Citrus Sinensis ID: 032073

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MLSPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHHcccccHHHccccEEEEccHHHHHHHHHHHHHccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcccccEEEEHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHcccccccHccccHHHHccccccc
Coil and Loop (DISEMBL)
mlspkvlckqesqlVDLRFFSARKHglidcavrndscdrtavvalpggvgtLDEMFEILALIQLErigselpvpflVMNYDSFYKKLLDFLgdcedwgtVAKDEVASLWKICDSNSEALSYLAEFydlssidkrVHEVNLKSTHGIVS
Flexible Loop (DISEMBL)
mlspkvlckqesqLVDLRFFSARKHGLIDcavrndscdrTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Low Complexity Region (SEG)
MLSPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Disordered region (IsUnstruct)
*******CKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEV**********
Disordered Region (DISOPRED)
*LSPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSI*****************
Disordered Region (DISEMBL)
MLSPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Disordered Region (DISPRO)
*LSPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVH************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHGIVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
P47044	245	LOG family protein YJL055	yes	no	0.317	0.191	0.431	0.0008

>sp|P47044|YJF5_YEAST LOG family protein YJL055W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJL055W PE=1 SV=1

 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 41  AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 91
           A VA+PGG GT +E+ E +   QL         P ++ N D FY KLL+FL
Sbjct: 143 AFVAMPGGYGTFEEIMECITWSQLGIHNK----PIILFNIDGFYDKLLEFL 189

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
356527115	305	PREDICTED: probable cytokinin riboside 5	0.878	0.426	0.730	6e-51
225460791	310	PREDICTED: uncharacterized protein LOC10	0.885	0.422	0.740	1e-49
255576280	302	carboxy-lyase, putative [Ricinus communi	0.858	0.420	0.75	2e-49
224100075	226	predicted protein [Populus trichocarpa]	0.75	0.491	0.828	2e-49
357459921	312	hypothetical protein MTR_3g055920 [Medic	0.885	0.419	0.734	2e-49
357459923	312	hypothetical protein MTR_3g055920 [Medic	0.885	0.419	0.734	2e-49
357459925	176	hypothetical protein MTR_3g055920 [Medic	0.885	0.744	0.734	6e-49
242038951	329	hypothetical protein SORBIDRAFT_01g01550	0.817	0.367	0.721	8e-48
449467507	298	PREDICTED: probable cytokinin riboside 5	0.858	0.426	0.692	3e-47
156138540	305	putative lysine decarbxylase [Nicotiana	0.777	0.377	0.747	4e-47

>gi|356527115|ref|XP_003532159.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3-like [Glycine max]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 95/130 (73%), Positives = 111/130 (85%)

Query: 15  VDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVP 74
           +  RFFSARKHGL+D  VRN+S D+TAVVALPGG+GTLDE+FEILALIQLERIGS+ PVP
Sbjct: 171 LTFRFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDEVFEILALIQLERIGSKFPVP 230

Query: 75  FLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKR 134
           FL+MNYDSFY KLL+FL DCE WGTV+K EVASLWK+C+SNSEAL+YL EFY +SS DK 
Sbjct: 231 FLLMNYDSFYSKLLEFLNDCEGWGTVSKGEVASLWKVCNSNSEALAYLEEFYGISSSDKS 290

Query: 135 VHEVNLKSTH 144
            +   L ST+
Sbjct: 291 KNVTKLYSTY 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460791|ref|XP_002276560.1| PREDICTED: uncharacterized protein LOC100243479 [Vitis vinifera] gi|297737525|emb|CBI26726.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/131 (74%), Positives = 109/131 (83%)

Query: 18  RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 77
           RFFSARKHGL+D AVR+ +CDRTAVVALPGG+GTLDE+FEILALIQL+RIGSELPVPFL+
Sbjct: 171 RFFSARKHGLVDAAVRSCNCDRTAVVALPGGIGTLDEVFEILALIQLQRIGSELPVPFLL 230

Query: 78  MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHE 137
           MNYDSFY KLLDFL D E WGTV K EV SLWK+C++NSEALSYLAEFYDL   D    E
Sbjct: 231 MNYDSFYSKLLDFLSDSECWGTVCKGEVESLWKVCNNNSEALSYLAEFYDLPLGDNGKCE 290

Query: 138 VNLKSTHGIVS 148
             L +  G +S
Sbjct: 291 TGLATASGPIS 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576280|ref|XP_002529033.1| carboxy-lyase, putative [Ricinus communis] gi|223531513|gb|EEF33344.1| carboxy-lyase, putative [Ricinus communis]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/128 (75%), Positives = 108/128 (84%), Gaps = 1/128 (0%)

Query: 18  RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 77
           RFFSARKHGL+D AVRN   DRTAVVALPGG+GTLDEMFEILALIQLERIGS LPVPF+V
Sbjct: 175 RFFSARKHGLVDAAVRNTRSDRTAVVALPGGIGTLDEMFEILALIQLERIGSALPVPFIV 234

Query: 78  MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL-SSIDKRVH 136
           MNYDSFY+KLLDF+ +CEDWGTV+K EV  LWKIC+SNSEAL+YL +FY+L SS D+  H
Sbjct: 235 MNYDSFYQKLLDFIQNCEDWGTVSKGEVTPLWKICNSNSEALAYLTDFYNLHSSSDEYGH 294

Query: 137 EVNLKSTH 144
                S H
Sbjct: 295 GKMPTSAH 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100075|ref|XP_002311733.1| predicted protein [Populus trichocarpa] gi|222851553|gb|EEE89100.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/111 (82%), Positives = 104/111 (93%)

Query: 18  RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 77
           RFFSARKHGL+D AVR+   DRTAVVALPGG+GTLDEMFEIL LIQL+RIGSELPVPFLV
Sbjct: 115 RFFSARKHGLVDAAVRSSCSDRTAVVALPGGIGTLDEMFEILTLIQLQRIGSELPVPFLV 174

Query: 78  MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 128
           MNYDS+Y+KLLDFLGDCE+WGTV+K EVASLWKIC++NSEAL+YLA+FY L
Sbjct: 175 MNYDSYYQKLLDFLGDCENWGTVSKGEVASLWKICENNSEALAYLADFYGL 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459921|ref|XP_003600242.1| hypothetical protein MTR_3g055920 [Medicago truncatula] gi|355489290|gb|AES70493.1| hypothetical protein MTR_3g055920 [Medicago truncatula]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/132 (73%), Positives = 114/132 (86%), Gaps = 1/132 (0%)

Query: 18  RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 77
           RFFSARKHGL+D  VRN+S D+TAVVALPGG+GTLDE+FE+LALIQLERIGS+LPVPFL+
Sbjct: 181 RFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDELFEMLALIQLERIGSKLPVPFLL 240

Query: 78  MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID-KRVH 136
           MNYDSFY KLLDFL  CED GTV+K EVASLWK+C+SNSEAL+YLA+FY +SS D  +  
Sbjct: 241 MNYDSFYSKLLDFLDVCEDRGTVSKGEVASLWKVCNSNSEALAYLADFYCISSGDISQKK 300

Query: 137 EVNLKSTHGIVS 148
           E  L+STH + S
Sbjct: 301 ETKLQSTHDLPS 312

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459923|ref|XP_003600243.1| hypothetical protein MTR_3g055920 [Medicago truncatula] gi|217074988|gb|ACJ85854.1| unknown [Medicago truncatula] gi|355489291|gb|AES70494.1| hypothetical protein MTR_3g055920 [Medicago truncatula]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/132 (73%), Positives = 114/132 (86%), Gaps = 1/132 (0%)

Query: 18  RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 77
           RFFSARKHGL+D  VRN+S D+TAVVALPGG+GTLDE+FE+LALIQLERIGS+LPVPFL+
Sbjct: 181 RFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDELFEMLALIQLERIGSKLPVPFLL 240

Query: 78  MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID-KRVH 136
           MNYDSFY KLLDFL  CED GTV+K EVASLWK+C+SNSEAL+YLA+FY +SS D  +  
Sbjct: 241 MNYDSFYSKLLDFLDVCEDRGTVSKGEVASLWKVCNSNSEALAYLADFYCISSGDISQKK 300

Query: 137 EVNLKSTHGIVS 148
           E  L+STH + S
Sbjct: 301 ETKLQSTHDLPS 312

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459925|ref|XP_003600244.1| hypothetical protein MTR_3g055920 [Medicago truncatula] gi|355489292|gb|AES70495.1| hypothetical protein MTR_3g055920 [Medicago truncatula]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 97/132 (73%), Positives = 114/132 (86%), Gaps = 1/132 (0%)

Query: 18  RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 77
           RFFSARKHGL+D  VRN+S D+TAVVALPGG+GTLDE+FE+LALIQLERIGS+LPVPFL+
Sbjct: 45  RFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDELFEMLALIQLERIGSKLPVPFLL 104

Query: 78  MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID-KRVH 136
           MNYDSFY KLLDFL  CED GTV+K EVASLWK+C+SNSEAL+YLA+FY +SS D  +  
Sbjct: 105 MNYDSFYSKLLDFLDVCEDRGTVSKGEVASLWKVCNSNSEALAYLADFYCISSGDISQKK 164

Query: 137 EVNLKSTHGIVS 148
           E  L+STH + S
Sbjct: 165 ETKLQSTHDLPS 176

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242038951|ref|XP_002466870.1| hypothetical protein SORBIDRAFT_01g015500 [Sorghum bicolor] gi|241920724|gb|EER93868.1| hypothetical protein SORBIDRAFT_01g015500 [Sorghum bicolor]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 88/122 (72%), Positives = 106/122 (86%), Gaps = 1/122 (0%)

Query: 18  RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 77
           RFFSARKHGL+D AVR+   DRTAVVALPGGVGTLDE+FEI+ALIQLERIGS LPVPFL+
Sbjct: 196 RFFSARKHGLVDAAVRSSPTDRTAVVALPGGVGTLDELFEIMALIQLERIGSALPVPFLL 255

Query: 78  MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHE 137
           +NYDS+Y KLLDFL DC++WGTVA  EV SLWK+CD N EAL YLAEFY++ + D+R ++
Sbjct: 256 LNYDSYYSKLLDFLNDCQEWGTVAPGEVESLWKVCDGNHEALEYLAEFYNVPA-DQRNYQ 314

Query: 138 VN 139
           ++
Sbjct: 315 IS 316

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467507|ref|XP_004151464.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9-like [Cucumis sativus] gi|449524603|ref|XP_004169311.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9-like [Cucumis sativus]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/127 (69%), Positives = 107/127 (84%)

Query: 18  RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 77
           RFFSARKHGL+D AVR+ S DRTA V LPGG+GT DE+FEILALIQL RIGS+LPVPFL+
Sbjct: 172 RFFSARKHGLVDAAVRSCSSDRTAFVTLPGGIGTFDEVFEILALIQLRRIGSKLPVPFLL 231

Query: 78  MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHE 137
           MNYDSFY KLL+F  DCE+WGT+AK EV SLWK+CD+N++A++YL+ FY L   D+  +E
Sbjct: 232 MNYDSFYSKLLEFFNDCENWGTLAKGEVDSLWKVCDNNADAVAYLSSFYSLCDQDRVKNE 291

Query: 138 VNLKSTH 144
           V L+STH
Sbjct: 292 VGLESTH 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156138540|emb|CAO91858.1| putative lysine decarbxylase [Nicotiana tabacum]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 103/115 (89%)

Query: 18  RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 77
           RFFSARKHGL+D  VR  S +RTAVVALPGG+GTLDE+FEI+ALIQLERIGS+LPVPFL+
Sbjct: 176 RFFSARKHGLVDAVVRCKSSERTAVVALPGGIGTLDEIFEIMALIQLERIGSQLPVPFLL 235

Query: 78  MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 132
           MNYDSFY  LL+FL DCE WGTV+K+EV+SLWK+C++NSEAL+YL EFY LS ++
Sbjct: 236 MNYDSFYSNLLEFLNDCEKWGTVSKNEVSSLWKVCNNNSEALAYLTEFYGLSPVE 290

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:505006177	306	AT1G50575 "AT1G50575" [Arabido	0.844	0.408	0.658	9.3e-43
TIGR_CMR|GSU_1904	342	GSU_1904 "decarboxylase family	0.75	0.324	0.28	2.2e-07
TIGR_CMR|SPO_3342	291	SPO_3342 "decarboxylase family	0.513	0.261	0.341	1.5e-06
UNIPROTKB|Q0BZM4	250	HNE_2374 "Putative uncharacter	0.479	0.284	0.367	6.4e-06
CGD|CAL0000804	222	orf19.1723 [Candida albicans (	0.554	0.369	0.340	1.5e-05
UNIPROTKB|Q5AJ69	222	CaO19.1723 "Putative uncharact	0.554	0.369	0.340	1.5e-05
TIGR_CMR|GSU_2766	196	GSU_2766 "decarboxylase family	0.297	0.224	0.437	0.00028
TAIR|locus:2039175	213	LOG2 "AT2G35990" [Arabidopsis	0.540	0.375	0.372	0.00052
UNIPROTKB|Q5ZC82	242	LOG "Cytokinin riboside 5'-mon	0.398	0.243	0.412	0.00071
TAIR|locus:2164280	217	LOG7 "AT5G06300" [Arabidopsis	0.385	0.262	0.409	0.00076

TAIR|locus:505006177 AT1G50575 "AT1G50575" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 83/126 (65%), Positives = 106/126 (84%)

Query:    18 RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 77
             RFFSARKHGL+D  +RN+  ++TA++ALPGG+GTLDEMFEILALIQLERIGS LPVPF+V
Sbjct:   177 RFFSARKHGLVDAVIRNNVSEKTAIIALPGGIGTLDEMFEILALIQLERIGSALPVPFIV 236

Query:    78 MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHE 137
             MNYD+FY KLL+F+  CE+ GTV+K EV++LWK+C++N EAL+YLAEFYDL     ++ E
Sbjct:   237 MNYDAFYSKLLEFIETCENLGTVSKGEVSALWKVCNNNFEALTYLAEFYDLPDGSAKL-E 295

Query:   138 VNLKST 143
               L+ T
Sbjct:   296 TELRKT 301

GO:0008152 "metabolic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016831 "carboxy-lyase activity" evidence=ISS

TIGR_CMR|GSU_1904 GSU_1904 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 125 (49.1 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 35/125 (28%), Positives = 59/125 (47%)

Query:     4 PKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 63
             P  +  Q  +L++ ++F  RK   +         +  A+   PGG GTLDE  E+  LIQ
Sbjct:   144 PNPVMLQNPRLINYKYFFNRKVAFVK--------ESNAIAVFPGGFGTLDEAMEVFTLIQ 195

Query:    64 LERIGSELPVPF-LVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALSY 121
                 G   P P  L+ + D ++ +  DF+  C    G ++ ++  S++ I     EA+  
Sbjct:   196 T---GKTSPKPLVLIDDSDGYWDRWFDFVTSCILGKGFISAEDF-SIFTITRDEDEAIRV 251

Query:   122 LAEFY 126
             + EFY
Sbjct:   252 IEEFY 256

GO:0008152 "metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=ISS

TIGR_CMR|SPO_3342 SPO_3342 "decarboxylase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 116 (45.9 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 28/82 (34%), Positives = 50/82 (60%)

Query:    41 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
             A+   PGG GTLDE+FE L LIQ  R+     VPFL+   + F+++++++     D GT+
Sbjct:   201 AITIFPGGFGTLDELFESLTLIQTGRMER---VPFLLFGRE-FWERVINWRA-LADAGTI 255

Query:   101 AKDEVASLWKICDSNSEALSYL 122
             + +++  L++  D+  EA+  +
Sbjct:   256 SAEDL-DLFRFVDTAQEAVEII 276

GO:0008152 "metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=ISS

UNIPROTKB|Q0BZM4 HNE_2374 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 109 (43.4 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 29/79 (36%), Positives = 47/79 (59%)

Query:    41 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD-SFYKKLLDFLGDCEDWGT 99
             A+V  PGG GT+DE+FE+L L Q  + G  +PV   V+ YD  F+ ++++F     D G 
Sbjct:   164 ALVIFPGGFGTMDELFELLTLSQTGK-GHHMPV---VL-YDRDFWTRIINFEA-LADAGV 217

Query:   100 VAKDEVASLWKICDSNSEA 118
             ++ D++  L++  D   EA
Sbjct:   218 ISPDDL-KLFEFADDPEEA 235

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0000804 orf19.1723 [Candida albicans (taxid:5476)]

 Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 30/88 (34%), Positives = 49/88 (55%)

Query:    41 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
             A VALPGG+G++DE+ EI    QL   G  + V  +   YD+F+K +  F+ DC   G +
Sbjct:   129 AFVALPGGIGSIDELAEITTWCQLNIHGKPIVVYNVDGYYDNFFKMIQGFV-DC---GFL 184

Query:   101 AKDEVASLWKICDSNSEALSYLAEFYDL 128
             ++     + K+ +S  E L  + E Y++
Sbjct:   185 SEKN-GQIIKVANSVEEVLEII-ENYEI 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0014074 "response to purine-containing compound" evidence=IEA

UNIPROTKB|Q5AJ69 CaO19.1723 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 30/88 (34%), Positives = 49/88 (55%)

Query:    41 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
             A VALPGG+G++DE+ EI    QL   G  + V  +   YD+F+K +  F+ DC   G +
Sbjct:   129 AFVALPGGIGSIDELAEITTWCQLNIHGKPIVVYNVDGYYDNFFKMIQGFV-DC---GFL 184

Query:   101 AKDEVASLWKICDSNSEALSYLAEFYDL 128
             ++     + K+ +S  E L  + E Y++
Sbjct:   185 SEKN-GQIIKVANSVEEVLEII-ENYEI 210

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|GSU_2766 GSU_2766 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 101 (40.6 bits), Expect = 0.00028, P = 0.00028
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query:    43 VALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF 90
             +ALPGG+GT++E  E+L  +QL   G     P  ++N D +Y +LLDF
Sbjct:   102 IALPGGIGTIEEFVEVLTWLQLGIHGK----PCGLLNSDGYYDRLLDF 145

GO:0008152 "metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=ISS

TAIR|locus:2039175 LOG2 "AT2G35990" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00052, P = 0.00052
 Identities = 32/86 (37%), Positives = 43/86 (50%)

Query:    41 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
             A +ALPGG GT +E+ E++   QL  I ++ PV  L  N D FY  LL F+    D G V
Sbjct:   107 AFIALPGGYGTFEELLEVITWSQLG-IHTK-PVGLL--NVDGFYDSLLTFIDKAVDEGFV 162

Query:   101 AKDEVASLWKICDSNSEALSYLAEFY 126
             +    A    +   N+  L  L E Y
Sbjct:   163 SS--TARRIIVSAPNAPQLLQLLEEY 186

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q5ZC82 LOG "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 100 (40.3 bits), Expect = 0.00071, P = 0.00071
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query:    41 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
             A +ALPGG GTL+E+ E++   QL  I  + PV  L  N D FY   L F+      G +
Sbjct:   134 AFIALPGGYGTLEELLEVITWAQLG-IHKK-PVGLL--NVDGFYDPFLSFIDMAVSEGFI 189

Query:   101 AKD 103
             A+D
Sbjct:   190 AED 192

GO:0009691 "cytokinin biosynthetic process" evidence=IDA

GO:0048509 "regulation of meristem development" evidence=IMP

TAIR|locus:2164280 LOG7 "AT5G06300" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00076, P = 0.00076
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query:    41 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
             A +ALPGG GTL+E+ E++   QL  I  + PV  L  N D +Y  LL F+    D G +
Sbjct:   107 AFIALPGGYGTLEELLEVITWAQLG-IHRK-PVGLL--NVDGYYNSLLTFIDKAVDEGFI 162

Query:   101 A 101
             +
Sbjct:   163 S 163


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      148       148   0.00068  104 3  11 22  0.44    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  150 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.85u 0.13s 13.98t   Elapsed:  00:00:01
  Total cpu time:  13.85u 0.13s 13.98t   Elapsed:  00:00:01
  Start:  Fri May 10 14:07:32 2013   End:  Fri May 10 14:07:33 2013

GO:0008152 "metabolic process" evidence=ISS

GO:0016831 "carboxy-lyase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.588.1 hypothetical protein (226 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
pfam03641	130	pfam03641, Lysine_decarbox, Possible lysine decarb	2e-22
COG1611	205	COG1611, COG1611, Predicted Rossmann fold nucleoti	3e-12
TIGR00730	178	TIGR00730, TIGR00730, TIGR00730 family protein	3e-09

>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase

 Score = 85.3 bits (212), Expect = 2e-22
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 13/110 (11%)

Query: 12  SQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSEL 71
           ++L+ +     RK  +   A         A VALPGG GTL+E+FEIL  IQL       
Sbjct: 34  TELIIVPDMHERKAAMARLA--------DAFVALPGGFGTLEELFEILTWIQLGIH---- 81

Query: 72  PVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 121
             P +++N + +Y  LL+F+    + G ++      L  + D   EA+  
Sbjct: 82  QKPIILLNPNGYYDPLLEFIDHMVEEGFISP-AARELIIVVDDPEEAVEK 130

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. Length = 130

>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)

Query: 20  FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 79
           F+ RK  ++       S D  A + LPGG GTL+E+FE L L Q       L  P L++N
Sbjct: 100 FAERKRAMVR------SAD--AFIVLPGGFGTLEELFEALTLGQTGVHA--LTPPPLILN 149

Query: 80  YDSFYKKLLDFLGDCEDWGTVA-KDEVASLWKICDSNSEALSYLAEFY 126
            + F++ LL+FL D          +    L  + D   EA+  + ++ 
Sbjct: 150 GNGFWEPLLEFL-DPHLIVEGLISEADRELLIVVDDAEEAIDAILKYL 196

Length = 205

>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 2   LSPKVLCKQE------SQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 55
           ++P  L   E      ++L+++     RK  + + A         A +A+PGG GTL+E+
Sbjct: 62  VNPSGLFSGEVVHQNLTELIEVNGMHERKAMMAELA--------DAFIAMPGGFGTLEEL 113

Query: 56  FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 115
           FE+L   QL   G       L  N +  +  L+++L      G +++  +  L  +    
Sbjct: 114 FEVLTWAQL---GIHQKPIILF-NVNGHFDGLVEWLKYSIQEGFISESHL-KLIHVVSRP 168

Query: 116 SEAL 119
            E +
Sbjct: 169 DELI 172

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by This model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions [Hypothetical proteins, Conserved]. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
PF03641	133	Lysine_decarbox: Possible lysine decarboxylase; In	100.0
TIGR00730	178	conserved hypothetical protein, DprA/Smf-related,	100.0
COG1611	205	Predicted Rossmann fold nucleotide-binding protein	99.93
TIGR00725	159	conserved hypothetical protein, DprA/Smf-related,	99.86
PF13528	318	Glyco_trans_1_3: Glycosyl transferase family 1	85.31

>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway

Probab=100.00  E-value=6.6e-34  Score=213.88  Aligned_cols=105  Identities=38%  Similarity=0.670  Sum_probs=96.0

Q ss_pred             CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073            3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS   82 (148)
Q Consensus         3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g   82 (148)
                      .||+++|   +.+.+++|++||..|++.|        ||||+||||+|||||+|++|+|.|+|.+   .++|++|+|.+|
T Consensus        29 ~~~~~~~---~~~~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTl~El~~~~~~~~l~~~---~~~Piil~~~~g   94 (133)
T PF03641_consen   29 PPNPYVT---ELIIVDDMFERKEIMIESS--------DAFIALPGGIGTLDELFEALTLMQLGRH---NKVPIILLNIDG   94 (133)
T ss_dssp             TCCTTSS---EEEEESSHHHHHHHHHHHE--------SEEEEES-SHHHHHHHHHHHHHHHTTSS---TS-EEEEEECGG
T ss_pred             cCCcccC---ceeEeCChHHHHHHHHHhC--------CEEEEEecCCchHHHHHHHHHHHhhccc---cCCCEEEeCCcc
Confidence            3689998   7799999999999999986        9999999999999999999999999987   355999999999


Q ss_pred             chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHH
Q 032073           83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL  122 (148)
Q Consensus        83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L  122 (148)
                      ||+++++|+++|+++||+++++. +++.++||++|++++|
T Consensus        95 ~w~~l~~~l~~~~~~g~i~~~~~-~~~~~~d~~~e~~~~i  133 (133)
T PF03641_consen   95 FWDPLLEFLDRMIEEGFISPDDL-DLLHFVDDPEEALEYI  133 (133)
T ss_dssp             CCHHHHHHHHHHHHTTSSSHHHH-CCEEEESSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCCCHHHC-CeEEEeCCHHHHHhhC
Confidence            99999999999999999999875 7999999999999975

It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....

>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2

Probab=100.00  E-value=2.5e-33  Score=220.97  Aligned_cols=106  Identities=24%  Similarity=0.449  Sum_probs=99.4

Q ss_pred             CccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccc
Q 032073            4 PKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF   83 (148)
Q Consensus         4 ~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gf   83 (148)
                      +|++++   ..+.+.+|++||..|++.|        ||||+||||+|||||++|+|||.|+|.|    +||++++|++||
T Consensus        73 ~~~~~~---~~i~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTL~El~e~~~~~qlg~~----~kPiil~n~~g~  137 (178)
T TIGR00730        73 VHQNLT---ELIEVNGMHERKAMMAELA--------DAFIAMPGGFGTLEELFEVLTWAQLGIH----QKPIILFNVNGH  137 (178)
T ss_pred             cCCCCC---ceEEECCHHHHHHHHHHhC--------CEEEEcCCCcchHHHHHHHHHHHHcCCC----CCCEEEECCcch
Confidence            689998   6799999999999999975        9999999999999999999999999976    789999999999


Q ss_pred             hHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhh
Q 032073           84 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF  125 (148)
Q Consensus        84 wd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~  125 (148)
                      |++|++|+++|+++||+++++. +++.++||++|++++|++|
T Consensus       138 ~~~l~~~l~~~~~~gfi~~~~~-~~~~~~d~~~e~~~~i~~~  178 (178)
T TIGR00730       138 FDGLVEWLKYSIQEGFISESHL-KLIHVVSRPDELIEQVQNY  178 (178)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHc-CcEEEcCCHHHHHHHHHhC
Confidence            9999999999999999999774 8999999999999999763

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.

>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=6.5e-26  Score=182.51  Aligned_cols=111  Identities=31%  Similarity=0.495  Sum_probs=100.6

Q ss_pred             CccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccc
Q 032073            4 PKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF   83 (148)
Q Consensus         4 ~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gf   83 (148)
                      ||++.+   +++++.+|+.||..|+++|        ||||++|||+||+||+||+|||.|+|.+.  ..+|++++|.++|
T Consensus        87 ~~~~~~---~l~~~~~~~~Rk~~~~~~a--------da~V~~pGG~GTleEl~e~lt~~q~g~~~--l~~~~~i~~~~~~  153 (205)
T COG1611          87 PNYEVI---ELITGMDFAERKRAMVRSA--------DAFIVLPGGFGTLEELFEALTLGQTGVHA--LTPPPLILNGNGF  153 (205)
T ss_pred             Cccccc---eeeecCCHHHHHHHHHHhC--------CEEEEeCCCcchHHHHHHHHHHhhCCccc--CCCCcEEecchHH
Confidence            555555   8899999999999999987        99999999999999999999999999874  3678888999999


Q ss_pred             hHHHHHHHH-HHHHcCCCChhhcccceEEeCCHHHHHHHHHhhhcc
Q 032073           84 YKKLLDFLG-DCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL  128 (148)
Q Consensus        84 wd~L~~~l~-~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~~~~  128 (148)
                      |+++.+|++ +++.+|++++.+ .+.++++||++++++.+.++...
T Consensus       154 ~~~~~~~~d~~~i~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~  198 (205)
T COG1611         154 WEPLLEFLDPHLIVEGLISEAD-RELLIVVDDAEEAIDAILKYLPP  198 (205)
T ss_pred             HHHHHHHhCHHHHHhhcCChhh-hhheeeecCHHHHHHHHHHhccc
Confidence            999999999 899999999976 58899999999999999998764

>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1

Probab=99.86  E-value=2.1e-21  Score=150.48  Aligned_cols=92  Identities=20%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073            3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS   82 (148)
Q Consensus         3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g   82 (148)
                      .+|++++   ..+....++.||..|++.+        ||||++|||+|||||++|+|+      +    +||++++|.+|
T Consensus        67 ~~~~~~~---~~i~~~~~~~Rk~~m~~~s--------da~IvlpGG~GTL~E~~~a~~------~----~kpv~~l~~~g  125 (159)
T TIGR00725        67 AGNPYLT---IKVKTGMNFARNFILVRSA--------DVVVSVGGGYGTAIEILGAYA------L----GGPVVVLRGTG  125 (159)
T ss_pred             cCCCCce---EEEECCCcchHHHHHHHHC--------CEEEEcCCchhHHHHHHHHHH------c----CCCEEEEECCC
Confidence            4677776   3455667788999999986        999999999999999999998      2    58999999999


Q ss_pred             chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHH
Q 032073           83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL  122 (148)
Q Consensus        83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L  122 (148)
                      ||+++++++  +.+.+|+ +    +.+.+++|++|+++++
T Consensus       126 ~~~~~l~~~--~~~~~~~-~----~~~~~~~~~~e~~~~~  158 (159)
T TIGR00725       126 GWTDRLSQV--LIEGVYL-D----ERVIVEITPAEAVKLA  158 (159)
T ss_pred             cchHHHHHH--Hhccccc-c----ceeEecCCHHHHHHhh
Confidence            999998865  4454443 3    2478999999999864

This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.

>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1

Probab=85.31  E-value=7.7  Score=31.48  Aligned_cols=85  Identities=20%  Similarity=0.199  Sum_probs=51.4

Q ss_pred             CceeeechHH-HhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHH
Q 032073           12 SQLVDLRFFS-ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF   90 (148)
Q Consensus        12 ~~~~~~~~f~-~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~   90 (148)
                      ...+++..|. .....++..        +|++|.. ||++|+-|...      +       .||++++-..++++....-
T Consensus       231 ~~ni~~~~~~~~~~~~~m~~--------ad~vIs~-~G~~t~~Ea~~------~-------g~P~l~ip~~~~~EQ~~~a  288 (318)
T PF13528_consen  231 PGNIHVRPFSTPDFAELMAA--------ADLVISK-GGYTTISEALA------L-------GKPALVIPRPGQDEQEYNA  288 (318)
T ss_pred             CCCEEEeecChHHHHHHHHh--------CCEEEEC-CCHHHHHHHHH------c-------CCCEEEEeCCCCchHHHHH
Confidence            3456666664 555555554        4877776 78899776542      2       5799999876777766442


Q ss_pred             HHHHHHcCCCChhhcccceEEeCCHHHHHHHHHh
Q 032073           91 LGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE  124 (148)
Q Consensus        91 l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~  124 (148)
                       +.+.+.|....     +-.-.-+++.+-++|++
T Consensus       289 -~~l~~~G~~~~-----~~~~~~~~~~l~~~l~~  316 (318)
T PF13528_consen  289 -RKLEELGLGIV-----LSQEDLTPERLAEFLER  316 (318)
T ss_pred             -HHHHHCCCeEE-----cccccCCHHHHHHHHhc
Confidence             44666664321     00112267777777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
1wek_A	217	Crystal Structure Of The Conserved Hypothetical Pro		1e-05
2a33_A	215	X-Ray Structure Of A Lysine Decarboxylase-Like Prot		2e-04

>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1465 From Thermus Thermophilus Hb8 Length = 217

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 11  ESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSE 70
           ++  + LR+F  RK   +  AV          V LPGG GTLDE+ E+L L+Q E++   
Sbjct: 112 QTHALSLRYFFVRKVLFVRYAV--------GFVFLPGGFGTLDELSEVLVLLQTEKV-HR 162
Query: 71  LPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 122
            PV  L   Y   ++ L+ +L    D   V  +++  L+++ D   E +  L
Sbjct: 163 FPVFLLDRGY---WEGLVRWLAFLRDQKAVGPEDL-QLFRLTDEPEEVVQAL 210

>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At2g37210 Length = 215

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41  AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
           A +ALPGG GTL+E+ E++   QL         P  ++N D +Y  LL F+    + G +
Sbjct: 112 AFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFI 167
Query: 101 A 101
           +
Sbjct: 168 S 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
1wek_A	217	Hypothetical protein TT1465; rossman fold, structu	2e-22
1weh_A	171	Conserved hypothetical protein TT1887; rossman fol	1e-17
1t35_A	191	Hypothetical protein YVDD, putative lysine decarbo	6e-16
3sbx_A	189	Putative uncharacterized protein; structural genom	9e-16
1ydh_A	216	AT5G11950; structural genomics, protein structure	2e-15
2a33_A	215	Hypothetical protein; structural genomics, protein	2e-15
3qua_A	199	Putative uncharacterized protein; structural genom	4e-15
1rcu_A	195	Conserved hypothetical protein VT76; structural ge	1e-13
3gh1_A	462	Predicted nucleotide-binding protein; structural g	2e-13
3bq9_A	460	Predicted rossmann fold nucleotide-binding domain	1e-11
2iz6_A	176	Molybdenum cofactor carrier protein; metal transpo	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Length = 217

 Score = 87.7 bits (218), Expect = 2e-22
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 12  SQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSEL 71
           +  + LR+F  RK   +  AV          V LPGG GTLDE+ E+L L+Q E++    
Sbjct: 113 THALSLRYFFVRKVLFVRYAV--------GFVFLPGGFGTLDELSEVLVLLQTEKVH--- 161

Query: 72  PVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 126
             P  +++   +++ L+ +L    D   V  +++  L+++ D   E +  L    
Sbjct: 162 RFPVFLLD-RGYWEGLVRWLAFLRDQKAVGPEDL-QLFRLTDEPEEVVQALKAEA 214

>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Length = 171

 Score = 74.2 bits (183), Expect = 1e-17
 Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 21/114 (18%)

Query: 12  SQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSEL 71
              +       R   L+D             +ALPGGVGTL E+     L+ L R     
Sbjct: 79  DLELPAATLPQRIGRLLDLGA--------GYLALPGGVGTLAELVLAWNLLYLRRG---- 126

Query: 72  PVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 125
                 +  D ++  LL   G           E   L ++     +   +L   
Sbjct: 127 --VGRPLAVDPYWLGLLKAHG-------EIAPEDVGLLRVVADEEDLRRFLRSL 171

>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Length = 191

 Score = 69.9 bits (172), Expect = 6e-16
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 41  AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
             +++PGG GT +E+FE+L   Q+         P  + N + +++ ++  +      G  
Sbjct: 100 GFISMPGGFGTYEELFEVLCWAQIGIHQK----PIGLYNVNGYFEPMMKMVKYSIQEG-F 154

Query: 101 AKDEVASLWKICDSNSEALSYLAEF 125
           + +    L        E +  +  +
Sbjct: 155 SNESHLKLIHSSSRPDELIEQMQNY 179

>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Length = 189

 Score = 69.6 bits (171), Expect = 9e-16
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 41  AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
           A + LPGGVGTLDE+ ++     L           +V++    +  L  +L +  D G V
Sbjct: 111 AFITLPGGVGTLDELLDVWTEGYLGMHDK----SIVVLDPWGHFDGLRAWLSELADTGYV 166

Query: 101 AKDEVASLWKICDSNSEALSYLA 123
                     + D+  +AL   A
Sbjct: 167 -SRTAMERLIVVDNLDDALQACA 188

>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Length = 216

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 41  AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
           A +ALPGG GT++E+ E++   QL            ++N D +Y  LL       + G +
Sbjct: 108 AFIALPGGYGTMEELLEMITWSQLGIHKK----TVGLLNVDGYYNNLLALFDTGVEEGFI 163

Query: 101 AKDEVASLWKICDSNSEALSYLAEF 125
            K    ++     +  E +  + E+
Sbjct: 164 -KPGARNIVVSAPTAKELMEKMEEY 187

>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Length = 215

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 41  AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
           A +ALPGG GTL+E+ E++   QL         P  ++N D +Y  LL F+    + G +
Sbjct: 112 AFIALPGGYGTLEELLEVITWAQLGIHDK----PVGLLNVDGYYNSLLSFIDKAVEEGFI 167

Query: 101 AKDEVASLWKICDSNSEALSYLAEF 125
                  +     +  E +  L E+
Sbjct: 168 -SPTAREIIVSAPTAKELVKKLEEY 191

>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Length = 199

 Score = 67.6 bits (166), Expect = 4e-15
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 41  AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 100
           A +ALPGG+GTL+E FE      L         P ++++    Y  LL +L      G V
Sbjct: 120 AFIALPGGIGTLEEFFEAWTAGYLGMHDK----PLILLDPFGHYDGLLTWLRGLVPTGYV 175

Query: 101 AKDEVASLWKICDSNSEALSYLA 123
                     + D+   AL   A
Sbjct: 176 -SQRAMDSLVVVDNVEAALEACA 197

>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Length = 195

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 21/107 (19%)

Query: 20  FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 79
           F  R   L+  A          VV++ G +GT  E+    AL +          P +++ 
Sbjct: 108 FQMRSFVLLRNAD--------VVVSIGGEIGTAIEILGAYALGK----------PVILLR 149

Query: 80  YDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 126
               +   +  +    D   +    +        +  EA+  + +  
Sbjct: 150 GTGGWTDRISQV--LIDGKYLDNRRI-VEIHQAWTVEEAVQIIEQIL 193

>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Length = 462

 Score = 65.4 bits (159), Expect = 2e-13
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 17/119 (14%)

Query: 12  SQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSEL 71
           ++LV +     R    +  A          ++  PGG GT +E+  IL ++      ++ 
Sbjct: 229 NELVIMPDIEKRLEAFVRMAH--------GIIIFPGGPGTAEELLYILGIMMHPEN-ADQ 279

Query: 72  PVPFLVM---NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 127
           P+P ++      +++++ L  F+ D     T+ +          D+ +EA   ++    
Sbjct: 280 PMPIVLTGPKQSEAYFRSLDKFITD-----TLGEAARKHYSIAIDNPAEAARIMSNAMP 333

>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Length = 460

 Score = 60.4 bits (146), Expect = 1e-11
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 12  SQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSEL 71
           ++LV L     R    + CA          +V  PGG GT +E+  +L ++         
Sbjct: 227 NELVILPDIEKRLEAFVRCAH--------GIVIFPGGAGTAEELLYLLGILMHPD-NQRQ 277

Query: 72  PVPFLVM---NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 127
            +P ++    +   +++ L +F+G      T+  +       I D  +    ++     
Sbjct: 278 SLPVILTGPASSRDYFEALDEFIG-----ATIGDEARQLYKIIIDDPAAVAQHMHAGMA 331

>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Length = 176

 Score = 56.5 bits (137), Expect = 5e-11
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 31/113 (27%)

Query: 14  LVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPV 73
            +     SAR +          S +   +VA+  G GT  E+   L              
Sbjct: 91  PIVTGLGSARDNINAL------SSN--VLVAVGMGPGTAAEVALALK----------AKK 132

Query: 74  PFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 126
           P +++      +K    L                L  +    + A++ + +  
Sbjct: 133 PVVLLGTQPEAEKFFTSLDA-------------GLVHVAADVAGAIAAVKQLL 172

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 26/146 (17%)

Query: 3   SPKVL------CKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 56
           + K        CK    L+     + R   + D  +   +    ++      + T DE+ 
Sbjct: 255 NAKAWNAFNLSCKI---LL-----TTRFKQVTD-FLSAATTTHISLDHHSMTL-TPDEVK 304

Query: 57  EILALIQLERIGSELPV------PFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWK 110
            +L    L+    +LP       P  +       + + D L   ++W  V  D++ ++ +
Sbjct: 305 SLLLKY-LDCRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 111 ICDSNSEALSYLAEFYDLSSIDKRVH 136
              +  E   Y   F  LS      H
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAH 386

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
3sbx_A	189	Putative uncharacterized protein; structural genom	100.0
3qua_A	199	Putative uncharacterized protein; structural genom	100.0
1t35_A	191	Hypothetical protein YVDD, putative lysine decarbo	100.0
1ydh_A	216	AT5G11950; structural genomics, protein structure	100.0
2a33_A	215	Hypothetical protein; structural genomics, protein	99.97
1wek_A	217	Hypothetical protein TT1465; rossman fold, structu	99.97
3gh1_A	462	Predicted nucleotide-binding protein; structural g	99.96
1weh_A	171	Conserved hypothetical protein TT1887; rossman fol	99.95
3bq9_A	460	Predicted rossmann fold nucleotide-binding domain	99.95
1rcu_A	195	Conserved hypothetical protein VT76; structural ge	99.88
2iz6_A	176	Molybdenum cofactor carrier protein; metal transpo	99.78
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	81.75
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	81.15

>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}

Probab=100.00  E-value=4.6e-35  Score=231.93  Aligned_cols=105  Identities=27%  Similarity=0.330  Sum_probs=98.8

Q ss_pred             CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073            3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS   82 (148)
Q Consensus         3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g   82 (148)
                      .||++++   +.+.++||++||.+|++.|        ||||+||||+|||||+||+|||.|+|+|    +|||+|+|.+|
T Consensus        84 ~~~~~~~---~~i~~~~~~~Rk~~m~~~s--------da~IalPGG~GTLdElfe~lt~~qlg~~----~kPvvlln~~g  148 (189)
T 3sbx_A           84 LADHDAD---ELVVTETMWERKQVMEDRA--------NAFITLPGGVGTLDELLDVWTEGYLGMH----DKSIVVLDPWG  148 (189)
T ss_dssp             TBCTTCS---EEEEESSHHHHHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHHHHTTSC----CCCEEEECTTC
T ss_pred             cCCCCCC---eeEEcCCHHHHHHHHHHHC--------CEEEEeCCCcchHHHHHHHHHHHHhccc----CCCEEEecCCc
Confidence            4899998   7799999999999999986        9999999999999999999999999875    79999999999


Q ss_pred             chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHH
Q 032073           83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA  123 (148)
Q Consensus        83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~  123 (148)
                      ||++|++|+++|+++|||++++. +++.++||++|+++.|+
T Consensus       149 fw~~l~~~l~~~~~~Gfi~~~~~-~~i~~~d~~ee~~~~l~  188 (189)
T 3sbx_A          149 HFDGLRAWLSELADTGYVSRTAM-ERLIVVDNLDDALQACA  188 (189)
T ss_dssp             TTHHHHHHHHHHHHTTSSCHHHH-HHEEEESSHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHCCCCCHHHc-CeEEEeCCHHHHHHHhc
Confidence            99999999999999999999874 89999999999999874

>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}

Probab=100.00  E-value=2.4e-34  Score=229.37  Aligned_cols=105  Identities=27%  Similarity=0.354  Sum_probs=98.6

Q ss_pred             CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073            3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS   82 (148)
Q Consensus         3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g   82 (148)
                      .||++++   +.+.+++|++||.+|++.|        ||||+||||+|||||+||+|||.|+|+|    +|||+|+|.+|
T Consensus        93 ~~~~~~~---~~i~~~~~~~Rk~~m~~~s--------da~IalPGG~GTldEl~e~lt~~qlg~~----~kPvvlln~~g  157 (199)
T 3qua_A           93 LADVDAA---ELIVTDTMRERKREMEHRS--------DAFIALPGGIGTLEEFFEAWTAGYLGMH----DKPLILLDPFG  157 (199)
T ss_dssp             TBCTTSS---EEEEESSHHHHHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHHHHTTSC----CCCEEEECTTS
T ss_pred             ccCCCCC---eeEEcCCHHHHHHHHHHhc--------CccEEeCCCccHHHHHHHHHHHHHhccC----CCCEEEEcCCc
Confidence            4788888   7899999999999999986        9999999999999999999999999875    78999999999


Q ss_pred             chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHH
Q 032073           83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA  123 (148)
Q Consensus        83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~  123 (148)
                      ||++|++|+++|+++|||++++. +++.++||++|+++.|+
T Consensus       158 fw~~l~~~l~~~~~~Gfi~~~~~-~~i~~~d~~~e~~~~l~  197 (199)
T 3qua_A          158 HYDGLLTWLRGLVPTGYVSQRAM-DSLVVVDNVEAALEACA  197 (199)
T ss_dssp             TTHHHHHHHHHTTTTTSSCHHHH-HTSEEESSHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHCCCCCHHHC-CeEEEeCCHHHHHHHHh
Confidence            99999999999999999999875 78999999999999985

>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1

Probab=100.00  E-value=4e-34  Score=225.84  Aligned_cols=116  Identities=17%  Similarity=0.304  Sum_probs=99.0

Q ss_pred             CccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccc
Q 032073            4 PKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF   83 (148)
Q Consensus         4 ~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gf   83 (148)
                      ||++++   +.+.+.+|+.||.+|+++|        ||||++|||+|||||+||+|||.|+|+|    +|||+++|.++|
T Consensus        74 ~~~~~~---~~~~~~~~~~Rk~~~~~~s--------da~IvlPGG~GTl~El~e~lt~~q~g~~----~kPvvll~~~g~  138 (191)
T 1t35_A           74 VHQNLT---ELIEVNGMHERKAKMSELA--------DGFISMPGGFGTYEELFEVLCWAQIGIH----QKPIGLYNVNGY  138 (191)
T ss_dssp             TTCCCS---EEEEESHHHHHHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHTTSCSSC----CCCEEEECGGGT
T ss_pred             ccCCCC---ccccCCCHHHHHHHHHHHC--------CEEEEeCCCccHHHHHHHHHHHHHhCCC----CCCEEEecCCcc
Confidence            577766   6788999999999999986        9999999999999999999999999886    699999999999


Q ss_pred             hHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhhhccCCccccc
Q 032073           84 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRV  135 (148)
Q Consensus        84 wd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~~~~~~~~~~~  135 (148)
                      |++|++|+++|+++|||++++. +++.+++|++|+++.|+++.++....+|+
T Consensus       139 ~~~l~~~l~~~~~~Gfi~~~~~-~~~~~~~~~~e~~~~l~~~~~~~~~~~~~  189 (191)
T 1t35_A          139 FEPMMKMVKYSIQEGFSNESHL-KLIHSSSRPDELIEQMQNYSYPILEKKWT  189 (191)
T ss_dssp             THHHHHHHHHHHHTTSSCTTHH-HHEEEESSHHHHHHHHHTC----------
T ss_pred             cchHHHHHHHHHHCCCCCHHHc-CeEEEeCCHHHHHHHHHHhcCCccccccc
Confidence            9999999999999999999875 78999999999999999876433214553

>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A

Probab=100.00  E-value=1.1e-32  Score=221.81  Aligned_cols=118  Identities=21%  Similarity=0.285  Sum_probs=94.9

Q ss_pred             ceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHH
Q 032073           13 QLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG   92 (148)
Q Consensus        13 ~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~   92 (148)
                      +...+++|++||.+|+++|        ||||++|||+|||||+||+|||.|+|.|    +|||+|+|.+|||++|++|++
T Consensus        88 ~~~~~~~~~~Rk~~~~~~s--------da~I~lpGG~GTLdElfE~lt~~qlg~~----~kPvvll~~~gfw~~l~~~l~  155 (216)
T 1ydh_A           88 DVRVVADMHERKAAMAQEA--------EAFIALPGGYGTMEELLEMITWSQLGIH----KKTVGLLNVDGYYNNLLALFD  155 (216)
T ss_dssp             EEEEESSHHHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHHHTSC----CCEEEEECGGGTTHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHhC--------CEEEEeCCCccHHHHHHHHHHHHHhccc----CCCEEEecCCccchHHHHHHH
Confidence            4677899999999999986        9999999999999999999999999864    899999999999999999999


Q ss_pred             HHHHcCCCChhhcccceEEeCCHHHHHHHHHhhhcc----CCccccccccccccc
Q 032073           93 DCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL----SSIDKRVHEVNLKST  143 (148)
Q Consensus        93 ~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~~~~----~~~~~~~~~~~~~~~  143 (148)
                      +|+++|||++++. +++.+++|++|+++.|+++++.    .....|..+-.++||
T Consensus       156 ~~~~~Gfi~~~~~-~~~~~~d~~ee~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  209 (216)
T 1ydh_A          156 TGVEEGFIKPGAR-NIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEELGDYP  209 (216)
T ss_dssp             HHHHTTSSCHHHH-TTEEEESSHHHHHHHHHHCC---------------------
T ss_pred             HHHHCCCCChHHc-CeEEEeCCHHHHHHHHHHhcccccccccccccchhhccCCC
Confidence            9999999999875 8999999999999999987643    223445555555554

>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A

Probab=99.97  E-value=9.5e-32  Score=216.15  Aligned_cols=104  Identities=25%  Similarity=0.425  Sum_probs=94.3

Q ss_pred             CceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHH
Q 032073           12 SQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL   91 (148)
Q Consensus        12 ~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l   91 (148)
                      +....+++|+.||.+|.++|        ||||++|||+|||||+||+|||.|+|.|    +|||+|+|.+|||++|++|+
T Consensus        91 ~~~~~~~~f~~Rk~~~~~~s--------da~VvlpGG~GTLdElfE~lt~~qlg~~----~kPvvll~~~g~w~~l~~~l  158 (215)
T 2a33_A           91 GEVRAVADMHQRKAEMAKHS--------DAFIALPGGYGTLEELLEVITWAQLGIH----DKPVGLLNVDGYYNSLLSFI  158 (215)
T ss_dssp             CEEEEESSHHHHHHHHHHTC--------SEEEECSCCHHHHHHHHHHHHHHHTTSC----CCCEEEECGGGTTHHHHHHH
T ss_pred             CceeecCCHHHHHHHHHHhC--------CEEEEeCCCCchHHHHHHHHHHHHhCCC----CCCeEEecCcchhHHHHHHH
Confidence            35788999999999999986        9999999999999999999999999965    79999999999999999999


Q ss_pred             HHHHHcCCCChhhcccceEEeCCHHHHHHHHHhhhcc
Q 032073           92 GDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL  128 (148)
Q Consensus        92 ~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~~~~  128 (148)
                      ++|+++|||++++. +++.++||++|+++.|+++++.
T Consensus       159 ~~~~~~Gfi~~~~~-~~~~~~d~~ee~~~~l~~~~~~  194 (215)
T 2a33_A          159 DKAVEEGFISPTAR-EIIVSAPTAKELVKKLEEYAPC  194 (215)
T ss_dssp             HHHHHHTSSCHHHH-TTEEEESSHHHHHHHHHC----
T ss_pred             HHHHHcCCCCHHHC-CeEEEeCCHHHHHHHHHHhcCc
Confidence            99999999999875 8899999999999999988753

>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1

Probab=99.97  E-value=1.4e-31  Score=215.40  Aligned_cols=109  Identities=28%  Similarity=0.516  Sum_probs=98.2

Q ss_pred             CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073            3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS   82 (148)
Q Consensus         3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g   82 (148)
                      .||++++   ..+.+++|+.||..|.++|        ||||++|||+|||||+||+|||.|+|++   ++|||+++|. +
T Consensus       107 ~~~~~~t---~~~~~~~f~~Rk~~m~~~s--------da~IvlpGG~GTL~El~e~lt~~qlg~~---~~kPvvll~~-~  171 (217)
T 1wek_A          107 KPNPYQT---HALSLRYFFVRKVLFVRYA--------VGFVFLPGGFGTLDELSEVLVLLQTEKV---HRFPVFLLDR-G  171 (217)
T ss_dssp             CCCSCCS---EEEEESCHHHHHHHHHHTE--------EEEEECSCCHHHHHHHHHHHHHHHTTSS---CCCCEEEECH-H
T ss_pred             hccccCC---cCcccCCHHHHHHHHHHhC--------CEEEEeCCCCcHHHHHHHHHHHHhhCCC---CCCCEEEeCc-c
Confidence            3688887   5689999999999999986        9999999999999999999999999876   4799999997 6


Q ss_pred             chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhhhc
Q 032073           83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD  127 (148)
Q Consensus        83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~~~  127 (148)
                      ||++|++|+++|+++||+++++. +++.+++|++|+++.|+++++
T Consensus       172 ~w~~l~~~l~~~~~~Gfi~~~~~-~~~~~~~~~~e~~~~l~~~~~  215 (217)
T 1wek_A          172 YWEGLVRWLAFLRDQKAVGPEDL-QLFRLTDEPEEVVQALKAEAP  215 (217)
T ss_dssp             HHHHHHHHHHHHHHTTSSCTTGG-GGSEEESCHHHHHHHHHC---
T ss_pred             cchhHHHHHHHHHHCCCCCHHHc-CeEEEeCCHHHHHHHHHHhcC
Confidence            99999999999999999999875 788999999999999998764

>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A

Probab=99.96  E-value=2.4e-29  Score=220.17  Aligned_cols=109  Identities=20%  Similarity=0.393  Sum_probs=97.4

Q ss_pred             CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeC--
Q 032073            3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY--   80 (148)
Q Consensus         3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~--   80 (148)
                      .||++++   +++.+++|++||.+|++.|        ||||+||||+|||||+||+|||.|+|. +|.++|||+|+|+  
T Consensus       223 ~~N~~vt---eliiv~~m~~RK~~mv~~S--------DAfIaLPGG~GTLEELfE~LTw~qLgt-gk~h~kPIVLln~~~  290 (462)
T 3gh1_A          223 PPNPIVN---ELVIMPDIEKRLEAFVRMA--------HGIIIFPGGPGTAEELLYILGIMMHPE-NADQPMPIVLTGPKQ  290 (462)
T ss_dssp             CCCTTCS---EEEECSSHHHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHTSGG-GTTCCCCEEEEECGG
T ss_pred             ccCCCCC---eeEEeCCHHHHHHHHHHHC--------CEEEEcCCCcchHHHHHHHHHHHhccc-CcCCCCCEEEEcCCC
Confidence            4899999   7899999999999999986        999999999999999999999999884 3345899999998  


Q ss_pred             -ccchHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhhhcc
Q 032073           81 -DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL  128 (148)
Q Consensus        81 -~gfwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~~~~  128 (148)
                       +|||++|++|+++++.+|.     ..+++.++||++|+++.|+++++.
T Consensus       291 ~~gYwd~Ll~fL~~~v~eg~-----~~~~~iv~DdpeEvl~~i~~~~~~  334 (462)
T 3gh1_A          291 SEAYFRSLDKFITDTLGEAA-----RKHYSIAIDNPAEAARIMSNAMPL  334 (462)
T ss_dssp             GHHHHHHHHHHHHHHHCGGG-----GGGCEEEESCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhhhh-----hhccEEEcCCHHHHHHHHHHHHHH
Confidence             8999999999999988763     345778999999999999998743

>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1

Probab=99.95  E-value=6.2e-29  Score=192.99  Aligned_cols=98  Identities=27%  Similarity=0.473  Sum_probs=88.9

Q ss_pred             CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073            3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS   82 (148)
Q Consensus         3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g   82 (148)
                      .||++++   ..+.+++|+.||..|.++|        ||||++|||+|||||+||+|||.|+|++   ++|| +|+|  +
T Consensus        73 ~~~~~~~---~~~~~~~f~~Rk~~~~~~s--------da~ivlpGG~GTl~El~e~lt~~q~g~~---~~kP-vll~--g  135 (171)
T 1weh_A           73 GPNPFVD---LELPAATLPQRIGRLLDLG--------AGYLALPGGVGTLAELVLAWNLLYLRRG---VGRP-LAVD--P  135 (171)
T ss_dssp             SSCTTCS---EECCCSSHHHHHHHHHHHE--------EEEEECSCCHHHHHHHHHHHHHHHTCSS---CSCC-EEEC--G
T ss_pred             cccCCCc---eeeecCCHHHHHHHHHHhC--------CEEEEeCCCccHHHHHHHHHHHHHhCcc---CCCe-EEEC--c
Confidence            3688877   6788999999999999986        9999999999999999999999999886   4799 9999  8


Q ss_pred             chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHh
Q 032073           83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE  124 (148)
Q Consensus        83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~  124 (148)
                      ||++++      +++||+++++. +++.+++|++|+++.|++
T Consensus       136 ~~~~l~------~~~gfi~~~~~-~~~~~~~~~~e~~~~l~~  170 (171)
T 1weh_A          136 YWLGLL------KAHGEIAPEDV-GLLRVVADEEDLRRFLRS  170 (171)
T ss_dssp             GGGGTC------CCBTTBCHHHH-TTSEECCSHHHHHHHHHT
T ss_pred             chhhhH------hhcCCCChhhc-CeEEEeCCHHHHHHHHHh
Confidence            999987      78999999874 888999999999999864

>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}

Probab=99.95  E-value=9.1e-28  Score=210.70  Aligned_cols=106  Identities=20%  Similarity=0.374  Sum_probs=93.7

Q ss_pred             CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEe---
Q 032073            3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN---   79 (148)
Q Consensus         3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln---   79 (148)
                      .||++++   ..+.++||++||.+|++.|        ||||+||||+|||||+||+|||.|+|. ++.++|||+|+|   
T Consensus       221 ~~N~~vt---elIiv~~m~eRK~~mv~~S--------DAfIaLPGG~GTLeELfEaLT~~QLg~-~k~~~kPVVLlg~~n  288 (460)
T 3bq9_A          221 PPNPIVN---ELVILPDIEKRLEAFVRCA--------HGIVIFPGGAGTAEELLYLLGILMHPD-NQRQSLPVILTGPAS  288 (460)
T ss_dssp             CCCTTCS---EEEECSSHHHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHTSGG-GTTCCCCEEEEECGG
T ss_pred             hcCCCCC---eEEEECCHHHHHHHHHHhC--------CEEEEcCCCcchHHHHHHHHHHHhhcc-ccCCCCCEEEEecCC
Confidence            4899999   6899999999999999986        999999999999999999999999987 333589999998   


Q ss_pred             CccchHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhh
Q 032073           80 YDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF  125 (148)
Q Consensus        80 ~~gfwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~  125 (148)
                      ++|||++|++|+++++++    + +...++.+++|++|+++.++++
T Consensus       289 ~~gywd~Ll~~l~~~l~~----~-~~~~~iiv~ddpeEal~~l~~~  329 (460)
T 3bq9_A          289 SRDYFEALDEFIGATIGD----E-ARQLYKIIIDDPAAVAQHMHAG  329 (460)
T ss_dssp             GHHHHHHHHHHHHHHTCT----T-GGGGCEEEESCHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHhcc----h-hhcCcEEEeCCHHHHHHHHHHH
Confidence            589999999999998776    2 4456778999999999998765

>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1

Probab=99.88  E-value=3.8e-23  Score=164.15  Aligned_cols=88  Identities=17%  Similarity=0.182  Sum_probs=78.6

Q ss_pred             chHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHc
Q 032073           18 RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDW   97 (148)
Q Consensus        18 ~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~   97 (148)
                      .+|+.||..|.++|        ||||++|||+|||+|++|+|+      +    +|||+++|.+|||+++   +++|+++
T Consensus       106 ~~f~~Rk~~m~~~s--------da~IvlpGG~GTL~E~~eal~------~----~kPV~lln~~g~w~~~---l~~~~~~  164 (195)
T 1rcu_A          106 LDFQMRSFVLLRNA--------DVVVSIGGEIGTAIEILGAYA------L----GKPVILLRGTGGWTDR---ISQVLID  164 (195)
T ss_dssp             CCHHHHHHHHHTTC--------SEEEEESCCHHHHHHHHHHHH------T----TCCEEEETTSCHHHHH---GGGGCBT
T ss_pred             CCHHHHHHHHHHhC--------CEEEEecCCCcHHHHHHHHHh------c----CCCEEEECCCCccHHH---HHHHHHc
Confidence            58999999999986        999999999999999999997      2    5899999999999987   5788899


Q ss_pred             C-CCChhhcccceEEeCCHHHHHHHHHhhhc
Q 032073           98 G-TVAKDEVASLWKICDSNSEALSYLAEFYD  127 (148)
Q Consensus        98 G-fi~~~~~~~li~~~d~~ee~l~~L~~~~~  127 (148)
                      | ||++++ .+++.+++|++|+++.|++++.
T Consensus       165 G~fi~~~~-~~~i~~~~~~ee~~~~l~~~~~  194 (195)
T 1rcu_A          165 GKYLDNRR-IVEIHQAWTVEEAVQIIEQILG  194 (195)
T ss_dssp             TTBSSTTC-CSCEEEESSHHHHHHHHHTC--
T ss_pred             CCcCCHHH-cCeEEEeCCHHHHHHHHHHHhc
Confidence            8 999977 5899999999999999988653

>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A

Probab=99.78  E-value=2.9e-20  Score=145.33  Aligned_cols=90  Identities=17%  Similarity=0.097  Sum_probs=78.6

Q ss_pred             CccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccc
Q 032073            4 PKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF   83 (148)
Q Consensus         4 ~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gf   83 (148)
                      +|++++   ..+.+.+|+.||..|.++|        ||||++|||+|||+|++|+|      ++    +|||+++|.   
T Consensus        84 ~~~~~~---~~i~~~~~~~Rk~~m~~~s--------da~IvlpGg~GTL~E~~~al------~~----~kpV~~l~~---  139 (176)
T 2iz6_A           84 ISDAVD---IPIVTGLGSARDNINALSS--------NVLVAVGMGPGTAAEVALAL------KA----KKPVVLLGT---  139 (176)
T ss_dssp             CCTTCS---EEEECCCCSSSCCCCGGGC--------SEEEEESCCHHHHHHHHHHH------HT----TCCEEEESC---
T ss_pred             hccCCc---eeEEcCCHHHHHHHHHHhC--------CEEEEecCCccHHHHHHHHH------Hh----CCcEEEEcC---
Confidence            688877   5788999999999999986        99999999999999999999      22    689999995   


Q ss_pred             hHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhhhc
Q 032073           84 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD  127 (148)
Q Consensus        84 wd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~~~  127 (148)
                      |+         .++||+++++ .+.+.+++|++|+++.|++++.
T Consensus       140 ~~---------~~~gfi~~~~-~~~i~~~~~~~e~~~~l~~~~~  173 (176)
T 2iz6_A          140 QP---------EAEKFFTSLD-AGLVHVAADVAGAIAAVKQLLA  173 (176)
T ss_dssp             CH---------HHHHHHHHHC-TTTEEEESSHHHHHHHHHHHHH
T ss_pred             cc---------cccccCChhh-cCeEEEcCCHHHHHHHHHHHHH
Confidence            76         5667888865 5789999999999999999875

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}

Probab=81.75  E-value=2.6  Score=35.80  Aligned_cols=87  Identities=14%  Similarity=-0.015  Sum_probs=47.7

Q ss_pred             CccEEEE-ccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHHcCCCChhhcccceEEeCCHH
Q 032073           38 DRTAVVA-LPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS  116 (148)
Q Consensus        38 esdAfI~-lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~e  116 (148)
                      +.|++++ .|||+-..+++.+.+.-.. ...+  .+|||++.-..+-.+.-.+   .+.+.|          +...++++
T Consensus       301 ~v~~ilv~i~ggi~~~~~vA~~i~~a~-~~~~--~~kPvvv~~~G~~~~~~~~---~l~~~g----------ip~~~~~e  364 (397)
T 3ufx_B          301 DVKGVFINIFGGITRADEVAKGVIRAL-EEGL--LTKPVVMRVAGTAEEEAKK---LLEGKP----------VYMYPTSI  364 (397)
T ss_dssp             TCCEEEEEEEEEEEESHHHHHHHHHHH-TTTC--CCSCEEEEEEEECHHHHHH---HTTTSS----------EEECSSHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHH-HhhC--CCCcEEEEccCCCHHHHHH---HHHhCC----------CcccCCHH
Confidence            3477766 8999999999998876542 1211  3789876643221222222   222212          57889999


Q ss_pred             HHHHHHHhhhccCCccccccccccccc
Q 032073          117 EALSYLAEFYDLSSIDKRVHEVNLKST  143 (148)
Q Consensus       117 e~l~~L~~~~~~~~~~~~~~~~~~~~~  143 (148)
                      ++++.+.....   ..+||+.+-|.-|
T Consensus       365 ~Aa~~~~~l~~---~a~w~~~~~g~~~  388 (397)
T 3ufx_B          365 EAAKVTVAMKG---GAAWLEFAPGDLP  388 (397)
T ss_dssp             HHHHHHHHSCC---SCC----------
T ss_pred             HHHHHHHHHHH---HhHHhhCCCCCCc
Confidence            99999876543   4577776665543

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=81.15  E-value=4.7  Score=30.16  Aligned_cols=78  Identities=24%  Similarity=0.184  Sum_probs=44.1

Q ss_pred             CccEEEEc--c--CC---hhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccchHHHHHHHHHHHH-cCCCC-----hhh
Q 032073           38 DRTAVVAL--P--GG---VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCED-WGTVA-----KDE  104 (148)
Q Consensus        38 esdAfI~l--P--GG---~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gfwd~L~~~l~~m~~-~Gfi~-----~~~  104 (148)
                      +||++|+.  |  |-   .||.=|+--++.+          .|||+++..+ + +++.+-.....+ .|+.-     +..
T Consensus        67 ~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al----------gKPVi~l~~d-~-r~~~~~~~~~~d~~g~~vedf~~~~N  134 (161)
T 2f62_A           67 DCDAVIADLSPFRGHEPDCGTAFEVGCAAAL----------NKMVLTFTSD-R-RNMREKYGSGVDKDNLRVEGFGLPFN  134 (161)
T ss_dssp             HCSEEEEECCCCSSSSCCHHHHHHHHHHHHT----------TCEEEEECSC-C-SCHHHHHTSSBCTTSCBCCCSSCSSC
T ss_pred             hCCEEEEEecCCCCCCCCCcHHHHHHHHHHC----------CCEEEEEEcC-c-hhhhhhcccccccccccccccCCcch
Confidence            35999999  6  43   7998888766532          6899998743 2 333322111100 11110     000


Q ss_pred             c--ccceEEeCCHHHHHHHHHhhhc
Q 032073          105 V--ASLWKICDSNSEALSYLAEFYD  127 (148)
Q Consensus       105 ~--~~li~~~d~~ee~l~~L~~~~~  127 (148)
                      +  ...+.+.++.+++++.|.+...
T Consensus       135 LMl~~~~~~~~~~~~~l~~l~~~~~  159 (161)
T 2f62_A          135 LMLYDGVEVFDSFESAFKYFLANFP  159 (161)
T ss_dssp             GGGCCSSCEESSHHHHHHHHHHHSC
T ss_pred             hhhhhhheeeCCHHHHHHHHHHhhc
Confidence            0  0111267999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d2q4oa1	183	c.129.1.1 (A:8-190) Hypothetical protein At2g37210	4e-13
d1ydhb_	181	c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha	4e-11
d1t35a_	179	c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus	6e-11
d1weka_	208	c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16	3e-10
d1weha_	171	c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02	6e-06
d1rcua_	170	c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo	4e-04

>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 183

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At2g37210/T2N18.3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 61.3 bits (148), Expect = 4e-13
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 33  RNDSCDR-TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 91
           + +      A +ALPGG GTL+E+ E++   QL         P  ++N D +Y  LL F+
Sbjct: 96  KAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIH----DKPVGLLNVDGYYNSLLSFI 151

Query: 92  GDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 124
               + G +       +     +  E +  L E
Sbjct: 152 DKAVEEGFI-SPTAREIIVSAPTAKELVKKLEE 183

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.9 bits (134), Expect = 4e-11
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 14/108 (12%)

Query: 18  RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 77
                +     +           A +ALPGG GT++E+ E++   QL            +
Sbjct: 87  DMHERKAAMAQEA---------EAFIALPGGYGTMEELLEMITWSQLGIH----KKTVGL 133

Query: 78  MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 125
           +N D +Y  LL       + G + K    ++     +  E +  + E+
Sbjct: 134 LNVDGYYNNLLALFDTGVEEGFI-KPGARNIVVSAPTAKELMEKMEEY 180

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

 Score = 55.1 bits (132), Expect = 6e-11
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 42  VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA 101
            +++PGG GT +E+FE+L   Q+         P  + N + +++ ++  +      G   
Sbjct: 101 FISMPGGFGTYEELFEVLCWAQIGIH----QKPIGLYNVNGYFEPMMKMVKYSIQEGFSN 156

Query: 102 KDEVASLWKICDSNSEALSYLAEF 125
           +  +  L        E +  +  +
Sbjct: 157 ESHL-KLIHSSSRPDELIEQMQNY 179

>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]

 Score = 54.0 bits (129), Expect = 3e-10
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 1   MLSPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 60
           +   +     ++  + LR+F  RK   +  AV          V LPGG GTLDE+ E+L 
Sbjct: 98  LPHEQKPNPYQTHALSLRYFFVRKVLFVRYAVG--------FVFLPGGFGTLDELSEVLV 149

Query: 61  LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 120
           L+Q E++        + +    +++ L+ +L    D   V   E   L+++ D   E + 
Sbjct: 150 LLQTEKV----HRFPVFLLDRGYWEGLVRWLAFLRDQKAV-GPEDLQLFRLTDEPEEVVQ 204

Query: 121 YL 122
            L
Sbjct: 205 AL 206

>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]

 Score = 41.7 bits (97), Expect = 6e-06
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 17/98 (17%)

Query: 25  HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 84
              I   +   +      +ALPGGVGTL E+     L+ L R           +  D ++
Sbjct: 88  PQRIGRLLDLGAGY----LALPGGVGTLAELVLAWNLLYLRRG------VGRPLAVDPYW 137

Query: 85  KKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 122
             LL   G+          E   L ++     +   +L
Sbjct: 138 LGLLKAHGE-------IAPEDVGLLRVVADEEDLRRFL 168

>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 13/82 (15%)

Query: 43  VALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAK 102
           V++ G +GT  E+    AL +          P +++     +   +  +    D   +  
Sbjct: 101 VSIGGEIGTAIEILGAYALGK----------PVILLRGTGGWTDRISQV--LIDGKYLDN 148

Query: 103 DEVASLWKICDSNSEALSYLAE 124
             +        +  EA+  + +
Sbjct: 149 RRI-VEIHQAWTVEEAVQIIEQ 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1t35a_	179	Hypothetical protein YvdD {Bacillus subtilis [TaxI	100.0
d2q4oa1	183	Hypothetical protein At2g37210/T2N18.3 {Thale cres	100.0
d1ydhb_	181	Hypothetical protein At5g11950 {Thale cress (Arabi	100.0
d1weka_	208	Hypothetical protein TT1465 (TTHA1644) {Thermus th	99.97
d1weha_	171	Hypothetical protein TT1887 (TTHA0294) {Thermus th	99.93
d1rcua_	170	Hypothetical protein TM1055 {Thermotoga maritima [	99.91

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=3.5e-35  Score=227.44  Aligned_cols=106  Identities=18%  Similarity=0.369  Sum_probs=98.8

Q ss_pred             CccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccc
Q 032073            4 PKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF   83 (148)
Q Consensus         4 ~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gf   83 (148)
                      ||++++   +.+.+++|++||..|++.|        ||||+||||+|||||+||+|||.|+|.|    +|||+|+|.+||
T Consensus        74 ~~~~~~---~~~~~~~~~~Rk~~m~~~s--------dafI~lPGG~GTLdEl~e~l~~~ql~~~----~kPiil~n~~gf  138 (179)
T d1t35a_          74 VHQNLT---ELIEVNGMHERKAKMSELA--------DGFISMPGGFGTYEELFEVLCWAQIGIH----QKPIGLYNVNGY  138 (179)
T ss_dssp             TTCCCS---EEEEESHHHHHHHHHHHHC--------SEEEECSCCHHHHHHHHHHHHTTSCSSC----CCCEEEECGGGT
T ss_pred             ccccce---eeeeeccHHHHHHHHHHhc--------CeEEEecCccchhhHHHHHHHHHHhhcc----CCCeEeecCCcc
Confidence            566676   8899999999999999986        9999999999999999999999999875    789999999999


Q ss_pred             hHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhh
Q 032073           84 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF  125 (148)
Q Consensus        84 wd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~  125 (148)
                      |++|++|+++++++||+++++. +++.+++|++|+++.|++|
T Consensus       139 w~~l~~~l~~~~~~gfi~~~~~-~~i~~~~~~~e~i~~L~~~  179 (179)
T d1t35a_         139 FEPMMKMVKYSIQEGFSNESHL-KLIHSSSRPDELIEQMQNY  179 (179)
T ss_dssp             THHHHHHHHHHHHTTSSCTTHH-HHEEEESSHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCCChHHh-CcEEEeCCHHHHHHHHHhC
Confidence            9999999999999999999775 8999999999999999875

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.8e-34  Score=221.70  Aligned_cols=106  Identities=22%  Similarity=0.343  Sum_probs=98.6

Q ss_pred             CccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCccc
Q 032073            4 PKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF   83 (148)
Q Consensus         4 ~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~gf   83 (148)
                      +|+.++   +.+.+++|++||..|++.|        ||||+||||+|||||+||+|+|.|++.|    +||++++|.+||
T Consensus        75 ~~~~~~---~~~~~~~~~~Rk~~m~~~s--------dafIvlPGG~GTLdEl~e~l~l~ql~~~----~kpiiiln~~gf  139 (181)
T d1ydhb_          75 SGETVG---DVRVVADMHERKAAMAQEA--------EAFIALPGGYGTMEELLEMITWSQLGIH----KKTVGLLNVDGY  139 (181)
T ss_dssp             CSCCCS---EEEEESSHHHHHHHHHHHC--------SEEEECSCSHHHHHHHHHHHHHHHHTSC----CCEEEEECGGGT
T ss_pred             CCcccC---cceeeccHHHHHHHHHHhC--------eeEEEeCCccchHHHHHHHHHHHHhccc----CCCeEEEecCcc
Confidence            455555   7899999999999999986        9999999999999999999999999886    799999999999


Q ss_pred             hHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHhh
Q 032073           84 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF  125 (148)
Q Consensus        84 wd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~~  125 (148)
                      |++|++|+++++++||+++++. +++.++||++|++++|++|
T Consensus       140 w~~l~~~l~~~~~~g~i~~~~~-~~~~~~d~~ee~~~~l~~~  180 (181)
T d1ydhb_         140 YNNLLALFDTGVEEGFIKPGAR-NIVVSAPTAKELMEKMEEY  180 (181)
T ss_dssp             THHHHHHHHHHHHHTSSCHHHH-TTEEEESSHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCCCHHHc-CeEEEeCCHHHHHHHHHhh
Confidence            9999999999999999999775 8999999999999999886

>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=3.3e-32  Score=215.83  Aligned_cols=106  Identities=29%  Similarity=0.547  Sum_probs=98.1

Q ss_pred             CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073            3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS   82 (148)
Q Consensus         3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g   82 (148)
                      .||++++   ..+.+++|++||..|++.|        ||||+||||+|||||+||+|||.|+|.+   ++|||+++| +|
T Consensus       103 ~~~~~~~---~~i~~~~~~~Rk~~m~~~s--------DafI~lPGG~GTLdEl~e~lt~~ql~~~---~~kPIil~~-~g  167 (208)
T d1weka_         103 KPNPYQT---HALSLRYFFVRKVLFVRYA--------VGFVFLPGGFGTLDELSEVLVLLQTEKV---HRFPVFLLD-RG  167 (208)
T ss_dssp             CCCSCCS---EEEEESCHHHHHHHHHHTE--------EEEEECSCCHHHHHHHHHHHHHHHTTSS---CCCCEEEEC-HH
T ss_pred             ccccccc---eEEecccHHHHHHHHHhCC--------CceEEecCcchhHHHHHHHHHHHhcccc---CcCcccccC-Cc
Confidence            5899888   7789999999999999975        9999999999999999999999999876   479999999 89


Q ss_pred             chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHh
Q 032073           83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE  124 (148)
Q Consensus        83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~  124 (148)
                      ||++|++|+++++++||+++++ .+++.++||++|+++.|++
T Consensus       168 fw~~l~~~l~~~~~~gfi~~~~-~~~i~v~d~~ee~i~~L~s  208 (208)
T d1weka_         168 YWEGLVRWLAFLRDQKAVGPED-LQLFRLTDEPEEVVQALKA  208 (208)
T ss_dssp             HHHHHHHHHHHHHHTTSSCTTG-GGGSEEESCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCChHH-hCcEEEeCCHHHHHHHhhC
Confidence            9999999999999999999976 4888999999999999974

>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=6.5e-27  Score=180.28  Aligned_cols=98  Identities=27%  Similarity=0.465  Sum_probs=83.2

Q ss_pred             CCccccccCCceeeechHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCcc
Q 032073            3 SPKVLCKQESQLVDLRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS   82 (148)
Q Consensus         3 ~~n~~~~~~~~~~~~~~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~g   82 (148)
                      .||++++   +.+.+.+|++||..|++.|        ||||+||||+|||||+||+|++.|++..   +++|   +|.+|
T Consensus        73 ~~n~~~~---~~i~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTLdEl~e~~~~~~l~~~---~~~~---~~~~g  135 (171)
T d1weha_          73 GPNPFVD---LELPAATLPQRIGRLLDLG--------AGYLALPGGVGTLAELVLAWNLLYLRRG---VGRP---LAVDP  135 (171)
T ss_dssp             SSCTTCS---EECCCSSHHHHHHHHHHHE--------EEEEECSCCHHHHHHHHHHHHHHHTCSS---CSCC---EEECG
T ss_pred             ccCcccc---cccccchHHHHHHHHHHcc--------cceeecCCccchHHHHHHHHHHHHcCCC---CCcC---eecCc
Confidence            4788888   7788899999999999986        9999999999999999999999888532   2344   44568


Q ss_pred             chHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHh
Q 032073           83 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE  124 (148)
Q Consensus        83 fwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~  124 (148)
                      ||+++++      .+||+++++. +++.+++|++|+++.|++
T Consensus       136 ~w~~ll~------~~g~i~~~~~-~~~~i~~~~~e~~~~l~~  170 (171)
T d1weha_         136 YWLGLLK------AHGEIAPEDV-GLLRVVADEEDLRRFLRS  170 (171)
T ss_dssp             GGGGTCC------CBTTBCHHHH-TTSEECCSHHHHHHHHHT
T ss_pred             ccHHHHh------hCCCCCHHHc-CcEEEECCHHHHHHHHhc
Confidence            9999843      5799999875 788999999999999975

>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2.2e-25  Score=170.81  Aligned_cols=98  Identities=17%  Similarity=0.157  Sum_probs=84.8

Q ss_pred             CCccccccCCceeeec-hHHHhHHHHHHhhhhcCCCCccEEEEccCChhhHHHHHHHHHHHhhhhhcCCCCCcEEEEeCc
Q 032073            3 SPKVLCKQESQLVDLR-FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD   81 (148)
Q Consensus         3 ~~n~~~~~~~~~~~~~-~f~~Rk~~l~~~a~~~~~~esdAfI~lPGG~GTLeElfEvlt~~qlg~~~k~~~kPivlln~~   81 (148)
                      .+|++++   ..+.+. +|++||..|++.|        ||||+||||+|||+|+|++|+|          .|||+++|.+
T Consensus        71 ~~n~~~~---~~i~~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTl~El~~a~~l----------~KPiilln~~  129 (170)
T d1rcua_          71 AGNPYLS---VAVKTGLDFQMRSFVLLRNA--------DVVVSIGGEIGTAIEILGAYAL----------GKPVILLRGT  129 (170)
T ss_dssp             CCCTTCS---EEEECCCCHHHHHHHHHTTC--------SEEEEESCCHHHHHHHHHHHHT----------TCCEEEETTS
T ss_pred             ccCcccc---eeEEeccchhhhHHHHhhcc--------cceeeeccccchHHHHHHHHHh----------CCceEEecCC
Confidence            4788887   345544 8999999999975        9999999999999999999965          3699999999


Q ss_pred             cchHHHHHHHHHHHHcCCCChhhcccceEEeCCHHHHHHHHHh
Q 032073           82 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE  124 (148)
Q Consensus        82 gfwd~L~~~l~~m~~~Gfi~~~~~~~li~~~d~~ee~l~~L~~  124 (148)
                      +||++++.  +.+.+.||+++++. +.+++++|++|+++.|++
T Consensus       130 g~w~~~i~--~~~~~~~~i~~~~~-~~i~~~~~~ee~~~~l~~  169 (170)
T d1rcua_         130 GGWTDRIS--QVLIDGKYLDNRRI-VEIHQAWTVEEAVQIIEQ  169 (170)
T ss_dssp             CHHHHHGG--GGCBTTTBSSTTCC-SCEEEESSHHHHHHHHHT
T ss_pred             CchHHHHH--HHHHHCCCCCHHHc-CeEEEeCCHHHHHHHHHc
Confidence            99999865  45889999998775 788999999999999975