+|++||++|+++++.+|   +++.+.+++||++++|+|..|.++..+.--+
T Consensus        64 H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H~~~n~~~~~~  120 (348)
T d1juha_          64 HIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTE  120 (348)
T ss_dssp             EECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTEE
T ss_pred             cccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeEeeEeCCCCcE
Confidence            46667899999999999998753   2367899999999999999999999876333

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.52  E-value=2.9e-07  Score=71.25  Aligned_cols=71  Identities=18%  Similarity=0.315  Sum_probs=57.4

Q ss_pred             hhhhcCCceeeeEecCCccc--cccCCCceEEEEEEeEEEEEE--CCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           70 KLSELGVTSWPKWGCPPSKF--PWTFTATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        70 ~L~~lGv~~~giWe~~pg~f--~~h~~~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .+..++......-+..|+.+  +.|.+.+|++||++|++.++.  +|+..++.+++||+++||+|+.+.|.....
T Consensus        33 ~l~~l~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~~~~v~~~~~~~~~l~~GDv~~iP~G~~~~~~N~~~  107 (203)
T d1uika1          33 QLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDN  107 (203)
T ss_dssp             GGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCS
T ss_pred             hhccccceEEEEEEecCCCccccccCCCcEEEEEEEEEEEEEEEeCCCeEEEEecCCCEEEECCCCeEEEEECCC
Confidence            45666666677788899987  345689999999999998876  444467889999999999999999988654

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.7e-07  Score=73.69  Aligned_cols=69  Identities=13%  Similarity=0.092  Sum_probs=54.1

Q ss_pred             ceeeeEecCCccc-c--ccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE-EEEEe
Q 031987           77 TSWPKWGCPPSKF-P--WTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN-KHYSL  147 (149)
Q Consensus        77 ~~~giWe~~pg~f-~--~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr-K~Yvi  147 (149)
                      ....+.+.+||.. +  .+...+|++|||+|+++++++|+  .+.+++||+++||+|..|.+...++-. ..|.+
T Consensus       171 ~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~g~~~i~~~--~~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~~~  243 (253)
T d1rc6a_         171 MNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNN--WIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIY  243 (253)
T ss_dssp             EEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSC--EEEEETTCEEEECSSEEEEEEEC----CEEEEE
T ss_pred             EEEEEEEECCCceEeEEEeCCceEEEEEeCCEEEEEECCE--EEEecCCCEEEECCCCCEeeeeCCCCCcEEEEE
Confidence            3456788889864 3  23568999999999999999888  899999999999999999999987643 34543

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=98.47  E-value=3.9e-07  Score=68.41  Aligned_cols=70  Identities=19%  Similarity=0.312  Sum_probs=56.2

Q ss_pred             hhhcCCceeeeEecCCccc--cccCCCceEEEEEEeEEEEEE--CCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           71 LSELGVTSWPKWGCPPSKF--PWTFTATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        71 L~~lGv~~~giWe~~pg~f--~~h~~~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      |..++..+...-+.+|+.+  +.|.+.+|++||++|+++++.  .++.+++.+++||++++|+|+.+.+.....
T Consensus        38 l~~l~~~~v~~~~i~p~~~~~Ph~~~a~ei~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~vP~G~~h~~~n~~~  111 (170)
T d1uija1          38 LENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHD  111 (170)
T ss_dssp             GGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCS
T ss_pred             hcchhheEEEEEEecCCcccccccCCCCEEEEEEEEEEEEEEEeCCCcEEEEecCCcEEEECCCCeEEEEEcCC
Confidence            5556656667778899986  445679999999999999876  344367889999999999999998887643

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.46  E-value=5.1e-07  Score=66.71  Aligned_cols=68  Identities=12%  Similarity=0.013  Sum_probs=52.6

Q ss_pred             eeeEecCCccc-ccc-CCCceEEEEEEeEEEEEECCcc-------eEEEEcCCcEEEEcCCcEEEEEEc---CceEEEEE
Q 031987           79 WPKWGCPPSKF-PWT-FTATETMYLLEGKVIVYVDGRE-------GSFEIGTGDLVVFPKGMKITWDVI---EAVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f-~~h-~~~dE~~yVLEG~v~vt~dgg~-------~~~~i~aGD~v~~PkG~~~tW~v~---e~vrK~Yv  146 (149)
                      .......||.. +.| ...+|++|||+|++.++.+|.+       +.+.++|||++++|+|..|.+.+.   |+++-..+
T Consensus        43 v~~~~l~PG~~~~~H~H~~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l~~l~i  122 (160)
T d1lr5a_          43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVI  122 (160)
T ss_dssp             EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEE
T ss_pred             EEEEEECCCccccceeccccEEEEEEeeeEEEEECCccccccccceEEEecCCCEEEeCCCCcEEEEECCCCCCEEEEEE
Confidence            44556678875 333 3579999999999999998731       578999999999999999999975   35554433

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.44  E-value=1.8e-07  Score=73.51  Aligned_cols=60  Identities=13%  Similarity=0.119  Sum_probs=48.6

Q ss_pred             eeeEecCCccc---ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           79 WPKWGCPPSKF---PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        79 ~giWe~~pg~f---~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ....+..||.-   +.| ...+|++|||+|+++++.+|.  .+.+++||+++||+|..|+|.....
T Consensus        50 ~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~~~~--~~~l~~Gd~~~~p~~~~H~~~N~~~  113 (250)
T d1sefa_          50 DYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQE--THELEAGGYAYFTPEMKMYLANAQE  113 (250)
T ss_dssp             EEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSC--EEEEETTEEEEECTTSCCEEEESSS
T ss_pred             EEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEECCE--EEEEcCCCEEEEcCCCcEEEEECCC
Confidence            44566666653   233 456889999999999999887  8999999999999999999997753

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=4e-07  Score=66.38  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=48.2

Q ss_pred             eeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           80 PKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        80 giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      +.-.-+||.. .||. +.+|++|||+|++.+..+|+ +.+.+++||++++|+|..|.-.....
T Consensus        38 ~~vtf~PG~~~~~H~H~~~q~~~Vl~G~~~~~~~g~-~~~~~~~Gd~v~ippg~~H~~~a~~~   99 (134)
T d2f4pa1          38 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGK-PARILKKGDVVEIPPNVVHWHGAAPD   99 (134)
T ss_dssp             EEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTS-CCEEEETTCEEEECTTCCEEEEEBTT
T ss_pred             EEEEECCCCcCccccCCCCEEEEEEeCEEEEEECCc-ceEEEcCCCeEEECCCCceECccCCC
Confidence            4445577765 5664 47899999999999999888 67899999999999999996554443

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.42  E-value=6.7e-07  Score=71.73  Aligned_cols=65  Identities=15%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             eeeEecCCccc---ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC--ceEEEE
Q 031987           79 WPKWGCPPSKF---PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE--AVNKHY  145 (149)
Q Consensus        79 ~giWe~~pg~f---~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e--~vrK~Y  145 (149)
                      -.+-+..||.-   +.+ ...+|++|||+|+++++.+|.  .+.+++||.+++|+|..|+++...  +.+-++
T Consensus        68 ~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~~g~--~~~L~~Gd~~y~P~g~~h~~~N~g~~~a~~l~  138 (273)
T d1sq4a_          68 QYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQ--VHAMQPGGYAFIPPGADYKVRNTTGQHTRFHW  138 (273)
T ss_dssp             EEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSC--EEEECTTEEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             EEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEECCE--EEEecCCCEEEECCCCcEeeeecCCCCEEEEE
Confidence            44555556642   343 346899999999999999887  899999999999999999999753  454433

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.41  E-value=5.3e-07  Score=70.82  Aligned_cols=65  Identities=18%  Similarity=0.127  Sum_probs=52.5

Q ss_pred             eeeEecCCccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEE
Q 031987           79 WPKWGCPPSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHY  145 (149)
Q Consensus        79 ~giWe~~pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Y  145 (149)
                      -.+++..||.-.-+...+|++|||+|+++++.+|+  .+.+++||.+++|+|..++++..+.-.-.+
T Consensus        52 ~~~v~~~pGg~~~~~~~E~~~~Vl~G~~~~~~~g~--~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~  116 (245)
T d1sfna_          52 QFTAEMPAGAQATESVYQRFAFVLSGEVDVAVGGE--TRTLREYDYVYLPAGEKHMLTAKTDARVSV  116 (245)
T ss_dssp             EEEEEECTTCEEECCSSEEEEEEEEEEEEEECSSC--EEEECTTEEEEECTTCCCEEEEEEEEEEEE
T ss_pred             EEEEEECCCCCCCCCCccEEEEEEECEEEEEECCE--EEEecCCCEEEeCCCCcEEEEeCCCccEEE
Confidence            44566666654434567999999999999999877  899999999999999999999887644333

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.35  E-value=9.4e-07  Score=69.33  Aligned_cols=68  Identities=12%  Similarity=0.225  Sum_probs=55.5

Q ss_pred             ceeeeEecCCccc-ccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           77 TSWPKWGCPPSKF-PWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        77 ~~~giWe~~pg~f-~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      ....+-+.+||.. ++|  ...+|++|||+|++.+.++|+  .+.+++||++++|+|..|.+.....-.-.|.
T Consensus       165 ~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i~~~--~~~v~~GD~i~~~~~~~H~~~n~g~~~~~~l  235 (245)
T d1sfna_         165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEEN--YYPVTAGDIIWMGAHCPQWYGALGRNWSKYL  235 (245)
T ss_dssp             EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTE--EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             eEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEECCE--EEEecCCCEEEECCCCCEeeEeCCCCCEEEE
Confidence            3345667788875 443  467899999999999999887  8999999999999999999999866544454

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.34  E-value=2.3e-06  Score=64.26  Aligned_cols=69  Identities=19%  Similarity=0.318  Sum_probs=51.2

Q ss_pred             hhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEEC--CcceEE--EEcCCcEEEEcCCcEEEEEEcCc
Q 031987           71 LSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVD--GREGSF--EIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        71 L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~d--gg~~~~--~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      |..+|.. ...-..+|+.+   |||.+.+|+.||++|+++++.-  ++.+.+  ++++||+++||+|+.+.....+.
T Consensus        37 L~~~~~s-~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~vvP~G~~h~~~n~~~  112 (174)
T d1fxza2          37 LSWLRLS-AEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSD  112 (174)
T ss_dssp             GTTTTCC-EEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECST
T ss_pred             hhhcCce-EEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEEEECCCCEEEEEeCCC
Confidence            4444432 33455678886   5778899999999999999963  232434  49999999999999988877654

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.34  E-value=1e-06  Score=69.06  Aligned_cols=61  Identities=13%  Similarity=0.236  Sum_probs=52.0

Q ss_pred             ceeeeEecCCccc-cc--cCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           77 TSWPKWGCPPSKF-PW--TFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        77 ~~~giWe~~pg~f-~~--h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      ....+-+-.||.. ++  +...+|++|||+|++.++.+|+  .+.+++||+++||+|..|......
T Consensus       168 ~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~~~~--~~~~~~GD~i~~~~~~pH~~~n~G  231 (250)
T d1sefa_         168 MNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNE--WYPVEKGDYIFMSAYVPQAAYAVG  231 (250)
T ss_dssp             EEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTE--EEEEETTCEEEECTTCCEEEEEEC
T ss_pred             EEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEECCE--EEEecCCCEEEECCCCCEEeEcCC
Confidence            3456677788876 33  3467999999999999999888  899999999999999999999865

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.31  E-value=2.4e-06  Score=71.35  Aligned_cols=71  Identities=20%  Similarity=0.213  Sum_probs=55.2

Q ss_pred             ceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECC---cceEEEEcCCcEEEEcCCcEEEEEEc--CceEEEEEe
Q 031987           77 TSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG---REGSFEIGTGDLVVFPKGMKITWDVI--EAVNKHYSL  147 (149)
Q Consensus        77 ~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg---g~~~~~i~aGD~v~~PkG~~~tW~v~--e~vrK~Yvi  147 (149)
                      .+...-+..||..   |||-..+|++||++|++++++.+   ...++++++||+++||+|..|..+..  ++++-..++
T Consensus       250 is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~vf  328 (372)
T d1j58a_         250 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIF  328 (372)
T ss_dssp             CEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEE
T ss_pred             eeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEcCCCceEEEEecCCcEEEECCCCeEEEEECCCCCEEEEEEE
Confidence            4567788889986   46666899999999999987743   22357899999999999999999875  456555554

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.27  E-value=2.9e-06  Score=63.82  Aligned_cols=68  Identities=24%  Similarity=0.347  Sum_probs=50.1

Q ss_pred             hhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEEC--CcceEE--EEcCCcEEEEcCCcEEEEEEcC
Q 031987           71 LSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVD--GREGSF--EIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        71 L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~d--gg~~~~--~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      |..+|.. ...-...||.+   |||.+.+|++||++|+++++.-  ++.+.+  ++++||+++||+|..+.....+
T Consensus        42 L~~lgls-~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv~~iP~G~~h~~~n~~  116 (173)
T d1od5a2          42 LRQFGLS-AQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGE  116 (173)
T ss_dssp             HHHHTCE-EEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEE
T ss_pred             hhhccce-EEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCcEEEECCCCEEEEEcCC
Confidence            4444542 45567788886   5778899999999999999863  332333  5999999999999998655443

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.26  E-value=4.6e-06  Score=63.44  Aligned_cols=70  Identities=14%  Similarity=0.056  Sum_probs=51.6

Q ss_pred             eeeeEecCCccc---------ccc--CCCceEEEEEEeEEEEEECCc---ceEEEEcCCcEEEEcCCcEEEEEEcC--ce
Q 031987           78 SWPKWGCPPSKF---------PWT--FTATETMYLLEGKVIVYVDGR---EGSFEIGTGDLVVFPKGMKITWDVIE--AV  141 (149)
Q Consensus        78 ~~giWe~~pg~f---------~~h--~~~dE~~yVLEG~v~vt~dgg---~~~~~i~aGD~v~~PkG~~~tW~v~e--~v  141 (149)
                      ..++-...||+.         |+|  .+.+|++|||+|++.+..++.   ...+.+++||++++|+|+.|......  ++
T Consensus        68 ~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~Gde~L  147 (190)
T d1x82a_          68 NFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPF  147 (190)
T ss_dssp             EEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSSCE
T ss_pred             EEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECCCCCE
Confidence            356666667751         344  346899999999999988542   14578999999999999999998764  45


Q ss_pred             EEEEEe
Q 031987          142 NKHYSL  147 (149)
Q Consensus       142 rK~Yvi  147 (149)
                      .-.+++
T Consensus       148 ~~l~v~  153 (190)
T d1x82a_         148 IFLAIY  153 (190)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555544

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=1.4e-06  Score=68.27  Aligned_cols=61  Identities=15%  Similarity=0.220  Sum_probs=49.5

Q ss_pred             eeeeEecCCccc---ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           78 SWPKWGCPPSKF---PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        78 ~~giWe~~pg~f---~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ....++..||.-   +.| ...+|++|||+|+++++.+|+  .+.+++||++++|+|..|.|.....
T Consensus        52 ~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~~~~--~~~l~~Gd~~~~p~~~~H~~~N~~~  116 (253)
T d1rc6a_          52 VDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGK--TFALSEGGYLYCPPGSLMTFVNAQA  116 (253)
T ss_dssp             EEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTE--EEEEETTEEEEECTTCCCEEEECSS
T ss_pred             EEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEECCE--EEEECCCCEEEECCCCCEEEEECCC
Confidence            345566666642   233 346889999999999999887  8999999999999999999997754

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.21  E-value=3.8e-06  Score=64.77  Aligned_cols=71  Identities=21%  Similarity=0.256  Sum_probs=52.8

Q ss_pred             hhhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECC----cce--EEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           70 KLSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG----REG--SFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        70 ~L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg----g~~--~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      -|..+|.. ...-+.+||..   |||-..+|++||++|++++...+    ++.  ..++++||+++||+|..|-+.....
T Consensus        66 ~Ln~lglS-~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~  144 (201)
T d2et1a1          66 GTNTLGVS-MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGK  144 (201)
T ss_dssp             GGTTSSCE-EEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSS
T ss_pred             ccccccee-EEEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCC
Confidence            35556654 34556678875   45556899999999999998732    112  3579999999999999999998755


Q ss_pred             e
Q 031987          141 V  141 (149)
Q Consensus       141 v  141 (149)
                      -
T Consensus       145 ~  145 (201)
T d2et1a1         145 T  145 (201)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.11  E-value=2.4e-06  Score=68.39  Aligned_cols=66  Identities=17%  Similarity=0.150  Sum_probs=53.2

Q ss_pred             eeeEecCCccc-c-ccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEE
Q 031987           79 WPKWGCPPSKF-P-WTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYS  146 (149)
Q Consensus        79 ~giWe~~pg~f-~-~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yv  146 (149)
                      ..+-..+||.. + .|. ..+|++|||||++++.++|.  .+.+++||++++|+|..|.|....+-.-.|.
T Consensus       191 ~~i~~~~PG~~~~~~h~H~~ee~~~vl~G~~~~~~~~~--~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl  259 (273)
T d1sq4a_         191 VNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQD--WVEVEAGDFMWLRAFCPQACYSGGPGRFRYL  259 (273)
T ss_dssp             EEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTE--EEEEETTCEEEEEESCCEEEECCSSSCEEEE
T ss_pred             EEEEEEccCCccccccccccceEEEEEccEEEEEECCE--EEEecCCCEEEECCCCCEEeEeCCCCCEEEE
Confidence            44566678763 3 343 36899999999999999887  8999999999999999999999866444454

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.10  E-value=6.7e-06  Score=62.04  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=56.4

Q ss_pred             hhhcCCceeeeEecCCccc---cccCCCceEEEEEEeEEEEEECC--c---------------ceEEEEcCCcEEEEcCC
Q 031987           71 LSELGVTSWPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDG--R---------------EGSFEIGTGDLVVFPKG  130 (149)
Q Consensus        71 L~~lGv~~~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dg--g---------------~~~~~i~aGD~v~~PkG  130 (149)
                      |..+|+. ...-..+|+.+   +||.+.+|++||++|++.+..-+  +               .-...+++||+++||+|
T Consensus        37 L~~~~v~-~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G  115 (185)
T d1uika2          37 LRDLDVF-LSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAG  115 (185)
T ss_dssp             HHHHTEE-EEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC------------CBCCEEEEEEECTTCEEEECTT
T ss_pred             hhhcCch-hheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCccchhhccccccCcceeEEEEecCCcEEEECCC
Confidence            5555532 45567788887   46778999999999998877632  1               02457999999999999


Q ss_pred             cEEEEEEcCceEEEEE
Q 031987          131 MKITWDVIEAVNKHYS  146 (149)
Q Consensus       131 ~~~tW~v~e~vrK~Yv  146 (149)
                      ..+.+...+.....++
T Consensus       116 ~~~~~~n~~d~~~v~~  131 (185)
T d1uika2         116 YPVVVNATSDLNFFAF  131 (185)
T ss_dssp             CCEEEEESSSEEEEEE
T ss_pred             CEEEEEcCCCccEEEE
Confidence            9999998888766554

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.06  E-value=6.1e-06  Score=61.38  Aligned_cols=67  Identities=15%  Similarity=0.126  Sum_probs=51.7

Q ss_pred             eeeEecCCccc---cccCCCceEEEEEEeEEEEEEC--Ccce--------EEEEcCCcEEEEcCCcEEEEEEcCceEEEE
Q 031987           79 WPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVD--GREG--------SFEIGTGDLVVFPKGMKITWDVIEAVNKHY  145 (149)
Q Consensus        79 ~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~d--gg~~--------~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Y  145 (149)
                      ...-+.+|+.+   +||...+|++||++|+++++.-  ++..        ...+++||+++||+|+.+-....+...+..
T Consensus        22 v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~~~~v~  101 (162)
T d2phla2          22 ISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTG  101 (162)
T ss_dssp             EEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSSEEEEE
T ss_pred             EEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCCCceEEE
Confidence            34567788887   4677899999999999988763  2211        347999999999999998888877765544

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.05  E-value=8.7e-06  Score=62.40  Aligned_cols=70  Identities=14%  Similarity=0.160  Sum_probs=54.6

Q ss_pred             hhhhcCCceeeeEecCCccc--cccCCCceEEEEEEeEEEEEE--CCcceEE------EEcCCcEEEEcCCcEEEEEEcC
Q 031987           70 KLSELGVTSWPKWGCPPSKF--PWTFTATETMYLLEGKVIVYV--DGREGSF------EIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        70 ~L~~lGv~~~giWe~~pg~f--~~h~~~dE~~yVLEG~v~vt~--dgg~~~~------~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      .|..++......-+..|+.+  |.|.+.++++||++|++.++.  .++.++.      .+++||++++|+|..+-+....
T Consensus        35 ~l~~l~~~~v~~~~i~P~~l~lP~~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~  114 (200)
T d2phla1          35 RLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPD  114 (200)
T ss_dssp             GGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECC
T ss_pred             hhhcccceEEEEEEecCCceeeeecCCCCEEEEEEeeeEEEEEEECCCCceeehhhccCccCCCEEEECCCCeEEEEECC
Confidence            35667767777889999998  445679999999999988865  3542332      4899999999999999888643

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=3.3e-06  Score=67.69  Aligned_cols=63  Identities=13%  Similarity=0.058  Sum_probs=51.2

Q ss_pred             ceeeeEecCCccc-ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           77 TSWPKWGCPPSKF-PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        77 ~~~giWe~~pg~f-~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ..+++-...||.. +.| ...+|++|||+|+.+++..++ +.+.+++||++++|+|..|.....+.
T Consensus        54 l~~~~~~l~PG~~~~~H~H~~~e~~~vl~G~g~~t~~~~-~~~~~~~Gd~~~~P~~~~H~~~n~g~  118 (308)
T d2d40a1          54 LYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDG-ERTPMNEGDFILTPQWRWHDHGNPGD  118 (308)
T ss_dssp             CEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETT-EEEECCTTCEEEECTTSCEEEECCSS
T ss_pred             ceeeeEEECCCCccccccCchhheEEEEEeeEEEEEecC-EEEEecCCCEEEeCCCceEEeEECCC
Confidence            4467888889975 333 257899999999999876455 58999999999999999999987754

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.9e-05  Score=62.00  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=50.3

Q ss_pred             eeeEecCCccc---cccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987           79 WPKWGCPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN  142 (149)
Q Consensus        79 ~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr  142 (149)
                      ...-...||..   ++| ..+|++||++|+.+++++|.  ++.+++||++++|+|..|..+..+...
T Consensus       224 ~~~~~l~pG~~~~~h~h-~~~~~~~v~~G~g~~~v~~~--~~~~~~GD~~~vP~~~~h~~~~~~d~~  287 (308)
T d2d40a1         224 AFLQLLPKGFASRVART-TDSTIYHVVEGSGQVIIGNE--TFSFSAKDIFVVPTWHGVSFQTTQDSV  287 (308)
T ss_dssp             EEEEEECTTCBCCCBEE-SSCEEEEEEEEEEEEEETTE--EEEEETTCEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEccCCCccCCccC-ChheEEEEEeCcEEEEECCE--EEEEeCCCEEEeCCCCeEEEEcCCCeE
Confidence            33455667765   344 57899999999999999887  899999999999999999999887643

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.5e-05  Score=56.95  Aligned_cols=52  Identities=19%  Similarity=0.332  Sum_probs=45.2

Q ss_pred             CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc---CceEEEEE
Q 031987           93 FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI---EAVNKHYS  146 (149)
Q Consensus        93 ~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~---e~vrK~Yv  146 (149)
                      .+.-++.||++|+..+..+++  .+.++|||++++|+|..|+|...   ++.+..|+
T Consensus        36 ~~~Y~l~yv~~G~G~~~i~~~--~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl   90 (161)
T d2arca_          36 MKGYILNLTIRGQGVVKNQGR--EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWV   90 (161)
T ss_dssp             CSSEEEEEEEEECEEEEETTE--EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEE
T ss_pred             CCCEEEEEEEEeEEEEEECCE--EEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEE
Confidence            468899999999999999998  99999999999999999998765   34565554

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.91  E-value=2.1e-05  Score=65.40  Aligned_cols=65  Identities=22%  Similarity=0.382  Sum_probs=47.8

Q ss_pred             eeeEecCCccc---cccCCCceEEEEEEeEEEEEE--CCcce-EEEEcCCcEEEEcCCcEEEEEEcCceEEE
Q 031987           79 WPKWGCPPSKF---PWTFTATETMYLLEGKVIVYV--DGREG-SFEIGTGDLVVFPKGMKITWDVIEAVNKH  144 (149)
Q Consensus        79 ~giWe~~pg~f---~~h~~~dE~~yVLEG~v~vt~--dgg~~-~~~i~aGD~v~~PkG~~~tW~v~e~vrK~  144 (149)
                      .-.-+..||.+   |||. ..|+.||++|+++++.  .+|.. ...+++||+++||+|+.|.....+.-.++
T Consensus        74 ~~~~~L~pga~~~pH~H~-~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~H~i~n~~dg~e~  144 (372)
T d1j58a_          74 SVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF  144 (372)
T ss_dssp             EEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEE
T ss_pred             heEEEECCCcCcCCcccC-cccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEECCCCEEEEEeCCCCcEE
Confidence            34477889987   4554 5699999999999986  23312 33599999999999999977765443333

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=97.72  E-value=9.8e-05  Score=60.81  Aligned_cols=57  Identities=14%  Similarity=0.113  Sum_probs=46.2

Q ss_pred             EecCCcccc-cc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           82 WGCPPSKFP-WT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        82 We~~pg~f~-~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      =...||... .| ...+|++||++|+.+++++|.  ++.+++||++++|.|..|.+.....
T Consensus       261 ~~l~pG~~~~~hrH~~~~v~~v~~G~g~~~i~g~--~~~~~~GDv~~vP~~~~h~~~N~s~  319 (355)
T d3bu7a1         261 QMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGK--RFDWSEHDIFCVPAWTWHEHCNTQE  319 (355)
T ss_dssp             EEECTTCBCCCEEESSCEEEEEEECCEEEEETTE--EEEECTTCEEEECTTCCEEEEECCS
T ss_pred             EEECCCCccCCcCccCcEEEEEEECcEEEEECCE--EEEeeCCCEEEeCCCCcEEeecCCC
Confidence            345566542 22 246789999999999999887  8999999999999999999987653

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.65  E-value=4.3e-06  Score=64.05  Aligned_cols=66  Identities=17%  Similarity=0.241  Sum_probs=49.3

Q ss_pred             CCceeeeEecCCcc---------c-ccc-CCCceEEEEEEeEEEEEECCcce--EEEEcCCcEEEEcCCcEEEEEEcCc
Q 031987           75 GVTSWPKWGCPPSK---------F-PWT-FTATETMYLLEGKVIVYVDGREG--SFEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus        75 Gv~~~giWe~~pg~---------f-~~h-~~~dE~~yVLEG~v~vt~dgg~~--~~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      |...+-+-...|..         | ..| .+.||+.||++|+..+...++++  .+.+++||++.+|+|+.|.++..+.
T Consensus        69 Gy~~~D~i~l~p~~p~~~~~~~kF~~EH~H~~dEvr~vv~G~g~f~v~~~d~~~~v~~~~GDli~vPag~~H~F~~~~~  147 (179)
T d1zrra1          69 GYQSWDVISLRADNPQKEALREKFLNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSE  147 (179)
T ss_dssp             CCSEEEEECCCTTCTHHHHHHHHHHSCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSC
T ss_pred             CCceEEEEEeCCCCCCHHHHHHHhcccccCCCceEEEEEeCeEEEEEEcCCeEEEEEEcCCCEEEeCCCCeEccccCCC
Confidence            76666666666543         2 244 35899999999999876654423  3578999999999999999987644

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=3.1e-05  Score=59.16  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=50.5

Q ss_pred             cCCceeeeEecCCccc-----------cccC-CCceEEEEEEeEEEEEECCcc-e--EEEEcCCcEEEEcCCcEEEEEEc
Q 031987           74 LGVTSWPKWGCPPSKF-----------PWTF-TATETMYLLEGKVIVYVDGRE-G--SFEIGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        74 lGv~~~giWe~~pg~f-----------~~h~-~~dE~~yVLEG~v~vt~dgg~-~--~~~i~aGD~v~~PkG~~~tW~v~  138 (149)
                      -|....-+-...|..+           ..|. ..+|+.||++|+..+.+.+++ .  .+.+++||++.+|+|+.|.+...
T Consensus        59 rgY~~~D~i~l~p~~~pn~~~~~~~F~~EH~H~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~  138 (179)
T d1vr3a1          59 RNYSWMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLD  138 (179)
T ss_dssp             HTCCEEEEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEC
T ss_pred             cCCCceEEEEECCccCCCHHHHHHHHhhceeCCCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCC
Confidence            3666666666655542           2453 589999999999999986541 2  25678999999999999999988


Q ss_pred             Cc
Q 031987          139 EA  140 (149)
Q Consensus       139 e~  140 (149)
                      +.
T Consensus       139 ~~  140 (179)
T d1vr3a1         139 EK  140 (179)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=97.60  E-value=0.00011  Score=60.00  Aligned_cols=80  Identities=14%  Similarity=-0.026  Sum_probs=57.7

Q ss_pred             EEEeeCCChhhh-hhcCCceeeeEecCCccc-ccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEE
Q 031987           60 VKIEKNPPQSKL-SELGVTSWPKWGCPPSKF-PWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWD  136 (149)
Q Consensus        60 V~i~~~ps~~~L-~~lGv~~~giWe~~pg~f-~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~  136 (149)
                      +.+-.||....- .-......++....||.. +.| ....|+.|||+|+..++.-|| +.+.+++||++++|.|..|...
T Consensus        69 ~~~l~np~~~~~~~~t~~l~~~~~~l~PGe~~~~H~H~~~~~~~vi~G~g~~t~v~g-~~~~~~~GD~~~~P~~~~H~~~  147 (351)
T d2phda1          69 ALGLANPGLGGNAYISPTMWAGIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNG-DPVRMSRGDLLLTPGWCFHGHM  147 (351)
T ss_dssp             EEEECCTTSTTCCCSSSSCEEEEEEECTTCEEEEEEESSCEEEEEEECEEEEEEETT-EEEEEETTCEEEECTTCCEEEE
T ss_pred             EEEeecCCCCCccccCchhhhheEEECCCCcCCccccccceeEEEEECCcEEEEECC-EEEEEeCCCEEEeCCCceEEEE
Confidence            344455543221 222334457888889987 344 358999999999998776555 5899999999999999999998


Q ss_pred             EcCc
Q 031987          137 VIEA  140 (149)
Q Consensus       137 v~e~  140 (149)
                      ....
T Consensus       148 n~~d  151 (351)
T d2phda1         148 NDTD  151 (351)
T ss_dssp             ECSS
T ss_pred             EcCC
Confidence            7643

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=97.58  E-value=0.00012  Score=59.83  Aligned_cols=46  Identities=17%  Similarity=0.338  Sum_probs=42.5

Q ss_pred             CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCce
Q 031987           94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAV  141 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~v  141 (149)
                      ...|++||++|+.+++++|.  ++.+++||++++|.+..++.+..+..
T Consensus       282 ~~~~v~~vi~G~g~~~i~~~--~~~~~~gDvf~vP~~~~h~~~n~~~~  327 (351)
T d2phda1         282 VGSTVFQVFEGAGAVVMNGE--TTKLEKGDMFVVPSWVPWSLQAETQF  327 (351)
T ss_dssp             SSCEEEEEEESCEEEEETTE--EEEECTTCEEEECTTCCEEEEESSCE
T ss_pred             cCcEEEEEEeCcEEEEECCE--EEEEcCCCEEEeCCCCcEEEecCCCe
Confidence            57899999999999999887  89999999999999999999988764

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.56  E-value=0.00012  Score=50.63  Aligned_cols=57  Identities=18%  Similarity=0.278  Sum_probs=51.6

Q ss_pred             CccccccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceE
Q 031987           86 PSKFPWTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVN  142 (149)
Q Consensus        86 pg~f~~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vr  142 (149)
                      ||.+.......|+|-|++|++++...|..+-.++++|+.+-+|++..-.-++.+...
T Consensus        31 pGeY~F~T~~~E~MeivsG~l~V~lpg~~ew~~~~~G~sF~Vpans~F~ikv~~~~~   87 (93)
T d2oyza1          31 PGEYTFGTQAPERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVKDATA   87 (93)
T ss_dssp             SEEEEEEESSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEESSCEE
T ss_pred             ccEEEEcCCCCEEEEEEeeEEEEECCCCcccEEeCCCCeEEECCCCEEEEEECccee
Confidence            888888889999999999999999998756799999999999999999999887754

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=97.22  E-value=0.00019  Score=59.02  Aligned_cols=59  Identities=15%  Similarity=0.164  Sum_probs=46.8

Q ss_pred             eeeEecCCccc-cccC-CCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEc
Q 031987           79 WPKWGCPPSKF-PWTF-TATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus        79 ~giWe~~pg~f-~~h~-~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~  138 (149)
                      .++=...||.. +.|. ...++.|||+|+..++.-|| +...+++||++++|.|..|.....
T Consensus        87 ~~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t~v~g-e~~~~~~GD~~~~P~~~~H~h~n~  147 (355)
T d3bu7a1          87 SGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDG-HKVELGANDFVLTPNGTWHEHGIL  147 (355)
T ss_dssp             EEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETT-EEEEECTTCEEEECTTCCEEEEEC
T ss_pred             hheEeeCCCCcCcccccccceeEEEEECCcEEEEECC-EEEEeeCCCEEEeCCCceEeeecC
Confidence            34445678876 3443 58999999999988765444 489999999999999999998875

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00039  Score=59.22  Aligned_cols=64  Identities=19%  Similarity=0.360  Sum_probs=52.5

Q ss_pred             eEecCCcccc---ccCCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEEEEEe
Q 031987           81 KWGCPPSKFP---WTFTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNKHYSL  147 (149)
Q Consensus        81 iWe~~pg~f~---~h~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~Yvi  147 (149)
                      ++.|..+--.   ..-+.||++|+-+|+.++..+=|  ...+++||.++||+|+..+.+..++.| .|++
T Consensus       134 iy~~n~sM~~~~f~NADGDeLi~~~~Gsg~l~TefG--~L~v~pGDyvVIPRG~~frv~~~~~~r-~yii  200 (439)
T d1eyba_         134 IFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFG--KMLVQPNEICVIQRGMRFSIDVFEETR-GYIL  200 (439)
T ss_dssp             EEEECSCCCSEEEEESSEEEEEEEEESCEEEEETTE--EEEECTTEEEEECTTCCEEEECSSSEE-EEEE
T ss_pred             EEecCCCCccceeEcCCCCEEEEEEeCcEEEEEeee--EEEecCCcEEEecCceEEEEecCCCce-EEEE
Confidence            5666654322   23578999999999999999999  899999999999999988888888874 5655

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=96.71  E-value=0.0083  Score=46.88  Aligned_cols=72  Identities=19%  Similarity=0.278  Sum_probs=54.1

Q ss_pred             hhhhhhcCCceeeeEecCCccc--cccCCCceEEEEEEeEEEEEEC--Cc-----------------------ceEEEEc
Q 031987           68 QSKLSELGVTSWPKWGCPPSKF--PWTFTATETMYLLEGKVIVYVD--GR-----------------------EGSFEIG  120 (149)
Q Consensus        68 ~~~L~~lGv~~~giWe~~pg~f--~~h~~~dE~~yVLEG~v~vt~d--gg-----------------------~~~~~i~  120 (149)
                      ...|.-.|+.. ..-..+|+.+  |.+.+.+.++||++|+..+..-  |.                       .....++
T Consensus        31 ~~qlqcagV~~-~r~~I~p~gL~lP~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~~~~~d~~qk~~~lr  109 (239)
T d1fxza1          31 NKPFQCAGVAL-SRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFR  109 (239)
T ss_dssp             SHHHHHHTCEE-EEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEEC
T ss_pred             Chhhhhccchh-heeeeccCceecceecCCCeEEEEEeCEEEEEEecCCChhhhcccccccccccccccchhhhhhhccc
Confidence            34466567653 3345678887  4567899999999999888764  11                       1245899


Q ss_pred             CCcEEEEcCCcEEEEEEcCc
Q 031987          121 TGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus       121 aGD~v~~PkG~~~tW~v~e~  140 (149)
                      .||++.+|+|+.+-|...+.
T Consensus       110 ~GDVi~iPAG~~~w~~N~gn  129 (239)
T d1fxza1         110 EGDLIAVPTGVAWWMYNNED  129 (239)
T ss_dssp             TTEEEEECTTCEEEEEECSS
T ss_pred             cCCEEEecCCceEEEEeCCC
Confidence            99999999999999998765

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=96.58  E-value=0.0029  Score=47.77  Aligned_cols=53  Identities=21%  Similarity=0.385  Sum_probs=40.5

Q ss_pred             EecCCccc-cccC-CCceEEEEEEeEEEEEE--CCcceEEEEcCCcEEEEcCCcEEE
Q 031987           82 WGCPPSKF-PWTF-TATETMYLLEGKVIVYV--DGREGSFEIGTGDLVVFPKGMKIT  134 (149)
Q Consensus        82 We~~pg~f-~~h~-~~dE~~yVLEG~v~vt~--dgg~~~~~i~aGD~v~~PkG~~~t  134 (149)
                      .-.+|... ++|+ ..+|+||=|+|...+.+  +|+-..+.+++||++.+|+++.|.
T Consensus        40 vVGGPN~R~DyH~~~~eE~FyQlkG~m~Lkv~e~g~~~di~I~EGe~fLLP~~vpHS   96 (174)
T d1yfua1          40 VVGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHS   96 (174)
T ss_dssp             EECSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEE
T ss_pred             EecCCcccCccccCcchhheeeeccceEEEEEeCCceEEEEcCCCcEEEeCCCCCCC
Confidence            33444443 5676 47999999999998877  344456789999999999998875

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=96.46  E-value=0.0017  Score=46.54  Aligned_cols=64  Identities=14%  Similarity=0.092  Sum_probs=43.9

Q ss_pred             eEecCCcc-cccc-CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEE-EEEcCceEEE
Q 031987           81 KWGCPPSK-FPWT-FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKIT-WDVIEAVNKH  144 (149)
Q Consensus        81 iWe~~pg~-f~~h-~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~t-W~v~e~vrK~  144 (149)
                      +-+..||. ++.| ....|.+|||+|+..+...+......+.+|+.++.|+|..|+ +...+...-+
T Consensus        47 l~r~~~G~~~p~H~H~~~e~~~VL~G~l~~~~g~~~~g~~~~~g~y~~~Pag~~H~~~~~~e~~~~~  113 (144)
T d2o1qa1          47 IFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRGGKAAGGDTAIAPGYGYESANARHDKTEFPVASEFY  113 (144)
T ss_dssp             EEEECTTEEECCEEESSCEEEEEEEEEEEETTCGGGTSEEEESSEEEEECTTCEESCCEEEEEEEEE
T ss_pred             EEEeCCCcCcCCCccccCEEEEEEEEEEEecCCCcCCCceEeCCceeEcCCCCeEccccCCCCEEEE
Confidence            34455554 3445 347788999999998764332233678899999999999996 6665554433

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=96.33  E-value=0.03  Score=43.72  Aligned_cols=73  Identities=19%  Similarity=0.214  Sum_probs=54.0

Q ss_pred             ChhhhhhcCCceeeeEecCCccc--cccCCCceEEEEEEeEEEEEEC--CcceE--------------------------
Q 031987           67 PQSKLSELGVTSWPKWGCPPSKF--PWTFTATETMYLLEGKVIVYVD--GREGS--------------------------  116 (149)
Q Consensus        67 s~~~L~~lGv~~~giWe~~pg~f--~~h~~~dE~~yVLEG~v~vt~d--gg~~~--------------------------  116 (149)
                      ....|...|+.. ..-...|+.+  |.+.+...++||++|+..+..-  |..++                          
T Consensus        30 ~~~qlqcagV~~-~r~~I~p~gL~lP~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~~~~~~~d~~qk~  108 (245)
T d1od5a1          30 QHPELQCAGVTV-SKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKI  108 (245)
T ss_dssp             TSHHHHHHTCEE-EEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC---------------EEESCE
T ss_pred             CCHHHhhcCcee-EEEEEcCCccccccccCCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccccccccccccceeee
Confidence            344566678753 3345678887  4556899999999999998875  21122                          


Q ss_pred             EEEcCCcEEEEcCCcEEEEEEcCc
Q 031987          117 FEIGTGDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus       117 ~~i~aGD~v~~PkG~~~tW~v~e~  140 (149)
                      ..++.||++.+|+|..+-|.....
T Consensus       109 ~rl~~GDVi~iPAG~~~w~yNdgn  132 (245)
T d1od5a1         109 RHFNEGDVLVIPPGVPYWTYNTGD  132 (245)
T ss_dssp             EEEETTEEEEECTTCCEEEEECSS
T ss_pred             ecccCCCEEEECCCceEEEEeCCC
Confidence            249999999999999999888755

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.0041  Score=46.93  Aligned_cols=50  Identities=18%  Similarity=0.311  Sum_probs=37.9

Q ss_pred             CCccc-cccCC-CceEEEEEEeEEEEEE--CCc----ceEEEEcCCcEEEEcCCcEEE
Q 031987           85 PPSKF-PWTFT-ATETMYLLEGKVIVYV--DGR----EGSFEIGTGDLVVFPKGMKIT  134 (149)
Q Consensus        85 ~pg~f-~~h~~-~dE~~yVLEG~v~vt~--dgg----~~~~~i~aGD~v~~PkG~~~t  134 (149)
                      +|... ++|++ .+|+||=|+|...+.+  +++    -..+.+++||++.+|+++.|.
T Consensus        41 GPN~R~DyH~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHS   98 (175)
T d1zvfa1          41 GPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHS   98 (175)
T ss_dssp             SSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEE
T ss_pred             CCCcccccccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCC
Confidence            34443 57765 7999999999988865  221    126779999999999999875

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.26  E-value=0.0066  Score=48.24  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCc
Q 031987           95 ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGM  131 (149)
Q Consensus        95 ~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~  131 (149)
                      .-.++.+++|+++++.+++  .+.+++||++++|++.
T Consensus       265 ~~~il~vi~G~~~i~~~~~--~~~l~~G~~~~ipa~~  299 (315)
T d1qwra_         265 SFLICSVIEGSGLLKYEDK--TCPLKKGDHFILPAQM  299 (315)
T ss_dssp             SCEEEEEEEEEEEEEETTE--EEEEETTCEEEECTTC
T ss_pred             CcEEEEEEeCeEEEEECCE--EEEEecCcEEEEECCC
Confidence            4578999999999998877  8999999999999986

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=94.85  E-value=0.036  Score=38.81  Aligned_cols=56  Identities=9%  Similarity=-0.099  Sum_probs=42.3

Q ss_pred             cCCccc---cccCCCceEEEEEEeEEEEEECCcceEEE---EcCCcEEEEcCCcEEEEEEcC
Q 031987           84 CPPSKF---PWTFTATETMYLLEGKVIVYVDGREGSFE---IGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        84 ~~pg~f---~~h~~~dE~~yVLEG~v~vt~dgg~~~~~---i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      ..+|..   |.|....++++++.|.+.+..++++....   -..++.+++|+|..+.+...+
T Consensus        39 ~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg~~h~~~~l~  100 (135)
T d2pa7a1          39 TKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFS  100 (135)
T ss_dssp             CCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCC
T ss_pred             CCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCCEeeeEEecC
Confidence            345654   34456899999999999998876532222   378899999999999998754

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=94.54  E-value=0.032  Score=46.25  Aligned_cols=46  Identities=17%  Similarity=0.232  Sum_probs=38.8

Q ss_pred             CCceEEEEEEeEEEEEECCc-ceEEEEcCCcEEEEcCCcEEEEEEcC
Q 031987           94 TATETMYLLEGKVIVYVDGR-EGSFEIGTGDLVVFPKGMKITWDVIE  139 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~dgg-~~~~~i~aGD~v~~PkG~~~tW~v~e  139 (149)
                      +.-+++.+++|++++...++ +....++.||++++|+|...+.+...
T Consensus       378 ~~~~Illv~~G~~~i~~~~~~~~~~~l~~G~~~fIpa~~~~~i~~~~  424 (440)
T d1pmia_         378 NGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTADS  424 (440)
T ss_dssp             SSCEEEEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEECS
T ss_pred             CCcEEEEEEcCEEEEEecCCCccEEEeCCceEEEEcCCceEEEEeec
Confidence            45689999999999998653 24689999999999999998888765

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.10  E-value=0.14  Score=40.14  Aligned_cols=49  Identities=16%  Similarity=0.271  Sum_probs=34.7

Q ss_pred             CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcE-EEEEEc-CceEEEEE
Q 031987           95 ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMK-ITWDVI-EAVNKHYS  146 (149)
Q Consensus        95 ~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~-~tW~v~-e~vrK~Yv  146 (149)
                      .-+++++++|+++++ +++  ..++++||++++|++.. .+.+-. ..+-+.|+
T Consensus       247 ~~~il~~~~G~~~i~-~~~--~~~l~~G~s~~iPA~~~~~~i~g~~~~~l~~yv  297 (299)
T d1zx5a1         247 VMNILYAAEGYFILR-GKE--TADLHRGYSCLVPASTDSFTVESERGKIVRIYL  297 (299)
T ss_dssp             BCEEEEEEESCEEEE-SSS--EEEECTTCEEEECTTCCEEEEEEEEEEEEEEEE
T ss_pred             ceEEEEEeccEEEEe-CCC--EEEEcCCcEEEEecCCccEEEEcCcEEEEEEEE
Confidence            457899999999885 334  78999999999999864 344332 23444443

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=92.01  E-value=0.32  Score=36.34  Aligned_cols=60  Identities=13%  Similarity=0.258  Sum_probs=42.2

Q ss_pred             eEecCCcc-ccccCC-CceEEEEEEeEEEEEECC-------------------------------------cceEEEEcC
Q 031987           81 KWGCPPSK-FPWTFT-ATETMYLLEGKVIVYVDG-------------------------------------REGSFEIGT  121 (149)
Q Consensus        81 iWe~~pg~-f~~h~~-~dE~~yVLEG~v~vt~dg-------------------------------------g~~~~~i~a  121 (149)
                      .|-...|. +..|++ ++=++..++|+=+..+-.                                     .....+++|
T Consensus       126 ~~~~~~g~~~~~H~D~~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p  205 (319)
T d1vrba1         126 VYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTP  205 (319)
T ss_dssp             EEEECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECT
T ss_pred             EEecCCCCCCccccCCCceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECC
Confidence            45555554 567876 566666699998876521                                     002468999


Q ss_pred             CcEEEEcCCcEEEEEEcCc
Q 031987          122 GDLVVFPKGMKITWDVIEA  140 (149)
Q Consensus       122 GD~v~~PkG~~~tW~v~e~  140 (149)
                      ||+++||+|+.|.=+..++
T Consensus       206 GDvLYiP~gw~H~v~s~~~  224 (319)
T d1vrba1         206 GTMLYLPRGLWHSTKSDQA  224 (319)
T ss_dssp             TCEEEECTTCEEEEECSSC
T ss_pred             CCEEEeCCCceEEeEecCC
Confidence            9999999999998776554

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.3  Score=37.83  Aligned_cols=59  Identities=10%  Similarity=0.020  Sum_probs=44.4

Q ss_pred             eeEecCCccc-cccCC-CceEEEEEEeEEEEEECC--------------------------------------cceEEEE
Q 031987           80 PKWGCPPSKF-PWTFT-ATETMYLLEGKVIVYVDG--------------------------------------REGSFEI  119 (149)
Q Consensus        80 giWe~~pg~f-~~h~~-~dE~~yVLEG~v~vt~dg--------------------------------------g~~~~~i  119 (149)
                      -+|-..+|.. ++|++ ++-+...++|+=++..=.                                      ..-..++
T Consensus       172 ~lwiG~~gs~t~~H~D~~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l  251 (335)
T d1h2ka_         172 LLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVV  251 (335)
T ss_dssp             EEEEECTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEE
T ss_pred             EEEEcCCCCCCccccccccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEE
Confidence            4788888876 56876 566778899998776410                                      0134679


Q ss_pred             cCCcEEEEcCCcEEEEEEc
Q 031987          120 GTGDLVVFPKGMKITWDVI  138 (149)
Q Consensus       120 ~aGD~v~~PkG~~~tW~v~  138 (149)
                      +|||++++|+|+.|.=+..
T Consensus       252 ~pGd~L~iP~~w~H~V~~~  270 (335)
T d1h2ka_         252 GPGDVLYIPMYWWHHIESL  270 (335)
T ss_dssp             CTTCEEEECTTCEEEEEEC
T ss_pred             CCCCEEeeCCCCeEEEEEc
Confidence            9999999999999987764

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.26  E-value=0.32  Score=34.30  Aligned_cols=44  Identities=14%  Similarity=0.228  Sum_probs=33.3

Q ss_pred             EecCCccccccC--CCceEEEEEEeEEEEEECCcceEEEEcCCcEEE
Q 031987           82 WGCPPSKFPWTF--TATETMYLLEGKVIVYVDGREGSFEIGTGDLVV  126 (149)
Q Consensus        82 We~~pg~f~~h~--~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~  126 (149)
                      ....||..-...  ..+++++|++|++.+..+++ ....+++||.+-
T Consensus        94 ~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~-~~~~l~~G~~fG  139 (193)
T d1q3ea_          94 EVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-KEMKLSDGSYFG  139 (193)
T ss_dssp             EEECTTCEEECTTSBCCEEEEEEECCEEEEC-CC-CEEEECTTCEEC
T ss_pred             HhhccCceecccCCCCcceeEeeeeeEEeecCCc-ceeeeccceeee
Confidence            344567665443  46899999999999988877 788999999874

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.81  E-value=0.39  Score=32.40  Aligned_cols=43  Identities=14%  Similarity=0.128  Sum_probs=33.0

Q ss_pred             ecCCcccccc--CCCceEEEEEEeEEEEEECCcceEEEEcCCcEEE
Q 031987           83 GCPPSKFPWT--FTATETMYLLEGKVIVYVDGREGSFEIGTGDLVV  126 (149)
Q Consensus        83 e~~pg~f~~h--~~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~  126 (149)
                      .-.+|..-.+  -..+.+++|++|++.+..++. ....+++||.+-
T Consensus        47 ~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~~~~-~~~~l~~G~~fG   91 (136)
T d1ne6a1          47 SFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFG   91 (136)
T ss_dssp             EECTTCEEECTTSCCCEEEEEEESCEEEEETTE-EEEEECTTCEEC
T ss_pred             EECCCCEEEeCCCCcceeeeecCCceeeecccc-ccceeccccccc
Confidence            4455655443  346789999999999999887 778899999874

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.47  E-value=0.39  Score=37.65  Aligned_cols=51  Identities=18%  Similarity=0.195  Sum_probs=39.8

Q ss_pred             CCceEEEE-EEeEEEEEECCcceEEEEcCCcEEEEcCCcE-EEEEEcC--ceEEEEE
Q 031987           94 TATETMYL-LEGKVIVYVDGREGSFEIGTGDLVVFPKGMK-ITWDVIE--AVNKHYS  146 (149)
Q Consensus        94 ~~dE~~yV-LEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~-~tW~v~e--~vrK~Yv  146 (149)
                      ..-|+..| |.|.++|++||.  .++++..|++++|+|.. .++....  .--|+|+
T Consensus        72 erRElgiVnigG~g~V~VDG~--~f~l~~~D~lYvg~G~~~V~f~s~da~~pa~fyi  126 (260)
T d1ywka1          72 ERRELGVINIGGPGFIEIDGA--KETMKKQDGYYIGKETKHVRFSSENPDNPAKFYI  126 (260)
T ss_dssp             TTEEEEEEECSSCEEEEETTE--EEEECTTCEEEECTTCCCEEEEESCTTSCCCEEE
T ss_pred             hhcEEEEEEeCCcEEEEECCE--EEecCCCcEEEECCCCceEEEeccCCCCCcEEEE
Confidence            45677665 899999999888  89999999999999974 6766543  2345665

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=86.12  E-value=1.3  Score=32.70  Aligned_cols=43  Identities=12%  Similarity=0.087  Sum_probs=33.9

Q ss_pred             CceEEEEEEeEEEEEECCcceEEEEcCCcEEEEcCCcEEEEEEcCceEE
Q 031987           95 ATETMYLLEGKVIVYVDGREGSFEIGTGDLVVFPKGMKITWDVIEAVNK  143 (149)
Q Consensus        95 ~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK  143 (149)
                      ..=++||++|++++   ++   ..+.+||.+.+-.+-..+.+..+..+-
T Consensus       181 ~~~~lyvi~G~l~i---~g---~~l~~gd~~~l~~~~~l~i~A~~~a~~  223 (231)
T d1tq5a1         181 RRVWIQVVKGNVTI---NG---VKASTSDGLAIWDEQAISIHADSDSEV  223 (231)
T ss_dssp             CEEEEEEEESEEEE---TT---EEEETTCEEEEESCSCEEEEESSSEEE
T ss_pred             ccEEEEEEeeEEEE---CC---EEccCCCeEEECCCCeEEEEECCCCEE
Confidence            44589999999987   34   368999999998888888888776543

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=83.51  E-value=0.37  Score=38.15  Aligned_cols=52  Identities=29%  Similarity=0.488  Sum_probs=39.4

Q ss_pred             CCCceEEEE-EEeEEEEEECCcceEEEEcCCcEEEEcCCcE-EEEEEcCc--eEEEEE
Q 031987           93 FTATETMYL-LEGKVIVYVDGREGSFEIGTGDLVVFPKGMK-ITWDVIEA--VNKHYS  146 (149)
Q Consensus        93 ~~~dE~~yV-LEG~v~vt~dgg~~~~~i~aGD~v~~PkG~~-~tW~v~e~--vrK~Yv  146 (149)
                      ...-|++.| |.|.++|++||.  +++++..|++++++|.. .++.....  --|+|.
T Consensus        73 LerRElgiVnlgG~g~V~VDG~--~feL~~rd~lYvg~G~~~V~f~s~da~~pa~fyl  128 (277)
T d1xrua1          73 LERRELGVINIGGAGTITVDGQ--CYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYY  128 (277)
T ss_dssp             TTTEEEEEEECSSCEEEEETTE--EEEECTTCEEEECTTCCCEEEEESCTTSCCCEEE
T ss_pred             hhccEEEEEEeCCCEEEEECCE--EEeeCCccEEEeCCCCceEEEeccCCCCCcEEEE
Confidence            456777665 899999999888  89999999999999964 55554322  235654

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.17  E-value=1.2  Score=28.90  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=27.0

Q ss_pred             CCceEEEEEEeEEEEEECCcceEEEEcCCcEEE
Q 031987           94 TATETMYLLEGKVIVYVDGREGSFEIGTGDLVV  126 (149)
Q Consensus        94 ~~dE~~yVLEG~v~vt~dgg~~~~~i~aGD~v~  126 (149)
                      ..+.+++|++|++.+...+......+++||.+-
T Consensus        51 ~~~~lyii~~G~v~~~~~~~~~~~~~~~G~~fG   83 (124)
T d1o7fa3          51 EGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFG   83 (124)
T ss_dssp             CCCEEEEEEESEEEEEETTTEEEEEEETTCEEC
T ss_pred             cCceEEEEEcceEEEEEeeeeecccccCCcchh
Confidence            468899999999999988764566799999774

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=81.93  E-value=5.2  Score=26.46  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=46.3

Q ss_pred             eeeEecC--Ccccc-ccC---CCceEEEEEEeEEEEEE--C--C--cceEEEEcCCcEEEEcCCcEEEEEEcCceEEE
Q 031987           79 WPKWGCP--PSKFP-WTF---TATETMYLLEGKVIVYV--D--G--REGSFEIGTGDLVVFPKGMKITWDVIEAVNKH  144 (149)
Q Consensus        79 ~giWe~~--pg~f~-~h~---~~dE~~yVLEG~v~vt~--d--g--g~~~~~i~aGD~v~~PkG~~~tW~v~e~vrK~  144 (149)
                      .++|..+  |..+. .|.   +.-.-..||+|++++..  |  +  .+....+.||+..++|+...|.=+-.++++-+
T Consensus        12 tP~ft~~tiP~~ll~~HnTK~Gvwg~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~sdD~~f~   89 (96)
T d3dl3a1          12 TPFFTKDNVPEALLTHHNTAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQFN   89 (96)
T ss_dssp             CCCBCTTTCCHHHHSSBCCCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEEE
T ss_pred             cCCCCcccChHHHHhhcCCCCceEEEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEeCCCeEEE
Confidence            4556555  44442 232   34567889999999853  1  1  12578899999999999999998887777643