Citrus Sinensis ID: 032034

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MVLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSKNRYTT
Secondary Structure (PSIPRED)
cEEEEEccHHHHHHHHcccccccccccccEEEEEEccccccccccccccccEEEEEEcccccHHHHHHHHHHHHcccccccccEEEEEEEEcccccEEEEEccccccHHHHHHHHHHHHHHccccccEEEEEcccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cEEEEcccHHHHHHHHHHccccccccccccHHHHHcccccccccccHccccEEEEEEccccccHHHHHHHHHHHHHHcHHHHHEEEEEEEccccccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccEEEc
Coil and Loop (DISEMBL)
mvlksfhssfsvfslynnihhpsklavgadfycfknkiepkwedpvcanggkwtvifpkgksdtSWLYTLLAMIGeqfdhgdeICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIfhedakhdnrsknrytt
Flexible Loop (DISEMBL)
MVLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISlwtknasneaaQMSIGKQWKELLDYSDTIGFIfhedakhdnrsknrytt
Low Complexity Region (SEG)
MVLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSKNRYTT
Disordered region (IsUnstruct)
******HSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFH***************
Disordered Region (DISOPRED)
MVLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGF***************YTT
Disordered Region (DISEMBL)
********SFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHD*********
Disordered Region (DISPRO)
MVLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNR*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSKNRYTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
O23252	235	Eukaryotic translation in	yes	no	0.966	0.608	0.75	4e-61
P48599	227	Eukaryotic translation in	yes	no	0.986	0.643	0.727	4e-60
P29557	215	Eukaryotic translation in	N/A	no	0.979	0.674	0.719	5e-59
O81481	218	Eukaryotic translation in	N/A	no	0.979	0.665	0.719	7e-59
Q9C7P6	240	Eukaryotic translation in	no	no	0.979	0.604	0.671	3e-55
Q9C7P2	240	Eukaryotic translation in	no	no	0.979	0.604	0.657	2e-54
Q03389	209	Eukaryotic translation in	N/A	no	0.966	0.684	0.544	4e-41
O81482	216	Eukaryotic translation in	N/A	no	0.966	0.662	0.537	6e-41
P48600	206	Eukaryotic translation in	no	no	0.959	0.689	0.520	1e-39
O04663	198	Eukaryotic translation in	no	no	0.932	0.696	0.472	5e-34

>sp|O23252|IF4E1_ARATH Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=1 SV=1

 Score =  233 bits (593), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 108/144 (75%), Positives = 125/144 (86%), Gaps = 1/144 (0%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDT 64
           +F +    +SLYNN+ HPSKLA GADFYCFK+ IEPKWEDP+CANGGKWT+ FPK KSD 
Sbjct: 91  TFSTVEEFWSLYNNMKHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDK 150

Query: 65  SWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 124
           SWLYTLLA+IGEQFDHGDEICGAVVN+R +QE+IS+WTKNASNEAAQ+SIGKQWKE LDY
Sbjct: 151 SWLYTLLALIGEQFDHGDEICGAVVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDY 210

Query: 125 SDTIGFIFHEDAKH-DNRSKNRYT 147
           +++IGFI HEDAK  D  +KN YT
Sbjct: 211 NNSIGFIIHEDAKKLDRNAKNAYT 234

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.
Arabidopsis thaliana (taxid: 3702)

>sp|P48599|IF4E1_ORYSJ Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1

 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/147 (72%), Positives = 125/147 (85%), Gaps = 1/147 (0%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    +SLYNNIHHPSKL VGADF+CFKNKIEPKWEDP+CANGGKWT    +GKS
Sbjct: 81  IHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKS 140

Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DT WL+TLLAMIGEQFD+GDEICGAVV+VR +QE+I++WTKNA+NEAAQ+SIGKQWKE L
Sbjct: 141 DTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKEFL 200

Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYTT 148
           DY D+IGFI H+DAK  D   KNRYT 
Sbjct: 201 DYKDSIGFIVHDDAKKMDKGLKNRYTV 227

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29557|IF4E1_WHEAT Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3

 Score =  226 bits (575), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 105/146 (71%), Positives = 124/146 (84%), Gaps = 1/146 (0%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    + LYNNIH+PSKL VGADF+CFKNKIEPKWEDP+CANGGKWT+   +GKS
Sbjct: 69  IHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKS 128

Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DT WL+TLLAMIGEQFD GDEICGAVV+VR +QE++++WTKNA+NEAAQ+SIGKQWKE L
Sbjct: 129 DTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFL 188

Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYT 147
           DY D+IGFI HEDAK  D   KNRYT
Sbjct: 189 DYKDSIGFIVHEDAKRSDKGPKNRYT 214

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|O81481|IF4E1_MAIZE Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1

 Score =  225 bits (574), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 105/146 (71%), Positives = 125/146 (85%), Gaps = 1/146 (0%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    + LYNNI+HPSKL VGADF+CFKNKIEPKWEDP+CANGGKWT+   +GKS
Sbjct: 72  IHTFSTVEEFWGLYNNINHPSKLIVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKS 131

Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DT WL+TLLAMIGEQFD+GDEICGAVV+VR +QE+I++WTKNA+NEAAQ+SIGKQWKELL
Sbjct: 132 DTFWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQVSIGKQWKELL 191

Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYT 147
           DY D+IGFI H+DAK  D   K RYT
Sbjct: 192 DYKDSIGFIVHDDAKKMDKGLKERYT 217

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|Q9C7P6|IF4E3_ARATH Eukaryotic translation initiation factor 4E-3 OS=Arabidopsis thaliana GN=EIF4E3 PE=1 SV=1

 Score =  213 bits (542), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 98/146 (67%), Positives = 119/146 (81%), Gaps = 1/146 (0%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           L +F +    +SLYNNIH P+K   GAD YCFK+KIEPKWEDP+CANGGKW+++FPK   
Sbjct: 94  LYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKDKIEPKWEDPICANGGKWSMMFPKATL 153

Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           + +WL TLLA++GEQFD GDEICGAV+N RAR ++ISLWTKNA+NE AQ+SIGKQWKELL
Sbjct: 154 ECNWLNTLLALVGEQFDQGDEICGAVLNFRARGDRISLWTKNAANEEAQLSIGKQWKELL 213

Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYT 147
            Y++TIGFI HEDAK  D  +K RYT
Sbjct: 214 GYNETIGFIVHEDAKTLDRDAKRRYT 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7P2|IF4E2_ARATH Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2

 Score =  211 bits (536), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 96/146 (65%), Positives = 117/146 (80%), Gaps = 1/146 (0%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           L +F +    +SLYNNIH P+K   G+D YCFK+KIEPKWEDP+CANGGKWT+ FP+   
Sbjct: 94  LYTFATIEEFWSLYNNIHPPTKWVSGSDLYCFKDKIEPKWEDPICANGGKWTMFFPRATL 153

Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           +++WL TLLA++GEQFD GDEICGAV+N R R ++ISLWTK A+NE AQ+SIGKQWKELL
Sbjct: 154 ESNWLNTLLALVGEQFDQGDEICGAVLNFRTRGDRISLWTKKAANEEAQLSIGKQWKELL 213

Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYT 147
            Y+DTIGFI HEDAK  D  +K RYT
Sbjct: 214 GYNDTIGFIVHEDAKTLDRDAKRRYT 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q03389|IF4E2_WHEAT Eukaryotic translation initiation factor isoform 4E-2 OS=Triticum aestivum PE=1 SV=1

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/145 (54%), Positives = 103/145 (71%), Gaps = 2/145 (1%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS-D 63
           +F +    + LY+ I  PSKL   ADF+ FK  +EPKWEDP CANGGKWTVI  +  + D
Sbjct: 64  TFDTVEEFWCLYDQIFRPSKLVGSADFHLFKAGVEPKWEDPECANGGKWTVISSRKTNLD 123

Query: 64  TSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 123
           T WL T +A+IGEQFD   EICG V +VR RQ+K+SLWTK ASNEA Q+ IGK+WKE++D
Sbjct: 124 TMWLETCMALIGEQFDESQEICGVVASVRQRQDKLSLWTKTASNEAVQVDIGKKWKEVID 183

Query: 124 YSDTIGFIFHEDAKHDNRSK-NRYT 147
           Y+D + + FH+D++    S+  RYT
Sbjct: 184 YNDKMVYSFHDDSRSQKPSRGGRYT 208

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|O81482|IF4E2_MAIZE Eukaryotic translation initiation factor isoform 4E-2 OS=Zea mays PE=2 SV=1

 Score =  166 bits (419), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 107/145 (73%), Gaps = 2/145 (1%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTV-IFPKGKSD 63
           +F +    +S+Y+ I  PSKL+  ADF+ FK  +EPKWEDP CANGGKWTV    K   +
Sbjct: 71  TFDTVEEFWSMYDQIFRPSKLSGNADFHLFKAGVEPKWEDPECANGGKWTVPCNRKATFE 130

Query: 64  TSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 123
           T WL TL+A+IGEQFD  ++ICG V +VRAR +K++LWT+ ASNEA Q++IGK+WK+++D
Sbjct: 131 TMWLETLMALIGEQFDETEDICGIVASVRARGDKLALWTRTASNEAVQVNIGKKWKDVID 190

Query: 124 YSDTIGFIFHEDAKHDNRSK-NRYT 147
           Y+D I + FH+D+K D  S+  RYT
Sbjct: 191 YNDKITYTFHDDSKRDKPSRGGRYT 215

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|P48600|IF4E2_ORYSJ Eukaryotic translation initiation factor isoform 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 104/144 (72%), Gaps = 2/144 (1%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS-D 63
           +F +    + LY+ I  PSK+ V ADF+ FK  +EPKWEDP CANGGKWTV   +  + +
Sbjct: 61  TFDTVEEFWGLYDQIFRPSKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRKTTLE 120

Query: 64  TSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 123
             WL TL+A+IGEQFD  +EICG V +VR R +K++LWT+ ASNEA Q++IGK+WKE++D
Sbjct: 121 NMWLETLMALIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQVNIGKKWKEIVD 180

Query: 124 YSDTIGFIFHEDAKHDNRSK-NRY 146
           Y+D + + FH+DAK +  S+  RY
Sbjct: 181 YNDKMVYSFHDDAKREKPSRGGRY 204

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04663|IF4E4_ARATH Eukaryotic translation initiation factor isoform 4E OS=Arabidopsis thaliana GN=EIF(ISO)4E PE=1 SV=2

 Score =  143 bits (360), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 96/148 (64%), Gaps = 10/148 (6%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS-- 62
           +F +    + L+  I   SKL   A+ + FK  +EPKWEDP CANGGKWT +    +   
Sbjct: 55  TFDTVEDFWGLHETIFQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEA 114

Query: 63  -DTSWLYTLLAMIGEQFDHGDEICGAVVNVR--ARQEKISLWTKNASNEAAQMSIGKQWK 119
            D  WL TL+A+IGEQFD  DEICG V +VR  ++Q+K+SLWT+  SNEA  M IGK+WK
Sbjct: 115 LDKGWLETLMALIGEQFDEADEICGVVASVRPQSKQDKLSLWTRTKSNEAVLMGIGKKWK 174

Query: 120 ELLDYSDTIGFIFHEDAKHDNRSKNRYT 147
           E+LD +D I F  H+D++     ++R+T
Sbjct: 175 EILDVTDKITFNNHDDSR-----RSRFT 197

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. Mediates susceptibility to Turnipmosaic potyvirus (TuMV) and Tobacco etch potyvirus (TEV).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
225462474	236	PREDICTED: eukaryotic translation initia	0.979	0.614	0.815	2e-65
405110161	231	eukaryotic translation initiation factor	0.972	0.623	0.8	2e-65
297740595	150	unnamed protein product [Vitis vinifera]	0.979	0.966	0.815	3e-65
224038406	236	eukaryotic translation initiation factor	0.972	0.610	0.806	2e-64
351723243	237	eukaryotic translation initiation factor	0.972	0.607	0.779	5e-64
32698524	230	eukaryotic translation initiation factor	0.966	0.621	0.812	7e-64
356555482	233	PREDICTED: eukaryotic translation initia	0.986	0.626	0.775	1e-63
255557481	234	eukaryotic translation initiation factor	0.966	0.611	0.798	3e-63
48431257	228	eukaryotic translation initiation factor	0.986	0.640	0.768	5e-63
328690439	152	EIF4E [Helianthus annuus] gi|328690441|g	0.972	0.947	0.786	5e-63

>gi|225462474|ref|XP_002267488.1| PREDICTED: eukaryotic translation initiation factor 4E-1 [Vitis vinifera]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 132/146 (90%), Gaps = 1/146 (0%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    +S+YNNIHHPSKLAVGADF+CFK+KIEPKWEDPVCANGGKWTV F KGKS
Sbjct: 90  IYTFSNVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPVCANGGKWTVTFAKGKS 149

Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DT WLYTLLAMIGEQFDHGDEICGAV+NVRARQEKI+LWTKNASNEAAQ+SIGKQWKE L
Sbjct: 150 DTCWLYTLLAMIGEQFDHGDEICGAVINVRARQEKIALWTKNASNEAAQLSIGKQWKEFL 209

Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYT 147
           DYS++IGFIFHEDAK  D  +KNRYT
Sbjct: 210 DYSESIGFIFHEDAKKLDRAAKNRYT 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|405110161|emb|CCM43797.1| eukaryotic translation initiation factor 4E [Arachis hypogaea]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/145 (80%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    +S+YNNIHHPSKLAVGADF+CFK+KIEPKWEDP+CANGGKWT+ FP+GKS
Sbjct: 85  IYTFATVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPICANGGKWTMTFPRGKS 144

Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DTSWLYTLL MIGEQFDHGDEICGAVVNVR RQEKI+LWTKNA+NEAAQ+SIGKQWKE L
Sbjct: 145 DTSWLYTLLGMIGEQFDHGDEICGAVVNVRNRQEKIALWTKNAANEAAQVSIGKQWKEFL 204

Query: 123 DYSDTIGFIFHEDA-KHDNRSKNRY 146
           DY+DTIGFIFHEDA KHD  +KN+Y
Sbjct: 205 DYNDTIGFIFHEDAKKHDRAAKNKY 229

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740595|emb|CBI30777.3| unnamed protein product [Vitis vinifera]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 132/146 (90%), Gaps = 1/146 (0%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    +S+YNNIHHPSKLAVGADF+CFK+KIEPKWEDPVCANGGKWTV F KGKS
Sbjct: 4   IYTFSNVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPVCANGGKWTVTFAKGKS 63

Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DT WLYTLLAMIGEQFDHGDEICGAV+NVRARQEKI+LWTKNASNEAAQ+SIGKQWKE L
Sbjct: 64  DTCWLYTLLAMIGEQFDHGDEICGAVINVRARQEKIALWTKNASNEAAQLSIGKQWKEFL 123

Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYT 147
           DYS++IGFIFHEDAK  D  +KNRYT
Sbjct: 124 DYSESIGFIFHEDAKKLDRAAKNRYT 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224038406|gb|ACN38307.1| eukaryotic translation initiation factor 4e [Carica papaya]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/145 (80%), Positives = 129/145 (88%), Gaps = 1/145 (0%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDT 64
           +F +    +SLYNNIHHPSKLAVGADFYCFK+KIEPKWEDPVCANGGKWT+ F +GKSDT
Sbjct: 92  TFRTVEEFWSLYNNIHHPSKLAVGADFYCFKHKIEPKWEDPVCANGGKWTMNFQRGKSDT 151

Query: 65  SWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 124
            WLYTLLAMIGEQFDHGDEICG VVNVR RQEKI+LWTKNA+NEAAQMSIGKQWKE LDY
Sbjct: 152 CWLYTLLAMIGEQFDHGDEICGVVVNVRGRQEKIALWTKNAANEAAQMSIGKQWKEFLDY 211

Query: 125 SDTIGFIFHEDAKHDNR-SKNRYTT 148
           +DT+GFIFHEDAK   R +KNRY+ 
Sbjct: 212 NDTMGFIFHEDAKKLERAAKNRYSV 236

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723243|ref|NP_001237528.1| eukaryotic translation initiation factor 4E [Glycine max] gi|222142543|gb|ACM45958.1| eukaryotic translation initiation factor 4E [Glycine max]

 Score =  248 bits (633), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/145 (77%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    +S+YNNIHHPSKL +GADF+CFK+KIEPKWEDP+CANGGKWT+ FP+GKS
Sbjct: 91  IYTFATVEEFWSIYNNIHHPSKLGLGADFHCFKHKIEPKWEDPICANGGKWTMTFPRGKS 150

Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DTSWLYTLLAMIGEQFDHGDEICGAVVNVR+RQ+KI++WTKNASNEAAQ+SIGKQWKE L
Sbjct: 151 DTSWLYTLLAMIGEQFDHGDEICGAVVNVRSRQDKIAIWTKNASNEAAQVSIGKQWKEFL 210

Query: 123 DYSDTIGFIFHEDAKHDNR-SKNRY 146
           DY+DTIGFIFHEDAK  +R +KN+Y
Sbjct: 211 DYNDTIGFIFHEDAKKLDRGAKNKY 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32698524|gb|AAP86602.1| eukaryotic translation initiation factor 4E [Lactuca sativa]

 Score =  248 bits (633), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 129/144 (89%), Gaps = 1/144 (0%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDT 64
           +F S    +SLYNNIH PSKLA GADFYCFKNKIEPKWEDPVCANGGKWT+ F K KSDT
Sbjct: 86  TFSSVEEFWSLYNNIHRPSKLAQGADFYCFKNKIEPKWEDPVCANGGKWTMTFTKAKSDT 145

Query: 65  SWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 124
            WLYTLLAMIGEQFDHGD+ICGAVVNVRARQEKI+LWTKNA+NE+AQ+SIGKQWKE +DY
Sbjct: 146 CWLYTLLAMIGEQFDHGDDICGAVVNVRARQEKIALWTKNAANESAQLSIGKQWKEFIDY 205

Query: 125 SDTIGFIFHEDAKHDNRS-KNRYT 147
           +DTIGFIFHEDAK  +RS KN+YT
Sbjct: 206 NDTIGFIFHEDAKTLDRSAKNKYT 229

Source: Lactuca sativa

Species: Lactuca sativa

Genus: Lactuca

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555482|ref|XP_003546060.1| PREDICTED: eukaryotic translation initiation factor 4E-1-like [Glycine max]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 131/147 (89%), Gaps = 1/147 (0%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    +S+YNNIHHPSKL VGADF+CFK+KIEPKWEDP+CANGGKWT+ F +GKS
Sbjct: 87  IYTFATVEEFWSIYNNIHHPSKLGVGADFHCFKHKIEPKWEDPICANGGKWTMTFQRGKS 146

Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DTSWLYTLLAMIGEQFDHGDEICGAVVNVR+RQEKI++WTKNASNEAAQ+SIGKQWKE L
Sbjct: 147 DTSWLYTLLAMIGEQFDHGDEICGAVVNVRSRQEKIAIWTKNASNEAAQVSIGKQWKEFL 206

Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYTT 148
           DY+DTIGFIFHEDAK  D  +KN+Y  
Sbjct: 207 DYNDTIGFIFHEDAKKLDRGAKNKYVV 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557481|ref|XP_002519771.1| eukaryotic translation initiation factor 4e, putative [Ricinus communis] gi|223541188|gb|EEF42744.1| eukaryotic translation initiation factor 4e, putative [Ricinus communis]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 131/144 (90%), Gaps = 1/144 (0%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDT 64
           +F +    +S+YNNIHHPSKLAVGADF+CFK+KIEPKWEDPVCANGGKWT+ F KGKSD 
Sbjct: 90  TFATVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPVCANGGKWTLTFQKGKSDG 149

Query: 65  SWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 124
           SWL TLLAMIGEQF+ GDEICGAVV+VRARQEKI+LWTKNA+NEAAQ+SIGKQWKELLDY
Sbjct: 150 SWLNTLLAMIGEQFERGDEICGAVVSVRARQEKIALWTKNAANEAAQLSIGKQWKELLDY 209

Query: 125 SDTIGFIFHEDA-KHDNRSKNRYT 147
           +DTIGFIFH+DA KH+  +KNRYT
Sbjct: 210 NDTIGFIFHDDAKKHERSAKNRYT 233

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48431257|gb|AAR04332.2| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/147 (76%), Positives = 129/147 (87%), Gaps = 1/147 (0%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    +S+YNNIHHP KLAVGADFYCFK+KIEPKWEDP+CANGGKWT  +PKGKS
Sbjct: 82  IYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKS 141

Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DTSWLYTLLAMIGEQFDHGDEICGAVVNVR R EKIS+WTKNASNEAAQ+SIGKQWKE L
Sbjct: 142 DTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFL 201

Query: 123 DYSDTIGFIFHEDA-KHDNRSKNRYTT 148
           DY++T+GFIFH+DA K D  +KN+Y  
Sbjct: 202 DYNETMGFIFHDDARKLDRNAKNKYVV 228

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|328690439|gb|AEB36831.1| EIF4E [Helianthus annuus] gi|328690441|gb|AEB36832.1| EIF4E [Helianthus annuus]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 127/145 (87%), Gaps = 1/145 (0%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDT 64
           +F +    +SLYNNIH PS+LA GAD +CFKN+IEPKWEDPVCA GGKWT+ FPK KSDT
Sbjct: 8   TFSTVEEFWSLYNNIHRPSRLAAGADLHCFKNRIEPKWEDPVCAGGGKWTMTFPKSKSDT 67

Query: 65  SWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 124
            WLYTLLAMIGEQFDHGDEICGAVVNVR+RQEKI+LWTKNA+NE AQMSIGKQWKE LDY
Sbjct: 68  CWLYTLLAMIGEQFDHGDEICGAVVNVRSRQEKIALWTKNAANEPAQMSIGKQWKEFLDY 127

Query: 125 SDTIGFIFHEDAKHDNR-SKNRYTT 148
           SD IGFIFHEDAK  +R +KN+YTT
Sbjct: 128 SDMIGFIFHEDAKKLDRGAKNKYTT 152

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:2117647	235	EIF4E "AT4G18040" [Arabidopsis	0.966	0.608	0.75	9.3e-59
TAIR|locus:2013748	240	AT1G29550 [Arabidopsis thalian	0.979	0.604	0.671	2.7e-52
UNIPROTKB|Q03389	209	Q03389 "Eukaryotic translation	0.966	0.684	0.551	3.3e-40
TAIR|locus:2165892	198	LSP1 "LOSS OF SUSCEPTIBILITY T	0.898	0.671	0.507	3.2e-33
FB|FBgn0015218	259	eIF-4E "Eukaryotic initiation	0.979	0.559	0.381	1.9e-26
ZFIN|ZDB-GENE-050417-398	230	eif4e1c "eukaryotic translatio	0.986	0.634	0.419	2.5e-26
DICTYBASE|DDB_G0268574	250	eIF4e "eukaryotic translation	0.959	0.568	0.409	1.1e-25
FB|FBgn0035823	232	eIF4E-5 "eIF4E-5" [Drosophila	0.912	0.581	0.425	1.8e-25
UNIPROTKB|F1N030	230	EIF4E1B "Uncharacterized prote	0.952	0.613	0.4	3.6e-25
UNIPROTKB|F1S3A3	248	EIF4E1B "Uncharacterized prote	0.979	0.584	0.376	7.6e-25

TAIR|locus:2117647 EIF4E "AT4G18040" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 108/144 (75%), Positives = 125/144 (86%)

Query:     5 SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDT 64
             +F +    +SLYNN+ HPSKLA GADFYCFK+ IEPKWEDP+CANGGKWT+ FPK KSD 
Sbjct:    91 TFSTVEEFWSLYNNMKHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDK 150

Query:    65 SWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 124
             SWLYTLLA+IGEQFDHGDEICGAVVN+R +QE+IS+WTKNASNEAAQ+SIGKQWKE LDY
Sbjct:   151 SWLYTLLALIGEQFDHGDEICGAVVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDY 210

Query:   125 SDTIGFIFHEDAKH-DNRSKNRYT 147
             +++IGFI HEDAK  D  +KN YT
Sbjct:   211 NNSIGFIIHEDAKKLDRNAKNAYT 234

GO:0000339 "RNA cap binding" evidence=TAS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISS;IDA;TAS

GO:0006413 "translational initiation" evidence=IEA;ISS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009615 "response to virus" evidence=IMP

TAIR|locus:2013748 AT1G29550 [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 98/146 (67%), Positives = 119/146 (81%)

Query:     3 LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
             L +F +    +SLYNNIH P+K   GAD YCFK+KIEPKWEDP+CANGGKW+++FPK   
Sbjct:    94 LYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKDKIEPKWEDPICANGGKWSMMFPKATL 153

Query:    63 DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
             + +WL TLLA++GEQFD GDEICGAV+N RAR ++ISLWTKNA+NE AQ+SIGKQWKELL
Sbjct:   154 ECNWLNTLLALVGEQFDQGDEICGAVLNFRARGDRISLWTKNAANEEAQLSIGKQWKELL 213

Query:   123 DYSDTIGFIFHEDAKH-DNRSKNRYT 147
              Y++TIGFI HEDAK  D  +K RYT
Sbjct:   214 GYNETIGFIVHEDAKTLDRDAKRRYT 239

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

UNIPROTKB|Q03389 Q03389 "Eukaryotic translation initiation factor isoform 4E-2" [Triticum aestivum (taxid:4565)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 80/145 (55%), Positives = 102/145 (70%)

Query:     5 SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFP-KGKSD 63
             +F +    + LY+ I  PSKL   ADF+ FK  +EPKWEDP CANGGKWTVI   K   D
Sbjct:    64 TFDTVEEFWCLYDQIFRPSKLVGSADFHLFKAGVEPKWEDPECANGGKWTVISSRKTNLD 123

Query:    64 TSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 123
             T WL T +A+IGEQFD   EICG V +VR RQ+K+SLWTK ASNEA Q+ IGK+WKE++D
Sbjct:   124 TMWLETCMALIGEQFDESQEICGVVASVRQRQDKLSLWTKTASNEAVQVDIGKKWKEVID 183

Query:   124 YSDTIGFIFHEDAKHDNRSKN-RYT 147
             Y+D + + FH+D++    S+  RYT
Sbjct:   184 YNDKMVYSFHDDSRSQKPSRGGRYT 208

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2165892 LSP1 "LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 70/138 (50%), Positives = 92/138 (66%)

Query:     5 SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT-VIFPKGKS- 62
             +F +    + L+  I   SKL   A+ + FK  +EPKWEDP CANGGKWT V+    K  
Sbjct:    55 TFDTVEDFWGLHETIFQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEA 114

Query:    63 -DTSWLYTLLAMIGEQFDHGDEICGAVVNVR--ARQEKISLWTKNASNEAAQMSIGKQWK 119
              D  WL TL+A+IGEQFD  DEICG V +VR  ++Q+K+SLWT+  SNEA  M IGK+WK
Sbjct:   115 LDKGWLETLMALIGEQFDEADEICGVVASVRPQSKQDKLSLWTRTKSNEAVLMGIGKKWK 174

Query:   120 ELLDYSDTIGFIFHEDAK 137
             E+LD +D I F  H+D++
Sbjct:   175 EILDVTDKITFNNHDDSR 192

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS;TAS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS;IDA;TAS

GO:0006413 "translational initiation" evidence=IEA;ISS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0050687 "negative regulation of defense response to virus" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=TAS

GO:0009615 "response to virus" evidence=IMP

FB|FBgn0015218 eIF-4E "Eukaryotic initiation factor 4E" [Drosophila melanogaster (taxid:7227)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 58/152 (38%), Positives = 89/152 (58%)

Query:     3 LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
             + SF +    +SLYN+I  PS++ +G+D+  FK  I P WED     GG+W +   K   
Sbjct:   107 ITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSK 166

Query:    63 ---DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWK 119
                D  WL  LL +IGE FDH D+ICGAV+N+R +  KIS+WT + +NE A + IG + +
Sbjct:   167 TDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLR 226

Query:   120 ELLDY--SDTIGFIFHEDA--KHDNRSKNRYT 147
             + L    ++++ +  H+D   K  +  K+ YT
Sbjct:   227 DALRLGRNNSLQYQLHKDTMVKQGSNVKSIYT 258

GO:0016281 "eukaryotic translation initiation factor 4F complex" evidence=ISS;NAS;IDA;IPI

GO:0006412 "translation" evidence=ISS;NAS;IDA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IDA

GO:0003743 "translation initiation factor activity" evidence=IGI;ISS;NAS;IDA

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0016070 "RNA metabolic process" evidence=NAS;IDA

GO:0006413 "translational initiation" evidence=IGI;NAS;IDA

GO:0000339 "RNA cap binding" evidence=ISS;NAS;IDA

GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0016321 "female meiosis chromosome segregation" evidence=IMP

GO:0007076 "mitotic chromosome condensation" evidence=IMP

GO:0006325 "chromatin organization" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0001558 "regulation of cell growth" evidence=IMP

GO:0030307 "positive regulation of cell growth" evidence=TAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0014069 "postsynaptic density" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-050417-398 eif4e1c "eukaryotic translation initiation factor 4E family member 1c" [Danio rerio (taxid:7955)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 65/155 (41%), Positives = 93/155 (60%)

Query:     2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK 61
             ++  F +    ++LYN+I  PSKL  G D+  FK+ I+P WED     GG+W +   K +
Sbjct:    75 LISKFDTVEDFWALYNHIQQPSKLGFGCDYCLFKDGIKPMWEDDRNKLGGRWLMTLSKQQ 134

Query:    62 S----DTSWLYTLLAMIGEQFDHGDE-ICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
                  D  W+ TLL +IGE FD   E +CGAVVNVR + +KI++WT N  N  A M+IG+
Sbjct:   135 RHNDLDRYWMETLLCLIGESFDEASEDVCGAVVNVRPKGDKIAIWTGNCQNRDAIMTIGQ 194

Query:   117 QWKELLDY-SDT-IGFIFHED--AKHDNRSKNRYT 147
             Q+KE L   S T IG+  H+D  +K  + +KN Y+
Sbjct:   195 QYKERLSLPSKTLIGYQSHDDTSSKSGSTTKNMYS 229

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

DICTYBASE|DDB_G0268574 eIF4e "eukaryotic translation initiation factor 4E" [Dictyostelium discoideum (taxid:44689)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 59/144 (40%), Positives = 84/144 (58%)

Query:     5 SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFP-KGKSD 63
             SF S    + ++NN+ + S L  G+ ++ FK+ IEPKWE      GGKW V+   K + D
Sbjct:   105 SFDSVEDFWCVFNNLPNVSNLKQGSSYHLFKDDIEPKWEHESNKRGGKWFVMVKDKSRCD 164

Query:    64 TSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 123
               WL +++A +GE FD  DEICG V N R   +KIS+WTK A +E A   +G   K++L+
Sbjct:   165 NQWLQSVMACVGETFDSSDEICGIVYNSRKNGDKISVWTKTAQDEKATRDVGNCLKKILE 224

Query:   124 YSDTIGFIFHEDAKHDNR-SKNRY 146
                TI +  HED    ++ SKN Y
Sbjct:   225 IDQTIQYTPHEDFIRSSKGSKNLY 248

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006417 "regulation of translation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0035823 eIF4E-5 "eIF4E-5" [Drosophila melanogaster (taxid:7227)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 60/141 (42%), Positives = 85/141 (60%)

Query:    13 FSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYT 69
             +SLY+ I  P++L +G D+  FK  I+P WED     GG+W V   K      D  WL  
Sbjct:    91 WSLYHTIKTPAELKIGCDYSVFKKGIKPMWEDEANIKGGRWLVTVSKSAKAELDQIWLDI 150

Query:    70 LLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY-SDTI 128
             LL M+G+ F++ DEICGAV+N+R +  KIS+WT N SNE A + IG++ K LL   S ++
Sbjct:   151 LLLMVGQNFEYSDEICGAVINIRNKSNKISVWTANGSNEMAILEIGQKLKILLHLQSHSL 210

Query:   129 GFIFHEDA--KHDNRSKNRYT 147
              +  H DA  K ++  K+ YT
Sbjct:   211 QYQLHSDAMSKFNSGVKSVYT 231

GO:0003743 "translation initiation factor activity" evidence=IGI;ISS

GO:0000339 "RNA cap binding" evidence=ISS

GO:0016281 "eukaryotic translation initiation factor 4F complex" evidence=ISS;IPI

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IDA

GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IPI

GO:0006413 "translational initiation" evidence=IGI

UNIPROTKB|F1N030 EIF4E1B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 60/150 (40%), Positives = 91/150 (60%)

Query:     6 FHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS--- 62
             F++    +++YNNI   SKL+ G D+  FK+ I+P WED     GG+W V   K +    
Sbjct:    79 FNTVEDFWAIYNNIQLASKLSSGCDYALFKDGIKPMWEDSRNKRGGRWLVSLTKQQRHIE 138

Query:    63 -DTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKE 120
              D  WL TLL +IGE F +H  E+CGAV+N+RA+ +KI++WT+ A N+   + IG+ +KE
Sbjct:   139 LDHLWLETLLCLIGESFGEHSQEVCGAVINIRAKGDKIAVWTREAENQEGVLHIGRVYKE 198

Query:   121 LLDYSDT--IGFIFHEDA--KHDNRSKNRY 146
              L  S    IG+  H D   K ++ +KN++
Sbjct:   199 RLGLSTKTIIGYQAHADTATKSNSLAKNKF 228

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1S3A3 EIF4E1B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 58/154 (37%), Positives = 92/154 (59%)

Query:     2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPK-- 59
             ++  F +    +++Y+NI   SKL+ G D+  FK+ IEP WED     GG+W V   K  
Sbjct:    93 LVTKFDTVEDFWAMYSNIQLASKLSCGCDYALFKDGIEPMWEDSRNKRGGRWLVSLAKQQ 152

Query:    60 --GKSDTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
                + D  WL TLL +IGE F+ H  ++CGAV+N+R +++KI++WT+ A N+   + IG+
Sbjct:   153 RHSELDHLWLETLLCLIGESFEEHSQDVCGAVINIRTKRDKIAVWTREAENQEGVLHIGR 212

Query:   117 QWKELLDYSD--TIGFIFHEDA--KHDNRSKNRY 146
              +KE L  S    IG+  H D   K ++ +KN++
Sbjct:   213 VYKERLGLSTKTVIGYQAHADTATKSNSLAKNKF 246

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23252	IF4E1_ARATH	No assigned EC number	0.75	0.9662	0.6085	yes	no
O81481	IF4E1_MAIZE	No assigned EC number	0.7191	0.9797	0.6651	N/A	no
P29557	IF4E1_WHEAT	No assigned EC number	0.7191	0.9797	0.6744	N/A	no
P48599	IF4E1_ORYSJ	No assigned EC number	0.7278	0.9864	0.6431	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
pfam01652	162	pfam01652, IF4E, Eukaryotic initiation factor 4E	4e-61
COG5053	217	COG5053, CDC33, Translation initiation factor 4E (	3e-22
PTZ00040	233	PTZ00040, PTZ00040, translation initiation factor	1e-08

>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E

 Score =  185 bits (471), Expect = 4e-61
 Identities = 67/124 (54%), Positives = 86/124 (69%), Gaps = 3/124 (2%)

Query: 13  FSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKG-KSDTSWLYTLL 71
           + LYNNI  PSKL +G+D++ FK  I+P WEDP   NGGKWT+  PK    D  W   LL
Sbjct: 39  WRLYNNIPRPSKLPLGSDYHLFKKGIKPMWEDPANKNGGKWTIRLPKSQNLDRFWEELLL 98

Query: 72  AMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIG 129
           A+IGEQFD  DEICG V++VR +++KIS+WTKNASNE A + IGK+ KE+L    +D I 
Sbjct: 99  ALIGEQFDESDEICGVVLSVRKKEDKISVWTKNASNEEALLRIGKKLKEVLGLPPNDKIE 158

Query: 130 FIFH 133
           +  H
Sbjct: 159 YKPH 162

Length = 162

>gnl|CDD|227386 COG5053, CDC33, Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

 Score = 87.6 bits (217), Expect = 3e-22
 Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 6/147 (4%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDT 64
           +F +    + + +NI   S+L   +D+  F+  I P+WED    NGGKW+        D 
Sbjct: 67  TFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMNGGKWSFQLKGKGCDR 126

Query: 65  ---SWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKE 120
               WL TLLA IGE  D  G EI G V N+R    K+++WT+N +N+    +IG ++K+
Sbjct: 127 LDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVLGAIGNEFKQ 186

Query: 121 LLDYSD--TIGFIFHEDAKHDNRSKNR 145
           +L+ SD  T+ +  HE +K  +     
Sbjct: 187 VLELSDVETLEYKAHESSKLGSYHAKT 213

Length = 217

>gnl|CDD|240238 PTZ00040, PTZ00040, translation initiation factor E4; Provisional

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 24/144 (16%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADF---------------YCFKNKIEPKWEDPVC 47
           L SF S    + L+ NI  PS+L  G                    FK+ I+P WEDP+ 
Sbjct: 68  LASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIFKDGIQPMWEDPMN 127

Query: 48  ANGGK-----WTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGA----VVNVRARQEKI 98
           A GG      W      G+ D  W   +LA+IG   +H   I G      ++ R    +I
Sbjct: 128 ATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRI 187

Query: 99  SLWTKNASNEAAQMSIGKQWKELL 122
            +W  N  +++ +  + K+ +  +
Sbjct: 188 EIWFTNLGDQSDRNQLMKEIETCM 211

Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
KOG1670	212	consensus Translation initiation factor 4F, cap-bi	100.0
PF01652	165	IF4E: Eukaryotic initiation factor 4E; InterPro: I	100.0
KOG1669	208	consensus Predicted mRNA cap-binding protein relat	100.0
PTZ00040	233	translation initiation factor E4; Provisional	100.0
COG5053	217	CDC33 Translation initiation factor 4E (eIF-4E) [T	100.0
PF08939	243	DUF1917: Domain of unknown function (DUF1917); Int	96.4

>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.7e-57  Score=353.24  Aligned_cols=147  Identities=52%  Similarity=0.919  Sum_probs=140.7

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCC---cHHHHHHHHHHHhcCCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK---SDTSWLYTLLAMIGEQF   78 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~---~~~~W~~lll~~Ige~f   78 (148)
                      .|.+|+|||+||++|+||++||+|+.+|||++||+||+||||||+|.|||||++.+++..   .|.+|+++||++|||+|
T Consensus        60 ~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~f  139 (212)
T KOG1670|consen   60 EVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKNGGRWLITVPKSGKAELDELWLETLLALIGEQF  139 (212)
T ss_pred             hccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCccccCCCeEEEEecCcchhhHHHHHHHHHHHHHhhhc
Confidence            478999999999999999999999999999999999999999999999999999999753   39999999999999999


Q ss_pred             CCCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCC-CceeEEEccccc--CCCCCCceeEC
Q 032034           79 DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS-DTIGFIFHEDAK--HDNRSKNRYTT  148 (148)
Q Consensus        79 ~~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~-~~i~~~~h~~~~--~~~~~~~~~~~  148 (148)
                      +++++|||+|+++|++++|||||++++++++.+.+||..+|++|+++ ..|+|+.|.++.  ++|.+|++|++
T Consensus       140 d~~deICGaV~NiR~k~~KISvWT~~~~ne~~~l~IG~~~Ke~L~~~~~~i~y~~H~ds~~k~~s~~K~~~tv  212 (212)
T KOG1670|consen  140 DHSDEICGAVVNIRGKGDKISVWTKNAGNEEAVLRIGRVLKEVLGLPRDVIGYQLHKDSSKKSGSTAKNRYTV  212 (212)
T ss_pred             cccccceeEEEEeccCCceEEEEecCCCchHHHHHHHHHHHHHhCCCcceEEEEechhhHhhcCCcccceecC
Confidence            99999999999999999999999999999999999999999999998 679999999988  78999999985

>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs

Probab=100.00  E-value=7.3e-48  Score=293.11  Aligned_cols=132  Identities=44%  Similarity=0.801  Sum_probs=123.0

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCC---CcHHHHHHHHHHHhcCCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKG---KSDTSWLYTLLAMIGEQF   78 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~---~~~~~W~~lll~~Ige~f   78 (148)
                      .|++|+|||+||++|++|++|++|+.+++|+|||+||+||||||+|++||+|+++++++   ..+++|++|+|++|||+|
T Consensus        28 ~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~i~~~~~~~~~~~~~W~~lll~~IGe~~  107 (165)
T PF01652_consen   28 PIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWIIRIKKKNKEQVDEIWENLLLAVIGEQF  107 (165)
T ss_dssp             EEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEEEEEETTCHHTHHHHHHHHHHHHHTTTS
T ss_pred             EEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEEEEEcCccchhHHHHHHHHHHHHhhccc
Confidence            58999999999999999999999999999999999999999999999999999999998   789999999999999999


Q ss_pred             CCC-CCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEc
Q 032034           79 DHG-DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFH  133 (148)
Q Consensus        79 ~~~-~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h  133 (148)
                      +.. ++||||++|+|+++++|+||+++.++++.+.+|++.++++|+++++  +.|++|
T Consensus       108 ~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~y~~H  165 (165)
T PF01652_consen  108 DEDGDEICGIVLSVRKNGIRISIWNKDSSDEDAQNRIGKKIKEILNLPPNTKIEYKSH  165 (165)
T ss_dssp             CCGGGGEEEEEEEEESSEEEEEEEESSTT-HHHHHHHHHHHHHHHTTTTTSEEEEEEH
T ss_pred             ccCCCcceEEEEEEecCCCEEEEecCCCCCHHHHHHHHHHHHHHhCcCCCCeEEEecC
Confidence            865 8999999999999999999999999888899999999999999874  788877

eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....

>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.9e-49  Score=298.70  Aligned_cols=136  Identities=37%  Similarity=0.665  Sum_probs=131.3

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHG   81 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~~~~W~~lll~~Ige~f~~~   81 (148)
                      +|++|.|||+||++|.|+++|+.|+..+++||||+||+|+|||++|.|||+|+|+++|..++++||+|||+++||||..+
T Consensus        58 ~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~aN~nGgkWiirlkK~vs~R~wE~LLlal~geqf~~~  137 (208)
T KOG1669|consen   58 SIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKANCNGGKWIIRLKKGVSQRYWENLLLALCGEQFKVG  137 (208)
T ss_pred             hheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcCCCCCCeEEEEehHHHHHHHHHHHHHHHHhhhhccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEccccc
Q 032034           82 DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDAK  137 (148)
Q Consensus        82 ~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h~~~~  137 (148)
                      ++|||+|+|+|.++++||||++++++.....+|.+.||.+|+||+.  ++|+.|+++.
T Consensus       138 e~icGaV~svr~nediiSiWnRna~dta~~~~irdtLk~~L~lp~~~vmeYK~H~~~L  195 (208)
T KOG1669|consen  138 EEICGAVGSVRFNEDIISIWNRNASDTADTGRIRDTLKRVLELPFNTVMEYKNHDDSL  195 (208)
T ss_pred             ccccceeEEEeccchhhhhhcCCCCcchhHHHHHHHHHHHhcCCcceEEEecchhhhh
Confidence            9999999999999999999999999999899999999999999986  7778888876

>PTZ00040 translation initiation factor E4; Provisional

Probab=100.00  E-value=2.7e-44  Score=286.98  Aligned_cols=122  Identities=30%  Similarity=0.529  Sum_probs=112.8

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCce---------------eeeecCCCccCCCCCCCCCCcEEEEEeCCC-----C
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGAD---------------FYCFKNKIEPKWEDPVCANGGKWTVIFPKG-----K   61 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~---------------~~lFk~gI~P~WED~~N~nGG~w~i~~~k~-----~   61 (148)
                      .|++|+|||+||++|+||++||+|+.+++               |||||+||+||||||+|++||+|++++++.     .
T Consensus        67 ~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~lFK~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~  146 (233)
T PTZ00040         67 PLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIFKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQ  146 (233)
T ss_pred             EEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeeeecCCCeECcCCCCcCCCCEEEEEeccccccccH
Confidence            58999999999999999999999999875               999999999999999999999999999653     2


Q ss_pred             cHHHHHHHHHHHhcCCCCCCCCeeeEEE----EecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 032034           62 SDTSWLYTLLAMIGEQFDHGDEICGAVV----NVRARQEKISLWTKNASNEAAQMSIGKQWKELLD  123 (148)
Q Consensus        62 ~~~~W~~lll~~Ige~f~~~~~I~Giv~----s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~  123 (148)
                      .|++|++|||++|||+|+..++||||++    |+|++.++|+||++++++++.+.+|++.++++|.
T Consensus       147 ~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~~~d~~~~~~i~~~i~~~l~  212 (233)
T PTZ00040        147 IDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTNLGDQSDRNQLMKEIETCMA  212 (233)
T ss_pred             HHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            4999999999999999998899999996    6778889999999999999988999999999773

>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-41  Score=261.25  Aligned_cols=138  Identities=36%  Similarity=0.657  Sum_probs=127.6

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCc---HHHHHHHHHHHhcCCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQF   78 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~---~~~W~~lll~~Ige~f   78 (148)
                      .|++|+|||+||++.++|+.++.||..++|++||+||+|+|||++|+|||+|.+.++...+   +++|+.+++++|||++
T Consensus        64 ~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~~Ggkws~qlk~~g~d~~dElwl~tlla~igeT~  143 (217)
T COG5053          64 SIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMNGGKWSFQLKGKGCDRLDELWLRTLLAAIGETL  143 (217)
T ss_pred             hheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccCCCCeEEEEcccccchhHHHHHHHHHHHHHhhcc
Confidence            5899999999999999999999999999999999999999999999999999999998665   7899999999999999


Q ss_pred             C-CCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEcccccCC
Q 032034           79 D-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDAKHD  139 (148)
Q Consensus        79 ~-~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h~~~~~~  139 (148)
                      + .+.+|||+|++.|++.+||+||++++.+.+.+.+|+.++|.+|+|+..  ++|+.|.-++.+
T Consensus       144 Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dvl~~ig~efk~vl~ls~~~tle~k~heSsk~g  207 (217)
T COG5053         144 DPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVLGAIGNEFKQVLELSDVETLEYKAHESSKLG  207 (217)
T ss_pred             CCCCCeeccEEEEeecCceEEEEEecCCCcHHHHHHHHHHHHhcccccceeEEEeccccccccc
Confidence            7 467899999999999999999999999999999999999999999864  777778644433

>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins

Probab=96.40  E-value=0.034  Score=45.25  Aligned_cols=79  Identities=20%  Similarity=0.342  Sum_probs=55.8

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCeeeEEEEec------CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 032034           50 GGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR------ARQEKISLWTKNASNEAAQMSIGKQWKELLD  123 (148)
Q Consensus        50 GG~w~i~~~k~~~~~~W~~lll~~Ige~f~~~~~I~Giv~s~R------~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~  123 (148)
                      -|+|+|-++...+|++|..+.-+.+.+++.     +++-|+.+      .+...|.|.+.|..|.+.+.++.+.|++. |
T Consensus       150 sGKWmlf~~~~~vd~~W~~Va~at~~g~Lg-----~~AKVst~~~~~~~~~~~vIcVYT~Df~D~~DV~RVl~~Lr~~-g  223 (243)
T PF08939_consen  150 SGKWMLFPPPDRVDEIWSKVAKATADGELG-----ISAKVSTGPEDDDGDDRRVICVYTPDFRDREDVMRVLRRLREL-G  223 (243)
T ss_dssp             -EEEEEEE-TTHHHHHHHHHHHHHHTTSS------SEEEE-----B-TTSS-EEEEEEES-TT-HHHHHHHHHHHHHT-T
T ss_pred             cceeEEEcCHHHHHHHHHHHHHHHHcCCce-----eeEEecccCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHc-C
Confidence            799999999998899999999999988773     34555541      12367999999999998899999999766 7


Q ss_pred             CCC----ceeEEEcc
Q 032034          124 YSD----TIGFIFHE  134 (148)
Q Consensus       124 l~~----~i~~~~h~  134 (148)
                      +-.    .|.|++-.
T Consensus       224 l~~~~~~~i~YK~D~  238 (243)
T PF08939_consen  224 LVDPDGRPIYYKPDA  238 (243)
T ss_dssp             --S-----EEEEEHH
T ss_pred             CccccccceeecCch
Confidence            655    58888743

; PDB: 1ZTP_B 2Q4K_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
2wmc_A	178	Crystal Structure Of Eukaryotic Initiation Factor 4		2e-65
2idr_A	177	Crystal Structure Of Translation Initiation Factor		1e-59
2idv_A	177	Crystal Structure Of Wheat C113s Mutant Eif4e Bound		1e-58
4axg_A	248	Structure Of Eif4e-Cup Complex Length = 248		4e-27
4dt6_A	240	Co-Crystal Structure Of Eif4e With Inhibitor Length		2e-24
3m93_A	189	Complex Crystal Structure Of Ascaris Suum Eif4e-3 W		2e-24
1ipb_A	217	Crystal Structure Of Eukaryotic Initiation Factor 4		3e-24
2w97_B	217	Crystal Structure Of Eif4e Bound To Glycerol And Ei		3e-24
1wkw_A	191	Crystal Structure Of The Ternary Complex Of Eif4e-M		3e-24
1ej1_A	190	Cocrystal Structure Of The Messenger Rna 5' Cap-Bin		4e-24
2jgb_A	195	Structure Of Human Eif4e Homologous Protein 4ehp Wi		1e-21
3hxg_A	189	Crystal Structure Of Schistsome Eif4e Complexed Wit		2e-19
1ap8_A	213	Translation Initiation Factor Eif4e In Complex With		2e-18
1rf8_A	213	Solution Structure Of The Yeast Translation Initiat		3e-17
4b6v_A	207	The Third Member Of The Eif4e Family Represses Gene		6e-13

>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From Pisum Sativum Length = 178

Iteration: 1
 Score =  244 bits (622), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 113/147 (76%), Positives = 129/147 (87%), Gaps = 1/147 (0%)
Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    +S+YNNIHHP KLAVGADFYCFK+KIEPKWEDP+CANGGKWT  +PKGKS
Sbjct: 32  IYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKS 91
Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DTSWLYTLLAMIGEQFDHGDEICGAVVNVR R EKIS+WTKNASNEAAQ+SIGKQWKE L
Sbjct: 92  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFL 151
Query: 123 DYSDTIGFIFHEDA-KHDNRSKNRYTT 148
           DY++T+GFIFH+DA K D  +KN+Y  
Sbjct: 152 DYNETMGFIFHDDARKLDRNAKNKYVV 178

>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e From Wheat Length = 177

Iteration: 1
 Score =  224 bits (572), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 105/147 (71%), Positives = 124/147 (84%), Gaps = 1/147 (0%)
Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    + LYNNIH+PSKL VGADF+CFKNKIEPKWEDP+CANGGKWT+   +GKS
Sbjct: 31  IHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKS 90
Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DT WL+TLLAMIGEQFD GDEICGAVV+VR +QE++++WTKNA+NEAAQ+SIGKQWKE L
Sbjct: 91  DTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFL 150
Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYTT 148
           DY D+IGFI HEDAK  D   KNRYT 
Sbjct: 151 DYKDSIGFIVHEDAKRSDKGPKNRYTV 177

>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7- Methyl-Gdp Length = 177

Iteration: 1
 Score =  221 bits (562), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 123/147 (83%), Gaps = 1/147 (0%)
Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F +    + LYNNIH+PSKL VGADF+CFKNKIEPKWEDP+ ANGGKWT+   +GKS
Sbjct: 31  IHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPISANGGKWTISCGRGKS 90
Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
           DT WL+TLLAMIGEQFD GDEICGAVV+VR +QE++++WTKNA+NEAAQ+SIGKQWKE L
Sbjct: 91  DTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFL 150
Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYTT 148
           DY D+IGFI HEDAK  D   KNRYT 
Sbjct: 151 DYKDSIGFIVHEDAKRSDKGPKNRYTV 177

>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex Length = 248

Iteration: 1
 Score =  116 bits (291), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 89/152 (58%), Gaps = 7/152 (4%)
Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + SF +    +SLYN+I  PS++ +G+D+  FK  I P WED     GG+W +   K   
Sbjct: 96  ITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSK 155
Query: 63  ---DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWK 119
              D  WL  LL +IGE FDH D+ICGAV+N+R +  KIS+WT + +NE A + IG + +
Sbjct: 156 TDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLR 215
Query: 120 ELLDY--SDTIGFIFHEDA--KHDNRSKNRYT 147
           + L    ++++ +  H+D   K  +  K+ YT
Sbjct: 216 DALRLGRNNSLQYQLHKDTMVKQGSNVKSIYT 247

>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor Length = 240

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 2   VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK 61
           ++  F +    ++LYN+I   S L  G D+  FK+ IEP WED     GG+W +   K +
Sbjct: 85  LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQ 144
Query: 62  S----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
                D  WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  A   IG+
Sbjct: 145 RRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGR 204
Query: 117 QWKELLDYSD--TIGFIFHED--AKHDNRSKNRYTT 148
            +KE L       IG+  H D   K  + +KNR+  
Sbjct: 205 VYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 240

>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g Cap Length = 189

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 84/138 (60%), Gaps = 7/138 (5%)
Query: 6   FHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS--- 62
           F +    +SLYN+I   S L  G+D+Y FK  I+P WED     GG+W V+  K K    
Sbjct: 32  FDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQL 91
Query: 63  -DTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKE 120
            D  WL  L+A+IGEQF D+G+ ICGAVVNVR + +K+SLWT+++  +   + IG+  K 
Sbjct: 92  LDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQILKA 151
Query: 121 LLDYSDT--IGFIFHEDA 136
            L+  DT  I +  H+D+
Sbjct: 152 KLEIPDTEPIRYEVHKDS 169

>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e Complexed With 7-methyl Gpppa Length = 217

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 2   VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK 61
           ++  F +    ++LYN+I   S L  G D+  FK+ IEP WED     GG+W +   K +
Sbjct: 62  LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQ 121
Query: 62  S----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
                D  WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  A   IG+
Sbjct: 122 RRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGR 181
Query: 117 QWKELLDYSD--TIGFIFHED--AKHDNRSKNRYTT 148
            +KE L       IG+  H D   K  + +KNR+  
Sbjct: 182 VYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 217

>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1 Peptide Length = 217

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 2   VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK 61
           ++  F +    ++LYN+I   S L  G D+  FK+ IEP WED     GG+W +   K +
Sbjct: 62  LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQ 121
Query: 62  S----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
                D  WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  A   IG+
Sbjct: 122 RRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGR 181
Query: 117 QWKELLDYSD--TIGFIFHED--AKHDNRSKNRYTT 148
            +KE L       IG+  H D   K  + +KNR+  
Sbjct: 182 VYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 217

>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa- 4ebp1 Peptide Length = 191

Iteration: 1
 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 2   VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK 61
           ++  F +    ++LYN+I   S L  G D+  FK+ IEP WED     GG+W +   K +
Sbjct: 36  LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQ 95
Query: 62  S----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
                D  WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  A   IG+
Sbjct: 96  RRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGR 155
Query: 117 QWKELLDYSD--TIGFIFHED--AKHDNRSKNRYTT 148
            +KE L       IG+  H D   K  + +KNR+  
Sbjct: 156 VYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 191

>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding Protein (Eif4e) Bound To 7-Methyl-Gdp Length = 190

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 2   VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK 61
           ++  F +    ++LYN+I   S L  G D+  FK+ IEP WED     GG+W +   K +
Sbjct: 35  LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQ 94
Query: 62  S----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
                D  WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  A   IG+
Sbjct: 95  RRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGR 154
Query: 117 QWKELLDYSD--TIGFIFHED--AKHDNRSKNRYTT 148
            +KE L       IG+  H D   K  + +KNR+  
Sbjct: 155 VYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 190

>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With M7gtp Length = 195

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 72/121 (59%)
Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + +F S    +  Y+++  P  L   +DF+ FK  I+P WED    NGGKW +   KG +
Sbjct: 46  IGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA 105
Query: 63  DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
              W   +LAM+GEQF  G+EICGAVV+VR +++ IS+W K AS++A    I    + +L
Sbjct: 106 SRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVL 165
Query: 123 D 123
           +
Sbjct: 166 N 166

>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With M7gpppa And 4e-Bp Length = 189

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTV-IFPKGK 61
           + +F +    +S+  +   P ++  G D Y FK+ I PKWEDP   NGG+W + +  +  
Sbjct: 36  VATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQD 95
Query: 62  SDTSWLYTLLAMIGEQFDHGDE---ICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQW 118
            D  W   L+ +IG  +D  +E   ICGAV   R+R  K+S+W  + + E   +SIG++ 
Sbjct: 96  VDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRI 155
Query: 119 KELLDYSDTIGFIFHEDAKHDNRSKNR 145
           KE L+  DTI F        D RS+ R
Sbjct: 156 KERLELEDTIYF----QPVSDQRSQTR 178

>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp, Nmr, 20 Structures Length = 213

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 6/128 (4%)
Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + SF +    +++  NI  P +L + +D++ F+N + P+WED   A GGKW+    +GK 
Sbjct: 65  VTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQL-RGKG 123
Query: 63  ---DTSWLYTLLAMIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQW 118
              D  WL TLLA+IGE  D  D +I G V+++R    K +LWTK+   E   + IG ++
Sbjct: 124 ADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKEPL-LRIGGKF 182
Query: 119 KELLDYSD 126
           K++L  +D
Sbjct: 183 KQVLKLTD 190

>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation Factor Eif4e In Complex With M7gdp And Eif4gi Residues 393 To 490 Length = 213

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTV-IFPKGK 61
           + SF +    +++  NI  P +L + +D++ F+N + P+WED   A GGKW+  +  KG 
Sbjct: 65  VTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLCGKGA 124
Query: 62  S-DTSWLYTLLAMIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWK 119
             D  WL TLLA+IGE  D  D +I G V+++R    K +LWTK    E   + IG ++K
Sbjct: 125 DIDELWLCTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKCEDKEPL-LRIGGKFK 183
Query: 120 ELLDYSD 126
           ++L  +D
Sbjct: 184 QVLKLTD 190

>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene Expression Via A Novel Mode Of Recognition Of The Methyl-7 Guanosine Cap Moiety Length = 207

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 13  FSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLA 72
           +S+YNNI   + L +   ++  + +  P WE+   A GG W +  PK  + T W   LLA
Sbjct: 69  WSVYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLA 128
Query: 73  MIGEQFDH----GDEICGAVVNVRARQEKISLWTKNAS 106
            IGEQF       DEI G  V+VR R++ + +W  NAS
Sbjct: 129 TIGEQFTDCAAADDEIIGVSVSVRDREDVVQVWNVNAS 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	4e-54
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	1e-43
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	2e-42
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	1e-41
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	1e-41
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	5e-41
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	4e-37

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177

 Score =  167 bits (424), Expect = 4e-54
 Identities = 104/144 (72%), Positives = 124/144 (86%), Gaps = 1/144 (0%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDT 64
           +F +    + LYNNIH+PSKL VGADF+CFKNKIEPKWEDP+CANGGKWT+   +GKSDT
Sbjct: 33  TFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDT 92

Query: 65  SWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 124
            WL+TLLAMIGEQFD GDEICGAVV+VR +QE++++WTKNA+NEAAQ+SIGKQWKE LDY
Sbjct: 93  FWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDY 152

Query: 125 SDTIGFIFHEDAKHDNRS-KNRYT 147
            D+IGFI HEDAK  ++  KNRYT
Sbjct: 153 KDSIGFIVHEDAKRSDKGPKNRYT 176

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189

 Score =  141 bits (356), Expect = 1e-43
 Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFP-KGK 61
           + +F +    +S+  +   P ++  G D Y FK+ I PKWEDP   NGG+W +    +  
Sbjct: 36  VATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQD 95

Query: 62  SDTSWLYTLLAMIGEQFD---HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQW 118
            D  W   L+ +IG  +D      +ICGAV   R+R  K+S+W  + + E   +SIG++ 
Sbjct: 96  VDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRI 155

Query: 119 KELLDYSDTIGFIFHEDA----KHDNRSKNRYT 147
           KE L+  DTI F    D     +  +    +Y 
Sbjct: 156 KERLELEDTIYFQPVSDQRSQTRGSDICTGKYE 188

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190

 Score =  137 bits (347), Expect = 2e-42
 Identities = 61/154 (39%), Positives = 85/154 (55%), Gaps = 9/154 (5%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           +  F +    ++LYN+I   S L  G D+  FK+ IEP WED     GG+W +   K + 
Sbjct: 36  ISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQR 95

Query: 63  ----DTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQ 117
               D  WL TLL +IGE F D+ D++CGAVVNVRA+ +KI++WT    N  A   IG+ 
Sbjct: 96  RSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRV 155

Query: 118 WKELLDY--SDTIGFIFHED--AKHDNRSKNRYT 147
           +KE L       IG+  H D   K  + +KNR+ 
Sbjct: 156 YKERLGLPPKIVIGYQSHADTATKSGSTTKNRFV 189

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217

 Score =  137 bits (345), Expect = 1e-41
 Identities = 61/154 (39%), Positives = 85/154 (55%), Gaps = 9/154 (5%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           +  F +    ++LYN+I   S L  G D+  FK+ IEP WED     GG+W +   K + 
Sbjct: 63  ISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQR 122

Query: 63  ----DTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQ 117
               D  WL TLL +IGE F D+ D++CGAVVNVRA+ +KI++WT    N  A   IG+ 
Sbjct: 123 RSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRV 182

Query: 118 WKELLDY--SDTIGFIFHED--AKHDNRSKNRYT 147
           +KE L       IG+  H D   K  + +KNR+ 
Sbjct: 183 YKERLGLPPKIVIGYQSHADTATKSGSTTKNRFV 216

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195

 Score =  136 bits (343), Expect = 1e-41
 Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 4/147 (2%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDT 64
           +F S    +  Y+++  P  L   +DF+ FK  I+P WED    NGGKW +   KG +  
Sbjct: 48  TFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASR 107

Query: 65  SWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY 124
            W   +LAM+GEQF  G+EICGAVV+VR +++ IS+W K AS++A    I    + +L+ 
Sbjct: 108 CWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNL 167

Query: 125 SD--TIGFIFHED--AKHDNRSKNRYT 147
                + +  H D           R  
Sbjct: 168 PPNTIMEYKTHTDSIKMPGRLGPQRLL 194

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189

 Score =  134 bits (339), Expect = 5e-41
 Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 9/155 (5%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           +  F +    +SLYN+I   S L  G+D+Y FK  I+P WED     GG+W V+  K K 
Sbjct: 29  VAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWLVVVDKQKR 88

Query: 63  ----DTSWLYTLLAMIGEQ-FDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQ 117
               D  WL  L+A+IGEQ  D+G+ ICGAVVNVR + +K+SLWT+++  +   + IG+ 
Sbjct: 89  AQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQI 148

Query: 118 WKELLDY--SDTIGFIFHEDAKHDNRS--KNRYTT 148
            K  L+   ++ I +  H+D+     S  K R   
Sbjct: 149 LKAKLEIPDTEPIRYEVHKDSSVRTGSMVKPRIVI 183

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213

 Score =  125 bits (314), Expect = 4e-37
 Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 7/150 (4%)

Query: 3   LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
           + SF +    +++  NI  P +L + +D++ F+N + P+WED   A GGKW+       +
Sbjct: 65  VTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGA 124

Query: 63  DTS--WLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWK 119
           D    WL TLLA+IGE  D    +I G V+++R    K +LWTK+   E   + IG ++K
Sbjct: 125 DIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKE-PLLRIGGKFK 183

Query: 120 ELLDYSD--TIGFIFHEDAKHDNRSKNRYT 147
           ++L  +D   + F  H  A +    +   T
Sbjct: 184 QVLKLTDDGHLEFFPHSSA-NGRHPQPSIT 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	100.0
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	100.0
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	100.0
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	100.0
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	100.0
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	100.0
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	100.0
4axg_A	248	Eukaryotic translation initiation factor 4E; 4E-BP	100.0
1ztp_A	251	Basophilic leukemia expressed protein BLES03; HS.4	99.61

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*

Probab=100.00  E-value=1.8e-56  Score=344.32  Aligned_cols=147  Identities=71%  Similarity=1.228  Sum_probs=140.9

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHG   81 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~~~~W~~lll~~Ige~f~~~   81 (148)
                      .|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+|+++++|+..|++|++|||++|||+|+.+
T Consensus        30 ~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~w~i~~~k~~~d~~W~~lll~~IGe~f~~~  109 (177)
T 2idr_A           30 PIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFG  109 (177)
T ss_dssp             CEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEEEEEEECTTCCHHHHHHHHHHHHTTCSTTG
T ss_pred             EEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCEEEEEECcCcHHHHHHHHHHHHhcCcCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999889999999999999999988


Q ss_pred             CCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCceeEEEccccc-CCCCCCceeEC
Q 032034           82 DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAK-HDNRSKNRYTT  148 (148)
Q Consensus        82 ~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~i~~~~h~~~~-~~~~~~~~~~~  148 (148)
                      ++|||||+|+|+++++|+||++++++++.+..|++.++++|+++..+.|++|+++. .++++|++|+|
T Consensus       110 d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~~~y~~H~d~~~~~~~~k~~~~~  177 (177)
T 2idr_A          110 DEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHEDAKRSDKGPKNRYTV  177 (177)
T ss_dssp             GGEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCSCCEEEEGGGGGSCSSSCCCSEEC
T ss_pred             CceEEEEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhcCCCCccceEC
Confidence            89999999999999999999999999999999999999999998889999999988 45688999986

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*

Probab=100.00  E-value=1.8e-55  Score=341.84  Aligned_cols=147  Identities=41%  Similarity=0.754  Sum_probs=136.5

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCC----cHHHHHHHHHHHhcCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK----SDTSWLYTLLAMIGEQ   77 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~----~~~~W~~lll~~Ige~   77 (148)
                      .|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||+|++++++..    .|++|++|||++|||+
T Consensus        28 ~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GGkw~i~~~k~~~~~~~d~~W~~lll~~IGe~  107 (189)
T 3m94_A           28 QVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQ  107 (189)
T ss_dssp             EEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCEEEEEEECTTTHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCCEEEEEecCccccchHHHHHHHHHHHHhCCc
Confidence            589999999999999999999999999999999999999999999999999999998864    3999999999999999


Q ss_pred             CC-CCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEccccc--CCCCCCceeEC
Q 032034           78 FD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDAK--HDNRSKNRYTT  148 (148)
Q Consensus        78 f~-~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h~~~~--~~~~~~~~~~~  148 (148)
                      |+ .+++|||||+|+|.++++|+||++++++++.+..|++.++++|++++.  ++|++|.+++  ++|.+|++|+|
T Consensus       108 f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~Ig~~lk~~L~l~~~~~i~y~~H~d~~~~~~s~~k~~~~v  183 (189)
T 3m94_A          108 FEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEPIRYEVHKDSSVRTGSMVKPRIVI  183 (189)
T ss_dssp             SGGGGGGEEEEEEECCSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCTTSCEEEEECC-----CCSCCCCSEEE
T ss_pred             ccccCCcCceEEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHhCcCCCCEEEEEEchHhhhccCCCCceEEEE
Confidence            95 678999999999999999999999999999999999999999999864  8999999987  78889999985

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*

Probab=100.00  E-value=2e-55  Score=341.78  Aligned_cols=147  Identities=41%  Similarity=0.776  Sum_probs=134.7

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCc----HHHHHHHHHHHhcCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQ   77 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~----~~~W~~lll~~Ige~   77 (148)
                      .|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+|++++++...    |++|++|||++|||+
T Consensus        35 ~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~  114 (190)
T 1l8b_A           35 LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGES  114 (190)
T ss_dssp             EEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTT
T ss_pred             EEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCCCCEEEEEecCccCcchHHHHHHHHHHHHhhcc
Confidence            5899999999999999999999999999999999999999999999999999999988654    999999999999999


Q ss_pred             C-CCCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCC--ceeEEEccccc--CCCCCCceeEC
Q 032034           78 F-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDAK--HDNRSKNRYTT  148 (148)
Q Consensus        78 f-~~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~--~i~~~~h~~~~--~~~~~~~~~~~  148 (148)
                      | +.+++|||||+|+|+++++|+||++++++++.+..|++.++++|++++  .++|++|++++  ++|.++++|+|
T Consensus       115 f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l~~~~~~~y~~H~d~~~~~~~~~~~~~~~  190 (190)
T 1l8b_A          115 FDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV  190 (190)
T ss_dssp             TGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHHHTCCTTSCCEEEEHHHHHTC-----CCSEEC
T ss_pred             cccCCCceeeEEEEeecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEcHHHHhccCCCCceeeeC
Confidence            9 567899999999999999999999999999999999999999999976  48999999987  56788999986

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*

Probab=100.00  E-value=9.7e-55  Score=344.03  Aligned_cols=147  Identities=41%  Similarity=0.777  Sum_probs=139.1

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCc----HHHHHHHHHHHhcCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQ   77 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~----~~~W~~lll~~Ige~   77 (148)
                      .|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+|++++++...    |++|++|||++|||+
T Consensus        62 ~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~  141 (217)
T 1ipb_A           62 LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGES  141 (217)
T ss_dssp             EEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCEEEEEECCTTHHHHTHHHHHHHHHHHHHTTT
T ss_pred             EEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCCCCEEEEEeccccCcchHHHHHHHHHHHHhhcc
Confidence            5899999999999999999999999999999999999999999999999999999998754    999999999999999


Q ss_pred             C-CCCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCC--ceeEEEccccc--CCCCCCceeEC
Q 032034           78 F-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDAK--HDNRSKNRYTT  148 (148)
Q Consensus        78 f-~~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~--~i~~~~h~~~~--~~~~~~~~~~~  148 (148)
                      | +.+++|||||+|+|+++++|+||++++++++.+..|++.++++|++++  .++|++|.++.  ++|.++++|+|
T Consensus       142 f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l~~~~~i~y~~H~d~~~~~~s~~~~~~~~  217 (217)
T 1ipb_A          142 FDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV  217 (217)
T ss_dssp             TGGGGGGEEEEEEECCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHTCCTTCCCEEEEGGGCCCSTTCCCCCSEEC
T ss_pred             ccccCCccceEEEEeecCCcEEEEECCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEchHhhhccCCCCceeeeC
Confidence            9 667899999999999999999999999999989999999999999987  58999999987  66788999986

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*

Probab=100.00  E-value=4.1e-55  Score=339.86  Aligned_cols=147  Identities=30%  Similarity=0.615  Sum_probs=137.9

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCC-CcHHHHHHHHHHHhcCCC-C
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKG-KSDTSWLYTLLAMIGEQF-D   79 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~-~~~~~W~~lll~~Ige~f-~   79 (148)
                      .|++|+|||+||++|+||++|++|+.++||||||+||+||||||+|++||+|+++++++ ..|++|++|+|++|||+| +
T Consensus        35 ~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N~~GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~  114 (189)
T 3hxi_A           35 KVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDT  114 (189)
T ss_dssp             EEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHHHTCEEEEEECCTTSCHHHHHHHHHHHHHTTCCSS
T ss_pred             EEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCCCCCcEEEEEecCCCcHHHHHHHHHHHHhcCcccc
Confidence            58999999999999999999999999999999999999999999999999999999997 479999999999999999 5


Q ss_pred             CCCC--eeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEccccc--CCCCCCceeEC
Q 032034           80 HGDE--ICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDAK--HDNRSKNRYTT  148 (148)
Q Consensus        80 ~~~~--I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h~~~~--~~~~~~~~~~~  148 (148)
                      .+++  |||||+|+|+++++|+||++++++++.+.+|++.++++|+++++  ++|++|+++.  ++|.++++|+|
T Consensus       115 ~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~~~i~y~~H~d~~~~~~s~~~~~~~~  189 (189)
T 3hxi_A          115 DEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELEDTIYFQPVSDQRSQTRGSDICTGKYEI  189 (189)
T ss_dssp             HHHHHHEEEEEEECCTTCCEEEEEESCSCCHHHHHHHHHHHHHHHTCCSCCEEEEHHHHHHCCTTCC-CCCSEEC
T ss_pred             cCCCceeeeEEEEeccCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCcCCCCeEEEEEchhhhhcCCCCCCceEeC
Confidence            5667  99999999999999999999999999999999999999999976  8999999987  67788999986

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A

Probab=100.00  E-value=8.3e-54  Score=333.89  Aligned_cols=136  Identities=37%  Similarity=0.696  Sum_probs=131.6

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHG   81 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~~~~W~~lll~~Ige~f~~~   81 (148)
                      .|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||+|+++++++..|++|++|||++|||+|+.+
T Consensus        45 ~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~  124 (195)
T 2jgb_A           45 QIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVG  124 (195)
T ss_dssp             EEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTTTTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCT
T ss_pred             EEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCCCCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999899999999999999999988


Q ss_pred             CCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEccccc
Q 032034           82 DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDAK  137 (148)
Q Consensus        82 ~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h~~~~  137 (148)
                      ++|||||+|+|.++++|+||++++++++.+..|++.++++|++++.  ++|++|+++.
T Consensus       125 d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l~~~~~~~y~~H~d~~  182 (195)
T 2jgb_A          125 EEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSI  182 (195)
T ss_dssp             TCEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHCCCCTTCCEEEEEHHHHH
T ss_pred             CceeeeEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEchHhh
Confidence            9999999999999999999999999999999999999999999764  8999999987

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*

Probab=100.00  E-value=3.8e-53  Score=334.05  Aligned_cols=145  Identities=33%  Similarity=0.664  Sum_probs=135.3

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCC--CCcHHHHHHHHHHHhcCCCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPK--GKSDTSWLYTLLAMIGEQFD   79 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k--~~~~~~W~~lll~~Ige~f~   79 (148)
                      .|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+|+++++.  ...|++|++|||++|||+|+
T Consensus        64 ~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~  143 (213)
T 1ap8_A           64 PVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETID  143 (213)
T ss_dssp             EEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTTTSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTC
T ss_pred             EEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCCCCCCEEEEEECCCcchHHHHHHHHHHHHhcCccc
Confidence            5899999999999999999999999999999999999999999999999999999842  35699999999999999998


Q ss_pred             CCC-CeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCC--ceeEEEcccccCCCCCCceeEC
Q 032034           80 HGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDAKHDNRSKNRYTT  148 (148)
Q Consensus        80 ~~~-~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~--~i~~~~h~~~~~~~~~~~~~~~  148 (148)
                      ..+ +|||||+|+|+++++|+||++++ +++.+..|++.|+++|++++  .+.|++|.++.. +.+|++|+|
T Consensus       144 ~~~deIcGvvvsvR~~~~~IsIW~~~~-~~~~~~~Ig~~lk~~L~l~~~~~i~y~~H~d~~~-~~~k~~~~~  213 (213)
T 1ap8_A          144 EDDSQINGVVLSIRKGGNKFALWTKSE-DKEPLLRIGGKFKQVLKLTDDGHLEFFPHSSANG-RHPQPSITL  213 (213)
T ss_dssp             SSTTTEEEEEEECCTTCEEEEEEESSS-CHHHHHHHHHHHHHHTTCCSSCCCEEECGGGGGC-CCSCCSEEC
T ss_pred             CCCCcEeEEEEEeecCCcEEEEEcCCC-CHHHHHHHHHHHHHHhCCCCCCeEEEEEchhhhc-ccCccceEC
Confidence            666 89999999999999999999999 88888999999999999964  599999999886 888999986

>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}

Probab=100.00  E-value=5.9e-52  Score=333.72  Aligned_cols=147  Identities=39%  Similarity=0.808  Sum_probs=137.7

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCc---HHHHHHHHHHHhcCCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQF   78 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~---~~~W~~lll~~Ige~f   78 (148)
                      .|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+|||+|++++++...   |++|++|+|++|||+|
T Consensus        95 ~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~N~~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~  174 (248)
T 4axg_A           95 EITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAF  174 (248)
T ss_dssp             EEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTTTTTCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             EEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCccCCCccEEEEEecccchhHHHHHHHHHHHHHHhCcC
Confidence            4899999999999999999999999999999999999999999999999999999988664   7899999999999999


Q ss_pred             CCCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCC--ceeEEEccccc--CCCCCCceeEC
Q 032034           79 DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDAK--HDNRSKNRYTT  148 (148)
Q Consensus        79 ~~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~--~i~~~~h~~~~--~~~~~~~~~~~  148 (148)
                      +.+++|||||+|+|+++++|+||++++++++.+..|++.++++|+++.  .+.|+.|.++.  .+|.+|++|+|
T Consensus       175 ~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~~~~~~I~~~lk~~L~l~~~~~i~yk~H~ds~~~~~s~~k~~y~v  248 (248)
T 4axg_A          175 DHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL  248 (248)
T ss_dssp             SCGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHHTTCCTTSCEEEEETGGGCCCC--CCCCSEEC
T ss_pred             CCCCceeceEEEecCCCCEEEEeCCCCcCHHHHHHHHHHHHHHhCCCCCCeEEEeehhhhhhccCCCCceeEeC
Confidence            988899999999999999999999999999999999999999999965  48999999986  78899999986

>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A

Probab=99.61  E-value=1.8e-15  Score=121.01  Aligned_cols=96  Identities=16%  Similarity=0.194  Sum_probs=86.3

Q ss_pred             CCCCCCcEEEEEeCC-CCcHHHHHHHHHHHhcCCCCCCCCeeeEEEEecCC---CcEEEEEcCCCCCHHHHHHHHHHHHH
Q 032034           45 PVCANGGKWTVIFPK-GKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRAR---QEKISLWTKNASNEAAQMSIGKQWKE  120 (148)
Q Consensus        45 ~~N~nGG~w~i~~~k-~~~~~~W~~lll~~Ige~f~~~~~I~Giv~s~R~~---~~~IsIW~~~~~~~~~~~~I~~~~k~  120 (148)
                      +.|..||||+|.+++ ...|++|+++++++|+++      +||++|+.|..   +.+|+||++|..+.+.+.+|++.|++
T Consensus       121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~edV~RV~~~Lre  194 (251)
T 1ztp_A          121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRA  194 (251)
T ss_dssp             HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred             HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence            468999999999988 667999999999999765      59999999986   79999999999999999999999999


Q ss_pred             hcCCCCceeEEEcccccCCCCCCceeE
Q 032034          121 LLDYSDTIGFIFHEDAKHDNRSKNRYT  147 (148)
Q Consensus       121 ~L~l~~~i~~~~h~~~~~~~~~~~~~~  147 (148)
                       |++...+.|++|.++..++..+|+|.
T Consensus       195 -LGl~~~I~YK~D~~T~~Giy~~n~~~  220 (251)
T 1ztp_A          195 -AGIKCLLTYKPDVYTYLGIYRANRWH  220 (251)
T ss_dssp             -TTCCSCEEEEEHHHHHTTCCSSCSSC
T ss_pred             -cCCCcceeeccchHhhcCCccCCcce
Confidence             99987899999999887777777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1l8ba_	182	d.86.1.1 (A:) Translation initiation factor eIF4e	2e-43
d1ap8a_	213	d.86.1.1 (A:) Translation initiation factor eIF4e	3e-35

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  139 bits (351), Expect = 2e-43
 Identities = 61/152 (40%), Positives = 84/152 (55%), Gaps = 9/152 (5%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS-- 62
            F +    ++LYN+I   S L  G D+  FK+ IEP WED     GG+W +   K +   
Sbjct: 30  KFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRS 89

Query: 63  --DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWK 119
             D  WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  A   IG+ +K
Sbjct: 90  DLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYK 149

Query: 120 ELLDY--SDTIGFIFHED--AKHDNRSKNRYT 147
           E L       IG+  H D   K  + +KNR+ 
Sbjct: 150 ERLGLPPKIVIGYQSHADTATKSGSTTKNRFV 181

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (299), Expect = 3e-35
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 7/148 (4%)

Query: 5   SFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS-- 62
           SF +    +++  NI  P +L + +D++ F+N + P+WED   A GGKW+       +  
Sbjct: 67  SFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADI 126

Query: 63  DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKEL 121
           D  WL TLLA+IGE  D    +I G V+++R    K +LWTK+   E   + IG ++K++
Sbjct: 127 DELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKE-PLLRIGGKFKQV 185

Query: 122 LDYSD--TIGFIFHEDAKHDNRSKNRYT 147
           L  +D   + F  H  A +    +   T
Sbjct: 186 LKLTDDGHLEFFPHSSA-NGRHPQPSIT 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1l8ba_	182	Translation initiation factor eIF4e {Mouse (Mus mu	100.0
d1ap8a_	213	Translation initiation factor eIF4e {Baker's yeast	100.0
d1ztpa1	234	Basophilic leukemia expressed protein BLES03 {Huma	95.78

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-50  Score=307.39  Aligned_cols=147  Identities=41%  Similarity=0.773  Sum_probs=132.3

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCC----CCcHHHHHHHHHHHhcCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPK----GKSDTSWLYTLLAMIGEQ   77 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k----~~~~~~W~~lll~~Ige~   77 (148)
                      .|++|+|||+||++|++|++|++|+.+++|+|||+||+|+||||+|+|||+|++++++    +..+++|++|++++|||+
T Consensus        27 ~i~~f~tvE~Fw~~~~~i~~~~~l~~~~~~~lFk~gI~P~WED~~N~~GG~~~~~i~~~~~~~~~~~~W~~lll~~IGe~  106 (182)
T d1l8ba_          27 LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGES  106 (182)
T ss_dssp             EEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTT
T ss_pred             EEEEEcCHHHHHHHHHcCCChHHCCccceEEEEecCccCCCCCcccCCCCEEEEEECcccccchHHHHHHHHHHHHHhcc
Confidence            5899999999999999999999999999999999999999999999999999999963    445999999999999999


Q ss_pred             CC-CCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCC--ceeEEEccccc--CCCCCCceeEC
Q 032034           78 FD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDAK--HDNRSKNRYTT  148 (148)
Q Consensus        78 f~-~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~--~i~~~~h~~~~--~~~~~~~~~~~  148 (148)
                      |+ ..++||||++|+|++..+|+||++++++++.+..|++.++++|++++  .+.|++|.++.  +++..|+||+|
T Consensus       107 ~~~~~~~I~Gi~~s~r~~~~~i~IW~~~~~~~~~~~~i~~~~~~~L~l~~~~~~~yk~H~d~~~~~~~~~k~~~~~  182 (182)
T d1l8ba_         107 FDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV  182 (182)
T ss_dssp             TGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHHHTCCTTSCCEEEEHHHHHTC-----CCSEEC
T ss_pred             cccCCCeeccEEEEecCCCcEEEEEeCCCccHHHHHHHHHHHHHHhCcCCCCeEEEEechhhhhccCCccccceeC
Confidence            95 45789999999999999999999999999989999999999999876  48999999865  78889999997

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-45  Score=288.39  Aligned_cols=144  Identities=33%  Similarity=0.654  Sum_probs=127.5

Q ss_pred             ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCC--cHHHHHHHHHHHhcCCCC
Q 032034            2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK--SDTSWLYTLLAMIGEQFD   79 (148)
Q Consensus         2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~--~~~~W~~lll~~Ige~f~   79 (148)
                      .|++|+|||+||++|++|++|++|+.+++|+|||+||+|+||||+|+|||+|+++++++.  .+++|++|+|++|||+|+
T Consensus        64 ~I~~f~TvE~Fw~~~~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~~~~~i~~~~~~~~~~W~~lll~~IGe~~~  143 (213)
T d1ap8a_          64 PVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETID  143 (213)
T ss_dssp             EEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTTTSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTC
T ss_pred             EEEEEccHHHHHHHHHhCCCHHHCCcccEEEEEecCccCCCCCcccCCCCEEEEEEccCCCcHHHHHHHHHHHHHhcccc
Confidence            589999999999999999999999999999999999999999999999999999998753  589999999999999996


Q ss_pred             C-CCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCC--ceeEEEcccccCCCCCCceeE
Q 032034           80 H-GDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDAKHDNRSKNRYT  147 (148)
Q Consensus        80 ~-~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~--~i~~~~h~~~~~~~~~~~~~~  147 (148)
                      . .+.||||++|+|++.++|+||+++.+ .+.+.+|++.|+++|++++  .+.|++|+++. ++..++++|
T Consensus       144 ~~~~~I~Gi~~s~r~~~~~i~IW~~~~~-~~~~~~I~~~lk~~L~l~~~~~i~y~~H~~~~-~~~~~~~~~  212 (213)
T d1ap8a_         144 EDDSQINGVVLSIRKGGNKFALWTKSED-KEPLLRIGGKFKQVLKLTDDGHLEFFPHSSAN-GRHPQPSIT  212 (213)
T ss_dssp             SSTTTEEEEEEECCTTCEEEEEEESSSC-HHHHHHHHHHHHHHTTCCSSCCCEEECGGGGG-CCCSCCSEE
T ss_pred             cCCCEEeeEEEEecCCceEEEEEccCCc-hhHHHHHHHHHHHHhCCCCCCeEEEEeccccc-ccCCCCCcc
Confidence            4 45799999999999999999999865 4445799999999999875  47899998865 444455554

>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein BLES03 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: BLES03-like
domain: Basophilic leukemia expressed protein BLES03
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.032  Score=42.01  Aligned_cols=82  Identities=17%  Similarity=0.281  Sum_probs=65.3

Q ss_pred             CCcEEEEEeCCC-CcHHHHHHHHHHHhcCCCCCCCCeeeEEEEecC---CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Q 032034           49 NGGKWTVIFPKG-KSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA---RQEKISLWTKNASNEAAQMSIGKQWKELLDY  124 (148)
Q Consensus        49 nGG~w~i~~~k~-~~~~~W~~lll~~Ige~f~~~~~I~Giv~s~R~---~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l  124 (148)
                      =-|+|+|-+... ..|.+|..+.-+.+-++|.    +  +-++.+.   +.-.|.|.++|..+...+.++...|+ .+|+
T Consensus       109 ~sGKWmif~~p~d~VD~~W~~VA~At~~G~Lg----~--AKVst~~~~~~~rlIcVYT~Df~D~~DV~RV~~~LR-~~G~  181 (234)
T d1ztpa1         109 LSGKWLMHLAPGFKLDHAWAGIARAVVEGRLQ----V--AKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIR-AAGI  181 (234)
T ss_dssp             CCEEEEEEECSSHHHHHHHHHHHHHHHHTSCS----E--EEECCBCSSSCCEEEEEEESCTTCHHHHHHHHHHHH-HTTC
T ss_pred             eeeeeEEecCchHHHHHHHHHHHHHHHcCcee----e--EEeccCCCCCCceEEEEECCCCCCHHHHHHHHHHHH-HcCC
Confidence            459999998665 6799999999999988873    2  3455543   24689999999999988899999996 6898


Q ss_pred             CCceeEEEccccc
Q 032034          125 SDTIGFIFHEDAK  137 (148)
Q Consensus       125 ~~~i~~~~h~~~~  137 (148)
                      ...|.|++-..+.
T Consensus       182 ~~~i~YK~DayTy  194 (234)
T d1ztpa1         182 KCLLTYKPDVYTY  194 (234)
T ss_dssp             CSCEEEEEHHHHH
T ss_pred             CceeeecchHHHH
Confidence            8779999865554