Citrus Sinensis ID: 032035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccccccccEcccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
masitaclpspllvqgrqklslfitlpklplsplnekQNCLAIVAKasgessesstsLTVFKSVQNvwdnssedrlglIGLGFAGIVALWASVNLitaidklpiipNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ
Flexible Loop (DISEMBL)
masitaclpspllvqGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKAsgessesstslTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKsvsdilgq
Low Complexity Region (SEG)
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIvakasgessesstsltvfksVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ
Disordered region (IsUnstruct)
*****ACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVA*************TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKS*******
Disordered Region (DISOPRED)
************************************************************FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ
Disordered Region (DISEMBL)
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAK************TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ
Disordered Region (DISPRO)
******CLPSPLLVQGRQKLSLFITLPKLPLSPL*********VAKAS*******TSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q8LCA1	174	Thylakoid membrane phosph	no	no	0.587	0.5	0.465	8e-21
O04616	164	Uncharacterized protein A	no	no	0.824	0.743	0.338	3e-12
Q119Z5	881	Glutamate--tRNA ligase OS	yes	no	0.364	0.061	0.425	8e-07
Q8YX97	1014	Valine--tRNA ligase OS=No	no	no	0.405	0.059	0.35	0.0003

>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTW 119
           + K+ Q  W+   +D+  +  L FAG+VALW S  +I+AID+LP++P  LEL+GI ++ W
Sbjct: 86  IVKTAQEAWEKV-DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGW 144

Query: 120 FVYRYLLFKPDREELFQIINKSVSDILG 147
           F Y+ L+FKPDRE LF+ +  +  DILG
Sbjct: 145 FTYKNLVFKPDREALFEKVKSTYKDILG 172

Arabidopsis thaliana (taxid: 3702)

>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)

Query: 25  TLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFA 84
           T+P L L   N  Q    +  +AS E + S  +  +   ++  WD   E++  ++  G  
Sbjct: 42  TVP-LKLVSGNGLQKVELLKTRASSEETSSIDTNELITDLKEKWDGL-ENKSTVLIYGGG 99

Query: 85  GIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSD 144
            IVA+W S  ++ AI+ +P++P  +EL+G+ ++ WFVYRYLLFK  R+EL + I      
Sbjct: 100 AIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKK 159

Query: 145 ILGQ 148
           I G 
Sbjct: 160 IAGS 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q119Z5|SYE_TRIEI Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) GN=gltX PE=3 SV=1

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 95  LITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ 148
           +I A+D +PI+    ELIG+++  WFVYRYLL + +R+EL   I     +I G+
Sbjct: 826 VIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDKIENIKREIFGK 879

Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|Q8YX97|SYV_NOSS1 Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=valS PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 76  LGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELF 135
           L  IGL  AG+V L  ++ +   +D +P +    E++G+ +S WFV R LL  P R+   
Sbjct: 845 LKTIGLVIAGLVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRFL 904

Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
224070909	146	predicted protein [Populus trichocarpa]	0.979	0.993	0.671	3e-50
18403896	156	uncharacterized protein [Arabidopsis tha	0.993	0.942	0.643	2e-46
224054368	146	predicted protein [Populus trichocarpa]	0.979	0.993	0.697	3e-46
118488080	146	unknown [Populus trichocarpa]	0.986	1.0	0.675	2e-45
21554231	156	unknown [Arabidopsis thaliana]	0.993	0.942	0.636	2e-45
388497330	178	unknown [Lotus japonicus]	0.979	0.814	0.716	3e-45
79319729	155	uncharacterized protein [Arabidopsis tha	0.986	0.941	0.636	2e-44
255549936	146	Thylakoid membrane phosphoprotein 14 kDa	0.979	0.993	0.684	1e-42
297852972	158	hypothetical protein ARALYDRAFT_892226 [	0.986	0.924	0.618	5e-42
388496712	146	unknown [Medicago truncatula]	0.979	0.993	0.691	8e-41

>gi|224070909|ref|XP_002303292.1| predicted protein [Populus trichocarpa] gi|222840724|gb|EEE78271.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 125/149 (83%), Gaps = 4/149 (2%)

Query: 1   MASITACLPSP-LLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
           MASITA LPSP LLV G++ LS   TL  LPLSP+ ++QNC+++V +A+GESSESS  L 
Sbjct: 1   MASITASLPSPPLLVHGKRTLS--STLQTLPLSPIKDRQNCVSVVVRATGESSESSAPLG 58

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTW 119
           + KSV+N+WD+S EDRL L+GLGFA +VA+W S  LI AIDKLP++P+ LELIGILFS+W
Sbjct: 59  IVKSVKNIWDDS-EDRLALVGLGFAALVAIWTSAKLILAIDKLPVVPSVLELIGILFSSW 117

Query: 120 FVYRYLLFKPDREELFQIINKSVSDILGQ 148
           F+YRYLLFKP+REELFQII KSV++ILGQ
Sbjct: 118 FIYRYLLFKPNREELFQIIKKSVANILGQ 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403896|ref|NP_564603.1| uncharacterized protein [Arabidopsis thaliana] gi|6850346|gb|AAF29409.1|AC022354_8 unknown protein [Arabidopsis thaliana] gi|15294156|gb|AAK95255.1|AF410269_1 At1g52220/F9I5_10 [Arabidopsis thaliana] gi|20453285|gb|AAM19881.1| At1g52220/F9I5_10 [Arabidopsis thaliana] gi|332194648|gb|AEE32769.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 121/157 (77%), Gaps = 10/157 (6%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIVAKASGES 51
           MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   ++++ KASGES
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 52  SESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALEL 111
           S+SST L V  ++QNVWD S EDRLGLIGLGFAGIVALWAS+NLITAIDKLP+I +  EL
Sbjct: 61  SDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFEL 119

Query: 112 IGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ 148
           +GILFSTWF YRYLLFKPDR+EL +I+ KSV+DILGQ
Sbjct: 120 VGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054368|ref|XP_002298225.1| predicted protein [Populus trichocarpa] gi|222845483|gb|EEE83030.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/149 (69%), Positives = 127/149 (85%), Gaps = 4/149 (2%)

Query: 1   MASITACLPSP-LLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
           MASI A LPSP LLV G++    F TL KLPLS + E+QNC+A+V KA+GESSESSTSL+
Sbjct: 1   MASIYANLPSPPLLVHGKR--IPFRTLQKLPLSTIKERQNCVAVVVKATGESSESSTSLS 58

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTW 119
           + KSVQN+WD+S EDRL L+GLGFA +VA+WAS N+ITA+DKLP++P+ALE +GIL+S+W
Sbjct: 59  IVKSVQNIWDDS-EDRLPLVGLGFAALVAVWASANVITAVDKLPVVPSALEFVGILYSSW 117

Query: 120 FVYRYLLFKPDREELFQIINKSVSDILGQ 148
           FVYRYLL KP+REELFQII KSV DILGQ
Sbjct: 118 FVYRYLLLKPNREELFQIIKKSVGDILGQ 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488080|gb|ABK95860.1| unknown [Populus trichocarpa]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/148 (67%), Positives = 125/148 (84%), Gaps = 2/148 (1%)

Query: 1   MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTV 60
           MASI A LPSP L+   +++  F TL KLPLS + E+QNC+A+  KA+GESSESSTSL++
Sbjct: 1   MASIYANLPSPPLLVHSKRIP-FRTLQKLPLSTIKERQNCVAVAVKATGESSESSTSLSI 59

Query: 61  FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWF 120
            KSVQN+WD+S EDRL L+GLGFA +VA+WAS N+ITA+DKLP++P+ALE +GIL+S+WF
Sbjct: 60  VKSVQNIWDDS-EDRLPLVGLGFAALVAVWASANVITAVDKLPVVPSALEFVGILYSSWF 118

Query: 121 VYRYLLFKPDREELFQIINKSVSDILGQ 148
           VYRYLL KP+REELFQII KSV DILGQ
Sbjct: 119 VYRYLLLKPNREELFQIIKKSVGDILGQ 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554231|gb|AAM63306.1| unknown [Arabidopsis thaliana]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 120/157 (76%), Gaps = 10/157 (6%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIVAKASGES 51
           MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   ++++ KASGES
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 52  SESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALEL 111
           S+SST L V  ++QNVWD S EDRLGLIGLGFAGIVALWAS+NLITAIDKL +I +  EL
Sbjct: 61  SDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLITAIDKLXVISSGFEL 119

Query: 112 IGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ 148
           +GILFSTWF YRYLLFKPDR+EL +I+ KSV+DILGQ
Sbjct: 120 VGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497330|gb|AFK36731.1| unknown [Lotus japonicus]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/148 (71%), Positives = 119/148 (80%), Gaps = 3/148 (2%)

Query: 1   MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTV 60
           MASI A L  PLL+ GR+  S     P  P+S L  ++N +A+V KASGESSESSTSLTV
Sbjct: 34  MASIAASLQPPLLLHGRK--SHTGNFPSFPVSLLPGRRNLIALVVKASGESSESSTSLTV 91

Query: 61  FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWF 120
            +SVQNVWD   EDRLGLIG GFAGIVALWAS NLITA+D+LP++P  LELIGILFS WF
Sbjct: 92  LQSVQNVWDKP-EDRLGLIGFGFAGIVALWASANLITAVDQLPVLPTVLELIGILFSVWF 150

Query: 121 VYRYLLFKPDREELFQIINKSVSDILGQ 148
            YRYLLFKPDREELFQI+NKSVSDILGQ
Sbjct: 151 TYRYLLFKPDREELFQILNKSVSDILGQ 178

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79319729|ref|NP_001031173.1| uncharacterized protein [Arabidopsis thaliana] gi|332194649|gb|AEE32770.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 120/157 (76%), Gaps = 11/157 (7%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIVAKASGES 51
           MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   ++++ KASGES
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 52  SESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALEL 111
           S+SST L V  ++QN WD S EDRLGLIGLGFAGIVALWAS+NLITAIDKLP+I +  EL
Sbjct: 61  SDSSTDLDVVSTIQN-WDKS-EDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFEL 118

Query: 112 IGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ 148
           +GILFSTWF YRYLLFKPDR+EL +I+ KSV+DILGQ
Sbjct: 119 VGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549936|ref|XP_002516019.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis] gi|223544924|gb|EEF46439.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 122/149 (81%), Gaps = 4/149 (2%)

Query: 1   MASITACLPSP-LLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
           MASI A LP+P LLV  R   +LF T  K P+ PL E QN +A+V KA+GESSESS+SL+
Sbjct: 1   MASIVANLPAPALLVPSRT--TLFRTPQKGPVFPLKETQNRVAVVMKAAGESSESSSSLS 58

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTW 119
           + KSV+NVWD SSEDR  + GLGFA IV +WAS NL++A+DKLP+IP+ LELIGIL+S+W
Sbjct: 59  IVKSVKNVWD-SSEDRWAIGGLGFAAIVGVWASANLVSAVDKLPLIPSVLELIGILYSSW 117

Query: 120 FVYRYLLFKPDREELFQIINKSVSDILGQ 148
           F+YRYLLFKPDREELFQIINKSVS ILGQ
Sbjct: 118 FIYRYLLFKPDREELFQIINKSVSSILGQ 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852972|ref|XP_002894367.1| hypothetical protein ARALYDRAFT_892226 [Arabidopsis lyrata subsp. lyrata] gi|297340209|gb|EFH70626.1| hypothetical protein ARALYDRAFT_892226 [Arabidopsis lyrata subsp. lyrata]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 99/160 (61%), Positives = 116/160 (72%), Gaps = 14/160 (8%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPL--NEK---QNCLAIVAKAS 48
           MASI+A LPSPLL+  R       QKLS  +T     +  +  N +   ++ L ++ KAS
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLSFSLTRGTNDIFSVFSNSRFHLKSSLTLMVKAS 60

Query: 49  GESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNA 108
            ESSESST L V  S+QNVWD S EDRLGLIGL FA IVALWAS+NLITAIDKLP+I   
Sbjct: 61  -ESSESSTDLNVVTSIQNVWDKS-EDRLGLIGLSFAAIVALWASLNLITAIDKLPVISTG 118

Query: 109 LELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ 148
            EL+GILFSTWF YRYLLFKPDREEL +I+ KSV+DILGQ
Sbjct: 119 FELVGILFSTWFTYRYLLFKPDREELSKIVKKSVADILGQ 158

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496712|gb|AFK36422.1| unknown [Medicago truncatula]

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 103/149 (69%), Positives = 113/149 (75%), Gaps = 4/149 (2%)

Query: 1   MASITACLPSPLLVQGRQKL-SLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
           MASI A LP PLL+ GR      F       L P   +++ +  V KASGESSESSTSLT
Sbjct: 1   MASIIASLPPPLLLHGRNSFPGNFQNFSVSSLPP--GRRSNVPFVVKASGESSESSTSLT 58

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTW 119
           VFKSVQNVWD   EDRLGL GLGFA +VALWAS NLI AIDKLP++P +LELIGILFS W
Sbjct: 59  VFKSVQNVWDKP-EDRLGLFGLGFAAVVALWASTNLIAAIDKLPVVPISLELIGILFSVW 117

Query: 120 FVYRYLLFKPDREELFQIINKSVSDILGQ 148
           F YRYLLFKPDREELFQI+NKS SDILGQ
Sbjct: 118 FTYRYLLFKPDREELFQILNKSTSDILGQ 146

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:2037435	156	AT1G52220 "AT1G52220" [Arabido	0.993	0.942	0.566	8.9e-38
TAIR|locus:2044335	174	PSI-P "photosystem I P subunit	0.554	0.471	0.481	5.1e-19
TAIR|locus:2125018	164	AT4G01150 "AT4G01150" [Arabido	0.945	0.853	0.307	5e-12
TAIR|locus:2121065	193	AT4G38100 [Arabidopsis thalian	0.513	0.393	0.315	2.9e-09

TAIR|locus:2037435 AT1G52220 "AT1G52220" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 89/157 (56%), Positives = 106/157 (67%)

Query:     1 MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIXXXXXXXX 51
             MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   +++        
Sbjct:     1 MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query:    52 XXXXXXXXXXXXVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALEL 111
                         +QNVWD S EDRLGLIGLGFAGIVALWAS+NLITAIDKLP+I +  EL
Sbjct:    61 SDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFEL 119

Query:   112 IGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ 148
             +GILFSTWF YRYLLFKPDR+EL +I+ KSV+DILGQ
Sbjct:   120 VGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2044335 PSI-P "photosystem I P subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 40/83 (48%), Positives = 58/83 (69%)

Query:    65 QNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRY 124
             Q  W+   +D+  +  L FAG+VALW S  +I+AID+LP++P  LEL+GI ++ WF Y+ 
Sbjct:    91 QEAWEKV-DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKN 149

Query:   125 LLFKPDREELFQIINKSVSDILG 147
             L+FKPDRE LF+ +  +  DILG
Sbjct:   150 LVFKPDREALFEKVKSTYKDILG 172

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=ISS;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IDA

GO:0030093 "chloroplast photosystem I" evidence=IMP;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2125018 AT4G01150 "AT4G01150" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 44/143 (30%), Positives = 66/143 (46%)

Query:     5 TACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIXXXXXXXXXXXXXXXXXXXXV 64
             T C   P L       S F T+P L L   N  Q    +                    +
Sbjct:    23 TRCSAVPYLPPRSFGRSSF-TVP-LKLVSGNGLQKVELLKTRASSEETSSIDTNELITDL 80

Query:    65 QNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRY 124
             +  WD   E++  ++  G   IVA+W S  ++ AI+ +P++P  +EL+G+ ++ WFVYRY
Sbjct:    81 KEKWDGL-ENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRY 139

Query:   125 LLFKPDREELFQIINKSVSDILG 147
             LLFK  R+EL + I      I G
Sbjct:   140 LLFKSSRKELAEDIESLKKKIAG 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2121065 AT4G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 24/76 (31%), Positives = 48/76 (63%)

Query:    72 SEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDR 131
             S+    ++  G   IVAL+ +  ++++++ +P+ P  +E++G+ ++ WF  RYLLFK +R
Sbjct:   114 SDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNR 173

Query:   132 EELFQIINKSVSDILG 147
             EEL   +++    +LG
Sbjct:   174 EELKTKVSEIKKQVLG 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.142   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      148       128   0.00091  102 3  11 22  0.50    30
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  129 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.92u 0.20s 12.12t   Elapsed:  00:00:00
  Total cpu time:  11.92u 0.20s 12.12t   Elapsed:  00:00:00
  Start:  Fri May 10 12:12:34 2013   End:  Fri May 10 12:12:34 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
pfam14159	90	pfam14159, DUF4308, Domain of unknown function (DU	1e-28
PLN02777	167	PLN02777, PLN02777, photosystem I P subunit (PSI-P	2e-28

>gnl|CDD|222574 pfam14159, DUF4308, Domain of unknown function (DUF4308)

 Score =  100 bits (251), Expect = 1e-28
 Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 61  FKSVQNVWDNSSEDRLGLIGLGFAGI----VALWASVNLITAIDKLPIIPNALELIGILF 116
            K + N W    ED+     LG   I    VALW S  ++ AID +P++P  LEL+G+ +
Sbjct: 1   LKKLPNYWG-KFEDKYKRPLLGVGAIIAVIVALWLSAAVLDAIDSIPLLPGLLELVGLGY 59

Query: 117 STWFVYRYLLFKPDREELFQIINKSVSDILG 147
           S WFVYRYLLF  DR+EL   I +   +ILG
Sbjct: 60  SGWFVYRYLLFSEDRQELLAKIQELKKEILG 90

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 90 amino acids in length. The domain is found in several amino-acyl tRNA synthetase enzymes as well as in isolation in single domain proteins. Length = 90

>gnl|CDD|178376 PLN02777, PLN02777, photosystem I P subunit (PSI-P)

 Score =  102 bits (255), Expect = 2e-28
 Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 15/138 (10%)

Query: 24  ITLPKLPLSPLNEKQN-------CLAI----VAKASGES---SESSTSLTVFKSVQNVWD 69
           ++LP LP  P+            C  I    V  A+GE+    E++    + K+VQ  WD
Sbjct: 29  VSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVKTVQEAWD 88

Query: 70  NSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKP 129
              ED+  +  L FAG+VALW S  +I+AID+LP++P  LEL+GI ++ WF Y+ L+FKP
Sbjct: 89  KV-EDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKP 147

Query: 130 DREELFQIINKSVSDILG 147
           DRE L + I  +  +I+G
Sbjct: 148 DREALIEKIKDTYKEIIG 165

Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
PLN02777	167	photosystem I P subunit (PSI-P)	100.0
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	100.0
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	87.23
PF12911	56	OppC_N: N-terminal TM domain of oligopeptide trans	81.97
PF11364	81	DUF3165: Protein of unknown function (DUF3165); In	81.16
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	80.97

>PLN02777 photosystem I P subunit (PSI-P)

Probab=100.00  E-value=2e-45  Score=292.24  Aligned_cols=127  Identities=42%  Similarity=0.851  Sum_probs=117.4

Q ss_pred             ccccCCCCCCCCCcc-----------hhhhhhhHhHhhcCCCccc--cchh-hhhHHHHHHHhhhhcchhHHHHHHHHHH
Q 032035           21 SLFITLPKLPLSPLN-----------EKQNCLAIVAKASGESSES--STSL-TVFKSVQNVWDNSSEDRLGLIGLGFAGI   86 (148)
Q Consensus        21 ~~~~~~~~~~~~~~~-----------~~~~~~~v~~~a~~~~~~~--~~~~-e~~~~lq~~W~~~~e~~~~v~~l~~~ai   86 (148)
                      +++..+|.||.|+..           +|+..|||++||++|+|++  ++++ |+++++||+||+ .|||++++++++++|
T Consensus        26 ~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv~~a~ge~s~~~~~~~~~ei~k~~~e~Wd~-~EdK~av~~l~~aai  104 (167)
T PLN02777         26 PQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVKTVQEAWDK-VEDKYAVSSLAFAGV  104 (167)
T ss_pred             CccccCCCCCCCCcccCCCcchhHHHHHHhHHHHHHHhccCCCcccccccHHHHHHHHHHHHhh-hcchhHHHHHHHHHH
Confidence            367788888755432           7789999999999998885  4455 999999999999 999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhhccccccHHHHHHHHHHhhhhhcCC
Q 032035           87 VALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ  148 (148)
Q Consensus        87 val~~~~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~~i~~~k~~I~G~  148 (148)
                      |++|++.+||+|||+|||+|++||||||||++||+||||+|++|||||+++|+++|++|+|+
T Consensus       105 Val~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk~~IlG~  166 (167)
T PLN02777        105 VALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKEIIGS  166 (167)
T ss_pred             HHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999999999999999995

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=100.00  E-value=2.5e-33  Score=203.22  Aligned_cols=88  Identities=41%  Similarity=0.731  Sum_probs=84.8

Q ss_pred             hhhHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhhccccccHHHHHHHH
Q 032035           59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQII  138 (148)
Q Consensus        59 e~~~~lq~~W~~~~e~~~~v~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~~i  138 (148)
                      ++.+++++.|++ ++++...+++++++++++|++.++++|||+||++|++||+||+||++||+||||+|++|||||.+++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i   81 (90)
T PF14159_consen    3 KLPEYWGEFFDK-YKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI   81 (90)
T ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence            567788888999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcC
Q 032035          139 NKSVSDILG  147 (148)
Q Consensus       139 ~~~k~~I~G  147 (148)
                      +++|++|+|
T Consensus        82 ~~~k~~i~G   90 (90)
T PF14159_consen   82 QSLKKEILG   90 (90)
T ss_pred             HHHHHHhcC
Confidence            999999998

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=87.23  E-value=1.3  Score=32.15  Aligned_cols=46  Identities=17%  Similarity=0.288  Sum_probs=35.9

Q ss_pred             hHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH-HhhccCCchh
Q 032035           61 FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT-AIDKLPIIPN  107 (148)
Q Consensus        61 ~~~lq~~W~~~~e~~~~v~~l~~~aival~~~~~vl~-AId~iPLlp~  107 (148)
                      ++++++.|++ .++++....+.++++++.-+..-+.. .+|.|--+|-
T Consensus         1 l~~~~~~~~~-~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPl   47 (90)
T PF14159_consen    1 LSKLPEYWGE-FFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPL   47 (90)
T ss_pred             CchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            3689999999 99999999999999888776666554 4566655553

>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C

Probab=81.97  E-value=3.3  Score=26.35  Aligned_cols=27  Identities=26%  Similarity=0.492  Sum_probs=21.3

Q ss_pred             HHHHHHhhhhcchhHHHHHHHHHHHHH
Q 032035           63 SVQNVWDNSSEDRLGLIGLGFAGIVAL   89 (148)
Q Consensus        63 ~lq~~W~~~~e~~~~v~~l~~~aival   89 (148)
                      ..|+.|.++.+||.+++|+++-.++.+
T Consensus         4 ~~~~~~~~f~~nk~a~~gl~il~~~vl   30 (56)
T PF12911_consen    4 PWKDAWRRFRRNKLAVIGLIILLILVL   30 (56)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            568899998999999998776655543

>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed

Probab=81.16  E-value=4.8  Score=29.39  Aligned_cols=52  Identities=15%  Similarity=0.368  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhhccccccHH
Q 032035           81 LGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDRE  132 (148)
Q Consensus        81 l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL~~~~R~  132 (148)
                      +++.+++++-+..++++.+.-.-+-|-+|=-+|+...++|..|.+.+=++|+
T Consensus        29 i~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~Mi~l~y~alrDi~~l~~k~   80 (81)
T PF11364_consen   29 IGLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLAMIVLGYFALRDISKLSTKK   80 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence            5566777778888889999988888999999999999999999988766654

Currently there is no known function.

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=80.97  E-value=6.2  Score=30.26  Aligned_cols=37  Identities=24%  Similarity=0.420  Sum_probs=30.1

Q ss_pred             HHHh-hccCCchhHHHHHHHHHHhhhhHhhccccccHH
Q 032035           96 ITAI-DKLPIIPNALELIGILFSTWFVYRYLLFKPDRE  132 (148)
Q Consensus        96 l~AI-d~iPLlp~llELVGigyt~WFvyRyLL~~~~R~  132 (148)
                      +.++ +..|.+-..++++|..|..|+.|+.+-.+.+.+
T Consensus        48 ~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~   85 (191)
T PF01810_consen   48 LSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSK   85 (191)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence            3444 669999999999999999999999987554443

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00