Citrus Sinensis ID: 032052

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASSSGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVKAELEEVRVKVLQRLKHIEEDEFVTSLLNC
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHcccEEEEEEcccccccccccccHHHHHHHHHcccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MVTFSKRRQGLFKKAQEYANITGSQIAVLVfspagnpyvhgspsfDAVIDKFLsvnggasssgqvgahhneadvcrtptpfHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVKAELEEVRVKVLQRLKHIEEDEFVTSLLNC
Flexible Loop (DISEMBL)
mvtfskrrqGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASSSGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVKAELEEVRVKVLQrlkhieedefvtsllnc
Low Complexity Region (SEG)
MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASSSGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVKAELEEVRVKVLQRLKHIEEDEFVTSLLNC
Disordered region (IsUnstruct)
***********FKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFL********************VCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVKAELEEVRVKVLQRLKHIEEDEFV******
Disordered Region (DISOPRED)
MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDK******************************************************************************************VTS****
Disordered Region (DISEMBL)
MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGA***********EADVCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVKAELEEVRVKVLQRLKHIEEDEFVTSLLNC
Disordered Region (DISPRO)
*VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASSSGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVKAELEEVRVKVLQRLKHIEEDEFV******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASSSGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVxxxxxxxxxxxxxxxxxxxxxEFVTSLLNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q4PSU4	264	Agamous-like MADS-box pro	no	no	0.425	0.238	0.476	8e-12
Q9FKK2	299	Agamous-like MADS-box pro	no	no	0.371	0.183	0.509	7e-10
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.405	0.25	0.433	1e-07
Q6EP49	240	MADS-box transcription fa	no	no	0.344	0.212	0.450	2e-07
Q6Z6W2	241	MADS-box transcription fa	no	no	0.932	0.572	0.299	3e-07
Q9SZJ6	228	Agamous-like MADS-box pro	no	no	0.574	0.372	0.340	3e-07
Q9XJ66	228	MADS-box transcription fa	no	no	0.344	0.223	0.470	5e-07
Q5K4R0	246	MADS-box transcription fa	no	no	0.344	0.207	0.431	6e-07
Q69TG5	245	MADS-box transcription fa	no	no	0.344	0.208	0.470	7e-07
Q7XUN2	249	MADS-box transcription fa	no	no	0.459	0.273	0.385	8e-07

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 44/63 (69%)

Query: 2   VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASS 61
           VTFSKRR GLFKKA E   + G++I ++VFSPA  P+  G PS ++V+D+++S N  + +
Sbjct: 80  VTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLA 139

Query: 62  SGQ 64
             Q
Sbjct: 140 QSQ 142

Probable transcription factor. Controls central cell differentiation during female gametophyte development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN 56
          VTFSKRR GLFKKA E   + G+++A++VFSP    +  G P+ D+VID+F++ N
Sbjct: 24 VTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNN 78

Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development.

Arabidopsis thaliana (taxid: 3702)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASS 61
          VTFSKRR GL KKA+E A +  +++ V++FS  G  Y   S S  +VI+++    G  SS
Sbjct: 19 VTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSSSMKSVIERYSDAKGETSS 78

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 36/51 (70%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
          VTFSKRR G+FKKA+E A +  +++ +++FS  G  Y + S S  +VID++
Sbjct: 19 VTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRY 69

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z6W2|MAD57_ORYSJ MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 19/157 (12%)

Query: 2   VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNG---G 58
           VTFSKRR GL KKA+E + +  +++ ++VFS  G  Y   S +   VID++ +      G
Sbjct: 19  VTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRYTNAKEELLG 78

Query: 59  ASSSGQVGAHHNEADVCRTPTPFHLVLQNHHNE----------ADVCRGFLMALEDKIKR 108
            +++ ++     EA   R     H  LQ  H +              +G    LE  ++ 
Sbjct: 79  GNATSEIKIWQREAASLR--QQLH-NLQESHKQLMGEELSGLGVRDLQGLENRLEISLRN 135

Query: 109 CRSAEDLSAVKAELEEVRVKVLQRLKHIEEDEFVTSL 145
            R  +D + +K+E+EE+ VK    L H E  E   SL
Sbjct: 136 IRMRKD-NLLKSEIEELHVK--GSLIHQENIELSRSL 169

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SZJ6|AGL21_ARATH Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 2   VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF----LSVNG 57
           VTFSKRR+GL KKA+E A +  +++ +++FS  G  Y   S S  +VID++    +    
Sbjct: 19  VTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQ 78

Query: 58  GASSSGQVGAHHNEADVCRTPTPFHLVLQNH 88
             + + +V     EA V R     H + +NH
Sbjct: 79  LLNPASEVKFWQREAAVLR--QELHALQENH 107

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XJ66|MAD22_ORYSJ MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
          VTFSKRR+GLFKKA+E + +  + +A++VFS  G      S S + +IDK+
Sbjct: 19 VTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKY 69

Probable transcription factor. May be required for spikelet (rice flower) development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5K4R0|MAD47_ORYSJ MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 36/51 (70%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
          VTFSKRR+GLFKKA+E + +  +++ ++VFS  G  +   S S + +ID++
Sbjct: 38 VTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRY 88

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69TG5|MAD55_ORYSJ MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
          VTFSKRR+GLFKKA+E A +  + +A++VFS  G      S + + +IDK+
Sbjct: 19 VTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKY 69

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLS--VNGGA 59
          VTFSKRR GL KKA E + +  +++A+++FS  G  Y  GS   +  ++K+ S   N   
Sbjct: 19 VTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQG 78

Query: 60 SSSGQVGAHH 69
          S+S   G  H
Sbjct: 79 SNSALAGGEH 88

Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
297823233	172	MADS-box family protein [Arabidopsis lyr	0.635	0.546	0.385	8e-12
255562152	226	mads box protein, putative [Ricinus comm	0.885	0.579	0.342	8e-12
224077624	178	predicted protein [Populus trichocarpa]	0.905	0.752	0.340	1e-11
356511377	177	PREDICTED: agamous-like MADS-box protein	0.432	0.361	0.492	1e-11
224054544	202	predicted protein [Populus trichocarpa]	0.358	0.262	0.566	2e-11
356527759	161	PREDICTED: agamous-like MADS-box protein	0.351	0.322	0.634	3e-11
356527761	177	PREDICTED: agamous-like MADS-box protein	0.351	0.293	0.615	5e-11
242060612	329	hypothetical protein SORBIDRAFT_04g00441	0.432	0.194	0.5	9e-11
225463450	222	PREDICTED: agamous-like MADS-box protein	0.817	0.545	0.387	9e-11
359483542	223	PREDICTED: agamous-like MADS-box protein	0.466	0.309	0.536	9e-11

>gi|297823233|ref|XP_002879499.1| MADS-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297325338|gb|EFH55758.1| MADS-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 2/96 (2%)

Query: 2   VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASS 61
           VTFSKRR GLFKKA E A +  +++ ++VFSP G P+ +G P+ D+V ++F+     + S
Sbjct: 19  VTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPNLDSVAERFMREYDDSDS 78

Query: 62  SGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRG 97
             +  + +N   + R     HL L N   EA+  RG
Sbjct: 79  GDEKESGNNRPKLKRMSE--HLDLLNQEIEAEKNRG 112

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562152|ref|XP_002522084.1| mads box protein, putative [Ricinus communis] gi|223538683|gb|EEF40284.1| mads box protein, putative [Ricinus communis]

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 9/140 (6%)

Query: 2   VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN--GGA 59
           VTFSKRR GLFKKA E   + G +IA+LVFSPA   +  G P  ++V+D+FL+ +    +
Sbjct: 44  VTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSFGHPEVESVLDRFLARHPLPTS 103

Query: 60  SSSGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVK 119
           SS+ Q+   H  A+VC         L    +E    +G L+   D+I+  +S++++   +
Sbjct: 104 SSAHQLIEAHRNANVCELNMQLTHTLNQMEDEKK--KGELL---DQIR--KSSQNMCWWE 156

Query: 120 AELEEVRVKVLQRLKHIEED 139
           A ++E+ +  L++L+   E+
Sbjct: 157 APIDELGMHELEQLRFALEE 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077624|ref|XP_002305333.1| predicted protein [Populus trichocarpa] gi|222848297|gb|EEE85844.1| predicted protein [Populus trichocarpa]

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 10/144 (6%)

Query: 2   VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGAS- 60
           VTFSKRR G+FKKA E A + G QIA++VFSP G P+  G P+ + V  +FL+ +     
Sbjct: 19  VTFSKRRTGVFKKANELATLCGVQIAIIVFSPGGKPFSFGHPNVEFVAQRFLNRDKKPKV 78

Query: 61  SSGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCR-------SAE 113
           S+G +     EA + +  +  + +L+    E    RG L+    K+K          + +
Sbjct: 79  SAGSLVDSQQEARLEKLNSQLNDILRKLQYERK--RGELLEKAMKLKGSEPKLIGELNLD 136

Query: 114 DLSAVKAELEEVRVKVLQRLKHIE 137
           +L  +K ELEE++ K+  R+  +E
Sbjct: 137 ELRKMKGELEELQEKLRGRVTEME 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511377|ref|XP_003524403.1| PREDICTED: agamous-like MADS-box protein AGL61-like [Glycine max]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 7/71 (9%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLS------- 54
          VTFSKRR GLFKKA E + + G+++A++VFSP  NPY  G PS D V+DKFL        
Sbjct: 19 VTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNNPYSFGHPSVDVVVDKFLKQEPKSNV 78

Query: 55 VNGGASSSGQV 65
          V G ++ +G +
Sbjct: 79 VQGTSNEAGDI 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054544|ref|XP_002298313.1| predicted protein [Populus trichocarpa] gi|222845571|gb|EEE83118.1| predicted protein [Populus trichocarpa]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 1  MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFL 53
          ++TFSKRR G++KKA E A +TG++IA+ VFSPAG P+  G PS ++VI++FL
Sbjct: 24 LITFSKRRSGIYKKASELATLTGAEIAIAVFSPAGKPFSFGHPSVESVINRFL 76

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527759|ref|XP_003532475.1| PREDICTED: agamous-like MADS-box protein AGL61-like [Glycine max]

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 39/52 (75%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFL 53
          VTFSKRR GLFKKA E + + G+++AV+VFSP  NPY  G PS D V DKFL
Sbjct: 19 VTFSKRRTGLFKKANELSILCGAEVAVVVFSPGNNPYSFGHPSVDVVADKFL 70

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527761|ref|XP_003532476.1| PREDICTED: agamous-like MADS-box protein AGL61-like [Glycine max]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 39/52 (75%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFL 53
          VTFSKRR GLFKKA E + + G+++A++VFSP  NPY  G PS D V DKFL
Sbjct: 19 VTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNNPYSFGHPSVDVVADKFL 70

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242060612|ref|XP_002451595.1| hypothetical protein SORBIDRAFT_04g004410 [Sorghum bicolor] gi|241931426|gb|EES04571.1| hypothetical protein SORBIDRAFT_04g004410 [Sorghum bicolor]

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query: 2   VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASS 61
           V FSKRR GL+KKA E   +TG+++A++VFSPAG PY  G PS  AV+D++L  +   S+
Sbjct: 55  VCFSKRRDGLYKKASELCALTGAKVALIVFSPAGKPYSFGHPSVSAVVDRYLDPDLPGSA 114

Query: 62  SGQV 65
           +  V
Sbjct: 115 ANDV 118

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463450|ref|XP_002272654.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 68/142 (47%), Gaps = 21/142 (14%)

Query: 2   VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASS 61
           VTFSKRR GLFKKA E   + G++ AV+VFSP G  +V G P+ DAVID FL  +   SS
Sbjct: 30  VTFSKRRAGLFKKAGELCVLCGAEAAVIVFSPGGRAFVFGHPTADAVIDHFLGRDTDTSS 89

Query: 62  SGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCR-------GFLMALEDKIKRCRSAED 114
            G V A              H  +Q  + EA V R       GF     D         +
Sbjct: 90  RGVVPAEQV----------VHGQVQRQYLEA-VGRAEVKEEGGFWW---DAPIENMGLNE 135

Query: 115 LSAVKAELEEVRVKVLQRLKHI 136
           L   K  LE++R KV  R+  I
Sbjct: 136 LEQFKGSLEKLREKVADRVAEI 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483542|ref|XP_002264830.2| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 45/69 (65%)

Query: 1  MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGAS 60
          +VTFSKRR GLFKKA E   + G + AV+VFSPAG  +V G P+ DAVID+FL  + G  
Sbjct: 29 LVTFSKRRTGLFKKAGELCVLCGVEAAVIVFSPAGRAFVFGHPTADAVIDRFLGRDTGTI 88

Query: 61 SSGQVGAHH 69
          S   V A  
Sbjct: 89 SRAVVPAEQ 97

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:2047304	264	AGL61 "AGAMOUS-like 61" [Arabi	0.952	0.534	0.315	5.6e-13
TAIR|locus:2040819	172	AGL29 "AGAMOUS-like 29" [Arabi	0.844	0.726	0.323	1e-11
TAIR|locus:2103415	178	AGL91 "AGAMOUS-like 91" [Arabi	0.979	0.814	0.270	1e-11
TAIR|locus:4010713489	185	AGL64 "AGAMOUS-like 64" [Arabi	0.405	0.324	0.5	9.4e-11
TAIR|locus:2175188	299	AGL62 "AGAMOUS-like 62" [Arabi	0.371	0.183	0.509	1.2e-10
TAIR|locus:2032537	182	AGL59 "AGAMOUS-like 59" [Arabi	0.493	0.401	0.391	4.1e-10
TAIR|locus:2206320	226	AGL23 "AGAMOUS-like 23" [Arabi	0.344	0.225	0.509	6.6e-10
UNIPROTKB|Q6Q9I2	267	MADS15 "MADS-box transcription	0.344	0.191	0.423	6.7e-10
UNIPROTKB|Q5K4R0	246	MADS47 "MADS-box transcription	0.358	0.215	0.433	7.6e-10
TAIR|locus:2202420	184	AGL102 "AGAMOUS-like 102" [Ara	0.878	0.706	0.335	1.4e-09

TAIR|locus:2047304 AGL61 "AGAMOUS-like 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 46/146 (31%), Positives = 75/146 (51%)

Query:     2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASS 61
             VTFSKRR GLFKKA E   + G++I ++VFSPA  P+  G PS ++V+D+++S N  + +
Sbjct:    80 VTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLA 139

Query:    62 SGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVKAE 121
               Q     + A  C        +L     E    +G   A+E+  K       ++  +  
Sbjct:   140 QSQQ-LQGSPAASCELNMQLTHILSEVEEEKK--KG--QAMEEMRKESVRRSMINWWEKP 194

Query:   122 LEEVRVKVLQRLKHIEEDEFVTSLLN 147
             +EE+ +  LQ +K+  E+   T + N
Sbjct:   195 VEEMNMVQLQEMKYALEELRKTVVTN 220

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009559 "embryo sac central cell differentiation" evidence=IMP

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2040819 AGL29 "AGAMOUS-like 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 43/133 (32%), Positives = 67/133 (50%)

Query:     2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASS 61
             VTFSKRR GLFKKA E A +  +++ ++VFSP G P+ +G P+ D+V ++F+     + S
Sbjct:    19 VTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPNLDSVAERFMREYDDSDS 78

Query:    62 SGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVKAE 121
               +  + +    + R      L L N   EA+  RG     E   ++  SA D    K  
Sbjct:    79 GDEEKSGNYRPKLKRLSE--RLDLLNQEVEAEKERG-----EKSQEKLESAGD-ERFKES 130

Query:   122 LEEVRVKVLQRLK 134
             +E + +  L   K
Sbjct:   131 IETLTLDELNEYK 143

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2103415 AGL91 "AGAMOUS-like 91" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 43/159 (27%), Positives = 77/159 (48%)

Query:     2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSV-----N 56
             VTFSKRR GLFKKA E A +  +++ ++VFSP   PY  G P+FD + ++F +       
Sbjct:    19 VTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKPNFDVIAERFKNEFEEEEE 78

Query:    57 GGA-SSSGQVGAHH--NEADVCRTPTPF--HLVLQNHHNEADVCRGFLMALEDKIKRC-- 109
             G +  +SG    +    E  +C+           +  H E D+ +    A +DK  +   
Sbjct:    79 GDSCETSGYSRGNRARQEKKICKRLNSITEEAEAEKKHGE-DLHKWLESAEQDKFNKPIE 137

Query:   110 -RSAEDLSAVKAELEEVRVKVLQRLKHIEEDEFVTSLLN 147
               + E+L   +A+++++   +   + H++    +  L N
Sbjct:   138 ELTLEELKEFEAKIKKISCGIQSNISHMQASSSLMFLSN 176

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:4010713489 AGL64 "AGAMOUS-like 64" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 31/62 (50%), Positives = 43/62 (69%)

Query:     1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGAS 60
             +VT SKRR G++ K  E + + G+++A L +S +G PY  GSPSF AV ++FL  NG AS
Sbjct:    24 LVTLSKRRNGIYTKLSELSILCGAEVAFLGYSCSGKPYTFGSPSFQAVAERFL--NGEAS 81

Query:    61 SS 62
             SS
Sbjct:    82 SS 83

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2175188 AGL62 "AGAMOUS-like 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 28/55 (50%), Positives = 40/55 (72%)

Query:     2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN 56
             VTFSKRR GLFKKA E   + G+++A++VFSP    +  G P+ D+VID+F++ N
Sbjct:    24 VTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNN 78

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009960 "endosperm development" evidence=IMP

TAIR|locus:2032537 AGL59 "AGAMOUS-like 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query:     2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASS 61
             VTFSKR  G++ K  E + + G ++A + +S +G PY  GSPSF AV ++FL+ +  +SS
Sbjct:    25 VTFSKRLNGIYTKISELSILCGVEVAFIGYSCSGKPYTFGSPSFQAVAERFLNGDASSSS 84

Query:    62 SGQVGAH-HNEADV 74
             S  +  + H +A +
Sbjct:    85 SSSLVMNAHKQAKI 98

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2206320 AGL23 "AGAMOUS-like 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 26/51 (50%), Positives = 37/51 (72%)

Query:     2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
             VTFSKR+ GLFKKA E+  +  ++IA++VFSPAG  +  G P+ D ++D F
Sbjct:    24 VTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHF 74

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

UNIPROTKB|Q6Q9I2 MADS15 "MADS-box transcription factor 15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 114 (45.2 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
 Identities = 22/52 (42%), Positives = 35/52 (67%)

Query:     2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPS-FDAVIDKF 52
             VTFSKRR GL KKA E + +  +++A +VFSP G  Y + + S  D +++++
Sbjct:    19 VTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERY 70

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5K4R0 MADS47 "MADS-box transcription factor 47" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 120 (47.3 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
 Identities = 23/53 (43%), Positives = 37/53 (69%)

Query:     2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLS 54
             VTFSKRR+GLFKKA+E + +  +++ ++VFS  G  +   S S + +ID++ S
Sbjct:    38 VTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNS 90

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

TAIR|locus:2202420 AGL102 "AGAMOUS-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 49/146 (33%), Positives = 78/146 (53%)

Query:     3 TFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASSS 62
             TFS+RR G+FKKA E A +   +IAVLV SP   PY +G P F+ V+++  +     S+S
Sbjct:    20 TFSRRRNGIFKKADELAKLCNVEIAVLVISPTNIPYTYGYPCFNDVVERIQN----PSAS 75

Query:    63 GQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVKAEL 122
              ++ +   E +  +    F   L+    + ++ +  +    D +K     EDL A KA+L
Sbjct:    76 SKLRSLMKELEQIKE---FQEDLRKKQ-QRNLEKSNMKENVD-LK----LEDLVAFKAKL 126

Query:   123 EEVRVKVLQRLKHIE-EDEFVTSLLN 147
             E  +   L+R KH+E ED    S+L+
Sbjct:   127 EAYQAG-LKR-KHVEMEDLSSPSILS 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.4__1464__AT2G34440.1 annotation not avaliable (172 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	2e-18
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	7e-16
smart00432	59	smart00432, MADS, MADS domain	7e-15
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	1e-14
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	1e-08
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	7e-06

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 73.7 bits (182), Expect = 2e-18
 Identities = 23/60 (38%), Positives = 39/60 (65%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASS 61
          VTFSKRR GL KKA E + +  +++A+++FS +G  Y   SPS + +I+++   +G +  
Sbjct: 18 VTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSSLW 77

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 67.7 bits (166), Expect = 7e-16
 Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 1  MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYV-HGSPSFDAVIDKFLSVN 56
           VTFSKRRQGLFKKA E + + G+++AV+V+SP+G  YV   S   + VI +F  ++
Sbjct: 17 AVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLS 73

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 64.5 bits (158), Expect = 7e-15
 Identities = 23/42 (54%), Positives = 30/42 (71%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSP 43
          VTFSKRR GLFKKA E + +  +++A++VFSP G  Y   SP
Sbjct: 18 VTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 64.1 bits (157), Expect = 1e-14
 Identities = 23/42 (54%), Positives = 30/42 (71%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSP 43
          VTFSKRR GLFKKA E + +  +++AV+VFSP+G  Y   S 
Sbjct: 18 VTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPY 38
          VTFSKRR G+FKKA E + +  +++AV++FS  G  Y
Sbjct: 11 VTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLY 47

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 44.2 bits (104), Expect = 7e-06
 Identities = 19/48 (39%), Positives = 32/48 (66%)

Query: 2   VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVI 49
           VTFSKR+ G+ KKA E + +TG+++ +LV S  G  +   +P  ++V+
Sbjct: 99  VTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVV 146

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.95
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.95
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.93
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.91
smart00432	59	MADS MADS domain.	99.9
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.89
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.55
COG5068	412	ARG80 Regulator of arginine metabolism and related	98.92
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	98.41
PF10491	214	Nrf1_DNA-bind: NLS-binding and DNA-binding and dim	86.0
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	84.52

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.95  E-value=1.2e-29  Score=160.67  Aligned_cols=59  Identities=39%  Similarity=0.756  Sum_probs=56.2

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhhhcCCCC
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGA   59 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~~~~~~~   59 (148)
                      ++||+|||.||||||+|||+||||+||+|||||+|++|.|++|++++||+||+..++..
T Consensus        17 ~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~   75 (77)
T cd00265          17 QVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSS   75 (77)
T ss_pred             HHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccc
Confidence            58999999999999999999999999999999999999999999999999999887653

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.95  E-value=4.1e-29  Score=183.80  Aligned_cols=61  Identities=51%  Similarity=0.820  Sum_probs=57.3

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcc--hHHHHHHhhhcCCCCCC
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPS--FDAVIDKFLSVNGGASS   61 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~ps--v~~Vi~ry~~~~~~~~~   61 (148)
                      ||||+|||.||||||+||||||||+||+|||||+|++|.|++|+  |+.|++||...+.+...
T Consensus        18 qvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen   18 QVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             hhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            79999999999999999999999999999999999999999987  99999999998776543

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.93  E-value=2.1e-26  Score=147.86  Aligned_cols=60  Identities=47%  Similarity=0.751  Sum_probs=55.8

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcc-hHHHHHHhhhcCCCCC
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPS-FDAVIDKFLSVNGGAS   60 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~ps-v~~Vi~ry~~~~~~~~   60 (148)
                      ||||+|||.||||||+||||||||+||+|||||+|+++.|++|+ ++.++++|...+....
T Consensus        17 ~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~   77 (83)
T cd00266          17 AVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALER   77 (83)
T ss_pred             hhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhh
Confidence            68999999999999999999999999999999999999998877 9999999998876644

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.91  E-value=6.3e-26  Score=131.92  Aligned_cols=42  Identities=52%  Similarity=0.871  Sum_probs=39.2

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCC
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGS   42 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~   42 (148)
                      ++||+|||.||||||+|||+||||+||+|||||+|++|.|+|
T Consensus        10 ~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen   10 KVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             HhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            479999999999999999999999999999999999999975

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>smart00432 MADS MADS domain

Probab=99.90  E-value=6.4e-25  Score=131.68  Aligned_cols=43  Identities=53%  Similarity=0.889  Sum_probs=41.8

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCc
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSP   43 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~p   43 (148)
                      ++||+|||.||||||+|||+||||+||+|||||+|++|.|++|
T Consensus        17 ~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432       17 QVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             hhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            5899999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.89  E-value=1.5e-24  Score=130.14  Aligned_cols=43  Identities=53%  Similarity=0.807  Sum_probs=41.5

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCc
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSP   43 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~p   43 (148)
                      ++||+|||.||||||+|||+||||+||+|||||+|+++.|++|
T Consensus        17 ~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120          17 QVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             hhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            5899999999999999999999999999999999999999876

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.55  E-value=1.6e-15  Score=115.51  Aligned_cols=62  Identities=37%  Similarity=0.619  Sum_probs=55.2

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcch---------HHHHHHhhhcCCCCCCC
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSF---------DAVIDKFLSVNGGASSS   62 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv---------~~Vi~ry~~~~~~~~~~   62 (148)
                      +|||||||.||||||+|||||+|.+|-++|.|.+|.+|.|.+|..         +.+|...++.+..+..+
T Consensus        79 ~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~pd~~~~~  149 (338)
T KOG0015|consen   79 YVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNAPDTPPND  149 (338)
T ss_pred             eeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcCCCCCCcc
Confidence            589999999999999999999999999999999999999998752         67888898888766443

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=98.92  E-value=4.3e-10  Score=89.57  Aligned_cols=49  Identities=39%  Similarity=0.606  Sum_probs=44.8

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHH
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVI   49 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi   49 (148)
                      .|||+||+.||+|||.||++|.|.+|.++|.|..|..+.|..|..+.|+
T Consensus        98 ~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~  146 (412)
T COG5068          98 SVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVV  146 (412)
T ss_pred             cchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccc
Confidence            5899999999999999999999999999999999999999988744443

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=98.41  E-value=9.4e-07  Score=58.48  Aligned_cols=61  Identities=16%  Similarity=0.137  Sum_probs=52.5

Q ss_pred             CchHHHHHHHHHhHHHHHHh-hhccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 032052           78 PTPFHLVLQNHHNEADVCRG-FLMALEDKIKRCRSAEDLSAVKAELEEVRVKVLQRLKHIEEDEF  141 (148)
Q Consensus        78 ~L~~~~~~l~~~l~~~~~~~-~l~~~~~~~~~~ls~eeL~~L~~~Le~~l~~v~~r~~~l~~~~~  141 (148)
                      .+..++.+++.+++.++... .|.|++.   ++||++||..|+..|+..+..||.|+.++..++-
T Consensus        16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL---~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i   77 (100)
T PF01486_consen   16 ELQQEIAKLRKENESLQKELRHLMGEDL---ESLSLKELQQLEQQLESALKRVRSRKDQLLMEQI   77 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccc---cccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            78888999999999888766 5555455   9999999999999999999999999999877653

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates

Probab=86.00  E-value=1.5  Score=32.63  Aligned_cols=47  Identities=28%  Similarity=0.451  Sum_probs=36.6

Q ss_pred             chHHHhH----HHHHHhhCcceeEEEeCCC---CCCcccCCcchHHHHHHhhhc
Q 032052            9 QGLFKKA----QEYANITGSQIAVLVFSPA---GNPYVHGSPSFDAVIDKFLSV   55 (148)
Q Consensus         9 ~GL~KKa----~ELs~LCg~~vavivfsp~---gk~~~~~~psv~~Vi~ry~~~   55 (148)
                      .-|+.|.    .|++|=+|-++.|++.+|+   +....||....+.|+..|...
T Consensus        35 ~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~~   88 (214)
T PF10491_consen   35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKPV   88 (214)
T ss_pred             HHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHHH
Confidence            3466664    7999999999999999994   244578987788888888765

The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=84.52  E-value=0.29  Score=23.49  Aligned_cols=13  Identities=31%  Similarity=0.708  Sum_probs=10.1

Q ss_pred             eEEEeCCCCCCcc
Q 032052           27 AVLVFSPAGNPYV   39 (148)
Q Consensus        27 avivfsp~gk~~~   39 (148)
                      .+.+|||.|+++.
T Consensus         4 ~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    4 SITTFSPDGRLFQ   16 (23)
T ss_dssp             STTSBBTTSSBHH
T ss_pred             CceeECCCCeEEe
Confidence            3458999999873

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		1e-06
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		4e-05
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		7e-05
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		7e-05
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		7e-05
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		9e-05
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-04
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		1e-04
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-04

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDK 51
          VTFSKR+ G+ KKA E + +TG+Q+ +LV S  G  Y   +P F+ ++ +
Sbjct: 34 VTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQ 83

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN 56
          VTF+KR+ GL KKA E + +  ++IA+++F+ +   + + S   D V+ K+   N
Sbjct: 18 VTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 72

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVI 49
           TFSKR+ G+ KKA E + +TG+Q+ +LV S  G+ Y   +     +I
Sbjct: 28 TTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMI 75

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN 56
          VTF+KR+ GL KKA E + +   +IA+++F+ +   + + S   D V+ K+   N
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 72

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN 56
          VTF+KR+ GL KKA E + +   +IA+++F+ +   + + S   D V+ K+   N
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 72

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
          VTF+KR+ GL KKA E + +   +IA+++F+ A   + + S   D V+ K+
Sbjct: 19 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 69

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
          VTF+KR+ GL KKA E + +   +IA+++F+ A   + + S   D V+ K+
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 68

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVI 49
           TFSKR+ G+ KKA E + +TG+Q+ +LV S  G+ Y   +     +I
Sbjct: 27 TTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMI 74

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
          VTF+KR+ GL KKA E + +   +IA+++F+ +   + + S   D V+ K+
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-17
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-17
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	4e-17
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	2e-13
1egw_A	77	MADS box transcription enhancer factor 2, polypept	3e-13

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 71.4 bits (175), Expect = 2e-17
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN 56
           TFSKR+ G+ KKA E + +TG+Q+ +LV S  G+ Y   +     +I       
Sbjct: 28 TTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKA 82

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 71.8 bits (176), Expect = 2e-17
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN 56
           TFSKR+ G+ KKA E + +TG+Q+ +LV S  G+ Y   +     +I       
Sbjct: 27 TTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKA 81

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 70.6 bits (173), Expect = 4e-17
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNG 57
          VTFSKR+ G+ KKA E + +TG+Q+ +LV S  G  Y   +P F+ ++ +    N 
Sbjct: 34 VTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNL 89

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 60.9 bits (148), Expect = 2e-13
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASS 61
          VTF+KR+ GL KKA E + +   +IA+++F+ +   + + S   D V+ K+   N    S
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHES 77

Query: 62 SGQ 64
             
Sbjct: 78 RTN 80

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 60.1 bits (146), Expect = 3e-13
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 2  VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGASS 61
          VTF+KR+ GL KKA E + +   +IA+++F+ +   + + S   D V+ K+   N    S
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHES 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
1egw_A	77	MADS box transcription enhancer factor 2, polypept	99.97
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	99.97
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.96
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.95
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.95

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=99.97  E-value=5.5e-33  Score=174.09  Aligned_cols=58  Identities=33%  Similarity=0.519  Sum_probs=54.0

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhhhcCCC
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGG   58 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~~~~~~   58 (148)
                      ||||+|||+||||||+||||||||+||+|||||+|++|+|++|+++.|++||...+++
T Consensus        17 ~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~   74 (77)
T 1egw_A           17 QVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred             HHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence            7999999999999999999999999999999999999999999999999999987654

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=99.97  E-value=1.8e-32  Score=175.84  Aligned_cols=60  Identities=32%  Similarity=0.498  Sum_probs=56.9

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhhhcCCCCC
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGAS   60 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~~~~~~~~   60 (148)
                      ||||+|||.||||||+||||||||+||+|||||+|++|+|+||+|+.|++||...+++..
T Consensus        17 ~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~   76 (90)
T 3p57_A           17 QVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHE   76 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCC
T ss_pred             HHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccc
Confidence            799999999999999999999999999999999999999999999999999999776643

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.96  E-value=3.6e-30  Score=167.78  Aligned_cols=54  Identities=39%  Similarity=0.659  Sum_probs=52.2

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhhh
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLS   54 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~~   54 (148)
                      ||||+|||.||||||+||||||||+||+|||||+|++|+|++|++..|+++|..
T Consensus        33 ~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G   86 (100)
T 1mnm_A           33 HVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG   86 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred             hhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence            699999999999999999999999999999999999999999999999999954

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.95  E-value=5.2e-30  Score=164.99  Aligned_cols=53  Identities=36%  Similarity=0.574  Sum_probs=50.9

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhh
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFL   53 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~   53 (148)
                      ||||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||++|.
T Consensus        27 ~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~   79 (92)
T 1hbx_A           27 YTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   79 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred             HHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence            69999999999999999999999999999999999999999999999998764

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.95  E-value=2.2e-29  Score=165.08  Aligned_cols=52  Identities=37%  Similarity=0.593  Sum_probs=50.2

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHh
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF   52 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry   52 (148)
                      ||||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||+++
T Consensus        26 ~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B           26 YTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             HHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            6999999999999999999999999999999999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	4e-20
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-19
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	9e-19

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.1 bits (190), Expect = 4e-20
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 1  MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN 56
           VTFSKR+ G+ KKA E + +TG+Q+ +LV S  G  Y   +P F+ ++ +    N
Sbjct: 19 HVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN 74

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (184), Expect = 2e-19
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 1  MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
           VTF+KR+ GL KKA E + +   +IA+++F+ +   + + S   D V+ K+
Sbjct: 17 QVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (180), Expect = 9e-19
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 1  MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
            TFSKR+ G+ KKA E + +TG+Q+ +LV S  G+ Y   +     +I   
Sbjct: 19 YTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	99.97
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.96
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.96

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-33  Score=171.84  Aligned_cols=54  Identities=33%  Similarity=0.555  Sum_probs=52.6

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhhh
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLS   54 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~~   54 (148)
                      ||||+|||.||||||+|||+||||+||+|||||+|++|+|+||++++|++||..
T Consensus        17 ~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_          17 QVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             eeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            699999999999999999999999999999999999999999999999999975

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.1e-32  Score=169.94  Aligned_cols=55  Identities=38%  Similarity=0.635  Sum_probs=53.3

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhhhc
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSV   55 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~~~   55 (148)
                      ||||+|||.||||||+|||+||||+||+|||||+|++|+|+||+|+.|++||...
T Consensus        19 ~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~   73 (85)
T d1mnma_          19 HVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   73 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             hhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcc
Confidence            6899999999999999999999999999999999999999999999999999864

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-31  Score=167.28  Aligned_cols=54  Identities=35%  Similarity=0.566  Sum_probs=52.4

Q ss_pred             CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhhh
Q 032052            1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLS   54 (148)
Q Consensus         1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~~   54 (148)
                      ||||+|||.||||||+|||+||||+||+|||||+|++|.|+||+++.|+++|..
T Consensus        19 ~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_          19 YTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             hhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999964