Citrus Sinensis ID: 032092

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF
Secondary Structure (PSIPRED)
cEEEEcccEEEEEEccccccccEEEEcccccEEEEEEEccccccEEEEccccEEEEEEcccccccccEEEEEcccccccccEEcEEcEEcccccccccEEEEEEEEEccccEEEEEEEccccEEEEEcccccEEEEEccccEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEcccEEEEEEcccccccEEEEcccccEEEEEEEEcccccEEEEEEEccEEEEEEEccccccccEEEEEEEccccccEEEccccccccccccccEEEEcccccEEEEEEEEEEEccccccEEEcccccEEEEEcccHHHHHccc
Coil and Loop (DISEMBL)
MVVGTADRNLVVFNLqnpqtefkrinsplkYQMRCVaafpdqqgfwvgsiegrvgvhhlddsqqsknftfkchrdgsetcsvisftsilagdapkyssfykvKRLHLFVKSHVIVLFVQIHHtfatagsdgafnfwdkdskQRLKVF
Flexible Loop (DISEMBL)
mvvgtadrnlvvfnlqnpqtefkrINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF
Low Complexity Region (SEG)
MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF
Disordered region (IsUnstruct)
*******RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD**********
Disordered Region (DISOPRED)
MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF*F*****G*E**SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF
Disordered Region (DISEMBL)
MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF
Disordered Region (DISPRO)
MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q38942	349	Rae1-like protein At1g806	yes	no	0.795	0.335	0.673	1e-49
Q5FVA9	368	mRNA export factor OS=Xen	yes	no	0.823	0.328	0.443	6e-26
Q3SWS8	368	mRNA export factor OS=Rat	yes	no	0.829	0.331	0.44	6e-26
A5GFN6	368	mRNA export factor OS=Sus	yes	no	0.829	0.331	0.44	6e-26
Q5RF99	368	mRNA export factor OS=Pon	yes	no	0.829	0.331	0.44	6e-26
P78406	368	mRNA export factor OS=Hom	yes	no	0.829	0.331	0.44	6e-26
Q7ZWF0	368	mRNA export factor OS=Dan	yes	no	0.823	0.328	0.423	6e-26
Q8C570	368	mRNA export factor OS=Mus	yes	no	0.829	0.331	0.44	7e-26
Q5E9A4	368	mRNA export factor OS=Bos	yes	no	0.829	0.331	0.44	7e-26
Q4R6D2	368	mRNA export factor OS=Mac	N/A	no	0.829	0.331	0.44	1e-25

>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2

 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 103/147 (70%), Gaps = 30/147 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
           MVVGTADRNL+VFNLQNPQTEFKRI SPLKYQ RCV AFPDQQGF VGSIEGRVGVHHLD
Sbjct: 168 MVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLD 227

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
           DSQQSKNFTFKCHRDG++  SV S                                F  +
Sbjct: 228 DSQQSKNFTFKCHRDGNDIYSVNSLN------------------------------FHPV 257

Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
           H TFATAGSDGAFNFWDKDSKQRLK  
Sbjct: 258 HGTFATAGSDGAFNFWDKDSKQRLKAM 284

Arabidopsis thaliana (taxid: 3702)

>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1

 Score =  116 bits (290), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 30/151 (19%)

Query: 2   VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
           VV TA+R L+V+ L+N  +EF+RI+SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query: 58  HLDDSQQSK-NFTFKCHR-DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIV 115
           +++    +K NFTFKCHR +G+ T             AP+    Y V            +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTT------------APQ--DIYAVNG----------I 279

Query: 116 LFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
            F  +H T AT GSDG F+FWDKD++ +LK 
Sbjct: 280 AFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Xenopus tropicalis (taxid: 8364)

>sp|Q3SWS8|RAE1L_RAT mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1

 Score =  116 bits (290), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)

Query: 2   VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
           VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query: 58  HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
           +++    +K NFTFKCHR      S           AP+    Y V            + 
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280

Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
           F  +H T AT GSDG F+FWDKD++ +LK 
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Rattus norvegicus (taxid: 10116)

>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1

 Score =  116 bits (290), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)

Query: 2   VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
           VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query: 58  HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
           +++    +K NFTFKCHR      S           AP+    Y V            + 
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280

Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
           F  +H T AT GSDG F+FWDKD++ +LK 
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Sus scrofa (taxid: 9823)

>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)

Query: 2   VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
           VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query: 58  HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
           +++    +K NFTFKCHR      S           AP+    Y V            + 
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280

Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
           F  +H T AT GSDG F+FWDKD++ +LK 
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Pongo abelii (taxid: 9601)

>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)

Query: 2   VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
           VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query: 58  HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
           +++    +K NFTFKCHR      S           AP+    Y V            + 
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280

Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
           F  +H T AT GSDG F+FWDKD++ +LK 
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 30/151 (19%)

Query: 2   VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
           VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIH 243

Query: 58  HLDDSQQSK-NFTFKCHR-DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIV 115
           +++    +K NFTFKCHR +G+ T +     ++ A                        +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNA------------------------I 279

Query: 116 LFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
            F  +H T AT GSDG F+FWDKD++ +LK 
Sbjct: 280 SFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Danio rerio (taxid: 7955)

>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)

Query: 2   VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
           VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query: 58  HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
           +++    +K NFTFKCHR      S           AP+    Y V            + 
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280

Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
           F  +H T AT GSDG F+FWDKD++ +LK 
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Mus musculus (taxid: 10090)

>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)

Query: 2   VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
           VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query: 58  HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
           +++    +K NFTFKCHR      S           AP+    Y V            + 
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280

Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
           F  +H T AT GSDG F+FWDKD++ +LK 
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Bos taurus (taxid: 9913)

>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 86/150 (57%), Gaps = 28/150 (18%)

Query: 2   VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
           VV TA R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct: 184 VVATAGRGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query: 58  HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
           +++    +K NFTFKCHR      S           AP+    Y V            + 
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280

Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
           F  +H T AT GSDG F+FWDKD++ +LK 
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
225447856	350	PREDICTED: rae1-like protein At1g80670 [	0.795	0.334	0.680	7e-49
225443109	345	PREDICTED: rae1-like protein At1g80670 [	0.795	0.339	0.680	1e-48
115475045	342	Os08g0176800 [Oryza sativa Japonica Grou	0.795	0.342	0.673	2e-48
326491763	343	predicted protein [Hordeum vulgare subsp	0.795	0.341	0.666	2e-48
297839869	349	transducin family protein [Arabidopsis l	0.795	0.335	0.680	3e-48
15220198	349	Rae1-like protein [Arabidopsis thaliana]	0.795	0.335	0.673	8e-48
357517225	400	Pre-mRNA-splicing factor prp46 [Medicago	0.795	0.292	0.666	9e-48
388514275	252	unknown [Medicago truncatula]	0.795	0.464	0.666	2e-47
226508590	343	rae1-like protein [Zea mays] gi|19563630	0.795	0.341	0.659	2e-47
255572775	349	plant poly(A)+ RNA export protein, putat	0.795	0.335	0.659	3e-47

>gi|225447856|ref|XP_002271645.1| PREDICTED: rae1-like protein At1g80670 [Vitis vinifera] gi|296081523|emb|CBI20046.3| unnamed protein product [Vitis vinifera]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 100/147 (68%), Positives = 105/147 (71%), Gaps = 30/147 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
           MVVGTADRNL+VFNLQNPQTEFKRI SPLKYQ RCVAAFPDQQGF VGSIEGRVGVHHLD
Sbjct: 169 MVVGTADRNLIVFNLQNPQTEFKRITSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 228

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
           D+QQSKNFTFKCHR+G+E  SV S                                F  +
Sbjct: 229 DAQQSKNFTFKCHREGNEIYSVNSLN------------------------------FHPV 258

Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
           HHTFATAGSDGAFNFWDKDSKQRLK  
Sbjct: 259 HHTFATAGSDGAFNFWDKDSKQRLKAM 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443109|ref|XP_002274315.1| PREDICTED: rae1-like protein At1g80670 [Vitis vinifera] gi|297743618|emb|CBI36485.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/147 (68%), Positives = 105/147 (71%), Gaps = 30/147 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
           MVVGTADRNL+VFNLQNPQTEFKRI SPLKYQ RCVAAFPDQQGF VGSIEGRVGVHHLD
Sbjct: 165 MVVGTADRNLIVFNLQNPQTEFKRITSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 224

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
           D+QQSKNFTFKCHR+G+E  SV S                                F  +
Sbjct: 225 DAQQSKNFTFKCHREGNEIYSVNSLN------------------------------FHPV 254

Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
           HHTFATAGSDGAFNFWDKDSKQRLK  
Sbjct: 255 HHTFATAGSDGAFNFWDKDSKQRLKAM 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115475045|ref|NP_001061119.1| Os08g0176800 [Oryza sativa Japonica Group] gi|38636797|dbj|BAD03038.1| putative RAE1 (RNA export 1, S.pombe) homolog [Oryza sativa Japonica Group] gi|38636974|dbj|BAD03234.1| putative RAE1 (RNA export 1, S.pombe) homolog [Oryza sativa Japonica Group] gi|113623088|dbj|BAF23033.1| Os08g0176800 [Oryza sativa Japonica Group] gi|125560338|gb|EAZ05786.1| hypothetical protein OsI_28020 [Oryza sativa Indica Group] gi|125602377|gb|EAZ41702.1| hypothetical protein OsJ_26237 [Oryza sativa Japonica Group] gi|215767132|dbj|BAG99360.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 106/147 (72%), Gaps = 30/147 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
           M+VGTADRNLVVFNLQNPQTEFKRI SPLKYQ RC+AAFPDQQGF VGSIEGRVGVHH+D
Sbjct: 162 MIVGTADRNLVVFNLQNPQTEFKRIQSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHID 221

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
           DSQQSKNFTFKCHR+G++  SV S                                F  +
Sbjct: 222 DSQQSKNFTFKCHREGNDIFSVNSLN------------------------------FHPV 251

Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
           HHTFATAGSDGAFNFWDKDSKQRLK F
Sbjct: 252 HHTFATAGSDGAFNFWDKDSKQRLKAF 278

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326491763|dbj|BAJ94359.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326508694|dbj|BAJ95869.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/147 (66%), Positives = 106/147 (72%), Gaps = 30/147 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
           M+VGTADRN+V+FNLQNPQTEFKRI SPLKYQ RCVAAFPDQQGF VGSIEGRVGVHH+D
Sbjct: 163 MIVGTADRNIVIFNLQNPQTEFKRIQSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHID 222

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
           DSQQSKNFTFKCHR+G++  SV S                                F  +
Sbjct: 223 DSQQSKNFTFKCHREGNDIFSVNSLN------------------------------FHPV 252

Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
           HHTFATAGSDGAFNFWDKDSKQRLK F
Sbjct: 253 HHTFATAGSDGAFNFWDKDSKQRLKAF 279

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839869|ref|XP_002887816.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297333657|gb|EFH64075.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 100/147 (68%), Positives = 103/147 (70%), Gaps = 30/147 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
           MVVGTADRNL+VFNLQNPQTEFKRI SPLKYQ RCV AFPDQQGF VGSIEGRVGVHHLD
Sbjct: 168 MVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLD 227

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
           DSQQSKNFTFKCHRDG+E  SV S                                F  +
Sbjct: 228 DSQQSKNFTFKCHRDGNEIYSVNSLN------------------------------FHPV 257

Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
           H TFATAGSDGAFNFWDKDSKQRLK  
Sbjct: 258 HGTFATAGSDGAFNFWDKDSKQRLKAM 284

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220198|ref|NP_178182.1| Rae1-like protein [Arabidopsis thaliana] gi|83305440|sp|Q38942.2|RAE1L_ARATH RecName: Full=Rae1-like protein At1g80670 gi|6503279|gb|AAF14655.1|AC011713_3 F23A5.2(form2) [Arabidopsis thaliana] gi|21593271|gb|AAM65220.1| mRNA export protein, putative [Arabidopsis thaliana] gi|94442413|gb|ABF18994.1| At1g80670 [Arabidopsis thaliana] gi|332198314|gb|AEE36435.1| Rae1-like protein [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 103/147 (70%), Gaps = 30/147 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
           MVVGTADRNL+VFNLQNPQTEFKRI SPLKYQ RCV AFPDQQGF VGSIEGRVGVHHLD
Sbjct: 168 MVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLD 227

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
           DSQQSKNFTFKCHRDG++  SV S                                F  +
Sbjct: 228 DSQQSKNFTFKCHRDGNDIYSVNSLN------------------------------FHPV 257

Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
           H TFATAGSDGAFNFWDKDSKQRLK  
Sbjct: 258 HGTFATAGSDGAFNFWDKDSKQRLKAM 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517225|ref|XP_003628901.1| Pre-mRNA-splicing factor prp46 [Medicago truncatula] gi|355522923|gb|AET03377.1| Pre-mRNA-splicing factor prp46 [Medicago truncatula]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 98/147 (66%), Positives = 104/147 (70%), Gaps = 30/147 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
           MVVGTADRNL+VFNLQNPQTE+KRI SPLKYQ RCVAAFPDQQGF VGSIEGRVGVHHLD
Sbjct: 167 MVVGTADRNLIVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 226

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
           D+QQSKNFTFKCHR+ +E  SV S                                F  +
Sbjct: 227 DAQQSKNFTFKCHRESNEIYSVNSLN------------------------------FHPV 256

Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
           HHTFATAGSDGAFNFWDKDSKQRLK  
Sbjct: 257 HHTFATAGSDGAFNFWDKDSKQRLKAM 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514275|gb|AFK45199.1| unknown [Medicago truncatula]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/147 (66%), Positives = 104/147 (70%), Gaps = 30/147 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
           MVVGTADRNL+VFNLQNPQTE+KRI SPLKYQ RCVAAFPDQQGF VGSIEGRVGVHHLD
Sbjct: 71  MVVGTADRNLIVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 130

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
           D+QQSKNFTFKCHR+ +E  SV S                                F  +
Sbjct: 131 DAQQSKNFTFKCHRESNEIYSVNSLN------------------------------FHPV 160

Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
           HHTFATAGSDGAFNFWDKDSKQRLK  
Sbjct: 161 HHTFATAGSDGAFNFWDKDSKQRLKAM 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226508590|ref|NP_001150048.1| rae1-like protein [Zea mays] gi|195636308|gb|ACG37622.1| rae1-like protein [Zea mays] gi|223973949|gb|ACN31162.1| unknown [Zea mays] gi|413916882|gb|AFW56814.1| Rae1-like protein [Zea mays]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/147 (65%), Positives = 106/147 (72%), Gaps = 30/147 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
           M+VGTADR+LVVFNLQNPQTEFKRI SPLKYQ RC+AAFPDQQGF VGSIEGRVGVHH+D
Sbjct: 163 MIVGTADRHLVVFNLQNPQTEFKRIQSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHID 222

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
           D+QQSKNFTFKCHR+G++  SV S                                F  +
Sbjct: 223 DAQQSKNFTFKCHREGNDIFSVNSLN------------------------------FHPV 252

Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
           HHTFATAGSDGAFNFWDKDSKQRLK F
Sbjct: 253 HHTFATAGSDGAFNFWDKDSKQRLKAF 279

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572775|ref|XP_002527320.1| plant poly(A)+ RNA export protein, putative [Ricinus communis] gi|223533320|gb|EEF35072.1| plant poly(A)+ RNA export protein, putative [Ricinus communis]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/147 (65%), Positives = 105/147 (71%), Gaps = 30/147 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
           MVVGTADRNL+VFNLQ PQTE+KRI SPLKYQ RCVAAFPDQQGF VGSIEGRVGVHHLD
Sbjct: 168 MVVGTADRNLIVFNLQQPQTEYKRITSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 227

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
           D+QQ+KNFTFKCHRDG++                     Y V  L+          F  +
Sbjct: 228 DAQQNKNFTFKCHRDGND--------------------IYSVNALN----------FHPV 257

Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
           HHTFATAGSDGAFNFWDKDSKQRLK  
Sbjct: 258 HHTFATAGSDGAFNFWDKDSKQRLKAM 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2025732	349	RAE1 "AT1G80670" [Arabidopsis	0.571	0.240	0.880	8.7e-49
UNIPROTKB|G4NDD2	358	MGG_00946 "Poly(A)+ RNA export	0.591	0.243	0.477	2.3e-28
CGD|CAL0001281	383	orf19.1095 [Candida albicans (	0.979	0.375	0.456	2.4e-28
UNIPROTKB|Q59QW3	383	GLE2 "Likely WD40 repeat nucle	0.979	0.375	0.456	2.4e-28
ZFIN|ZDB-GENE-040426-1029	368	rae1 "RAE1 RNA export 1 homolo	0.544	0.217	0.534	1.2e-27
UNIPROTKB|Q5E9A4	368	RAE1 "mRNA export factor" [Bos	0.530	0.211	0.547	1.3e-27
UNIPROTKB|E2RSV2	368	RAE1 "Uncharacterized protein"	0.530	0.211	0.547	1.3e-27
UNIPROTKB|P78406	368	RAE1 "mRNA export factor" [Hom	0.530	0.211	0.547	1.3e-27
UNIPROTKB|A5GFN6	368	RAE1 "mRNA export factor" [Sus	0.530	0.211	0.547	1.3e-27
MGI|MGI:1913929	368	Rae1 "RAE1 RNA export 1 homolo	0.530	0.211	0.547	1.3e-27

TAIR|locus:2025732 RAE1 "AT1G80670" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
 Identities = 74/84 (88%), Positives = 77/84 (91%)

Query:     1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
             MVVGTADRNL+VFNLQNPQTEFKRI SPLKYQ RCV AFPDQQGF VGSIEGRVGVHHLD
Sbjct:   168 MVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLD 227

Query:    61 DSQQSKNFTFKCHRDGSETCSVIS 84
             DSQQSKNFTFKCHRDG++  SV S
Sbjct:   228 DSQQSKNFTFKCHRDGNDIYSVNS 251

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

UNIPROTKB|G4NDD2 MGG_00946 "Poly(A)+ RNA export protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 220 (82.5 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
 Identities = 42/88 (47%), Positives = 58/88 (65%)

Query:     1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
             +V+GTADR + V NL  PQ  +K + SPLK+Q R V+ F D  GF +GSIEGR  + +++
Sbjct:   176 LVIGTADRYINVVNLNEPQKFYKTLQSPLKWQTRVVSCFTDANGFAIGSIEGRCAIQYVE 235

Query:    61 DSQQSKNFTFKCHRDGSETCSVISFTSI 88
             D   S NF+FKCHRD  +  SV S  ++
Sbjct:   236 DKDSSSNFSFKCHRDAPQG-SVTSVHAV 262

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0001281 orf19.1095 [Candida albicans (taxid:5476)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 68/149 (45%), Positives = 91/149 (61%)

Query:     1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
             +VVG ADR++ + +L NPQ  FK   SPLK+Q RCV+ +P   GF VGSIEGR  + ++ 
Sbjct:   180 LVVGCADRHISIIDLNNPQQIFKSSQSPLKWQTRCVSCYPQANGFAVGSIEGRCAIQYIT 239

Query:    61 DSQQSK-NFTFKCHR-DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFV 118
             +++Q K  F+FKCHR  G  T    + T   AG   + +S       H +  S   + F 
Sbjct:   240 ENEQKKFGFSFKCHRKSGGNTTGTTNTTGG-AGAGLRTTSSSNANESHAY--SVNAISFH 296

Query:   119 QIHHTFATAGSDGAFNFWDKDSKQRLKVF 147
              I+ TF+TAGSDG F FWDKD+KQRLK F
Sbjct:   297 PIYGTFSTAGSDGTFCFWDKDAKQRLKSF 325

GO:0003674 "molecular_function" evidence=ND

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031081 "nuclear pore distribution" evidence=IEA

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:2000728 "regulation of mRNA export from nucleus in response to heat stress" evidence=IEA

GO:0000973 "posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery" evidence=IEA

UNIPROTKB|Q59QW3 GLE2 "Likely WD40 repeat nuclear pore protein Gle2p" [Candida albicans SC5314 (taxid:237561)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 68/149 (45%), Positives = 91/149 (61%)

Query:     1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
             +VVG ADR++ + +L NPQ  FK   SPLK+Q RCV+ +P   GF VGSIEGR  + ++ 
Sbjct:   180 LVVGCADRHISIIDLNNPQQIFKSSQSPLKWQTRCVSCYPQANGFAVGSIEGRCAIQYIT 239

Query:    61 DSQQSK-NFTFKCHR-DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFV 118
             +++Q K  F+FKCHR  G  T    + T   AG   + +S       H +  S   + F 
Sbjct:   240 ENEQKKFGFSFKCHRKSGGNTTGTTNTTGG-AGAGLRTTSSSNANESHAY--SVNAISFH 296

Query:   119 QIHHTFATAGSDGAFNFWDKDSKQRLKVF 147
              I+ TF+TAGSDG F FWDKD+KQRLK F
Sbjct:   297 PIYGTFSTAGSDGTFCFWDKDAKQRLKSF 325

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040426-1029 rae1 "RAE1 RNA export 1 homolog (S. pombe)" [Danio rerio (taxid:7955)]

 Score = 228 (85.3 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
 Identities = 46/86 (53%), Positives = 63/86 (73%)

Query:     2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
             VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct:   184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIH 243

Query:    58 HLDDSQQSK-NFTFKCHR-DGSETCS 81
             +++    +K NFTFKCHR +G+ T +
Sbjct:   244 YINPPNPAKDNFTFKCHRSNGTNTAT 269

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5E9A4 RAE1 "mRNA export factor" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
 Identities = 46/84 (54%), Positives = 62/84 (73%)

Query:     2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
             VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct:   184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query:    58 HLDDSQQSK-NFTFKCHR-DGSET 79
             +++    +K NFTFKCHR +G+ T
Sbjct:   244 YINPPNPAKDNFTFKCHRSNGTNT 267

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|E2RSV2 RAE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 227 (85.0 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
 Identities = 46/84 (54%), Positives = 62/84 (73%)

Query:     2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
             VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct:   184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query:    58 HLDDSQQSK-NFTFKCHR-DGSET 79
             +++    +K NFTFKCHR +G+ T
Sbjct:   244 YINPPNPAKDNFTFKCHRSNGTNT 267

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|P78406 RAE1 "mRNA export factor" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
 Identities = 46/84 (54%), Positives = 62/84 (73%)

Query:     2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
             VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct:   184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query:    58 HLDDSQQSK-NFTFKCHR-DGSET 79
             +++    +K NFTFKCHR +G+ T
Sbjct:   244 YINPPNPAKDNFTFKCHRSNGTNT 267

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISS

GO:0003723 "RNA binding" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0005640 "nuclear outer membrane" evidence=TAS

GO:0005643 "nuclear pore" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|A5GFN6 RAE1 "mRNA export factor" [Sus scrofa (taxid:9823)]

 Score = 227 (85.0 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
 Identities = 46/84 (54%), Positives = 62/84 (73%)

Query:     2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
             VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct:   184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query:    58 HLDDSQQSK-NFTFKCHR-DGSET 79
             +++    +K NFTFKCHR +G+ T
Sbjct:   244 YINPPNPAKDNFTFKCHRSNGTNT 267

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

MGI|MGI:1913929 Rae1 "RAE1 RNA export 1 homolog (S. pombe)" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
 Identities = 46/84 (54%), Positives = 62/84 (73%)

Query:     2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
             VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct:   184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243

Query:    58 HLDDSQQSK-NFTFKCHR-DGSET 79
             +++    +K NFTFKCHR +G+ T
Sbjct:   244 YINPPNPAKDNFTFKCHRSNGTNT 267

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031579001	SubName- Full=Chromosome chr12 scaffold_57, whole genome shotgun sequence; (350 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00000457001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (877 aa)					•	•			0.829
	GSVIVG00014166001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (333 aa)			•						0.488
	GSVIVG00030682001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (326 aa)			•	•					0.473
	GSVIVG00000022001	SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (461 aa)			•	•					0.464
	GSVIVG00025117001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (350 aa)			•						0.464
	GSVIVG00020679001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (338 aa)			•		•				0.463
	GSVIVG00003115001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (352 aa)			•						0.462
	GSVIVG00003105001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (328 aa)			•						0.456
	GSVIVG00017915001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa)			•						0.452
	GSVIVG00001683001	SubName- Full=Chromosome chr13 scaffold_120, whole genome shotgun sequence; (422 aa)			•						0.449

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.86
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.84
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.84
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.84
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.83
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.82
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.81
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.81
KOG0286	343	consensus G-protein beta subunit [General function	99.8
PTZ00421	493	coronin; Provisional	99.8
KOG0266	456	consensus WD40 repeat-containing protein [General	99.8
KOG0286	343	consensus G-protein beta subunit [General function	99.78
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.77
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.77
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.77
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.76
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.75
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.75
PTZ00421	493	coronin; Provisional	99.75
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.75
KOG0645	312	consensus WD40 repeat protein [General function pr	99.75
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.75
PTZ00420	568	coronin; Provisional	99.74
KOG0266	456	consensus WD40 repeat-containing protein [General	99.74
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.74
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.73
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.73
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.72
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.72
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.72
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.72
KOG0296	399	consensus Angio-associated migratory cell protein	99.72
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.7
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.7
KOG0643	327	consensus Translation initiation factor 3, subunit	99.7
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.7
PTZ00420	568	coronin; Provisional	99.69
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.69
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.69
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.68
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.68
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.68
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.67
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.67
PLN00181	793	protein SPA1-RELATED; Provisional	99.67
PLN00181	793	protein SPA1-RELATED; Provisional	99.67
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.67
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.65
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.65
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.65
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.65
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.64
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.63
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.63
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.63
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.62
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.62
KOG0289	506	consensus mRNA splicing factor [General function p	99.62
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.62
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.62
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.62
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.6
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.6
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.59
KOG0267	825	consensus Microtubule severing protein katanin p80	99.58
KOG0645	312	consensus WD40 repeat protein [General function pr	99.58
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.58
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.58
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.58
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.57
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.55
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.55
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.55
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.54
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.54
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.53
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.53
KOG0643	327	consensus Translation initiation factor 3, subunit	99.52
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.52
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.52
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.52
KOG0646	476	consensus WD40 repeat protein [General function pr	99.52
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.52
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.49
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.49
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.48
KOG1273	405	consensus WD40 repeat protein [General function pr	99.48
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.48
KOG0267	825	consensus Microtubule severing protein katanin p80	99.48
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.47
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.47
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.46
KOG0639	705	consensus Transducin-like enhancer of split protei	99.45
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.45
KOG0289	506	consensus mRNA splicing factor [General function p	99.45
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.45
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.44
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.44
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.44
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.43
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.42
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.42
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.41
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.41
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.4
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.4
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.39
KOG1273	405	consensus WD40 repeat protein [General function pr	99.39
KOG1274	933	consensus WD40 repeat protein [General function pr	99.39
KOG1539	910	consensus WD repeat protein [General function pred	99.38
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.38
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.38
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.38
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.37
KOG0296	399	consensus Angio-associated migratory cell protein	99.37
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.36
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.36
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.35
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.35
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.34
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.34
KOG1274	933	consensus WD40 repeat protein [General function pr	99.34
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.33
KOG0646	476	consensus WD40 repeat protein [General function pr	99.33
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.33
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.33
KOG2048	691	consensus WD40 repeat protein [General function pr	99.32
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.32
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.32
KOG2096	420	consensus WD40 repeat protein [General function pr	99.32
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.31
KOG1539	910	consensus WD repeat protein [General function pred	99.29
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.29
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.29
KOG0641	350	consensus WD40 repeat protein [General function pr	99.28
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.28
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.28
KOG0639	705	consensus Transducin-like enhancer of split protei	99.27
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.27
KOG1188	376	consensus WD40 repeat protein [General function pr	99.27
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.26
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.24
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.24
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.21
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.18
KOG0641	350	consensus WD40 repeat protein [General function pr	99.18
KOG2055	514	consensus WD40 repeat protein [General function pr	99.18
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.16
KOG2048	691	consensus WD40 repeat protein [General function pr	99.16
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.15
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.15
KOG0649	325	consensus WD40 repeat protein [General function pr	99.15
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.15
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.14
KOG4328	498	consensus WD40 protein [Function unknown]	99.11
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.11
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.08
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.08
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.07
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.07
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.07
KOG4328	498	consensus WD40 protein [Function unknown]	99.05
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.02
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.02
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.01
KOG2055	514	consensus WD40 repeat protein [General function pr	99.01
COG2319	466	FOG: WD40 repeat [General function prediction only	99.0
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.99
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.94
COG2319	466	FOG: WD40 repeat [General function prediction only	98.94
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.94
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.93
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.91
KOG2096	420	consensus WD40 repeat protein [General function pr	98.91
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.86
PRK11028	330	6-phosphogluconolactonase; Provisional	98.85
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.84
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.82
KOG0649	325	consensus WD40 repeat protein [General function pr	98.82
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.8
KOG1963	792	consensus WD40 repeat protein [General function pr	98.8
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.79
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.75
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.75
KOG2695	425	consensus WD40 repeat protein [General function pr	98.74
KOG1188	376	consensus WD40 repeat protein [General function pr	98.73
KOG4227	609	consensus WD40 repeat protein [General function pr	98.73
PRK01742	429	tolB translocation protein TolB; Provisional	98.72
KOG1310	758	consensus WD40 repeat protein [General function pr	98.7
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.69
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.68
PRK11028	330	6-phosphogluconolactonase; Provisional	98.67
PRK02889	427	tolB translocation protein TolB; Provisional	98.67
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.66
KOG2139	445	consensus WD40 repeat protein [General function pr	98.66
KOG4547	541	consensus WD40 repeat-containing protein [General	98.65
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.64
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.62
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.62
PRK01742	429	tolB translocation protein TolB; Provisional	98.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.57
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.56
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.55
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.53
KOG2321	703	consensus WD40 repeat protein [General function pr	98.52
KOG1310	758	consensus WD40 repeat protein [General function pr	98.51
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.51
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.48
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.47
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.44
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.44
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.44
KOG2139	445	consensus WD40 repeat protein [General function pr	98.43
KOG2315	566	consensus Predicted translation initiation factor	98.42
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.41
KOG2321	703	consensus WD40 repeat protein [General function pr	98.39
COG4946	668	Uncharacterized protein related to the periplasmic	98.37
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.37
PRK05137	435	tolB translocation protein TolB; Provisional	98.34
PRK04922	433	tolB translocation protein TolB; Provisional	98.34
PRK05137	435	tolB translocation protein TolB; Provisional	98.34
PRK03629	429	tolB translocation protein TolB; Provisional	98.32
KOG4547	541	consensus WD40 repeat-containing protein [General	98.32
PRK03629	429	tolB translocation protein TolB; Provisional	98.3
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.24
KOG1963	792	consensus WD40 repeat protein [General function pr	98.22
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.19
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.18
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.18
PRK04922	433	tolB translocation protein TolB; Provisional	98.17
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.17
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.06
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.05
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.04
KOG1334	559	consensus WD40 repeat protein [General function pr	98.04
PRK04792	448	tolB translocation protein TolB; Provisional	98.03
KOG4227	609	consensus WD40 repeat protein [General function pr	98.02
PRK01029	428	tolB translocation protein TolB; Provisional	98.0
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.0
PRK00178	430	tolB translocation protein TolB; Provisional	97.99
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.98
PRK00178	430	tolB translocation protein TolB; Provisional	97.98
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.97
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.94
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	97.93
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.92
PRK02889	427	tolB translocation protein TolB; Provisional	97.91
PRK04792	448	tolB translocation protein TolB; Provisional	97.91
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.91
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.87
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.87
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.85
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.83
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.81
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.73
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.72
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.71
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.71
PRK01029	428	tolB translocation protein TolB; Provisional	97.65
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.6
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.56
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.56
KOG1334	559	consensus WD40 repeat protein [General function pr	97.56
KOG3621	726	consensus WD40 repeat-containing protein [General	97.55
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.53
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.43
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.43
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.42
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.41
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.32
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.32
KOG2444	238	consensus WD40 repeat protein [General function pr	97.28
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.28
PRK04043	419	tolB translocation protein TolB; Provisional	97.27
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.26
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.26
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.24
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.2
KOG2695	425	consensus WD40 repeat protein [General function pr	97.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.14
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.13
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.1
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.04
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.03
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.99
KOG1409	404	consensus Uncharacterized conserved protein, conta	96.92
KOG2314	698	consensus Translation initiation factor 3, subunit	96.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	96.89
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	96.89
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.86
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.76
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.75
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.69
PRK04043	419	tolB translocation protein TolB; Provisional	96.66
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.6
KOG2314	698	consensus Translation initiation factor 3, subunit	96.56
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.54
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.52
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.46
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.44
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.37
PRK02888	635	nitrous-oxide reductase; Validated	96.37
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.33
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.32
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.19
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.18
PRK02888	635	nitrous-oxide reductase; Validated	96.1
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.06
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.02
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.97
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.81
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.8
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.77
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.77
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.76
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	95.7
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	95.69
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.68
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.62
KOG1912	1062	consensus WD40 repeat protein [General function pr	95.49
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	95.2
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.2
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.11
KOG3621	726	consensus WD40 repeat-containing protein [General	94.97
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.96
KOG1912	1062	consensus WD40 repeat protein [General function pr	94.93
KOG2395	644	consensus Protein involved in vacuole import and d	94.88
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.62
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.43
COG4946	668	Uncharacterized protein related to the periplasmic	94.41
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.39
COG3391	381	Uncharacterized conserved protein [Function unknow	94.39
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.19
KOG2444	238	consensus WD40 repeat protein [General function pr	94.06
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.92
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.76
KOG1008	783	consensus Uncharacterized conserved protein, conta	93.6
KOG1008	783	consensus Uncharacterized conserved protein, conta	93.35
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.13
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.12
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.11
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.93
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	92.82
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	92.76
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.45
KOG2315	566	consensus Predicted translation initiation factor	92.42
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.41
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.25
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.07
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.76
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.67
COG3391	381	Uncharacterized conserved protein [Function unknow	91.58
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.53
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.42
KOG2395	644	consensus Protein involved in vacuole import and d	91.21
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	91.1
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	90.96
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	90.72
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	90.09
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.85
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	89.79
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.44
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.36
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.32
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.27
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	88.71
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	88.68
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.56
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.55
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.39
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.9
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	87.59
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	86.88
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	86.54
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	86.41
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	86.3
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	86.23
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.16
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	85.17
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.45
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	84.43
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	84.2
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	82.98
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	82.93
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.83
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	82.04
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	81.85
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	81.66
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	81.49
PRK13616	591	lipoprotein LpqB; Provisional	81.12
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	81.05
PRK10115	686	protease 2; Provisional	80.13

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=7.6e-23  Score=157.55  Aligned_cols=141  Identities=17%  Similarity=0.242  Sum_probs=111.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      ||+|+.||+|++|++.+.. ++..+. +|...|..++|+|+|++|++++-|.+-+|  ||++++..+....||.....  
T Consensus       234 lat~s~Dgtvklw~~~~e~-~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRl--WD~~tk~ElL~QEGHs~~v~~i  309 (459)
T KOG0272|consen  234 LATASADGTVKLWKLSQET-PLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRL--WDLETKSELLLQEGHSKGVFSI  309 (459)
T ss_pred             eeeeccCCceeeeccCCCc-chhhhh-cchhhheeeeecCCCceeeecccccchhh--cccccchhhHhhccccccccee
Confidence            6899999999999999863 555554 34456899999999999999999999999  88888777777788886533  


Q ss_pred             EEeeccceeeeecCCCcceeeeeee--eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +|..+. .++++|+.|.+-..|++.  +..+++.||    ++++|+|.|..|||||+|++++|||++.++.+++
T Consensus       310 af~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~  382 (459)
T KOG0272|consen  310 AFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT  382 (459)
T ss_pred             EecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence            232222 345667777655555554  456777777    5799999999999999999999999999888775

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=2.5e-21  Score=144.31  Aligned_cols=117  Identities=50%  Similarity=0.834  Sum_probs=103.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC--CcceeEEEeccCC--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ--QSKNFTFKCHRDG--   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~--~~~~~~~~~h~~~--   76 (147)
                      |++|+.|..|.+||+|+.+.+++..+++.+++++||++.|++.-+++++.||+|.+.++|.+.  ....+.|+||+..  
T Consensus       148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~  227 (323)
T KOG1036|consen  148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK  227 (323)
T ss_pred             EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC
Confidence            578899999999999998877766677888999999999999999999999999999898872  4567899999864  


Q ss_pred             --ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           77 --SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        77 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                        ...+||+++                              +|||-.+.|||||+||.|.+||+..+|++++|
T Consensus       228 ~~~~~yPVNai------------------------------~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~  270 (323)
T KOG1036|consen  228 DTEIIYPVNAI------------------------------AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL  270 (323)
T ss_pred             CceEEEEecee------------------------------EeccccceEEecCCCceEEEccCcchhhhhhc
Confidence              246788888                              99999999999999999999999999998875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.84  E-value=4.4e-21  Score=156.31  Aligned_cols=102  Identities=19%  Similarity=0.320  Sum_probs=91.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +|+||.|.+||+||+.++.. +..+ .+|+.+|.+|+|||+|++||+|+.||.|+|  ||+.+++.+..+.+|+.     
T Consensus       550 ~aTGSsD~tVRlWDv~~G~~-VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i--WDl~~~~~v~~l~~Ht~-----  620 (707)
T KOG0263|consen  550 VATGSSDRTVRLWDVSTGNS-VRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIKI--WDLANGSLVKQLKGHTG-----  620 (707)
T ss_pred             cccCCCCceEEEEEcCCCcE-EEEe-cCCCCceEEEEEcCCCceEeecccCCcEEE--EEcCCCcchhhhhcccC-----
Confidence            58999999999999999975 4545 468889999999999999999999999999  88898999999999965     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      .++++                              .||+||+.||+||+|.+|++||+...
T Consensus       621 ti~Sl------------------------------sFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  621 TIYSL------------------------------SFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ceeEE------------------------------EEecCCCEEEecCCCCeEEEEEchhh
Confidence            47777                              99999999999999999999998654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.84  E-value=2e-20  Score=152.56  Aligned_cols=143  Identities=13%  Similarity=0.092  Sum_probs=115.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~   78 (147)
                      |++||+|++||||.+.+....+  ...+|..||..+.|+|-|-+||+++-|++.++|.-|  ..+++..|.||-...  .
T Consensus       466 LlScSED~svRLWsl~t~s~~V--~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d--~~~PlRifaghlsDV~cv  541 (707)
T KOG0263|consen  466 LLSCSEDSSVRLWSLDTWSCLV--IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD--HNKPLRIFAGHLSDVDCV  541 (707)
T ss_pred             eeeccCCcceeeeecccceeEE--EecCCCcceeeEEecCCceEEEecCCCceeeeeecc--cCCchhhhcccccccceE
Confidence            6899999999999999986543  233677899999999999999999999999995444  467778888997653  2


Q ss_pred             EEeeccceeeeecCCCcceeeeeee-eeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVK-RLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+-+++.++.++|+|-+++.|.... ...+.|.||.    +++|||+|++||+|+.||.|.+||+.+++++.+|
T Consensus       542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l  615 (707)
T KOG0263|consen  542 SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL  615 (707)
T ss_pred             EECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence            4556776666666666777777554 3367889994    6999999999999999999999999998887653

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.84  E-value=9.4e-21  Score=146.07  Aligned_cols=142  Identities=13%  Similarity=0.080  Sum_probs=116.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~   78 (147)
                      |+|+|.|.+-++||+++++...  ...+|..+|.+++|.|||..+++|+.|..-+|  ||+|+++.+..|.+|..+.  .
T Consensus       276 L~TasfD~tWRlWD~~tk~ElL--~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv--WDlRtgr~im~L~gH~k~I~~V  351 (459)
T KOG0272|consen  276 LGTASFDSTWRLWDLETKSELL--LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV--WDLRTGRCIMFLAGHIKEILSV  351 (459)
T ss_pred             eeecccccchhhcccccchhhH--hhcccccccceeEecCCCceeeccCccchhhe--eecccCcEEEEecccccceeeE
Confidence            6899999999999999986532  23466678999999999999999999999999  8999999999999998763  4


Q ss_pred             EEeeccceeeeecCCCcceeeeeee-eeeeeeeceE----EEEEec-CCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVK-RLHLFVKSHV----IVLFVQ-IHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~fsp-dg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .++++..-+.++|+|..+++|.--. +....+++|.    .|.|+| .|.+|+|||.|++++||..++.+++++
T Consensus       352 ~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks  425 (459)
T KOG0272|consen  352 AFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS  425 (459)
T ss_pred             eECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence            6777775444556666666666333 3356789995    489999 569999999999999999999888765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=3.4e-20  Score=141.97  Aligned_cols=142  Identities=15%  Similarity=0.148  Sum_probs=105.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ||+++.||.|+|||+..+... .. .++|..+|+||.|.-+| ++++|+.|++|++  |+...|+...++++|.......
T Consensus       220 las~skDg~vrIWd~~~~~~~-~~-lsgHT~~VTCvrwGG~g-liySgS~DrtIkv--w~a~dG~~~r~lkGHahwvN~l  294 (480)
T KOG0271|consen  220 LASSSKDGSVRIWDTKLGTCV-RT-LSGHTASVTCVRWGGEG-LIYSGSQDRTIKV--WRALDGKLCRELKGHAHWVNHL  294 (480)
T ss_pred             eecccCCCCEEEEEccCceEE-EE-eccCccceEEEEEcCCc-eEEecCCCceEEE--EEccchhHHHhhcccchheeee
Confidence            688999999999999988643 33 34677899999997544 8899999999999  7777788888898886531111


Q ss_pred             eec-------------cc------------------------eeeeecCCCc-ceeeeee--eeeeeeeece----EEEE
Q 032092           81 SVI-------------SF------------------------TSILAGDAPK-YSSFYKV--KRLHLFVKSH----VIVL  116 (147)
Q Consensus        81 ~v~-------------~~------------------------~~~~~~~~~~-~~~~~~~--~~~~~~~~~~----~~~~  116 (147)
                      +.+             ..                        -.+.+|+|+. +.++.+.  .+...-+.||    +.++
T Consensus       295 alsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~  374 (480)
T KOG0271|consen  295 ALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS  374 (480)
T ss_pred             eccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE
Confidence            111             11                        1255666664 4444432  3344456666    6899


Q ss_pred             EecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       117 fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ||||++++|+|+-|+.|++||.++|+.+.+|
T Consensus       375 fSPd~r~IASaSFDkSVkLW~g~tGk~lasf  405 (480)
T KOG0271|consen  375 FSPDGRYIASASFDKSVKLWDGRTGKFLASF  405 (480)
T ss_pred             ECCCccEEEEeecccceeeeeCCCcchhhhh
Confidence            9999999999999999999999999988765

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.82  E-value=6.2e-19  Score=130.31  Aligned_cols=141  Identities=16%  Similarity=0.165  Sum_probs=106.8

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc--CCc--
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR--DGS--   77 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~--~~~--   77 (147)
                      ++|+.|+++++||+.+++ +..++. .|...|.+++|+||.+++++|+-|.+|++  |++- +...++...+.  +-.  
T Consensus        79 lS~swD~~lrlWDl~~g~-~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTikl--wnt~-g~ck~t~~~~~~~~WVsc  153 (315)
T KOG0279|consen   79 LSASWDGTLRLWDLATGE-STRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKL--WNTL-GVCKYTIHEDSHREWVSC  153 (315)
T ss_pred             EeccccceEEEEEecCCc-EEEEEE-ecCCceEEEEecCCCceeecCCCcceeee--eeec-ccEEEEEecCCCcCcEEE
Confidence            688999999999999985 445554 45567999999999999999999999999  7765 44555554442  211  


Q ss_pred             eEEeecc-ceeeeecCCCcceeeeeeeee--eeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           78 ETCSVIS-FTSILAGDAPKYSSFYKVKRL--HLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        78 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ..+.++. -..+++.+.|+....|+|...  ...+.||    +.+++||||...|+|+-||.+.+||+++++.++++
T Consensus       154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl  230 (315)
T KOG0279|consen  154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL  230 (315)
T ss_pred             EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence            2355553 455677777766666666543  2245666    45999999999999999999999999999998875

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=1.7e-19  Score=138.19  Aligned_cols=134  Identities=18%  Similarity=0.223  Sum_probs=105.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~   78 (147)
                      |++|++|.++.+|+-...++|+.+.. .|+.-|+.+.||||++++|+++-|..|++  ||-++|+.+.+|+||-...  .
T Consensus       339 lVSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~fSPd~r~IASaSFDkSVkL--W~g~tGk~lasfRGHv~~VYqv  415 (480)
T KOG0271|consen  339 LVSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSFSPDGRYIASASFDKSVKL--WDGRTGKFLASFRGHVAAVYQV  415 (480)
T ss_pred             eEEecCCceEEEecccccccchhhhh-chhhheeeEEECCCccEEEEeecccceee--eeCCCcchhhhhhhccceeEEE
Confidence            68999999999999988777766554 45567999999999999999999999999  8889999999999997643  2


Q ss_pred             EEeeccceeeeecCCCcceeee-eeeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEee
Q 032092           79 TCSVISFTSILAGDAPKYSSFY-KVKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd  137 (147)
                      +++.++-.+++++.|.+..+|. ..+++..-++||    +.+.|+|||+.+++|+.|+.+++|-
T Consensus       416 awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  416 AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            3444443334444444566555 234455567888    5799999999999999999999994

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.81  E-value=3.3e-19  Score=132.97  Aligned_cols=115  Identities=57%  Similarity=1.007  Sum_probs=95.9

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc----
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS----   77 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~----   77 (147)
                      ++|..++.|.+|+++++...++++.++.+++++|||+.+|.+.+|.|+.+|++.|.++|....+..++|+||+..+    
T Consensus       170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~  249 (347)
T KOG0647|consen  170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND  249 (347)
T ss_pred             EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence            4556666666666666555566777788899999999999999999999999999888886667889999999642    


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..|+|+++                              +|||....|+|+|+||++.+||.+.+.+|++
T Consensus       250 ~VYaVNsi------------------------------~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~  288 (347)
T KOG0647|consen  250 DVYAVNSI------------------------------AFHPVHGTLVTAGSDGTFSFWDKDARTKLKT  288 (347)
T ss_pred             ceEEecce------------------------------EeecccceEEEecCCceEEEecchhhhhhhc
Confidence            35677777                              9999999999999999999999988887765

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.80  E-value=1.4e-18  Score=129.30  Aligned_cols=139  Identities=14%  Similarity=0.155  Sum_probs=108.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC--c
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG--S   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~--~   77 (147)
                      |+|||.|.++-+||+.++++ ...+. .|...|.+|+++| +++.|++|+.|+..+|  ||.|++.-.++|.+|...  .
T Consensus       159 ilT~SGD~TCalWDie~g~~-~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~akl--WD~R~~~c~qtF~ghesDINs  234 (343)
T KOG0286|consen  159 ILTGSGDMTCALWDIETGQQ-TQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKL--WDVRSGQCVQTFEGHESDINS  234 (343)
T ss_pred             eEecCCCceEEEEEcccceE-EEEec-CCcccEEEEecCCCCCCeEEecccccceee--eeccCcceeEeecccccccce
Confidence            68999999999999999975 33443 5667799999999 8999999999999999  899999999999999864  2


Q ss_pred             eEEeeccceeeeecCCC-cceeeeeee-eee------eeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           78 ETCSVISFTSILAGDAP-KYSSFYKVK-RLH------LFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~-~~~~~~~~~-~~~------~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      ..+-++.. .+++|+|| .++.|.--. +..      ..+.|.++++||-.|++|.+|..|.++.+||.-+++.+
T Consensus       235 v~ffP~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v  308 (343)
T KOG0286|consen  235 VRFFPSGD-AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV  308 (343)
T ss_pred             EEEccCCC-eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceE
Confidence            23334443 45666666 455544211 222      23466789999999999999999999999998777654

>PTZ00421 coronin; Provisional

Probab=99.80  E-value=7.5e-19  Score=142.29  Aligned_cols=108  Identities=14%  Similarity=0.183  Sum_probs=88.5

Q ss_pred             CeEeecCCeEEEEECCCCc------cceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092            1 MVVGTADRNLVVFNLQNPQ------TEFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH   73 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~------~~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h   73 (147)
                      |++|+.||+|+|||+.++.      .++..+. .|...|.+|+|+|++ +.|++|+.|++|+|  ||+.+++....+.+|
T Consensus        91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI--WDl~tg~~~~~l~~h  167 (493)
T PTZ00421         91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNV--WDVERGKAVEVIKCH  167 (493)
T ss_pred             EEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEE--EECCCCeEEEEEcCC
Confidence            6899999999999998652      1233333 456679999999985 68999999999999  677777777788777


Q ss_pred             cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..     .+.++                              +|+|+|++||+|+.|++|+|||.++++.+.+
T Consensus       168 ~~-----~V~sl------------------------------a~spdG~lLatgs~Dg~IrIwD~rsg~~v~t  205 (493)
T PTZ00421        168 SD-----QITSL------------------------------EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS  205 (493)
T ss_pred             CC-----ceEEE------------------------------EEECCCCEEEEecCCCEEEEEECCCCcEEEE
Confidence            65     35666                              9999999999999999999999999887654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.80  E-value=6.4e-19  Score=141.73  Aligned_cols=104  Identities=22%  Similarity=0.364  Sum_probs=90.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.|++|+|||+.......+++. +|...|++++|+|+|+.+++|+.|++|+|  ||.++++....+.+|..     
T Consensus       218 l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvri--Wd~~~~~~~~~l~~hs~-----  289 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRI--WDVRTGECVRKLKGHSD-----  289 (456)
T ss_pred             EEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEE--EeccCCeEEEeeeccCC-----
Confidence            58899999999999955433345554 56678999999999999999999999999  78888899999999986     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      .+..+                              +|+|||++|++++.|+.|+|||+.+++
T Consensus       290 ~is~~------------------------------~f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  290 GISGL------------------------------AFSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             ceEEE------------------------------EECCCCCEEEEcCCCccEEEEECCCCc
Confidence            36666                              999999999999999999999999988

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.78  E-value=1e-17  Score=124.65  Aligned_cols=145  Identities=15%  Similarity=0.215  Sum_probs=109.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC--CC--cceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS--QQ--SKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~--~~--~~~~~~~~h~~~   76 (147)
                      |+++|.||++-|||.-+.++ .+.+.-+ ...|...||+|.|+++|+|+.|+.+.|++...+  ++  +....+.+|+..
T Consensus        70 ivSaSqDGklIvWDs~TtnK-~haipl~-s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgy  147 (343)
T KOG0286|consen   70 IVSASQDGKLIVWDSFTTNK-VHAIPLP-SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGY  147 (343)
T ss_pred             EEeeccCCeEEEEEcccccc-eeEEecC-ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccce
Confidence            57899999999999998765 3444322 246899999999999999999999999544433  11  344568889875


Q ss_pred             ceEEe-eccceeeeecCCCcceeeee-eeeeeeeeeceE----EEEEec-CCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           77 SETCS-VISFTSILAGDAPKYSSFYK-VKRLHLFVKSHV----IVLFVQ-IHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        77 ~~~~~-v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~fsp-dg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ..++. ++..-++++++|-++-.|.- ..+....|.||.    +++++| ++++|+||+.|+..+|||++++.+.++|
T Consensus       148 lScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF  225 (343)
T KOG0286|consen  148 LSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF  225 (343)
T ss_pred             eEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence            43322 34444566666666665553 234466788994    799999 8899999999999999999999999887

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.77  E-value=1.1e-17  Score=123.75  Aligned_cols=144  Identities=13%  Similarity=0.159  Sum_probs=107.8

Q ss_pred             CeEeecCCeEEEEECCCCcc----ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQT----EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~----~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      |++++.|.++-+|++...+.    +.+.+. +|...|..++.+|||++.++++.|+++++  ||+.+++....|.+|...
T Consensus        31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrl--WDl~~g~~t~~f~GH~~d  107 (315)
T KOG0279|consen   31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRL--WDLATGESTRRFVGHTKD  107 (315)
T ss_pred             EEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccceEEE--EEecCCcEEEEEEecCCc
Confidence            46789999999999977543    334444 46667999999999999999999999999  888888999999999987


Q ss_pred             ceEEeec--cceeeeecCCCcceeeeeeeeeeeeeece------EEEEEecC--CCeEEEeCCCCcEEEeecCCceeeec
Q 032092           77 SETCSVI--SFTSILAGDAPKYSSFYKVKRLHLFVKSH------VIVLFVQI--HHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        77 ~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~fspd--g~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ....+++  .-.++++++|-++..+.-+-...+.+..+      .-+.|+|.  ..+|+++|.|++|++||+++.++.++
T Consensus       108 Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~  187 (315)
T KOG0279|consen  108 VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT  187 (315)
T ss_pred             eEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc
Confidence            5544443  33334444444555555444444433222      24799997  68999999999999999999887766


Q ss_pred             C
Q 032092          147 F  147 (147)
Q Consensus       147 ~  147 (147)
                      |
T Consensus       188 ~  188 (315)
T KOG0279|consen  188 F  188 (315)
T ss_pred             c
Confidence            5

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.77  E-value=6.6e-18  Score=128.69  Aligned_cols=141  Identities=15%  Similarity=0.191  Sum_probs=110.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++|+.|++|+|||+.+++ +..++ .+|...++.+++|+-..|+-+++.|++|++  ||+..++.+..+-||-....+.
T Consensus       166 f~tgs~DrtikIwDlatg~-Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKC--wDLe~nkvIR~YhGHlS~V~~L  241 (460)
T KOG0285|consen  166 FATGSADRTIKIWDLATGQ-LKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKC--WDLEYNKVIRHYHGHLSGVYCL  241 (460)
T ss_pred             EEecCCCceeEEEEcccCe-EEEee-cchhheeeeeeecccCceEEEecCCCeeEE--EechhhhhHHHhccccceeEEE
Confidence            5899999999999999995 33333 346678999999999999999999999999  7777778888888887655444


Q ss_pred             eec-cce-eeeecCCCcceeeeeeeee-eeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           81 SVI-SFT-SILAGDAPKYSSFYKVKRL-HLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        81 ~v~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .+. .+. ++++|+|..+++|.--.+. +-++.||    .++.+.|....++||+.|++|++||+.-++-+.
T Consensus       242 ~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~  313 (460)
T KOG0285|consen  242 DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI  313 (460)
T ss_pred             eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence            443 122 3566888888887754444 4467888    468999988889999999999999998877654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.77  E-value=2e-19  Score=135.91  Aligned_cols=109  Identities=19%  Similarity=0.318  Sum_probs=97.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ||+|+.||+|++|-+++++.. .+++.+|...|.|+.||.|+..+++++-|.+++|  --..+|+.+..|+||..     
T Consensus       278 lAsGsqDGkIKvWri~tG~Cl-RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRi--HGlKSGK~LKEfrGHsS-----  349 (508)
T KOG0275|consen  278 LASGSQDGKIKVWRIETGQCL-RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRI--HGLKSGKCLKEFRGHSS-----  349 (508)
T ss_pred             hhccCcCCcEEEEEEecchHH-HHhhhhhccCeeEEEEccCcchhhcccccceEEE--eccccchhHHHhcCccc-----
Confidence            689999999999999999763 4566567678999999999999999999999999  67778999999999986     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      -++..                              .|++||..++++++||+|++|+.++.+|+.||
T Consensus       350 yvn~a------------------------------~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf  386 (508)
T KOG0275|consen  350 YVNEA------------------------------TFTDDGHHIISASSDGTVKVWHGKTTECLSTF  386 (508)
T ss_pred             cccce------------------------------EEcCCCCeEEEecCCccEEEecCcchhhhhhc
Confidence            37776                              99999999999999999999999999999887

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.76  E-value=3e-17  Score=120.09  Aligned_cols=136  Identities=18%  Similarity=0.252  Sum_probs=85.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-ceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~~   79 (147)
                      |++|++||++||||+|.....  +. -.+..+|++|..+|+..-|++|..+|.|++  ||+.+......+.-.... ...
T Consensus        98 MyTgseDgt~kIWdlR~~~~q--R~-~~~~spVn~vvlhpnQteLis~dqsg~irv--WDl~~~~c~~~liPe~~~~i~s  172 (311)
T KOG0315|consen   98 MYTGSEDGTVKIWDLRSLSCQ--RN-YQHNSPVNTVVLHPNQTELISGDQSGNIRV--WDLGENSCTHELIPEDDTSIQS  172 (311)
T ss_pred             EEecCCCceEEEEeccCcccc--hh-ccCCCCcceEEecCCcceEEeecCCCcEEE--EEccCCccccccCCCCCcceee
Confidence            579999999999999996532  22 124468999999999999999999999999  666543211111100000 001


Q ss_pred             Eeeccc-eeeeecCCC-cceeeeeeee-------eeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           80 CSVISF-TSILAGDAP-KYSSFYKVKR-------LHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        80 ~~v~~~-~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      ..+... .++++.-+. ++-++.-+.+       ....+++|    ++|-+|||+++|||+|+|.+++||++++.
T Consensus       173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            111111 122222222 2222221111       11134444    57999999999999999999999999876

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.75  E-value=1.8e-17  Score=123.64  Aligned_cols=141  Identities=16%  Similarity=0.226  Sum_probs=107.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      +.+|+.||+++|||+|+.+ .+++++  .++++++++|..+++.+.+|+.|+.|++  ||++.+...+++.||.....  
T Consensus       148 v~SgsdD~t~kl~D~R~k~-~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikv--Wd~r~~d~~~~lsGh~DtIt~l  222 (338)
T KOG0265|consen  148 VCSGSDDGTLKLWDIRKKE-AIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKV--WDLRKNDGLYTLSGHADTITGL  222 (338)
T ss_pred             EEecCCCceEEEEeecccc-hhhccc--cceeEEEEEecccccceeeccccCceee--eccccCcceEEeecccCceeeE
Confidence            4688999999999999865 345443  4578999999999999999999999999  89998899999999987421  


Q ss_pred             EEeeccceeeeecCCCcceeee-----eeeeeeeeeece--------EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           79 TCSVISFTSILAGDAPKYSSFY-----KVKRLHLFVKSH--------VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      ....+...+++=+.+..++++.     +-+|.+..+.||        +.|+|+|+++.+.+|+.|+.+++||...++.++
T Consensus       223 sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly  302 (338)
T KOG0265|consen  223 SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY  302 (338)
T ss_pred             EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEE
Confidence            1111111222335555444332     345666677665        369999999999999999999999999988876


Q ss_pred             c
Q 032092          146 V  146 (147)
Q Consensus       146 ~  146 (147)
                      .
T Consensus       303 k  303 (338)
T KOG0265|consen  303 K  303 (338)
T ss_pred             E
Confidence            4

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=9e-18  Score=136.70  Aligned_cols=145  Identities=15%  Similarity=0.180  Sum_probs=110.4

Q ss_pred             CeEeecCCeEEEEECCCCcc---ceeE----ecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092            1 MVVGTADRNLVVFNLQNPQT---EFKR----INSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH   73 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~---~~~~----~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h   73 (147)
                      ++++|.|+++++|++...+.   +...    ....|...|++++++|+.+.+|+||.|.+.+|  |+..+.+...++.||
T Consensus       427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi--W~le~~~l~~vLsGH  504 (775)
T KOG0319|consen  427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI--WDLEQLRLLGVLSGH  504 (775)
T ss_pred             EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee--ecccCceEEEEeeCC
Confidence            58899999999999987321   1110    11235567999999999999999999999999  555578889999999


Q ss_pred             cCCc--eEEeeccceeeeecCCCcceeeee-eeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           74 RDGS--ETCSVISFTSILAGDAPKYSSFYK-VKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        74 ~~~~--~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +...  ..|..++..+.++|+|-+++.|.- .-.+...+.||.    +++|-.+|+.|++|++||-++|||++++.|+.+
T Consensus       505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t  584 (775)
T KOG0319|consen  505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT  584 (775)
T ss_pred             ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh
Confidence            9753  234444443344566666666653 235567888884    689999999999999999999999999998875


Q ss_pred             C
Q 032092          147 F  147 (147)
Q Consensus       147 ~  147 (147)
                      +
T Consensus       585 l  585 (775)
T KOG0319|consen  585 L  585 (775)
T ss_pred             h
Confidence            3

>PTZ00421 coronin; Provisional

Probab=99.75  E-value=7.9e-17  Score=130.56  Aligned_cols=141  Identities=11%  Similarity=0.074  Sum_probs=99.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc---
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS---   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~---   77 (147)
                      |++|+.|++|+|||+++++. ...+. .+...|.+++|+|+|+.|++|+.||+|+|  ||+++++.+.++.+|....   
T Consensus       141 LaSgs~DgtVrIWDl~tg~~-~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrI--wD~rsg~~v~tl~~H~~~~~~~  216 (493)
T PTZ00421        141 LASAGADMVVNVWDVERGKA-VEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNI--IDPRDGTIVSSVEAHASAKSQR  216 (493)
T ss_pred             EEEEeCCCEEEEEECCCCeE-EEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEE--EECCCCcEEEEEecCCCCcceE
Confidence            57899999999999998853 34443 35567999999999999999999999999  8888888888888886531   


Q ss_pred             eEEeeccceeeeecC---CC-cceeee--eeeeeeeee-----eceEEEEEecCCCeEEEeC-CCCcEEEeecCCceeee
Q 032092           78 ETCSVISFTSILAGD---AP-KYSSFY--KVKRLHLFV-----KSHVIVLFVQIHHTFATAG-SDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~---~~-~~~~~~--~~~~~~~~~-----~~~~~~~fspdg~~latg~-~Dg~i~iWd~~~~~~~~  145 (147)
                      ..+....-.++++|.   .+ .+.+|.  .+.......     .+...+.|+|++++|++|+ .|+.|++||+.+++.++
T Consensus       217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~  296 (493)
T PTZ00421        217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF  296 (493)
T ss_pred             EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence            122223233444442   23 333333  222221111     2234568999999988887 59999999999887664

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.75  E-value=5.9e-17  Score=118.58  Aligned_cols=146  Identities=16%  Similarity=0.200  Sum_probs=106.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC----CcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ----QSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~----~~~~~~~~~h~~~   76 (147)
                      |++|..+|.|++||+++.... +.+......+|+++++.|||.+++.+...|++.+|++=...    -.++..|+.|..-
T Consensus       139 Lis~dqsg~irvWDl~~~~c~-~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~  217 (311)
T KOG0315|consen  139 LISGDQSGNIRVWDLGENSCT-HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH  217 (311)
T ss_pred             EEeecCCCcEEEEEccCCccc-cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce
Confidence            678999999999999986432 12222233579999999999999999999999995432211    2344556677654


Q ss_pred             ce--EEeeccceeeeecCCCcceeee--eeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           77 SE--TCSVISFTSILAGDAPKYSSFY--KVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        77 ~~--~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ..  .+++....+.+.|+|.++.+|.  ..-+..+.+.+|.    .|+||.||++|.||++|+.+++||+..++.+++|
T Consensus       218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy  296 (311)
T KOG0315|consen  218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY  296 (311)
T ss_pred             EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence            32  3444555556678888766655  2234456778885    4999999999999999999999999999987764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=9.7e-17  Score=118.40  Aligned_cols=139  Identities=11%  Similarity=0.087  Sum_probs=103.6

Q ss_pred             CeEeecCCeEEEEECCCCcc--ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc-
Q 032092            1 MVVGTADRNLVVFNLQNPQT--EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~--~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-   77 (147)
                      ||+|+.|+.||||+...+..  ....+...|+..|+++||+|.|++||+||-|.++.||.=...+.+.+.++.||.++. 
T Consensus        30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK  109 (312)
T KOG0645|consen   30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK  109 (312)
T ss_pred             EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee
Confidence            68999999999999996432  122334467778999999999999999999999999433333456678889998864 


Q ss_pred             -eEEeeccceeeeecCCCcceeeeee----eeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           78 -ETCSVISFTSILAGDAPKYSSFYKV----KRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        78 -~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                       .+++.+.-.+-+.++|.-++++...    .....++..|+    .+.|||..-+|+|+|+|.+|++|.-.
T Consensus       110 ~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  110 CVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeec
Confidence             3444444333334666656665532    24466788886    59999998999999999999999876

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.75  E-value=2.3e-17  Score=128.96  Aligned_cols=143  Identities=12%  Similarity=0.131  Sum_probs=104.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc---
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS---   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~---   77 (147)
                      +++++.||.|+++-+... .|++++.. |..+|.+|.|+|.|..|++++.|++++|  |...+......|.+|..+.   
T Consensus       332 F~ts~td~~i~V~kv~~~-~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~Tlki--Ws~~~~~~~~~l~~Hskei~t~  407 (524)
T KOG0273|consen  332 FATSSTDGCIHVCKVGED-RPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKI--WSMGQSNSVHDLQAHSKEIYTI  407 (524)
T ss_pred             EeecCCCceEEEEEecCC-Ccceeeec-ccCceEEEEECCCCceEEEecCCCeeEe--eecCCCcchhhhhhhccceeeE
Confidence            368899999999999875 47777765 6678999999999999999999999999  5544444444455555221   


Q ss_pred             --------eEEeeccceeeeecCCCcceeeeeeeee-eeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           78 --------ETCSVISFTSILAGDAPKYSSFYKVKRL-HLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        78 --------~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                              ...+-....+++++.|..++.+.-...+ ...|..|    .+++|+|+|+++|+|+.||.|+||+++++++.
T Consensus       408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~  487 (524)
T KOG0273|consen  408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV  487 (524)
T ss_pred             eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee
Confidence                    1111122334555777776666543333 2345555    47999999999999999999999999999998


Q ss_pred             ecC
Q 032092          145 KVF  147 (147)
Q Consensus       145 ~~~  147 (147)
                      ++|
T Consensus       488 ~s~  490 (524)
T KOG0273|consen  488 KSY  490 (524)
T ss_pred             Eee
Confidence            864

>PTZ00420 coronin; Provisional

Probab=99.74  E-value=2.6e-17  Score=134.78  Aligned_cols=107  Identities=9%  Similarity=0.118  Sum_probs=83.4

Q ss_pred             CeEeecCCeEEEEECCCCcc-------ceeEecCCCCcceEEEEEccCCCE-EEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092            1 MVVGTADRNLVVFNLQNPQT-------EFKRINSPLKYQMRCVAAFPDQQG-FWVGSIEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-------~~~~~~~~~~~~i~~la~spdg~~-l~~g~~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      ||+|+.||+|+|||+.++..       +...+ ..|...|.+++|+|++.. +++|+.||+|+|  ||+++++....+. 
T Consensus        90 LASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI--WDl~tg~~~~~i~-  165 (568)
T PTZ00420         90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNI--WDIENEKRAFQIN-  165 (568)
T ss_pred             EEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEE--EECCCCcEEEEEe-
Confidence            68999999999999986432       11122 245567999999999876 578999999999  7777776655554 


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      |..     .+.++                              +|+|+|++|++++.|+.|+|||.++++.+.+
T Consensus       166 ~~~-----~V~Sl------------------------------swspdG~lLat~s~D~~IrIwD~Rsg~~i~t  204 (568)
T PTZ00420        166 MPK-----KLSSL------------------------------KWNIKGNLLSGTCVGKHMHIIDPRKQEIASS  204 (568)
T ss_pred             cCC-----cEEEE------------------------------EECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            221     24555                              9999999999999999999999999887765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.74  E-value=2e-17  Score=133.05  Aligned_cols=109  Identities=18%  Similarity=0.269  Sum_probs=89.8

Q ss_pred             CeEeecCCeEEEEECCCCc-cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC-CCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQ-TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD-SQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~-~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~-~~~~~~~~~~~h~~~~~   78 (147)
                      |++++.|+.+++|+....+ .....+ ..|...|++++|+||++++++|+.|++++|  ||+ ..++.+.++++|..   
T Consensus       174 l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiri--wd~~~~~~~~~~l~gH~~---  247 (456)
T KOG0266|consen  174 LAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRI--WDLKDDGRNLKTLKGHST---  247 (456)
T ss_pred             EEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEE--eeccCCCeEEEEecCCCC---
Confidence            5778899999999996554 122222 345567999999999999999999999999  666 44578899999987   


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                        .++++                              +|+|+|+++++|+.|++|+|||+++++++..+
T Consensus       248 --~v~~~------------------------------~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l  284 (456)
T KOG0266|consen  248 --YVTSV------------------------------AFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL  284 (456)
T ss_pred             --ceEEE------------------------------EecCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence              36666                              99999999999999999999999998887653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=2.9e-17  Score=132.23  Aligned_cols=143  Identities=16%  Similarity=0.227  Sum_probs=107.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      ++++|+|-+|++||....=...++++ +|..-|.+|+|+|. .+.||+++.|++|++  |...+..+.+++++|.....+
T Consensus       112 vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrTVKV--Wslgs~~~nfTl~gHekGVN~  188 (794)
T KOG0276|consen  112 VLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRTVKV--WSLGSPHPNFTLEGHEKGVNC  188 (794)
T ss_pred             EEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeeccccEEE--EEcCCCCCceeeeccccCcce
Confidence            46889999999999998633334454 56667999999994 789999999999999  666667888999999865321


Q ss_pred             ---EeeccceeeeecCCC-cceeee-eeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           80 ---CSVISFTSILAGDAP-KYSSFY-KVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ---~~v~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                         ++-..-..+++|+|| .+.+|. +.+.+...+.||.    .+.|||.-..++|||.||++|||+..+-++.++
T Consensus       189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t  264 (794)
T KOG0276|consen  189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT  264 (794)
T ss_pred             EEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence               222222234555555 555544 6677778888884    489999999999999999999999988765543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.73  E-value=4e-17  Score=129.09  Aligned_cols=108  Identities=19%  Similarity=0.348  Sum_probs=88.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE---eccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK---CHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~---~h~~~~   77 (147)
                      +++|++|++|.+|+=.-++  |+.....|..-|+|+.|+|||+.||+.+.||+|.|  +|-.+++.+..+.   +|+.  
T Consensus       163 i~T~sdDn~v~ffeGPPFK--Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i--yDGktge~vg~l~~~~aHkG--  236 (603)
T KOG0318|consen  163 IATGSDDNTVAFFEGPPFK--FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI--YDGKTGEKVGELEDSDAHKG--  236 (603)
T ss_pred             EEeccCCCeEEEeeCCCee--eeecccccccceeeEEECCCCCeEEEecCCccEEE--EcCCCccEEEEecCCCCccc--
Confidence            5899999999999754332  22211223334999999999999999999999999  9999999998887   4543  


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                         .+.++                              +|+||++.|+|++.|.+++|||+.+++++++|
T Consensus       237 ---sIfal------------------------------sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  237 ---SIFAL------------------------------SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW  273 (603)
T ss_pred             ---cEEEE------------------------------EECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence               46666                              99999999999999999999999999998875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=6.6e-17  Score=118.56  Aligned_cols=138  Identities=17%  Similarity=0.225  Sum_probs=102.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--   77 (147)
                      +++|+.||+++|||+.....|++.+. .|+.+|.++.+++. .+.++++|.||+|+|  ||...++.+.+|++|....  
T Consensus        76 ~~~a~GDGSLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKL--W~~~r~~Sv~Tf~gh~~~Iy~  152 (311)
T KOG0277|consen   76 VIAASGDGSLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKL--WDPNRPNSVQTFNGHNSCIYQ  152 (311)
T ss_pred             EEEEecCceEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEe--ecCCCCcceEeecCCccEEEE
Confidence            47899999999999887777766554 36678999999995 677899999999999  7777788999999997632  


Q ss_pred             eEEeeccceeeee-cCCCcceeeee-eeeeeeeeece----EEEEEec-CCCeEEEeCCCCcEEEeecCCc
Q 032092           78 ETCSVISFTSILA-GDAPKYSSFYK-VKRLHLFVKSH----VIVLFVQ-IHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        78 ~~~~v~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~----~~~~fsp-dg~~latg~~Dg~i~iWd~~~~  141 (147)
                      ..+.+..-.++++ ++|...+.+.. .......+.+|    +.|.|+. +.++|+||+.|+.|++||++.-
T Consensus       153 a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  153 AAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             EecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence            2233333334544 66665554441 11223346666    4689998 5589999999999999999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=5.6e-17  Score=130.54  Aligned_cols=143  Identities=14%  Similarity=0.200  Sum_probs=112.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      +++|++|..||+|+..++++ ++.++ +|..-|++|+.+|...+++++|+|=+|++|+|+.. ....++|.||....+  
T Consensus        70 iv~GsDD~~IrVfnynt~ek-V~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv  146 (794)
T KOG0276|consen   70 IVTGSDDMQIRVFNYNTGEK-VKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQV  146 (794)
T ss_pred             EEEecCCceEEEEeccccee-eEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEE
Confidence            57999999999999999976 56665 45556999999999999999999999999999864 466789999987644  


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeee--eeeeece----EEEEEecCC--CeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRL--HLFVKSH----VIVLFVQIH--HTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~fspdg--~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ++.+..-..+++++-|.....|.+.+.  +..+.||    +.+.|-|-|  .+|+||+.|-+|+|||.+++.|+.|
T Consensus       147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T  222 (794)
T KOG0276|consen  147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT  222 (794)
T ss_pred             EecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH
Confidence            333334445777777754444444433  4456666    568888755  7999999999999999999998865

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.72  E-value=8.5e-18  Score=129.52  Aligned_cols=107  Identities=17%  Similarity=0.261  Sum_probs=92.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++||+||+|+|||.+.++.+ ..+ .+|...|+|++|+|....+++|+.|..|++  ||++++..+.++.+|++     
T Consensus       195 F~t~SdDg~ikiWdf~~~kee-~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKl--WDprSg~cl~tlh~HKn-----  265 (464)
T KOG0284|consen  195 FLTCSDDGTIKIWDFRMPKEE-RVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKL--WDPRSGSCLATLHGHKN-----  265 (464)
T ss_pred             eEEecCCCeEEEEeccCCchh-hee-ccCCCCcceeccCCccceeEEccCCceeEe--ecCCCcchhhhhhhccc-----
Confidence            478999999999999998643 223 467778999999999999999999999999  99999999999998987     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .|..+                              .|+|++++|+|+|.|..++++|+++.+.+++
T Consensus       266 tVl~~------------------------------~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~  301 (464)
T KOG0284|consen  266 TVLAV------------------------------KFNPNGNWLLTGSKDQSCKVFDIRTMKELFT  301 (464)
T ss_pred             eEEEE------------------------------EEcCCCCeeEEccCCceEEEEehhHhHHHHH
Confidence            35555                              9999999999999999999999986655544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.72  E-value=1.9e-16  Score=129.62  Aligned_cols=136  Identities=18%  Similarity=0.191  Sum_probs=101.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc-eE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-ET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-~~   79 (147)
                      ||||++||+|+|||.+++-+ +.++. .|...|+.+.|+..|+.+++.+.||+|+.  ||....+.-.+|++..... .+
T Consensus       365 iaTG~eDgKVKvWn~~SgfC-~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRA--wDlkRYrNfRTft~P~p~Qfsc  440 (893)
T KOG0291|consen  365 IATGAEDGKVKVWNTQSGFC-FVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRA--WDLKRYRNFRTFTSPEPIQFSC  440 (893)
T ss_pred             EEeccCCCcEEEEeccCceE-EEEec-cCCCceEEEEEEecCCEEEEeecCCeEEe--eeecccceeeeecCCCceeeeE
Confidence            68999999999999999864 44554 35567999999999999999999999999  6666666667777644322 33


Q ss_pred             Eeecc-ceeeeecCCCcce-eeeeee--eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           80 CSVIS-FTSILAGDAPKYS-SFYKVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        80 ~~v~~-~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .+++. -.++.+|..+.+. ..|.++  +..-.+.||    .+++|+|+|..|||||-|.+||+||+-+
T Consensus       441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS  509 (893)
T ss_pred             EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence            44442 2345566666433 344444  445578888    4689999999999999999999999744

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.72  E-value=9.1e-17  Score=118.15  Aligned_cols=141  Identities=15%  Similarity=0.153  Sum_probs=98.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe--ccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC--HRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~--h~~~~~   78 (147)
                      +++++.|.+|++||+++++ +...+..  +..-.-+.|+|+|+++++|+.|..|..  +|.++.+...+++-  ..++ .
T Consensus        80 ~atas~dk~ir~wd~r~~k-~~~~i~~--~~eni~i~wsp~g~~~~~~~kdD~it~--id~r~~~~~~~~~~~~e~ne-~  153 (313)
T KOG1407|consen   80 FATASGDKTIRIWDIRSGK-CTARIET--KGENINITWSPDGEYIAVGNKDDRITF--IDARTYKIVNEEQFKFEVNE-I  153 (313)
T ss_pred             eEEecCCceEEEEEeccCc-EEEEeec--cCcceEEEEcCCCCEEEEecCcccEEE--EEecccceeehhcccceeee-e
Confidence            5889999999999999986 4555543  233456899999999999999999998  89887655443321  1111 1


Q ss_pred             EEeeccceeeeecCCCcceeee-eeeeeeeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           79 TCSVISFTSILAGDAPKYSSFY-KVKRLHLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+.-.....++..+...+.++. +.-+.+..+++|.+    +.|+|+|++||+|++|..+-+||+++.-|++.|
T Consensus       154 ~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i  227 (313)
T KOG1407|consen  154 SWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI  227 (313)
T ss_pred             eecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence            2221122244555555555433 32234567788854    799999999999999999999999987776654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.72  E-value=1.8e-16  Score=120.73  Aligned_cols=141  Identities=16%  Similarity=0.219  Sum_probs=107.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~   78 (147)
                      ++||+.|..-.||++.+++.+.. + ..|+..|.++.||.||.+||+|+.+|.|+|  |+..++....++...-..-  .
T Consensus        79 ~aTGGgDD~AflW~~~~ge~~~e-l-tgHKDSVt~~~FshdgtlLATGdmsG~v~v--~~~stg~~~~~~~~e~~dieWl  154 (399)
T KOG0296|consen   79 VATGGGDDLAFLWDISTGEFAGE-L-TGHKDSVTCCSFSHDGTLLATGDMSGKVLV--FKVSTGGEQWKLDQEVEDIEWL  154 (399)
T ss_pred             EEecCCCceEEEEEccCCcceeE-e-cCCCCceEEEEEccCceEEEecCCCccEEE--EEcccCceEEEeecccCceEEE
Confidence            47999999999999999975433 3 357889999999999999999999999999  7777776666653111110  1


Q ss_pred             EEeeccceeeeecCCCcceeeeee-e-eeeeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKV-K-RLHLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+-+.. .++++|++|+....|++ + .....+.||++    =.|.|||+.+++|..||+|++||.++++.++.
T Consensus       155 ~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~  227 (399)
T KOG0296|consen  155 KWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHK  227 (399)
T ss_pred             Eecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEE
Confidence            222322 35677888865444433 3 55778999964    38999999999999999999999999988764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.70  E-value=6.6e-17  Score=117.64  Aligned_cols=106  Identities=15%  Similarity=0.256  Sum_probs=88.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.||++|.||+|.++. ..   .-...||+|++|+||+++.++|+.|+++++  +|..+|+.+..+++|++.  .+
T Consensus       158 IvaGS~DGtvRtydiR~G~l-~s---Dy~g~pit~vs~s~d~nc~La~~l~stlrL--lDk~tGklL~sYkGhkn~--ey  229 (307)
T KOG0316|consen  158 IVAGSVDGTVRTYDIRKGTL-SS---DYFGHPITSVSFSKDGNCSLASSLDSTLRL--LDKETGKLLKSYKGHKNM--EY  229 (307)
T ss_pred             EEeeccCCcEEEEEeeccee-eh---hhcCCcceeEEecCCCCEEEEeeccceeee--cccchhHHHHHhcccccc--ee
Confidence            57899999999999999953 11   112358999999999999999999999999  999999999999999874  23


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .+.                               +.++.....+++|+.||.|++||+.+...+.
T Consensus       230 kld-------------------------------c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s  263 (307)
T KOG0316|consen  230 KLD-------------------------------CCLNQSDTHVFSGSEDGKVYFWDLVDETQIS  263 (307)
T ss_pred             eee-------------------------------eeecccceeEEeccCCceEEEEEeccceeee
Confidence            332                               2677777899999999999999998876654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.70  E-value=7e-17  Score=130.24  Aligned_cols=110  Identities=19%  Similarity=0.297  Sum_probs=93.3

Q ss_pred             CeEeecCCeEEEEECCCCcc-ce--------eEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EF--------KRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~--------~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      +|+|+-|+.|.|||+.++.. ++        ....++++.+|.++|.+|.|..|++|+.++.+++  ||.++.+.+..++
T Consensus       133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~--wDprt~~kimkLr  210 (735)
T KOG0308|consen  133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL--WDPRTCKKIMKLR  210 (735)
T ss_pred             EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE--eccccccceeeee
Confidence            47899999999999997732 11        1122245567999999999999999999999999  9999999999999


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ||+..     |..+                              ..++||+.++|||+||+|++||+...+|+.||
T Consensus       211 GHTdN-----Vr~l------------------------------l~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  211 GHTDN-----VRVL------------------------------LVNDDGTRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             ccccc-----eEEE------------------------------EEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence            99974     4444                              77899999999999999999999999999876

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.70  E-value=4e-17  Score=120.41  Aligned_cols=135  Identities=16%  Similarity=0.245  Sum_probs=95.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC--ce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG--SE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~--~~   78 (147)
                      |++|.+||.|.+||++++++.+.... .|...|+.|+++||..+|++|+.|.+.++  ||.++-..+.+|...+.-  ..
T Consensus       162 ii~Ghe~G~is~~da~~g~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl--~D~~tl~v~Kty~te~PvN~aa  238 (327)
T KOG0643|consen  162 IIAGHEDGSISIYDARTGKELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKL--VDVRTLEVLKTYTTERPVNTAA  238 (327)
T ss_pred             EEEecCCCcEEEEEcccCceeeechh-hhccccccccccCCcceEEecccCcccee--eeccceeeEEEeeeccccccee
Confidence            57899999999999999876544332 34557999999999999999999999999  777777777788764421  11


Q ss_pred             EEeeccceeeeecCCCccee-------------ee------eeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           79 TCSVISFTSILAGDAPKYSS-------------FY------KVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~-------------~~------~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      ..|+.. -.|++|+.+...+             |+      ++-|+.-+|-.+++++|||||+..++||.||.|++--.+
T Consensus       239 isP~~d-~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  239 ISPLLD-HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             cccccc-eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            111111 2356666553221             11      122444455555789999999999999999999987543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.70  E-value=1.5e-16  Score=121.73  Aligned_cols=102  Identities=15%  Similarity=0.259  Sum_probs=83.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC---CcceeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ---QSKNFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~---~~~~~~~~~h~~~~   77 (147)
                      +|+||.||+|+|||+|.+.+.-......|...|+.|.|+.+-.+||+|+.||+++|  ||+|+   ++++.+|+-|+.  
T Consensus       273 faScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~i--wDLR~~~~~~pVA~fk~Hk~--  348 (440)
T KOG0302|consen  273 FASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSI--WDLRQFKSGQPVATFKYHKA--  348 (440)
T ss_pred             EEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEE--EEhhhccCCCcceeEEeccC--
Confidence            58999999999999999743212222356667999999998779999999999999  77775   556778888876  


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecC
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~  139 (147)
                         +++++                              .|+|.. ..||++|.|..|.|||+.
T Consensus       349 ---pItsi------------------------------eW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  349 ---PITSI------------------------------EWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             ---CeeEE------------------------------EeccccCceEEeccCCCcEEEEEee
Confidence               67777                              999954 889999999999999985

>PTZ00420 coronin; Provisional

Probab=99.69  E-value=4.7e-16  Score=127.47  Aligned_cols=110  Identities=14%  Similarity=0.180  Sum_probs=84.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.|++|+|||+++++.. ..+.  +...|.+++|+|+|+.|++++.|++|+|  ||+++++.+.++.+|.......
T Consensus       141 LaSgS~DgtIrIWDl~tg~~~-~~i~--~~~~V~SlswspdG~lLat~s~D~~IrI--wD~Rsg~~i~tl~gH~g~~~s~  215 (568)
T PTZ00420        141 MCSSGFDSFVNIWDIENEKRA-FQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHI--IDPRKQEIASSFHIHDGGKNTK  215 (568)
T ss_pred             EEEEeCCCeEEEEECCCCcEE-EEEe--cCCcEEEEEECCCCCEEEEEecCCEEEE--EECCCCcEEEEEecccCCceeE
Confidence            368899999999999998643 3333  2346999999999999999999999999  8888888888898887531111


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC----cEEEeecCC-ceeee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG----AFNFWDKDS-KQRLK  145 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg----~i~iWd~~~-~~~~~  145 (147)
                      .+...                              .|+|++++|+|+|.|+    .|+|||+++ .+.++
T Consensus       216 ~v~~~------------------------------~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~  255 (568)
T PTZ00420        216 NIWID------------------------------GLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV  255 (568)
T ss_pred             EEEee------------------------------eEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE
Confidence            11111                              6789999999988775    799999985 44443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.69  E-value=9.7e-17  Score=125.66  Aligned_cols=140  Identities=22%  Similarity=0.264  Sum_probs=97.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--   77 (147)
                      +.+++-|+.|++||+.+|++. .++..  ...+.|+.|.||+ +.|++|+.|+.|+.  ||+|+++.++++..|-...  
T Consensus       273 fLS~sfD~~lKlwDtETG~~~-~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~--wDiRs~kvvqeYd~hLg~i~~  347 (503)
T KOG0282|consen  273 FLSASFDRFLKLWDTETGQVL-SRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQ--WDIRSGKVVQEYDRHLGAILD  347 (503)
T ss_pred             eeeeecceeeeeeccccceEE-EEEec--CCCceeeecCCCCCcEEEEecCCCcEEE--EeccchHHHHHHHhhhhheee
Confidence            468999999999999999753 34432  3468999999997 89999999999999  8889888877776554321  


Q ss_pred             eEEeeccceeeeecCCCcceeeeee-----e----------------------------------------eee--eeee
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKV-----K----------------------------------------RLH--LFVK  110 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~-----~----------------------------------------~~~--~~~~  110 (147)
                      ..+-...-..|++++|..+++|..-     +                                        +.+  ..+.
T Consensus       348 i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe  427 (503)
T KOG0282|consen  348 ITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE  427 (503)
T ss_pred             eEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc
Confidence            1222222233444555544432210     0                                        000  0145


Q ss_pred             ceE------EEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092          111 SHV------IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus       111 ~~~------~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      ||.      .|.|||||.+|++|++||.+.+||.++-+++.
T Consensus       428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~  468 (503)
T KOG0282|consen  428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS  468 (503)
T ss_pred             ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh
Confidence            563      49999999999999999999999998876654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.69  E-value=7.7e-16  Score=120.52  Aligned_cols=138  Identities=11%  Similarity=0.117  Sum_probs=101.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      ||+|+.||.++||+.....  ..++ ..|+.||.+|.|+-+|++|++++.||++.|  ||.-+++....|.-|...+.  
T Consensus       250 LatG~~~G~~riw~~~G~l--~~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttil--wd~~~g~~~q~f~~~s~~~lDV  324 (524)
T KOG0273|consen  250 LATGSEDGEARIWNKDGNL--ISTL-GQHKGPIFSLKWNKKGTYILSGGVDGTTIL--WDAHTGTVKQQFEFHSAPALDV  324 (524)
T ss_pred             EEEeecCcEEEEEecCchh--hhhh-hccCCceEEEEEcCCCCEEEeccCCccEEE--EeccCceEEEeeeeccCCccce
Confidence            6899999999999998753  2233 357889999999999999999999999999  88877777666666654321  


Q ss_pred             EEeeccceeeeecCCCcceeee-eeeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           79 TCSVISFTSILAGDAPKYSSFY-KVKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      .+. +.....+++.|.-+.+++ ..+++...+.||    +.+.|+|.|.+|+||+.|++++||+.....+.
T Consensus       325 dW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~  394 (524)
T KOG0273|consen  325 DWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV  394 (524)
T ss_pred             EEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence            221 222233344444455555 334666677777    45899999999999999999999997655443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=1.3e-16  Score=130.68  Aligned_cols=138  Identities=14%  Similarity=0.182  Sum_probs=104.3

Q ss_pred             CeEeecCCeEEEEECCCC--ccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNP--QTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~--~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~   77 (147)
                      |||++..|.|.+||+...  ++....+. .|+-.+.++.|++- ..+|++|+.||+|++  ||.|..+...++.+.....
T Consensus       103 IAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~--~DlR~~~S~~t~~~nSESi  179 (839)
T KOG0269|consen  103 IATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKC--WDLRSKKSKSTFRSNSESI  179 (839)
T ss_pred             heeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEE--Eeeecccccccccccchhh
Confidence            689999999999999883  22222232 35567999999996 678999999999999  7778777777787643321


Q ss_pred             --eEEeeccceeeeecCCCcceeeeeee---eeeeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           78 --ETCSVISFTSILAGDAPKYSSFYKVK---RLHLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        78 --~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                        ..+.+..-..++++.|.++.-.|++.   +....+.+|++    |.|||++.+|||||.|+.|+|||..+.
T Consensus       180 RDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  180 RDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             hceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence              34455555667888888776666554   44556677753    799999999999999999999998754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=1.5e-15  Score=115.86  Aligned_cols=142  Identities=15%  Similarity=0.112  Sum_probs=104.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET-   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~-   79 (147)
                      |++++.|.+|+.||+.++-. ++++.. +...|+.++.+.||..+|+++.|.++++|-...  +.-...++.|.....+ 
T Consensus       208 ilS~srD~tik~We~~tg~c-v~t~~~-h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t--~~~k~~lR~hEh~vEci  283 (406)
T KOG0295|consen  208 ILSCSRDNTIKAWECDTGYC-VKTFPG-HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT--KQCKAELREHEHPVECI  283 (406)
T ss_pred             eeecccccceeEEeccccee-EEeccC-chHhEEEEEecCCeeEEEecCCCceEEEEEecc--chhhhhhhccccceEEE
Confidence            57899999999999999864 566653 445799999999999999999999999955544  3333344445432111 


Q ss_pred             -E--------------eeccceeeeecCCCcceeeeee--eeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeec
Q 032092           80 -C--------------SVISFTSILAGDAPKYSSFYKV--KRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        80 -~--------------~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                       +              .-+....+.+++.|....+++.  -.....+.||-    .++|+|-|++|+++..|+++++||+
T Consensus       284 ~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  284 AWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL  363 (406)
T ss_pred             EecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence             0              0112224555666655444543  45677788883    5999999999999999999999999


Q ss_pred             CCceeeec
Q 032092          139 DSKQRLKV  146 (147)
Q Consensus       139 ~~~~~~~~  146 (147)
                      +.++++++
T Consensus       364 ~~~~cmk~  371 (406)
T KOG0295|consen  364 KNLQCMKT  371 (406)
T ss_pred             ccceeeec
Confidence            99999886

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.68  E-value=1.2e-16  Score=126.28  Aligned_cols=111  Identities=18%  Similarity=0.335  Sum_probs=80.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec----CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC--cceeEE-Eec
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN----SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ--SKNFTF-KCH   73 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~----~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~--~~~~~~-~~h   73 (147)
                      ++|++.||++||||+.+.+...+.+.    .+.+.++.+.+|+|||+.||+|..||.|.+  |+.+..  ++.+.. ..|
T Consensus       284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~--W~~~~~~v~p~~~vk~AH  361 (641)
T KOG0772|consen  284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI--WDKGSRTVRPVMKVKDAH  361 (641)
T ss_pred             eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceee--eecCCcccccceEeeecc
Confidence            47899999999999988653222221    233457899999999999999999999999  554421  222222 345


Q ss_pred             cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC-ceeeec
Q 032092           74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS-KQRLKV  146 (147)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~-~~~~~~  146 (147)
                      ....   .+.++                              +||+||++|+|-|.|+++++||++. +++|++
T Consensus       362 ~~g~---~Itsi------------------------------~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~  402 (641)
T KOG0772|consen  362 LPGQ---DITSI------------------------------SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV  402 (641)
T ss_pred             CCCC---ceeEE------------------------------EeccccchhhhccCCCceeeeeccccccchhh
Confidence            4321   24444                              9999999999999999999999986 455554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.2e-15  Score=114.19  Aligned_cols=111  Identities=12%  Similarity=0.232  Sum_probs=86.4

Q ss_pred             eEeecCCeEEEEECCCC-ccceeEecCC--CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            2 VVGTADRNLVVFNLQNP-QTEFKRINSP--LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~-~~~~~~~~~~--~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |+|...+.|+|||+|.. +-|+.++.-.  ...+.+.|.|||||++++.++..+.+.+  +|..+|..+.+|.++.+...
T Consensus       156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~--lDAf~G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYL--LDAFDGTVKSTFSGYPNAGN  233 (311)
T ss_pred             EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEE--EEccCCcEeeeEeeccCCCC
Confidence            45555557888888775 3365554322  2345889999999999999999999999  99999999999988876421


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                       .+ -                              ++.|+||++++.+|+.||+|++|++++++.+..
T Consensus       234 -~~-~------------------------------~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~  269 (311)
T KOG1446|consen  234 -LP-L------------------------------SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV  269 (311)
T ss_pred             -cc-e------------------------------eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence             11 1                              239999999999999999999999999887654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.67  E-value=5.7e-17  Score=126.96  Aligned_cols=108  Identities=16%  Similarity=0.215  Sum_probs=91.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.|++|+|||+......+.++. +|..+|++++|+++|..|++++-|+.+++  ||+.+|+.+..|..  ..    
T Consensus       230 lLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl--wDtETG~~~~~f~~--~~----  300 (503)
T KOG0282|consen  230 LLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKL--WDTETGQVLSRFHL--DK----  300 (503)
T ss_pred             EEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeee--eccccceEEEEEec--CC----
Confidence            57899999999999998444455554 56678999999999999999999999999  89999998887753  21    


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .++.+                              .|+||+ +.|++|++|+.|+.||+++++.+++|
T Consensus       301 ~~~cv------------------------------kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY  338 (503)
T KOG0282|consen  301 VPTCV------------------------------KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY  338 (503)
T ss_pred             Cceee------------------------------ecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence            35555                              999998 99999999999999999999987764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.67  E-value=3.1e-15  Score=127.42  Aligned_cols=136  Identities=14%  Similarity=0.098  Sum_probs=96.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEc-cCCCEEEEEeeCCeEEEEeecCCCCc-ceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAF-PDQQGFWVGSIEGRVGVHHLDDSQQS-KNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~s-pdg~~l~~g~~dg~i~i~~~d~~~~~-~~~~~~~h~~~~~   78 (147)
                      |++|+.||+|++||+++++. ...+..  ...+.+++|+ |+|..|++|+.||.|++  ||.++.+ ...++.+|.....
T Consensus       591 L~Sgs~Dg~v~iWd~~~~~~-~~~~~~--~~~v~~v~~~~~~g~~latgs~dg~I~i--wD~~~~~~~~~~~~~h~~~V~  665 (793)
T PLN00181        591 LASGSDDGSVKLWSINQGVS-IGTIKT--KANICCVQFPSESGRSLAFGSADHKVYY--YDLRNPKLPLCTMIGHSKTVS  665 (793)
T ss_pred             EEEEcCCCEEEEEECCCCcE-EEEEec--CCCeEEEEEeCCCCCEEEEEeCCCeEEE--EECCCCCccceEecCCCCCEE
Confidence            58999999999999998753 344432  2468999995 56999999999999999  6776544 4567778876432


Q ss_pred             --EEeeccceeeeecCCCcceeeeee-------eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           79 --TCSVISFTSILAGDAPKYSSFYKV-------KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        79 --~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                        .+. ..-.++++|.|..+++|...       ......+.+|    ..++|+|++++||+|+.|+.|++|+.....
T Consensus       666 ~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        666 YVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             EEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence              222 33334555555555554421       1234456666    358999999999999999999999976543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.67  E-value=3.8e-15  Score=126.87  Aligned_cols=135  Identities=17%  Similarity=0.189  Sum_probs=93.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-ce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~   78 (147)
                      ||+|+.||+|+|||+.+++. +..+. .|...|.+++|+| ++.+|++|+.||+|++  ||.+++....++..+..- ..
T Consensus       548 las~~~Dg~v~lWd~~~~~~-~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i--Wd~~~~~~~~~~~~~~~v~~v  623 (793)
T PLN00181        548 VASSNFEGVVQVWDVARSQL-VTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKL--WSINQGVSIGTIKTKANICCV  623 (793)
T ss_pred             EEEEeCCCeEEEEECCCCeE-EEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEE--EECCCCcEEEEEecCCCeEEE
Confidence            57899999999999998753 34443 4666899999997 7899999999999999  677777777777654321 11


Q ss_pred             EEeeccceeeeecCCCcceeeeeeee---eeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKR---LHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .+....-..+++|+.++....|++..   ....+.+|    ..+.|. ++.+|+||+.|++|+|||+..
T Consensus       624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence            12112223455555554444443321   23345555    468886 678999999999999999874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.67  E-value=5.6e-16  Score=120.34  Aligned_cols=102  Identities=21%  Similarity=0.293  Sum_probs=81.0

Q ss_pred             CeEeecCCeEEEEECCCC-ccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC-CcceeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNP-QTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~-~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~~   77 (147)
                      ++++++|+.+.|||+|+. .++.+ ....|..++.|++|+|- +..||+|+.|++|+|  ||+|+ .+++.++.+|..+ 
T Consensus       243 F~sv~dd~~L~iwD~R~~~~~~~~-~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~L--wDlRnL~~~lh~~e~H~de-  318 (422)
T KOG0264|consen  243 FGSVGDDGKLMIWDTRSNTSKPSH-SVKAHSAEVNCVAFNPFNEFILATGSADKTVAL--WDLRNLNKPLHTFEGHEDE-  318 (422)
T ss_pred             heeecCCCeEEEEEcCCCCCCCcc-cccccCCceeEEEeCCCCCceEEeccCCCcEEE--eechhcccCceeccCCCcc-
Confidence            468899999999999963 23322 22356678999999995 567899999999999  88876 4567788888763 


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~  140 (147)
                          +..+                              .|+|.. ..||++|.|+.+.+||+..
T Consensus       319 ----v~~V------------------------------~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  319 ----VFQV------------------------------EWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             ----eEEE------------------------------EeCCCCCceeEecccCCcEEEEeccc
Confidence                4444                              999976 8999999999999999853

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.65  E-value=1.8e-15  Score=111.03  Aligned_cols=135  Identities=14%  Similarity=0.228  Sum_probs=90.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC-CceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD-GSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~-~~~~   79 (147)
                      +++.++|++||+||.+++. .++++..  +.+|+++.+++||+++.++.. +.|..  ||+.+...+..++...+ ....
T Consensus       158 iLSSadd~tVRLWD~rTgt-~v~sL~~--~s~VtSlEvs~dG~ilTia~g-ssV~F--wdaksf~~lKs~k~P~nV~SAS  231 (334)
T KOG0278|consen  158 ILSSADDKTVRLWDHRTGT-EVQSLEF--NSPVTSLEVSQDGRILTIAYG-SSVKF--WDAKSFGLLKSYKMPCNVESAS  231 (334)
T ss_pred             EEeeccCCceEEEEeccCc-EEEEEec--CCCCcceeeccCCCEEEEecC-ceeEE--eccccccceeeccCcccccccc
Confidence            3567899999999999996 4666653  357999999999998877554 56766  88877666655543222 1111


Q ss_pred             EeeccceeeeecCCCcc-eee-eee-eeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           80 CSVISFTSILAGDAPKY-SSF-YKV-KRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      +.+.. -.+..|.++.. ..| ++. +..-.+++||.    .+.|+|||...|+|+.||+|+||.+.-++
T Consensus       232 L~P~k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  232 LHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccCCC-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            22333 34556666642 222 221 12222356764    58999999999999999999999876543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.65  E-value=1.9e-14  Score=104.73  Aligned_cols=142  Identities=15%  Similarity=0.184  Sum_probs=98.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.||.|++||+.+++. ..... .+..++..+.|+|+++.+++++.||.|++  ||..+++....+..|.......
T Consensus        24 l~~~~~~g~i~i~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i--~~~~~~~~~~~~~~~~~~i~~~   99 (289)
T cd00200          24 LATGSGDGTIKVWDLETGEL-LRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRL--WDLETGECVRTLTGHTSYVSSV   99 (289)
T ss_pred             EEEeecCcEEEEEEeeCCCc-EEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEE--EEcCcccceEEEeccCCcEEEE
Confidence            57888899999999998753 23332 34456889999999999999999999999  6666666777777776433222


Q ss_pred             eecc-ceeeeecC-CCcceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVIS-FTSILAGD-APKYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~-~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .... -.++++++ +..+..+... .+....+..|    ..++|+|+++++++++.|+.|++||+++++.+..
T Consensus       100 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~  172 (289)
T cd00200         100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT  172 (289)
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee
Confidence            2222 12445555 4444443321 2223333333    5689999999999998899999999987776554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.65  E-value=1.1e-16  Score=123.42  Aligned_cols=107  Identities=19%  Similarity=0.239  Sum_probs=89.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|..+|.|+.|+.....  ++.+..++..+|+++||||+...|++++.||+|+|  ||.+..+....+.+|.     +
T Consensus       153 miSgD~gG~iKyWqpnmnn--Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~iki--Wdf~~~kee~vL~GHg-----w  223 (464)
T KOG0284|consen  153 MISGDKGGMIKYWQPNMNN--VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKI--WDFRMPKEERVLRGHG-----W  223 (464)
T ss_pred             EEEcCCCceEEecccchhh--hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEE--EeccCCchhheeccCC-----C
Confidence            5789999999999998753  34444445568999999999999999999999999  6666566666677775     3


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .|.++                              +|||.-.++|+||-|..|++||.+++++|-+
T Consensus       224 dVksv------------------------------dWHP~kgLiasgskDnlVKlWDprSg~cl~t  259 (464)
T KOG0284|consen  224 DVKSV------------------------------DWHPTKGLIASGSKDNLVKLWDPRSGSCLAT  259 (464)
T ss_pred             Cccee------------------------------ccCCccceeEEccCCceeEeecCCCcchhhh
Confidence            56676                              9999999999999999999999999998754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.65  E-value=2.2e-14  Score=104.39  Aligned_cols=142  Identities=16%  Similarity=0.209  Sum_probs=98.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++++.||.|++||+.+++. ...+. .+..++.+++|+|+++.+++++.||.+.+  ||.++++....+..|.......
T Consensus        66 l~~~~~~~~i~i~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~i~~~  141 (289)
T cd00200          66 LASGSSDKTIRLWDLETGEC-VRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKV--WDVETGKCLTTLRGHTDWVNSV  141 (289)
T ss_pred             EEEEcCCCeEEEEEcCcccc-eEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEE--EECCCcEEEEEeccCCCcEEEE
Confidence            57888899999999998643 33333 34457999999999888888888999999  7776677777777776433222


Q ss_pred             eecc-ceeeeecCCC-cceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVIS-FTSILAGDAP-KYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~-~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .... -.+++++..+ .+..+..- .+....+..|    ..++|+|+++.+++++.|+.|++||+++++.+.+
T Consensus       142 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~  214 (289)
T cd00200         142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT  214 (289)
T ss_pred             EEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence            2222 2345555534 44433311 2223334344    4689999999999999999999999988777654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=3.1e-15  Score=108.94  Aligned_cols=143  Identities=15%  Similarity=0.204  Sum_probs=103.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++|+.|+.|++||+.++++. .++. .|..+|+.++|+.+...+++|+.|.++++||-..++.++++.+..-+.....-
T Consensus        74 f~s~GgDk~v~vwDV~TGkv~-Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si  151 (307)
T KOG0316|consen   74 FASCGGDKAVQVWDVNTGKVD-RRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI  151 (307)
T ss_pred             cccCCCCceEEEEEcccCeee-eecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence            578999999999999999753 4443 46678999999999999999999999999544444556666665444332222


Q ss_pred             eeccceeeeecCCC-cceeeeeeeeeee--ee--eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFTSILAGDAP-KYSSFYKVKRLHL--FV--KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~~~~~~~~~-~~~~~~~~~~~~~--~~--~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .++. -.|++|+-| +++.+. +....+  -.  ...++++|+||++..+.++.|+++++-|-++|++++.|
T Consensus       152 ~v~~-heIvaGS~DGtvRtyd-iR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY  221 (307)
T KOG0316|consen  152 DVAE-HEIVAGSVDGTVRTYD-IRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY  221 (307)
T ss_pred             Eecc-cEEEeeccCCcEEEEE-eecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh
Confidence            2333 235666666 455544 322222  11  33478999999999999999999999999999998765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.63  E-value=9.3e-16  Score=119.12  Aligned_cols=110  Identities=21%  Similarity=0.326  Sum_probs=84.3

Q ss_pred             CeEeecCCeEEEEECCCCccc-----eeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC--CcceeEEEe
Q 032092            1 MVVGTADRNLVVFNLQNPQTE-----FKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ--QSKNFTFKC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~-----~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~--~~~~~~~~~   72 (147)
                      |++|+.|++|++||+......     .+.+...|...|..++|+|- .+.|++.+.|+.+.|  ||+|+  .+.....++
T Consensus       193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i--wD~R~~~~~~~~~~~a  270 (422)
T KOG0264|consen  193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI--WDTRSNTSKPSHSVKA  270 (422)
T ss_pred             EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE--EEcCCCCCCCcccccc
Confidence            688999999999999875431     12233356667999999995 568999999999999  88884  344444455


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC-CCeEEEeCCCCcEEEeecCC-ceeeecC
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI-HHTFATAGSDGAFNFWDKDS-KQRLKVF  147 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd-g~~latg~~Dg~i~iWd~~~-~~~~~~~  147 (147)
                      |..     .++++                              +|+|- +..|||||+|++|++||+++ .+++++|
T Consensus       271 h~~-----~vn~~------------------------------~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~  312 (422)
T KOG0264|consen  271 HSA-----EVNCV------------------------------AFNPFNEFILATGSADKTVALWDLRNLNKPLHTF  312 (422)
T ss_pred             cCC-----ceeEE------------------------------EeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence            554     46776                              99995 58999999999999999987 4556654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.63  E-value=6.2e-16  Score=117.86  Aligned_cols=137  Identities=14%  Similarity=0.150  Sum_probs=88.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++|..|++|+|||.++.+.. + +..+|.++|.|+.|.  .+.+++|++|.+|++  ||..+++++.++-+|.......
T Consensus       210 iVSGlrDnTikiWD~n~~~c~-~-~L~GHtGSVLCLqyd--~rviisGSSDsTvrv--WDv~tge~l~tlihHceaVLhl  283 (499)
T KOG0281|consen  210 IVSGLRDNTIKIWDKNSLECL-K-ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRV--WDVNTGEPLNTLIHHCEAVLHL  283 (499)
T ss_pred             hhcccccCceEEeccccHHHH-H-hhhcCCCcEEeeecc--ceEEEecCCCceEEE--EeccCCchhhHHhhhcceeEEE
Confidence            578999999999999987643 2 334677789999875  579999999999999  5556688888888887665444


Q ss_pred             eeccceeeeecCCCcceeeeeeeee----eeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRL----HLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .++.-.+++.+.|..+.++.-....    -.++-||    +.+.|  |.++++|+++|.+|++|++.+.++++
T Consensus       284 rf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvR  354 (499)
T KOG0281|consen  284 RFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVR  354 (499)
T ss_pred             EEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeeh
Confidence            4444455666666655444321111    1123344    23343  22455666666666666655555544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.63  E-value=3.3e-15  Score=121.93  Aligned_cols=139  Identities=17%  Similarity=0.261  Sum_probs=107.2

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      ++|+.|.+|++||+.+++. .+.+. +|..+|+++.++  +..+++|+.||+|++  ||+++++.+.++++|........
T Consensus       305 ~sgs~D~tVkVW~v~n~~~-l~l~~-~h~~~V~~v~~~--~~~lvsgs~d~~v~V--W~~~~~~cl~sl~gH~~~V~sl~  378 (537)
T KOG0274|consen  305 VSGSRDNTVKVWDVTNGAC-LNLLR-GHTGPVNCVQLD--EPLLVSGSYDGTVKV--WDPRTGKCLKSLSGHTGRVYSLI  378 (537)
T ss_pred             eeccCCceEEEEeccCcce-EEEec-cccccEEEEEec--CCEEEEEecCceEEE--EEhhhceeeeeecCCcceEEEEE
Confidence            4678999999999998864 34443 377899999988  899999999999999  88888999999999998655444


Q ss_pred             eccceeeeecCCCc-ceeeeeee--eeeeeeeceEEEE--EecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           82 VISFTSILAGDAPK-YSSFYKVK--RLHLFVKSHVIVL--FVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        82 v~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~--fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +.....+.+|+-|+ ++++....  +....+++|.++.  ....++.|.+++.|++|++||.++++++++
T Consensus       379 ~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~  448 (537)
T KOG0274|consen  379 VDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT  448 (537)
T ss_pred             ecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee
Confidence            44423455555554 55544222  4566788887654  355789999999999999999999998875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.62  E-value=6.8e-15  Score=112.38  Aligned_cols=138  Identities=14%  Similarity=0.208  Sum_probs=106.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.|.++|+||+|+.. .+..+. +|+.+|.++.+.|-..++++||.|++|++  ||.+.|+...++..|+....+.
T Consensus       250 l~t~grDst~RvWDiRtr~-~V~~l~-GH~~~V~~V~~~~~dpqvit~S~D~tvrl--WDl~agkt~~tlt~hkksvral  325 (460)
T KOG0285|consen  250 LVTGGRDSTIRVWDIRTRA-SVHVLS-GHTNPVASVMCQPTDPQVITGSHDSTVRL--WDLRAGKTMITLTHHKKSVRAL  325 (460)
T ss_pred             EEecCCcceEEEeeecccc-eEEEec-CCCCcceeEEeecCCCceEEecCCceEEE--eeeccCceeEeeecccceeeEE
Confidence            6899999999999999975 355553 57789999999998889999999999999  8889999999998887654433


Q ss_pred             eec-cceeeeecCCCcceeeeeeeee-eeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           81 SVI-SFTSILAGDAPKYSSFYKVKRL-HLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        81 ~v~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      ... ...++++++.+.++-+...+.. ...+.+|+    .++.+.|| ++.+|+.+|.+.+||.+++-.
T Consensus       326 ~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n  393 (460)
T KOG0285|consen  326 CLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN  393 (460)
T ss_pred             ecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence            333 2235677888877766633322 33467774    46777775 788999999999999998754

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.62  E-value=1.7e-14  Score=114.44  Aligned_cols=140  Identities=14%  Similarity=0.153  Sum_probs=99.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec--CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC--C
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN--SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD--G   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~--~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~--~   76 (147)
                      +|+++.||+|.|||=.++++ +..+.  .+|+..|.+|+|+||++.|++.+.|.+++|  ||..+++.+.++..-..  .
T Consensus       205 Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI--WdVs~~slv~t~~~~~~v~d  281 (603)
T KOG0318|consen  205 FATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI--WDVSTNSLVSTWPMGSTVED  281 (603)
T ss_pred             EEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEEEecCCceEEE--EEeeccceEEEeecCCchhc
Confidence            47899999999999999986 34444  367889999999999999999999999999  67777777777764332  1


Q ss_pred             ceEEeec-cceeeeecCCCcceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           77 SETCSVI-SFTSILAGDAPKYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        77 ~~~~~v~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      .....+. ..-+++.+-...+..+..- -.+...+.||    ..++.+||+++|.||+.||.|.=||..++..
T Consensus       282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence            1111111 1123333433333333311 1245566777    4699999999999999999999999987643

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.62  E-value=2.5e-15  Score=116.81  Aligned_cols=110  Identities=20%  Similarity=0.265  Sum_probs=91.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++++.||+....|++++.+............+++.+|+|||..|++|+.||.++|  ||+.++.....|.+|..     
T Consensus       318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki--wdlks~~~~a~Fpght~-----  390 (506)
T KOG0289|consen  318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI--WDLKSQTNVAKFPGHTG-----  390 (506)
T ss_pred             EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE--EEcCCccccccCCCCCC-----
Confidence            46889999999999999976432222122345899999999999999999999999  88888888888998875     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ++.++                              +|+-+|-+||++..|+.|++||+++.+-+++|
T Consensus       391 ~vk~i------------------------------~FsENGY~Lat~add~~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  391 PVKAI------------------------------SFSENGYWLATAADDGSVKLWDLRKLKNFKTI  427 (506)
T ss_pred             ceeEE------------------------------EeccCceEEEEEecCCeEEEEEehhhccccee
Confidence            57777                              99999999999999999999999987766654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=8.3e-15  Score=121.93  Aligned_cols=145  Identities=14%  Similarity=0.267  Sum_probs=101.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC-CC-----C--------c-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD-SQ-----Q--------S-   65 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~-~~-----~--------~-   65 (147)
                      |++||+|.+|+|||.++.+. +... .+|..-|.|-+|+|..+.++++|.|.+|++||+.- +.     +        . 
T Consensus       108 IlSASDDQTIrIWNwqsr~~-iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~  185 (1202)
T KOG0292|consen  108 ILSASDDQTIRIWNWQSRKC-IAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ  185 (1202)
T ss_pred             EEEccCCCeEEEEeccCCce-EEEE-ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc
Confidence            57899999999999999864 4444 35677799999999999999999999999954421 10     0        0 


Q ss_pred             ------------ceeEEEeccCCceEEee-ccceeeeecCCCc-ceeeeeeeee---eeeeece----EEEEEecCCCeE
Q 032092           66 ------------KNFTFKCHRDGSETCSV-ISFTSILAGDAPK-YSSFYKVKRL---HLFVKSH----VIVLFVQIHHTF  124 (147)
Q Consensus        66 ------------~~~~~~~h~~~~~~~~v-~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~----~~~~fspdg~~l  124 (147)
                                  ..+.+.||.....-.+. ..+.++.+|+||. +..|+--+.-   .-+..||    .++-|||...++
T Consensus       186 ~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lI  265 (1202)
T KOG0292|consen  186 GNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLI  265 (1202)
T ss_pred             cchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcccee
Confidence                        01123445432110111 1345678888884 3333322221   2245666    479999999999


Q ss_pred             EEeCCCCcEEEeecCCceeeecC
Q 032092          125 ATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       125 atg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      +|.|.|++|+|||+++++.+++|
T Consensus       266 lSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  266 LSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             EecCCCccEEEEecccccceeee
Confidence            99999999999999999999887

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.62  E-value=1.1e-15  Score=116.42  Aligned_cols=141  Identities=11%  Similarity=0.145  Sum_probs=103.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC-cceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~-~~~~~~~~h~~~~~~   79 (147)
                      |++|+.|.+|++||+++++ +++++- +|-..|.-+.|+  ..++++++.|.+|++|+++..+. .....+.||+.....
T Consensus       250 iisGSSDsTvrvWDv~tge-~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv  325 (499)
T KOG0281|consen  250 IVSGSSDSTVRVWDVNTGE-PLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  325 (499)
T ss_pred             EEecCCCceEEEEeccCCc-hhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence            5799999999999999996 455443 455568889987  57999999999999976665431 223456788865332


Q ss_pred             EeeccceeeeecCCCcceeeee-eeeeeeeeeceEE-EEEec-CCCeEEEeCCCCcEEEeecCCceeee
Q 032092           80 CSVISFTSILAGDAPKYSSFYK-VKRLHLFVKSHVI-VLFVQ-IHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~fsp-dg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      -...+-.++++++|-+++++.- .-.....++||-+ +|.-. .|+++++|++|.+|++||++.|++++
T Consensus       326 Vdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  326 VDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR  394 (499)
T ss_pred             eccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHH
Confidence            2334446677888888877663 2244667788853 44433 56999999999999999999998875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=5.8e-15  Score=120.53  Aligned_cols=136  Identities=19%  Similarity=0.221  Sum_probs=103.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      +||||.|++.+||++.+.+ ....+ ++|+..|.|+.|+|..+.+|++|.|++|+|  |.+.+..-+.+|.||+....  
T Consensus       478 iAT~SqDktaKiW~le~~~-l~~vL-sGH~RGvw~V~Fs~~dq~laT~SgD~TvKI--W~is~fSClkT~eGH~~aVlra  553 (775)
T KOG0319|consen  478 IATGSQDKTAKIWDLEQLR-LLGVL-SGHTRGVWCVSFSKNDQLLATCSGDKTVKI--WSISTFSCLKTFEGHTSAVLRA  553 (775)
T ss_pred             EEecccccceeeecccCce-EEEEe-eCCccceEEEEeccccceeEeccCCceEEE--EEeccceeeeeecCccceeEee
Confidence            5899999999999999654 33444 467778999999999999999999999999  66666788999999987642  


Q ss_pred             EEeeccceeeeecCCCcceeee-eeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           79 TCSVISFTSILAGDAPKYSSFY-KVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .|.-+.-.++++|++..+.+|. +.+.....+.+|+    +++-+|...+++||++||.|.+|.-.+
T Consensus       554 ~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  554 SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            3333333345556655555554 2234466788886    477889989999999999999997533

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=5.1e-15  Score=121.84  Aligned_cols=105  Identities=15%  Similarity=0.223  Sum_probs=81.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      |++++.|++||||++.+.+. .+.+.  |..-|+||+|+| |.++|++|+.||.|+|  |++...+...-...+.     
T Consensus       383 LLSSSMDKTVRLWh~~~~~C-L~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRi--WsI~d~~Vv~W~Dl~~-----  452 (712)
T KOG0283|consen  383 LLSSSMDKTVRLWHPGRKEC-LKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRL--WSISDKKVVDWNDLRD-----  452 (712)
T ss_pred             eEeccccccEEeecCCCcce-eeEEe--cCCeeEEEEecccCCCcEeecccccceEE--eecCcCeeEeehhhhh-----
Confidence            68899999999999998765 35553  444599999999 6889999999999999  6665333322222221     


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                       .|+++                              +|+|||+..+.|+.+|.+++|++...+...+
T Consensus       453 -lITAv------------------------------cy~PdGk~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  453 -LITAV------------------------------CYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             -hheeE------------------------------EeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence             24555                              9999999999999999999999987776543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=4.6e-15  Score=123.42  Aligned_cols=136  Identities=15%  Similarity=0.148  Sum_probs=103.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET-   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~-   79 (147)
                      ++++-..|.|++||-|-+. .+.++. .|.+||+.|+|+|++..|++|++|-+|++|+++  +.+.++++.||-..... 
T Consensus        24 ILtslHsG~IQlWDYRM~t-li~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk--~rrclftL~GHlDYVRt~   99 (1202)
T KOG0292|consen   24 ILTSLHSGVIQLWDYRMGT-LIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK--TRRCLFTLLGHLDYVRTV   99 (1202)
T ss_pred             EEEeecCceeeeehhhhhh-HHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecc--cceehhhhccccceeEEe
Confidence            3577789999999999885 455554 477899999999999999999999999996555  45788899999764211 


Q ss_pred             -EeeccceeeeecCCCcceeeeee-eeeeeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           80 -CSVISFTSILAGDAPKYSSFYKV-KRLHLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        80 -~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                       +--.--+++++|+|-++++|.=. ......+.||+.    ..|||..-.++|||-|.+||+||+.-
T Consensus       100 ~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  100 FFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             eccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence             11111144555666677776633 345667888864    58999889999999999999999854

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=2.5e-14  Score=105.09  Aligned_cols=136  Identities=15%  Similarity=0.216  Sum_probs=97.5

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++|.|++|+|||...++. +.++. ++..-|...+|||. ++.|++.|.||+++|||++.. |+.+. +..|..+..++
T Consensus       121 ltsSWD~TiKLW~~~r~~S-v~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~-i~ah~~Eil~c  196 (311)
T KOG0277|consen  121 LTSSWDGTIKLWDPNRPNS-VQTFN-GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMS-IEAHNSEILCC  196 (311)
T ss_pred             EeeccCCceEeecCCCCcc-eEeec-CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeE-EEeccceeEee
Confidence            5779999999999998864 45554 35566999999995 889999999999999555443 55544 77887554433


Q ss_pred             eec--cceeeeecCCC-ccee--eeeeeeeeeeeece----EEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092           81 SVI--SFTSILAGDAP-KYSS--FYKVKRLHLFVKSH----VIVLFVQIH-HTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        81 ~v~--~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~----~~~~fspdg-~~latg~~Dg~i~iWd~~~~  141 (147)
                      .-+  .-.++..|+.+ .++.  .+++......++||    -++.|||-. ..|||++.|-++||||.+..
T Consensus       197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence            222  22334445555 4433  33555555567777    369999976 89999999999999998743

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=1.3e-15  Score=124.11  Aligned_cols=108  Identities=19%  Similarity=0.306  Sum_probs=91.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.+|+|++||+.+.+ .++++. .|...+.+|+|+|-+.++|.|+.|+.+.+  ||.+..-..+++.+|..     
T Consensus        85 laagsasgtiK~wDleeAk-~vrtLt-gh~~~~~sv~f~P~~~~~a~gStdtd~~i--wD~Rk~Gc~~~~~s~~~-----  155 (825)
T KOG0267|consen   85 LAAGSASGTIKVWDLEEAK-IVRTLT-GHLLNITSVDFHPYGEFFASGSTDTDLKI--WDIRKKGCSHTYKSHTR-----  155 (825)
T ss_pred             hcccccCCceeeeehhhhh-hhhhhh-ccccCcceeeeccceEEecccccccccee--hhhhccCceeeecCCcc-----
Confidence            5788999999999999875 355443 35557899999999999999999999999  88886566778887764     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .++.+                              .|+|+|++++.|+.|.+++|||+.-|+.+++|
T Consensus       156 vv~~l------------------------------~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef  192 (825)
T KOG0267|consen  156 VVDVL------------------------------RLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF  192 (825)
T ss_pred             eeEEE------------------------------eecCCCceeeccCCcceeeeeccccccccccc
Confidence            45555                              99999999999999999999999999988776

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1.6e-13  Score=101.56  Aligned_cols=137  Identities=11%  Similarity=0.140  Sum_probs=102.2

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC-CCcceeEEEeccCC--
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS-QQSKNFTFKCHRDG--   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~-~~~~~~~~~~h~~~--   76 (147)
                      ||+||-|.++.||--..++- .+..++ +|+.+|.|++||++|++||+++.|..+-||..|-. +......++.|...  
T Consensus        76 La~aSFD~t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK  154 (312)
T KOG0645|consen   76 LASASFDATVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK  154 (312)
T ss_pred             EEEeeccceEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence            68999999999998876531 233444 56778999999999999999999999988555521 12334566778764  


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeee----eeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeec
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVK----RLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                      ...+-++...+++.|=|+.+++++...    ...+.+.+|.    +++|+|.|..|++++.|++++||-.
T Consensus       155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  155 HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            234545544456667777888877552    3466788884    6899999999999999999999983

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=7.2e-15  Score=117.54  Aligned_cols=108  Identities=19%  Similarity=0.310  Sum_probs=90.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |.+|+.|+.|..+|++..+..+. ....|..+|-.++|++|+++||+|+.|+.+.|  ||.....++.++..|+.     
T Consensus       273 lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~I--wd~~~~~p~~~~~~H~a-----  344 (484)
T KOG0305|consen  273 LSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFI--WDGLSPEPKFTFTEHTA-----  344 (484)
T ss_pred             EEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEe--ccCCCccccEEEeccce-----
Confidence            46889999999999999865443 23356678999999999999999999999999  77776778888888886     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC-CCeEEEeCC--CCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI-HHTFATAGS--DGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd-g~~latg~~--Dg~i~iWd~~~~~~~~~  146 (147)
                      +|-++                              +|+|- ..+||+||+  |+.|++||..+++++..
T Consensus       345 AVKA~------------------------------awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~  383 (484)
T KOG0305|consen  345 AVKAL------------------------------AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS  383 (484)
T ss_pred             eeeEe------------------------------eeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence            36666                              99995 589999987  99999999999988753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.58  E-value=6.3e-14  Score=104.81  Aligned_cols=143  Identities=14%  Similarity=0.120  Sum_probs=106.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +|+|+.|..|.||++-...+-+-.+ ..|+..|..+.|++|+..+++++.|.+++.  ||.++|+..+.+++|.......
T Consensus        62 ~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~--wD~~tG~~~rk~k~h~~~vNs~  138 (338)
T KOG0265|consen   62 FASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRDGSHILSCGTDKTVRG--WDAETGKRIRKHKGHTSFVNSL  138 (338)
T ss_pred             EeecCCcceEEEEeccccccceeee-ccccceeEeeeeccCCCEEEEecCCceEEE--Eecccceeeehhccccceeeec
Confidence            5899999999999987654333333 357778999999999999999999999999  8989999999999998643222


Q ss_pred             eec--cceeeeecCCCc-ceeeeeeeee-eeee---eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVI--SFTSILAGDAPK-YSSFYKVKRL-HLFV---KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~--~~~~~~~~~~~~-~~~~~~~~~~-~~~~---~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+.  ...++.+|+||. ++++.-=++. ...+   ...+++.|..++..+.+|+-|+.|++||++....+++
T Consensus       139 ~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~  211 (338)
T KOG0265|consen  139 DPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT  211 (338)
T ss_pred             CccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE
Confidence            222  234677778775 4444322122 1122   2346789999998899999999999999988877764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.58  E-value=1.9e-14  Score=107.75  Aligned_cols=108  Identities=16%  Similarity=0.223  Sum_probs=80.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |+.||.||+||+|+++...+...+-...+..||.+++|+.||..+.+|+.|+++++  ||+.+++. ..+..|..     
T Consensus        43 ~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~--wDL~S~Q~-~~v~~Hd~-----  114 (347)
T KOG0647|consen   43 LAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL--WDLASGQV-SQVAAHDA-----  114 (347)
T ss_pred             EEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE--EEccCCCe-eeeeeccc-----
Confidence            35789999999999998322222222235578999999999999999999999999  78877643 45556764     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC--CeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH--HTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg--~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ++..+                              .|-+-.  +.|+|||=|+++++||++....+.+
T Consensus       115 pvkt~------------------------------~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t  152 (347)
T KOG0647|consen  115 PVKTC------------------------------HWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT  152 (347)
T ss_pred             ceeEE------------------------------EEecCCCcceeEecccccceeecccCCCCeeee
Confidence            34444                              555543  5899999999999999987766543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=2.1e-14  Score=117.75  Aligned_cols=107  Identities=22%  Similarity=0.334  Sum_probs=88.5

Q ss_pred             eEeec-CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            2 VVGTA-DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         2 ~~gs~-dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |.|+. -|.+-||+.+...-.++  +.+|...+.++++||||+++|+|+.||.|+|  ||..++-...+|..|+..    
T Consensus       323 A~g~~klgQLlVweWqsEsYVlK--QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv--Wn~~SgfC~vTFteHts~----  394 (893)
T KOG0291|consen  323 AFGCSKLGQLLVWEWQSESYVLK--QQGHSDRITSLAYSPDGQLIATGAEDGKVKV--WNTQSGFCFVTFTEHTSG----  394 (893)
T ss_pred             EEcCCccceEEEEEeeccceeee--ccccccceeeEEECCCCcEEEeccCCCcEEE--EeccCceEEEEeccCCCc----
Confidence            44433 57999999998643222  1234457999999999999999999999999  888888888899999863    


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                       +..+                              .|+..|+.+.+++-||+|+.||++..+..+||
T Consensus       395 -Vt~v------------------------------~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf  430 (893)
T KOG0291|consen  395 -VTAV------------------------------QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF  430 (893)
T ss_pred             -eEEE------------------------------EEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence             5555                              99999999999999999999999988888876

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.55  E-value=9.3e-15  Score=110.11  Aligned_cols=111  Identities=18%  Similarity=0.340  Sum_probs=82.7

Q ss_pred             CeEeecCCeEEEEECCCCc--cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQ--TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~--~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |++|+.|++|++||.....  +.++.+.  ...+|++|+|+|.|+++++|....++++  +|+.+.+--  ..+....++
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rl--Ydv~T~Qcf--vsanPd~qh  260 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRL--YDVNTYQCF--VSANPDDQH  260 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeE--EeccceeEe--eecCccccc
Confidence            6899999999999998753  2333333  2358999999999999999999999999  665432110  111111122


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ...++.+                              -+++.|++.+||+.||.|+|||--+++|+.+|
T Consensus       261 t~ai~~V------------------------------~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~  299 (430)
T KOG0640|consen  261 TGAITQV------------------------------RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI  299 (430)
T ss_pred             ccceeEE------------------------------EecCCccEEEEeccCCcEEeeccccHHHHHHH
Confidence            2234444                              99999999999999999999999999988775

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.55  E-value=3.3e-14  Score=108.56  Aligned_cols=98  Identities=17%  Similarity=0.211  Sum_probs=82.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |.+|+.|++|++||+.++..++ ++. +|...|+.++|+|.|++|+++.+|+++++  ||.++++.+.++..|..     
T Consensus       307 l~s~SrDktIk~wdv~tg~cL~-tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrv--wdl~~~~cmk~~~ah~h-----  377 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVSTGMCLF-TLV-GHDNWVRGVAFSPGGKYILSCADDKTLRV--WDLKNLQCMKTLEAHEH-----  377 (406)
T ss_pred             EEeecccceEEEEeccCCeEEE-EEe-cccceeeeeEEcCCCeEEEEEecCCcEEE--EEeccceeeeccCCCcc-----
Confidence            4688999999999999997654 343 46678999999999999999999999999  67776777777776664     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd  137 (147)
                      -++++                              +|+.+-.++.||+-|.++++|.
T Consensus       378 fvt~l------------------------------Dfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  378 FVTSL------------------------------DFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             eeEEE------------------------------ecCCCCceEEeccccceeeeee
Confidence            25566                              9998889999999999999995

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.55  E-value=6e-14  Score=108.55  Aligned_cols=108  Identities=16%  Similarity=0.223  Sum_probs=83.5

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      ++|-.|++||.||++.... ....  +....|++|..+++|..+.+++-|.++.+  +|.++.....+|...... ....
T Consensus       316 ~SgH~DkkvRfwD~Rs~~~-~~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~v--iDlRt~eI~~~~sA~g~k-~asD  389 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSADK-TRSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKV--IDLRTKEIRQTFSAEGFK-CASD  389 (459)
T ss_pred             eecccccceEEEeccCCce-eeEe--ecCcceeeEeeccCCeEEeeecCCCceee--eecccccEEEEeeccccc-cccc
Confidence            5778899999999999864 2333  33346999999999999999999999999  898876666666432110 0111


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .+.                              +.|||++.|+|+||+||.|+||++.++++.+
T Consensus       390 wtr------------------------------vvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~  423 (459)
T KOG0288|consen  390 WTR------------------------------VVFSPDGSYVAAGSADGSVYIWSVFTGKLEK  423 (459)
T ss_pred             cce------------------------------eEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence            222                              3999999999999999999999999998764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.54  E-value=4e-14  Score=108.60  Aligned_cols=106  Identities=15%  Similarity=0.251  Sum_probs=85.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCc---ceeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQS---KNFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~---~~~~~~~h~~~~   77 (147)
                      +.+++.|-+|+.||+.++.. ..++..  ..+++|++.+|..+.||+|+.|..|++  ||+|++.   ..++|.+|++- 
T Consensus       274 ~yS~SwDHTIk~WDletg~~-~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl--~DPR~~~gs~v~~s~~gH~nw-  347 (423)
T KOG0313|consen  274 IYSVSWDHTIKVWDLETGGL-KSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRL--WDPRTGDGSVVSQSLIGHKNW-  347 (423)
T ss_pred             eEeecccceEEEEEeecccc-eeeeec--CcceeEeecccccceeeecCCCCceee--cCCCCCCCceeEEeeecchhh-
Confidence            35789999999999999864 333332  247899999999999999999999999  9998753   24567788762 


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCce-eeec
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQ-RLKV  146 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~-~~~~  146 (147)
                          |.++                              .|+|.. .+|++|+.|+++++||.++-+ .|++
T Consensus       348 ----Vssv------------------------------kwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd  384 (423)
T KOG0313|consen  348 ----VSSV------------------------------KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD  384 (423)
T ss_pred             ----hhhe------------------------------ecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence                5566                              999976 789999999999999999865 6653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.54  E-value=1.2e-13  Score=113.44  Aligned_cols=142  Identities=18%  Similarity=0.269  Sum_probs=105.6

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v   82 (147)
                      +++..-.|.+||+|+++.....+....+.+++|+.-+||.-.||+|..||.|+|  |+..+...+.+|.+|+........
T Consensus        38 a~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqi--f~~~s~~~~~tfngHK~AVt~l~f  115 (888)
T KOG0306|consen   38 AVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQI--FSLESEEILITFNGHKAAVTTLKF  115 (888)
T ss_pred             EEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEe--eccCCCceeeeecccccceEEEEE
Confidence            445667899999999953212122123357999999999999999999999999  787777888999999986543333


Q ss_pred             ccc-eeeeecCCCcceeeeee--eeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           83 ISF-TSILAGDAPKYSSFYKV--KRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        83 ~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ... ..+++|+-|+..++|++  +.....+.||.    ..-|..+.+++++.|-|+.|++||+++..|.+|
T Consensus       116 d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~T  186 (888)
T KOG0306|consen  116 DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFET  186 (888)
T ss_pred             cccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeE
Confidence            333 34677888876555544  34466778885    355666668999999999999999999998875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.53  E-value=3.5e-13  Score=110.14  Aligned_cols=142  Identities=15%  Similarity=0.137  Sum_probs=106.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++++.|++|++||..++... ..-..+|...|.++++..-++.+++|+.|.++++  ||..+|.-...+.+|.....+.
T Consensus       221 ~~~~s~~~tl~~~~~~~~~~i-~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rv--Wd~~sg~C~~~l~gh~stv~~~  297 (537)
T KOG0274|consen  221 FKSGSDDSTLHLWDLNNGYLI-LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERV--WDCSTGECTHSLQGHTSSVRCL  297 (537)
T ss_pred             EEecCCCceeEEeecccceEE-EeeccCCCCCceeEEEecCCCEEEEEecCCcEEe--EecCCCcEEEEecCCCceEEEE
Confidence            468899999999999998643 3312356778999999776789999999999999  7788899999999998865555


Q ss_pred             eeccceeeeecCCCcceeeeeeeee-eeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRL-HLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .......+.++.|.++++|....+. ...+.||..    +..+  +.++.+|+.||+|++||..++++++++
T Consensus       298 ~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl  367 (537)
T KOG0274|consen  298 TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL  367 (537)
T ss_pred             EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee
Confidence            4444433333455566666644333 334555753    3443  789999999999999999999999864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.53  E-value=4.6e-14  Score=106.21  Aligned_cols=104  Identities=12%  Similarity=0.216  Sum_probs=87.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCC--EEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ--GFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~--~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      +|+|+.|-+|+|||+++..+. ..+. .|...|+++.|.|+-.  .|++|+.||.|.+  |+......+.++++|+.   
T Consensus        56 ~aSGssDetI~IYDm~k~~ql-g~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~i--w~~~~W~~~~slK~H~~---  128 (362)
T KOG0294|consen   56 VASGSSDETIHIYDMRKRKQL-GILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIII--WRVGSWELLKSLKAHKG---  128 (362)
T ss_pred             EeccCCCCcEEEEeccchhhh-ccee-ccccceEEEEecCCcchhheeeecCCCcEEE--EEcCCeEEeeeeccccc---
Confidence            589999999999999987542 3333 3456799999999854  8999999999999  77766788889999986   


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                        .|+.+                              +.||.|++-++-|.|+.++.||+-.|+.
T Consensus       129 --~Vt~l------------------------------siHPS~KLALsVg~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen  129 --QVTDL------------------------------SIHPSGKLALSVGGDQVLRTWNLVRGRV  161 (362)
T ss_pred             --cccee------------------------------EecCCCceEEEEcCCceeeeehhhcCcc
Confidence              37887                              9999999999999999999999987764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.52  E-value=4.8e-13  Score=99.01  Aligned_cols=142  Identities=13%  Similarity=0.109  Sum_probs=96.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC-----CeEEEEeecCCC-------Cccee
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE-----GRVGVHHLDDSQ-------QSKNF   68 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d-----g~i~i~~~d~~~-------~~~~~   68 (147)
                      |++|+.|.+++|||+.++++. .+...  ..+|+.+.|+++|++++..+.+     +.|.+  +|++.       ..+..
T Consensus        67 liTGSAD~t~kLWDv~tGk~l-a~~k~--~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~--fdi~~~~~~~~s~ep~~  141 (327)
T KOG0643|consen   67 LITGSADQTAKLWDVETGKQL-ATWKT--NSPVKRVDFSFGGNLILASTDKQMGYTCFVSV--FDIRDDSSDIDSEEPYL  141 (327)
T ss_pred             eeeccccceeEEEEcCCCcEE-EEeec--CCeeEEEeeccCCcEEEEEehhhcCcceEEEE--EEccCChhhhcccCceE
Confidence            689999999999999999764 34433  3579999999999988776543     55777  67662       33444


Q ss_pred             EEEeccCCc--eEEeeccceeeeecCCCcceeeeee--eee----eeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           69 TFKCHRDGS--ETCSVISFTSILAGDAPKYSSFYKV--KRL----HLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        69 ~~~~h~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .+..+....  ..+..-...++++..+..+..+...  +..    ..+-.+++.+.|+||..+|+||+-|.+.++||..+
T Consensus       142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             EecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence            555544321  2233333333444444444443311  111    22334567799999999999999999999999999


Q ss_pred             ceeeecC
Q 032092          141 KQRLKVF  147 (147)
Q Consensus       141 ~~~~~~~  147 (147)
                      .+++++|
T Consensus       222 l~v~Kty  228 (327)
T KOG0643|consen  222 LEVLKTY  228 (327)
T ss_pred             eeeEEEe
Confidence            9999987

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.52  E-value=3.4e-13  Score=105.08  Aligned_cols=135  Identities=16%  Similarity=0.216  Sum_probs=95.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC---CcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ---QSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~---~~~~~~~~~h~~~   76 (147)
                      ||+||.|.+|++||+.+++ +...+. .+..+|.+++|+|. +..|++|+.|+++.|  .|.|.   ......+.+.- +
T Consensus       259 LaSgsaD~TV~lWD~~~g~-p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l--~D~R~~~~s~~~wk~~g~V-E  333 (463)
T KOG0270|consen  259 LASGSADKTVKLWDVDTGK-PKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVAL--KDCRDPSNSGKEWKFDGEV-E  333 (463)
T ss_pred             EEecCCCceEEEEEcCCCC-cceehh-hcCCceeEEEecCCCceEEEeccccceEEe--eeccCccccCceEEeccce-E
Confidence            6899999999999999996 444443 45568999999996 789999999999999  77763   11222232211 1


Q ss_pred             ceEEeeccceeeeecCCCcceeee---eeeeeeeeeeceE----EEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092           77 SETCSVISFTSILAGDAPKYSSFY---KVKRLHLFVKSHV----IVLFVQIH-HTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~fspdg-~~latg~~Dg~i~iWd~~~  140 (147)
                      ...+...+-..+..|.+++...+.   +..+..+.+++|.    .+++++.- .+++|++.|+.|++|++..
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            122333333344556667544433   3345577788884    68999876 7899999999999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.6e-13  Score=109.92  Aligned_cols=137  Identities=17%  Similarity=0.174  Sum_probs=98.5

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe-ccCCceEEeec
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC-HRDGSETCSVI   83 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~-h~~~~~~~~v~   83 (147)
                      +....|++|+..+++.  ..+..-....|+++.|+|+|++||+|..+|.|.|  ||..+.+...++.+ |.....+..-+
T Consensus       194 alg~~vylW~~~s~~v--~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~i--wD~~~~k~~~~~~~~h~~rvg~laW~  269 (484)
T KOG0305|consen  194 ALGQSVYLWSASSGSV--TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQI--WDVKEQKKTRTLRGSHASRVGSLAWN  269 (484)
T ss_pred             EecceEEEEecCCCce--EEeEecCCCceEEEEECCCCCEEEEeecCCeEEE--EehhhccccccccCCcCceeEEEecc
Confidence            3446899999999863  2232222567999999999999999999999999  88777777777777 65543333333


Q ss_pred             cceeeeecCCCcceeeeeee---eeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           84 SFTSILAGDAPKYSSFYKVK---RLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      . ..+++|+.+..+..+.+.   +....+.+|-    .++|+||+++||+||.|+.+.|||..+.+.+++
T Consensus       270 ~-~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~  338 (484)
T KOG0305|consen  270 S-SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT  338 (484)
T ss_pred             C-ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE
Confidence            2 346667777554444332   2222466674    589999999999999999999999976655544

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.52  E-value=3.3e-13  Score=106.05  Aligned_cols=141  Identities=16%  Similarity=0.182  Sum_probs=95.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCC-cceeEEEe-ccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQ-SKNFTFKC-HRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~-~~~~~~~~-h~~~~   77 (147)
                      |++|++|+.+++||+.+... ...+ ..|+.-|+|.+|+|. +..+++|+-||+|++  ||++.. ..+.++.+ |.-+.
T Consensus       126 l~s~sDd~v~k~~d~s~a~v-~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl--~DtR~~~~~v~elnhg~pVe~  201 (487)
T KOG0310|consen  126 LVSGSDDKVVKYWDLSTAYV-QAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRL--WDTRSLTSRVVELNHGCPVES  201 (487)
T ss_pred             EEecCCCceEEEEEcCCcEE-EEEe-cCCcceeEeeccccCCCeEEEecCCCceEEE--EEeccCCceeEEecCCCceee
Confidence            57899999999999999752 2233 356667999999996 458999999999999  777754 55566642 22222


Q ss_pred             eEEeeccceee-eecCCCcceeeeee--eeeee----eeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           78 ETCSVISFTSI-LAGDAPKYSSFYKV--KRLHL----FVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        78 ~~~~v~~~~~~-~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ..+ +.+-.+| ++|++. +++|.-.  .+.+.    |.+..+.+.+..+++.|+|||-|+.|+++|+.+-+.++.+
T Consensus       202 vl~-lpsgs~iasAgGn~-vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  202 VLA-LPSGSLIASAGGNS-VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             EEE-cCCCCEEEEcCCCe-EEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence            222 2222233 444443 3333322  22222    3333467899999999999999999999998888888754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=8.2e-14  Score=108.97  Aligned_cols=108  Identities=18%  Similarity=0.269  Sum_probs=81.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC--C--------------
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ--Q--------------   64 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~--~--------------   64 (147)
                      |+|+|.|.++++||+..+.. ..++..+  .++.++++.|-++.+.+|+.+|.|.+  .+..+  +              
T Consensus       191 l~TaS~D~t~k~wdlS~g~L-Llti~fp--~si~av~lDpae~~~yiGt~~G~I~~--~~~~~~~~~~~~v~~k~~~~~~  265 (476)
T KOG0646|consen  191 LYTASEDRTIKLWDLSLGVL-LLTITFP--SSIKAVALDPAERVVYIGTEEGKIFQ--NLLFKLSGQSAGVNQKGRHEEN  265 (476)
T ss_pred             EEEecCCceEEEEEecccee-eEEEecC--CcceeEEEcccccEEEecCCcceEEe--eehhcCCccccccccccccccc
Confidence            57899999999999999964 4455443  46999999999999999999999988  44432  1              


Q ss_pred             cceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           65 SKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        65 ~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      .....+.||.++   .+++.                              ++.+-||.+|++|+.||+|+|||..+++++
T Consensus       266 t~~~~~~Gh~~~---~~ITc------------------------------Lais~DgtlLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  266 TQINVLVGHENE---SAITC------------------------------LAISTDGTLLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             ceeeeeccccCC---cceeE------------------------------EEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence            111122333321   02233                              499999999999999999999999999998


Q ss_pred             ec
Q 032092          145 KV  146 (147)
Q Consensus       145 ~~  146 (147)
                      ++
T Consensus       313 Rt  314 (476)
T KOG0646|consen  313 RT  314 (476)
T ss_pred             HH
Confidence            75

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.52  E-value=4.6e-14  Score=106.37  Aligned_cols=111  Identities=17%  Similarity=0.251  Sum_probs=90.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeE-ecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKR-INSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~-~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~~~   78 (147)
                      |++|.+..++++||+.+.+.-+.. ...+|...|+++.+|+.|+.+++|+.||.|+|  ||--+++-+.++. .|...  
T Consensus       231 llvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~Ikl--wDGVS~rCv~t~~~AH~gs--  306 (430)
T KOG0640|consen  231 LLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKL--WDGVSNRCVRTIGNAHGGS--  306 (430)
T ss_pred             EEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEe--eccccHHHHHHHHhhcCCc--
Confidence            578888999999999998642111 12245567999999999999999999999999  8877777776664 45442  


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                        .+.+.                              .|+.+|+++++.|.|..+++|.+.+++++.+|
T Consensus       307 --evcSa------------------------------~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  307 --EVCSA------------------------------VFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             --eeeeE------------------------------EEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence              35555                              99999999999999999999999999999875

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.49  E-value=4.1e-13  Score=100.70  Aligned_cols=139  Identities=25%  Similarity=0.343  Sum_probs=91.4

Q ss_pred             CeEeecCCeEEEEECCCCcc---------ce----eEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092            1 MVVGTADRNLVVFNLQNPQT---------EF----KRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~---------~~----~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      |++|+.||.|.+||+++-..         .+    +..+..|++.|.++.|-| |-..|.+++-|.++++  ||+.+-+.
T Consensus        59 mlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKV--WDtnTlQ~  136 (397)
T KOG4283|consen   59 MLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKV--WDTNTLQE  136 (397)
T ss_pred             EeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEE--eeccccee
Confidence            57899999999999987541         00    111224677899999999 5668999999999999  77766555


Q ss_pred             eeEEEeccC-CceEEeec--cceeeeecCCCcceeeeeeeee--eeeeece----EEEEEecCC-CeEEEeCCCCcEEEe
Q 032092           67 NFTFKCHRD-GSETCSVI--SFTSILAGDAPKYSSFYKVKRL--HLFVKSH----VIVLFVQIH-HTFATAGSDGAFNFW  136 (147)
Q Consensus        67 ~~~~~~h~~-~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~fspdg-~~latg~~Dg~i~iW  136 (147)
                      ...|+-... ..++.++-  +-++|++|-++.-.-+=+++..  .-.+.||    .++.|+|.. -.||||+.||.|++|
T Consensus       137 a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlW  216 (397)
T KOG4283|consen  137 AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLW  216 (397)
T ss_pred             eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEE
Confidence            555542110 01111111  2245666766632222233322  2245666    579999987 569999999999999


Q ss_pred             ecCCc
Q 032092          137 DKDSK  141 (147)
Q Consensus       137 d~~~~  141 (147)
                      |++.-
T Consensus       217 DiRra  221 (397)
T KOG4283|consen  217 DIRRA  221 (397)
T ss_pred             Eeecc
Confidence            98753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.49  E-value=5.6e-13  Score=112.46  Aligned_cols=142  Identities=15%  Similarity=0.150  Sum_probs=100.2

Q ss_pred             CeEee--cCCeEEEEECCCCcc-----------ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC------
Q 032092            1 MVVGT--ADRNLVVFNLQNPQT-----------EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD------   61 (147)
Q Consensus         1 l~~gs--~dg~v~iwdi~~~~~-----------~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~------   61 (147)
                      +|||+  .||.++||+...--.           .+-+. ..|...|+|+-|+|||++||+|++|.-|.||..+.      
T Consensus        28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~  106 (942)
T KOG0973|consen   28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTV  106 (942)
T ss_pred             EecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccc
Confidence            46788  899999998654210           11112 13456799999999999999999999999976662      


Q ss_pred             C----------CCcceeEEEeccCCc--eEEeeccceeeeecCCCcceeeeeee--eeeeeeeceE----EEEEecCCCe
Q 032092           62 S----------QQSKNFTFKCHRDGS--ETCSVISFTSILAGDAPKYSSFYKVK--RLHLFVKSHV----IVLFVQIHHT  123 (147)
Q Consensus        62 ~----------~~~~~~~~~~h~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~fspdg~~  123 (147)
                      .          +.+....+.+|....  .++++++. ++++++.|+..+.|+..  .....+.+|.    .++|-|-|++
T Consensus       107 fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky  185 (942)
T KOG0973|consen  107 FGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY  185 (942)
T ss_pred             ccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeecccccccceEECCccCe
Confidence            0          112455778888764  46666554 45556666555544443  3355788885    4899999999


Q ss_pred             EEEeCCCCcEEEeecCCceee
Q 032092          124 FATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus       124 latg~~Dg~i~iWd~~~~~~~  144 (147)
                      |||=+.|++|+||++.+-.+.
T Consensus       186 ~ASqsdDrtikvwrt~dw~i~  206 (942)
T KOG0973|consen  186 FASQSDDRTLKVWRTSDWGIE  206 (942)
T ss_pred             eeeecCCceEEEEEcccceee
Confidence            999999999999997764443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.48  E-value=9.2e-14  Score=109.14  Aligned_cols=107  Identities=19%  Similarity=0.235  Sum_probs=81.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      ||+|.+.|.|+|||.++... ...+. .|+.|+..+.|+|++ +.|++|++|+.+++  ||+.+.....++.+|+..   
T Consensus        83 laaGD~sG~V~vfD~k~r~i-LR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~--~d~s~a~v~~~l~~htDY---  155 (487)
T KOG0310|consen   83 LAAGDESGHVKVFDMKSRVI-LRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKY--WDLSTAYVQAELSGHTDY---  155 (487)
T ss_pred             EEccCCcCcEEEeccccHHH-HHHHh-hccCceeEEEecccCCeEEEecCCCceEEE--EEcCCcEEEEEecCCcce---
Confidence            57788899999999666322 22232 467899999999975 56778888888888  676666666688899874   


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc-eeeec
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK-QRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~-~~~~~  146 (147)
                        |.+.                              +|+|-. .+++|||+||+|++||++.. ..+.+
T Consensus       156 --VR~g------------------------------~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e  192 (487)
T KOG0310|consen  156 --VRCG------------------------------DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE  192 (487)
T ss_pred             --eEee------------------------------ccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence              5555                              899965 68999999999999999876 44443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=7.6e-13  Score=99.94  Aligned_cols=141  Identities=13%  Similarity=0.163  Sum_probs=91.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-ceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~~   79 (147)
                      ||+|+.||.|.|||+-+...  .++.++|-.||.|++|||||+.|+++|.|..|.+  ||+..|..++.++-...- ...
T Consensus        38 lAvGc~nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l--wDl~~gs~l~rirf~spv~~~q  113 (405)
T KOG1273|consen   38 LAVGCANGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL--WDLLKGSPLKRIRFDSPVWGAQ  113 (405)
T ss_pred             eeeeccCCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCCceeEE--EeccCCCceeEEEccCccceee
Confidence            68999999999999999752  2344567779999999999999999999999999  888888777665421100 000


Q ss_pred             Eeeccc-eeeee--cCCCcceeeeeeeeeeeee----eceE--E---EEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           80 CSVISF-TSILA--GDAPKYSSFYKVKRLHLFV----KSHV--I---VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        80 ~~v~~~-~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~--~---~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      +-+... ..++.  -..+.+..+.+  +.+..+    .+..  +   ..|.+.|+++++|.+.|.+.++|+++.+++..|
T Consensus       114 ~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~  191 (405)
T KOG1273|consen  114 WHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASF  191 (405)
T ss_pred             eccccCCeEEEEEecCCcEEEEecC--CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeee
Confidence            000000 00110  00011111111  111111    1111  1   258999999999999999999999999888754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.48  E-value=1.2e-13  Score=107.20  Aligned_cols=134  Identities=16%  Similarity=0.193  Sum_probs=99.9

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc----
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS----   77 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~----   77 (147)
                      ++.+.|..|++|+..+.. ....++  ...+|++.++|.|++++++.-.+..+++  ||..+.+.+..+.||+...    
T Consensus       370 l~v~~d~~i~l~~~e~~~-dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~L--WDl~e~~lv~kY~Ghkq~~fiIr  444 (519)
T KOG0293|consen  370 LLVTVDKKIRLYNREARV-DRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHL--WDLEENKLVRKYFGHKQGHFIIR  444 (519)
T ss_pred             EEEecccceeeechhhhh-hhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEE--eecchhhHHHHhhcccccceEEE
Confidence            344678889999987753 222232  2357999999999999999999999999  6666778888899998752    


Q ss_pred             eEEeeccceeeeecCCC-cceeee-eeeeeeeeeeceE----EEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092           78 ETCSVISFTSILAGDAP-KYSSFY-KVKRLHLFVKSHV----IVLFVQIH-HTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~~~fspdg-~~latg~~Dg~i~iWd~~~  140 (147)
                      .|+.-....+|++|++| .+..|. .-......++||.    -++|+|.. .+||+||.||+||||-...
T Consensus       445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            24444444678888888 444444 2335566889984    48999976 7899999999999998654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=4.3e-14  Score=115.47  Aligned_cols=105  Identities=20%  Similarity=0.315  Sum_probs=89.8

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      |.|+.|+.+++||++.... .+.+.+ +..-+++++|+|+|++++.|+.|.+++|  ||...|+.+.+|++|..     .
T Consensus       128 a~gStdtd~~iwD~Rk~Gc-~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki--~d~~agk~~~ef~~~e~-----~  198 (825)
T KOG0267|consen  128 ASGSTDTDLKIWDIRKKGC-SHTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKI--WDLTAGKLSKEFKSHEG-----K  198 (825)
T ss_pred             ccccccccceehhhhccCc-eeeecC-CcceeEEEeecCCCceeeccCCcceeee--ecccccccccccccccc-----c
Confidence            5789999999999996543 455544 5556999999999999999999999999  89988999999998875     3


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      +.++                              .|||..-++++||.|+++++||+++...+-
T Consensus       199 v~sl------------------------------e~hp~e~Lla~Gs~d~tv~f~dletfe~I~  232 (825)
T KOG0267|consen  199 VQSL------------------------------EFHPLEVLLAPGSSDRTVRFWDLETFEVIS  232 (825)
T ss_pred             cccc------------------------------ccCchhhhhccCCCCceeeeeccceeEEee
Confidence            5666                              899998999999999999999999877653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.47  E-value=4e-13  Score=103.81  Aligned_cols=109  Identities=15%  Similarity=0.272  Sum_probs=78.8

Q ss_pred             CeEeecCCeEEEEECCCCcc-----cee--EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC---------
Q 032092            1 MVVGTADRNLVVFNLQNPQT-----EFK--RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ---------   64 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-----~~~--~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~---------   64 (147)
                      ||||+.|..|+||-+.+.+.     .+.  ...+.|...|+++-|+|+|+.||+|+.+|.|.||  -...-         
T Consensus        29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW--k~~~~~~~~~d~e~  106 (434)
T KOG1009|consen   29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW--KQGDVRIFDADTEA  106 (434)
T ss_pred             eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE--EecCcCCccccchh
Confidence            68999999999999876532     111  1123455679999999999999999999999994  32210         


Q ss_pred             ---c----ceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092           65 ---S----KNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus        65 ---~----~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd  137 (147)
                         +    ....+.+|+.     .+..                              ++|+||++.+++|+.|..+++||
T Consensus       107 ~~~ke~w~v~k~lr~h~~-----diyd------------------------------L~Ws~d~~~l~s~s~dns~~l~D  151 (434)
T KOG1009|consen  107 DLNKEKWVVKKVLRGHRD-----DIYD------------------------------LAWSPDSNFLVSGSVDNSVRLWD  151 (434)
T ss_pred             hhCccceEEEEEeccccc-----chhh------------------------------hhccCCCceeeeeeccceEEEEE
Confidence               0    0011122222     1222                              49999999999999999999999


Q ss_pred             cCCceeeec
Q 032092          138 KDSKQRLKV  146 (147)
Q Consensus       138 ~~~~~~~~~  146 (147)
                      +..++++..
T Consensus       152 v~~G~l~~~  160 (434)
T KOG1009|consen  152 VHAGQLLAI  160 (434)
T ss_pred             eccceeEee
Confidence            999988764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=1.1e-12  Score=96.10  Aligned_cols=138  Identities=14%  Similarity=0.172  Sum_probs=95.5

Q ss_pred             CeEeecCCeEEEEECCCCcc--ceeEecCCCCcceEEEEE-cc-CCCEEEEEeeCCeEEEEeecCCCC--cceeEEEecc
Q 032092            1 MVVGTADRNLVVFNLQNPQT--EFKRINSPLKYQMRCVAA-FP-DQQGFWVGSIEGRVGVHHLDDSQQ--SKNFTFKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~--~~~~~~~~~~~~i~~la~-sp-dg~~l~~g~~dg~i~i~~~d~~~~--~~~~~~~~h~   74 (147)
                      ||||+.|++|+|+.++...+  +...+. +|..||..++| +| -|..||+++-||.|.|  |.-.++  ...+.+..|.
T Consensus        26 lATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi--Wke~~g~w~k~~e~~~h~  102 (299)
T KOG1332|consen   26 LATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYDGKVII--WKEENGRWTKAYEHAAHS  102 (299)
T ss_pred             eeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecCceEEE--EecCCCchhhhhhhhhhc
Confidence            69999999999999998643  333343 57789999999 45 4999999999999999  655444  3445556665


Q ss_pred             CCc--eEEeeccc--eeeeecCCCcceeeeee-------eee-eeeeeceEEEEEecC---C-----------CeEEEeC
Q 032092           75 DGS--ETCSVISF--TSILAGDAPKYSSFYKV-------KRL-HLFVKSHVIVLFVQI---H-----------HTFATAG  128 (147)
Q Consensus        75 ~~~--~~~~v~~~--~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~fspd---g-----------~~latg~  128 (147)
                      ...  .++.+...  .+..+++|..+.++.--       ++. ..+-.|.++++|.|-   |           +.|+|||
T Consensus       103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG  182 (299)
T KOG1332|consen  103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG  182 (299)
T ss_pred             ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence            431  23333333  33345777766654421       111 223345578999996   5           5699999


Q ss_pred             CCCcEEEeecCCc
Q 032092          129 SDGAFNFWDKDSK  141 (147)
Q Consensus       129 ~Dg~i~iWd~~~~  141 (147)
                      .|..|+||+..++
T Consensus       183 cDn~VkiW~~~~~  195 (299)
T KOG1332|consen  183 CDNLVKIWKFDSD  195 (299)
T ss_pred             CccceeeeecCCc
Confidence            9999999998775

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=9.3e-14  Score=117.73  Aligned_cols=145  Identities=12%  Similarity=0.215  Sum_probs=102.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--   77 (147)
                      ||+|+.||.|.|||+.+.+.++..-.......|.+|+|+.. ...||+++.+|++.|  ||+|..+.+..+..|....  
T Consensus       132 LASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i--WDlr~~~pii~ls~~~~~~~~  209 (1049)
T KOG0307|consen  132 LASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVI--WDLRKKKPIIKLSDTPGRMHC  209 (1049)
T ss_pred             eeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCcee--ccccCCCcccccccCCCccce
Confidence            68999999999999999887754321112346999999886 567899999999999  7888767776666554422  


Q ss_pred             --eEEeeccceee-eecCCCc--ceeeee---eeeeee----eeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCceee
Q 032092           78 --ETCSVISFTSI-LAGDAPK--YSSFYK---VKRLHL----FVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        78 --~~~~v~~~~~~-~~~~~~~--~~~~~~---~~~~~~----~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                        ..|..+..+.+ +++.|+.  +...|+   ......    |-+|.++++|+|.. .+|+|++-|+.|.+||.++++.+
T Consensus       210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl  289 (1049)
T KOG0307|consen  210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL  289 (1049)
T ss_pred             eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence              23444433333 4444442  222233   222323    44566789999966 99999999999999999999998


Q ss_pred             ecC
Q 032092          145 KVF  147 (147)
Q Consensus       145 ~~~  147 (147)
                      .+|
T Consensus       290 ~~~  292 (1049)
T KOG0307|consen  290 GEL  292 (1049)
T ss_pred             eec
Confidence            765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.45  E-value=6.9e-14  Score=110.83  Aligned_cols=108  Identities=22%  Similarity=0.355  Sum_probs=86.1

Q ss_pred             CeEeecCCeEEEEECCCCcccee-EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFK-RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~-~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      |++|++-.++.|||+..+...++ .+.+. .-.-.+|++|||.+..-++..||.|.|  ||+.+...+..|+||...   
T Consensus       480 LivGGeastlsiWDLAapTprikaeltss-apaCyALa~spDakvcFsccsdGnI~v--wDLhnq~~VrqfqGhtDG---  553 (705)
T KOG0639|consen  480 LIVGGEASTLSIWDLAAPTPRIKAELTSS-APACYALAISPDAKVCFSCCSDGNIAV--WDLHNQTLVRQFQGHTDG---  553 (705)
T ss_pred             EEeccccceeeeeeccCCCcchhhhcCCc-chhhhhhhcCCccceeeeeccCCcEEE--EEcccceeeecccCCCCC---
Confidence            68899999999999998753211 11110 012456899999999889999999999  888888889999999874   


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                        +.++                              ..++||..|-|||-|.+||.||+++++.+.+
T Consensus       554 --ascI------------------------------dis~dGtklWTGGlDntvRcWDlregrqlqq  588 (705)
T KOG0639|consen  554 --ASCI------------------------------DISKDGTKLWTGGLDNTVRCWDLREGRQLQQ  588 (705)
T ss_pred             --ceeE------------------------------EecCCCceeecCCCccceeehhhhhhhhhhh
Confidence              3444                              8899999999999999999999999877643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.45  E-value=3.4e-13  Score=110.71  Aligned_cols=110  Identities=21%  Similarity=0.303  Sum_probs=83.8

Q ss_pred             CeEeecCCeEEEEECCCC-----cc-ceeEec----CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092            1 MVVGTADRNLVVFNLQNP-----QT-EFKRIN----SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF   70 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~-----~~-~~~~~~----~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~   70 (147)
                      .++|+.|.+|++||..-.     .+ .+-.+.    -.....|.|+++||||++||+|-.|++++++++|.-  +.-.++
T Consensus       469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl--KFflsL  546 (888)
T KOG0306|consen  469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL--KFFLSL  546 (888)
T ss_pred             eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce--eeeeee
Confidence            479999999999996421     11 000000    012346999999999999999999999999888763  444455


Q ss_pred             EeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           71 KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        71 ~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      -||+.     ||.++                              ..|||+++++|||.|++|+||-++=|.|-+.|
T Consensus       547 YGHkL-----PV~sm------------------------------DIS~DSklivTgSADKnVKiWGLdFGDCHKS~  588 (888)
T KOG0306|consen  547 YGHKL-----PVLSM------------------------------DISPDSKLIVTGSADKNVKIWGLDFGDCHKSF  588 (888)
T ss_pred             ccccc-----ceeEE------------------------------eccCCcCeEEeccCCCceEEeccccchhhhhh
Confidence            67775     78887                              99999999999999999999999877776543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.45  E-value=8e-13  Score=103.03  Aligned_cols=110  Identities=18%  Similarity=0.247  Sum_probs=85.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++++.|-.|+||.+.....+  ....+|+.+|+.+..+|.|+||++++.||+...  -|.+++..+.... |.  ....
T Consensus       276 v~~aSad~~i~vws~~~~s~~--~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F--sd~~~g~~lt~vs-~~--~s~v  348 (506)
T KOG0289|consen  276 VITASADEIIRVWSVPLSSEP--TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF--SDISSGSQLTVVS-DE--TSDV  348 (506)
T ss_pred             eeecCCcceEEeeccccccCc--cccccccccceeeeeccCCcEEEEecCCceEEE--EEccCCcEEEEEe-ec--cccc
Confidence            367899999999999887543  344577889999999999999999999999987  6777776644332 21  1111


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+.+.                              +|||||..|.+|..||.++|||++++.-+..|
T Consensus       349 ~~ts~------------------------------~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F  385 (506)
T KOG0289|consen  349 EYTSA------------------------------AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF  385 (506)
T ss_pred             eeEEe------------------------------eEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence            24444                              99999999999999999999999887654433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.45  E-value=4.4e-13  Score=103.52  Aligned_cols=107  Identities=14%  Similarity=0.176  Sum_probs=87.0

Q ss_pred             CeEeecCCeEEEEECCCCcc------ceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092            1 MVVGTADRNLVVFNLQNPQT------EFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH   73 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~------~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h   73 (147)
                      ||+||+|.+|.||++..+..      |+..+. .|...|.-|+|+|. .+.|++++.|.+|.|  ||..++..+.++. |
T Consensus        97 IASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i--Wnv~tgeali~l~-h  172 (472)
T KOG0303|consen   97 IASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNTVSI--WNVGTGEALITLD-H  172 (472)
T ss_pred             eecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhccCCceEEE--EeccCCceeeecC-C
Confidence            68999999999999977532      222332 34456888999997 567899999999999  7777788888877 7


Q ss_pred             cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..     .+.++                              +|+-||.+|+|.+-|++|||||-++++.+.+
T Consensus       173 pd-----~i~S~------------------------------sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e  210 (472)
T KOG0303|consen  173 PD-----MVYSM------------------------------SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE  210 (472)
T ss_pred             CC-----eEEEE------------------------------EeccCCceeeeecccceeEEEcCCCCcEeee
Confidence            65     35666                              9999999999999999999999999887753

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.44  E-value=2.6e-13  Score=111.58  Aligned_cols=103  Identities=17%  Similarity=0.259  Sum_probs=79.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ++++.+.|.+++||+|.+.+.+.++ .+|.++|.|+.|+|++.+||+|+-|++|+||+|+....+++.+.  ++.    .
T Consensus       192 F~s~~dsG~lqlWDlRqp~r~~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTi----a  264 (839)
T KOG0269|consen  192 FASIHDSGYLQLWDLRQPDRCEKKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTI----A  264 (839)
T ss_pred             EEEecCCceEEEeeccCchhHHHHh-hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--eec----c
Confidence            3678899999999999987655444 36788999999999999999999999999977764333333332  222    2


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCC--CCcEEEeecCC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGS--DGAFNFWDKDS  140 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~--Dg~i~iWd~~~  140 (147)
                      +++.+                              .|-|+. ..|||+++  |-.|+|||++-
T Consensus       265 pv~rV------------------------------kWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  265 PVGRV------------------------------KWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             eeeee------------------------------eeccCccchhhhhhccccceEEEEeecc
Confidence            45554                              999987 67899887  77999999853

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.44  E-value=1.5e-12  Score=107.43  Aligned_cols=135  Identities=16%  Similarity=0.243  Sum_probs=92.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe--ccC---
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC--HRD---   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~--h~~---   75 (147)
                      +++||-||+||||+|...+. +. ... .+.-|++++|+|||++.++|+.+|.+++  +++...+....+.-  |+.   
T Consensus       425 FiSGSLD~KvRiWsI~d~~V-v~-W~D-l~~lITAvcy~PdGk~avIGt~~G~C~f--Y~t~~lk~~~~~~I~~~~~Kk~  499 (712)
T KOG0283|consen  425 FISGSLDGKVRLWSISDKKV-VD-WND-LRDLITAVCYSPDGKGAVIGTFNGYCRF--YDTEGLKLVSDFHIRLHNKKKK  499 (712)
T ss_pred             EeecccccceEEeecCcCee-Ee-ehh-hhhhheeEEeccCCceEEEEEeccEEEE--EEccCCeEEEeeeEeeccCccc
Confidence            47999999999999998753 22 221 2346999999999999999999999999  77765444443322  111   


Q ss_pred             -----Cce-EEeeccceeeeecCCCcceeeeee-eeeeeeeec------eEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           76 -----GSE-TCSVISFTSILAGDAPKYSSFYKV-KRLHLFVKS------HVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        76 -----~~~-~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                           .+. .++....-++.++-|..++++.-- ..+...++|      ..+.+|++||++|++|+.|..|+||+.+.
T Consensus       500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence                 111 122222223445666678877642 222333433      35689999999999999999999999754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.44  E-value=1.2e-12  Score=104.05  Aligned_cols=137  Identities=16%  Similarity=0.167  Sum_probs=90.4

Q ss_pred             CeEeecCCeEEEEECCCCccc---eeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE-------
Q 032092            1 MVVGTADRNLVVFNLQNPQTE---FKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF-------   70 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~---~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~-------   70 (147)
                      +++|+.|..|+.||++.....   ++.+......+|++++|||.|++|++.+..-+++|  +|.. |..+..+       
T Consensus       182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl--~DRd-G~~~~e~~KGDQYI  258 (641)
T KOG0772|consen  182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL--LDRD-GFEIVEFSKGDQYI  258 (641)
T ss_pred             eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE--EccC-Cceeeeeeccchhh
Confidence            589999999999999876532   33333333457999999999999999898899999  5543 3322222       


Q ss_pred             ------EeccCCce--EEe-eccceeeeecCCCcceeee--eeeeeeeeeece---------EEEEEecCCCeEEEeCCC
Q 032092           71 ------KCHRDGSE--TCS-VISFTSILAGDAPKYSSFY--KVKRLHLFVKSH---------VIVLFVQIHHTFATAGSD  130 (147)
Q Consensus        71 ------~~h~~~~~--~~~-v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~fspdg~~latg~~D  130 (147)
                            +||...-.  +|. -+.-..++.|-|...+.|.  +.++...++...         .+|+|+|||++||+|..|
T Consensus       259 ~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D  338 (641)
T KOG0772|consen  259 RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD  338 (641)
T ss_pred             hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC
Confidence                  34443211  122 2222334556555555544  333333343221         479999999999999999


Q ss_pred             CcEEEeecCC
Q 032092          131 GAFNFWDKDS  140 (147)
Q Consensus       131 g~i~iWd~~~  140 (147)
                      |.|.+|+..+
T Consensus       339 GSIQ~W~~~~  348 (641)
T KOG0772|consen  339 GSIQIWDKGS  348 (641)
T ss_pred             CceeeeecCC
Confidence            9999999743

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.43  E-value=2.7e-12  Score=98.27  Aligned_cols=99  Identities=20%  Similarity=0.265  Sum_probs=81.8

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeE-EEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRV-GVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i-~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      ..|.|.|||+.+-+ ++..+. .|+.++-+|||+|+|.+||++|..|+| |+  +.+.+|+.+++|+-  . ..+..+.+
T Consensus       151 t~GdV~l~d~~nl~-~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRV--f~v~~G~kl~eFRR--G-~~~~~IyS  223 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQ-PVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRV--FSVPEGQKLYEFRR--G-TYPVSIYS  223 (391)
T ss_pred             CCceEEEEEcccce-eeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEE--EEcCCccEeeeeeC--C-ceeeEEEE
Confidence            46899999999874 566665 688899999999999999999999994 56  88888999988852  1 12334556


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      +                              +|+||+++|++.|+.++|+|+.+++.
T Consensus       224 L------------------------------~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  224 L------------------------------SFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             E------------------------------EECCCCCeEEEecCCCeEEEEEeccc
Confidence            5                              99999999999999999999998754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.42  E-value=1e-12  Score=98.53  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=79.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCE-EEEEeeCCeEEEEeecCCCCc-ceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQG-FWVGSIEGRVGVHHLDDSQQS-KNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~-l~~g~~dg~i~i~~~d~~~~~-~~~~~~~h~~~~~   78 (147)
                      +|+|..|-+|+|.|++.+.. .+.+ ++|...|.++.|+|..++ |++|+.||.|++  ||+|... ....+.-|.... 
T Consensus       161 iA~gtr~~~VrLCDi~SGs~-sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irl--WDiRrasgcf~~lD~hn~k~-  235 (397)
T KOG4283|consen  161 IAAGTRDVQVRLCDIASGSF-SHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRL--WDIRRASGCFRVLDQHNTKR-  235 (397)
T ss_pred             EEEecCCCcEEEEeccCCcc-eeee-ccccCceEEEEeccCceeEEEecCCCceEEE--EEeecccceeEEeecccCcc-
Confidence            47788889999999999963 2444 467778999999998875 789999999999  6665321 122333333110 


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                       .++  +                 +.-..+....++++|+.||.++++++.|..+++|+.++|+
T Consensus       236 -~p~--~-----------------~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  236 -PPI--L-----------------KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             -Ccc--c-----------------cccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence             000  0                 0000111112356999999999999999999999998764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.42  E-value=4.2e-14  Score=107.25  Aligned_cols=109  Identities=20%  Similarity=0.264  Sum_probs=90.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEe--cC-----CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRI--NS-----PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-C   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~--~~-----~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~   72 (147)
                      |++|+.||-|.+||..+++. .+.+  ..     ....+|.|+.||.|.+++|+|+.||.|++  |.+++|..+..|. .
T Consensus       228 LvsgSvDGFiEVWny~~GKl-rKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv--Wri~tG~ClRrFdrA  304 (508)
T KOG0275|consen  228 LVSGSVDGFIEVWNYTTGKL-RKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV--WRIETGQCLRRFDRA  304 (508)
T ss_pred             Eeeccccceeeeehhccchh-hhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE--EEEecchHHHHhhhh
Confidence            68999999999999998853 1211  11     12346999999999999999999999999  7778888887775 6


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      |..     .+.++                              .||.|+..+.+++.|.+++|--+++|+++++|
T Consensus       305 Htk-----Gvt~l------------------------------~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf  344 (508)
T KOG0275|consen  305 HTK-----GVTCL------------------------------SFSRDNSQILSASFDQTVRIHGLKSGKCLKEF  344 (508)
T ss_pred             hcc-----CeeEE------------------------------EEccCcchhhcccccceEEEeccccchhHHHh
Confidence            665     35666                              99999999999999999999999999999876

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.41  E-value=1.4e-12  Score=102.06  Aligned_cols=140  Identities=16%  Similarity=0.236  Sum_probs=103.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ||+|..|..|.|||.++.+ +++.+. .|...|.+++|-.....+.+++.|.+|++  |+..+...+.++-+|.....  
T Consensus       217 latgg~d~~v~Iw~~~t~e-hv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkv--w~~~~~s~vetlyGHqd~v~--  290 (479)
T KOG0299|consen  217 LATGGRDRHVQIWDCDTLE-HVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKV--WSIDQLSYVETLYGHQDGVL--  290 (479)
T ss_pred             EEecCCCceEEEecCcccc-hhhccc-ccccceeeeeeecCccceeeeecCCceEE--EehhHhHHHHHHhCCcccee--
Confidence            5889999999999999986 445433 56778999999887788999999999999  55554556667788876532  


Q ss_pred             eeccce---eeeec-CCCcceeeeeeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFT---SILAG-DAPKYSSFYKVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+..+.   ++++| +|-.+++|+-.+...+.+.+|-    .++|=.+ ..|+||+.||.|.+|++.+++.++++
T Consensus       291 ~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  291 GIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             eechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence            233322   24455 6667888776555556666662    2455444 67999999999999999999998864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.41  E-value=1.5e-11  Score=88.80  Aligned_cols=135  Identities=21%  Similarity=0.229  Sum_probs=85.0

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE--EeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV--GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF   85 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~--g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~   85 (147)
                      |...||-++..+.+...+......+|.+++|+|+|+.||+  |..+++|.+  ||.+ ++.+.++.........+++..-
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l--yd~~-~~~i~~~~~~~~n~i~wsP~G~  113 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL--YDVK-GKKIFSFGTQPRNTISWSPDGR  113 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE--EcCc-ccEeEeecCCCceEEEECCCCC
Confidence            4566777755444555444333457999999999999765  456788999  7765 5666666533222345666666


Q ss_pred             eeeeecCCC--cceeeeeeeee--eeee--eceEEEEEecCCCeEEEeCC------CCcEEEeecCCceeeec
Q 032092           86 TSILAGDAP--KYSSFYKVKRL--HLFV--KSHVIVLFVQIHHTFATAGS------DGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        86 ~~~~~~~~~--~~~~~~~~~~~--~~~~--~~~~~~~fspdg~~latg~~------Dg~i~iWd~~~~~~~~~  146 (147)
                      .++++|...  +...+++....  ....  ..-+.++|+|||++|+|+..      |..++||+.. |++++.
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            566665432  32333333221  1111  12256899999999999975      7889999984 656543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=1.2e-12  Score=95.81  Aligned_cols=138  Identities=18%  Similarity=0.225  Sum_probs=90.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec-CCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCC-cceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~-~~~~~~~~h~~~   76 (147)
                      ||+|+.||+|-||.-.+++=. +..+ ..|+..|++|+|.|.  |-.|++++.||.|.|..+|...+ .......+|+..
T Consensus        73 LAScsYDgkVIiWke~~g~w~-k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G  151 (299)
T KOG1332|consen   73 LASCSYDGKVIIWKEENGRWT-KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG  151 (299)
T ss_pred             eeEeecCceEEEEecCCCchh-hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence            689999999999998887311 1111 135668999999997  67899999999999966665411 222334567643


Q ss_pred             c--eEEeec-------------cceeeeecC-CCcceeeeeee---eeeeeeeceE----EEEEecCC----CeEEEeCC
Q 032092           77 S--ETCSVI-------------SFTSILAGD-APKYSSFYKVK---RLHLFVKSHV----IVLFVQIH----HTFATAGS  129 (147)
Q Consensus        77 ~--~~~~v~-------------~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~----~~~fspdg----~~latg~~  129 (147)
                      .  .++.+.             ...++++|+ |..+.+++.-+   .....+.+|.    -++|.|.-    .+||+|++
T Consensus       152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq  231 (299)
T KOG1332|consen  152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ  231 (299)
T ss_pred             cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence            1  122221             123355544 44455554332   1223477885    38999963    57999999


Q ss_pred             CCcEEEeecC
Q 032092          130 DGAFNFWDKD  139 (147)
Q Consensus       130 Dg~i~iWd~~  139 (147)
                      ||++.||-.+
T Consensus       232 Dg~viIwt~~  241 (299)
T KOG1332|consen  232 DGTVIIWTKD  241 (299)
T ss_pred             CCcEEEEEec
Confidence            9999999754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.40  E-value=3.2e-13  Score=103.31  Aligned_cols=102  Identities=14%  Similarity=0.243  Sum_probs=80.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC-CcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~~~~   79 (147)
                      |++|++|+.|.|||+|+.. |++.+.-.  -.-+.|+|+|.+-.|.+|+.|..++.  +|.+. .+++..+++|..    
T Consensus       203 Las~~sDrsIvLyD~R~~~-Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~--~DmR~l~~p~~v~~dhvs----  273 (433)
T KOG0268|consen  203 LASCASDRSIVLYDLRQAS-PLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYT--YDMRNLSRPLNVHKDHVS----  273 (433)
T ss_pred             eeeeccCCceEEEecccCC-ccceeeee--ccccceecCccccceeecccccccee--hhhhhhcccchhhcccce----
Confidence            6788899999999999985 55544221  23578999999999999999999988  88874 344455555543    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                       ++-++                              +|||.|+-|+|||.|++|+|++.+.+.
T Consensus       274 -AV~dV------------------------------dfsptG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  274 -AVMDV------------------------------DFSPTGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             -eEEEe------------------------------ccCCCcchhccccccceEEEeecCCCc
Confidence             34455                              999999999999999999999998764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.40  E-value=1.9e-12  Score=98.15  Aligned_cols=138  Identities=10%  Similarity=0.100  Sum_probs=93.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEe----ecCCC-------------
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHH----LDDSQ-------------   63 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~----~d~~~-------------   63 (147)
                      +.+++.|-+-+||.+.++..+. ++. +|.+.|++|+|+|.+..+++++.|++.+||-    |...+             
T Consensus       163 ~gtASADhTA~iWs~Esg~CL~-~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~  240 (481)
T KOG0300|consen  163 CGTASADHTARIWSLESGACLA-TYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE  240 (481)
T ss_pred             eeecccccceeEEeecccccee-eec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence            3578999999999999997653 344 4667899999999999999999999999963    11110             


Q ss_pred             ---------------------CcceeEEEeccCCce---------------------EEee------cc-----------
Q 032092           64 ---------------------QSKNFTFKCHRDGSE---------------------TCSV------IS-----------   84 (147)
Q Consensus        64 ---------------------~~~~~~~~~h~~~~~---------------------~~~v------~~-----------   84 (147)
                                           ..++..|++|+.-..                     .|.+      +.           
T Consensus       241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc  320 (481)
T KOG0300|consen  241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC  320 (481)
T ss_pred             hcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccc
Confidence                                 012334566643100                     0000      00           


Q ss_pred             -----cee-eeecCCCccee--eeeeeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           85 -----FTS-ILAGDAPKYSS--FYKVKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        85 -----~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                           .-+ +++++|.+++.  |++-.+...+|.||    +++.|..|.+ +++|+.|.+|++||++..
T Consensus       321 stHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  321 STHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM  388 (481)
T ss_pred             ccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccc
Confidence                 012 34455555544  44445557788998    4789998865 789999999999999763

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=3.9e-12  Score=95.57  Aligned_cols=135  Identities=16%  Similarity=0.181  Sum_probs=100.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee--CCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI--EGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~--dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |+++++|-+++|||..++++ .+++.+ .++.+..+.|......++.++.  |.+|+.  +++.+++.+..|.||+....
T Consensus        29 litss~dDsl~LYd~~~g~~-~~ti~s-kkyG~~~~~Fth~~~~~i~sStk~d~tIry--Lsl~dNkylRYF~GH~~~V~  104 (311)
T KOG1446|consen   29 LITSSEDDSLRLYDSLSGKQ-VKTINS-KKYGVDLACFTHHSNTVIHSSTKEDDTIRY--LSLHDNKYLRYFPGHKKRVN  104 (311)
T ss_pred             EEEecCCCeEEEEEcCCCce-eeEeec-ccccccEEEEecCCceEEEccCCCCCceEE--EEeecCceEEEcCCCCceEE
Confidence            56789999999999999975 455543 4567889999887788887777  889998  88888999999999997532


Q ss_pred             ---EEeeccceeeeecCCCcceeeeeee----eeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           79 ---TCSVISFTSILAGDAPKYSSFYKVK----RLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        79 ---~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                         ..|++  ..+++++.|....+|++.    +....+.+.--+||.|+|-+||.|.....|+++|++.-
T Consensus       105 sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen  105 SLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             EEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence               22222  346666666544444443    22333444456799999999999988889999998754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=8.4e-13  Score=99.70  Aligned_cols=78  Identities=19%  Similarity=0.230  Sum_probs=67.4

Q ss_pred             eEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeece
Q 032092           33 MRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH  112 (147)
Q Consensus        33 i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (147)
                      ..|+.|+|.|.+||+|..||.|.|||++++  ..-..+.+|..     ++.++                           
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~-----pi~sl---------------------------   71 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVR-----PITSL---------------------------   71 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhcccc-----ceeEE---------------------------
Confidence            689999999999999999999999777765  34445666654     67777                           


Q ss_pred             EEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          113 VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       113 ~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                         +|||||+.|+|+|.|-.|.+||+.++.+++.+
T Consensus        72 ---~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   72 ---CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             ---EecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence               99999999999999999999999999888753

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=9.4e-12  Score=104.00  Aligned_cols=136  Identities=14%  Similarity=0.126  Sum_probs=91.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC--C--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD--G--   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~--~--   76 (147)
                      +|.|++|-.|++-++....+..  ...+|+.+|.+|.|+|+++.||+.+.||++++  ||+.++....++.+-..  .  
T Consensus       111 iaagsdD~~vK~~~~~D~s~~~--~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i--w~~~~~~~~~tl~~v~k~n~~~  186 (933)
T KOG1274|consen  111 IAAGSDDTAVKLLNLDDSSQEK--VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI--WDLQDGILSKTLTGVDKDNEFI  186 (933)
T ss_pred             EEeecCceeEEEEeccccchhe--eecccCCceeeeeEcCCCCEEEEEecCceEEE--EEcccchhhhhcccCCcccccc
Confidence            4788999999999998875432  23367889999999999999999999999999  66666666555543211  1  


Q ss_pred             ------ceEEeeccceeeeecCCCcceeeeeee-eeeeee------eceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           77 ------SETCSVISFTSILAGDAPKYSSFYKVK-RLHLFV------KSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        77 ------~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                            ...|.+.+..+.+.+.+..+.++..-. .....+      ....-++|+|.|+|||+++.||.|.|||.++
T Consensus       187 ~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  187 LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence                  012333333333444444444433110 000111      1123489999999999999999999999985

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.38  E-value=4.1e-12  Score=105.30  Aligned_cols=140  Identities=11%  Similarity=0.078  Sum_probs=93.0

Q ss_pred             eEeecCCeEEEEECCCCccceeEe--cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccCCce
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRI--NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSE   78 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~--~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~~~   78 (147)
                      +.|...|.|-+||++++-. .+.+  ...|+.+|+.||...-++.+++++.+|.++.|++..  ...+..+. ++.....
T Consensus       464 ~IG~S~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~--k~l~~~l~l~~~~~~i  540 (910)
T KOG1539|consen  464 FIGYSKGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK--KVLKKSLRLGSSITGI  540 (910)
T ss_pred             EEeccCCeEEEEEcccCee-ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC--cceeeeeccCCCccee
Confidence            4678899999999999832 2333  235778899999987788899999999999955543  33333332 1211111


Q ss_pred             EEeeccceeeeecCCC-cceeeee-eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           79 TCSVISFTSILAGDAP-KYSSFYK-VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .+.-.+ .+++..-++ .+.++.. ..++.+.|.||    +.++|||||++|++++.|++|++||+-++.++-
T Consensus       541 v~hr~s-~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID  612 (910)
T KOG1539|consen  541 VYHRVS-DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID  612 (910)
T ss_pred             eeeehh-hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence            110011 122222233 3444432 23556667777    569999999999999999999999999988764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=2.3e-12  Score=99.27  Aligned_cols=108  Identities=14%  Similarity=0.158  Sum_probs=91.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE-EEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT-FKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~-~~~h~~~~~~   79 (147)
                      +|+++.-+.+|+||.+.+.+|+..+... ..++.+++..|+|+.+++|..-|.+..  ||.+.++.... |++-     .
T Consensus       219 fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~gn~Iy~gn~~g~l~~--FD~r~~kl~g~~~kg~-----t  290 (412)
T KOG3881|consen  219 FATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSGNFIYTGNTKGQLAK--FDLRGGKLLGCGLKGI-----T  290 (412)
T ss_pred             EEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecCCCcEEEEecccchhhe--ecccCceeeccccCCc-----c
Confidence            5788999999999999998898887643 468999999999999999999999999  99987665543 3332     2


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .++.++                              ..||.++++|+||-|..+||+|++++++++.
T Consensus       291 Gsirsi------------------------------h~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  291 GSIRSI------------------------------HCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             CCcceE------------------------------EEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            356666                              8899999999999999999999999887753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.38  E-value=1.2e-11  Score=92.45  Aligned_cols=105  Identities=13%  Similarity=0.081  Sum_probs=75.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      +++++.|+.|++||+.+++. ...+...  ..+++++|+|+++.+ ++++.++.|++  ||..+++....+..+..    
T Consensus         4 ~~s~~~d~~v~~~d~~t~~~-~~~~~~~--~~~~~l~~~~dg~~l~~~~~~~~~v~~--~d~~~~~~~~~~~~~~~----   74 (300)
T TIGR03866         4 YVSNEKDNTISVIDTATLEV-TRTFPVG--QRPRGITLSKDGKLLYVCASDSDTIQV--IDLATGEVIGTLPSGPD----   74 (300)
T ss_pred             EEEecCCCEEEEEECCCCce-EEEEECC--CCCCceEECCCCCEEEEEECCCCeEEE--EECCCCcEEEeccCCCC----
Confidence            36788999999999998753 4444322  246789999999876 67788999999  77766665544443221    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCCcEEEeecCCceeeec
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg~i~iWd~~~~~~~~~  146 (147)
                        +..+                              +|+|+++.++ +++.|+.+++||+++++.+.+
T Consensus        75 --~~~~------------------------------~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~  110 (300)
T TIGR03866        75 --PELF------------------------------ALHPNGKILYIANEDDNLVTVIDIETRKVLAE  110 (300)
T ss_pred             --ccEE------------------------------EECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence              2233                              8999998665 555689999999998776653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.38  E-value=9.2e-12  Score=95.76  Aligned_cols=140  Identities=14%  Similarity=0.189  Sum_probs=99.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEe--cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC----------------
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRI--NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS----------------   62 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~--~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~----------------   62 (147)
                      +++|+.|.++++|-+..++...+..  ..+|+.+|.+|+..++|..|++|+.|.++.||+....                
T Consensus       162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~  241 (423)
T KOG0313|consen  162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ  241 (423)
T ss_pred             EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence            5789999999999998876422222  2267788999999999999999999999999651111                


Q ss_pred             -------CCcceeEEEeccCCce--EEeeccceeeeecCCCcceeee-eeeeeeeee---eceEEEEEecCCCeEEEeCC
Q 032092           63 -------QQSKNFTFKCHRDGSE--TCSVISFTSILAGDAPKYSSFY-KVKRLHLFV---KSHVIVLFVQIHHTFATAGS  129 (147)
Q Consensus        63 -------~~~~~~~~~~h~~~~~--~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~fspdg~~latg~~  129 (147)
                             ++.++.++.||+....  .++. +--..++|=|++++.+. ++.+....+   +.-+.++++|..++||+|++
T Consensus       242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss  320 (423)
T KOG0313|consen  242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS  320 (423)
T ss_pred             hhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCC
Confidence                   1235567788886432  3332 21234556666777666 333333322   33467899999999999999


Q ss_pred             CCcEEEeecCCc
Q 032092          130 DGAFNFWDKDSK  141 (147)
Q Consensus       130 Dg~i~iWd~~~~  141 (147)
                      |..+++||-+++
T Consensus       321 dr~irl~DPR~~  332 (423)
T KOG0313|consen  321 DRHIRLWDPRTG  332 (423)
T ss_pred             CCceeecCCCCC
Confidence            999999998764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=2.1e-11  Score=92.07  Aligned_cols=137  Identities=15%  Similarity=0.214  Sum_probs=88.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccC----
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRD----   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~----   75 (147)
                      |++|++||.|.+|++..-+ .++.+. +|+.+|+.|+++|.|+.-++-+.|+.+++  ||+-+|+.-+.++ .|..    
T Consensus       100 LlS~sdDG~i~iw~~~~W~-~~~slK-~H~~~Vt~lsiHPS~KLALsVg~D~~lr~--WNLV~Gr~a~v~~L~~~at~v~  175 (362)
T KOG0294|consen  100 LLSGSDDGHIIIWRVGSWE-LLKSLK-AHKGQVTDLSIHPSGKLALSVGGDQVLRT--WNLVRGRVAFVLNLKNKATLVS  175 (362)
T ss_pred             eeeecCCCcEEEEEcCCeE-Eeeeec-ccccccceeEecCCCceEEEEcCCceeee--ehhhcCccceeeccCCcceeeE
Confidence            6899999999999999874 455554 56778999999999999888899999999  6665544322211 0000    


Q ss_pred             ---Cce-------------------------------EEeeccceeeeecCCCcceeeeeee--eeeeeeeceE----EE
Q 032092           76 ---GSE-------------------------------TCSVISFTSILAGDAPKYSSFYKVK--RLHLFVKSHV----IV  115 (147)
Q Consensus        76 ---~~~-------------------------------~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~  115 (147)
                         .+.                               +.....-..++.|+|++...+++..  ...-.+.+|-    .+
T Consensus       176 w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i  255 (362)
T KOG0294|consen  176 WSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDI  255 (362)
T ss_pred             EcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeee
Confidence               000                               0000111124445555444333332  2233456772    12


Q ss_pred             --EEecCCCeEEEeCCCCcEEEeecCCc
Q 032092          116 --LFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus       116 --~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                        --.|++.+|+|+|+||.|++||++..
T Consensus       256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  256 ASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEEecCCceEEEEeccCceEEEEEcccc
Confidence              23578899999999999999998765

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.37  E-value=4.1e-12  Score=97.21  Aligned_cols=98  Identities=12%  Similarity=0.205  Sum_probs=83.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      .|+|+-||+|-|||+...+ +.+..  +|..+|..+.|-+ ..+|++++.||.|++  ||.|+|+.+.++.||..     
T Consensus       301 ~A~G~vdG~i~iyD~a~~~-~R~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~--wDaRtG~l~~~y~GH~~-----  369 (399)
T KOG0296|consen  301 AACGSVDGTIAIYDLAAST-LRHIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQ--WDARTGQLKFTYTGHQM-----  369 (399)
T ss_pred             hhcccccceEEEEecccch-hheec--cCCCceEEEEEcC-cchheeeccCceEEe--eeccccceEEEEecCch-----
Confidence            3788999999999999874 33322  4566799999988 789999999999999  99999999999999985     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      .+...                              +.+|+.++++|+|.|++.+|++..
T Consensus       370 ~Il~f------------------------------~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  370 GILDF------------------------------ALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             heeEE------------------------------EEcCCCcEEEEecCCCeEEEEecC
Confidence            35555                              999999999999999999999763

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.36  E-value=4.2e-12  Score=103.49  Aligned_cols=136  Identities=17%  Similarity=0.229  Sum_probs=100.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET-   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~-   79 (147)
                      |++|+.|.+|.+|.+.+.+ |+..+. +|+..|-|++...++. +++||+|.++++  |-.  ++..+.+.+|.....+ 
T Consensus        74 l~~g~~D~~i~v~~~~~~~-P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~Takv--W~~--~~l~~~l~gH~asVWAv  146 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQAE-PLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKV--WRI--GELVYSLQGHTASVWAV  146 (745)
T ss_pred             eEeecccceEEEEecCCCC-chhhhh-ccccceeeeecCCcCc-eEecccccceEE--ecc--hhhhcccCCcchheeee
Confidence            5689999999999999875 655543 5777899999888887 999999999999  644  5667778899864211 


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ........+++|.|..++.|+. .+....|+||+    .+++-|++ .|++|+.||.|++|++ ++.++.+
T Consensus       147 ~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~  214 (745)
T KOG0301|consen  147 ASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLE  214 (745)
T ss_pred             eecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeee
Confidence            1122333344455555555554 77778899996    47887874 5899999999999998 6665543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.36  E-value=1e-10  Score=87.41  Aligned_cols=139  Identities=12%  Similarity=0.111  Sum_probs=83.5

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCCCCcceeEEEecc-CCceE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKNFTFKCHR-DGSET   79 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~~~~~~h~-~~~~~   79 (147)
                      ++++.++.|++||+.+++. ...+...  ..+..++++|+++.+++ +..|+++++  ||+++++.+..+..+. .....
T Consensus        47 ~~~~~~~~v~~~d~~~~~~-~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~l~~--~d~~~~~~~~~~~~~~~~~~~~  121 (300)
T TIGR03866        47 VCASDSDTIQVIDLATGEV-IGTLPSG--PDPELFALHPNGKILYIANEDDNLVTV--IDIETRKVLAEIPVGVEPEGMA  121 (300)
T ss_pred             EEECCCCeEEEEECCCCcE-EEeccCC--CCccEEEECCCCCEEEEEcCCCCeEEE--EECCCCeEEeEeeCCCCcceEE
Confidence            4567889999999998753 3333222  23578899999997755 456899999  7776666655554221 11223


Q ss_pred             EeeccceeeeecCCCcceeeeeeeee--eeee---eceEEEEEecCCCeEE-EeCCCCcEEEeecCCceeee
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRL--HLFV---KSHVIVLFVQIHHTFA-TAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~fspdg~~la-tg~~Dg~i~iWd~~~~~~~~  145 (147)
                      +..+...+++++.+.....+++.+..  ...+   .....++|+|+|++|+ ++..|+.|++||+++++.++
T Consensus       122 ~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~  193 (300)
T TIGR03866       122 VSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK  193 (300)
T ss_pred             ECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee
Confidence            33333323333333332223232211  1111   1123579999998774 55569999999999887654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.35  E-value=3.6e-12  Score=103.91  Aligned_cols=142  Identities=19%  Similarity=0.321  Sum_probs=99.7

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      ++++|.||++++|+-+..+- +.+.+..+...-..++++-+ ++..+.+|+.|++|.+  |.+.+..+.+++++|.....
T Consensus        28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v--~~~~~~~P~~~LkgH~snVC  105 (745)
T KOG0301|consen   28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV--FKLSQAEPLYTLKGHKSNVC  105 (745)
T ss_pred             EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE--EecCCCCchhhhhcccccee
Confidence            46788999999999876542 11223333332233377776 4556999999999999  88888899999999998766


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      +..+.....+++|+=|.....|..........||.+    +++-|++ .++|||+|++|++|+.  ++++++|
T Consensus       106 ~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf  175 (745)
T KOG0301|consen  106 SLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTF  175 (745)
T ss_pred             eeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhh
Confidence            555554445566666644444444455556888864    5666776 8999999999999986  5555554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.35  E-value=2.7e-12  Score=97.29  Aligned_cols=102  Identities=21%  Similarity=0.218  Sum_probs=82.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEE---EeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTF---KCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~---~~h~~~   76 (147)
                      ||+|+.-|.|+|.|+.+++. .+.+. +|...|+.|.+.|+ .++++++|.|.+|+|  |++++..-+..|   .||+.+
T Consensus       108 la~~G~~GvIrVid~~~~~~-~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRl--wnI~~~~Cv~VfGG~egHrde  183 (385)
T KOG1034|consen  108 LAAGGYLGVIRVIDVVSGQC-SKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRL--WNIQTDVCVAVFGGVEGHRDE  183 (385)
T ss_pred             EEeecceeEEEEEecchhhh-cccee-ccCccchhhhcCCCCCcEEEEecCCceEEE--EeccCCeEEEEecccccccCc
Confidence            57788899999999999864 33333 46678999999997 578999999999999  788777766655   456653


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                           |-++                              .|+++|.+||+||+|-.+++|++..+
T Consensus       184 -----VLSv------------------------------D~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  184 -----VLSV------------------------------DFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             -----EEEE------------------------------EEcCCCCeeeccCCcceEEEEecChh
Confidence                 3343                              99999999999999999999999754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.34  E-value=1.6e-12  Score=105.61  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             CeEeecCCeEEEEECCCCcc------ceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092            1 MVVGTADRNLVVFNLQNPQT------EFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH   73 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~------~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h   73 (147)
                      ||+|++||.|+||-+..+..      |-+.+ ..|...|.+|.|+|= .+.|++++.|-+|+|  ||+++++....|.+|
T Consensus       643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~l--WDl~~~~~~~~l~gH  719 (1012)
T KOG1445|consen  643 LAVATDDGQINLWRLTANGLPENEMTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIEL--WDLANAKLYSRLVGH  719 (1012)
T ss_pred             eeecccCceEEEEEeccCCCCcccCCcceee-ecccceEEEEEecchhhhHhhhhhccceeee--eehhhhhhhheeccC
Confidence            68999999999999876432      11112 234456999999995 789999999999999  888888888889999


Q ss_pred             cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      ...     +-++                              +|||||+.+||-+-||+|++++-+++
T Consensus       720 tdq-----If~~------------------------------AWSpdGr~~AtVcKDg~~rVy~Prs~  752 (1012)
T KOG1445|consen  720 TDQ-----IFGI------------------------------AWSPDGRRIATVCKDGTLRVYEPRSR  752 (1012)
T ss_pred             cCc-----eeEE------------------------------EECCCCcceeeeecCceEEEeCCCCC
Confidence            863     4454                              99999999999999999999997664

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.34  E-value=2.8e-12  Score=94.41  Aligned_cols=107  Identities=21%  Similarity=0.281  Sum_probs=87.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.++.+||||+++++.|-+.+. .+...|+.+-|-...++|++++.|++||+  ||.++++..+++.-..      
T Consensus       115 lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~eD~~iLSSadd~tVRL--WD~rTgt~v~sL~~~s------  185 (334)
T KOG0278|consen  115 LLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCHEDKCILSSADDKTVRL--WDHRTGTEVQSLEFNS------  185 (334)
T ss_pred             hhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEeccCceEEeeccCCceEE--EEeccCcEEEEEecCC------
Confidence            57899999999999999887655554 34567999999888889999999999999  8889998888775322      


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      +++++                              ..++||++|.++. -+.|++||.++..+++.|
T Consensus       186 ~VtSl------------------------------Evs~dG~ilTia~-gssV~Fwdaksf~~lKs~  221 (334)
T KOG0278|consen  186 PVTSL------------------------------EVSQDGRILTIAY-GSSVKFWDAKSFGLLKSY  221 (334)
T ss_pred             CCcce------------------------------eeccCCCEEEEec-CceeEEeccccccceeec
Confidence            47777                              9999999877764 467999999999888765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=7.9e-12  Score=104.44  Aligned_cols=107  Identities=16%  Similarity=0.270  Sum_probs=89.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++|+.+++|.+|.+.+++.  ..+..+...|+++++|+-+|+++|.|++|-.|++  .+.........+++|..     
T Consensus        69 f~~~s~~~tv~~y~fps~~~--~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~--~~~~D~s~~~~lrgh~a-----  139 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGEE--DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKL--LNLDDSSQEKVLRGHDA-----  139 (933)
T ss_pred             eEEeeccceEEEeeCCCCCc--cceeeeeeccceEEEEecCCcEEEeecCceeEEE--EeccccchheeecccCC-----
Confidence            57899999999999999864  2222234468999999999999999999999999  66666666778888876     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ++..+                              .|+|.+++||+.+.||.|+|||++++.+.++
T Consensus       140 pVl~l------------------------------~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t  175 (933)
T KOG1274|consen  140 PVLQL------------------------------SYDPKGNFLAVSSCDGKVQIWDLQDGILSKT  175 (933)
T ss_pred             ceeee------------------------------eEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence            46666                              9999999999999999999999999987765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=5.9e-12  Score=100.64  Aligned_cols=107  Identities=18%  Similarity=0.350  Sum_probs=78.0

Q ss_pred             CeEeecCCeEEEEECCCCc-------cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeec----CCCC----c
Q 032092            1 MVVGTADRNLVVFNLQNPQ-------TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD----DSQQ----S   65 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~-------~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d----~~~~----~   65 (147)
                      |++|+.||++++|+++...       +|+.++. .|+.||.|++++++++.+.+|+.||+|++|.+-    +...    .
T Consensus       309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v  387 (577)
T KOG0642|consen  309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV  387 (577)
T ss_pred             EEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcch
Confidence            6899999999999993321       1333333 578899999999999999999999999995322    1111    1


Q ss_pred             ceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           66 KNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        66 ~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      ....+.||...     +..+                              ++|+....|++|++||++++|+..+...
T Consensus       388 l~~~l~Ghtda-----vw~l------------------------------~~s~~~~~Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  388 LSGTLLGHTDA-----VWLL------------------------------ALSSTKDRLLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             hccceeccccc-----eeee------------------------------eecccccceeeecCCceEEeeccCCcCc
Confidence            22344555542     3344                              8999888899999999999999866544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=7.1e-12  Score=98.27  Aligned_cols=111  Identities=21%  Similarity=0.221  Sum_probs=82.4

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeec-C------CCCcceeEEEecc
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD-D------SQQSKNFTFKCHR   74 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d-~------~~~~~~~~~~~h~   74 (147)
                      +.|+..|.+++|.+.+|.. ...+ ..|..+|+||.|+-||.+|++|+.||.|.+|..- .      .+-++...|..|+
T Consensus        97 ~ag~i~g~lYlWelssG~L-L~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht  174 (476)
T KOG0646|consen   97 LAGTISGNLYLWELSSGIL-LNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT  174 (476)
T ss_pred             EeecccCcEEEEEeccccH-HHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence            3445899999999999964 3444 4566689999999999999999999999996431 1      1223445555565


Q ss_pred             CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .     ++.++                            .+.+.+...+|+|+|.|.+|++||+..+.+|.++
T Consensus       175 l-----sITDl----------------------------~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti  214 (476)
T KOG0646|consen  175 L-----SITDL----------------------------QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI  214 (476)
T ss_pred             c-----eeEEE----------------------------EecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence            4     45554                            1244545578999999999999999999887653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=1.3e-11  Score=95.63  Aligned_cols=140  Identities=17%  Similarity=0.109  Sum_probs=88.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe-ccCC---
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC-HRDG---   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~-h~~~---   76 (147)
                      |++|+.||++|||+..+.+....  +..+..+|.+|.|||||+.|++-+.| ..+|  |+..++..+.+... .++.   
T Consensus       159 latgg~dg~lRv~~~Ps~~t~l~--e~~~~~eV~DL~FS~dgk~lasig~d-~~~V--W~~~~g~~~a~~t~~~k~~~~~  233 (398)
T KOG0771|consen  159 LATGGTDGTLRVWEWPSMLTILE--EIAHHAEVKDLDFSPDGKFLASIGAD-SARV--WSVNTGAALARKTPFSKDEMFS  233 (398)
T ss_pred             eeeccccceEEEEecCcchhhhh--hHhhcCccccceeCCCCcEEEEecCC-ceEE--EEeccCchhhhcCCcccchhhh
Confidence            68999999999999887754322  22344679999999999999999998 8999  67766644433321 1110   


Q ss_pred             ceEEeecc---ceeeeecCCC--cceeee----------eeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           77 SETCSVIS---FTSILAGDAP--KYSSFY----------KVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        77 ~~~~~v~~---~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      ..-+....   ...+++.-.+  .++..+          .+.+...-+++..+++-++||+++|-|+.||.|-|++..+-
T Consensus       234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l  313 (398)
T KOG0771|consen  234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL  313 (398)
T ss_pred             hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence            01111111   1122222222  111111          00111112345567899999999999999999999999988


Q ss_pred             eeee
Q 032092          142 QRLK  145 (147)
Q Consensus       142 ~~~~  145 (147)
                      ++++
T Consensus       314 q~~~  317 (398)
T KOG0771|consen  314 QRLQ  317 (398)
T ss_pred             eeeE
Confidence            8775

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.33  E-value=1.3e-11  Score=94.62  Aligned_cols=107  Identities=15%  Similarity=0.219  Sum_probs=79.9

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCC--CCcceEEEEEccCCCEEEE--EeeCCeEEEEeecCCCCcceeEEEeccCCc
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSP--LKYQMRCVAAFPDQQGFWV--GSIEGRVGVHHLDDSQQSKNFTFKCHRDGS   77 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~--~~~~i~~la~spdg~~l~~--g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~   77 (147)
                      +++-+ ..|+|||+++++ +.++++.-  +...+.++++++.+.++|.  ....|.|.|  ||..+-++..++.+|+.  
T Consensus       101 vV~Le-e~IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l--~d~~nl~~v~~I~aH~~--  174 (391)
T KOG2110|consen  101 VVCLE-ESIYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL--FDTINLQPVNTINAHKG--  174 (391)
T ss_pred             EEEEc-ccEEEEecccce-eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE--EEcccceeeeEEEecCC--
Confidence            34434 459999999995 56776542  2222444444444568875  445789999  78777788888889986  


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCc-EEEeecCCceeeecC
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGA-FNFWDKDSKQRLKVF  147 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~-i~iWd~~~~~~~~~~  147 (147)
                         ++-.+                              +|+|+|.+||||+..|+ |||+.+.+|+++++|
T Consensus       175 ---~lAal------------------------------afs~~G~llATASeKGTVIRVf~v~~G~kl~eF  212 (391)
T KOG2110|consen  175 ---PLAAL------------------------------AFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF  212 (391)
T ss_pred             ---ceeEE------------------------------EECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence               35555                              99999999999999996 789999999999987

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=1.3e-10  Score=94.72  Aligned_cols=142  Identities=16%  Similarity=0.213  Sum_probs=92.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ||++=.||.|.||+++..=-....+..+....|.+|+|++.+ .|-+.+.+|.|.-  ||+.++++.+.+.+-...-..-
T Consensus        40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~E--wDl~~lk~~~~~d~~gg~IWsi  116 (691)
T KOG2048|consen   40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITE--WDLHTLKQKYNIDSNGGAIWSI  116 (691)
T ss_pred             eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEE--EecccCceeEEecCCCcceeEE
Confidence            577888999999999985221223444445679999999655 5556677899987  8888887777665432211111


Q ss_pred             eecc-ceeeeecCCCcceeeeeee--ee--eeee---ec-eEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           81 SVIS-FTSILAGDAPKYSSFYKVK--RL--HLFV---KS-HVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        81 ~v~~-~~~~~~~~~~~~~~~~~~~--~~--~~~~---~~-~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .++. -+.++.|.|++...+....  ..  -..+   .+ .++++|+|++..+++|+.||.|++||++++.-++
T Consensus       117 ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  117 AINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH  190 (691)
T ss_pred             EeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence            1111 1334557677643333211  11  1112   22 2579999999999999999999999999887665

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.32  E-value=8.2e-12  Score=97.11  Aligned_cols=103  Identities=14%  Similarity=0.166  Sum_probs=80.3

Q ss_pred             CeEeecCCeEEEEECCCCcc--ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQT--EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~--~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      ||+|+.|.+.-||++-....  ..++.. +|..+|.-|.||||.+++++++-|..+.+  ||..+|.....+.. .   +
T Consensus       239 LAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~e~~~l--wDv~tgd~~~~y~~-~---~  311 (519)
T KOG0293|consen  239 LASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFDEVLSL--WDVDTGDLRHLYPS-G---L  311 (519)
T ss_pred             EeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCchHheee--ccCCcchhhhhccc-C---c
Confidence            68999999999999876532  233443 45568999999999999999999999988  77777776555531 1   1


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .+++.+.                              +|.|||..|++|+.|+.|..||++.
T Consensus       312 ~~S~~sc------------------------------~W~pDg~~~V~Gs~dr~i~~wdlDg  343 (519)
T KOG0293|consen  312 GFSVSSC------------------------------AWCPDGFRFVTGSPDRTIIMWDLDG  343 (519)
T ss_pred             CCCccee------------------------------EEccCCceeEecCCCCcEEEecCCc
Confidence            2234444                              9999999999999999999999854

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.32  E-value=6.5e-12  Score=103.23  Aligned_cols=115  Identities=17%  Similarity=0.229  Sum_probs=74.4

Q ss_pred             cceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE----EeeccceeeeecCCCc-ceeee-----
Q 032092           31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET----CSVISFTSILAGDAPK-YSSFY-----  100 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~----~~v~~~~~~~~~~~~~-~~~~~-----  100 (147)
                      ..+++|++||||+.||+|.--|.+++  +|+.+-+.......|..+..+    +++....++++++.+. +.++.     
T Consensus       460 ~G~R~~~vSp~gqhLAsGDr~GnlrV--y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  460 FGFRALAVSPDGQHLASGDRGGNLRV--YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             cceEEEEECCCcceecccCccCceEE--EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence            45999999999999999999999999  776554444445556544321    1222223344433332 11111     


Q ss_pred             ------------------------------------------eeeeeeeeeece--------EEEEEecCCCeEEEeCCC
Q 032092          101 ------------------------------------------KVKRLHLFVKSH--------VIVLFVQIHHTFATAGSD  130 (147)
Q Consensus       101 ------------------------------------------~~~~~~~~~~~~--------~~~~fspdg~~latg~~D  130 (147)
                                                                +-.....+..+|        .-++.-|.-+++++++.|
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD  617 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD  617 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence                                                      111111112222        127888989999999999


Q ss_pred             CcEEEeecCCceeeecC
Q 032092          131 GAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       131 g~i~iWd~~~~~~~~~~  147 (147)
                      ..|+|+|++++|..++|
T Consensus       618 rnirif~i~sgKq~k~F  634 (1080)
T KOG1408|consen  618 RNIRIFDIESGKQVKSF  634 (1080)
T ss_pred             cceEEEeccccceeeee
Confidence            99999999999998887

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=6.8e-12  Score=95.04  Aligned_cols=99  Identities=21%  Similarity=0.366  Sum_probs=74.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC---CC-----cceeEEEe
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS---QQ-----SKNFTFKC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~---~~-----~~~~~~~~   72 (147)
                      |++|+.|.+|.|||++ |+. ...+.. .+......+.||+|+++|+++-.-.+++  |++-   .|     ...+.++|
T Consensus       202 imsas~dt~i~lw~lk-Gq~-L~~idt-nq~~n~~aavSP~GRFia~~gFTpDVkV--wE~~f~kdG~fqev~rvf~LkG  276 (420)
T KOG2096|consen  202 IMSASLDTKICLWDLK-GQL-LQSIDT-NQSSNYDAAVSPDGRFIAVSGFTPDVKV--WEPIFTKDGTFQEVKRVFSLKG  276 (420)
T ss_pred             EEEecCCCcEEEEecC-Cce-eeeecc-ccccccceeeCCCCcEEEEecCCCCceE--EEEEeccCcchhhhhhhheecc
Confidence            5799999999999999 543 444542 2223466799999999999998888999  5432   11     23345666


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      |..     .|..+                              +|||+.+.++|.+-||+++|||++
T Consensus       277 H~s-----aV~~~------------------------------aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  277 HQS-----AVLAA------------------------------AFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             chh-----heeee------------------------------eeCCCcceeEEEecCCcEEEeecc
Confidence            664     34454                              999999999999999999999985

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.31  E-value=1.2e-11  Score=98.22  Aligned_cols=102  Identities=10%  Similarity=0.163  Sum_probs=81.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      |.+++++|.|.|||++.+. |.......|..|.+.|+|+|. ...|++-+.|.+|.+  +|.+..+....+....     
T Consensus       180 L~~asd~G~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~--yD~~s~~s~~~l~y~~-----  251 (673)
T KOG4378|consen  180 LSIASDKGAVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI--YDIRSQASTDRLTYSH-----  251 (673)
T ss_pred             eEeeccCCeEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceEEE--eecccccccceeeecC-----
Confidence            5688999999999999874 444455567778899999996 557888899999999  8887666555544211     


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                       |..++                              +|+|+|.+|+.|.+.|.|..||++..
T Consensus       252 -Plstv------------------------------af~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  252 -PLSTV------------------------------AFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             -Cccee------------------------------eecCCceEEEeecCCceEEEEecccC
Confidence             34455                              99999999999999999999999864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.29  E-value=3.7e-11  Score=99.81  Aligned_cols=106  Identities=20%  Similarity=0.324  Sum_probs=89.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ++.|+.+|.++|||+++++ .+.++.. ....|+++.-+|-=+.+|+|..+|+|.|  ++++.++.+.+|+....     
T Consensus       175 IvvGs~~G~lql~Nvrt~K-~v~~f~~-~~s~IT~ieqsPaLDVVaiG~~~G~Vii--fNlK~dkil~sFk~d~g-----  245 (910)
T KOG1539|consen  175 IVVGSSQGRLQLWNVRTGK-VVYTFQE-FFSRITAIEQSPALDVVAIGLENGTVII--FNLKFDKILMSFKQDWG-----  245 (910)
T ss_pred             EEEeecCCcEEEEEeccCc-EEEEecc-cccceeEeccCCcceEEEEeccCceEEE--EEcccCcEEEEEEcccc-----
Confidence            4789999999999999986 4566543 3357999999999999999999999999  88888899999984322     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCceeee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .|.++                              +|..|| ..+|+|+..|.+.+||++.++++.
T Consensus       246 ~Vtsl------------------------------SFrtDG~p~las~~~~G~m~~wDLe~kkl~~  281 (910)
T KOG1539|consen  246 RVTSL------------------------------SFRTDGNPLLASGRSNGDMAFWDLEKKKLIN  281 (910)
T ss_pred             ceeEE------------------------------EeccCCCeeEEeccCCceEEEEEcCCCeeee
Confidence            46676                              999999 678999999999999999988764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.29  E-value=4.6e-11  Score=90.71  Aligned_cols=139  Identities=11%  Similarity=0.171  Sum_probs=104.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++|+.|.+-.+||+.+++ +++.+ .+|....+-++-+|..+.+++++.|-+.++|||.. .-..+..|+||.......
T Consensus       287 ~vTaSWDRTAnlwDVEtge-~v~~L-tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~  363 (481)
T KOG0300|consen  287 MVTASWDRTANLWDVETGE-VVNIL-TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-AIQSVAVFQGHTDTVTSV  363 (481)
T ss_pred             eeeeeccccceeeeeccCc-eeccc-cCcchhccccccCCcceEEEEeccCceeEeccchh-hcceeeeecccccceeEE
Confidence            5789999999999999996 45544 45666788888999999999999999999966642 245667899998864333


Q ss_pred             eeccceeeeecCCCcceeee---eeeeeeeee---eceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           81 SVISFTSILAGDAPKYSSFY---KVKRLHLFV---KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      ..+..+.+.+|+||.....|   ++......+   ...++++.+.-++.+|---.+..|+++|+...+
T Consensus       364 vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  364 VFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             EEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence            33444678888888544434   444444444   556788999888899998888899999986544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.29  E-value=9.7e-12  Score=97.42  Aligned_cols=108  Identities=17%  Similarity=0.221  Sum_probs=85.1

Q ss_pred             eEeecCCeEEEEECCCCccceeEecC----------------CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCc
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINS----------------PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQS   65 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~----------------~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~   65 (147)
                      .+++.||+|.=|++-+++.....+..                .|...+.++|+||||++||+|+.|..|.|  ||.++.+
T Consensus       158 fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~I--w~~~t~e  235 (479)
T KOG0299|consen  158 FSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQI--WDCDTLE  235 (479)
T ss_pred             eecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEE--ecCcccc
Confidence            57888999999999888632111111                23346899999999999999999999999  7777788


Q ss_pred             ceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           66 KNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        66 ~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .++.|++|+.     .|.++                              +|--.-..|.+++.|++|++|+++....+.
T Consensus       236 hv~~~~ghr~-----~V~~L------------------------------~fr~gt~~lys~s~Drsvkvw~~~~~s~ve  280 (479)
T KOG0299|consen  236 HVKVFKGHRG-----AVSSL------------------------------AFRKGTSELYSASADRSVKVWSIDQLSYVE  280 (479)
T ss_pred             hhhccccccc-----ceeee------------------------------eeecCccceeeeecCCceEEEehhHhHHHH
Confidence            8889999997     36666                              887766789999999999999998765543


Q ss_pred             c
Q 032092          146 V  146 (147)
Q Consensus       146 ~  146 (147)
                      +
T Consensus       281 t  281 (479)
T KOG0299|consen  281 T  281 (479)
T ss_pred             H
Confidence            3

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=3.4e-11  Score=87.85  Aligned_cols=101  Identities=16%  Similarity=0.185  Sum_probs=83.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC-----CC-CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS-----PL-KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~-----~~-~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~   74 (147)
                      +++|+.|.+|+.||+|-... +.++..     .. ...|.++++.|.|+.|++|-.|....+  +|++-+++++.|..|.
T Consensus       197 ~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l--ydirg~r~iq~f~phs  273 (350)
T KOG0641|consen  197 FASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML--YDIRGGRMIQRFHPHS  273 (350)
T ss_pred             EEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE--EEeeCCceeeeeCCCc
Confidence            47899999999999997643 333321     11 135889999999999999999999999  8999899999997776


Q ss_pred             CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      ..     +.++                              -|+|.-.++.||+.|.+|++=|++
T Consensus       274 ad-----ir~v------------------------------rfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  274 AD-----IRCV------------------------------RFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             cc-----eeEE------------------------------EeCCCceEEEEecccceEEEeecc
Confidence            53     5555                              999999999999999999999985

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.28  E-value=6.7e-13  Score=102.83  Aligned_cols=143  Identities=13%  Similarity=0.189  Sum_probs=95.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.|..|++|++...+........+...+|+++.|.++++.+++.+.|+.+++  |+..+.+...+|.+|+.+..+.
T Consensus       190 latgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~--Wnvd~~r~~~TLsGHtdkVt~a  267 (459)
T KOG0288|consen  190 LATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL--WNVDSLRLRHTLSGHTDKVTAA  267 (459)
T ss_pred             hhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee--eeccchhhhhhhcccccceeee
Confidence            67899999999999987653222222223357999999999999999999999999  6666778888999998863211


Q ss_pred             --eeccceeeeecCCCcceeeeeeee--eee-eeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 --SVISFTSILAGDAPKYSSFYKVKR--LHL-FVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 --~v~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                        .... ..+.+|+.+.....|++.+  ... .+++-.-....-....+++|-.|++|++||.++..+.++
T Consensus       268 k~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~s  337 (459)
T KOG0288|consen  268 KFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRS  337 (459)
T ss_pred             hhhccc-cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeE
Confidence              1111 1256677774433333322  111 111111123344457789999999999999999887654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.28  E-value=2.3e-11  Score=89.91  Aligned_cols=103  Identities=15%  Similarity=0.146  Sum_probs=77.6

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      +..|+|.|-....-+ |+..+. +|...-.||+|+|+|++||+|+.|-.+.|  ||+.+---...+.-     +.+||..
T Consensus       166 ~GlG~v~ILsypsLk-pv~si~-AH~snCicI~f~p~GryfA~GsADAlvSL--WD~~ELiC~R~isR-----ldwpVRT  236 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLK-PVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSL--WDVDELICERCISR-----LDWPVRT  236 (313)
T ss_pred             cCCceEEEEeccccc-cccccc-cCCcceEEEEECCCCceEeeccccceeec--cChhHhhhheeecc-----ccCceEE
Confidence            445788887777653 555554 34334567889999999999999999999  77653222233322     2367777


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +                              +||.||++||+|+.|-.|-|=++++|..+++
T Consensus       237 l------------------------------SFS~dg~~lASaSEDh~IDIA~vetGd~~~e  268 (313)
T KOG1407|consen  237 L------------------------------SFSHDGRMLASASEDHFIDIAEVETGDRVWE  268 (313)
T ss_pred             E------------------------------EeccCcceeeccCccceEEeEecccCCeEEE
Confidence            7                              9999999999999999999999999988764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.27  E-value=1.6e-11  Score=97.57  Aligned_cols=136  Identities=18%  Similarity=0.242  Sum_probs=93.2

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC----c
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG----S   77 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~----~   77 (147)
                      .+|+.||.|.|||++++. .+..+. +|...+.||.+++||..|.+|+.|++++.  ||.++++.+..   |.-.    .
T Consensus       525 FsccsdGnI~vwDLhnq~-~Vrqfq-GhtDGascIdis~dGtklWTGGlDntvRc--WDlregrqlqq---hdF~SQIfS  597 (705)
T KOG0639|consen  525 FSCCSDGNIAVWDLHNQT-LVRQFQ-GHTDGASCIDISKDGTKLWTGGLDNTVRC--WDLREGRQLQQ---HDFSSQIFS  597 (705)
T ss_pred             eeeccCCcEEEEEcccce-eeeccc-CCCCCceeEEecCCCceeecCCCccceee--hhhhhhhhhhh---hhhhhhhee
Confidence            468899999999999974 455554 34456899999999999999999999999  88888765432   2211    1


Q ss_pred             eEEeeccceeeeecCCC-cceeeeeeee----eeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           78 ETCSVISFTSILAGDAP-KYSSFYKVKR----LHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      ..+..+.. -++.|.+. .+++..--+.    ++++-.=.+++.|.+-|++|++-|.|..+..|-+--|..++
T Consensus       598 Lg~cP~~d-WlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF  669 (705)
T KOG0639|consen  598 LGYCPTGD-WLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  669 (705)
T ss_pred             cccCCCcc-ceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence            11122332 24455555 4444442221    12222334678999999999999999999999875554443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.27  E-value=2e-11  Score=93.91  Aligned_cols=103  Identities=16%  Similarity=0.249  Sum_probs=75.1

Q ss_pred             CeEeecCCeEEEEECCCCcccee--EecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcce--eEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFK--RINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKN--FTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~--~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~--~~~~~h~~   75 (147)
                      |++|.--+.|++|-..++.=.+.  .+. .|...|-.|+|||. ...|++||.||+|+|  ||+|.+...  ...+.|..
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrI--WDiRs~~~~~~~~~kAh~s  303 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRI--WDIRSGPKKAAVSTKAHNS  303 (440)
T ss_pred             cccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEE--EEecCCCccceeEeeccCC
Confidence            35555667899999888641111  111 35567999999997 458999999999999  788876332  22245543


Q ss_pred             CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                           .||-+                              +|+..-.+||+|+.||+++|||++..
T Consensus       304 -----DVNVI------------------------------SWnr~~~lLasG~DdGt~~iwDLR~~  334 (440)
T KOG0302|consen  304 -----DVNVI------------------------------SWNRREPLLASGGDDGTLSIWDLRQF  334 (440)
T ss_pred             -----ceeeE------------------------------EccCCcceeeecCCCceEEEEEhhhc
Confidence                 35555                              99998889999999999999999764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=9.1e-11  Score=89.33  Aligned_cols=136  Identities=13%  Similarity=0.150  Sum_probs=83.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc--CCCEEEEEeeCCeEEEEeecCCCCc--ceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP--DQQGFWVGSIEGRVGVHHLDDSQQS--KNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp--dg~~l~~g~~dg~i~i~~~d~~~~~--~~~~~~~h~~~   76 (147)
                      +|++...|.|+|||..+++. ...+.. +...++.+.|..  .+..+.+++.||+|++  ||+|...  ....++.|...
T Consensus        43 vav~lSngsv~lyd~~tg~~-l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~--wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   43 VAVSLSNGSVRLYDKGTGQL-LEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRL--WDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             EEEEecCCeEEEEeccchhh-hheecC-CCCcccceEEecCCCCCeeEEeccCCeEEE--EEeecchhhhheeccCCCCC
Confidence            57889999999999999764 333332 223466777766  3678999999999999  6666533  33344455422


Q ss_pred             c-eEEeeccc-eeeeec-----CCCcc--eeeeeeeeeee-----eeeceEEEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092           77 S-ETCSVISF-TSILAG-----DAPKY--SSFYKVKRLHL-----FVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        77 ~-~~~~v~~~-~~~~~~-----~~~~~--~~~~~~~~~~~-----~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~  140 (147)
                      . .++..+.- -++..|     +++.+  +.++.-.+...     |....+.+.|||.. ++|+|||.||-|.|+|++.
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            1 12222211 112222     22221  22222223222     23333689999976 8999999999999999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.26  E-value=1.6e-11  Score=92.00  Aligned_cols=100  Identities=21%  Similarity=0.219  Sum_probs=79.4

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCC-EEEEEeeCCeEEEEeecCCC-CcceeEEEeccCCceEE
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSETC   80 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~~~~~   80 (147)
                      ....|++++-||+|++++ ...++.+|...|++|.|+|+.+ .|++|+.||.|+|  ||.|. ..+++++.+|..-    
T Consensus       188 ~tt~d~tl~~~D~RT~~~-~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvri--WD~R~tk~pv~el~~HsHW----  260 (370)
T KOG1007|consen  188 ATTSDSTLQFWDLRTMKK-NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRI--WDTRKTKFPVQELPGHSHW----  260 (370)
T ss_pred             EEeCCCcEEEEEccchhh-hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEE--EeccCCCccccccCCCceE----
Confidence            346789999999999865 3456666766799999999966 5789999999999  88875 3456677777642    


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~  140 (147)
                       +.++                              -|+|.. ++++|||+|..|.+|.+.+
T Consensus       261 -vW~V------------------------------Rfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  261 -VWAV------------------------------RFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             -EEEE------------------------------EecCccceEEEecCCCceeEEEeccc
Confidence             4444                              899976 8999999999999999754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.24  E-value=5.8e-11  Score=96.53  Aligned_cols=101  Identities=18%  Similarity=0.245  Sum_probs=85.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++|+..+.+++||-++.++. ..+. +|...|++|-.++||++++++++||+|++  ||+..++-+.++..|+..    
T Consensus       186 ivsGgtek~lr~wDprt~~ki-mkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrl--WdLgqQrCl~T~~vH~e~----  257 (735)
T KOG0308|consen  186 IVSGGTEKDLRLWDPRTCKKI-MKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRL--WDLGQQRCLATYIVHKEG----  257 (735)
T ss_pred             EEecCcccceEEeccccccce-eeee-ccccceEEEEEcCCCCeEeecCCCceEEe--eeccccceeeeEEeccCc----
Confidence            477889999999999998764 3344 56677999999999999999999999999  888888899999989863    


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                       +.++                              .-+|+-..+.+|+.||.|..=|+.+
T Consensus       258 -VWaL------------------------------~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  258 -VWAL------------------------------QSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             -eEEE------------------------------eeCCCcceEEecCCCCcEEecccCC
Confidence             4454                              6677778999999999998888776

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.24  E-value=8.2e-12  Score=95.73  Aligned_cols=103  Identities=17%  Similarity=0.267  Sum_probs=78.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++|++|-.++.||++..+.|++... .|...|.++.|||.|+-|++||-|.+|+|  +..+.++.--.+  |+...  .
T Consensus       244 F~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdfsptG~EfvsgsyDksIRI--f~~~~~~SRdiY--htkRM--q  316 (433)
T KOG0268|consen  244 FVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVMDVDFSPTGQEFVSGSYDKSIRI--FPVNHGHSRDIY--HTKRM--Q  316 (433)
T ss_pred             eeeccccccceehhhhhhcccchhhc-ccceeEEEeccCCCcchhccccccceEEE--eecCCCcchhhh--hHhhh--h
Confidence            36889999999999999877765443 34457999999999999999999999999  766654432222  22110  0


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .|.+                              +.||.|.+++.+||.|+.|++|...-
T Consensus       317 ~V~~------------------------------Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  317 HVFC------------------------------VKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             eeeE------------------------------EEEeccccEEEecCCCcceeeeecch
Confidence            1223                              39999999999999999999998753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.21  E-value=1e-10  Score=93.01  Aligned_cols=140  Identities=14%  Similarity=0.128  Sum_probs=99.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc---
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS---   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~---   77 (147)
                      +++|+..+.|+|||++.  +.+++....|+..|+++.++....+||+++..|.|.|  ..+.++....+|+...+..   
T Consensus        94 ~~sgG~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii--h~~~t~~~tt~f~~~sgqsvRl  169 (673)
T KOG4378|consen   94 EISGGQSGCVKIWDLRA--KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII--HGTKTKQKTTTFTIDSGQSVRL  169 (673)
T ss_pred             eeccCcCceeeehhhHH--HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEE--EecccCccccceecCCCCeEEE
Confidence            46788999999999995  3455554456678999999999999999999999999  6777666666665322221   


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeee--eee-eeceE----EEEEecCC-CeEEEeCCCCcEEEeecCCceee
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRL--HLF-VKSHV----IVLFVQIH-HTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~----~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      ..|....--++..-+|+++..+|+....  ..+ ..+|.    .++|+|.+ .+|++-|.|++|.+||...++..
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~  244 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST  244 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence            1233333334555566666666655432  222 25564    48999977 88999999999999999876543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.18  E-value=3.6e-10  Score=95.79  Aligned_cols=139  Identities=9%  Similarity=0.078  Sum_probs=94.7

Q ss_pred             CeEeecCCeEEEEECCC------C-----cc------ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092            1 MVVGTADRNLVVFNLQN------P-----QT------EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~------~-----~~------~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~   63 (147)
                      ||+|++|+.|.||+-..      +     .+      .+..+ ..|...|..++|+|++.+||+++.|++|.|  ||.++
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVii--wn~~t  160 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVII--WNAKT  160 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEE--Ecccc
Confidence            68999999999999883      1     11      11222 246667999999999999999999999999  88888


Q ss_pred             CcceeEEEeccCC--ceEEeeccceeeeecCCCcceeeee----ee-eeeeee------eceEEEEEecCCCeEEEeCC-
Q 032092           64 QSKNFTFKCHRDG--SETCSVISFTSILAGDAPKYSSFYK----VK-RLHLFV------KSHVIVLFVQIHHTFATAGS-  129 (147)
Q Consensus        64 ~~~~~~~~~h~~~--~~~~~v~~~~~~~~~~~~~~~~~~~----~~-~~~~~~------~~~~~~~fspdg~~latg~~-  129 (147)
                      .+.+.++.+|..-  +..+.+...++-+-++|-.+.+|+-    ++ ++...+      .-+.+++|||||++||+..+ 
T Consensus       161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence            8888999999764  3334333332233355556666552    22 222222      12357999999999999855 


Q ss_pred             C---CcEEEeecCCce
Q 032092          130 D---GAFNFWDKDSKQ  142 (147)
Q Consensus       130 D---g~i~iWd~~~~~  142 (147)
                      +   .++.|-+-++-+
T Consensus       241 n~~~~~~~IieR~tWk  256 (942)
T KOG0973|consen  241 NGGKSTIAIIERGTWK  256 (942)
T ss_pred             cCCcceeEEEecCCce
Confidence            2   256676654433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=2e-09  Score=78.64  Aligned_cols=145  Identities=11%  Similarity=0.109  Sum_probs=98.1

Q ss_pred             CeEeecCCeEEEEECCCC--ccceeEec-CCCCcceEEEEEccC----CCEEEEEe-eCCeEEEEeecCCCCcceeEEEe
Q 032092            1 MVVGTADRNLVVFNLQNP--QTEFKRIN-SPLKYQMRCVAAFPD----QQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~--~~~~~~~~-~~~~~~i~~la~spd----g~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      ||+|+.|++|++.-.+..  +..-+.++ ..|...|+.++|-.+    |..|++++ .|..|++  -|-.+|+....+.+
T Consensus       104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~--tdc~~g~~~~a~sg  181 (350)
T KOG0641|consen  104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI--TDCGRGQGFHALSG  181 (350)
T ss_pred             EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE--eecCCCCcceeecC
Confidence            689999999998655433  21111111 135567999999654    34555443 3445554  77778888888888


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeee--eeeeee-----------eceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVK--RLHLFV-----------KSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      |+.-....-..+-.++++|+.+....||+|.  ..+..+           .+..+++.-|.|++|++|-.|...-+||++
T Consensus       182 htghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir  261 (350)
T KOG0641|consen  182 HTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR  261 (350)
T ss_pred             CcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence            8754333223344688999999776677653  112221           223468999999999999999999999999


Q ss_pred             CceeeecC
Q 032092          140 SKQRLKVF  147 (147)
Q Consensus       140 ~~~~~~~~  147 (147)
                      .++.++.|
T Consensus       262 g~r~iq~f  269 (350)
T KOG0641|consen  262 GGRMIQRF  269 (350)
T ss_pred             CCceeeee
Confidence            99988765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=6.2e-10  Score=87.63  Aligned_cols=144  Identities=14%  Similarity=0.154  Sum_probs=93.5

Q ss_pred             CeEeecCCeEEEEECCCCccc-eeEecCCCCcceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCcc--eeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTE-FKRINSPLKYQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSK--NFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~-~~~~~~~~~~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~--~~~~~~h~~~   76 (147)
                      |++|+-||+++||-+.....+ ++.+. -.++||.+.+|.|+|. .+++++--...+.  ||..+.+.  +....++...
T Consensus       228 llvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ys--yDle~ak~~k~~~~~g~e~~  304 (514)
T KOG2055|consen  228 LLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYS--YDLETAKVTKLKPPYGVEEK  304 (514)
T ss_pred             EEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEE--eeccccccccccCCCCcccc
Confidence            578999999999999765333 12221 2357999999999999 7888887777777  66554332  2223333321


Q ss_pred             c-eEEeeccc--eeeeecCCCcceeeeeeeee---eeeeeceE-EEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           77 S-ETCSVISF--TSILAGDAPKYSSFYKVKRL---HLFVKSHV-IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        77 ~-~~~~v~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      . +.+.|...  .+.+.|.+..+.++.-....   ...++|.+ .+.|+.|++.|..++++|.|.+||++..++++.|
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf  382 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF  382 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence            1 22323222  23344555544444322111   22345654 4799999999999999999999999999999876

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.16  E-value=3.5e-10  Score=91.87  Aligned_cols=139  Identities=11%  Similarity=0.092  Sum_probs=88.7

Q ss_pred             CeEeec-CCeEEEEECCCCccceeE-------ecCCC--CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC--Cccee
Q 032092            1 MVVGTA-DRNLVVFNLQNPQTEFKR-------INSPL--KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ--QSKNF   68 (147)
Q Consensus         1 l~~gs~-dg~v~iwdi~~~~~~~~~-------~~~~~--~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~--~~~~~   68 (147)
                      ||+++. |+.|++|||++.......       +..+.  ...+.++....-|.+|.+.+.|++|++  |+.++  ..+..
T Consensus       232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~--ynm~s~s~sP~~  309 (720)
T KOG0321|consen  232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF--YNMRSLSISPVA  309 (720)
T ss_pred             eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE--EeccccCcCchh
Confidence            577777 999999999987542211       10010  123556666666898888888999999  56553  34455


Q ss_pred             EEEeccCCc----eEEeeccceeeeecCCC--cceeeeeeeeeeeeeece----EEEEEecCC-CeEEEeCCCCcEEEee
Q 032092           69 TFKCHRDGS----ETCSVISFTSILAGDAP--KYSSFYKVKRLHLFVKSH----VIVLFVQIH-HTFATAGSDGAFNFWD  137 (147)
Q Consensus        69 ~~~~h~~~~----~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~fspdg-~~latg~~Dg~i~iWd  137 (147)
                      .|.+|.+..    ......+..+++++++.  .+|.....+..+..+.||    +.+.|.|.. .-+||++.|-.++||+
T Consensus       310 ~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  310 EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence            555554431    23344555555555555  345555555555566676    358999865 5678889999999999


Q ss_pred             cCCc
Q 032092          138 KDSK  141 (147)
Q Consensus       138 ~~~~  141 (147)
                      +..+
T Consensus       390 l~~~  393 (720)
T KOG0321|consen  390 LSNG  393 (720)
T ss_pred             ccCc
Confidence            8543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=3.7e-10  Score=92.05  Aligned_cols=113  Identities=23%  Similarity=0.302  Sum_probs=77.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEec--cCC-c
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH--RDG-S   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h--~~~-~   77 (147)
                      |++|++||.+..+++..++...++.....+..|.+|+|+|++..++.|+.||.|++  ||...+...+.....  +.. .
T Consensus       125 l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri--wd~~~~~t~~~~~~~~d~l~k~  202 (691)
T KOG2048|consen  125 LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI--WDVKSGQTLHIITMQLDRLSKR  202 (691)
T ss_pred             EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE--EEcCCCceEEEeeecccccccC
Confidence            57899999888888877654333332233456999999999999999999999999  787766554421110  000 0


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ...-+.++                              .|-.| ..||+|.+-|+|.+||.+.+.++..
T Consensus       203 ~~~iVWSv------------------------------~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS  240 (691)
T KOG2048|consen  203 EPTIVWSV------------------------------LFLRD-STIASGDSAGTVTFWDSIFGTLIQS  240 (691)
T ss_pred             CceEEEEE------------------------------EEeec-CcEEEecCCceEEEEcccCcchhhh
Confidence            11112222                              44445 4689999999999999998877654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.15  E-value=4.1e-11  Score=88.76  Aligned_cols=99  Identities=20%  Similarity=0.282  Sum_probs=76.2

Q ss_pred             eEeecCCeEEEEECCCC--cccee-EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            2 VVGTADRNLVVFNLQNP--QTEFK-RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~--~~~~~-~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      ++|+.+.++..|+++..  ..++. .+.. ..-.+.-+.+-||++.+|++++||+|+++.|  ++.+++..++-|+.   
T Consensus       221 isgga~dkl~~~Sl~~s~gslq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVysw--rtl~pLAVLkyHsa---  294 (323)
T KOG0322|consen  221 ISGGADDKLVMYSLNHSTGSLQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSW--RTLNPLAVLKYHSA---  294 (323)
T ss_pred             cCCCccccceeeeeccccCcccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEe--ccCCchhhhhhhhc---
Confidence            45677788888988754  21111 1110 1123788899999999999999999999666  56778888888885   


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                        .++++                              +|+||-+.+|+||.|+.|-+|++
T Consensus       295 --gvn~v------------------------------Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  295 --GVNAV------------------------------AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             --ceeEE------------------------------EeCCCCchhhhccCCceEEeeec
Confidence              47777                              99999999999999999999985

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=1.3e-10  Score=93.96  Aligned_cols=129  Identities=14%  Similarity=0.249  Sum_probs=88.9

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe-ec
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS-VI   83 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~-v~   83 (147)
                      +....|+|||+..++ +++.+.. ....|.+++++|.|+.|++|+.|+.+-.+|.|.. .++.++++-|......-. --
T Consensus       584 aTq~~vRiYdL~kqe-lvKkL~t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~  660 (733)
T KOG0650|consen  584 ATQRSVRIYDLSKQE-LVKKLLT-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHK  660 (733)
T ss_pred             EeccceEEEehhHHH-HHHHHhc-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhcc
Confidence            455789999999864 4444433 2347999999999999999999999987566654 355556666765321100 12


Q ss_pred             cceeeeecCCC-cceeee-----ee-----eeeeeeeece--------EEEEEecCCCeEEEeCCCCcEEEe
Q 032092           84 SFTSILAGDAP-KYSSFY-----KV-----KRLHLFVKSH--------VIVLFVQIHHTFATAGSDGAFNFW  136 (147)
Q Consensus        84 ~~~~~~~~~~~-~~~~~~-----~~-----~~~~~~~~~~--------~~~~fspdg~~latg~~Dg~i~iW  136 (147)
                      ...+++++++| .+.+++     +|     .-.+..+.||        +.+.|||...+|.|+|+||+|++|
T Consensus       661 ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  661 RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            34567777776 455444     22     1113345666        357899999999999999999998

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=3e-10  Score=83.52  Aligned_cols=105  Identities=12%  Similarity=0.239  Sum_probs=76.1

Q ss_pred             ecCCeEEEEECCCCcccee-----EecCCC------CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092            5 TADRNLVVFNLQNPQTEFK-----RINSPL------KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH   73 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~-----~~~~~~------~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h   73 (147)
                      +.||.|+=|-.++..+...     ....|.      --.|++|-..|..+.++.++.|+.++-  ||+.+|+...+|+||
T Consensus        78 ~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~--~dlE~G~i~r~~rGH  155 (325)
T KOG0649|consen   78 GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQ--VDLEDGRIQREYRGH  155 (325)
T ss_pred             ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEE--EEecCCEEEEEEcCC
Confidence            4569999998877643111     001111      124899999999888887778999988  888889999999999


Q ss_pred             cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ++.     +.++                              +--.....+.||+.||++|+||.++++++++
T Consensus       156 tDY-----vH~v------------------------------v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~  193 (325)
T KOG0649|consen  156 TDY-----VHSV------------------------------VGRNANGQILSGAEDGTVRVWDTKTQKHVSM  193 (325)
T ss_pred             cce-----eeee------------------------------eecccCcceeecCCCccEEEEeccccceeEE
Confidence            974     3332                              2212224589999999999999999988764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.15  E-value=4.4e-10  Score=84.34  Aligned_cols=138  Identities=10%  Similarity=0.084  Sum_probs=85.2

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcc-eeEEEecc-CC
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSK-NFTFKCHR-DG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~-~~~~~~h~-~~   76 (147)
                      |.+.|-|.++.|||+.++.. -+++-..+|..+|..|+|...+ +.||+.+.||.+++  ||+|.-.. ...+.... ..
T Consensus       166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRm--FDLR~leHSTIIYE~p~~~~  243 (364)
T KOG0290|consen  166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRM--FDLRSLEHSTIIYEDPSPST  243 (364)
T ss_pred             eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEE--EEecccccceEEecCCCCCC
Confidence            45778899999999999731 1222223577789999999875 57999999999999  88875322 11222111 00


Q ss_pred             c---e---EEeeccceeeeecCCCcc-eeeeeeeeeeeeeece----EEEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092           77 S---E---TCSVISFTSILAGDAPKY-SSFYKVKRLHLFVKSH----VIVLFVQIH-HTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        77 ~---~---~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~fspdg-~~latg~~Dg~i~iWd~~~  140 (147)
                      .   .   ...++-+..+...+...+ -..+.......-+.+|    +.++|.|.. ..|+|||.|..+-|||+++
T Consensus       244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            0   0   011222222333332221 1122222223445666    569999965 8999999999999999975

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.14  E-value=6.3e-10  Score=84.14  Aligned_cols=102  Identities=12%  Similarity=0.176  Sum_probs=79.3

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCe-EEEEeecCCCCcceeEEEeccCCceEEeec
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGR-VGVHHLDDSQQSKNFTFKCHRDGSETCSVI   83 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~-i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~   83 (147)
                      -..|.|+|-|+..-+.--..+-.+|+..|.|++.+-+|..+|++|..|+ |||  ||+.+|+.+++++--....   .+.
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI--Fdt~~g~~l~E~RRG~d~A---~iy  230 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI--FDTEDGTLLQELRRGVDRA---DIY  230 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE--EEcCCCcEeeeeecCCchh---eEE
Confidence            3468999999987543001222367788999999999999999999999 677  9999999998885211111   244


Q ss_pred             cceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           84 SFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      .+                              +|||+..+||.+|..|+++|+.++..
T Consensus       231 ~i------------------------------aFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  231 CI------------------------------AFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EE------------------------------EeCCCccEEEEEcCCCeEEEEEeecC
Confidence            45                              99999999999999999999998763

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.11  E-value=8.6e-10  Score=86.71  Aligned_cols=113  Identities=10%  Similarity=0.125  Sum_probs=80.9

Q ss_pred             CeEeecCCeEEEEECCCCcccee-Ee-cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC----CCcceeEEEecc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFK-RI-NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS----QQSKNFTFKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~-~~-~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~----~~~~~~~~~~h~   74 (147)
                      ||||+.|++.+|||+|+...... .+ .-+|+.+|.+..|||.+-.|++-+.|..|+|  ||..    ...+..++. |.
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv--~dss~~sa~~~p~~~I~-Hn  414 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV--FDSSCISAKDEPLGTIP-HN  414 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE--eecccccccCCccceee-cc
Confidence            68999999999999998532110 12 2256778999999999888999999999999  7763    223333333 43


Q ss_pred             CCc-eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           75 DGS-ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        75 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +.. .-...-                              ..+|.|+-++++.|-.-..|-|+|.+.++.+.+
T Consensus       415 ~~t~RwlT~f------------------------------KA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  415 NRTGRWLTPF------------------------------KAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             Ccccccccch------------------------------hheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence            321 101111                              139999999999999999999999988886654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.11  E-value=8.2e-11  Score=92.67  Aligned_cols=107  Identities=18%  Similarity=0.237  Sum_probs=90.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++++..|-++--|+.+|+. +..+... ...+..|+-+|-.-.+-+|...|+|.+  |.+....++..+.||+.     
T Consensus       224 L~~~~~~G~L~Y~DVS~Gkl-Va~~~t~-~G~~~vm~qNP~NaVih~GhsnGtVSl--WSP~skePLvKiLcH~g-----  294 (545)
T KOG1272|consen  224 LVAASEAGFLKYQDVSTGKL-VASIRTG-AGRTDVMKQNPYNAVIHLGHSNGTVSL--WSPNSKEPLVKILCHRG-----  294 (545)
T ss_pred             eeecccCCceEEEeechhhh-hHHHHcc-CCccchhhcCCccceEEEcCCCceEEe--cCCCCcchHHHHHhcCC-----
Confidence            67889999999999999964 4444322 246788999998888999999999999  89888888888889986     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +|.++                              ++.|+|+++||.|.|..++|||++....+++
T Consensus       295 ~V~si------------------------------Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t  330 (545)
T KOG1272|consen  295 PVSSI------------------------------AVDRGGRYMATTGLDRKVKIWDLRNFYQLHT  330 (545)
T ss_pred             CcceE------------------------------EECCCCcEEeecccccceeEeeeccccccce
Confidence            58887                              9999999999999999999999998766654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=2.2e-09  Score=81.10  Aligned_cols=105  Identities=16%  Similarity=0.217  Sum_probs=70.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC--CCCcceEEEEEc-cC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS--PLKYQMRCVAAF-PD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~--~~~~~i~~la~s-pd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      ||+|+.|++|+|||.+...-......+  .|...|-.|.|- |. |+.+|+++.|+++.|  |.-.    ...+.+|...
T Consensus        28 mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i--WEE~----~~~~~~~~~~  101 (361)
T KOG2445|consen   28 MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI--WEEQ----EKSEEAHGRR  101 (361)
T ss_pred             eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee--eeec----ccccccccce
Confidence            689999999999998765433332211  355678888884 44 999999999999999  6432    1112222210


Q ss_pred             -ce-------EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC--CCeEEEeCCCCcEEEeecCCc
Q 032092           77 -SE-------TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI--HHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        77 -~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd--g~~latg~~Dg~i~iWd~~~~  141 (147)
                       ..       ...+.+                              +.|.|.  |-.||+++.||.+|||++-+-
T Consensus       102 Wv~~ttl~DsrssV~D------------------------------V~FaP~hlGLklA~~~aDG~lRIYEA~dp  146 (361)
T KOG2445|consen  102 WVRRTTLVDSRSSVTD------------------------------VKFAPKHLGLKLAAASADGILRIYEAPDP  146 (361)
T ss_pred             eEEEEEeecCCcceeE------------------------------EEecchhcceEEEEeccCcEEEEEecCCc
Confidence             00       012223                              499996  578999999999999997553

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.08  E-value=1.1e-09  Score=82.50  Aligned_cols=135  Identities=11%  Similarity=0.111  Sum_probs=83.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      |++++.||.+++||+...+.. ..+  .++.|+.+.+|.+ ...+++|+.||.|+.  +|+.++.. ..+..|.....  
T Consensus        28 LLvssWDgslrlYdv~~~~l~-~~~--~~~~plL~c~F~d-~~~~~~G~~dg~vr~--~Dln~~~~-~~igth~~~i~ci  100 (323)
T KOG1036|consen   28 LLVSSWDGSLRLYDVPANSLK-LKF--KHGAPLLDCAFAD-ESTIVTGGLDGQVRR--YDLNTGNE-DQIGTHDEGIRCI  100 (323)
T ss_pred             EEEEeccCcEEEEeccchhhh-hhe--ecCCceeeeeccC-CceEEEeccCceEEE--EEecCCcc-eeeccCCCceEEE
Confidence            578899999999999987432 222  2456899999987 557889999999999  55544433 22334544321  


Q ss_pred             EEeeccceeeeecC-CCcceeeeeee-eeeeeeeceEE-EEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           79 TCSVISFTSILAGD-APKYSSFYKVK-RLHLFVKSHVI-VLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      ++. .....+++|+ |..++.+..-. .....+..-.. -+.+-.|+.|+.|..|..+.+||+++.+.
T Consensus       101 ~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen  101 EYS-YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             Eee-ccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence            222 1223444444 44555544321 12222211112 24455678899999999999999987543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.07  E-value=8.6e-10  Score=85.57  Aligned_cols=70  Identities=10%  Similarity=0.124  Sum_probs=59.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      |++++.|++|.|||+.+++..+. +.  |...|.++.|+.||.+|++.+.|..|+|  ||+++++.+..-.+|..
T Consensus       147 Llsag~Dn~v~iWnv~tgeali~-l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv--~dpr~~~~v~e~~~heG  216 (472)
T KOG0303|consen  147 LLSAGSDNTVSIWNVGTGEALIT-LD--HPDMVYSMSFNRDGSLLCTTCKDKKVRV--IDPRRGTVVSEGVAHEG  216 (472)
T ss_pred             HhhccCCceEEEEeccCCceeee-cC--CCCeEEEEEeccCCceeeeecccceeEE--EcCCCCcEeeecccccC
Confidence            57889999999999999976433 33  5567999999999999999999999999  99999988877767764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.07  E-value=5.3e-10  Score=91.51  Aligned_cols=112  Identities=13%  Similarity=0.086  Sum_probs=85.6

Q ss_pred             CCCcceEEEEEccCCCEEEEEeeCCe-----EEEEeecCCCCcceeEEEeccCCc--eEEeeccceeeeecCCCcceeee
Q 032092           28 PLKYQMRCVAAFPDQQGFWVGSIEGR-----VGVHHLDDSQQSKNFTFKCHRDGS--ETCSVISFTSILAGDAPKYSSFY  100 (147)
Q Consensus        28 ~~~~~i~~la~spdg~~l~~g~~dg~-----i~i~~~d~~~~~~~~~~~~h~~~~--~~~~v~~~~~~~~~~~~~~~~~~  100 (147)
                      +|.+.|.+++.+|+|+.+|+++....     |+|  |++.+-...+.+.+|....  ..++.+.-.++++|+|-.+.++.
T Consensus       523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~l--w~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~  600 (764)
T KOG1063|consen  523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRL--WNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE  600 (764)
T ss_pred             cCceeEEEEEecCCCCEEeehhhhCCccceEEEE--EeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence            45678999999999999999875443     666  8888777777888998753  46777776677778877665555


Q ss_pred             eeeee-----eeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092          101 KVKRL-----HLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus       101 ~~~~~-----~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      .-+..     -...++|.+    |+|+||+.+|||||.|++|++|...+.
T Consensus       601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            32221     113577864    899999999999999999999998876

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.07  E-value=8.1e-10  Score=91.18  Aligned_cols=102  Identities=15%  Similarity=0.195  Sum_probs=85.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC--CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS--PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~--~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      +++++.|++|+|||+.++++ ++.+..  .+++..-.+...|.|-|+|+...|.++.+  +|-.+|+.+.+..||..   
T Consensus       611 v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~--~Df~sgEcvA~m~GHsE---  684 (1080)
T KOG1408|consen  611 VVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF--VDFVSGECVAQMTGHSE---  684 (1080)
T ss_pred             EEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCccEEEEeecCCceEE--EEeccchhhhhhcCcch---
Confidence            47899999999999999975 344432  23345667888999999999999999999  77777888888889976   


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                        .|+.+                              .|.||-+.|++.++||.|.||.+-.
T Consensus       685 --~VTG~------------------------------kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  685 --AVTGV------------------------------KFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             --heeee------------------------------eecccchhheeecCCceEEEEECch
Confidence              46777                              9999999999999999999998743

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.05  E-value=6.2e-10  Score=87.49  Aligned_cols=99  Identities=22%  Similarity=0.240  Sum_probs=72.5

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC--Ccce--eEEEeccCCc
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ--QSKN--FTFKCHRDGS   77 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~--~~~~--~~~~~h~~~~   77 (147)
                      .|..=|...+||+|++......+. .|+..|++|+++|. ..+||+++.|++.+|  ||+|+  ++..  .....|+.  
T Consensus       296 ~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~~laT~s~D~T~kI--WD~R~l~~K~sp~lst~~Hrr--  370 (498)
T KOG4328|consen  296 FGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPWFLATASLDQTAKI--WDLRQLRGKASPFLSTLPHRR--  370 (498)
T ss_pred             EeecccceEEEEeecCCccchhhh-hhhcccceeecCCCCchheeecccCcceee--eehhhhcCCCCcceecccccc--
Confidence            444456789999999765333332 24447999999997 467999999999999  78775  2221  12223554  


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                         +|++.                              .|||++-.|+|-+.|..|+|||..
T Consensus       371 ---sV~sA------------------------------yFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  371 ---SVNSA------------------------------YFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ---eeeee------------------------------EEcCCCCceEeeccCCceEEeecc
Confidence               57777                              999988669999999999999983

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.02  E-value=4.2e-09  Score=84.00  Aligned_cols=98  Identities=19%  Similarity=0.291  Sum_probs=72.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ++|++.|+.++||+  .-+....++   ...+..|++|+|.| .+|+|+..|...+  +|..+...+ +  -|...   -
T Consensus       383 ~~T~gqdk~v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V--~d~e~~~lv-~--~~~d~---~  448 (626)
T KOG2106|consen  383 LLTCGQDKHVRLWN--DHKLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFV--LDTETQDLV-T--IHTDN---E  448 (626)
T ss_pred             eeeccCcceEEEcc--CCceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEE--EecccceeE-E--EEecC---C
Confidence            58999999999999  222222222   23578999999999 9999999999988  888763332 2  23321   1


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      +++.+                              .|+|||.+||.|+-|+.|+||-+....
T Consensus       449 ~ls~v------------------------------~ysp~G~~lAvgs~d~~iyiy~Vs~~g  480 (626)
T KOG2106|consen  449 QLSVV------------------------------RYSPDGAFLAVGSHDNHIYIYRVSANG  480 (626)
T ss_pred             ceEEE------------------------------EEcCCCCEEEEecCCCeEEEEEECCCC
Confidence            34444                              999999999999999999999886543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.02  E-value=8.3e-10  Score=89.77  Aligned_cols=104  Identities=18%  Similarity=0.214  Sum_probs=79.0

Q ss_pred             CeEeecCCeEEEEECCCCccc--eeEecC--CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE--EEecc
Q 032092            1 MVVGTADRNLVVFNLQNPQTE--FKRINS--PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT--FKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~--~~~~~~--~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~--~~~h~   74 (147)
                      |+++.+||.|.|+|.+..+-.  -.++..  .|...|..++|-|-...|++.+.|.++++  ||+.+.+....  +.||.
T Consensus        67 LavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~--Wdvk~s~l~G~~~~~GH~  144 (720)
T KOG0321|consen   67 LAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRP--WDVKTSRLVGGRLNLGHT  144 (720)
T ss_pred             EEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeee--eeeccceeecceeecccc
Confidence            688999999999999875311  001111  35567999999995567899999999999  67665555444  66776


Q ss_pred             CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092           75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~  141 (147)
                      .     .+-++                              +|.|+. ..|+||+.||.|.|||++-.
T Consensus       145 ~-----SvkS~------------------------------cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen  145 G-----SVKSE------------------------------CFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             c-----ccchh------------------------------hhccCCCcceeeccCCCcEEEEEEecc
Confidence            4     57777                              999977 78999999999999998654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=5.6e-10  Score=87.36  Aligned_cols=103  Identities=14%  Similarity=0.177  Sum_probs=76.7

Q ss_pred             CeEeecCCeEEEEECCCCcc--ceeEec-----------------CCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeec
Q 032092            1 MVVGTADRNLVVFNLQNPQT--EFKRIN-----------------SPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLD   60 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~--~~~~~~-----------------~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d   60 (147)
                      +|+|+-|..|.|||+.-...  |.-++-                 +.|...|.+|+|+.+ -+.||+|+.|.+|.+  ||
T Consensus       195 vAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l--WD  272 (463)
T KOG0270|consen  195 VAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL--WD  272 (463)
T ss_pred             EEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE--EE
Confidence            48899999999999864432  111110                 122233567777776 467999999999999  67


Q ss_pred             CCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecC
Q 032092           61 DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        61 ~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~  139 (147)
                      +.++++..++..|..     .|.++                              +|+|.. .+|++|+.|++|++.|.+
T Consensus       273 ~~~g~p~~s~~~~~k-----~Vq~l------------------------------~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  273 VDTGKPKSSITHHGK-----KVQTL------------------------------EWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             cCCCCcceehhhcCC-----ceeEE------------------------------EecCCCceEEEeccccceEEeeecc
Confidence            777888888876654     36666                              999975 899999999999999988


Q ss_pred             C
Q 032092          140 S  140 (147)
Q Consensus       140 ~  140 (147)
                      .
T Consensus       318 ~  318 (463)
T KOG0270|consen  318 D  318 (463)
T ss_pred             C
Confidence            4

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=2.4e-09  Score=84.33  Aligned_cols=138  Identities=11%  Similarity=0.034  Sum_probs=78.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC----CCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS----QQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~----~~~~~~~~~~h~~~   76 (147)
                      |++.+.+|.|.+||+++... .++........=+++|.|++|.+||+|+..|.|.|++.+..    +.+++.++-.-+..
T Consensus       359 l~~~~~~GeV~v~nl~~~~~-~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~  437 (514)
T KOG2055|consen  359 LLASGGTGEVYVWNLRQNSC-LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA  437 (514)
T ss_pred             EEEEcCCceEEEEecCCcce-EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence            35667889999999999854 44443322223478999999999999999999999433221    12333322111110


Q ss_pred             --ceEEeecccee-eee-cCCCcceeeeeeeeeeee-e------ece-EEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           77 --SETCSVISFTS-ILA-GDAPKYSSFYKVKRLHLF-V------KSH-VIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        77 --~~~~~v~~~~~-~~~-~~~~~~~~~~~~~~~~~~-~------~~~-~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                        ...+..++..+ +.+ .-.+..+..+-..-.+.. +      -+| ..++|||.|.+||-|..+|.+.+|.+.
T Consensus       438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence              01111111111 111 112223333211111111 1      223 358999999999999999999999763

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.00  E-value=8.2e-09  Score=78.08  Aligned_cols=102  Identities=22%  Similarity=0.317  Sum_probs=77.3

Q ss_pred             ecCCeEEEEECCC-CccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092            5 TADRNLVVFNLQN-PQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         5 s~dg~v~iwdi~~-~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v   82 (147)
                      ..|+.+++||+.. .. ....+. .+...++.++|+|+++.+++++. |+.+++  |+...+.....+.+|..     .+
T Consensus       131 ~~d~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~v  201 (466)
T COG2319         131 SLDGTVKLWDLSTPGK-LIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKL--WDLRTGKPLSTLAGHTD-----PV  201 (466)
T ss_pred             CCCccEEEEEecCCCe-EEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEE--EEcCCCceEEeeccCCC-----ce
Confidence            3489999999997 32 223333 34457899999999999988886 999999  77766666667766654     34


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCC-eEEEeCCCCcEEEeecCCceeee
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH-TFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~-~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      ..+                              +|+|+++ .+++++.|+.|++||...++.+.
T Consensus       202 ~~~------------------------------~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~  235 (466)
T COG2319         202 SSL------------------------------AFSPDGGLLIASGSSDGTIRLWDLSTGKLLR  235 (466)
T ss_pred             EEE------------------------------EEcCCcceEEEEecCCCcEEEEECCCCcEEe
Confidence            555                              9999997 66666999999999988766654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.99  E-value=6.9e-09  Score=79.00  Aligned_cols=138  Identities=17%  Similarity=0.200  Sum_probs=88.3

Q ss_pred             EeecCCeEEEEECCC-Ccc-cee-EecC---CCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092            3 VGTADRNLVVFNLQN-PQT-EFK-RINS---PLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~-~~~-~~~-~~~~---~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      -|+..+.|++||+.+ +.. ++. +...   ..+.-+.+++|+| +.+++|+|+--.++-|+.+|-  +.+++.+-+|..
T Consensus       174 faGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--~~pl~llggh~g  251 (406)
T KOG2919|consen  174 FAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--RRPLQLLGGHGG  251 (406)
T ss_pred             eecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC--CCceeeecccCC
Confidence            467788999999944 421 211 1111   1223478999999 467999999999999955554  578888888876


Q ss_pred             Cc--eEEeeccceeeeecCCC-c--ceeeeeeeeeeeeeece-------EEEEEecCCCeEEEeCCCCcEEEeecCC-ce
Q 032092           76 GS--ETCSVISFTSILAGDAP-K--YSSFYKVKRLHLFVKSH-------VIVLFVQIHHTFATAGSDGAFNFWDKDS-KQ  142 (147)
Q Consensus        76 ~~--~~~~v~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~-------~~~~fspdg~~latg~~Dg~i~iWd~~~-~~  142 (147)
                      ..  ..+....-.++++.+-+ .  +|..+....+++.+..|       +-+..-|++++||+|+.||.|++||+++ +.
T Consensus       252 GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  252 GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             CeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence            53  22333333344554444 2  23322222333333333       3457789999999999999999999987 44

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.96  E-value=8.4e-10  Score=88.38  Aligned_cols=77  Identities=16%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS  111 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (147)
                      .|+..+|||||++||+-+.||.++|+++|..  +.+..++.      +  ...+                          
T Consensus       292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--eLlg~mkS------Y--FGGL--------------------------  335 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--ELLGVMKS------Y--FGGL--------------------------  335 (636)
T ss_pred             cccceeEcCCCceEEEEecCceEEEeeccHH--HHHHHHHh------h--ccce--------------------------
Confidence            5788999999999999999999999777653  22211110      0  1111                          


Q ss_pred             eEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092          112 HVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus       112 ~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                       +=|+|||||++++|||.|.-|.||.+.+++.+-
T Consensus       336 -LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  336 -LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             -EEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence             113999999999999999999999999988763

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.94  E-value=4.1e-09  Score=86.21  Aligned_cols=103  Identities=17%  Similarity=0.243  Sum_probs=82.6

Q ss_pred             CeEeecCCeEEEEECCCCccc-e---eEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTE-F---KRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~-~---~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      ||+||.|..|+||-+..+-.. .   ..+-++.+..+.++.|+|..+.+...+..|+++|  ||+.+++....+.+|...
T Consensus        95 LAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i--~D~stqk~~~el~~h~d~  172 (1012)
T KOG1445|consen   95 LATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYI--TDISTQKTAVELSGHTDK  172 (1012)
T ss_pred             hhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEE--EEcccCceeecccCCchh
Confidence            689999999999999865221 1   0111223346889999999888888888899999  888889998888888763


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                           +-+.                              .|+.||.+||+++-|+.|+|+|-+.
T Consensus       173 -----vQSa------------------------------~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  173 -----VQSA------------------------------DWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             -----hhcc------------------------------ccccCCceEeeecCCcceEEeCCcc
Confidence                 5566                              9999999999999999999999764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.94  E-value=7e-08  Score=72.98  Aligned_cols=139  Identities=19%  Similarity=0.243  Sum_probs=90.4

Q ss_pred             eEeec-CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCccee-EEEeccCCc-
Q 032092            2 VVGTA-DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSKNF-TFKCHRDGS-   77 (147)
Q Consensus         2 ~~gs~-dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~~~-~~~~h~~~~-   77 (147)
                      ++++. |+.+++|++.... ....+. .+...+.+++++|++. .+++++.|+.|++  ||...+.... .+.+|.... 
T Consensus       171 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~--wd~~~~~~~~~~~~~~~~~~~  246 (466)
T COG2319         171 ASGSSLDGTIKLWDLRTGK-PLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRL--WDLSTGKLLRSTLSGHSDSVV  246 (466)
T ss_pred             EecCCCCCceEEEEcCCCc-eEEeec-cCCCceEEEEEcCCcceEEEEecCCCcEEE--EECCCCcEEeeecCCCCccee
Confidence            45554 9999999999853 333343 3556799999999998 4555599999999  5766555555 567776542 


Q ss_pred             eEEeeccceeeee-cCCCcceeeeee--eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           78 ETCSVISFTSILA-GDAPKYSSFYKV--KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        78 ~~~~v~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      ..+.... ..++. +.+..++++...  ........+|    ..+.|+|++..+++++.|+.+++||.++.....
T Consensus       247 ~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  320 (466)
T COG2319         247 SSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS  320 (466)
T ss_pred             EeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence            1233333 23334 444445554421  1211222333    457999988888889999999999988776543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.94  E-value=2.5e-08  Score=78.63  Aligned_cols=104  Identities=16%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v   82 (147)
                      +-..+|.|.+.|..+.+ .+.++..... .--.++++|||+++.+.+.||.|.+  +|+.+++.+.+++.-.      ..
T Consensus        11 ~~~~~~~v~viD~~t~~-~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsv--iD~~~~~~v~~i~~G~------~~   80 (369)
T PF02239_consen   11 VERGSGSVAVIDGATNK-VVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSV--IDLATGKVVATIKVGG------NP   80 (369)
T ss_dssp             EEGGGTEEEEEETTT-S-EEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEE--EETTSSSEEEEEE-SS------EE
T ss_pred             EecCCCEEEEEECCCCe-EEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEE--EECCcccEEEEEecCC------Cc
Confidence            44678999999999975 4566654322 2345789999999999999999999  8988888777765322      12


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCCceeeec
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~~~~~~~  146 (147)
                      ..+                              ++||||++++.+.. ++.+.++|.++.+.+++
T Consensus        81 ~~i------------------------------~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~  115 (369)
T PF02239_consen   81 RGI------------------------------AVSPDGKYVYVANYEPGTVSVIDAETLEPVKT  115 (369)
T ss_dssp             EEE------------------------------EE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred             ceE------------------------------EEcCCCCEEEEEecCCCceeEeccccccceee
Confidence            334                              99999999887764 88999999999888764

...

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.93  E-value=3.7e-09  Score=81.88  Aligned_cols=81  Identities=17%  Similarity=0.179  Sum_probs=59.5

Q ss_pred             CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE-EeccCCceEEeeccceeeeecCCCcceeeeeeeeeee
Q 032092           29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHL  107 (147)
Q Consensus        29 ~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~-~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  107 (147)
                      |-..+..|+++||++.+++++-|+.|++-.+.. . ..+..| .||+..     |..+                      
T Consensus       150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~-f~IesfclGH~eF-----VS~i----------------------  200 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-T-FVIESFCLGHKEF-----VSTI----------------------  200 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecCCceEEEEecCc-c-cchhhhccccHhh-----eeee----------------------
Confidence            344689999999999999999999999843322 1 122222 356642     3333                      


Q ss_pred             eeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          108 FVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       108 ~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                              +.-|+ +.|++||+|+++++||..+++.+++|
T Consensus       201 --------sl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  201 --------SLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             --------eeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence                    44444 66999999999999999999999876

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.91  E-value=2.7e-09  Score=85.56  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=53.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      ||+.+.||.+||||..+++. .-...+ .-....|++|||||+++++|+.|.-|.||.+.  ..+.+..-++|+.
T Consensus       305 LA~VSqDGfLRvF~fdt~eL-lg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~--erRVVARGqGHkS  375 (636)
T KOG2394|consen  305 LATVSQDGFLRIFDFDTQEL-LGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE--ERRVVARGQGHKS  375 (636)
T ss_pred             EEEEecCceEEEeeccHHHH-HHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEec--cceEEEecccccc
Confidence            68899999999999998753 211111 11358999999999999999999999996554  4566666667765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=1.6e-08  Score=76.92  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=66.3

Q ss_pred             CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-----eccCCceEEeeccceeeee-cCCCcceeeee
Q 032092           28 PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-----CHRDGSETCSVISFTSILA-GDAPKYSSFYK  101 (147)
Q Consensus        28 ~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-----~h~~~~~~~~v~~~~~~~~-~~~~~~~~~~~  101 (147)
                      .|+..|++|+|+.||++||+.+.|++|+||+.+..+.+...-++     +|.. ...++.+.-..+.+ -+.+...+|..
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~  162 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKL  162 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEe
Confidence            35567999999999999999999999999544332221110000     1111 12333333333322 33334444444


Q ss_pred             eeee----eee--------e-ece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092          102 VKRL----HLF--------V-KSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       102 ~~~~----~~~--------~-~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .++.    ..+        + .-|    .++-.--.+++|+|++.|.+|.||+++ |+.|.+
T Consensus       163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~  223 (420)
T KOG2096|consen  163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS  223 (420)
T ss_pred             eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence            3322    110        1 011    122333445899999999999999998 776653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.90  E-value=2.3e-09  Score=57.22  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=21.6

Q ss_pred             EEecCCCeEEEeCCCCcEEEee
Q 032092          116 LFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus       116 ~fspdg~~latg~~Dg~i~iWd  137 (147)
                      +|+|++++|+||+.|+.|++||
T Consensus        18 ~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   18 AWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEETTSSEEEEEETTSEEEEEE
T ss_pred             EEecccccceeeCCCCEEEEEC
Confidence            9999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.89  E-value=2.5e-08  Score=76.00  Aligned_cols=105  Identities=12%  Similarity=0.176  Sum_probs=81.3

Q ss_pred             cCCeEEEEECCCCc--cceeEecCC-CCcceEEEEEccCC----CEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            6 ADRNLVVFNLQNPQ--TEFKRINSP-LKYQMRCVAAFPDQ----QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         6 ~dg~v~iwdi~~~~--~~~~~~~~~-~~~~i~~la~spdg----~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      ..+.+.+|.....-  +.++.+..+ +......++|+-|-    -++|+|+.-|-|+|  +|+.+++....+.+|..   
T Consensus        62 G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrV--id~~~~~~~~~~~ghG~---  136 (385)
T KOG1034|consen   62 GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRV--IDVVSGQCSKNYRGHGG---  136 (385)
T ss_pred             CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEE--EecchhhhccceeccCc---
Confidence            34578888876543  344555433 33456777887652    36888999999999  89888888888888876   


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCceeeecC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                        +++.+                              .|+|+. +++++||.|-.||+||+++..++-.|
T Consensus       137 --sINei------------------------------k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf  174 (385)
T KOG1034|consen  137 --SINEI------------------------------KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF  174 (385)
T ss_pred             --cchhh------------------------------hcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence              58888                              999987 89999999999999999999987654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.89  E-value=3.4e-09  Score=82.35  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=80.2

Q ss_pred             CeEeecCCeEEEEECC--------CC-----c-cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092            1 MVVGTADRNLVVFNLQ--------NP-----Q-TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~--------~~-----~-~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      ||+|+++|.|.+|-..        +.     + -.++.....|...|..++|+||+..+++|+.|+.+++  ||+..|..
T Consensus        80 LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l--~Dv~~G~l  157 (434)
T KOG1009|consen   80 LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL--WDVHAGQL  157 (434)
T ss_pred             eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEE--EEecccee
Confidence            6899999999999776        20     0 1223333345567899999999999999999999999  88888888


Q ss_pred             eeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           67 NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        67 ~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      ...+..|...     +...                              +|-|-++++++=+.|...+...++..+++
T Consensus       158 ~~~~~dh~~y-----vqgv------------------------------awDpl~qyv~s~s~dr~~~~~~~~~~~~~  200 (434)
T KOG1009|consen  158 LAILDDHEHY-----VQGV------------------------------AWDPLNQYVASKSSDRHPEGFSAKLKQVI  200 (434)
T ss_pred             Eeeccccccc-----ccee------------------------------ecchhhhhhhhhccCcccceeeeeeeeee
Confidence            8888778763     3444                              77777777887777777777666655544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.86  E-value=1.2e-08  Score=76.69  Aligned_cols=100  Identities=21%  Similarity=0.315  Sum_probs=69.5

Q ss_pred             eecCCeEEEEECCCCccceeEecC----CCCcceEEEEEcc--CCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccCC
Q 032092            4 GTADRNLVVFNLQNPQTEFKRINS----PLKYQMRCVAAFP--DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRDG   76 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~~~~~~~~----~~~~~i~~la~sp--dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~   76 (147)
                      +-.|..|.+|++.+..+.+....+    .++...++-+|||  ||+.+++. .|+++..  ||.|+.+....+. .|.. 
T Consensus       140 sm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~--~D~RT~~~~~sI~dAHgq-  215 (370)
T KOG1007|consen  140 SMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF--WDLRTMKKNNSIEDAHGQ-  215 (370)
T ss_pred             EeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEE--EEccchhhhcchhhhhcc-
Confidence            345899999999987542222211    1234578889999  68888874 4688877  8888655444332 2322 


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~  141 (147)
                          .+.++                              .|+|.- .+|+|||.||.|+|||++.-
T Consensus       216 ----~vrdl------------------------------DfNpnkq~~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  216 ----RVRDL------------------------------DFNPNKQHILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             ----eeeec------------------------------cCCCCceEEEEEcCCCccEEEEeccCC
Confidence                35555                              999986 57999999999999999753

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.85  E-value=5.3e-07  Score=69.50  Aligned_cols=138  Identities=12%  Similarity=0.065  Sum_probs=76.3

Q ss_pred             eEeecCCeEEEEECCCCccce----eEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCc--ceeEEEecc
Q 032092            2 VVGTADRNLVVFNLQNPQTEF----KRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQS--KNFTFKCHR   74 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~----~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~--~~~~~~~h~   74 (147)
                      ++...++.|.+||+.+.....    .....+.....+.++|+|||+++++.+. +++|.+|+++..+++  ...++..+.
T Consensus       142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p  221 (330)
T PRK11028        142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP  221 (330)
T ss_pred             EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence            345567999999998743211    0111111224678999999999887766 999999777643332  223332221


Q ss_pred             CC--------ceEEeeccceeeeecCCCcceeeeeee------eeeeeee---ceEEEEEecCCCeEEEeCC-CCcEEEe
Q 032092           75 DG--------SETCSVISFTSILAGDAPKYSSFYKVK------RLHLFVK---SHVIVLFVQIHHTFATAGS-DGAFNFW  136 (147)
Q Consensus        75 ~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~fspdg~~latg~~-Dg~i~iW  136 (147)
                      ..        ...+..+.-.+.++.+.+.....+.+.      +...+.+   ....++|+|||++|++++. +++|.+|
T Consensus       222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~  301 (330)
T PRK11028        222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVY  301 (330)
T ss_pred             CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEE
Confidence            10        011223333334443433322222221      1111111   1235799999988887765 8999999


Q ss_pred             ecC
Q 032092          137 DKD  139 (147)
Q Consensus       137 d~~  139 (147)
                      +++
T Consensus       302 ~~~  304 (330)
T PRK11028        302 EID  304 (330)
T ss_pred             EEc
Confidence            874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=5.3e-09  Score=81.31  Aligned_cols=73  Identities=21%  Similarity=0.249  Sum_probs=58.1

Q ss_pred             EEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceE
Q 032092           34 RCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHV  113 (147)
Q Consensus        34 ~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (147)
                      .++||+++|..+++|+.||++|+|+|- + -..+.....|..     .|.++                            
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~P-s-~~t~l~e~~~~~-----eV~DL----------------------------  192 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWP-S-MLTILEEIAHHA-----EVKDL----------------------------  192 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecC-c-chhhhhhHhhcC-----ccccc----------------------------
Confidence            789999999999999999999995552 2 223333334443     47888                            


Q ss_pred             EEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092          114 IVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus       114 ~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                        .|+|||+.|++-+.| ..+||+++++-.+
T Consensus       193 --~FS~dgk~lasig~d-~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  193 --DFSPDGKFLASIGAD-SARVWSVNTGAAL  220 (398)
T ss_pred             --eeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence              999999999999999 8999999988443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=1.9e-09  Score=92.13  Aligned_cols=108  Identities=17%  Similarity=0.203  Sum_probs=73.9

Q ss_pred             CeEeecCCeEEEEECCCC---cc--ceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEEecc
Q 032092            1 MVVGTADRNLVVFNLQNP---QT--EFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~---~~--~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~   74 (147)
                      ||.|.+||.|.+||...-   +.  .+.+. ..|.++|+.|.|+|.+ +.||+|+.||.|.|  ||..+-+..+++....
T Consensus        83 IaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~i--WDlnn~~tP~~~~~~~  159 (1049)
T KOG0307|consen   83 IAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILI--WDLNKPETPFTPGSQA  159 (1049)
T ss_pred             eeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEE--eccCCcCCCCCCCCCC
Confidence            467899999999998762   11  11122 2466789999999975 59999999999999  6665432222221110


Q ss_pred             CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCceee
Q 032092           75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                            ....+                           ..++|+..- ..||+++.+|++.|||++.++.+
T Consensus       160 ------~~~eI---------------------------~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi  197 (1049)
T KOG0307|consen  160 ------PPSEI---------------------------KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI  197 (1049)
T ss_pred             ------Ccccc---------------------------eEeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence                  11111                           112888754 78999999999999999887554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.82  E-value=1.3e-08  Score=90.75  Aligned_cols=141  Identities=13%  Similarity=0.200  Sum_probs=97.6

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      +||+.||.|++|....+++. -.........++.+.|+.+|+.+.++..||.+.+  |-+. .++....++|....+.+.
T Consensus      2224 ltgs~dgsv~~~~w~~~~~v-~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l--~q~~-pk~~~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2224 LTGSQDGSVRMFEWGHGQQV-VCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSL--WQAS-PKPYTSWQCHNKALSDFR 2299 (2439)
T ss_pred             EecCCCceEEEEeccCCCeE-EEeeccCcchhhhhhhcccCCceeeeccCCceee--cccC-CcceeccccCCcccccee
Confidence            68999999999999988653 3343333356888999999999999999999999  4443 456667788876432221


Q ss_pred             -eccceeeeecCCC---cceeeeeeeee---ee---eeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           82 -VISFTSILAGDAP---KYSSFYKVKRL---HL---FVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        82 -v~~~~~~~~~~~~---~~~~~~~~~~~---~~---~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                       +.++ +.++|+..   .+-.+..+...   ..   +..|-+-+++-|..++|+|||.+|.|++||++.++++|+|
T Consensus      2300 Fi~s~-~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2300 FIGSL-LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             eeehh-hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence             2233 22333222   23334433221   11   2233356899999999999999999999999999988876

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=8.5e-08  Score=70.80  Aligned_cols=133  Identities=13%  Similarity=0.111  Sum_probs=89.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc---
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS---   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~---   77 (147)
                      ++.++.|+.++-||+.+++  +++...+|..-+.+++--.-...+.+|+.||+++|  ||.++++...++...++..   
T Consensus       129 i~~AgGD~~~y~~dlE~G~--i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRv--Wd~kt~k~v~~ie~yk~~~~lR  204 (325)
T KOG0649|consen  129 ILFAGGDGVIYQVDLEDGR--IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRV--WDTKTQKHVSMIEPYKNPNLLR  204 (325)
T ss_pred             EEEecCCeEEEEEEecCCE--EEEEEcCCcceeeeeeecccCcceeecCCCccEEE--EeccccceeEEeccccChhhcC
Confidence            4567899999999999995  33333356556899987444557889999999999  8888888777664433221   


Q ss_pred             -------eEEeeccceeeeecCCC-cceeeeeeeee-eeeeeceEE-EEEecCCCeEEEeCCCCcEEEeecC
Q 032092           78 -------ETCSVISFTSILAGDAP-KYSSFYKVKRL-HLFVKSHVI-VLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        78 -------~~~~v~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~-~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                             .+..+++.+++-+|+.. ..+.+...+.. ..-+++|.. +.|-.|  .+.++|.-..|.-|-+.
T Consensus       205 p~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  205 PDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             cccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeec
Confidence                   24556666666665544 45555544433 445678765 677555  56666767788888653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.80  E-value=4.5e-08  Score=83.22  Aligned_cols=137  Identities=12%  Similarity=0.068  Sum_probs=94.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCccee-EEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF-TFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~-~~~~h~~~~~~   79 (147)
                      +++|+.-+.|.+|+....+++.  ....|+..+.++.++-||.++++.|+|.++++|.+|.+  +... +.-+|+.....
T Consensus       148 i~~gsv~~~iivW~~~~dn~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~--~~~~~~~fgHsaRvw~  223 (967)
T KOG0974|consen  148 IASGSVFGEIIVWKPHEDNKPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR--EVLGCTGFGHSARVWA  223 (967)
T ss_pred             EEeccccccEEEEeccccCCcc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccc--cccCcccccccceeEE
Confidence            3678888999999999665554  23467788999999999999999999999999666554  3332 44567765322


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeece-----EEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH-----VIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      .......++++|.|=++++|...-.......+|     =+++..+..-...|++.||.+++||+..+
T Consensus       224 ~~~~~n~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  224 CCFLPNRIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEeccceeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            222222345556555766663111111133333     36888888889999999999999998653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.80  E-value=4.3e-08  Score=82.01  Aligned_cols=101  Identities=18%  Similarity=0.326  Sum_probs=71.3

Q ss_pred             cCCeEEEEECCCCcccee--EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC-CCc-c-eeEEEeccCCceEE
Q 032092            6 ADRNLVVFNLQNPQTEFK--RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS-QQS-K-NFTFKCHRDGSETC   80 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~--~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~-~~~-~-~~~~~~h~~~~~~~   80 (147)
                      .+..+.+|++.+..+-+-  .+...|.+.+++.++||+++++|+|..||+|.+| .|.. +.. . ...+.=|..     
T Consensus       179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw-~d~~~~~~~~t~t~lHWH~~-----  252 (792)
T KOG1963|consen  179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVW-RDFGSSDDSETCTLLHWHHD-----  252 (792)
T ss_pred             EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEE-eccccccccccceEEEeccc-----
Confidence            455688899987542111  1112344568999999999999999999999995 3443 111 1 112222332     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      .|+++                              +|++||.+|.|||..|.+.+|-+++++
T Consensus       253 ~V~~L------------------------------~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  253 EVNSL------------------------------SFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             cccee------------------------------EEecCCceEeecccceEEEEEeecCCC
Confidence            35666                              999999999999999999999999876

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.79  E-value=1.3e-07  Score=75.61  Aligned_cols=100  Identities=15%  Similarity=0.178  Sum_probs=75.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ||+|+..|.-.+.|..+.. .+.... . ..|+++++|+|+|.+||+|+-|+.|.|+-.+.. ++......-|+.    .
T Consensus       421 va~Gt~~G~w~V~d~e~~~-lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~-g~~y~r~~k~~g----s  492 (626)
T KOG2106|consen  421 VAVGTATGRWFVLDTETQD-LVTIHT-D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN-GRKYSRVGKCSG----S  492 (626)
T ss_pred             EEEeeccceEEEEecccce-eEEEEe-c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-CcEEEEeeeecC----c
Confidence            5789999999999999954 333222 2 468999999999999999999999999555543 333333322322    2


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                      ++..+                              .||+|+++|.+-+.|-.|-.|..
T Consensus       493 ~ithL------------------------------DwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  493 PITHL------------------------------DWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             eeEEe------------------------------eecCCCceEEeccCceEEEEEcc
Confidence            45555                              99999999999999999999954

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.79  E-value=1.5e-08  Score=83.48  Aligned_cols=70  Identities=21%  Similarity=0.313  Sum_probs=61.0

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS  111 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (147)
                      .|..+||-|||..|+.+.. .++.+  +|+..|..+.++++|+.     .|+.+                          
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlli--yD~ndG~llqtLKgHKD-----tVycV--------------------------   59 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLV--YDTSDGTLLQPLKGHKD-----TVYCV--------------------------   59 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEE--EeCCCcccccccccccc-----eEEEE--------------------------
Confidence            5899999999998887664 56777  89999999999999997     36666                          


Q ss_pred             eEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092          112 HVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus       112 ~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                          +|+.||+.||+|++|+.|.+|+-+
T Consensus        60 ----Ays~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   60 ----AYAKDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             ----EEccCCceeccCCCceeEEEeccc
Confidence                999999999999999999999865

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=5.6e-08  Score=73.57  Aligned_cols=117  Identities=13%  Similarity=0.224  Sum_probs=68.1

Q ss_pred             CeEeecC-----CeEEEEECCCCccceeEecC--CCCcceEEEEEccC-C---CEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092            1 MVVGTAD-----RNLVVFNLQNPQTEFKRINS--PLKYQMRCVAAFPD-Q---QGFWVGSIEGRVGVHHLDDSQQSKNFT   69 (147)
Q Consensus         1 l~~gs~d-----g~v~iwdi~~~~~~~~~~~~--~~~~~i~~la~spd-g---~~l~~g~~dg~i~i~~~d~~~~~~~~~   69 (147)
                      ||+|+.+     +.++||.-.+.......+..  .+..+|++|+|.|+ |   ..||+++.|| |+|  |.+....... 
T Consensus       187 iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I--~~v~~~~s~i-  262 (361)
T KOG2445|consen  187 IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI--FKVKVARSAI-  262 (361)
T ss_pred             EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE--EEEeeccchh-
Confidence            4566555     58899987765321222222  35578999999998 4   4689999999 999  5443211100 


Q ss_pred             EEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           70 FKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        70 ~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      +.....     ..+.+.        .    .++ ..+..+..|+    ++.|+-.|..|++.|.||.||+|...
T Consensus       263 ~~ee~~-----~~~~~~--------~----l~v-~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  263 EEEEVL-----APDLMT--------D----LPV-EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             hhhccc-----CCCCcc--------c----cce-EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            000000     000000        0    000 0011233343    46999999999999999999999753

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.75  E-value=8.8e-08  Score=79.01  Aligned_cols=128  Identities=18%  Similarity=0.170  Sum_probs=78.1

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccCCceEEeec
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSETCSVI   83 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~~~~~~v~   83 (147)
                      ..+..+.+||...|.. .+++. +|+..|.++|++.||+.||+|+.|..+.+  |...   ....++ .|.....+-+.+
T Consensus        30 AAg~rlliyD~ndG~l-lqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~--W~~k---lEG~LkYSH~D~IQCMsFN  102 (1081)
T KOG1538|consen   30 AAGSRLLVYDTSDGTL-LQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVII--WTSK---LEGILKYSHNDAIQCMSFN  102 (1081)
T ss_pred             ecCCEEEEEeCCCccc-ccccc-cccceEEEEEEccCCceeccCCCceeEEE--eccc---ccceeeeccCCeeeEeecC
Confidence            3456799999999864 34443 57778999999999999999999999999  7653   222222 254432222222


Q ss_pred             cceee-eec--CCCcceeeeeeeee--eeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           84 SFTSI-LAG--DAPKYSSFYKVKRL--HLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        84 ~~~~~-~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .+.-+ ++-  +|-+.|.-.+ +.+  ..+..-...|+|+.||++||-|-.||+|.|-|...
T Consensus       103 P~~h~LasCsLsdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g  163 (1081)
T KOG1538|consen  103 PITHQLASCSLSDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG  163 (1081)
T ss_pred             chHHHhhhcchhhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence            22111 110  1111111000 000  00111124689999999999999999999998644

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=5.2e-08  Score=74.86  Aligned_cols=109  Identities=15%  Similarity=0.237  Sum_probs=79.8

Q ss_pred             CeEeecCCeEEEEECCCCcc----ceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCC---CcceeEEEe
Q 032092            1 MVVGTADRNLVVFNLQNPQT----EFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQ---QSKNFTFKC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~----~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~---~~~~~~~~~   72 (147)
                      +..|+..|.|..+|+|...+    +.+.+.  |...|++|..=. ++++|.+++++|+|.+  ||.|-   ++.+.++.|
T Consensus       267 v~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvtslq~Lq~s~q~LmaS~M~gkikL--yD~R~~K~~~~V~qYeG  342 (425)
T KOG2695|consen  267 VFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTSLQILQFSQQKLMASDMTGKIKL--YDLRATKCKKSVMQYEG  342 (425)
T ss_pred             eEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhhhhhhccccceEeeccCcCceeE--eeehhhhcccceeeeec
Confidence            35688899999999998632    333443  334577776654 5889999999999999  66663   445888999


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      |.+...   ...+                              -.+|....++++|.|...|||.++++.++.+
T Consensus       343 HvN~~a---~l~~------------------------------~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  343 HVNLSA---YLPA------------------------------HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             cccccc---cccc------------------------------ccccccceEEEccCeeEEEEEecccCceeec
Confidence            976421   1112                              3456667888899999999999999988765

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=4e-08  Score=75.14  Aligned_cols=103  Identities=13%  Similarity=0.263  Sum_probs=72.1

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF   85 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~   85 (147)
                      |-.|.+||+|..++++..+...|...|++|.|+|+ .+.|++||.||-|.|  +|+......-.+. |.- .+..++.. 
T Consensus       142 ~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl--fD~~~d~EeDaL~-~vi-N~~sSI~~-  216 (376)
T KOG1188|consen  142 DASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL--FDTKKDNEEDALL-HVI-NHGSSIHL-  216 (376)
T ss_pred             ceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe--eecCCCcchhhHH-Hhh-cccceeee-
Confidence            55789999999877666565556667999999995 789999999999999  7775321111110 000 01112333 


Q ss_pred             eeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCcee
Q 032092           86 TSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~  143 (147)
                                                   +.|+.++ +.+.+=+-+.+..+|+++.+..
T Consensus       217 -----------------------------igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  217 -----------------------------IGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             -----------------------------eeeecCCcceEEEEEccCceeEEEccCCCh
Confidence                                         3899888 5677778899999999988764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=9.9e-08  Score=74.54  Aligned_cols=107  Identities=13%  Similarity=0.123  Sum_probs=81.7

Q ss_pred             CeEeecCCeEEEEECCCC-----ccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNP-----QTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~-----~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      ||+|+.|..+++|++.+-     .+|+.....+|...|.||+|....+.+.+|..+|+|.+  -|+.+.+.++.+....+
T Consensus        71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~--HDiEt~qsi~V~~~~~~  148 (609)
T KOG4227|consen   71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK--HDIETKQSIYVANENNN  148 (609)
T ss_pred             EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe--eecccceeeeeecccCc
Confidence            689999999999998532     13555455566667999999988888999999999999  56655566666542222


Q ss_pred             CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      .   ..|+.+                              .-||..+.||+.+.||.|.|||.++.+
T Consensus       149 ~---~~VY~m------------------------------~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  149 R---GDVYHM------------------------------DQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             c---cceeec------------------------------ccCCCCceEEEEecCceEEEEeccCCC
Confidence            2   235555                              789988999999999999999998765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.72  E-value=2.1e-07  Score=74.62  Aligned_cols=93  Identities=12%  Similarity=0.120  Sum_probs=60.7

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCCcceeEEEeccCCceEEeeccce
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFT   86 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~   86 (147)
                      ..|++||+.+++..  .+.. ......+++|+|||+.|+.++ .+|.+.||.+|..+++ ...+..+..     .+.+. 
T Consensus       228 ~~i~i~dl~tg~~~--~l~~-~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~-----~~~~~-  297 (429)
T PRK01742        228 SQLVVHDLRSGARK--VVAS-FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAG-----NNTEP-  297 (429)
T ss_pred             cEEEEEeCCCCceE--EEec-CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCC-----CcCCE-
Confidence            47999999887531  2221 122345789999999988765 6898888878876543 334443321     12333 


Q ss_pred             eeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEe-CCCCcEEEeecC
Q 032092           87 SILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATA-GSDGAFNFWDKD  139 (147)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg-~~Dg~i~iWd~~  139 (147)
                                                   +|+|||+.|+.+ ..+|...||++.
T Consensus       298 -----------------------------~wSpDG~~i~f~s~~~g~~~I~~~~  322 (429)
T PRK01742        298 -----------------------------SWSPDGQSILFTSDRSGSPQVYRMS  322 (429)
T ss_pred             -----------------------------EECCCCCEEEEEECCCCCceEEEEE
Confidence                                         899999766544 457778888764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=5.6e-08  Score=78.49  Aligned_cols=104  Identities=21%  Similarity=0.320  Sum_probs=77.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCCc--------ceeEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQS--------KNFTF   70 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~~--------~~~~~   70 (147)
                      |++||+|-.+-|||.-.. ++.+.+..+|...|.|+.|-|.  .+.+++|..|..|+++|.+...+.        ...-+
T Consensus        65 L~SGSDD~r~ivWd~~~~-KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~  143 (758)
T KOG1310|consen   65 LASGSDDTRLIVWDPFEY-KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW  143 (758)
T ss_pred             EeecCCcceEEeecchhc-ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh
Confidence            689999999999999976 4677887777778999999995  567889999999999544432111        11122


Q ss_pred             EeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092           71 KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        71 ~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~  140 (147)
                      .+|...     +-.                              ++-.|++ +.|-+++.||+|+.+|+++
T Consensus       144 ~cht~r-----VKr------------------------------ia~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  144 SCHTDR-----VKR------------------------------IATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             hhhhhh-----hhh------------------------------eecCCCCCceEEEecCCcceeeecccC
Confidence            334321     222                              2778888 8999999999999999986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.69  E-value=6.6e-09  Score=86.98  Aligned_cols=96  Identities=14%  Similarity=0.232  Sum_probs=81.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++|+.|..|+||...+..++ ... .+|...|+.+|.+.+..++|+++.|..|++  |-...+.++..+.+|+.     
T Consensus       205 Iitgsdd~lvKiwS~et~~~l-As~-rGhs~ditdlavs~~n~~iaaaS~D~vIrv--Wrl~~~~pvsvLrghtg-----  275 (1113)
T KOG0644|consen  205 IITGSDDRLVKIWSMETARCL-ASC-RGHSGDITDLAVSSNNTMIAAASNDKVIRV--WRLPDGAPVSVLRGHTG-----  275 (1113)
T ss_pred             EeecCccceeeeeeccchhhh-ccC-CCCccccchhccchhhhhhhhcccCceEEE--EecCCCchHHHHhcccc-----
Confidence            579999999999998887543 222 256677999999999999999999999999  88888889888999986     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      +|+++                              +|+|-.    +.+.||++++||.+
T Consensus       276 avtai------------------------------afsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  276 AVTAI------------------------------AFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             ceeee------------------------------ccCccc----cCCCCCceEecccc
Confidence            57777                              999974    66789999999987

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.68  E-value=3.5e-07  Score=75.38  Aligned_cols=136  Identities=10%  Similarity=0.099  Sum_probs=88.8

Q ss_pred             CeEeecCCeEEEEECCCCc----------------cce-------e------EecCCCCcceEEEEEccCCCEEEEEeeC
Q 032092            1 MVVGTADRNLVVFNLQNPQ----------------TEF-------K------RINSPLKYQMRCVAAFPDQQGFWVGSIE   51 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~----------------~~~-------~------~~~~~~~~~i~~la~spdg~~l~~g~~d   51 (147)
                      ||++|.|..||||.+.-..                +++       .      .+.-+|...|.++.|+|.+..|++++.|
T Consensus       209 laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaD  288 (764)
T KOG1063|consen  209 LASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASAD  288 (764)
T ss_pred             EEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccC
Confidence            6899999999999875432                000       0      1111455679999999999999999999


Q ss_pred             CeEEEEeecCCCCcceeE--EE----eccCC---ceEEeeccceeeeecCCCcceeeeeeeee----eeeeeceE----E
Q 032092           52 GRVGVHHLDDSQQSKNFT--FK----CHRDG---SETCSVISFTSILAGDAPKYSSFYKVKRL----HLFVKSHV----I  114 (147)
Q Consensus        52 g~i~i~~~d~~~~~~~~~--~~----~h~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~  114 (147)
                      .++.+  |.+.+..-+..  .+    ++...   +..+..++...++.|.-.+...++..+..    ...+.||+    .
T Consensus       289 ksmii--W~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~d  366 (764)
T KOG1063|consen  289 KSMII--WKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKD  366 (764)
T ss_pred             cceEE--EecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccccee
Confidence            99999  65543322221  11    12211   12344555444555666666666622211    22456775    6


Q ss_pred             EEEecCCCeEEEeCCCCcEEEeec
Q 032092          115 VLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus       115 ~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                      ++|+|.|.+|+|.|.|.+-|++-.
T Consensus       367 v~W~psGeflLsvs~DQTTRlFa~  390 (764)
T KOG1063|consen  367 VDWDPSGEFLLSVSLDQTTRLFAR  390 (764)
T ss_pred             eeecCCCCEEEEeccccceeeecc
Confidence            999999999999999999998754

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.68  E-value=3.4e-07  Score=75.34  Aligned_cols=143  Identities=14%  Similarity=0.169  Sum_probs=83.5

Q ss_pred             CeEeecCCeEEEEECCCCccc-ee---EecCCCCcceEEEEEccCCC--EEEEEeeCCeEEEEeecCCCCcc-eeEE--E
Q 032092            1 MVVGTADRNLVVFNLQNPQTE-FK---RINSPLKYQMRCVAAFPDQQ--GFWVGSIEGRVGVHHLDDSQQSK-NFTF--K   71 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~-~~---~~~~~~~~~i~~la~spdg~--~l~~g~~dg~i~i~~~d~~~~~~-~~~~--~   71 (147)
                      ||.|+.+|.|.+||++.+..+ ..   .....|..++..+.|-.+..  -|++++.||+|..|+.|...... ....  .
T Consensus       258 l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~  337 (555)
T KOG1587|consen  258 LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK  337 (555)
T ss_pred             EEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc
Confidence            578899999999999987541 11   12234566788888876644  49999999999996444332100 0000  1


Q ss_pred             eccC---------CceEEeeccceeeeecCCCcceee---eeee-------eee----eeeeceEEEEEecCC-CeEEEe
Q 032092           72 CHRD---------GSETCSVISFTSILAGDAPKYSSF---YKVK-------RLH----LFVKSHVIVLFVQIH-HTFATA  127 (147)
Q Consensus        72 ~h~~---------~~~~~~v~~~~~~~~~~~~~~~~~---~~~~-------~~~----~~~~~~~~~~fspdg-~~latg  127 (147)
                      .|..         ....+....-..+..|.|.+....   +...       +.+    .+...|..+.++|-+ +.|+|+
T Consensus       338 ~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~  417 (555)
T KOG1587|consen  338 KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV  417 (555)
T ss_pred             cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee
Confidence            1110         012333333344666777653321   1111       111    123445679999988 566666


Q ss_pred             CCCCcEEEeecC-Cceee
Q 032092          128 GSDGAFNFWDKD-SKQRL  144 (147)
Q Consensus       128 ~~Dg~i~iWd~~-~~~~~  144 (147)
                      + |-+|+||... ....+
T Consensus       418 g-DW~vriWs~~~~~~Pl  434 (555)
T KOG1587|consen  418 G-DWTVRIWSEDVIASPL  434 (555)
T ss_pred             c-cceeEeccccCCCCcc
Confidence            6 9999999977 44444

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.67  E-value=4.6e-07  Score=69.87  Aligned_cols=102  Identities=14%  Similarity=0.102  Sum_probs=63.2

Q ss_pred             eEeecCCeEEEEECCCCcc--ceeEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            2 VVGTADRNLVVFNLQNPQT--EFKRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~--~~~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      ++...++.|++||+.+..+  ..+.+..  ......|+++||+++|++++ .++.|.+|+++ .+++.. ......... 
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~-~~~~~~~~~-   80 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALT-FAAESPLPG-   80 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceE-EeeeecCCC-
Confidence            3446789999999974322  2233322  23467899999999887654 58888885554 233221 111111000 


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDS  140 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~  140 (147)
                        .+..                              ++|+|+|++|++++. ++.|.+||+++
T Consensus        81 --~p~~------------------------------i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         81 --SPTH------------------------------ISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             --CceE------------------------------EEECCCCCEEEEEEcCCCeEEEEEECC
Confidence              1122                              399999988777664 88999999864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=1.4e-06  Score=69.86  Aligned_cols=132  Identities=11%  Similarity=0.009  Sum_probs=76.8

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcceeEEEeccC--CceEEeecc
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKNFTFKCHRD--GSETCSVIS   84 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~~~~~~h~~--~~~~~~v~~   84 (147)
                      ..|.+||+.+++.  ..+.. ....+.+.+|||||+.++ +.+.+|...||.+|...+. ...+..+..  ....+..+.
T Consensus       220 ~~I~~~dl~~g~~--~~l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG  295 (427)
T PRK02889        220 PVVYVHDLATGRR--RVVAN-FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDG  295 (427)
T ss_pred             cEEEEEECCCCCE--EEeec-CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCC
Confidence            4699999998853  22321 223466899999999887 4677888888778876443 334433321  122344444


Q ss_pred             ceeeeecCCC-cceeee-eee--ee-eeeeec--eEEEEEecCCCeEEEeCCCC---cEEEeecCCcee
Q 032092           85 FTSILAGDAP-KYSSFY-KVK--RL-HLFVKS--HVIVLFVQIHHTFATAGSDG---AFNFWDKDSKQR  143 (147)
Q Consensus        85 ~~~~~~~~~~-~~~~~~-~~~--~~-~~~~~~--~~~~~fspdg~~latg~~Dg---~i~iWd~~~~~~  143 (147)
                      -.++..+... ...++. ++.  .. ...+.+  ....+|+|||++|+..+.++   .|.+||+.+++.
T Consensus       296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        296 RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            3333333322 222222 111  11 112222  23579999999988766554   699999987653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.66  E-value=2.2e-07  Score=75.41  Aligned_cols=90  Identities=13%  Similarity=0.232  Sum_probs=64.7

Q ss_pred             EEEECCCCcc-ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeee
Q 032092           11 VVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSIL   89 (147)
Q Consensus        11 ~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~   89 (147)
                      .+|++.+.+. .+.....+.+.++.|.|++|+.+.|+.|+.||+|.+  ||...+.  .++...     .+.++-+    
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL--yD~~~~~--t~~~ka-----~~~P~~i----  305 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL--YDTTRGV--TLLAKA-----EFIPTLI----  305 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE--EEcCCCe--eeeeee-----cccceEE----
Confidence            4677765431 122223356667999999999999999999999999  7765432  222211     1234444    


Q ss_pred             ecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           90 AGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                                                +|||+|..|+.|+.-|.+.+||+.
T Consensus       306 --------------------------aWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  306 --------------------------AWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             --------------------------EEcCCCcEEEEEcCCceEEEEEee
Confidence                                      999999999999999999999974

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.66  E-value=1.8e-07  Score=80.25  Aligned_cols=105  Identities=15%  Similarity=0.197  Sum_probs=70.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCC---cceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQ---SKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~---~~~~~~~~h~~~   76 (147)
                      |+++++-..|+|||+.+.++ .+.+-.....-++++.-+- .|+.+++|..||.+++  +|.|-.   ..+..++.|...
T Consensus      1180 Ll~tGd~r~IRIWDa~~E~~-~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRv--yD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQV-VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRV--YDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred             EEecCCeeEEEEEeccccee-EeecccCCCccceeecccccCCceEEEeecCCceEE--eecccCCccccceeecccCCc
Confidence            35566688999999998643 3333222223466665433 3799999999999999  776632   234445555432


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~  141 (147)
                      .   ++..                              +.+.+.| ..|++|+.||.|++||++..
T Consensus      1257 ~---~Iv~------------------------------~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1257 E---PIVH------------------------------LSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             c---ccee------------------------------EEeecCCCcceeeeccCCeEEEEecccC
Confidence            1   1222                              3788877 56999999999999999863

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.66  E-value=9.8e-08  Score=76.94  Aligned_cols=126  Identities=15%  Similarity=0.189  Sum_probs=81.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ++.++.||++.|-+-... .  ...-++|...+.+-.|+|||.-|++.+.||.|+|  |.. +|-..-++. .       
T Consensus        78 ~~i~s~DGkf~il~k~~r-V--E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKi--WSr-sGMLRStl~-Q-------  143 (737)
T KOG1524|consen   78 LLICSNDGRFVILNKSAR-V--ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKI--WSR-SGMLRSTVV-Q-------  143 (737)
T ss_pred             EEEEcCCceEEEecccch-h--hhhhhhhhhhhhhcccCCCCceeeeecCCceEEE--Eec-cchHHHHHh-h-------
Confidence            467899999998875542 2  2222356667889999999999999999999999  543 232211111 0       


Q ss_pred             eeccceeeeecCCCcceee--------eeeeeeee--eeece----EEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           81 SVISFTSILAGDAPKYSSF--------YKVKRLHL--FVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .-.++..+..++++.-.+|        ++|.....  .-++|    ++|.|+|....++|||.|-..+|||...
T Consensus       144 ~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G  217 (737)
T KOG1524|consen  144 NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG  217 (737)
T ss_pred             cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence            1123333444555532221        22322222  22555    5799999999999999999999999753

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=1.7e-07  Score=72.40  Aligned_cols=110  Identities=17%  Similarity=0.250  Sum_probs=72.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC--CcceeEEEeccCC-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ--QSKNFTFKCHRDG-   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~--~~~~~~~~~h~~~-   76 (147)
                      +|++..|-.|++||-... .+ ..+.+..+..|.||||-|. +..|++|+..|.+ ||..|.+-  ++.+.....|... 
T Consensus       113 fava~nddvVriy~ksst-~p-t~Lks~sQrnvtclawRPlsaselavgCr~gIc-iW~~s~tln~~r~~~~~s~~~~qv  189 (445)
T KOG2139|consen  113 FAVATNDDVVRIYDKSST-CP-TKLKSVSQRNVTCLAWRPLSASELAVGCRAGIC-IWSDSRTLNANRNIRMMSTHHLQV  189 (445)
T ss_pred             hhhhccCcEEEEeccCCC-CC-ceecchhhcceeEEEeccCCcceeeeeecceeE-EEEcCcccccccccccccccchhh
Confidence            477889999999999873 33 2344444557999999997 5678999887755 65444321  1111101111110 


Q ss_pred             ----ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCCceee
Q 032092           77 ----SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDSKQRL  144 (147)
Q Consensus        77 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~~~~~  144 (147)
                          ++ .+|++                              +.|++||..|++++. |..|.|||..++.++
T Consensus       190 l~~pgh-~pVts------------------------------mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~  231 (445)
T KOG2139|consen  190 LQDPGH-NPVTS------------------------------MQWNEDGTILVTASFGSSSIMIWDPDTGQKI  231 (445)
T ss_pred             eeCCCC-ceeeE------------------------------EEEcCCCCEEeecccCcceEEEEcCCCCCcc
Confidence                01 13444                              499999999999987 678999999887653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.65  E-value=3.2e-07  Score=74.12  Aligned_cols=107  Identities=11%  Similarity=0.134  Sum_probs=85.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec-CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      ||-|...|.|.+|++..++. ..++. ..|...|.++.++.+-.+|.+++.|+.+-.  |+..+.+....+++.+.    
T Consensus        73 lvlgt~~g~v~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~--~~~~~~~~~~~~~~~~~----  145 (541)
T KOG4547|consen   73 LVLGTPQGSVLLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVY--ILEKEKVIIRIWKEQKP----  145 (541)
T ss_pred             EEeecCCccEEEEEecCCeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEE--EecccceeeeeeccCCC----
Confidence            46678899999999999864 23343 345667999999999899999999999988  77776666666665443    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                       .+.++                              +.+|||++|++|+  +.|++||+++++.+.+|
T Consensus       146 -~~~sl------------------------------~is~D~~~l~~as--~~ik~~~~~~kevv~~f  180 (541)
T KOG4547|consen  146 -LVSSL------------------------------CISPDGKILLTAS--RQIKVLDIETKEVVITF  180 (541)
T ss_pred             -ccceE------------------------------EEcCCCCEEEecc--ceEEEEEccCceEEEEe
Confidence             24455                              9999999999987  68999999999999887

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.65  E-value=3.7e-07  Score=68.86  Aligned_cols=102  Identities=18%  Similarity=0.236  Sum_probs=71.2

Q ss_pred             eecCCeEEEEECCCCccceeE-------ecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCC---cceeEEEe
Q 032092            4 GTADRNLVVFNLQNPQTEFKR-------INSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQ---SKNFTFKC   72 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~~~~~-------~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~---~~~~~~~~   72 (147)
                      ++.+-.+|||-+...+..+..       ..+....|+++..|+. |.+++.+++.|-++.|  ||+.++   .....+-.
T Consensus       117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTi--Wdie~~~~~~vkTQLIA  194 (364)
T KOG0290|consen  117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTI--WDIETGVSGTVKTQLIA  194 (364)
T ss_pred             hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEE--EEEeeccccceeeEEEe
Confidence            345567999999853322210       1122334688888876 5789999999999999  555443   23444556


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCce
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~  142 (147)
                      |..+     |..+                              +|...+ ++||+.|.||.||++|++...
T Consensus       195 HDKE-----V~DI------------------------------af~~~s~~~FASvgaDGSvRmFDLR~le  230 (364)
T KOG0290|consen  195 HDKE-----VYDI------------------------------AFLKGSRDVFASVGADGSVRMFDLRSLE  230 (364)
T ss_pred             cCcc-----eeEE------------------------------EeccCccceEEEecCCCcEEEEEecccc
Confidence            6653     5565                              999977 899999999999999998653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.64  E-value=5e-07  Score=68.79  Aligned_cols=136  Identities=9%  Similarity=0.079  Sum_probs=88.3

Q ss_pred             CeEeecCCeEEEEECCCCc--cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEee-cCCCCcceeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQ--TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHL-DDSQQSKNFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~--~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~-d~~~~~~~~~~~~h~~~~   77 (147)
                      +|++.....|.||.....+  ++.+++. .|...|+.|.|+|..+.|++++.|..-++|.. +-.+-++...+.-|....
T Consensus        25 iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAA  103 (361)
T KOG1523|consen   25 IAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAA  103 (361)
T ss_pred             EEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccce
Confidence            4677778899999988764  2344443 45667999999999999999999999999443 222334444444343322


Q ss_pred             --eEEeeccceeeeecCCC-cceeeeeeeeeee----ee-----eceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092           78 --ETCSVISFTSILAGDAP-KYSSFYKVKRLHL----FV-----KSHVIVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        78 --~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~----~~-----~~~~~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                        ..+++.+- +++.|+-+ .+-+.|......+    ++     ...++++|||.+-+||+|+.|+++|++..
T Consensus       104 t~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  104 TCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             eeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence              23555554 45554444 4444332222222    22     12357999999999999999999999864

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.62  E-value=6.9e-07  Score=77.67  Aligned_cols=144  Identities=17%  Similarity=0.228  Sum_probs=78.8

Q ss_pred             CeEeecCCeEEEEECCCCccc--e-e---EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE---
Q 032092            1 MVVGTADRNLVVFNLQNPQTE--F-K---RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK---   71 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~--~-~---~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~---   71 (147)
                      +++||.||+|++||.++-...  . .   ++ ++....+.++..-+.+++||+|+.||.|++..+|....+......   
T Consensus      1064 FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri 1142 (1431)
T KOG1240|consen 1064 FVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRI 1142 (1431)
T ss_pred             EEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeec
Confidence            489999999999999874321  1 1   11 122346888999999999999999999999555542221111000   


Q ss_pred             --eccCCc----eEEeeccce-eeeecCCCcceeeeeee--eeeeee---ec---eEEEEEecCCCeEEEeCCCCcEEEe
Q 032092           72 --CHRDGS----ETCSVISFT-SILAGDAPKYSSFYKVK--RLHLFV---KS---HVIVLFVQIHHTFATAGSDGAFNFW  136 (147)
Q Consensus        72 --~h~~~~----~~~~v~~~~-~~~~~~~~~~~~~~~~~--~~~~~~---~~---~~~~~fspdg~~latg~~Dg~i~iW  136 (147)
                        .+....    +++.-.... .+..+-+-.-.+.+...  +..+.+   ..   .++++.+|-+++++.|.+-|.+.+|
T Consensus      1143 ~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lW 1222 (1431)
T KOG1240|consen 1143 PNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLW 1222 (1431)
T ss_pred             ccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEE
Confidence              010000    000000000 00000000000011100  001111   11   2578999999999999999999999


Q ss_pred             ecCCceeee
Q 032092          137 DKDSKQRLK  145 (147)
Q Consensus       137 d~~~~~~~~  145 (147)
                      |++=+..+.
T Consensus      1223 DLRF~~~i~ 1231 (1431)
T KOG1240|consen 1223 DLRFRVPIL 1231 (1431)
T ss_pred             EeecCceee
Confidence            997555443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.62  E-value=3.7e-07  Score=69.74  Aligned_cols=135  Identities=10%  Similarity=0.140  Sum_probs=79.1

Q ss_pred             eEeecCCeEEEEECCCCccceeEecC-CCC---cceEEEEEccCCCEEEEEeeCCeEEEEeecC-CCCcc--eeEEEecc
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINS-PLK---YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD-SQQSK--NFTFKCHR   74 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~-~~~---~~i~~la~spdg~~l~~g~~dg~i~i~~~d~-~~~~~--~~~~~~h~   74 (147)
                      |+.+.+.-|++||.-+++. ...+.. .+.   ....||+|+|||++|.+|. ...|++  ||+ |.|+.  .++-..|.
T Consensus       127 a~ssr~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirv--Fdt~RpGr~c~vy~t~~~~  202 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRV--FDTSRPGRDCPVYTTVTKG  202 (406)
T ss_pred             eeccccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEE--eeccCCCCCCcchhhhhcc
Confidence            5567889999999999863 222210 111   1367999999999998876 478999  887 43432  22211121


Q ss_pred             CCc-----e--EEeeccceeeeecCCCc-ceeeeeee-eeeeeeec----eEEEEEecCCCeEEEeCC-CCcEEEeecCC
Q 032092           75 DGS-----E--TCSVISFTSILAGDAPK-YSSFYKVK-RLHLFVKS----HVIVLFVQIHHTFATAGS-DGAFNFWDKDS  140 (147)
Q Consensus        75 ~~~-----~--~~~v~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~----~~~~~fspdg~~latg~~-Dg~i~iWd~~~  140 (147)
                      ..+     .  ++.+....+.+.|+=.. +-++.... +....+.|    ++.+.|+|||+.|.+|.. |-+|-.||++.
T Consensus       203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            111     1  11122222333343331 11222222 22333444    478999999999999887 77899999974

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=3.9e-07  Score=73.06  Aligned_cols=93  Identities=18%  Similarity=0.116  Sum_probs=59.7

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC---CeEEEEeecCCCCcc--eeEEEeccCCceEEe
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE---GRVGVHHLDDSQQSK--NFTFKCHRDGSETCS   81 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d---g~i~i~~~d~~~~~~--~~~~~~h~~~~~~~~   81 (147)
                      +..|.+||......  +.+. .+...+.+.+|||||+.++..+.+   ..|.+  ||+.+++.  +..+.+|        
T Consensus       183 ~~~i~i~d~dg~~~--~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i--~dl~tg~~~~l~~~~g~--------  249 (429)
T PRK01742        183 PYEVRVADYDGFNQ--FIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVV--HDLRSGARKVVASFRGH--------  249 (429)
T ss_pred             eEEEEEECCCCCCc--eEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEE--EeCCCCceEEEecCCCc--------
Confidence            57899999876542  2333 234468999999999999987654   35777  67665533  1112221        


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-CCCcEEE--eecCCce
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-SDGAFNF--WDKDSKQ  142 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~Dg~i~i--Wd~~~~~  142 (147)
                      ....                              +|+|||+.|+.++ .||.+.|  ||+.+++
T Consensus       250 ~~~~------------------------------~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~  283 (429)
T PRK01742        250 NGAP------------------------------AFSPDGSRLAFASSKDGVLNIYVMGANGGT  283 (429)
T ss_pred             cCce------------------------------eECCCCCEEEEEEecCCcEEEEEEECCCCC
Confidence            1123                              9999998887764 5776555  4665554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.57  E-value=1.6e-07  Score=80.59  Aligned_cols=108  Identities=14%  Similarity=0.173  Sum_probs=75.4

Q ss_pred             CeEeecCCeEEEEECCCC-ccceeEecCCCC-c-ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-
Q 032092            1 MVVGTADRNLVVFNLQNP-QTEFKRINSPLK-Y-QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~-~~~~~~~~~~~~-~-~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-   76 (147)
                      |++|+.||.|++||+|.. ...+-++..+-+ + .+++|..+++...+|+|+. +.|+|  |++. |+.+..++-+... 
T Consensus      1272 lvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI--y~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI--YSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred             eeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE--EecC-hhhhcccccCcccc
Confidence            689999999999999984 222222322211 2 3899999999999999998 99999  6654 4555444433211 


Q ss_pred             -ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           77 -SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        77 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                       ....++.++                              +|||-.-+||.|+.|.+|.||--.+.+
T Consensus      1348 ~q~~gs~scL------------------------------~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQRIGSVSCL------------------------------AFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cCcCCCccee------------------------------eecchhHhhhhccCCceEEEeecCCcC
Confidence             011223333                              999998899999999999999866543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.57  E-value=2.6e-07  Score=49.02  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=29.1

Q ss_pred             eEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEE
Q 032092           23 KRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVH   57 (147)
Q Consensus        23 ~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~   57 (147)
                      ..+. .|..+|++|+|+|++++|++|+.|++|++|
T Consensus         5 ~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vw   38 (39)
T PF00400_consen    5 RTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVW   38 (39)
T ss_dssp             EEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEE
T ss_pred             EEEc-CCCCcEEEEEEecccccceeeCCCCEEEEE
Confidence            3443 466789999999999999999999999994

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.56  E-value=1.2e-05  Score=63.46  Aligned_cols=139  Identities=17%  Similarity=0.074  Sum_probs=77.6

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCCcceeEEEeccCC----
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKCHRDG----   76 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~h~~~----   76 (147)
                      .+++.||.|.++|+.+.+ .+.++...  ...+.+++||||++++++. .++.+.+  +|.++.+.+.++......    
T Consensus        52 yv~~rdg~vsviD~~~~~-~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v--~D~~tle~v~~I~~~~~~~~~~  126 (369)
T PF02239_consen   52 YVANRDGTVSVIDLATGK-VVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSV--IDAETLEPVKTIPTGGMPVDGP  126 (369)
T ss_dssp             EEEETTSEEEEEETTSSS-EEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEE--EETTT--EEEEEE--EE-TTTS
T ss_pred             EEEcCCCeEEEEECCccc-EEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeE--eccccccceeeccccccccccc
Confidence            456789999999999986 45566432  3468999999999988664 6999999  898888777766532110    


Q ss_pred             -ceE----EeeccceeeeecCC-Ccceeee--eeeeee-eee---eceEEEEEecCCCeEEEe-CCCCcEEEeecCCcee
Q 032092           77 -SET----CSVISFTSILAGDA-PKYSSFY--KVKRLH-LFV---KSHVIVLFVQIHHTFATA-GSDGAFNFWDKDSKQR  143 (147)
Q Consensus        77 -~~~----~~v~~~~~~~~~~~-~~~~~~~--~~~~~~-~~~---~~~~~~~fspdg~~latg-~~Dg~i~iWd~~~~~~  143 (147)
                       ...    .+...-..+..-.| +.++...  +.+... ..+   ..-.-..|.|++++|+.+ ..+..|-++|.++++.
T Consensus       127 ~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~  206 (369)
T PF02239_consen  127 ESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL  206 (369)
T ss_dssp             ---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             CCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence             000    00011111211111 1222221  111111 111   111236999999886554 5567899999999876


Q ss_pred             ee
Q 032092          144 LK  145 (147)
Q Consensus       144 ~~  145 (147)
                      +.
T Consensus       207 v~  208 (369)
T PF02239_consen  207 VA  208 (369)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.55  E-value=1.5e-06  Score=66.11  Aligned_cols=58  Identities=14%  Similarity=0.263  Sum_probs=46.2

Q ss_pred             CeEeecCC-eEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEEEee
Q 032092            1 MVVGTADR-NLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHL   59 (147)
Q Consensus         1 l~~gs~dg-~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~   59 (147)
                      |||||..| .|||||..+++.. ..+.. .....|.+|+||||+.+||++|..|+++|+.+
T Consensus       196 vATaStkGTLIRIFdt~~g~~l-~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  196 VATASTKGTLIRIFDTEDGTLL-QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             EEEeccCcEEEEEEEcCCCcEe-eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence            58999988 4699999999753 33332 23346999999999999999999999999443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.53  E-value=2.1e-07  Score=73.82  Aligned_cols=64  Identities=9%  Similarity=0.122  Sum_probs=51.3

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF   70 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~   70 (147)
                      +|...|+|.+|.-...+-+++.+  .|..+|++||+.|+|+++|+.+.|..++|  ||+|....+.++
T Consensus       268 ~GhsnGtVSlWSP~skePLvKiL--cH~g~V~siAv~~~G~YMaTtG~Dr~~kI--WDlR~~~ql~t~  331 (545)
T KOG1272|consen  268 LGHSNGTVSLWSPNSKEPLVKIL--CHRGPVSSIAVDRGGRYMATTGLDRKVKI--WDLRNFYQLHTY  331 (545)
T ss_pred             EcCCCceEEecCCCCcchHHHHH--hcCCCcceEEECCCCcEEeecccccceeE--eeecccccccee
Confidence            67889999999998876444433  25678999999999999999999999999  787765544443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=7.2e-07  Score=72.45  Aligned_cols=116  Identities=16%  Similarity=0.156  Sum_probs=78.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |..++....|+-+|+.+|.-+ ..+.. ....++++.++|....|++|+.+|.+..  ||++......++..-..     
T Consensus       148 ly~~gsg~evYRlNLEqGrfL-~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEf--wDpR~ksrv~~l~~~~~-----  218 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRFL-NPFET-DSGELNVVSINEEHGLLACGTEDGVVEF--WDPRDKSRVGTLDAASS-----  218 (703)
T ss_pred             EEEeecCcceEEEEccccccc-ccccc-ccccceeeeecCccceEEecccCceEEE--ecchhhhhheeeecccc-----
Confidence            345666778999999988521 11211 1246899999999999999999999998  89886555444432111     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                       |++.    .|.+              ..+..++++|+-+|-.++.|.++|.|.|+|++..+.+
T Consensus       219 -v~s~----pg~~--------------~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  219 -VNSH----PGGD--------------AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             -cCCC----cccc--------------ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence             1110    0000              0111234499999999999999999999999987665

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.51  E-value=3.4e-07  Score=74.09  Aligned_cols=75  Identities=20%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE-EeccCCceEEeeccceeeeecCCCcceeeeeeeeeee
Q 032092           29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHL  107 (147)
Q Consensus        29 ~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~-~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  107 (147)
                      |.+=|++|+|+.||..|++|+.|-.+.|  ||+...+++..+ ++|..     .+-+.                      
T Consensus        49 H~GCVN~LeWn~dG~lL~SGSDD~r~iv--Wd~~~~KllhsI~TgHta-----NIFsv----------------------   99 (758)
T KOG1310|consen   49 HTGCVNCLEWNADGELLASGSDDTRLIV--WDPFEYKLLHSISTGHTA-----NIFSV----------------------   99 (758)
T ss_pred             ccceecceeecCCCCEEeecCCcceEEe--ecchhcceeeeeeccccc-----ceeEE----------------------
Confidence            4455999999999999999999999999  888766665444 34543     23333                      


Q ss_pred             eeeceEEEEEecC--CCeEEEeCCCCcEEEeecCC
Q 032092          108 FVKSHVIVLFVQI--HHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus       108 ~~~~~~~~~fspd--g~~latg~~Dg~i~iWd~~~  140 (147)
                              .|-|-  .+.++||.+|..|+++|+..
T Consensus       100 --------KFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen  100 --------KFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             --------eeeccCCCeEEEeccCcceEEEEeccc
Confidence                    88883  37899999999999999974

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.51  E-value=4.9e-07  Score=67.41  Aligned_cols=110  Identities=15%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             CeEeecCCeEEEEECCCCcccee-----Ee---cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE-EE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFK-----RI---NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT-FK   71 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~-----~~---~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~-~~   71 (147)
                      |++|-++|.|.+||+.++.+.+.     ..   ...++.+|.++.+.+.-+.=++|+.+..+..|.++-.++..... +.
T Consensus       168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~  247 (323)
T KOG0322|consen  168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI  247 (323)
T ss_pred             EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence            46788899999999999743111     00   11245679999998876666888888888886666554432211 10


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      .-++.    .+..+                              ..-||++.|||+|=|+.||||.-++.+.+
T Consensus       248 ~lknp----Gv~gv------------------------------rIRpD~KIlATAGWD~RiRVyswrtl~pL  286 (323)
T KOG0322|consen  248 TLKNP----GVSGV------------------------------RIRPDGKILATAGWDHRIRVYSWRTLNPL  286 (323)
T ss_pred             EecCC----Cccce------------------------------EEccCCcEEeecccCCcEEEEEeccCCch
Confidence            00110    13333                              89999999999999999999999988765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.48  E-value=2e-06  Score=62.09  Aligned_cols=84  Identities=12%  Similarity=0.128  Sum_probs=54.6

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee---CCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI---EGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~---dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      ++|..++.|.+||++ ++ ++..+.   ..+++.|.|||+|+++++|+.   .|.+.+  ||.++.+.+.++........
T Consensus        77 i~g~~~~~v~lyd~~-~~-~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~--wd~~~~~~i~~~~~~~~t~~  149 (194)
T PF08662_consen   77 IYGSMPAKVTLYDVK-GK-KIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEF--WDVRKKKKISTFEHSDATDV  149 (194)
T ss_pred             EEccCCcccEEEcCc-cc-EeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEE--EECCCCEEeeccccCcEEEE
Confidence            345567899999997 33 333332   246789999999999998864   467999  77776666655542221223


Q ss_pred             EEeeccceeeeecC
Q 032092           79 TCSVISFTSILAGD   92 (147)
Q Consensus        79 ~~~v~~~~~~~~~~   92 (147)
                      .++++.-.++++..
T Consensus       150 ~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  150 EWSPDGRYLATATT  163 (194)
T ss_pred             EEcCCCCEEEEEEe
Confidence            56666655555544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.47  E-value=2.1e-06  Score=69.42  Aligned_cols=90  Identities=13%  Similarity=0.024  Sum_probs=56.7

Q ss_pred             cceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc-----eeeeecCCCcceeeeeeeee
Q 032092           31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF-----TSILAGDAPKYSSFYKVKRL  105 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~  105 (147)
                      +-|.++.|+|..+.+++|+.|-+.+|  ||.. |+.+++-..|.     ++++++     ...+.|+-.       ..|.
T Consensus       187 GiiL~~~W~~~s~lI~sgGED~kfKv--WD~~-G~~Lf~S~~~e-----y~ITSva~npd~~~~v~S~n-------t~R~  251 (737)
T KOG1524|consen  187 GLVLSLSWSTQSNIIASGGEDFRFKI--WDAQ-GANLFTSAAEE-----YAITSVAFNPEKDYLLWSYN-------TARF  251 (737)
T ss_pred             cEEEEeecCccccceeecCCceeEEe--eccc-CcccccCChhc-----cceeeeeeccccceeeeeee-------eeee
Confidence            34788889999999999999999998  7764 66665443333     344433     112222211       1121


Q ss_pred             ee-eeeceEEEEEecCCCeEEEeCCCCcEEE
Q 032092          106 HL-FVKSHVIVLFVQIHHTFATAGSDGAFNF  135 (147)
Q Consensus       106 ~~-~~~~~~~~~fspdg~~latg~~Dg~i~i  135 (147)
                      .. ..-..+.++|||||..++.|.+.|.+.+
T Consensus       252 ~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  252 SSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            11 1122456899999999999999997654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.44  E-value=2.7e-07  Score=77.58  Aligned_cols=54  Identities=13%  Similarity=0.197  Sum_probs=44.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeec
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD   60 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d   60 (147)
                      +|++|.|..|++|-++.+. |+..+. +|.+.|++|+|+|-.    +.+.||++++|||+
T Consensus       247 iaaaS~D~vIrvWrl~~~~-pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  247 IAAASNDKVIRVWRLPDGA-PVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             hhhcccCceEEEEecCCCc-hHHHHh-ccccceeeeccCccc----cCCCCCceEecccc
Confidence            4678999999999999985 555443 567789999999954    77899999997776

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.44  E-value=9.1e-07  Score=72.87  Aligned_cols=98  Identities=13%  Similarity=0.117  Sum_probs=67.3

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC--CcceeEEEeccCCceEEe
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ--QSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~--~~~~~~~~~h~~~~~~~~   81 (147)
                      +.|-+|+||.-.-...|....... ...+.++||||- ...|+++..||.+.|  ||+..  ..+..+.+-+.     ..
T Consensus       417 ~gDW~vriWs~~~~~~Pl~~~~~~-~~~v~~vaWSptrpavF~~~d~~G~l~i--WDLl~~~~~Pv~s~~~~~-----~~  488 (555)
T KOG1587|consen  417 VGDWTVRIWSEDVIASPLLSLDSS-PDYVTDVAWSPTRPAVFATVDGDGNLDI--WDLLQDDEEPVLSQKVCS-----PA  488 (555)
T ss_pred             eccceeEeccccCCCCcchhhhhc-cceeeeeEEcCcCceEEEEEcCCCceeh--hhhhccccCCcccccccc-----cc
Confidence            339999999987434454433322 235999999996 568999999999999  55542  23332222111     01


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .+.                              +.|+|.|+.|+.|...|++++|++.+
T Consensus       489 l~~------------------------------~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  489 LTR------------------------------VRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cce------------------------------eecCCCCcEEEEecCCCcEEEEEcCc
Confidence            122                              27888999999999999999999853

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=1.3e-06  Score=70.46  Aligned_cols=76  Identities=17%  Similarity=0.279  Sum_probs=52.8

Q ss_pred             eEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeece
Q 032092           33 MRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH  112 (147)
Q Consensus        33 i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (147)
                      +.-+..+|.+....++..|+.|++  +|..+++++.....|..     .++++                           
T Consensus       492 in~vVs~~~~~~~~~~hed~~Ir~--~dn~~~~~l~s~~a~~~-----svtsl---------------------------  537 (577)
T KOG0642|consen  492 INKVVSHPTADITFTAHEDRSIRF--FDNKTGKILHSMVAHKD-----SVTSL---------------------------  537 (577)
T ss_pred             cceEEecCCCCeeEecccCCceec--ccccccccchheeeccc-----eecce---------------------------
Confidence            344555555556666666666666  55555555555554543     24444                           


Q ss_pred             EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092          113 VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus       113 ~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                         ++-|.|.+|++|+.|+.+++|.+..+.++.
T Consensus       538 ---ai~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  538 ---AIDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             ---eecCCCceEEeecCCceeehhhccchheee
Confidence               999999999999999999999998777654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=1.9e-06  Score=66.74  Aligned_cols=100  Identities=12%  Similarity=0.170  Sum_probs=63.4

Q ss_pred             CeEeecCCeEEEEECCCCc---cc--------eeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCccee
Q 032092            1 MVVGTADRNLVVFNLQNPQ---TE--------FKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNF   68 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~---~~--------~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~   68 (147)
                      |++|+..| |.||.....-   .+        .+....+...+|++|+|.+||..+++++- |..|+|  ||+.++..+.
T Consensus       156 lavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~i--Wdpdtg~~~p  232 (445)
T KOG2139|consen  156 LAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMI--WDPDTGQKIP  232 (445)
T ss_pred             eeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEE--EcCCCCCccc
Confidence            46666644 8899864321   11        01112222357999999999999998765 677999  6665544321


Q ss_pred             EEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092           69 TFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        69 ~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                       +.--...    .+.-                              +.|||||.+|.++.-|+..++|+.
T Consensus       233 -L~~~glg----g~sl------------------------------LkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  233 -LIPKGLG----GFSL------------------------------LKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             -ccccCCC----ceee------------------------------EEEcCCCCEEEEecccceeeeehh
Confidence             1100000    1222                              399999999999999999999953

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=7.9e-06  Score=66.10  Aligned_cols=130  Identities=17%  Similarity=0.177  Sum_probs=80.4

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE--EeeCCeEEEEeecCCCCcceeEEE-eccCCceEEeecc
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV--GSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSETCSVIS   84 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~--g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~~~~~~v~~   84 (147)
                      .++++.+++.....+   .-...+||.++.|+|+|+-|++  |-+=-.+.|  +|.+ +..++.|. +-++. ..+....
T Consensus       251 q~Lyll~t~g~s~~V---~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti--fnlr-~~~v~df~egpRN~-~~fnp~g  323 (566)
T KOG2315|consen  251 QTLYLLATQGESVSV---PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI--FNLR-GKPVFDFPEGPRNT-AFFNPHG  323 (566)
T ss_pred             ceEEEEEecCceEEE---ecCCCCCceEEEECCCCCEEEEEEecccceEEE--EcCC-CCEeEeCCCCCccc-eEECCCC
Confidence            467778887332222   1123468999999999987764  677788888  7775 66666663 33332 2333444


Q ss_pred             ceeeeecCCC--c-ceeeeeee-eeeeeeece--EEEEEecCCCeEEEeCC------CCcEEEeecCCceeee
Q 032092           85 FTSILAGDAP--K-YSSFYKVK-RLHLFVKSH--VIVLFVQIHHTFATAGS------DGAFNFWDKDSKQRLK  145 (147)
Q Consensus        85 ~~~~~~~~~~--~-~~~~~~~~-~~~~~~~~~--~~~~fspdg~~latg~~------Dg~i~iWd~~~~~~~~  145 (147)
                      -.++++|-..  + +.+|+-.+ +....+.+-  +-+.|+|||++|.|+..      |..++||+. +|++++
T Consensus       324 ~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~  395 (566)
T KOG2315|consen  324 NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLH  395 (566)
T ss_pred             CEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceee
Confidence            3455554443  3 44444222 222233222  34799999999999876      788999997 555554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.41  E-value=1.4e-05  Score=63.32  Aligned_cols=131  Identities=14%  Similarity=0.075  Sum_probs=71.8

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCCCCcceeEEEeccCC--ceEEeecc
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKNFTFKCHRDG--SETCSVIS   84 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~~~~~~h~~~--~~~~~v~~   84 (147)
                      ..|++||+.+++.  ..+.. ....+.+++|+|||+.|+. .+.++...||.+|..++.. ..+..+...  ...+..+.
T Consensus       214 ~~i~v~d~~~g~~--~~~~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg  289 (417)
T TIGR02800       214 PEIYVQDLATGQR--EKVAS-FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDG  289 (417)
T ss_pred             cEEEEEECCCCCE--EEeec-CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCC
Confidence            4799999998743  12221 2234667899999998764 4555654444477765433 233333211  12333333


Q ss_pred             ceeeeecCCCcc-eeee-eeee--e-eeeeec--eEEEEEecCCCeEEEeCCCC---cEEEeecCCce
Q 032092           85 FTSILAGDAPKY-SSFY-KVKR--L-HLFVKS--HVIVLFVQIHHTFATAGSDG---AFNFWDKDSKQ  142 (147)
Q Consensus        85 ~~~~~~~~~~~~-~~~~-~~~~--~-~~~~~~--~~~~~fspdg~~latg~~Dg---~i~iWd~~~~~  142 (147)
                      -.++..+..... .++. ++..  . .....+  ...++|+|||++|+.++.++   .|.+||+.++.
T Consensus       290 ~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       290 KSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            333333333221 2211 2211  1 111122  24679999999888887776   79999987753

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=9.5e-07  Score=71.77  Aligned_cols=106  Identities=12%  Similarity=0.191  Sum_probs=74.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCC-----C-----CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSP-----L-----KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF   70 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~-----~-----~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~   70 (147)
                      |++|+.+|.|..||.|..+. +.++..+     +     ...|++++|+.||-.+++|+.+|.+.|  +|+++.+++. .
T Consensus       190 la~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i--yDLRa~~pl~-~  265 (703)
T KOG2321|consen  190 LACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI--YDLRASKPLL-V  265 (703)
T ss_pred             EEecccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEE--EEcccCCcee-e
Confidence            57788899999999998643 2222211     1     123899999999999999999999999  7887666643 2


Q ss_pred             EeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC--CCeEEEeCCCCcEEEeecCCceee
Q 032092           71 KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI--HHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        71 ~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd--g~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      +.|...   .++..+                              .|-+.  ++.++|.. ...++|||-.+++..
T Consensus       266 kdh~~e---~pi~~l------------------------------~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~  307 (703)
T KOG2321|consen  266 KDHGYE---LPIKKL------------------------------DWQDTDQQNKVVSMD-KRILKIWDECTGKPM  307 (703)
T ss_pred             cccCCc---cceeee------------------------------cccccCCCceEEecc-hHHhhhcccccCCce
Confidence            345432   345444                              78775  46677642 357899999888764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.37  E-value=1e-05  Score=64.78  Aligned_cols=104  Identities=23%  Similarity=0.256  Sum_probs=76.2

Q ss_pred             CeEeecCC-eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADR-NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg-~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      ++.|..|| .+-|||.++++  +++++.+. ..|.+++.+|||+.++++.....+.+  +|+.+++....-+     ...
T Consensus       374 ~vigt~dgD~l~iyd~~~~e--~kr~e~~l-g~I~av~vs~dGK~~vvaNdr~el~v--ididngnv~~idk-----S~~  443 (668)
T COG4946         374 DVIGTNDGDKLGIYDKDGGE--VKRIEKDL-GNIEAVKVSPDGKKVVVANDRFELWV--IDIDNGNVRLIDK-----SEY  443 (668)
T ss_pred             eEEeccCCceEEEEecCCce--EEEeeCCc-cceEEEEEcCCCcEEEEEcCceEEEE--EEecCCCeeEecc-----ccc
Confidence            46788899 99999999985  34555433 46999999999999999998877766  7776665432111     111


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC----cEEEeecCCceee
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG----AFNFWDKDSKQRL  144 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg----~i~iWd~~~~~~~  144 (147)
                      .-+...                              +|||++++||-+--+|    .|+++|+..++..
T Consensus       444 ~lItdf------------------------------~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         444 GLITDF------------------------------DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             ceeEEE------------------------------EEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            123344                              9999999999887665    7999999887754

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.37  E-value=8.2e-06  Score=62.76  Aligned_cols=140  Identities=13%  Similarity=0.137  Sum_probs=79.1

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCE-EEEEeeCCeEEEEeecCCCCccee-------EEEecc
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQG-FWVGSIEGRVGVHHLDDSQQSKNF-------TFKCHR   74 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~-l~~g~~dg~i~i~~~d~~~~~~~~-------~~~~h~   74 (147)
                      .+..++.|++|++.+++= .-.++. ...++.++.|||||+. |.+..-|-+|.+|......+-.+.       .+.-|+
T Consensus        66 ~~yk~~~vqvwsl~Qpew-~ckIde-g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~  143 (447)
T KOG4497|consen   66 VAYKDPKVQVWSLVQPEW-YCKIDE-GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP  143 (447)
T ss_pred             eeeccceEEEEEeeccee-EEEecc-CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC
Confidence            456789999999998753 223443 2346899999999965 556677999999766654321111       111122


Q ss_pred             CCce-------------------------EEeecccee--eeecCCCcceeee--eeeeeee--e-eeceEEEEEecCCC
Q 032092           75 DGSE-------------------------TCSVISFTS--ILAGDAPKYSSFY--KVKRLHL--F-VKSHVIVLFVQIHH  122 (147)
Q Consensus        75 ~~~~-------------------------~~~v~~~~~--~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~~~fspdg~  122 (147)
                      ....                         .+.+..+++  +-.+.|+.....+  .|+....  . .-|...++|+|.++
T Consensus       144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~q  223 (447)
T KOG4497|consen  144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQ  223 (447)
T ss_pred             CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccc
Confidence            1100                         001111100  2223333222222  1221111  1 13455689999999


Q ss_pred             eEEEeCCCCcEEEeecCCceee
Q 032092          123 TFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus       123 ~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      +||.|++|+.+|+-|--+-+.+
T Consensus       224 flavGsyD~~lrvlnh~tWk~f  245 (447)
T KOG4497|consen  224 FLAVGSYDQMLRVLNHFTWKPF  245 (447)
T ss_pred             eEEeeccchhhhhhceeeeeeh
Confidence            9999999999999876554443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=7.5e-06  Score=65.72  Aligned_cols=97  Identities=10%  Similarity=0.050  Sum_probs=62.0

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF   85 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~   85 (147)
                      +..|.+||+.+++.  ..+. .....+.+.+|||||+.|+ +.+.+|...||.+|..++.. ..+..+..     ...+.
T Consensus       225 ~~~i~~~dl~~g~~--~~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~-----~~~~~  295 (435)
T PRK05137        225 RPRVYLLDLETGQR--ELVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPA-----IDTSP  295 (435)
T ss_pred             CCEEEEEECCCCcE--EEee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCC-----ccCce
Confidence            46899999998753  2232 2233567889999999876 55667776666578765433 33433221     12223


Q ss_pred             eeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CC--cEEEeecCCce
Q 032092           86 TSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DG--AFNFWDKDSKQ  142 (147)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg--~i~iWd~~~~~  142 (147)
                                                    +|+|||+.|+..+. +|  .|++||+.+++
T Consensus       296 ------------------------------~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        296 ------------------------------SYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             ------------------------------eEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence                                          89999987776553 33  68888876653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=1.2e-05  Score=64.46  Aligned_cols=101  Identities=15%  Similarity=0.073  Sum_probs=61.7

Q ss_pred             eecCC--eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            4 GTADR--NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         4 gs~dg--~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      .+.+|  .|++||+.+++.  ..+.. +.....+.+|+|||+.|+..+. +|...||.+|..+++. ..+..+..     
T Consensus       266 ~s~~g~~~Iy~~d~~~g~~--~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~-----  336 (433)
T PRK04922        266 LSRDGNPEIYVMDLGSRQL--TRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGN-----  336 (433)
T ss_pred             EeCCCCceEEEEECCCCCe--EECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCC-----
Confidence            34444  699999988753  23322 2223467899999999887664 5665565577654432 22221111     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC---cEEEeecCCcee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG---AFNFWDKDSKQR  143 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg---~i~iWd~~~~~~  143 (147)
                      .....                              +|||||+.|+..+.++   .|.+||+.+++.
T Consensus       337 ~~~~~------------------------------~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~  372 (433)
T PRK04922        337 YNARA------------------------------SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV  372 (433)
T ss_pred             CccCE------------------------------EECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence            01123                              9999998887654433   699999977654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=1.4e-05  Score=64.12  Aligned_cols=95  Identities=13%  Similarity=0.049  Sum_probs=61.0

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee---CCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI---EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~---dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      ..|.++|..... + +.+. .+...+.+.+|||||+.|+..+.   +..|.+  ||+.+++. ..+..+..     .+..
T Consensus       182 ~~l~~~d~dg~~-~-~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~--~dl~~g~~-~~l~~~~g-----~~~~  250 (435)
T PRK05137        182 KRLAIMDQDGAN-V-RYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYL--LDLETGQR-ELVGNFPG-----MTFA  250 (435)
T ss_pred             eEEEEECCCCCC-c-EEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEE--EECCCCcE-EEeecCCC-----cccC
Confidence            478899986543 2 2333 23457899999999999887664   356777  77765543 22332221     1223


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCCc--EEEeecCCcee
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDGA--FNFWDKDSKQR  143 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg~--i~iWd~~~~~~  143 (147)
                      .                              +|+|||+.|+ +.+.++.  |++||+++++.
T Consensus       251 ~------------------------------~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~  282 (435)
T PRK05137        251 P------------------------------RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT  282 (435)
T ss_pred             c------------------------------EECCCCCEEEEEEecCCCceEEEEECCCCce
Confidence            3                              9999997665 5555554  88889877654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.32  E-value=1e-05  Score=64.98  Aligned_cols=57  Identities=19%  Similarity=0.199  Sum_probs=36.4

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE-eeCCeEEEEeecCCCCcc
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG-SIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g-~~dg~i~i~~~d~~~~~~   66 (147)
                      +..|.+||+.+++.  ..+.. ....+.+.+|||||+.|+.. +.+|...||-||..+++.
T Consensus       222 ~~~i~i~dl~~G~~--~~l~~-~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~  279 (429)
T PRK03629        222 RSALVIQTLANGAV--RQVAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI  279 (429)
T ss_pred             CcEEEEEECCCCCe--EEccC-CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            45799999988753  22221 12235678999999988864 456654444478765543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.32  E-value=4.4e-06  Score=67.66  Aligned_cols=69  Identities=19%  Similarity=0.160  Sum_probs=55.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      |-+++.|+.+..|+.+..+. +.... ..+..+.+++++|||+.+++++  ++|.+  ||..+.+.+.+|+||..
T Consensus       117 iyS~~ad~~v~~~~~~~~~~-~~~~~-~~~~~~~sl~is~D~~~l~~as--~~ik~--~~~~~kevv~~ftgh~s  185 (541)
T KOG4547|consen  117 IYSVGADLKVVYILEKEKVI-IRIWK-EQKPLVSSLCISPDGKILLTAS--RQIKV--LDIETKEVVITFTGHGS  185 (541)
T ss_pred             eEecCCceeEEEEeccccee-eeeec-cCCCccceEEEcCCCCEEEecc--ceEEE--EEccCceEEEEecCCCc
Confidence            35788999999999998742 22222 2233578999999999999988  78999  88888999999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.30  E-value=1.6e-05  Score=63.84  Aligned_cols=96  Identities=16%  Similarity=0.072  Sum_probs=61.3

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEEeecccee
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTS   87 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~   87 (147)
                      .|++||+.+++.  ..+.. ....+...+|+|||+.|+..+. +|...||.+|...+.. ..+..+..     .....  
T Consensus       268 ~I~~~d~~tg~~--~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~-----~~~~~--  336 (429)
T PRK03629        268 NLYVMDLASGQI--RQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGS-----QNQDA--  336 (429)
T ss_pred             EEEEEECCCCCE--EEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCC-----CccCE--
Confidence            588999988742  23332 2234678999999999887665 4566776677765432 22321111     11223  


Q ss_pred             eeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCC---CcEEEeecCCcee
Q 032092           88 ILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSD---GAFNFWDKDSKQR  143 (147)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~D---g~i~iWd~~~~~~  143 (147)
                                                  +|+|||++|+..+.+   ..|.+||+++++.
T Consensus       337 ----------------------------~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~  367 (429)
T PRK03629        337 ----------------------------DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  367 (429)
T ss_pred             ----------------------------EECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence                                        899999888776543   3588999887653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.27  E-value=6.5e-07  Score=80.31  Aligned_cols=95  Identities=21%  Similarity=0.330  Sum_probs=72.6

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      ++++.+.+||..-.... ..+...|...++++++-|..+.|++|+.+|.|.+  ||+++.+...+++             
T Consensus      2312 ~d~~n~~lwDtl~~~~~-s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l--~D~rqrql~h~~~------------- 2375 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMN-SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL--FDIRQRQLRHTFQ------------- 2375 (2439)
T ss_pred             CCCCcccchhcccCccc-ceeeeecCCCceEEEEcCcceEEEecCCcCcEEE--eehHHHHHHHHhh-------------
Confidence            56789999997653221 1122345567999999999999999999999999  8888666654443             


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                                                     ++. ...+|.+|++.|.|+||++.+..++++|
T Consensus      2376 -------------------------------~~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2376 -------------------------------ALD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             -------------------------------hhh-hhheeeccCcccceEEEEccccchhhcC
Confidence                                           222 3368999999999999999998888876

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.24  E-value=8e-06  Score=69.91  Aligned_cols=106  Identities=18%  Similarity=0.261  Sum_probs=75.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCc---ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKY---QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~---~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~   77 (147)
                      ++.++.++.+-|||....... ..+....+.   +..-+.++++.-++++|+.-|.|.+|.+.. +..+ ..+.+|..  
T Consensus       102 i~l~~~~ns~~i~d~~~~~~~-~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~-dn~p-~~l~GHeG--  176 (967)
T KOG0974|consen  102 IALVTSRNSLLIRDSKNSSVL-SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE-DNKP-IRLKGHEG--  176 (967)
T ss_pred             EEEEEcCceEEEEecccCcee-hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc-cCCc-ceecccCC--
Confidence            467788899999999987532 223222222   233355688888999999999999965552 2223 25677765  


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                         .+-++                              .|+-||++++|.|.|.++|+|++++++.+
T Consensus       177 ---~iF~i------------------------------~~s~dg~~i~s~SdDRsiRlW~i~s~~~~  210 (967)
T KOG0974|consen  177 ---SIFSI------------------------------VTSLDGRYIASVSDDRSIRLWPIDSREVL  210 (967)
T ss_pred             ---ceEEE------------------------------EEccCCcEEEEEecCcceeeeeccccccc
Confidence               23344                              99999999999999999999999988754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.22  E-value=8.5e-06  Score=68.60  Aligned_cols=102  Identities=13%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             CeEeecCCeEEEEECCC--CccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQN--PQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~--~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      +|+|..||.|.+|.--.  ......+.-.=|..+|.+++|++||.+|.+|+.+|-+.+  |-..++++  +|. .+..  
T Consensus       220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~--Wq~~T~~k--qfL-PRLg--  292 (792)
T KOG1963|consen  220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL--WQLETGKK--QFL-PRLG--  292 (792)
T ss_pred             EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEE--EeecCCCc--ccc-cccC--
Confidence            57888999999996443  222111221112247999999999999999999999999  44444442  221 1111  


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                       .++..+                              ++|||+.+.+....|..|.+-.+-+
T Consensus       293 -s~I~~i------------------------------~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  293 -SPILHI------------------------------VVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             -CeeEEE------------------------------EEcCCCCeEEEEecCceEEEEeccc
Confidence             134444                              9999999989888999999887643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=1.4e-05  Score=62.33  Aligned_cols=108  Identities=14%  Similarity=0.154  Sum_probs=77.8

Q ss_pred             eEeecC--CeEEEEECCCCccceeEecCCC-----C--cceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCCc-ceeE
Q 032092            2 VVGTAD--RNLVVFNLQNPQTEFKRINSPL-----K--YQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQS-KNFT   69 (147)
Q Consensus         2 ~~gs~d--g~v~iwdi~~~~~~~~~~~~~~-----~--~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~~-~~~~   69 (147)
                      |+|+..  ..++|||+.+.++.+.-..-+.     .  ..++++.|-|.  ...||+++--+++++  +|++.++ +...
T Consensus       165 a~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~--YDt~~qRRPV~~  242 (412)
T KOG3881|consen  165 ATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRL--YDTRHQRRPVAQ  242 (412)
T ss_pred             ecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEE--ecCcccCcceeE
Confidence            567777  7899999998854322111111     1  23678889887  789999999999999  8998654 4444


Q ss_pred             EEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           70 FKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        70 ~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      |.--.     .++.++                              ...|+|+.+++|..-|.+..+|++.++.+..
T Consensus       243 fd~~E-----~~is~~------------------------------~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  243 FDFLE-----NPISST------------------------------GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             ecccc-----Ccceee------------------------------eecCCCcEEEEecccchhheecccCceeecc
Confidence            42111     134444                              8889999999999999999999999887643

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.18  E-value=2.3e-06  Score=63.83  Aligned_cols=72  Identities=19%  Similarity=0.348  Sum_probs=54.4

Q ss_pred             ceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcc-eeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeee
Q 032092           32 QMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFV  109 (147)
Q Consensus        32 ~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~-~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (147)
                      .|.+++-+|.. ..+++|+.||.+.+||+  ++... .-.++.|+.     +++.+                        
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~--rn~~~p~S~l~ahk~-----~i~eV------------------------  229 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDA--RNVAMPVSLLKAHKA-----EIWEV------------------------  229 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEc--ccccchHHHHHHhhh-----hhhhe------------------------
Confidence            48899999964 56789999999999555  44332 234556664     46666                        


Q ss_pred             eceEEEEEecC-CCeEEEeCCCCcEEEeecCC
Q 032092          110 KSHVIVLFVQI-HHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus       110 ~~~~~~~fspd-g~~latg~~Dg~i~iWd~~~  140 (147)
                            -|||. +..|.|++.||.+.-||..+
T Consensus       230 ------~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  230 ------HFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ------eccCCCchheeEecCCCcEEEEcCCC
Confidence                  89995 47899999999999999864

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.18  E-value=1.3e-05  Score=60.74  Aligned_cols=108  Identities=15%  Similarity=0.117  Sum_probs=66.1

Q ss_pred             eEeecCCeEEEEECCCCccc-eeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            2 VVGTADRNLVVFNLQNPQTE-FKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~-~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      +++-.+|.+.+-+...+... ++.. .+|+++....+|+.. .+.+.+|+.||.++.  ||.|-.+   ++--|....+.
T Consensus       137 ~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~pnlvytGgDD~~l~~--~D~R~p~---~~i~~n~kvH~  210 (339)
T KOG0280|consen  137 FVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSC--WDIRIPK---TFIWHNSKVHT  210 (339)
T ss_pred             EEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCCCceEEecCCCceEEE--EEecCCc---ceeeecceeee
Confidence            45556677775554443211 1122 256677888888764 578889999999999  7776211   22112221111


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEec-CCCeEEEeCCCCcEEEeecCC-ceeee
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQ-IHHTFATAGSDGAFNFWDKDS-KQRLK  145 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsp-dg~~latg~~Dg~i~iWd~~~-~~~~~  145 (147)
                      ..|.++                              .-+| .+.++|||+.|-.|++||++. ++.++
T Consensus       211 ~GV~SI------------------------------~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  211 SGVVSI------------------------------YSSPPKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             cceEEE------------------------------ecCCCCCceEEEeccccceeeeehhcccCccc
Confidence            123333                              4444 678999999999999999984 55553

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.17  E-value=1.6e-05  Score=63.86  Aligned_cols=95  Identities=20%  Similarity=0.086  Sum_probs=59.6

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC---CeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE---GRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d---g~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      ..|.+||....+ + +.+.. +...+.+.+|+|||+.|+..+.+   ..|.+  +|..+++.. .+..+..     ....
T Consensus       184 ~~l~i~D~~g~~-~-~~lt~-~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~--~dl~~g~~~-~l~~~~g-----~~~~  252 (433)
T PRK04922        184 YALQVADSDGYN-P-QTILR-SAEPILSPAWSPDGKKLAYVSFERGRSAIYV--QDLATGQRE-LVASFRG-----INGA  252 (433)
T ss_pred             EEEEEECCCCCC-c-eEeec-CCCccccccCCCCCCEEEEEecCCCCcEEEE--EECCCCCEE-EeccCCC-----CccC
Confidence            468899986543 2 23332 33468899999999999987643   35766  666554432 2221111     1122


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCC--cEEEeecCCcee
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDG--AFNFWDKDSKQR  143 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg--~i~iWd~~~~~~  143 (147)
                      .                              +|+|||+.|+ +.+.+|  .|++||+.+++.
T Consensus       253 ~------------------------------~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~  284 (433)
T PRK04922        253 P------------------------------SFSPDGRRLALTLSRDGNPEIYVMDLGSRQL  284 (433)
T ss_pred             c------------------------------eECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence            3                              9999997664 545555  599999987754

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=1.1e-05  Score=65.99  Aligned_cols=42  Identities=17%  Similarity=0.105  Sum_probs=37.4

Q ss_pred             CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092           28 PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus        28 ~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      .|...|++|+..|.|..||+|+.||+++|  |.+.+|+.+.++.
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGsdDGtvri--WEi~TgRcvr~~~  439 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGSDDGTVRI--WEIATGRCVRTVQ  439 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecCCCCcEEE--EEeecceEEEEEe
Confidence            56677999999999999999999999999  8888888887764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.06  E-value=0.00048  Score=50.18  Aligned_cols=142  Identities=14%  Similarity=0.111  Sum_probs=80.6

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCC--CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSP--LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--   77 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~--~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--   77 (147)
                      ++++.++.++.+|.++++..-+.....  ...-....+...+++.++++..+|.+..  +|+++|+.+..+.......  
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVA--LDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEE--EETTTTEEEEEEESSTT-SS-
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEE--EecCCCcEEEEeecCCCCCCc
Confidence            456788899999999997543312211  1011223333344889999998999998  9999999988876643211  


Q ss_pred             --------eEEeecc-ceeeeecCCCcceeeeeee--eeeeeeece-EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           78 --------ETCSVIS-FTSILAGDAPKYSSFYKVK--RLHLFVKSH-VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        78 --------~~~~v~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                              ...++.. -.++.++.+..+..+ +++  +..+..+-+ ......+++..|+.++.|+.+..||+++++.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  158 PISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             -EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             ceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence                    0111111 112222222221111 211  111222211 111256777777777799999999999999987


Q ss_pred             c
Q 032092          146 V  146 (147)
Q Consensus       146 ~  146 (147)
                      +
T Consensus       237 ~  237 (238)
T PF13360_consen  237 Q  237 (238)
T ss_dssp             E
T ss_pred             E
Confidence            5

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.05  E-value=0.00012  Score=55.11  Aligned_cols=104  Identities=13%  Similarity=0.064  Sum_probs=68.1

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      ..++.|.++++.++.-+...+. ...+. ..+.+++++||++.+++-+...+|..+.+|...-..+.+....+       
T Consensus       132 ~i~sndht~k~~~~~~~s~~~~-~h~~~-~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-------  202 (344)
T KOG4532|consen  132 NIASNDHTGKTMVVSGDSNKFA-VHNQN-LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-------  202 (344)
T ss_pred             eeccCCcceeEEEEecCcccce-eeccc-cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-------
Confidence            4567788888888765532111 11111 23789999999999999888899988666654322222222111       


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                        +.        .                 =+..+|+.....||++..||++.|||++..
T Consensus       203 --~D--------~-----------------gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  203 --SD--------H-----------------GFYNSFSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             --CC--------C-----------------ceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence              11        0                 012388888889999999999999998753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.04  E-value=0.00014  Score=57.16  Aligned_cols=103  Identities=12%  Similarity=0.008  Sum_probs=70.4

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee----------CCeEEEEeecCCCCcceeEEEeccC-C
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI----------EGRVGVHHLDDSQQSKNFTFKCHRD-G   76 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~----------dg~i~i~~~d~~~~~~~~~~~~h~~-~   76 (147)
                      ++|.+.|..+++. ..++..+. .+ +-+ +||||+.+.++..          ++.|.+  ||+.+.+...++..-.. +
T Consensus        27 ~~v~ViD~~~~~v-~g~i~~G~-~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v--~D~~t~~~~~~i~~p~~p~  100 (352)
T TIGR02658        27 TQVYTIDGEAGRV-LGMTDGGF-LP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEV--IDPQTHLPIADIELPEGPR  100 (352)
T ss_pred             ceEEEEECCCCEE-EEEEEccC-CC-cee-ECCCCCEEEEEeccccccccCCCCCEEEE--EECccCcEEeEEccCCCch
Confidence            8999999999853 34554322 22 345 9999998776655          888999  89988877766642111 0


Q ss_pred             ceEE-eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-C-CCcEEEeecCCceeeec
Q 032092           77 SETC-SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-S-DGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        77 ~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~-Dg~i~iWd~~~~~~~~~  146 (147)
                      .... ....                              ++++|||++|+... . +..|-+.|+.+++.+.+
T Consensus       101 ~~~~~~~~~------------------------------~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e  143 (352)
T TIGR02658       101 FLVGTYPWM------------------------------TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM  143 (352)
T ss_pred             hhccCccce------------------------------EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE
Confidence            0000 0111                              29999999888766 3 78999999999998865

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.04  E-value=6.5e-06  Score=65.82  Aligned_cols=111  Identities=14%  Similarity=0.221  Sum_probs=75.3

Q ss_pred             CeEeecCCeEEEEECCCCccc-----eeEecC-----CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC--CC----
Q 032092            1 MVVGTADRNLVVFNLQNPQTE-----FKRINS-----PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS--QQ----   64 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~-----~~~~~~-----~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~--~~----   64 (147)
                      +++|+.|--+++||.++-.+.     ++.+..     .....|++++++.++.-|.++..|-.|++  +...  .|    
T Consensus       297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL--F~~~~~~G~~p~  374 (559)
T KOG1334|consen  297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL--FNKSMGDGSEPD  374 (559)
T ss_pred             cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE--eccccccCCCCC
Confidence            478899999999999875431     111111     11235999999988887888888989988  5432  22    


Q ss_pred             ------ccee-EEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092           65 ------SKNF-TFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus        65 ------~~~~-~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd  137 (147)
                            .... .|+||++....-.++                                =|-|...++.+|+.=|.|.||+
T Consensus       375 ~~s~~~~~~k~vYKGHrN~~TVKgVN--------------------------------FfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  375 PSSPREQYVKRVYKGHRNSRTVKGVN--------------------------------FFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             CCcchhhccchhhcccccccccceee--------------------------------eccCccceEEecCccceEEEEe
Confidence                  1222 267887642211111                                4678889999998889999999


Q ss_pred             cCCceeee
Q 032092          138 KDSKQRLK  145 (147)
Q Consensus       138 ~~~~~~~~  145 (147)
                      -+++++|.
T Consensus       423 K~t~eii~  430 (559)
T KOG1334|consen  423 KKTGEIIR  430 (559)
T ss_pred             cchhHHHH
Confidence            98887653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.03  E-value=0.00012  Score=59.11  Aligned_cols=95  Identities=12%  Similarity=0.064  Sum_probs=57.0

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecccee
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTS   87 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~   87 (147)
                      .|.+||+.+++.  ..+.. ........+|||||+.|+. .+.+|...||.+|..+++. ..+..+..     .....  
T Consensus       243 ~L~~~dl~tg~~--~~lt~-~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~-----~~~~p--  311 (448)
T PRK04792        243 EIFVQDIYTQVR--EKVTS-FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRA-----IDTEP--  311 (448)
T ss_pred             EEEEEECCCCCe--EEecC-CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCC-----Cccce--
Confidence            688999988753  22321 1223457899999998875 5667876666688765543 22322221     11222  


Q ss_pred             eeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CC--cEEEeecCCce
Q 032092           88 ILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DG--AFNFWDKDSKQ  142 (147)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg--~i~iWd~~~~~  142 (147)
                                                  +|+|||+.|+..+. ++  .|+++|+++++
T Consensus       312 ----------------------------~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        312 ----------------------------SWHPDGKSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             ----------------------------EECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence                                        89999977655433 33  46667776654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.02  E-value=3.9e-05  Score=60.34  Aligned_cols=106  Identities=10%  Similarity=0.156  Sum_probs=74.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      |.+|..+++|-+.|+.+.+. +..... .....|.-+..+|..+.||+.+.+|.|.+  ||.+.......+.+..+... 
T Consensus       120 ~~SG~~~~~VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~--~D~Rd~~~~~~~~~~AN~~~-  195 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQS-IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSF--IDNRDRQNPISLVLPANSGK-  195 (609)
T ss_pred             EecCCCcceeEeeeccccee-eeeecccCcccceeecccCCCCceEEEEecCceEEE--EeccCCCCCCceeeecCCCc-
Confidence            46788999999999998753 222221 12346899999999999999999999999  77765332222222222111 


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~  141 (147)
                       ...                              ++-|+|.. .+|++.+.-+-+.+||.+..
T Consensus       196 -~F~------------------------------t~~F~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  196 -NFY------------------------------TAEFHPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             -cce------------------------------eeeecCCCceeEEeccccCCCCceeeccc
Confidence             112                              23899977 78999999999999998754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.00  E-value=0.00012  Score=58.84  Aligned_cols=76  Identities=9%  Similarity=-0.027  Sum_probs=47.3

Q ss_pred             eEEEEEccCCCEEEEEe-eCCeEEEEeecCCC-CcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeee
Q 032092           33 MRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQ-QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVK  110 (147)
Q Consensus        33 i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~-~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (147)
                      ....+|||||+.|+..+ .+|...||.++... +.....+..+..     .+...                         
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-----~~~~p-------------------------  332 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-----NSSCP-------------------------  332 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-----Cccce-------------------------
Confidence            35679999999888665 46766676565532 222222222211     12223                         


Q ss_pred             ceEEEEEecCCCeEEEeCCC---CcEEEeecCCcee
Q 032092          111 SHVIVLFVQIHHTFATAGSD---GAFNFWDKDSKQR  143 (147)
Q Consensus       111 ~~~~~~fspdg~~latg~~D---g~i~iWd~~~~~~  143 (147)
                           +|||||+.|+..+.+   ..|.+||+.+++.
T Consensus       333 -----~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        333 -----AWSPDGKKIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             -----eECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence                 999999888765443   3699999987754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.00  E-value=0.00015  Score=57.46  Aligned_cols=96  Identities=20%  Similarity=0.127  Sum_probs=58.9

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC---CeEEEEeecCCCCcceeEEEeccCCceEEeec
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE---GRVGVHHLDDSQQSKNFTFKCHRDGSETCSVI   83 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d---g~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~   83 (147)
                      ...|.++|....+ + +.+.. +...+.+.+|+|||+.++..+.+   ..|.+  ||+.+++.. .+..+..     ...
T Consensus       169 ~~~l~~~d~~g~~-~-~~l~~-~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v--~d~~~g~~~-~~~~~~~-----~~~  237 (417)
T TIGR02800       169 RYELQVADYDGAN-P-QTITR-SREPILSPAWSPDGQKLAYVSFESGKPEIYV--QDLATGQRE-KVASFPG-----MNG  237 (417)
T ss_pred             cceEEEEcCCCCC-C-EEeec-CCCceecccCCCCCCEEEEEEcCCCCcEEEE--EECCCCCEE-EeecCCC-----Ccc
Confidence            3468888886443 2 23332 23357888999999999887654   36766  777655432 2222211     122


Q ss_pred             cceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCC--cEEEeecCCcee
Q 032092           84 SFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDG--AFNFWDKDSKQR  143 (147)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg--~i~iWd~~~~~~  143 (147)
                      ..                              +|+|||+.|+ +.+.++  .|++||+.+++.
T Consensus       238 ~~------------------------------~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~  270 (417)
T TIGR02800       238 AP------------------------------AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL  270 (417)
T ss_pred             ce------------------------------EECCCCCEEEEEECCCCCccEEEEECCCCCE
Confidence            23                              9999997665 444444  599999877643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.99  E-value=9.6e-05  Score=59.10  Aligned_cols=94  Identities=14%  Similarity=0.046  Sum_probs=57.0

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC-C--eEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE-G--RVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF   85 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d-g--~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~   85 (147)
                      .|.++|....+ + +.+.. +..++.+.+|||||+.|+..+.+ +  .|.+  +|+.+++.. .+.....     .....
T Consensus       180 ~l~~~d~~g~~-~-~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~--~~l~~g~~~-~l~~~~g-----~~~~~  248 (430)
T PRK00178        180 TLQRSDYDGAR-A-VTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFV--QNLDTGRRE-QITNFEG-----LNGAP  248 (430)
T ss_pred             EEEEECCCCCC-c-eEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEE--EECCCCCEE-EccCCCC-----CcCCe
Confidence            47778887543 2 23322 23467899999999999876543 3  4555  676655432 1211110     11123


Q ss_pred             eeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCC--cEEEeecCCcee
Q 032092           86 TSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDG--AFNFWDKDSKQR  143 (147)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg--~i~iWd~~~~~~  143 (147)
                                                    +|+|||+.|+ +...+|  .|++||+++++.
T Consensus       249 ------------------------------~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~  279 (430)
T PRK00178        249 ------------------------------AWSPDGSKLAFVLSKDGNPEIYVMDLASRQL  279 (430)
T ss_pred             ------------------------------EECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence                                          9999998776 554455  688889987654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.98  E-value=2.6e-05  Score=58.24  Aligned_cols=60  Identities=20%  Similarity=0.257  Sum_probs=48.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~   63 (147)
                      +++|++||.+-|||.|+...|... ...|+.+|..+-|+|. ++.|.+++.||.+  |.||..+
T Consensus       195 v~cgt~dg~~~l~d~rn~~~p~S~-l~ahk~~i~eV~FHpk~p~~Lft~sedGsl--w~wdas~  255 (319)
T KOG4714|consen  195 VCCGTDDGIVGLWDARNVAMPVSL-LKAHKAEIWEVHFHPKNPEHLFTCSEDGSL--WHWDAST  255 (319)
T ss_pred             EEEecCCCeEEEEEcccccchHHH-HHHhhhhhhheeccCCCchheeEecCCCcE--EEEcCCC
Confidence            368899999999999998655433 3357778999999994 8899999999998  5588763

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.98  E-value=0.00017  Score=57.71  Aligned_cols=97  Identities=13%  Similarity=0.066  Sum_probs=57.0

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccce
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFT   86 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~   86 (147)
                      ..|.+||+.+++.  +.+.. ....+...+|||||+.|+. .+.+|.-.||-+|..+++. ..+..+..     ...+. 
T Consensus       223 ~~l~~~~l~~g~~--~~l~~-~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~-----~~~~~-  292 (430)
T PRK00178        223 PRIFVQNLDTGRR--EQITN-FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPA-----IDTEP-  292 (430)
T ss_pred             CEEEEEECCCCCE--EEccC-CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCC-----CcCCe-
Confidence            3688999988753  22221 2233557899999998874 4556654444478765543 23332221     11222 


Q ss_pred             eeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-CCC--cEEEeecCCcee
Q 032092           87 SILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-SDG--AFNFWDKDSKQR  143 (147)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~Dg--~i~iWd~~~~~~  143 (147)
                                                   .|+|||+.|+-.+ .+|  .|+++|+.+++.
T Consensus       293 -----------------------------~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        293 -----------------------------FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             -----------------------------EECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence                                         8999997665443 333  577778766643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.97  E-value=0.00011  Score=55.82  Aligned_cols=64  Identities=19%  Similarity=0.241  Sum_probs=46.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEe-cCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCC-Ccce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRI-NSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQ-QSKN   67 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~-~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~-~~~~   67 (147)
                      +.+|++|+.+.-||+|.++. +-.. ..-|...|-||.-+| ++.++++|+-|..|++  ||+|+ ++++
T Consensus       181 vytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~--~DtRnm~kPl  247 (339)
T KOG0280|consen  181 VYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV--LDTRNMGKPL  247 (339)
T ss_pred             EEecCCCceEEEEEecCCcc-eeeecceeeecceEEEecCCCCCceEEEeccccceee--eehhcccCcc
Confidence            46899999999999996542 1111 111334588888777 4789999999999999  88884 3443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.94  E-value=0.00017  Score=63.98  Aligned_cols=117  Identities=10%  Similarity=0.081  Sum_probs=70.8

Q ss_pred             EeecCCeEEEEECCCCccceeE------------ecC-------CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092            3 VGTADRNLVVFNLQNPQTEFKR------------INS-------PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~------------~~~-------~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~   63 (147)
                      +-+.++.|++||+.++......            +..       ..-.....++++|+|+.+++-+.+++|++  ||..+
T Consensus       757 ADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv--iD~~t  834 (1057)
T PLN02919        757 ADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK--LDPAT  834 (1057)
T ss_pred             EECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE--EECCC
Confidence            3456789999999876421100            000       00012468999999999999999999999  77654


Q ss_pred             CcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           64 QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        64 ~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      +.. .++.+....+  + .+..                  .....++....++++|+|+++++-+.++.|++||+++++.
T Consensus       835 g~v-~tiaG~G~~G--~-~dG~------------------~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        835 KRV-TTLAGTGKAG--F-KDGK------------------ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CeE-EEEeccCCcC--C-CCCc------------------ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            433 2332211000  0 0000                  0000111122459999999999999999999999988765

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=97.93  E-value=4e-05  Score=58.59  Aligned_cols=73  Identities=15%  Similarity=0.168  Sum_probs=59.3

Q ss_pred             cceEEEEEccCCCEEEEEeeCCeEEEEeecCCC-CcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeee
Q 032092           31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFV  109 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (147)
                      .+|+|.||++|...+|++-....|.|+.++-.+ -+...+++.|..     .++.+                        
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-----~vtgv------------------------   61 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-----IVTGV------------------------   61 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc-----ceeEE------------------------
Confidence            579999999999999999999999995554433 344555555543     45556                        


Q ss_pred             eceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092          110 KSHVIVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus       110 ~~~~~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                            .|+|..+.|.||+.|...++|-.
T Consensus        62 ------dWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen   62 ------DWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             ------eecCCCCceeEccCCCCcccccc
Confidence                  99999999999999999999987

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.92  E-value=0.00033  Score=55.02  Aligned_cols=102  Identities=11%  Similarity=0.088  Sum_probs=67.0

Q ss_pred             cCCeEEEEECCCCcc----ceeEecCCC------CcceEEEEEccCCCEEEEEee----------CCeEEEEeecCCCCc
Q 032092            6 ADRNLVVFNLQNPQT----EFKRINSPL------KYQMRCVAAFPDQQGFWVGSI----------EGRVGVHHLDDSQQS   65 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~----~~~~~~~~~------~~~i~~la~spdg~~l~~g~~----------dg~i~i~~~d~~~~~   65 (147)
                      ..|+|.+-|+...+.    ++..+....      ...+.-++++|+++.+.+...          .+.|.+  +|..+++
T Consensus       213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V--iD~~t~k  290 (352)
T TIGR02658       213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV--VDAKTGK  290 (352)
T ss_pred             cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE--EECCCCe
Confidence            349999999755422    222211110      012345999999988777431          135655  8988887


Q ss_pred             ceeEEE-eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCC-eEEEeC-CCCcEEEeecCCce
Q 032092           66 KNFTFK-CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH-TFATAG-SDGAFNFWDKDSKQ  142 (147)
Q Consensus        66 ~~~~~~-~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~-~latg~-~Dg~i~iWd~~~~~  142 (147)
                      .+.++. ++       .+..+                              +++|||+ +|.+.. .++.|.+.|+.+++
T Consensus       291 vi~~i~vG~-------~~~~i------------------------------avS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       291 RLRKIELGH-------EIDSI------------------------------NVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             EEEEEeCCC-------ceeeE------------------------------EECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence            777664 22       23444                              9999998 777655 58899999999998


Q ss_pred             eeec
Q 032092          143 RLKV  146 (147)
Q Consensus       143 ~~~~  146 (147)
                      .+++
T Consensus       334 ~i~~  337 (352)
T TIGR02658       334 ELSS  337 (352)
T ss_pred             EEee
Confidence            8875

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.91  E-value=0.00013  Score=58.62  Aligned_cols=90  Identities=17%  Similarity=0.065  Sum_probs=53.7

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC-C--eEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE-G--RVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d-g--~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      ..|.++|..... + ..+.. +...+.+.+|||||+.|+..+.+ +  .|.+  ||+.+++.. .+.....     ....
T Consensus       176 ~~L~~~D~dG~~-~-~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~--~dl~~g~~~-~l~~~~g-----~~~~  244 (427)
T PRK02889        176 YQLQISDADGQN-A-QSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYV--HDLATGRRR-VVANFKG-----SNSA  244 (427)
T ss_pred             cEEEEECCCCCC-c-eEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEE--EECCCCCEE-EeecCCC-----Cccc
Confidence            467777774432 2 22322 23468899999999999877643 3  3655  777655432 2221111     1122


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCCcEEEeec
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDGAFNFWDK  138 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg~i~iWd~  138 (147)
                      .                              +|+|||+.|+ +.+.||...||.+
T Consensus       245 ~------------------------------~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        245 P------------------------------AWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             e------------------------------EECCCCCEEEEEEccCCCceEEEE
Confidence            2                              9999998776 5677887666653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.91  E-value=0.00023  Score=57.60  Aligned_cols=96  Identities=14%  Similarity=0.052  Sum_probs=57.3

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEEeecccee
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTS   87 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~   87 (147)
                      .+.++|....+.  +.+.. ...++.+.+|||||+.|+..+. ++...||-+|+.+++.. .+.....     .....  
T Consensus       199 ~l~i~d~dG~~~--~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g-----~~~~~--  267 (448)
T PRK04792        199 QLMIADYDGYNE--QMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPG-----INGAP--  267 (448)
T ss_pred             EEEEEeCCCCCc--eEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCC-----CcCCe--
Confidence            567778765432  12221 2346788999999999887654 45545555787655432 1211110     01122  


Q ss_pred             eeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEE-eCCCCc--EEEeecCCcee
Q 032092           88 ILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFAT-AGSDGA--FNFWDKDSKQR  143 (147)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~lat-g~~Dg~--i~iWd~~~~~~  143 (147)
                                                  +|+|||+.|+. .+.+|.  |++||+++++.
T Consensus       268 ----------------------------~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~  298 (448)
T PRK04792        268 ----------------------------RFSPDGKKLALVLSKDGQPEIYVVDIATKAL  298 (448)
T ss_pred             ----------------------------eECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence                                        99999987764 455664  88889877654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.00012  Score=61.78  Aligned_cols=103  Identities=18%  Similarity=0.299  Sum_probs=68.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-----CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-----QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-----g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      +++||.||+|.|-.+-+.+. .+++.  .+.++.+|+++||     .+++++|+.-| +.+  ...+--....+...|..
T Consensus        86 ~asCS~DGkv~I~sl~~~~~-~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL--~er~wlgnk~~v~l~~~  159 (846)
T KOG2066|consen   86 VASCSDDGKVVIGSLFTDDE-ITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVL--SERNWLGNKDSVVLSEG  159 (846)
T ss_pred             EEEecCCCcEEEeeccCCcc-ceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEE--ehhhhhcCccceeeecC
Confidence            58999999999999988753 34443  2357999999998     67899999999 666  43321111111122322


Q ss_pred             CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .   +++.++                              .|  .|+++|=++.+| |+|+|+.+++.+-
T Consensus       160 e---G~I~~i------------------------------~W--~g~lIAWand~G-v~vyd~~~~~~l~  193 (846)
T KOG2066|consen  160 E---GPIHSI------------------------------KW--RGNLIAWANDDG-VKVYDTPTRQRLT  193 (846)
T ss_pred             c---cceEEE------------------------------Ee--cCcEEEEecCCC-cEEEeccccceee
Confidence            2   233333                              44  566888887666 8999998887663

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.87  E-value=4.3e-05  Score=62.33  Aligned_cols=56  Identities=23%  Similarity=0.375  Sum_probs=45.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      |+.|+.||.|.+||..++...  ...  .......++|+|+|..|++|+..|.+.+  ||..
T Consensus       274 LvlGC~DgSiiLyD~~~~~t~--~~k--a~~~P~~iaWHp~gai~~V~s~qGelQ~--FD~A  329 (545)
T PF11768_consen  274 LVLGCEDGSIILYDTTRGVTL--LAK--AEFIPTLIAWHPDGAIFVVGSEQGELQC--FDMA  329 (545)
T ss_pred             EEEEecCCeEEEEEcCCCeee--eee--ecccceEEEEcCCCcEEEEEcCCceEEE--EEee
Confidence            578999999999999887422  222  2245789999999999999999999999  5554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.87  E-value=0.00039  Score=56.17  Aligned_cols=128  Identities=16%  Similarity=0.174  Sum_probs=81.9

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE--eeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG--SIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g--~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      ..+++|++++....++..   ..+.+|...+|.|.++.|++.  -.+-.+.+  +|++.+ ..+.+...+.....++...
T Consensus       254 esnLyl~~~~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~--~~lr~N-l~~~~Pe~~rNT~~fsp~~  327 (561)
T COG5354         254 ESNLYLLRITERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSV--FDLRGN-LRFYFPEQKRNTIFFSPHE  327 (561)
T ss_pred             cceEEEEeecccccceec---cccccceeeeecccCCceeEEecccccceee--cccccc-eEEecCCcccccccccCcc
Confidence            357889999865544331   235689999999999988754  57888888  777633 3333332222222334455


Q ss_pred             ceeeeecCCC---cceeeeeeeeeee--eeece--EEEEEecCCCeEEEeCC------CCcEEEeecCC
Q 032092           85 FTSILAGDAP---KYSSFYKVKRLHL--FVKSH--VIVLFVQIHHTFATAGS------DGAFNFWDKDS  140 (147)
Q Consensus        85 ~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~--~~~~fspdg~~latg~~------Dg~i~iWd~~~  140 (147)
                      -..+.+|-+.   .+..+....|...  .+.|-  ..|.|+|||+++.+.-.      |..|+|||+-.
T Consensus       328 r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         328 RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             cEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence            5666766666   3556666555433  23333  35899999998877643      78999999754

>smart00320 WD40 WD40 repeats

Probab=97.85  E-value=4.3e-05  Score=38.19  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=21.4

Q ss_pred             EEEecCCCeEEEeCCCCcEEEee
Q 032092          115 VLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus       115 ~~fspdg~~latg~~Dg~i~iWd  137 (147)
                      +.|+|.++++++++.|+.+++||
T Consensus        18 ~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       18 VAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEECCCCCEEEEecCCCeEEEcC
Confidence            49999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.83  E-value=9.1e-05  Score=57.35  Aligned_cols=117  Identities=10%  Similarity=0.085  Sum_probs=74.7

Q ss_pred             eEeecCCeEEEEECCCCc------cceeEecCCCC--------cceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcce
Q 032092            2 VVGTADRNLVVFNLQNPQ------TEFKRINSPLK--------YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN   67 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~------~~~~~~~~~~~--------~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~   67 (147)
                      +..+.-|+|+|-|+|...      +.+.....|..        .+|..+.|+++|+++++=+- -+|+|||.+. ..+++
T Consensus       230 ~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm-e~~pv  307 (433)
T KOG1354|consen  230 VYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM-EAKPV  307 (433)
T ss_pred             EEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc-cCCcc
Confidence            456788999999999532      11111111111        24788999999999887543 7899955544 45777


Q ss_pred             eEEEeccCCc-eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           68 FTFKCHRDGS-ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        68 ~~~~~h~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      .+++.|..-. ..+.++.-                     -.+...+.|+|+-++.+++||+....++++++..+
T Consensus       308 ~t~~vh~~lr~kLc~lYEn---------------------D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  308 ETYPVHEYLRSKLCSLYEN---------------------DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             eEEeehHhHHHHHHHHhhc---------------------cchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            7887775310 00011100                     01222345799999999999999999999996543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.82  E-value=2.8e-05  Score=65.22  Aligned_cols=102  Identities=19%  Similarity=0.228  Sum_probs=73.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC-cceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~-~~~~~~~~h~~~~~~   79 (147)
                      |++++.|-.|..||++.+..++....+-+ .....|+|+-....+.+.+-...|++  ||.+.| .++..+++|..    
T Consensus       130 latcsvdt~vh~wd~rSp~~p~ys~~~w~-s~asqVkwnyk~p~vlasshg~~i~v--wd~r~gs~pl~s~K~~vs----  202 (1081)
T KOG0309|consen  130 LATCSVDTYVHAWDMRSPHRPFYSTSSWR-SAASQVKWNYKDPNVLASSHGNDIFV--WDLRKGSTPLCSLKGHVS----  202 (1081)
T ss_pred             eeeccccccceeeeccCCCcceeeeeccc-ccCceeeecccCcchhhhccCCceEE--EeccCCCcceEEecccce----
Confidence            68999999999999999988876554322 23577899875444444455577888  888764 56667777653    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC-CCeEEEeCCCCcEEEeecCC
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI-HHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd-g~~latg~~Dg~i~iWd~~~  140 (147)
                       .++++                              +|+.- ...+.++++|++|++||.++
T Consensus       203 -~vn~~------------------------------~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  203 -SVNSI------------------------------DFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             -eeehH------------------------------HHhhhhhhhhcccCCCCceeeecccc
Confidence             46666                              67653 35788999999999999753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.81  E-value=0.00011  Score=64.39  Aligned_cols=66  Identities=12%  Similarity=0.108  Sum_probs=47.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT   69 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~   69 (147)
                      |+.+..-+.|..||++..... -++.. +..+-|++++.+|-++.+++|+..|.+-+  ||+|=+.++..
T Consensus      1166 lvy~T~~~~iv~~D~r~~~~~-w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~l--WDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1166 LVYATDLSRIVSWDTRMRHDA-WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVL--WDLRFRVPILS 1232 (1431)
T ss_pred             EEEEEeccceEEecchhhhhH-HhhhcCccccceeEEEecCCceEEEEecCCceEEE--EEeecCceeec
Confidence            456677888999999987532 12221 12246999999999999999999999999  67664444433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00012  Score=60.29  Aligned_cols=77  Identities=16%  Similarity=0.172  Sum_probs=61.2

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeec-cceeeeecCCCcceeeeeeeeeeeeee
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVI-SFTSILAGDAPKYSSFYKVKRLHLFVK  110 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (147)
                      .+.-+.|+|.-+.+|.+..+|.+.|+  ... .+.+.++.-|..     ++. ++                         
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~--R~n-~qRlwtip~p~~-----~v~~sL-------------------------   68 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIH--RLN-WQRLWTIPIPGE-----NVTASL-------------------------   68 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEE--Eec-cceeEeccCCCC-----ccceee-------------------------
Confidence            37789999999999999999999883  332 455566654432     123 44                         


Q ss_pred             ceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092          111 SHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       111 ~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                           +|.|||+.||-|-.||+|++=|.+++..+..
T Consensus        69 -----~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   69 -----CWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             -----eecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence                 9999999999999999999999999988776

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.72  E-value=0.0001  Score=57.05  Aligned_cols=109  Identities=17%  Similarity=0.226  Sum_probs=69.0

Q ss_pred             ecCCeEEEEECCCCccceeEecC-CCC-----cceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcce----eEEEec
Q 032092            5 TADRNLVVFNLQNPQTEFKRINS-PLK-----YQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKN----FTFKCH   73 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~-~~~-----~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~----~~~~~h   73 (147)
                      ++|=.|.||++.-..+.+..... |.+     .-|++-.|+|. .+.|+.+++.|+|+|  -|.|+...-    ..|...
T Consensus       182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL--cDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL--CDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE--eechhhhhhcchhhhhccc
Confidence            56778999999876555554432 333     23889999997 678999999999999  777642111    111100


Q ss_pred             cCC-ce------EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec-CCceeee
Q 032092           74 RDG-SE------TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK-DSKQRLK  145 (147)
Q Consensus        74 ~~~-~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~-~~~~~~~  145 (147)
                      ... ..      ..++..                              +.|+++|++++|-+. -+|++||+ .+.+.+.
T Consensus       260 edp~~rsffseiIsSISD------------------------------vKFs~sGryilsRDy-ltvk~wD~nme~~pv~  308 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISD------------------------------VKFSHSGRYILSRDY-LTVKLWDLNMEAKPVE  308 (433)
T ss_pred             cCCcchhhHHHHhhhhhc------------------------------eEEccCCcEEEEecc-ceeEEEeccccCCcce
Confidence            000 00      011111                              499999999999654 47999998 3455554


Q ss_pred             c
Q 032092          146 V  146 (147)
Q Consensus       146 ~  146 (147)
                      +
T Consensus       309 t  309 (433)
T KOG1354|consen  309 T  309 (433)
T ss_pred             E
Confidence            4

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.71  E-value=0.0013  Score=47.86  Aligned_cols=107  Identities=16%  Similarity=0.122  Sum_probs=67.7

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE-EeccCCceEE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSETC   80 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~-~~h~~~~~~~   80 (147)
                      ++++.++.+..||+.+++.. -+...+.  ++.... ..++..+++++.++.+..  +|..+|+.+.+. ........  
T Consensus        40 ~~~~~~~~l~~~d~~tG~~~-W~~~~~~--~~~~~~-~~~~~~v~v~~~~~~l~~--~d~~tG~~~W~~~~~~~~~~~--  111 (238)
T PF13360_consen   40 YVASGDGNLYALDAKTGKVL-WRFDLPG--PISGAP-VVDGGRVYVGTSDGSLYA--LDAKTGKVLWSIYLTSSPPAG--  111 (238)
T ss_dssp             EEEETTSEEEEEETTTSEEE-EEEECSS--CGGSGE-EEETTEEEEEETTSEEEE--EETTTSCEEEEEEE-SSCTCS--
T ss_pred             EEEcCCCEEEEEECCCCCEE-EEeeccc--ccccee-eecccccccccceeeeEe--cccCCcceeeeeccccccccc--
Confidence            45678999999999999753 2232211  111111 233667777778888877  898899988773 32211000  


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .....                              +...++..++.+..++.|..+|.++|+.+.+
T Consensus       112 ~~~~~------------------------------~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~  147 (238)
T PF13360_consen  112 VRSSS------------------------------SPAVDGDRLYVGTSSGKLVALDPKTGKLLWK  147 (238)
T ss_dssp             TB--S------------------------------EEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred             ccccc------------------------------CceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence            00111                              3344477788888899999999999998764

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.71  E-value=0.0015  Score=50.95  Aligned_cols=107  Identities=18%  Similarity=0.243  Sum_probs=62.1

Q ss_pred             EeecCCeEEEEECC--CCcc-ceeEecC-C--C--CcceEEEEEccCCCEEEEE-eeCCeEEEEeecCCCCccee--EEE
Q 032092            3 VGTADRNLVVFNLQ--NPQT-EFKRINS-P--L--KYQMRCVAAFPDQQGFWVG-SIEGRVGVHHLDDSQQSKNF--TFK   71 (147)
Q Consensus         3 ~gs~dg~v~iwdi~--~~~~-~~~~~~~-~--~--~~~i~~la~spdg~~l~~g-~~dg~i~i~~~d~~~~~~~~--~~~   71 (147)
                      +.-.+++|.+|++.  +++. ....+.. +  .  ......|+++|||++|.++ -.+++|.++++|..+++...  .+.
T Consensus       209 ~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~  288 (345)
T PF10282_consen  209 VNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP  288 (345)
T ss_dssp             EETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE
T ss_pred             ecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe
Confidence            34457889999988  3321 1112211 1  1  1146789999999986654 46788999666655554321  111


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeec--CCceee
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDK--DSKQRL  144 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~--~~~~~~  144 (147)
                      ....     .+..+                              +++|+|++|+.+.. ++.|.+|++  ++|++.
T Consensus       289 ~~G~-----~Pr~~------------------------------~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  289 TGGK-----FPRHF------------------------------AFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             ESSS-----SEEEE------------------------------EE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             CCCC-----CccEE------------------------------EEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence            1000     12233                              99999998887765 568998866  466543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.65  E-value=0.0013  Score=52.96  Aligned_cols=74  Identities=16%  Similarity=0.151  Sum_probs=46.2

Q ss_pred             ceEEEEEccCCCEEEEEeeC-C--eEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeee
Q 032092           32 QMRCVAAFPDQQGFWVGSIE-G--RVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLF  108 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~d-g--~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (147)
                      .+...+|||||+.|+..+.+ |  .|.+  +|+.+++.. .+.....     .+...                       
T Consensus       328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v--~dl~~g~~~-~Lt~~~~-----~~~~p-----------------------  376 (428)
T PRK01029        328 NSSCPAWSPDGKKIAFCSVIKGVRQICV--YDLATGRDY-QLTTSPE-----NKESP-----------------------  376 (428)
T ss_pred             CccceeECCCCCEEEEEEcCCCCcEEEE--EECCCCCeE-EccCCCC-----Cccce-----------------------
Confidence            46788999999998866543 3  4656  777655432 2221110     12223                       


Q ss_pred             eeceEEEEEecCCCeEEE-eCC--CCcEEEeecCCcee
Q 032092          109 VKSHVIVLFVQIHHTFAT-AGS--DGAFNFWDKDSKQR  143 (147)
Q Consensus       109 ~~~~~~~~fspdg~~lat-g~~--Dg~i~iWd~~~~~~  143 (147)
                             +|+|||+.|+- +..  ...|++||+.+++.
T Consensus       377 -------~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        377 -------SWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             -------EECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence                   99999987763 332  45799999877654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.00022  Score=56.12  Aligned_cols=73  Identities=12%  Similarity=0.110  Sum_probs=57.2

Q ss_pred             cceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeee
Q 032092           31 YQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFV  109 (147)
Q Consensus        31 ~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (147)
                      ..|++|+|||..+ .+..++.+.+|+|  +|+++......+..|+      ++.+.                        
T Consensus       194 ~~IrdlafSp~~~GLl~~asl~nkiki--~dlet~~~vssy~a~~------~~wSC------------------------  241 (463)
T KOG1645|consen  194 SFIRDLAFSPFNEGLLGLASLGNKIKI--MDLETSCVVSSYIAYN------QIWSC------------------------  241 (463)
T ss_pred             hhhhhhccCccccceeeeeccCceEEE--EecccceeeeheeccC------Cceee------------------------
Confidence            4599999999877 6788999999999  8887655555555443      24444                        


Q ss_pred             eceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092          110 KSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus       110 ~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~  141 (147)
                            +|.-|. +++.+|..+|.|.|+|++..
T Consensus       242 ------~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  242 ------CWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             ------eeccCCcceeEEeccCceEEEEEccCC
Confidence                  888876 88999999999999999753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.56  E-value=0.0018  Score=50.88  Aligned_cols=101  Identities=10%  Similarity=0.115  Sum_probs=63.9

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      .+++.+|.++.||.++++.. -...  .. .....+  .++..+.+++.||.+..  +|..+++.+..+......    .
T Consensus       245 y~~~~~g~l~a~d~~tG~~~-W~~~--~~-~~~~p~--~~~~~vyv~~~~G~l~~--~d~~tG~~~W~~~~~~~~----~  312 (377)
T TIGR03300       245 YAVSYQGRVAALDLRSGRVL-WKRD--AS-SYQGPA--VDDNRLYVTDADGVVVA--LDRRSGSELWKNDELKYR----Q  312 (377)
T ss_pred             EEEEcCCEEEEEECCCCcEE-Eeec--cC-CccCce--EeCCEEEEECCCCeEEE--EECCCCcEEEccccccCC----c
Confidence            45677899999999998642 2121  11 111222  34677888889999998  888778766544211100    0


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..+.                              .  ..+..++.++.||.++++|.++++.+.+
T Consensus       313 ~ssp------------------------------~--i~g~~l~~~~~~G~l~~~d~~tG~~~~~  345 (377)
T TIGR03300       313 LTAP------------------------------A--VVGGYLVVGDFEGYLHWLSREDGSFVAR  345 (377)
T ss_pred             cccC------------------------------E--EECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            0111                              1  1456888888999999999999888754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.56  E-value=0.0021  Score=57.28  Aligned_cols=125  Identities=13%  Similarity=0.119  Sum_probs=69.1

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCC--------------CCcceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCcc
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSP--------------LKYQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~--------------~~~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      ++.+.++.|++||..++..  ..+...              .-.....|+++|+|+ .+++-+.+++|++  ||+.++..
T Consensus       699 Vad~~~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv--~D~~tg~~  774 (1057)
T PLN02919        699 IAMAGQHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRA--LDLKTGGS  774 (1057)
T ss_pred             EEECCCCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEE--EECCCCcE
Confidence            3445678899999887632  111100              001346799999998 5566677899999  66654432


Q ss_pred             eeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           67 NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        67 ~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      . .+.+ ..     +..+..+...|..++..       ....+..-..++++|+|+++++-..++.|++||.+++...
T Consensus       775 ~-~~~g-g~-----~~~~~~l~~fG~~dG~g-------~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        775 R-LLAG-GD-----PTFSDNLFKFGDHDGVG-------SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             E-EEEe-cc-----cccCcccccccCCCCch-------hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            1 1111 00     00000000111111100       0001111235699999999999999999999999877653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.56  E-value=0.00016  Score=58.05  Aligned_cols=105  Identities=15%  Similarity=0.155  Sum_probs=68.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCCcc-eeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQSK-NFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~~~-~~~~~~h~~~~   77 (147)
                      |++|+.|..|-+||...++. ...+.++|...|..-.|-|.  ...+++++.||++++-.++...... ...+.-|..  
T Consensus       157 l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g--  233 (559)
T KOG1334|consen  157 LASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG--  233 (559)
T ss_pred             eeccCccceEEeehhhccCc-ccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC--
Confidence            68999999999999998853 44566666555555567775  4679999999999984444332111 112222433  


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~  141 (147)
                         ++..+                              +.-|+. ..|.|+|.|+.+.=.|++..
T Consensus       234 ---~vhkl------------------------------av~p~sp~~f~S~geD~~v~~~Dlr~~  265 (559)
T KOG1334|consen  234 ---PVHKL------------------------------AVEPDSPKPFLSCGEDAVVFHIDLRQD  265 (559)
T ss_pred             ---cccee------------------------------eecCCCCCcccccccccceeeeeeccC
Confidence               34444                              566655 56788888888777776554

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.55  E-value=0.00031  Score=58.57  Aligned_cols=108  Identities=17%  Similarity=0.235  Sum_probs=72.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |+.|+.-|.+++|+-..++-. +.........+..+.+|++..+.|+|+..|.|.++-...+ +.....+..|-...+..
T Consensus        48 l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~~~~t~~d~~~~~  125 (726)
T KOG3621|consen   48 LAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDLDYVTPCDKSHKC  125 (726)
T ss_pred             EEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCcceeeccccccCCc
Confidence            578999999999998877432 2112112234666788999999999999999998433332 22222222222222223


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .|+++                              +|++++..+.+|..-|+|..=-+.+
T Consensus       126 rVTal------------------------------~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  126 RVTAL------------------------------EWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eEEEE------------------------------EecccccEEeecCCCceEEEEEech
Confidence            46665                              9999999999999999998776655

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.53  E-value=0.00083  Score=52.08  Aligned_cols=85  Identities=18%  Similarity=0.368  Sum_probs=60.4

Q ss_pred             ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeee
Q 032092           21 EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFY  100 (147)
Q Consensus        21 ~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~  100 (147)
                      ++.++. ++..++.+++|.|....+-+|..|..+.+|++-.+.+. .+.+.+|...     +..+               
T Consensus       189 ~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~gh~~k-----V~~l---------------  246 (404)
T KOG1409|consen  189 LITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQGHNDK-----VQAL---------------  246 (404)
T ss_pred             eEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeeccchhh-----hhhh---------------
Confidence            344443 56678999999999999999999999999555444332 2455666543     3333               


Q ss_pred             eeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092          101 KVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus       101 ~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                                     ..-+--+.|.+++.||.|-+||.+-.+
T Consensus       247 ---------------~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  247 ---------------SYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ---------------hhhhhheeeeeccCCCeEEEEecccee
Confidence                           333344789999999999999987544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.00082  Score=53.81  Aligned_cols=110  Identities=10%  Similarity=-0.029  Sum_probs=74.1

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC------CcceeEEEeccCC--
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ------QSKNFTFKCHRDG--   76 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~------~~~~~~~~~h~~~--   76 (147)
                      ..+|.+.++|-+...++......-|-.+|.++-++|-++.+++....|.|.-  |....      .+....++....-  
T Consensus       119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy--Ws~e~~~qfPr~~l~~~~K~eTdLy~  196 (558)
T KOG0882|consen  119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEY--WSAEGPFQFPRTNLNFELKHETDLYG  196 (558)
T ss_pred             ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEe--ecCCCcccCccccccccccccchhhc
Confidence            4578999999887543332233335568999999999999999999999987  55431      1111112111000  


Q ss_pred             --ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           77 --SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        77 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                        ......                              .++.|+|+|..+++=+.|.+|++++.+++++++.
T Consensus       197 f~K~Kt~p------------------------------ts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  197 FPKAKTEP------------------------------TSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             ccccccCc------------------------------cceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence              000011                              1349999999999999999999999999988764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.43  E-value=0.0036  Score=55.04  Aligned_cols=132  Identities=9%  Similarity=0.088  Sum_probs=74.0

Q ss_pred             CeEeecCCeEEEE----ECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVF----NLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iw----di~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      |+.+..+|.|-++    |..+.+.  ... ......|.+++||||++.+|..+.+|++.+  ++ ++..++....-+...
T Consensus        90 l~~~~~~Gdi~~~~~~~~~~~~~~--E~V-G~vd~GI~a~~WSPD~Ella~vT~~~~l~~--mt-~~fd~i~E~~l~~~~  163 (928)
T PF04762_consen   90 LCIALASGDIILVREDPDPDEDEI--EIV-GSVDSGILAASWSPDEELLALVTGEGNLLL--MT-RDFDPISEVPLDSDD  163 (928)
T ss_pred             EEEEECCceEEEEEccCCCCCcee--EEE-EEEcCcEEEEEECCCcCEEEEEeCCCEEEE--Ee-ccceEEEEeecCccc
Confidence            3567788989888    5555432  222 122346999999999999999999999987  64 334444433322211


Q ss_pred             ceEEeeccceeee--ecCCCccee---eee------------eeeeee-eeeceEEEEEecCCCeEEEeCC---C---Cc
Q 032092           77 SETCSVISFTSIL--AGDAPKYSS---FYK------------VKRLHL-FVKSHVIVLFVQIHHTFATAGS---D---GA  132 (147)
Q Consensus        77 ~~~~~v~~~~~~~--~~~~~~~~~---~~~------------~~~~~~-~~~~~~~~~fspdg~~latg~~---D---g~  132 (147)
                           ......++  +|...+=..   .+.            .+.... .-.+-.+++|-.||++||..+-   +   ..
T Consensus       164 -----~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~  238 (928)
T PF04762_consen  164 -----FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRV  238 (928)
T ss_pred             -----cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeE
Confidence                 00000011  122111000   000            000001 1224467899999999999875   3   47


Q ss_pred             EEEeecCCceee
Q 032092          133 FNFWDKDSKQRL  144 (147)
Q Consensus       133 i~iWd~~~~~~~  144 (147)
                      +|||+-+ |.+.
T Consensus       239 iRVy~Re-G~L~  249 (928)
T PF04762_consen  239 IRVYSRE-GELQ  249 (928)
T ss_pred             EEEECCC-ceEE
Confidence            9999964 6544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.00038  Score=57.19  Aligned_cols=112  Identities=13%  Similarity=0.187  Sum_probs=71.1

Q ss_pred             EeecCCeEEEEECCCCccceeEecC-CCCcceEEEEEccC--CCEEEEE-eeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPD--QQGFWVG-SIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spd--g~~l~~g-~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      +++.||.|.+||--.+.. ..+... +....+.-+..-|+  ...+++| +...++++  +|.|...-...++...... 
T Consensus       799 i~ScD~giHlWDPFigr~-Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl--~DaRsce~~~E~kVcna~~-  874 (1034)
T KOG4190|consen  799 IASCDGGIHLWDPFIGRL-LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKL--FDARSCEWTCELKVCNAPG-  874 (1034)
T ss_pred             eeeccCcceeecccccch-hHhhhcCcccCCCceeEecccCcchheeeeccchhhhee--eecccccceeeEEeccCCC-
Confidence            467899999999876642 222222 21122333333343  3444454 78999999  9998766655554321111 


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                         ++.+..                          .++..|.|+.+|.|-++|.|.+-|.++|+.+..|
T Consensus       875 ---Pna~~R--------------------------~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  875 ---PNALTR--------------------------AIAVADKGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             ---Cchhee--------------------------EEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence               112100                          1277899999999999999999999999988653

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.41  E-value=0.00066  Score=52.52  Aligned_cols=106  Identities=12%  Similarity=0.059  Sum_probs=59.2

Q ss_pred             EEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC-CceEEeeccceee-eecCCCcceeeeeeeeeeee---e
Q 032092           35 CVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD-GSETCSVISFTSI-LAGDAPKYSSFYKVKRLHLF---V  109 (147)
Q Consensus        35 ~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~-~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~---~  109 (147)
                      -.+|||+|+++|+.+.- .+.|  .|..+-+..+-|.+-.. .-..+..++...+ ...-++.++++. +.+..++   -
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlvi--Rd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvws-l~Qpew~ckId   88 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVI--RDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWS-LVQPEWYCKID   88 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEE--eccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEE-eecceeEEEec
Confidence            45899999999998865 6666  77765433322222110 0112333333222 223333333322 2222221   1


Q ss_pred             ---eceEEEEEecCCC-eEEEeCCCCcEEEeecCCceee
Q 032092          110 ---KSHVIVLFVQIHH-TFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus       110 ---~~~~~~~fspdg~-~latg~~Dg~i~iWd~~~~~~~  144 (147)
                         -|..+..|||||+ .|.+..-|-.|.+|.+.+.+..
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence               2234679999995 5667777999999999887654

>smart00320 WD40 WD40 repeats

Probab=97.37  E-value=0.00048  Score=34.09  Aligned_cols=29  Identities=21%  Similarity=0.156  Sum_probs=25.6

Q ss_pred             CCcceEEEEEccCCCEEEEEeeCCeEEEE
Q 032092           29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVH   57 (147)
Q Consensus        29 ~~~~i~~la~spdg~~l~~g~~dg~i~i~   57 (147)
                      +...|.+++|+|+++.+++++.||.+++|
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~   39 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASASDDGTIKLW   39 (40)
T ss_pred             cCCceeEEEECCCCCEEEEecCCCeEEEc
Confidence            34579999999999999999999999993

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.32  E-value=0.00055  Score=52.67  Aligned_cols=115  Identities=18%  Similarity=0.233  Sum_probs=69.4

Q ss_pred             eecCCeEEEEECCCCccceeEecC-CCCc-----ceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcc------eeEE
Q 032092            4 GTADRNLVVFNLQNPQTEFKRINS-PLKY-----QMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSK------NFTF   70 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~~~~~~~~-~~~~-----~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~------~~~~   70 (147)
                      .+.|=.|.+|++......+..... |++.     -|++-.|+|. ...|..+++.|.|+|  -|.|+...      +...
T Consensus       189 SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl--~DlRq~alcdn~~klfe~  266 (460)
T COG5170         189 SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL--NDLRQSALCDNSKKLFEL  266 (460)
T ss_pred             eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe--hhhhhhhhccCchhhhhh
Confidence            356778999999876555554332 4432     3889999997 567888899999999  88874211      1111


Q ss_pred             EeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC-ceeeec
Q 032092           71 KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS-KQRLKV  146 (147)
Q Consensus        71 ~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~-~~~~~~  146 (147)
                      .-....     ++-..-++                    ..+.-+.|+|.|+++++-+. -+|+|||.+. +.+++|
T Consensus       267 ~~D~v~-----~~ff~eiv--------------------sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikT  317 (460)
T COG5170         267 TIDGVD-----VDFFEEIV--------------------SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKT  317 (460)
T ss_pred             ccCccc-----chhHHHHh--------------------hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCcee
Confidence            100000     00000000                    00111499999999999765 4799999875 555554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.32  E-value=0.0047  Score=48.49  Aligned_cols=62  Identities=18%  Similarity=0.276  Sum_probs=39.3

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcce-EEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQM-RCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF   70 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i-~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~   70 (147)
                      ++++.+|.|.-+|..+++..-+ ...+  ..+ ...+  .+++.+++++.+|.+..  +|..+|+.+...
T Consensus        69 ~v~~~~g~v~a~d~~tG~~~W~-~~~~--~~~~~~p~--v~~~~v~v~~~~g~l~a--ld~~tG~~~W~~  131 (377)
T TIGR03300        69 YAADADGTVVALDAETGKRLWR-VDLD--ERLSGGVG--ADGGLVFVGTEKGEVIA--LDAEDGKELWRA  131 (377)
T ss_pred             EEECCCCeEEEEEccCCcEeee-ecCC--CCcccceE--EcCCEEEEEcCCCEEEE--EECCCCcEeeee
Confidence            5667788888899888864322 1111  111 1222  24677888888888887  788778776554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.28  E-value=0.00095  Score=49.07  Aligned_cols=59  Identities=24%  Similarity=0.235  Sum_probs=36.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEE-EEccCCCEEEEEeeCCeEEEEeecCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCV-AAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~l-a~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      |++|+.+|.|++|+............+ ...+|.++ ..-.++.+..++..||.|+.  ++..
T Consensus        73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~--~n~~  132 (238)
T KOG2444|consen   73 LMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRA--CNIK  132 (238)
T ss_pred             EEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceee--eccc
Confidence            578999999999999854332111211 12234433 22234557789999999999  5553

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.00036  Score=60.71  Aligned_cols=105  Identities=17%  Similarity=0.106  Sum_probs=66.9

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF   85 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~   85 (147)
                      .||....+.++.-.++........+.++..++.--.+..+++|++.|.+..  .|.+..  +..  -|.+....+++.++
T Consensus        63 s~~~~~~~~i~~H~q~~~l~~~~e~~~~~v~s~a~~~~~ivi~Ts~ghvl~--~d~~~n--L~~--~~~ne~v~~~Vtsv  136 (1206)
T KOG2079|consen   63 SDGISSQFFIRRHGQPQVLAVHLEDIAAGVISSAIVVVPIVIGTSHGHVLL--SDMTGN--LGP--LHQNERVQGPVTSV  136 (1206)
T ss_pred             ccccccceeeccccchhhhHhhccCCCcceeeeeeeeeeEEEEcCchhhhh--hhhhcc--cch--hhcCCccCCcceee
Confidence            344455555555333221111111223444444344678999999999988  555421  111  25555444577777


Q ss_pred             eeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           86 TSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                                                    +|+.||+.++.|-++|.|.+||+..++.++.
T Consensus       137 ------------------------------afn~dg~~l~~G~~~G~V~v~D~~~~k~l~~  167 (1206)
T KOG2079|consen  137 ------------------------------AFNQDGSLLLAGLGDGHVTVWDMHRAKILKV  167 (1206)
T ss_pred             ------------------------------EecCCCceeccccCCCcEEEEEccCCcceee
Confidence                                          9999999999999999999999999887764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.27  E-value=0.0088  Score=48.15  Aligned_cols=56  Identities=14%  Similarity=0.192  Sum_probs=34.9

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE-eeCCeEEEEeecCCCCc
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG-SIEGRVGVHHLDDSQQS   65 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g-~~dg~i~i~~~d~~~~~   65 (147)
                      +..|.++|+.+++.  ..+.. ........+|||||+.++.. +.+|.-.||-+|...+.
T Consensus       212 ~~~Iyv~dl~tg~~--~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        212 KPTLYKYNLYTGKK--EKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CCEEEEEECCCCcE--EEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            45799999988753  23322 22345667899999877653 44554445547776543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.0011  Score=57.86  Aligned_cols=71  Identities=17%  Similarity=0.186  Sum_probs=52.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~   74 (147)
                      ++.|++.|.|-+.|++..=.+++.-. ....+|+++||+.||..++.|-.+|-|.+  ||..+++....+..|.
T Consensus       102 ivi~Ts~ghvl~~d~~~nL~~~~~ne-~v~~~Vtsvafn~dg~~l~~G~~~G~V~v--~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen  102 IVIGTSHGHVLLSDMTGNLGPLHQNE-RVQGPVTSVAFNQDGSLLLAGLGDGHVTV--WDMHRAKILKVITEHG  172 (1206)
T ss_pred             EEEEcCchhhhhhhhhcccchhhcCC-ccCCcceeeEecCCCceeccccCCCcEEE--EEccCCcceeeeeecC
Confidence            46788889999988876322223222 23468999999999999999999999999  6666566666665444

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.26  E-value=0.0095  Score=45.89  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=26.6

Q ss_pred             EEEEecCCCeEE-EeCCCCcEEEeecCCceeeec
Q 032092          114 IVLFVQIHHTFA-TAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       114 ~~~fspdg~~la-tg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +++++++|.++| |+-.-+.+.+||..+++++..
T Consensus       221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence            699999997764 444577899999999988754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.24  E-value=0.0016  Score=52.70  Aligned_cols=100  Identities=18%  Similarity=0.217  Sum_probs=63.2

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccce
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFT   86 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~   86 (147)
                      +..|.++.......+-.+.+ ....++..+++||.|.+|++....| |.+  |+-.....+.++. |..      +..+ 
T Consensus        10 s~~i~~f~~~~s~~~~~~~~-~~~~p~~~~~~SP~G~~l~~~~~~~-V~~--~~g~~~~~l~~~~-~~~------V~~~-   77 (561)
T COG5354          10 SAVISVFWNSQSEVIHTRFE-SENWPVAYVSESPLGTYLFSEHAAG-VEC--WGGPSKAKLVRFR-HPD------VKYL-   77 (561)
T ss_pred             cceEEEeecCcccccccccc-ccCcchhheeecCcchheehhhccc-eEE--ccccchhheeeee-cCC------ceec-
Confidence            34555544443322222232 2457899999999999999877765 556  6655444544554 332      3333 


Q ss_pred             eeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC---------------CCcEEEeecCCceeeecC
Q 032092           87 SILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS---------------DGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~---------------Dg~i~iWd~~~~~~~~~~  147 (147)
                                                   .|||.+++|.|=+.               +..+.+||..++.++.+|
T Consensus        78 -----------------------------~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf  124 (561)
T COG5354          78 -----------------------------DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF  124 (561)
T ss_pred             -----------------------------ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec
Confidence                                         67777777766533               235999999999998876

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.20  E-value=0.0019  Score=55.62  Aligned_cols=100  Identities=17%  Similarity=0.251  Sum_probs=70.8

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      +.|+-...+-.+|+++.+. .+...- ....+.-|.  .+++.+-+|...|+|.+  .|+++.+.+.+|.+|...     
T Consensus       151 i~Gg~Q~~li~~Dl~~~~e-~r~~~v-~a~~v~imR--~Nnr~lf~G~t~G~V~L--rD~~s~~~iht~~aHs~s-----  219 (1118)
T KOG1275|consen  151 IMGGLQEKLIHIDLNTEKE-TRTTNV-SASGVTIMR--YNNRNLFCGDTRGTVFL--RDPNSFETIHTFDAHSGS-----  219 (1118)
T ss_pred             eecchhhheeeeeccccee-eeeeec-cCCceEEEE--ecCcEEEeecccceEEe--ecCCcCceeeeeeccccc-----
Confidence            3455566777889998743 222111 111244444  45899999999999999  999999999999999863     


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC---------CCcEEEeecCCceee
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS---------DGAFNFWDKDSKQRL  144 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~---------Dg~i~iWd~~~~~~~  144 (147)
                      +.                                +|.-.|+.|+|||.         |..|+|||++.-+.|
T Consensus       220 iS--------------------------------DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral  259 (1118)
T KOG1275|consen  220 IS--------------------------------DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL  259 (1118)
T ss_pred             ee--------------------------------eeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence            21                                67778888888865         667899999875543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.16  E-value=0.0009  Score=52.00  Aligned_cols=98  Identities=13%  Similarity=0.190  Sum_probs=65.3

Q ss_pred             eecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCc-----ceeEEEeccCCce
Q 032092            4 GTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQS-----KNFTFKCHRDGSE   78 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~-----~~~~~~~h~~~~~   78 (147)
                      .+.+-.|-|-|+.++-+  +.+.  .+..|.++.|.-.++.+..|.-.|.|..  +|+|.+.     ....+ -|..   
T Consensus       230 ~G~sqqv~L~nvetg~~--qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~--iDLR~rnqG~~~~a~rl-yh~S---  299 (425)
T KOG2695|consen  230 VGLSQQVLLTNVETGHQ--QSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFV--IDLRCRNQGNGWCAQRL-YHDS---  299 (425)
T ss_pred             ccccceeEEEEeecccc--cccc--cchhHHHHHhcccCCeeEecccCCcEEE--EEeeecccCCCcceEEE-EcCc---
Confidence            35566788889888743  1222  2345888899888899999999999988  7777431     11111 1222   


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEec-CCCeEEEeCCCCcEEEeecCCcee
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQ-IHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsp-dg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                        +++++                              ..-. +++.|.+.+++|+|++||.+--++
T Consensus       300 --svtsl------------------------------q~Lq~s~q~LmaS~M~gkikLyD~R~~K~  333 (425)
T KOG2695|consen  300 --SVTSL------------------------------QILQFSQQKLMASDMTGKIKLYDLRATKC  333 (425)
T ss_pred             --chhhh------------------------------hhhccccceEeeccCcCceeEeeehhhhc
Confidence              34444                              2222 567889999999999999876555

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.14  E-value=0.023  Score=37.38  Aligned_cols=53  Identities=23%  Similarity=0.360  Sum_probs=40.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~   61 (147)
                      |++||+|..||+|+=.+-   +..+...  ..+.+|+-.+. ..|+.+..+|+|.+  ++.
T Consensus        18 LlvGs~D~~IRvf~~~e~---~~Ei~e~--~~v~~L~~~~~-~~F~Y~l~NGTVGv--Y~~   70 (111)
T PF14783_consen   18 LLVGSDDFEIRVFKGDEI---VAEITET--DKVTSLCSLGG-GRFAYALANGTVGV--YDR   70 (111)
T ss_pred             EEEecCCcEEEEEeCCcE---EEEEecc--cceEEEEEcCC-CEEEEEecCCEEEE--EeC
Confidence            689999999999987653   3334332  35788877665 68999999999999  654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.13  E-value=0.0018  Score=36.03  Aligned_cols=29  Identities=21%  Similarity=0.304  Sum_probs=26.0

Q ss_pred             cceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092           31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~   61 (147)
                      .+|.+++|+|..+.+|.|+.+|.|.|  +..
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v--~Rl   40 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLV--YRL   40 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEE--EEC
Confidence            46899999999999999999999999  544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.0021  Score=53.26  Aligned_cols=64  Identities=17%  Similarity=0.182  Sum_probs=47.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceE-EEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMR-CVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT   69 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~-~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~   69 (147)
                      +|++..+|.|-++-+.-+ +. -++..|. .+++ +++|.|||+.+|+|-.||+|+|  .|..++..+..
T Consensus        35 iA~~t~~gelli~R~n~q-Rl-wtip~p~-~~v~~sL~W~~DGkllaVg~kdG~I~L--~Dve~~~~l~~   99 (665)
T KOG4640|consen   35 IATRTEKGELLIHRLNWQ-RL-WTIPIPG-ENVTASLCWRPDGKLLAVGFKDGTIRL--HDVEKGGRLVS   99 (665)
T ss_pred             hheeccCCcEEEEEeccc-ee-EeccCCC-CccceeeeecCCCCEEEEEecCCeEEE--EEccCCCceec
Confidence            578888998888887733 32 2333233 3455 9999999999999999999999  77776655443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.0035  Score=53.21  Aligned_cols=49  Identities=14%  Similarity=0.114  Sum_probs=33.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEee
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHL   59 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~   59 (147)
                      ++-|+.+|.|++++.+.-  +...+.  +.    +.  .-+|+++++|+.||+|.|-..
T Consensus        52 ~~~GtH~g~v~~~~~~~~--~~~~~~--~s----~~--~~~Gey~asCS~DGkv~I~sl  100 (846)
T KOG2066|consen   52 FALGTHRGAVYLTTCQGN--PKTNFD--HS----SS--ILEGEYVASCSDDGKVVIGSL  100 (846)
T ss_pred             eeeccccceEEEEecCCc--cccccc--cc----cc--ccCCceEEEecCCCcEEEeec
Confidence            466889999999998753  211121  11    11  456999999999999999433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.03  E-value=0.016  Score=45.31  Aligned_cols=107  Identities=16%  Similarity=0.195  Sum_probs=63.0

Q ss_pred             CeEeecC----CeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEee----CCeEEEEeecCCCCcceeEEE
Q 032092            1 MVVGTAD----RNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSI----EGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         1 l~~gs~d----g~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~----dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      +.+|+.+    +.|++|++......+..... .......-|+++|++++|.+...    +|.|..+.++..+++....-.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            3567666    79999988332211222211 11123567999999999888766    568888666654333221111


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCC
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDS  140 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~  140 (147)
                      ......   .+.                              .++++|++++|+.+.. +|.|.++++.+
T Consensus        82 ~~~~g~---~p~------------------------------~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   82 VPSGGS---SPC------------------------------HIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             EEESSS---CEE------------------------------EEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eccCCC---CcE------------------------------EEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            000000   011                              2389999988888764 89999999976

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.02  E-value=0.013  Score=44.46  Aligned_cols=60  Identities=10%  Similarity=0.041  Sum_probs=40.4

Q ss_pred             eEeecCCeEEEEECCCC-ccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092            2 VVGTADRNLVVFNLQNP-QTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~-~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~   63 (147)
                      ++.+....|-.|.+... +...+....+-...=.+.+|+.....||+++.||++.|  ||+|.
T Consensus       174 ~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I--~DVR~  234 (344)
T KOG4532|consen  174 SSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI--YDVRN  234 (344)
T ss_pred             EEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE--EEecc
Confidence            34455667888888764 22222222222223467899999999999999999999  77775

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.99  E-value=0.044  Score=41.57  Aligned_cols=37  Identities=11%  Similarity=0.145  Sum_probs=31.6

Q ss_pred             eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092          110 KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       110 ~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ++.+.++.||||+.||+...+|.|.+|++-+.++.+.
T Consensus       230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~  266 (282)
T PF15492_consen  230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS  266 (282)
T ss_pred             CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence            5567889999999999999999999999977665543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=96.92  E-value=0.042  Score=42.91  Aligned_cols=140  Identities=13%  Similarity=0.157  Sum_probs=79.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC----CcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ----QSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~----~~~~~~~~~h~~~   76 (147)
                      +++.+.|.++|||=-+.-.+--..+....-.+.+++++.++...|.+|-..|++.=  +....    -..+..+..|...
T Consensus        39 v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte--fs~sedfnkm~~~r~~~~h~~~  116 (404)
T KOG1409|consen   39 VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE--FALSEDFNKMTFLKDYLAHQAR  116 (404)
T ss_pred             eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE--EEhhhhhhhcchhhhhhhhhcc
Confidence            46789999999997665322111221111236899999999999999999999876  33321    1112223334321


Q ss_pred             c--eEEeeccceeeeecCCCcce------------------------------------------eeeeeeeeeeeeece
Q 032092           77 S--ETCSVISFTSILAGDAPKYS------------------------------------------SFYKVKRLHLFVKSH  112 (147)
Q Consensus        77 ~--~~~~v~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~  112 (147)
                      .  ..+....-..++.|.|..+.                                          .+.+.-.....+.+|
T Consensus       117 v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h  196 (404)
T KOG1409|consen  117 VSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH  196 (404)
T ss_pred             eeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence            1  11111111122223222110                                          011111223355666


Q ss_pred             E----EEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092          113 V----IVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus       113 ~----~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      .    .++|-|..+.|.+|..|-.+.+||+--++
T Consensus       197 ~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  197 TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             ccceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence            4    58999999999999999999999986443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=96.90  E-value=0.0021  Score=52.70  Aligned_cols=78  Identities=14%  Similarity=0.125  Sum_probs=54.8

Q ss_pred             CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeee
Q 032092           30 KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFV  109 (147)
Q Consensus        30 ~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (147)
                      +..-+-+.|||.|.||++=...|.+ +  |--.+...+..|. |..      +--+                        
T Consensus       210 nWTetyv~wSP~GTYL~t~Hk~GI~-l--WGG~~f~r~~RF~-Hp~------Vq~i------------------------  255 (698)
T KOG2314|consen  210 NWTETYVRWSPKGTYLVTFHKQGIA-L--WGGESFDRIQRFY-HPG------VQFI------------------------  255 (698)
T ss_pred             cceeeeEEecCCceEEEEEecccee-e--ecCccHHHHHhcc-CCC------ceee------------------------
Confidence            3445678999999999998887754 6  6544434444443 442      2122                        


Q ss_pred             eceEEEEEecCCCeEEEeCC----------C-CcEEEeecCCceeeecC
Q 032092          110 KSHVIVLFVQIHHTFATAGS----------D-GAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       110 ~~~~~~~fspdg~~latg~~----------D-g~i~iWd~~~~~~~~~~  147 (147)
                            .|||..++|+|=+.          + ..++|||+.+|.+.++|
T Consensus       256 ------dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF  298 (698)
T KOG2314|consen  256 ------DFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF  298 (698)
T ss_pred             ------ecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce
Confidence                  88998888888654          1 47999999999988776

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=96.89  E-value=0.01  Score=46.76  Aligned_cols=105  Identities=11%  Similarity=-0.028  Sum_probs=57.1

Q ss_pred             EEEEEccCCCEEEEEeeCCeEEEEeecCCCC--cceeEEEeccCCceEEeecccee-eee-cCCC--cceeeeeeeeeee
Q 032092           34 RCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ--SKNFTFKCHRDGSETCSVISFTS-ILA-GDAP--KYSSFYKVKRLHL  107 (147)
Q Consensus        34 ~~la~spdg~~l~~g~~dg~i~i~~~d~~~~--~~~~~~~~h~~~~~~~~v~~~~~-~~~-~~~~--~~~~~~~~~~~~~  107 (147)
                      ..+..+|.++.+|++..+....+++++.+..  +....+..-+.......+..... +.+ +..|  .+..+...+....
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~  145 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE  145 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence            3456788899999999999988855554321  12222211111100000111111 111 1111  1112222223344


Q ss_pred             eeeceEE----EEEecCCCeEEEeCCCCcEEEeec
Q 032092          108 FVKSHVI----VLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus       108 ~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                      -+-||.+    ++|+||+++++|+.-|..|++=..
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y  180 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY  180 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCceEEEEec
Confidence            5567754    899999999999999999998654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=0.00081  Score=55.31  Aligned_cols=79  Identities=19%  Similarity=0.376  Sum_probs=57.4

Q ss_pred             CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC-----CcceeEEEeccCCceEEeeccceeeeecCCCcceeeeee
Q 032092           28 PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ-----QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKV  102 (147)
Q Consensus        28 ~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~-----~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  102 (147)
                      +|+..|+.++--.+.+.|++++.|.++++|.+.+.-     ..-.++++.|+.     +++++                 
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-----~i~~i-----------------  790 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-----PIHDI-----------------  790 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccC-----cccce-----------------
Confidence            344568888766678899999999999997665431     123456677765     57777                 


Q ss_pred             eeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092          103 KRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus       103 ~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                                   .|-.|.++++++  ||-|++||---+++
T Consensus       791 -------------gfL~~lr~i~Sc--D~giHlWDPFigr~  816 (1034)
T KOG4190|consen  791 -------------GFLADLRSIASC--DGGIHLWDPFIGRL  816 (1034)
T ss_pred             -------------eeeeccceeeec--cCcceeecccccch
Confidence                         788888888875  88999999644443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.86  E-value=0.0019  Score=49.84  Aligned_cols=80  Identities=18%  Similarity=0.157  Sum_probs=51.4

Q ss_pred             CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc-eeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeee
Q 032092           29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHL  107 (147)
Q Consensus        29 ~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~-~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  107 (147)
                      |.+.|++|+|+.|.+.++++ .|=+|.+|..+...+.. +...+.|.-+.....+++.                      
T Consensus       171 H~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSa----------------------  227 (460)
T COG5170         171 HPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSA----------------------  227 (460)
T ss_pred             ceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhc----------------------
Confidence            34568999999998888774 57889995555433221 1122223221111223444                      


Q ss_pred             eeeceEEEEEecCC-CeEEEeCCCCcEEEeecC
Q 032092          108 FVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKD  139 (147)
Q Consensus       108 ~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~  139 (147)
                              .|||.. +.|.-.++.|.|++=|++
T Consensus       228 --------eFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         228 --------EFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             --------ccCHhHcceEEEecCCCcEEehhhh
Confidence                    999975 778888889999999987

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.76  E-value=0.059  Score=39.74  Aligned_cols=94  Identities=15%  Similarity=0.063  Sum_probs=51.9

Q ss_pred             CCeEEEEECCCCccc-eeEec-CC-CCcceEEEEEccCCCEEEEEeeC--------CeEEEEeecCCCCcceeEEEeccC
Q 032092            7 DRNLVVFNLQNPQTE-FKRIN-SP-LKYQMRCVAAFPDQQGFWVGSIE--------GRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         7 dg~v~iwdi~~~~~~-~~~~~-~~-~~~~i~~la~spdg~~l~~g~~d--------g~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      .+.+.++|..+++.. +.... .. .....+.+++.|+|+.+++....        |.+..  ++.. ++.......-. 
T Consensus        59 ~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~--~~~~-~~~~~~~~~~~-  134 (246)
T PF08450_consen   59 SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR--IDPD-GKVTVVADGLG-  134 (246)
T ss_dssp             TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE--EETT-SEEEEEEEEES-
T ss_pred             cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE--ECCC-CeEEEEecCcc-
Confidence            355667799887431 11111 11 22357899999999977665543        33433  5554 22211111100 


Q ss_pred             CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCCcEEEeecC
Q 032092           76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDGAFNFWDKD  139 (147)
Q Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg~i~iWd~~  139 (147)
                           .++.+                              +|+||++.|. +-+..+.|..++..
T Consensus       135 -----~pNGi------------------------------~~s~dg~~lyv~ds~~~~i~~~~~~  164 (246)
T PF08450_consen  135 -----FPNGI------------------------------AFSPDGKTLYVADSFNGRIWRFDLD  164 (246)
T ss_dssp             -----SEEEE------------------------------EEETTSSEEEEEETTTTEEEEEEEE
T ss_pred             -----cccce------------------------------EECCcchheeecccccceeEEEecc
Confidence                 13344                              9999997654 66677888888875

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.75  E-value=0.014  Score=44.25  Aligned_cols=26  Identities=19%  Similarity=0.192  Sum_probs=24.1

Q ss_pred             EEEecCCCeEEEeCCCCcEEEeecCC
Q 032092          115 VLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus       115 ~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      ++||||+.+||-+.+.|+|+++|+..
T Consensus        49 l~WSpD~tlLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen   49 LAWSPDCTLLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             EEECCCCcEEEEEcCCCeEEEEeccc
Confidence            39999999999999999999999864

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.69  E-value=0.0064  Score=51.55  Aligned_cols=102  Identities=18%  Similarity=0.084  Sum_probs=66.5

Q ss_pred             CeEeecCCeEEEEECCCCccc-------------eeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcce
Q 032092            1 MVVGTADRNLVVFNLQNPQTE-------------FKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN   67 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~-------------~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~   67 (147)
                      +|+|+.||.+++--+.+....             +.+...+|+..|..+.|+.+.+.|-+++.+|-|.+  |=...+.=.
T Consensus        29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV--WmlykgsW~  106 (1189)
T KOG2041|consen   29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV--WMLYKGSWC  106 (1189)
T ss_pred             EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE--EeeecccHH
Confidence            588999999999887664321             01111245667999999999999999999999999  443322111


Q ss_pred             eEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092           68 FTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus        68 ~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd  137 (147)
                      ......++.   ..|.++                              +|+.||+.++-...||.|.+=.
T Consensus       107 EEMiNnRnK---SvV~Sm------------------------------sWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen  107 EEMINNRNK---SVVVSM------------------------------SWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             HHHhhCcCc---cEEEEE------------------------------EEcCCCcEEEEEEccCCEEEEe
Confidence            111111221   123444                              9999998888888888775543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.66  E-value=0.03  Score=45.08  Aligned_cols=57  Identities=9%  Similarity=-0.042  Sum_probs=33.5

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcc
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSK   66 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~   66 (147)
                      +..|.++|+..++.  ..+... ...-..-.|+|||+.++..+. .|.-.||-+|+..++.
T Consensus       256 ~~~Iy~~dl~~g~~--~~LT~~-~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~  313 (419)
T PRK04043        256 QPDIYLYDTNTKTL--TQITNY-PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV  313 (419)
T ss_pred             CcEEEEEECCCCcE--EEcccC-CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            45788889887742  233321 111234579999998776553 4544454477765443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.60  E-value=0.0044  Score=34.43  Aligned_cols=30  Identities=17%  Similarity=0.181  Sum_probs=26.7

Q ss_pred             EEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092          115 VLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus       115 ~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      ++|+|...+||.|..||.|.++.+ +++++.
T Consensus        17 ~~w~P~mdLiA~~t~~g~v~v~Rl-~~qriw   46 (47)
T PF12894_consen   17 MSWCPTMDLIALGTEDGEVLVYRL-NWQRIW   46 (47)
T ss_pred             EEECCCCCEEEEEECCCeEEEEEC-CCcCcc
Confidence            499999999999999999999998 666654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=96.56  E-value=0.013  Score=48.18  Aligned_cols=94  Identities=9%  Similarity=0.080  Sum_probs=63.4

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-----------CCeEEEEeecCCCCcceeEEEeccCCc
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-----------EGRVGVHHLDDSQQSKNFTFKCHRDGS   77 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-----------dg~i~i~~~d~~~~~~~~~~~~h~~~~   77 (147)
                      -|.+|.=.+..+ .+++.  |. .|.-+.|||+.+||++=+.           -..+.|  ||+++|.....|..-+...
T Consensus       232 GI~lWGG~~f~r-~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I--WDI~tG~lkrsF~~~~~~~  305 (698)
T KOG2314|consen  232 GIALWGGESFDR-IQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII--WDIATGLLKRSFPVIKSPY  305 (698)
T ss_pred             ceeeecCccHHH-HHhcc--CC-CceeeecCCccceEEEecCCccccCcccCCCceEEE--EEccccchhcceeccCCCc
Confidence            466776555433 23332  22 3889999999999998432           245777  8999999988887543321


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                         +..++                             +-||.|++++|.-..|+ |.|++..+.
T Consensus       306 ---~~WP~-----------------------------frWS~DdKy~Arm~~~s-isIyEtpsf  336 (698)
T KOG2314|consen  306 ---LKWPI-----------------------------FRWSHDDKYFARMTGNS-ISIYETPSF  336 (698)
T ss_pred             ---cccce-----------------------------EEeccCCceeEEeccce-EEEEecCce
Confidence               22222                             28999999999887754 888887653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.54  E-value=0.029  Score=43.26  Aligned_cols=80  Identities=16%  Similarity=0.166  Sum_probs=54.3

Q ss_pred             EEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeece
Q 032092           34 RCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH  112 (147)
Q Consensus        34 ~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (147)
                      ..++.+| .+..++.+---|+-.+ -||.++++....+.....                               .+|+||
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~-v~D~~~g~~~~~~~a~~g-------------------------------RHFyGH   55 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFAL-VFDCRTGQLLQRLWAPPG-------------------------------RHFYGH   55 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEE-EEEcCCCceeeEEcCCCC-------------------------------CEEecC
Confidence            3678888 4667777877787654 488888877665543211                               122222


Q ss_pred             EEEEEecCCCeEEEeCC-----CCcEEEeecC-CceeeecC
Q 032092          113 VIVLFVQIHHTFATAGS-----DGAFNFWDKD-SKQRLKVF  147 (147)
Q Consensus       113 ~~~~fspdg~~latg~~-----Dg~i~iWd~~-~~~~~~~~  147 (147)
                        -+|||||++|.|.-+     .|.|-|||.. +-+++.+|
T Consensus        56 --g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~   94 (305)
T PF07433_consen   56 --GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF   94 (305)
T ss_pred             --EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe
Confidence              289999999888644     4799999998 55666554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.52  E-value=0.043  Score=36.10  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=24.8

Q ss_pred             eEEEEEcc-C--C-CEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092           33 MRCVAAFP-D--Q-QGFWVGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus        33 i~~la~sp-d--g-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      |++|++.+ |  | +.|++|+.|..|++  |+-.  ..+.+++
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRv--f~~~--e~~~Ei~   40 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRV--FKGD--EIVAEIT   40 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEE--EeCC--cEEEEEe
Confidence            67787766 3  3 57999999999999  7543  3444444

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.46  E-value=0.064  Score=41.85  Aligned_cols=101  Identities=18%  Similarity=0.184  Sum_probs=63.4

Q ss_pred             CCeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEee---CCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092            7 DRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSI---EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~---dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v   82 (147)
                      ++-|++|++.+.+........ ......+-|+|+|+++.|.++..   +|.|.-+.||.++|+..  +..+.... .-+.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--~ln~~~~~-g~~p   91 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--FLNRQTLP-GSPP   91 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--EeeccccC-CCCC
Confidence            467999999853321111110 11234688999999988877654   57788888888766553  22221100 0011


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCC
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDS  140 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~  140 (147)
                      .                              .++.+++|++++++.. -|.|.++.+++
T Consensus        92 ~------------------------------yvsvd~~g~~vf~AnY~~g~v~v~p~~~  120 (346)
T COG2706          92 C------------------------------YVSVDEDGRFVFVANYHSGSVSVYPLQA  120 (346)
T ss_pred             e------------------------------EEEECCCCCEEEEEEccCceEEEEEccc
Confidence            2                              3499999999988877 57899999865

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.44  E-value=0.028  Score=48.60  Aligned_cols=98  Identities=14%  Similarity=0.115  Sum_probs=60.9

Q ss_pred             eEeecCCeEEEEECCCC-ccceeE--ecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCccee-EEEeccCCc
Q 032092            2 VVGTADRNLVVFNLQNP-QTEFKR--INSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF-TFKCHRDGS   77 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~-~~~~~~--~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~-~~~~h~~~~   77 (147)
                      .+|-.++.+..||.|-. .+.+..  .....+...+|+|-+.+| +||+|+.+|.|||  +|. .++.-. .|.+-.   
T Consensus       546 flGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRL--yd~-~g~~AKT~lp~lG---  618 (794)
T PF08553_consen  546 FLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRL--YDR-LGKRAKTALPGLG---  618 (794)
T ss_pred             EEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEe--ecc-cchhhhhcCCCCC---
Confidence            46778899999999974 332210  011122346788888776 8999999999999  663 232211 122211   


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                        -|+..+                              .-+.||+++++- .+..+.|.++.
T Consensus       619 --~pI~~i------------------------------Dvt~DGkwilaT-c~tyLlLi~t~  647 (794)
T PF08553_consen  619 --DPIIGI------------------------------DVTADGKWILAT-CKTYLLLIDTL  647 (794)
T ss_pred             --CCeeEE------------------------------EecCCCcEEEEe-ecceEEEEEEe
Confidence              134444                              889999875443 36788888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.37  E-value=0.033  Score=44.87  Aligned_cols=45  Identities=20%  Similarity=0.101  Sum_probs=39.0

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      .+.+|+.+|++++.|+.+.=|+|.|  +|+.++..+..++|-++...
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~L--iD~~~~~vvrmWKGYRdAqc  353 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLL--IDVARGIVVRMWKGYRDAQC  353 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEE--EECCCChhhhhhccCccceE
Confidence            4788999999999999888999999  99988888888898887543

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.37  E-value=0.032  Score=46.88  Aligned_cols=106  Identities=15%  Similarity=0.118  Sum_probs=63.8

Q ss_pred             CCeEEEEECCC----CccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            7 DRNLVVFNLQN----PQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         7 dg~v~iwdi~~----~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      +++|.+.|.++    +.+....+..+  .....+++||||++++ ++..++++.+  +|.++.+..  |.+ +..     
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkylyVanklS~tVSV--IDv~k~k~~--~~~-~~~-----  362 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYFIANGKLSPTVTV--IDVRKLDDL--FDG-KIK-----  362 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEEEEeCCCCCcEEE--EEChhhhhh--hhc-cCC-----
Confidence            46799999998    32333333322  2357899999999865 5566999999  777643321  110 000     


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      ..+.                +...+..-.+.+..+|.++|+...|---|..|..||+++
T Consensus       363 ~~~~----------------vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDA----------------VVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccce----------------EEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            0000                000011112223349999999888888899999999875

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.33  E-value=0.034  Score=48.30  Aligned_cols=131  Identities=8%  Similarity=0.031  Sum_probs=73.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCe---------EEEEeecCCCCcceeEEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGR---------VGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~---------i~i~~~d~~~~~~~~~~~   71 (147)
                      |.+|...|+|-+-|.++.+ +.+++. .|...|.++..  .|+.|++++-.++         |++  ||+|.-+.+..+.
T Consensus       190 lf~G~t~G~V~LrD~~s~~-~iht~~-aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkV--YDLRmmral~PI~  263 (1118)
T KOG1275|consen  190 LFCGDTRGTVFLRDPNSFE-TIHTFD-AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKV--YDLRMMRALSPIQ  263 (1118)
T ss_pred             EEeecccceEEeecCCcCc-eeeeee-ccccceeeeec--cCCeEEEeecccccccccccchhhh--hhhhhhhccCCcc
Confidence            3578889999999999985 456664 45555665554  4999998775554         566  6666433332222


Q ss_pred             eccCCce-EE--eeccceeeee--cCCCcce---eeeeeeeeeee---eeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092           72 CHRDGSE-TC--SVISFTSILA--GDAPKYS---SFYKVKRLHLF---VKSHVIVLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus        72 ~h~~~~~-~~--~v~~~~~~~~--~~~~~~~---~~~~~~~~~~~---~~~~~~~~fspdg~~latg~~Dg~i~iWd  137 (147)
                      -+..... -+  ...+...|++  |....+.   .-.+..+...+   -++...+.+|+.|+.+|-|..+|.|.+|-
T Consensus       264 ~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  264 FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            2211100 00  0111112222  1111111   11111122111   13345679999999999999999999997

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.32  E-value=0.058  Score=42.76  Aligned_cols=60  Identities=22%  Similarity=0.243  Sum_probs=37.9

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT   69 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~   69 (147)
                      .+++.+|.+.-+|+++++..-+. .  .. ....++  .+++.+.+++.+|.+..  +|..+++.+..
T Consensus       260 y~~~~~g~l~ald~~tG~~~W~~-~--~~-~~~~~~--~~~~~vy~~~~~g~l~a--ld~~tG~~~W~  319 (394)
T PRK11138        260 YALAYNGNLVALDLRSGQIVWKR-E--YG-SVNDFA--VDGGRIYLVDQNDRVYA--LDTRGGVELWS  319 (394)
T ss_pred             EEEEcCCeEEEEECCCCCEEEee-c--CC-CccCcE--EECCEEEEEcCCCeEEE--EECCCCcEEEc
Confidence            35567888999999988643221 1  11 111222  23667777888999888  88887766543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.19  E-value=0.015  Score=49.36  Aligned_cols=89  Identities=12%  Similarity=0.220  Sum_probs=58.3

Q ss_pred             CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeee
Q 032092           27 SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLH  106 (147)
Q Consensus        27 ~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  106 (147)
                      .|......|++|+.+..++|+|+.||.+++  +.+.+...-...++-..      +..+                  .++
T Consensus        11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKV--lKl~t~t~d~~~~glaa------~snL------------------smN   64 (1189)
T KOG2041|consen   11 IPNNVKLHCAEWNKESGYIACGGADGLLKV--LKLGTDTTDLNKSGLAA------ASNL------------------SMN   64 (1189)
T ss_pred             CCCCceEEEEEEcccCCeEEeccccceeEE--EEccccCCccccccccc------cccc------------------chh
Confidence            344567899999999999999999999999  55443222111111000      0111                  112


Q ss_pred             eeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092          107 LFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus       107 ~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      +.+.||.    .+.|+...+.|-|...+|.|.+|=+=++
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg  103 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG  103 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecc
Confidence            3345553    2589999899999999999999976444

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.18  E-value=0.042  Score=44.40  Aligned_cols=55  Identities=15%  Similarity=0.114  Sum_probs=38.2

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCc
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQS   65 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~   65 (147)
                      ..+.++|+.+++.+. .....  ..-..-+|||||+.++ +...||...||-+|...+.
T Consensus       218 ~~i~~~~l~~g~~~~-i~~~~--g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~  273 (425)
T COG0823         218 PRIYYLDLNTGKRPV-ILNFN--GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN  273 (425)
T ss_pred             ceEEEEeccCCccce-eeccC--CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence            358899999986542 22211  2234568999999876 5567899888888887544

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.10  E-value=0.1  Score=43.97  Aligned_cols=30  Identities=13%  Similarity=-0.028  Sum_probs=23.7

Q ss_pred             EEEEEecCCCeEEEeCC-CCcEEEeecCCce
Q 032092          113 VIVLFVQIHHTFATAGS-DGAFNFWDKDSKQ  142 (147)
Q Consensus       113 ~~~~fspdg~~latg~~-Dg~i~iWd~~~~~  142 (147)
                      -.++++|||++++.++. +.+|-|.|+++.+
T Consensus       324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             cceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            35799999987655554 8899999998755

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.06  E-value=0.051  Score=47.21  Aligned_cols=129  Identities=13%  Similarity=0.048  Sum_probs=80.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCccee-EEEeccCCc--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF-TFKCHRDGS--   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~-~~~~h~~~~--   77 (147)
                      |+.|-+-|.+.+|..++.+  .++...+|..+|.-+.|||+|..+.++..-|.+.+|.+|.. |+... ++-.|....  
T Consensus        74 La~gwe~g~~~v~~~~~~e--~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~-g~~q~~~~~~hel~~~l  150 (1416)
T KOG3617|consen   74 LAQGWEMGVSDVQKTNTTE--THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI-GEIQTSNIMQHELNDQL  150 (1416)
T ss_pred             HhhccccceeEEEecCCce--eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec-cccccchhhhhHhhcee
Confidence            4677788999999988754  45666677788999999999999999999999999988865 22111 111122110  


Q ss_pred             --eEE--eec-----cceeeee-cCCCcce---eeee-e-eeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           78 --ETC--SVI-----SFTSILA-GDAPKYS---SFYK-V-KRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        78 --~~~--~v~-----~~~~~~~-~~~~~~~---~~~~-~-~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                        .++  ++.     .+.+.+. |++.+..   .+++ + ++...+       .=.|+|..|..++.+|+|+--|-+
T Consensus       151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~k-------sgv~~g~~F~~~~~~GtVyyvdq~  220 (1416)
T KOG3617|consen  151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEK-------SGVPKGTEFLFAGKSGTVYYVDQN  220 (1416)
T ss_pred             eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccc-------cCCCCCcEEEEEcCCceEEEEcCC
Confidence              011  111     1122333 4443322   2331 1 010000       346899899999999999988843

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.02  E-value=0.19  Score=39.85  Aligned_cols=67  Identities=10%  Similarity=0.084  Sum_probs=41.4

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcce-E-----EEEEcc--CCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQM-R-----CVAAFP--DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i-~-----~la~sp--dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      .+++.+|.+.-+|.++++..-+. ........ .     -+.-+|  +++.+.+++.+|.+..  +|..+|+.+.+.+
T Consensus        73 y~~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~a--ld~~tG~~~W~~~  147 (394)
T PRK11138         73 YAADRAGLVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYA--LNAEDGEVAWQTK  147 (394)
T ss_pred             EEECCCCeEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCCCEEEE--EECCCCCCccccc
Confidence            45677888999999998753221 11110000 0     011112  3667788889999988  8998898887664

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.00  E-value=0.095  Score=46.77  Aligned_cols=53  Identities=9%  Similarity=0.072  Sum_probs=39.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGV   56 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i   56 (147)
                      +..+..+|.|-+-|..+...  ... ......|.+++||||++.++..+.++++.+
T Consensus        83 i~v~~~~G~iilvd~et~~~--eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~  135 (1265)
T KOG1920|consen   83 ICVITALGDIILVDPETLEL--EIV-GNVDNGISAASWSPDEELLALITGRQTLLF  135 (1265)
T ss_pred             EEEEecCCcEEEEcccccce--eee-eeccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence            35677889999998888642  222 112346999999999999999998888865

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.97  E-value=0.1  Score=38.48  Aligned_cols=80  Identities=18%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             eEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcce--eEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeee
Q 032092           33 MRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKN--FTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFV  109 (147)
Q Consensus        33 i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~--~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (147)
                      .+.|+|+||++.|. +-+..+.|..++++....+..  ..+...... . ..+..+                        
T Consensus       136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~-g~pDG~------------------------  189 (246)
T PF08450_consen  136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG-P-GYPDGL------------------------  189 (246)
T ss_dssp             EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-S-CEEEEE------------------------
T ss_pred             ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC-C-cCCCcc------------------------
Confidence            57899999998765 566788887755554332111  112111110 0 012333                        


Q ss_pred             eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092          110 KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus       110 ~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                            ++.++|++.++.-..+.|.++|-+ ++++.
T Consensus       190 ------~vD~~G~l~va~~~~~~I~~~~p~-G~~~~  218 (246)
T PF08450_consen  190 ------AVDSDGNLWVADWGGGRIVVFDPD-GKLLR  218 (246)
T ss_dssp             ------EEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred             ------eEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence                  888888887777777888888876 66654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.81  E-value=0.36  Score=37.17  Aligned_cols=101  Identities=18%  Similarity=0.222  Sum_probs=58.7

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v   82 (147)
                      +++.+++|.+|++...+.....-.......+.++...  ++++++|+.-..+.++.|+... ..+..+......   ..+
T Consensus       102 v~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~-~~l~~va~d~~~---~~v  175 (321)
T PF03178_consen  102 VVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN-NKLILVARDYQP---RWV  175 (321)
T ss_dssp             EEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT-E-EEEEEEESS----BEE
T ss_pred             EEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC-CEEEEEEecCCC---ccE
Confidence            4566799999999987622221111111245555544  7799999999999987677632 222222111100   012


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      .+                              +.|-+|++.++.+..+|.+.++...
T Consensus       176 ~~------------------------------~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  176 TA------------------------------AEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EE------------------------------EEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EE------------------------------EEEecCCcEEEEEcCCCeEEEEEEC
Confidence            22                              2677666788888889998888765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.80  E-value=0.14  Score=39.67  Aligned_cols=29  Identities=24%  Similarity=0.319  Sum_probs=22.7

Q ss_pred             eEEEEEccCCCEEEEEee-CCeEEEEeecC
Q 032092           33 MRCVAAFPDQQGFWVGSI-EGRVGVHHLDD   61 (147)
Q Consensus        33 i~~la~spdg~~l~~g~~-dg~i~i~~~d~   61 (147)
                      -+.||||||++.|....+ .+.|.-+++|.
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence            578999999988777665 47887766774

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.77  E-value=0.7  Score=36.21  Aligned_cols=101  Identities=11%  Similarity=0.147  Sum_probs=61.3

Q ss_pred             cCCeEEEEECCCCccceeEec---C-C----CCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCC
Q 032092            6 ADRNLVVFNLQNPQTEFKRIN---S-P----LKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~---~-~----~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      -+++|-+|........+..++   . +    .....-+|.++|||++|.++.- ...|.++.+|...++.  ++.+....
T Consensus       211 L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L--~~~~~~~t  288 (346)
T COG2706         211 LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL--ELVGITPT  288 (346)
T ss_pred             cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE--EEEEEecc
Confidence            377888888876322222221   1 1    1234678999999999877643 4577776667665543  23222211


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC-cEEEeecC
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG-AFNFWDKD  139 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg-~i~iWd~~  139 (147)
                       +...+...                              .|+|+|++|+.++.|+ .|.++-.+
T Consensus       289 -eg~~PR~F------------------------------~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         289 -EGQFPRDF------------------------------NINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             -CCcCCccc------------------------------eeCCCCCEEEEEccCCCcEEEEEEc
Confidence             00113444                              8999999999998875 57777653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.77  E-value=0.013  Score=50.71  Aligned_cols=72  Identities=13%  Similarity=0.191  Sum_probs=49.6

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS  111 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (147)
                      .+.+++|+|..-.|+.|=.-|.+.+  |...+.+.......|+     .++..+                          
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v--~~~~~~e~htv~~th~-----a~i~~l--------------------------  107 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDV--QKTNTTETHTVVETHP-----APIQGL--------------------------  107 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEE--EecCCceeeeeccCCC-----CCceeE--------------------------
Confidence            3678999998778888888888888  5443211111111232     133333                          


Q ss_pred             eEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092          112 HVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus       112 ~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                          .|||+|+.|.|+..=|.+.+|-...
T Consensus       108 ----~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen  108 ----DWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ----EecCCCCeEEEcCCCceeEEEEeee
Confidence                9999999999999999999998753

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.76  E-value=0.25  Score=37.58  Aligned_cols=105  Identities=15%  Similarity=0.112  Sum_probs=72.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ++.|+..+.+.--|.++++..-+.+.   ...+.+-|+- -|++++.|.-.|.+++  ++..+|.....|+....     
T Consensus        26 v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYf--l~~~tGs~~w~f~~~~~-----   94 (354)
T KOG4649|consen   26 VVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYF--LCVKTGSQIWNFVILET-----   94 (354)
T ss_pred             EEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEE--EEecchhheeeeeehhh-----
Confidence            35678888888889998864222221   1123332221 4889999999999987  88888877776653211     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                       +-.                             +...-|++..+..|+-|++.+.-|.++..+++.
T Consensus        95 -vk~-----------------------------~a~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   95 -VKV-----------------------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             -hcc-----------------------------ceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence             111                             115668899999999999999999998887763

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.74  E-value=0.29  Score=40.16  Aligned_cols=68  Identities=18%  Similarity=0.215  Sum_probs=39.8

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCc-ceEEEEEcc--CCCEEEEEee---------CCeEEEEeecCCCCcceeE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKY-QMRCVAAFP--DQQGFWVGSI---------EGRVGVHHLDDSQQSKNFT   69 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~-~i~~la~sp--dg~~l~~g~~---------dg~i~i~~~d~~~~~~~~~   69 (147)
                      +.++.+|.|+-+|.++++..-+ ....... .-..+.-+|  .+..+++|+.         +|.+..  +|..+|+.+..
T Consensus       114 ~v~~~~g~v~AlD~~TG~~~W~-~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~a--lD~~TG~~~W~  190 (488)
T cd00216         114 FFGTFDGRLVALDAETGKQVWK-FGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRA--YDVETGKLLWR  190 (488)
T ss_pred             EEecCCCeEEEEECCCCCEeee-ecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEE--EECCCCceeeE
Confidence            4567889999999999975322 2111110 000112222  1355556653         567766  89999998887


Q ss_pred             EEe
Q 032092           70 FKC   72 (147)
Q Consensus        70 ~~~   72 (147)
                      +..
T Consensus       191 ~~~  193 (488)
T cd00216         191 FYT  193 (488)
T ss_pred             eec
Confidence            754

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.71  E-value=0.36  Score=39.31  Aligned_cols=129  Identities=13%  Similarity=0.092  Sum_probs=51.7

Q ss_pred             CeEEEEECCCCc-----c----ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            8 RNLVVFNLQNPQ-----T----EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         8 g~v~iwdi~~~~-----~----~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      ..|+.+|+++..     .    +.+.+. ......++|+++|+|+.+++ ..||...|  +.....+....  +... ..
T Consensus         2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg-~~~~~p~~ls~npngr~v~V-~g~geY~i--yt~~~~r~k~~--G~g~-~~   74 (443)
T PF04053_consen    2 NEIRTANLKNISEIKDGERLPLSVKELG-SCEIYPQSLSHNPNGRFVLV-CGDGEYEI--YTALAWRNKAF--GSGL-SF   74 (443)
T ss_dssp             TEEEEEE--S-----TTS-B----EEEE-E-SS--SEEEE-TTSSEEEE-EETTEEEE--EETTTTEEEEE--EE-S-EE
T ss_pred             CceEEEECcCCCccCCCceeeEEeccCC-CCCcCCeeEEECCCCCEEEE-EcCCEEEE--EEccCCccccc--Ccee-EE
Confidence            468888888761     1    111111 11234689999999999999 55677777  44322222211  1111 11


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeee-eeeeceEEE-EEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLH-LFVKSHVIV-LFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +|.......+. .+...+.++++.+... ..+.-..++ ...+ |++|+..+.+ .|.+||.++++.+++
T Consensus        75 vw~~~n~yAv~-~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~i~~  141 (443)
T PF04053_consen   75 VWSSRNRYAVL-ESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG-GNLLGVKSSD-FICFYDWETGKLIRR  141 (443)
T ss_dssp             EE-TSSEEEEE--TTS-EEEEETTEE-TT-----SS-EEEEE--SSSEEEEETT-EEEEE-TTT--EEEE
T ss_pred             EEecCccEEEE-ECCCeEEEEEcCccccceEEcCCcccceEEc-CcEEEEECCC-CEEEEEhhHcceeeE
Confidence            22221111111 1123344444332211 111111000 1111 7776666544 788888888877754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.70  E-value=0.014  Score=50.65  Aligned_cols=43  Identities=23%  Similarity=0.411  Sum_probs=38.0

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      .-+|++|+-+.+.|++|+-.|.|++  ++..+|.......||...
T Consensus      1103 ~fTc~afs~~~~hL~vG~~~Geik~--~nv~sG~~e~s~ncH~Sa 1145 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKI--FNVSSGSMEESVNCHQSA 1145 (1516)
T ss_pred             ceeeEEeecCCceEEeeeccceEEE--EEccCccccccccccccc
Confidence            4689999999999999999999999  888888888888888753

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.69  E-value=0.041  Score=47.02  Aligned_cols=107  Identities=19%  Similarity=0.291  Sum_probs=64.6

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCC--CEEEEEeeCCeEEEEeecCCC-CcceeEEEeccCCceE
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQ--QGFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSET   79 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg--~~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~~~~   79 (147)
                      .|+.-| +.+-|+..+-.|..-+..---.++-.+.|+|..  .+-++......-.+|++-..+ ......+.+|..    
T Consensus        41 lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsr----  115 (1081)
T KOG0309|consen   41 LASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSR----  115 (1081)
T ss_pred             hhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCcc----
Confidence            334434 456677664333332221111457788898863  455555555555575554333 333444556654    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc-eeee
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK-QRLK  145 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~-~~~~  145 (147)
                       .+..+                              .|+|.. -.+||++.|-.+..||+++. ..++
T Consensus       116 -aitd~------------------------------n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y  152 (1081)
T KOG0309|consen  116 -AITDI------------------------------NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY  152 (1081)
T ss_pred             -ceecc------------------------------ccCCCCCcceeeccccccceeeeccCCCccee
Confidence             46666                              899987 57999999999999999874 3343

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.68  E-value=0.024  Score=48.94  Aligned_cols=56  Identities=11%  Similarity=0.144  Sum_probs=40.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~   61 (147)
                      ||+|+.+|.|||||- .+.+. ++...+...||..|..+.||+++++ +.+..+.|  +++
T Consensus       591 iavgs~~G~IRLyd~-~g~~A-KT~lp~lG~pI~~iDvt~DGkwila-Tc~tyLlL--i~t  646 (794)
T PF08553_consen  591 IAVGSNKGDIRLYDR-LGKRA-KTALPGLGDPIIGIDVTADGKWILA-TCKTYLLL--IDT  646 (794)
T ss_pred             EEEEeCCCcEEeecc-cchhh-hhcCCCCCCCeeEEEecCCCcEEEE-eecceEEE--EEE
Confidence            689999999999994 44332 2332344579999999999998765 44577777  554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.62  E-value=0.17  Score=41.58  Aligned_cols=27  Identities=19%  Similarity=0.265  Sum_probs=22.7

Q ss_pred             CCCeEEEeCCCCcEEEeecCCceeeec
Q 032092          120 IHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       120 dg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+..+..|+.||.++.+|.++|+.+.+
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW~  431 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELWK  431 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceeeE
Confidence            456788888999999999999988765

The alignment model contains an 8-bladed beta-propeller.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=95.49  E-value=0.13  Score=44.25  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=65.7

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC------C------CEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD------Q------QGFWVGSIEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd------g------~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      +....|.+-|.++.+ .++.++ .|+..|+++.|.|-      +      -.+|+++..|.|.+  ||...+..+..+..
T Consensus        32 gshslV~VVDs~s~q-~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil--~d~~~~s~~~~l~~  107 (1062)
T KOG1912|consen   32 GSHSLVSVVDSRSLQ-LIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL--VDFVLASVINWLSH  107 (1062)
T ss_pred             ecCceEEEEehhhhh-hhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE--EEehhhhhhhhhcC
Confidence            334678899999875 345554 34456899998773      1      25788889999999  45444444444443


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEec---CC-CeEEEeCCCCcEEEeecCCceeeecC
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQ---IH-HTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsp---dg-~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      |..     ++-.+                              .|-|   +. -.|+.=..-.++.+||+.+|+++..|
T Consensus       108 ~~~-----~~qdl------------------------------~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~  151 (1062)
T KOG1912|consen  108 SND-----SVQDL------------------------------CWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY  151 (1062)
T ss_pred             CCc-----chhhe------------------------------eeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence            332     22222                              3332   33 34555566779999999999887643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.20  E-value=0.012  Score=51.17  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=45.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCe--EEEEeecCCC-CcceeEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGR--VGVHHLDDSQ-QSKNFTF   70 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~--i~i~~~d~~~-~~~~~~~   70 (147)
                      |++|+..|.|++|++.+|... ... ..|+.+|+-|.-+-||..+++.+.-.+  ..+  |+..+ +.+..+|
T Consensus      1116 L~vG~~~Geik~~nv~sG~~e-~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL--W~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1116 LAVGSHAGEIKIFNVSSGSME-ESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL--WDASSTGGPRHSF 1184 (1516)
T ss_pred             EEeeeccceEEEEEccCcccc-ccc-cccccccccccccCCcceeeeeccccCchHHH--hccccccCccccc
Confidence            689999999999999998642 222 346667899998999988776654333  556  55542 3344444

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.20  E-value=0.25  Score=38.77  Aligned_cols=32  Identities=13%  Similarity=0.291  Sum_probs=22.5

Q ss_pred             EEEecCC-CeEEE-eCCCCcEEEeecCCceeeec
Q 032092          115 VLFVQIH-HTFAT-AGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       115 ~~fspdg-~~lat-g~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ++.+.|. .+|.+ ...++.+.+||..+++.+++
T Consensus       294 i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  294 IAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             EEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred             EEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence            3888877 45644 45689999999999998764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.11  E-value=0.47  Score=41.24  Aligned_cols=60  Identities=12%  Similarity=0.111  Sum_probs=38.4

Q ss_pred             CeEeecCCeEEEE--ECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092            1 MVVGTADRNLVVF--NLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         1 l~~gs~dg~v~iw--di~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      +|+|-.+|.|..+  |+-+..-....+....+.||+.+++..+++..+-...-..|++  +.+.
T Consensus       140 Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~--y~l~  201 (933)
T KOG2114|consen  140 IVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVML--YSLS  201 (933)
T ss_pred             EEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEE--EEec
Confidence            4788899999887  3332211122344456679999999999887333333467888  5544

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.97  E-value=0.065  Score=45.25  Aligned_cols=61  Identities=20%  Similarity=0.284  Sum_probs=46.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC----CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS----PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~----~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~   61 (147)
                      +|.|+..|.|.++-++....+-..+..    .|+..|++++|++|+..+.+|...|+|.+.-+|.
T Consensus        91 vAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   91 VAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            366788899999998875432222211    2345799999999999999999999999866665

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.96  E-value=0.14  Score=42.49  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=24.2

Q ss_pred             CCCeEEEeCCCCcEEEeecCCceeeec
Q 032092          120 IHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       120 dg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +..+|++-+.|+++|+||+++++++++
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            558899999999999999999999765

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=94.93  E-value=0.033  Score=47.72  Aligned_cols=108  Identities=12%  Similarity=0.128  Sum_probs=68.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE---------EEeeCCeEEEEeecCCCCcceeEEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW---------VGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~---------~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      +|+|...|+|-++|+.++.. .+.+ +-|...|+++.|--+...+-         +|.--+.+.+  -|+++|.. ..|+
T Consensus       440 vAvGT~sGTV~vvdvst~~v-~~~f-svht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~v--tdLrtGls-k~fR  514 (1062)
T KOG1912|consen  440 VAVGTNSGTVDVVDVSTNAV-AASF-SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVV--TDLRTGLS-KRFR  514 (1062)
T ss_pred             EEeecCCceEEEEEecchhh-hhhh-cccccceeeeeeccceeEEEeeeccccccccceeeeEEE--EEcccccc-cccc
Confidence            47899999999999999752 1222 23445688888764433221         2233344555  67776644 3344


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      +.+. ....++..+                              .-|..|++||-.=.|..+.+||+++..++
T Consensus       515 ~l~~-~despI~~i------------------------------rvS~~~~yLai~Fr~~plEiwd~kt~~~l  556 (1062)
T KOG1912|consen  515 GLQK-PDESPIRAI------------------------------RVSSSGRYLAILFRREPLEIWDLKTLRML  556 (1062)
T ss_pred             cCCC-CCcCcceee------------------------------eecccCceEEEEecccchHHHhhccchHH
Confidence            3221 111234444                              66778899999999999999999876654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.88  E-value=0.24  Score=40.96  Aligned_cols=57  Identities=21%  Similarity=0.367  Sum_probs=37.9

Q ss_pred             eEeecCCeEEEEECCCCccc-eeEecC---CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092            2 VVGTADRNLVVFNLQNPQTE-FKRINS---PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~-~~~~~~---~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~   61 (147)
                      ++|-.|+.|.-||.|-..+. ....++   ..+..-.|.+-..+| ++|+||.+|.|+|  +|.
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRL--Ydr  458 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRL--YDR  458 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEe--ehh
Confidence            46778999999999865431 111111   112235677766655 8999999999999  665

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.62  E-value=0.13  Score=27.93  Aligned_cols=30  Identities=23%  Similarity=0.410  Sum_probs=25.3

Q ss_pred             ceEEEEEccC-C--CEEEEEeeCCeEEEEeecCCC
Q 032092           32 QMRCVAAFPD-Q--QGFWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus        32 ~i~~la~spd-g--~~l~~g~~dg~i~i~~~d~~~   63 (147)
                      .++++.|||+ +  +.|+..=..|.|.|  +|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi--~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHI--VDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEE--EEccc
Confidence            4899999985 4  68888888899999  88874

It contains a characteristic DLL sequence motif.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.43  E-value=0.19  Score=39.34  Aligned_cols=53  Identities=8%  Similarity=0.130  Sum_probs=36.0

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ   64 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~   64 (147)
                      ..+.+.|||+.+++.  ..+... ...+....|||||+.+|... ++.|.+  .+..++
T Consensus        21 ~~~~y~i~d~~~~~~--~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~--~~~~~~   73 (353)
T PF00930_consen   21 FKGDYYIYDIETGEI--TPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYL--RDLATG   73 (353)
T ss_dssp             EEEEEEEEETTTTEE--EESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEE--ESSTTS
T ss_pred             cceeEEEEecCCCce--EECcCC-ccccccceeecCCCeeEEEe-cCceEE--EECCCC
Confidence            346789999999752  233222 23578899999999998865 577877  776554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=94.41  E-value=0.82  Score=37.54  Aligned_cols=94  Identities=13%  Similarity=0.076  Sum_probs=59.7

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCC-eEEEEeecCCCCcceeEEEeccCCceEEeeccce
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG-RVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFT   86 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg-~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~   86 (147)
                      |+..|.+.-.+-    .+.-+++..|+=..+.-+++.++.|..|| .+-|  +|...++. ..+...-     ..+.++ 
T Consensus       341 GkaFi~~~~~~~----~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~i--yd~~~~e~-kr~e~~l-----g~I~av-  407 (668)
T COG4946         341 GKAFIMRPWDGY----SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGI--YDKDGGEV-KRIEKDL-----GNIEAV-  407 (668)
T ss_pred             CcEEEECCCCCe----eEEcCCCCceEEEEEccCCcceEEeccCCceEEE--EecCCceE-EEeeCCc-----cceEEE-
Confidence            555565555442    12223334577777888888899999999 7888  66654433 2222110     013333 


Q ss_pred             eeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           87 SILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                                                   ..+|||+.++.+.....+-+.|++++..
T Consensus       408 -----------------------------~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         408 -----------------------------KVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             -----------------------------EEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence                                         8899999988887777888888887643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.39  E-value=1.3  Score=36.97  Aligned_cols=65  Identities=18%  Similarity=0.295  Sum_probs=41.2

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcce----------EEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQM----------RCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i----------~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      .+++.++.|.-.|.++++..-+ ........+          +.+++.  +..++.++.|+.+.-  +|.++|+.+..+.
T Consensus        73 yv~s~~g~v~AlDa~TGk~lW~-~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~A--LDa~TGk~~W~~~  147 (527)
T TIGR03075        73 YVTTSYSRVYALDAKTGKELWK-YDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVA--LDAKTGKVVWSKK  147 (527)
T ss_pred             EEECCCCcEEEEECCCCceeeE-ecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEE--EECCCCCEEeecc
Confidence            4567788899999999975322 111110111          112332  456778888998877  8999998887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.39  E-value=1.5  Score=34.78  Aligned_cols=98  Identities=13%  Similarity=0.127  Sum_probs=61.6

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee---CCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI---EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~---dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v   82 (147)
                      .++.|.+.|...... .+.+..+  .....++++|+++.+.++..   ++++.+  +|..+++...+...-.      ..
T Consensus        94 ~~~~v~vid~~~~~~-~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsv--id~~t~~~~~~~~vG~------~P  162 (381)
T COG3391          94 DSNTVSVIDTATNTV-LGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSV--IDAATNKVTATIPVGN------TP  162 (381)
T ss_pred             CCCeEEEEcCcccce-eeEeeec--cCCceEEECCCCCEEEEEecccCCceEEE--EeCCCCeEEEEEecCC------Cc
Confidence            357888888666532 2333222  13578999999977666655   688877  8887766655432100      11


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCCcEEEeecCCceee
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg~i~iWd~~~~~~~  144 (147)
                      ..+                              ++.|+|+.+. +-..++.|.+.|.+.....
T Consensus       163 ~~~------------------------------a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         163 TGV------------------------------AVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             ceE------------------------------EECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            233                              8999997444 4446788989887665443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.19  E-value=1.1  Score=37.39  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=23.3

Q ss_pred             CCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          120 IHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       120 dg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .|.++..++.||.++.+|.++|+.+.++
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~  498 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKF  498 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence            4456777888999999999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.06  E-value=0.23  Score=36.75  Aligned_cols=52  Identities=13%  Similarity=0.079  Sum_probs=31.6

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecC
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~   61 (147)
                      +.||.|+-++++.-+...  ...+   .+.++.--| -+..+++|+.+|.|.+|.|+.
T Consensus        37 sa~~~v~~~~~~k~k~s~--rse~---~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~   89 (238)
T KOG2444|consen   37 SADGLVRERKVRKHKESC--RSER---FIDEGQRVVTASAKLMVGTSDGAVYVFNWNL   89 (238)
T ss_pred             cCCcccccchhhhhhhhh--hhhh---hhhcceeecccCceEEeecccceEEEecCCc
Confidence            677888888887643211  0000   122221112 257899999999999987774

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=93.92  E-value=2.7  Score=33.73  Aligned_cols=145  Identities=14%  Similarity=0.123  Sum_probs=73.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeE-ecC-----CCCcceEEEEEcc-----CC---CEEEEEeeCCeEEEEeecCC-CCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKR-INS-----PLKYQMRCVAAFP-----DQ---QGFWVGSIEGRVGVHHLDDS-QQS   65 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~-~~~-----~~~~~i~~la~sp-----dg---~~l~~g~~dg~i~i~~~d~~-~~~   65 (147)
                      +|+|.++|.+.|.|+|.+...++. +..     .....++++.|+.     |+   -++.+|+..|.+.++.+.+. .+.
T Consensus       100 vaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~  179 (395)
T PF08596_consen  100 VAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGR  179 (395)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-
T ss_pred             EEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCc
Confidence            478899999999999887542221 111     1123478888863     33   46889999999999666543 232


Q ss_pred             ceeEEEecc----CCce-EEeeccc----------------------eeeeecCCCcceeeeee--eeeeeeeeceE---
Q 032092           66 KNFTFKCHR----DGSE-TCSVISF----------------------TSILAGDAPKYSSFYKV--KRLHLFVKSHV---  113 (147)
Q Consensus        66 ~~~~~~~h~----~~~~-~~~v~~~----------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---  113 (147)
                      ....+.+..    .... ..+++..                      ..++.-++..++++...  +..+.++..+.   
T Consensus       180 f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~  259 (395)
T PF08596_consen  180 FSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCS  259 (395)
T ss_dssp             EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEE
T ss_pred             eEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccc
Confidence            222232221    1100 0011000                      11222333344444422  22333443322   


Q ss_pred             EEEE-----ecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092          114 IVLF-----VQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus       114 ~~~f-----spdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      ++.+     ...+..|++=..||.|+++-+=..+.+.
T Consensus       260 ~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~  296 (395)
T PF08596_consen  260 SASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK  296 (395)
T ss_dssp             EEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred             eEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence            2444     2355778888899999999887766554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.76  E-value=3  Score=36.18  Aligned_cols=93  Identities=12%  Similarity=0.074  Sum_probs=50.3

Q ss_pred             CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--eEEeeccceeeeecCCCcceeeeeeeeeee
Q 032092           30 KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--ETCSVISFTSILAGDAPKYSSFYKVKRLHL  107 (147)
Q Consensus        30 ~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  107 (147)
                      .+.|..|.+||+|+.+|..+..|-..+ .+-.+-|+. ..|.+-+...  ...++... ++.++...      .      
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~-~~~~~g~~~i~Crt~~v~~~-~~~~~~~~------~------  148 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKN-GEFEDGKKEINCRTVPVDER-FFTSNSSL------E------  148 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCcc-ccccCCCcceeEEEEEechh-hccCCCCc------e------
Confidence            356899999999999998888665544 121111211 1122111110  01122221 00000000      0      


Q ss_pred             eeeceEEEEEecCC---CeEEEeCCCCcEEEeecCCc
Q 032092          108 FVKSHVIVLFVQIH---HTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus       108 ~~~~~~~~~fspdg---~~latg~~Dg~i~iWd~~~~  141 (147)
                          ...+.|||.+   .+|+.=.+|+++|+||+.+.
T Consensus       149 ----i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  149 ----IKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             ----EEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence                1235999974   77887789999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.60  E-value=0.015  Score=48.64  Aligned_cols=102  Identities=14%  Similarity=0.234  Sum_probs=60.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecC-CCCc-ceeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDD-SQQS-KNFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~-~~~~-~~~~~~~h~~~~   77 (147)
                      +.+|...+.+.++|+|........+.   ..-++-+.+.| .++++++-. ||.|.+  ||. ++-+ +........+  
T Consensus       169 vlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~nY~cs~~-dg~iAi--wD~~rnienpl~~i~~~~N--  240 (783)
T KOG1008|consen  169 VLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSPNYFCSNS-DGDIAI--WDTYRNIENPLQIILRNEN--  240 (783)
T ss_pred             hhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCCCceeccc-cCceee--ccchhhhccHHHHHhhCCC--
Confidence            35677778999999996422112221   12367788889 788888766 999999  773 2211 1111111111  


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCC-CcEEEeecC
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSD-GAFNFWDKD  139 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~D-g~i~iWd~~  139 (147)
                            ..                       -+.|+.++|+|.. .++|+...| ++|+++|+.
T Consensus       241 ------~~-----------------------~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  241 ------KK-----------------------PKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ------Cc-----------------------ccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence                  00                       0123345999965 567777776 589999975

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.35  E-value=0.034  Score=46.63  Aligned_cols=103  Identities=12%  Similarity=0.171  Sum_probs=64.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEee----CCeEEEEeecCCCC--cc--eeEEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSI----EGRVGVHHLDDSQQ--SK--NFTFK   71 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~----dg~i~i~~~d~~~~--~~--~~~~~   71 (147)
                      |++|..+|.|-+-.++...-.-+....++..+-+++||+| |.+.||+|-.    |-.+.|  ||..++  .+  ...|.
T Consensus        73 lavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I--wdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   73 LAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI--WDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc--eecccccCCCccccccc
Confidence            5788999999999998753211222223334678999998 5677888743    455778  454332  11  11111


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      +.                                  .+.+.++++|-.+.+++.+|..-..+.+.|++
T Consensus       151 ~~----------------------------------~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR  184 (783)
T KOG1008|consen  151 SS----------------------------------TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR  184 (783)
T ss_pred             cc----------------------------------cccCccccccccCcchhhcccccchhhhhhhh
Confidence            10                                  11222344787788999999888899999986

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.13  E-value=0.5  Score=34.79  Aligned_cols=61  Identities=15%  Similarity=0.071  Sum_probs=40.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeE------ecC------CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKR------INS------PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~------~~~------~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      |++-+.+|.+++||+.+++..++.      +..      .....|.++.++.+|.-+++- .+|..+.|+-|..
T Consensus        25 Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~   97 (219)
T PF07569_consen   25 LLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLG   97 (219)
T ss_pred             EEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccccc
Confidence            345688999999999998653322      110      122357888899888777664 4578888544443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.12  E-value=3  Score=31.69  Aligned_cols=59  Identities=12%  Similarity=0.095  Sum_probs=35.6

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      ++...+||..+.++ ..++.-+.+.  .-|+  .|++.|+.++...++..  +|+.+.+...+++.
T Consensus       109 ~~~~f~yd~~tl~~-~~~~~y~~EG--WGLt--~dg~~Li~SDGS~~L~~--~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  109 EGTGFVYDPNTLKK-IGTFPYPGEG--WGLT--SDGKRLIMSDGSSRLYF--LDPETFKEVRTIQV  167 (264)
T ss_dssp             SSEEEEEETTTTEE-EEEEE-SSS----EEE--ECSSCEEEE-SSSEEEE--E-TTT-SEEEEEE-
T ss_pred             CCeEEEEccccceE-EEEEecCCcc--eEEE--cCCCEEEEECCccceEE--ECCcccceEEEEEE
Confidence            57788999998854 4444433222  3444  67888888776677766  99987766665543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.11  E-value=1.1  Score=35.71  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=23.9

Q ss_pred             eEEEEEccCCCEEEEE-eeCCe----EEEEeecCCCCcce
Q 032092           33 MRCVAAFPDQQGFWVG-SIEGR----VGVHHLDDSQQSKN   67 (147)
Q Consensus        33 i~~la~spdg~~l~~g-~~dg~----i~i~~~d~~~~~~~   67 (147)
                      +...++||||+++|.+ +..|.    +++  +|+.+++.+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v--~Dl~tg~~l  163 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRV--FDLETGKFL  163 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEE--EETTTTEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEE--EECCCCcCc
Confidence            4568899999999865 44454    666  888877543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.93  E-value=3.4  Score=34.63  Aligned_cols=96  Identities=11%  Similarity=0.139  Sum_probs=51.9

Q ss_pred             cceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc--eeeeecCCCcceeeeeeeeeeee
Q 032092           31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF--TSILAGDAPKYSSFYKVKRLHLF  108 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~  108 (147)
                      +.|..+..||.|..++..+.+|.+.+. .-.|-|+. ..|+..+. ...+.+.++  -+++++.  .+    .+.     
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMe-Lp~rwG~~-s~~eDgk~-~v~CRt~~i~~~~ftss~--~l----tl~-----  169 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVME-LPKRWGKN-SEFEDGKS-TVNCRTTPVAERFFTSST--SL----TLK-----  169 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEE-chhhcCcc-ceecCCCc-eEEEEeecccceeeccCC--ce----eee-----
Confidence            457788899999999999999987663 21121221 11221110 001111111  0011110  00    111     


Q ss_pred             eeceEEEEEecCC---CeEEEeCCCCcEEEeecCCceeee
Q 032092          109 VKSHVIVLFVQIH---HTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus       109 ~~~~~~~~fspdg---~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                           .++|||+.   ..|.-=.+|.+||+||+.+...++
T Consensus       170 -----Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  170 -----QAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             -----eccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence                 24999975   566666789999999987665543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=92.82  E-value=0.77  Score=40.83  Aligned_cols=72  Identities=8%  Similarity=0.117  Sum_probs=46.8

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS  111 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (147)
                      .|.++.+-++...++.+..+|.|.+.-.|...........|.        +.                          .|
T Consensus        77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~--------vd--------------------------~G  122 (928)
T PF04762_consen   77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS--------VD--------------------------SG  122 (928)
T ss_pred             cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE--------Ec--------------------------Cc
Confidence            588889999999999999999998832222111121222221        11                          11


Q ss_pred             eEEEEEecCCCeEEEeCCCCcEEEee
Q 032092          112 HVIVLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus       112 ~~~~~fspdg~~latg~~Dg~i~iWd  137 (147)
                      ...++||||+.+||-...++++.+=.
T Consensus       123 I~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen  123 ILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             EEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            22339999999999888888887763

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.76  E-value=1.8  Score=33.13  Aligned_cols=67  Identities=16%  Similarity=0.206  Sum_probs=48.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEE-EEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRC-VAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~-la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      ++.|+..|.++.-+.+++++--+ +...  ..|.+ -...+++..+..|+-|+..+.  +|.++...++..++
T Consensus        66 VV~GCy~g~lYfl~~~tGs~~w~-f~~~--~~vk~~a~~d~~~glIycgshd~~~ya--lD~~~~~cVykskc  133 (354)
T KOG4649|consen   66 VVLGCYSGGLYFLCVKTGSQIWN-FVIL--ETVKVRAQCDFDGGLIYCGSHDGNFYA--LDPKTYGCVYKSKC  133 (354)
T ss_pred             EEEEEccCcEEEEEecchhheee-eeeh--hhhccceEEcCCCceEEEecCCCcEEE--ecccccceEEeccc
Confidence            36789999999999999965222 1111  12222 245688999999999999988  99988777766554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.45  E-value=2.1  Score=37.38  Aligned_cols=53  Identities=21%  Similarity=0.186  Sum_probs=36.3

Q ss_pred             eEEEEECCCCc--c-c--e--eEec---CC-CCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092            9 NLVVFNLQNPQ--T-E--F--KRIN---SP-LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus         9 ~v~iwdi~~~~--~-~--~--~~~~---~~-~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~   61 (147)
                      .++|||+..-+  . |  .  +++.   .| ...|+.+|++|.+-+.+|+|-.+|.|.++-=|+
T Consensus        93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi  156 (933)
T KOG2114|consen   93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI  156 (933)
T ss_pred             EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc
Confidence            68999997542  1 1  1  1111   12 235789999999999999999999998843244

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=92.42  E-value=1.7  Score=36.03  Aligned_cols=78  Identities=14%  Similarity=0.066  Sum_probs=50.1

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE---eeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG---SIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g---~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v   82 (147)
                      .--++.|||++..  ++..+-   ..+=+++-|+|.|++++.+   ...|.+-+  ||..+.+.+..+.+-......|..
T Consensus       292 MPAkvtifnlr~~--~v~df~---egpRN~~~fnp~g~ii~lAGFGNL~G~mEv--wDv~n~K~i~~~~a~~tt~~eW~P  364 (566)
T KOG2315|consen  292 MPAKVTIFNLRGK--PVFDFP---EGPRNTAFFNPHGNIILLAGFGNLPGDMEV--WDVPNRKLIAKFKAANTTVFEWSP  364 (566)
T ss_pred             ccceEEEEcCCCC--EeEeCC---CCCccceEECCCCCEEEEeecCCCCCceEE--EeccchhhccccccCCceEEEEcC
Confidence            3457889999863  433332   2355789999999988764   45788999  777776666666543332334555


Q ss_pred             ccceeeee
Q 032092           83 ISFTSILA   90 (147)
Q Consensus        83 ~~~~~~~~   90 (147)
                      +.-.++++
T Consensus       365 dGe~flTA  372 (566)
T KOG2315|consen  365 DGEYFLTA  372 (566)
T ss_pred             CCcEEEEE
Confidence            55555544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.41  E-value=0.12  Score=45.17  Aligned_cols=103  Identities=19%  Similarity=0.284  Sum_probs=58.9

Q ss_pred             CeEEEEECCC--Ccc----ceeEecCCCCcceEEEEEcc---CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            8 RNLVVFNLQN--PQT----EFKRINSPLKYQMRCVAAFP---DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         8 g~v~iwdi~~--~~~----~~~~~~~~~~~~i~~la~sp---dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |...+||+.-  |+.    .++ +..+....+.-|.|.|   +.-++-.+-.+|.|++-.||....   .-|++|...  
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~-~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~---~l~rsHs~~--  226 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVT-PITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR---SLFRSHSQR--  226 (1283)
T ss_pred             hhhheeehHhhccccccceEEe-ecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---HHHHhcCCC--
Confidence            4567888753  321    122 2222222344455544   566777888899999966665432   224556542  


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                         +.....+..|       +..++            ..||||+.||++..||.+++|-+
T Consensus       227 ---~~d~a~~~~g-------~~~l~------------~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  227 ---VTDMAFFAEG-------VLKLA------------SLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ---cccHHHHhhc-------hhhhe------------eeCCCCcEEEEeecCCccceeee
Confidence               1111000000       00111            68999999999999999999975

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.25  E-value=3.2  Score=35.43  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=34.9

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEE--ccCCCEEEEEeeCCeEEE
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAA--FPDQQGFWVGSIEGRVGV   56 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~--spdg~~l~~g~~dg~i~i   56 (147)
                      +...++.|||.+.+..+.+.. -....+|.++.|  .|||+.+++-+-.+.|.+
T Consensus        48 ~~~~~LtIWD~~~~~lE~~~~-f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l  100 (631)
T PF12234_consen   48 SSRSELTIWDTRSGVLEYEES-FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL  100 (631)
T ss_pred             CCCCEEEEEEcCCcEEEEeee-ecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence            334578999999875322211 122457999987  568888887777888888

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.07  E-value=5.8  Score=32.43  Aligned_cols=54  Identities=7%  Similarity=0.075  Sum_probs=33.2

Q ss_pred             eecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092            4 GTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      ...++.|.+||+.+++ .+.++..   .+|+.|.||++|+++|..+.+ .+.|..++..
T Consensus       122 ~~~~~~i~~yDw~~~~-~i~~i~v---~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  122 VKSSDFICFYDWETGK-LIRRIDV---SAVKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             EEETTEEEEE-TTT---EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             EECCCCEEEEEhhHcc-eeeEEec---CCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence            3455689999999985 4555642   248999999999999988765 5666555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.76  E-value=3.7  Score=35.86  Aligned_cols=68  Identities=15%  Similarity=0.227  Sum_probs=43.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCC--c-----ceEEEEEc----------------cCCCEEEEEeeCCeEEEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLK--Y-----QMRCVAAF----------------PDQQGFWVGSIEGRVGVH   57 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~--~-----~i~~la~s----------------pdg~~l~~g~~dg~i~i~   57 (147)
                      |.+++.++.|.-.|.+++++.-+ +.....  .     .-+.+++.                .+++.+..++.|+.+.- 
T Consensus       197 lYv~t~~~~V~ALDa~TGk~lW~-~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA-  274 (764)
T TIGR03074       197 LYLCTPHNKVIALDAATGKEKWK-FDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA-  274 (764)
T ss_pred             EEEECCCCeEEEEECCCCcEEEE-EcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE-
Confidence            35677889999999999875322 211100  0     01223332                13458888999999877 


Q ss_pred             eecCCCCcceeEEE
Q 032092           58 HLDDSQQSKNFTFK   71 (147)
Q Consensus        58 ~~d~~~~~~~~~~~   71 (147)
                       +|.++|+....|.
T Consensus       275 -LDA~TGk~~W~fg  287 (764)
T TIGR03074       275 -LDADTGKLCEDFG  287 (764)
T ss_pred             -EECCCCCEEEEec
Confidence             8999999887764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.67  E-value=3.2  Score=32.22  Aligned_cols=27  Identities=19%  Similarity=0.142  Sum_probs=19.9

Q ss_pred             EEEEEecCCCeEEEeCC-CCcEEEeecC
Q 032092          113 VIVLFVQIHHTFATAGS-DGAFNFWDKD  139 (147)
Q Consensus       113 ~~~~fspdg~~latg~~-Dg~i~iWd~~  139 (147)
                      +.++||||++.|.-+.+ .+.|.-++..
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            45699999977777666 4677777764

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=91.58  E-value=4.4  Score=32.21  Aligned_cols=52  Identities=23%  Similarity=0.237  Sum_probs=33.9

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE-eeCCeEEEEeecCCC
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG-SIEGRVGVHHLDDSQ   63 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g-~~dg~i~i~~~d~~~   63 (147)
                      ++++.+.|-.+.+. ..... ....+ ..++++|+|+.+.+. ..++++.+  +|...
T Consensus       139 ~~~vsvid~~t~~~-~~~~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~v--i~~~~  191 (381)
T COG3391         139 NNTVSVIDAATNKV-TATIP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVSV--IDTSG  191 (381)
T ss_pred             CceEEEEeCCCCeE-EEEEe-cCCCc-ceEEECCCCCeEEEEecCCCeEEE--EeCCC
Confidence            56777777777643 33321 12234 789999999965554 47899998  77543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.53  E-value=0.48  Score=41.14  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=30.9

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCccee
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF   68 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~   68 (147)
                      -+.+++-+|.|+.++.++.||+|++++|-+++...+.
T Consensus        16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~   52 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC   52 (1636)
T ss_pred             eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh
Confidence            3678888999999999999999999988887654443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.42  E-value=0.72  Score=36.11  Aligned_cols=27  Identities=15%  Similarity=0.073  Sum_probs=21.4

Q ss_pred             EEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092          116 LFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus       116 ~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      .|||+|+.+|-.. |+.|.+++..+++.
T Consensus        49 ~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen   49 KWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             EE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             eeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            9999999888874 68899999877644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.21  E-value=0.44  Score=39.50  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=40.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      +|+||.+|.|||||- .+.+. ++...+...+|.-|..+.||+.+++ +.+.++.|  +++.
T Consensus       444 IvvgS~~GdIRLYdr-i~~~A-KTAlPgLG~~I~hVdvtadGKwil~-Tc~tyLlL--i~t~  500 (644)
T KOG2395|consen  444 IVVGSLKGDIRLYDR-IGRRA-KTALPGLGDAIKHVDVTADGKWILA-TCKTYLLL--IDTL  500 (644)
T ss_pred             EEEeecCCcEEeehh-hhhhh-hhcccccCCceeeEEeeccCcEEEE-ecccEEEE--EEEe
Confidence            589999999999997 44322 2222234568999999999988754 55688888  6653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.10  E-value=0.97  Score=36.23  Aligned_cols=58  Identities=16%  Similarity=0.170  Sum_probs=43.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~   63 (147)
                      |..++-+++|+|.|+++... +.... .+ .++.+.+|.-|. .++.+|...|.|.|  +|.+.
T Consensus       209 l~~asl~nkiki~dlet~~~-vssy~-a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv--yD~R~  267 (463)
T KOG1645|consen  209 LGLASLGNKIKIMDLETSCV-VSSYI-AY-NQIWSCCWDLDERHVIYAGLQNGMVLV--YDMRQ  267 (463)
T ss_pred             eeeeccCceEEEEeccccee-eehee-cc-CCceeeeeccCCcceeEEeccCceEEE--EEccC
Confidence            35678899999999998743 33332 23 478999998875 56778889999999  77774

>smart00564 PQQ beta-propeller repeat

Probab=90.96  E-value=0.58  Score=23.04  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=21.2

Q ss_pred             eEEEeCCCCcEEEeecCCceeeecC
Q 032092          123 TFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       123 ~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+..++.||.+...|.++|+.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5667788999999999999988764

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=90.72  E-value=0.82  Score=35.94  Aligned_cols=58  Identities=17%  Similarity=0.273  Sum_probs=39.7

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCC-EE-EEEeeCCeEEEEeecCCCCcceeEEE
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ-GF-WVGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~-~l-~~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      .|=+||+.++++ +.++.  .+.++.+|+++.|.+ .| ++...++.+.+  +|..+|+.+.+..
T Consensus       270 eVWv~D~~t~kr-v~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v--~D~~tGk~~~~~~  329 (342)
T PF06433_consen  270 EVWVYDLKTHKR-VARIP--LEHPIDSIAVSQDDKPLLYALSAGDGTLDV--YDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEETTTTEE-EEEEE--EEEEESEEEEESSSS-EEEEEETTTTEEEE--EETTT--EEEEE-
T ss_pred             EEEEEECCCCeE-EEEEe--CCCccceEEEccCCCcEEEEEcCCCCeEEE--EeCcCCcEEeehh
Confidence            466778998864 45553  345788999999876 33 33455789999  9999998877665

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.09  E-value=1.6  Score=35.64  Aligned_cols=137  Identities=9%  Similarity=-0.034  Sum_probs=75.8

Q ss_pred             EeecCCeEEEEECCC-CccceeEec-----------CC-CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092            3 VGTADRNLVVFNLQN-PQTEFKRIN-----------SP-LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT   69 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~-~~~~~~~~~-----------~~-~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~   69 (147)
                      +....|.|.=|.... .+.|...+.           .+ .+....++.|+|+|..+.+-+.|-+|++  ++..+|+..+.
T Consensus       161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~--F~~KtGklvqe  238 (558)
T KOG0882|consen  161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG--FVFKTGKLVQE  238 (558)
T ss_pred             eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE--EEeccchhhhh
Confidence            334457888898873 222211000           00 1223688999999999999999999999  77777777665


Q ss_pred             EEeccCCceEE--eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           70 FKCHRDGSETC--SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        70 ~~~h~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +..-....+..  +...+.-+.-|++=.  +-+++++. -...+ ..+.|-..|++|+-|..=| |++.++.++.+.+.
T Consensus       239 iDE~~t~~~~q~ks~y~l~~VelgRRma--verelek~-~~~~~-~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri  312 (558)
T KOG0882|consen  239 IDEVLTDAQYQPKSPYGLMHVELGRRMA--VERELEKH-GSTVG-TNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI  312 (558)
T ss_pred             hhccchhhhhccccccccceeehhhhhh--HHhhHhhh-cCccc-ceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence            53211100000  011111111111111  11111110 00000 1348888999999888776 89999998887664

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.85  E-value=0.79  Score=23.63  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=13.7

Q ss_pred             EEEecCCCeEE-EeCCC--CcEEEe
Q 032092          115 VLFVQIHHTFA-TAGSD--GAFNFW  136 (147)
Q Consensus       115 ~~fspdg~~la-tg~~D--g~i~iW  136 (147)
                      .+|||||+.|+ ++..+  |.-.||
T Consensus        14 p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen   14 PAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             EEEecCCCEEEEEecCCCCCCcCEE
Confidence            49999997654 44445  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=89.79  E-value=4.2  Score=30.21  Aligned_cols=55  Identities=29%  Similarity=0.456  Sum_probs=37.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeec
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD   60 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d   60 (147)
                      |++|+++| +.+|++.....+.+ +.  ...+|..|+.-|+-+.+++=+ |+++.+++++
T Consensus        10 L~vGt~~G-l~~~~~~~~~~~~~-i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~   64 (275)
T PF00780_consen   10 LLVGTEDG-LYVYDLSDPSKPTR-IL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLD   64 (275)
T ss_pred             EEEEECCC-EEEEEecCCcccee-Ee--ecceEEEEEEecccCEEEEEc-CCccEEEEch
Confidence            57898888 99999944333322 22  224599999999877766654 4999994443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.44  E-value=3.4  Score=32.05  Aligned_cols=62  Identities=18%  Similarity=0.212  Sum_probs=30.5

Q ss_pred             EEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-----CCeEEEEeecCCC-CcceeEEEecc
Q 032092           11 VVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-----EGRVGVHHLDDSQ-QSKNFTFKCHR   74 (147)
Q Consensus        11 ~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-----dg~i~i~~~d~~~-~~~~~~~~~h~   74 (147)
                      .++|....++++.........----=.|||||.+|.+.-.     -|-|-|  +|.+. ...+.+|..|.
T Consensus        94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGv--Yd~r~~fqrvgE~~t~G  161 (366)
T COG3490          94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGV--YDAREGFQRVGEFSTHG  161 (366)
T ss_pred             EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEE--EecccccceecccccCC
Confidence            4677777655533221111110112368899988766422     355777  45442 22334444443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.36  E-value=6.5  Score=30.47  Aligned_cols=25  Identities=12%  Similarity=0.274  Sum_probs=17.5

Q ss_pred             cceEEEEEccCCCEEEEEeeCCeEEE
Q 032092           31 YQMRCVAAFPDQQGFWVGSIEGRVGV   56 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~~dg~i~i   56 (147)
                      ..|.+|.|+||+...+++ ..|.|+.
T Consensus       187 ~riq~~gf~~~~~lw~~~-~Gg~~~~  211 (302)
T PF14870_consen  187 RRIQSMGFSPDGNLWMLA-RGGQIQF  211 (302)
T ss_dssp             S-EEEEEE-TTS-EEEEE-TTTEEEE
T ss_pred             ceehhceecCCCCEEEEe-CCcEEEE
Confidence            459999999998776654 7788876

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.32  E-value=5.2  Score=27.28  Aligned_cols=61  Identities=13%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             CeEeecCCeEEEEECCCCcc-------ceeEecCCCCcceEEEEEcc-----CCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092            1 MVVGTADRNLVVFNLQNPQT-------EFKRINSPLKYQMRCVAAFP-----DQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-------~~~~~~~~~~~~i~~la~sp-----dg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      |+.++..|+|.|++......       ++..+.  ...+|++|+-.|     +.+.|+.|+... +..  +|..++..
T Consensus        13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t~-lla--YDV~~N~d   85 (136)
T PF14781_consen   13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQTS-LLA--YDVENNSD   85 (136)
T ss_pred             EEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccce-EEE--EEcccCch
Confidence            57788899999999875432       122222  124688887655     356788887654 445  56654433

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.27  E-value=1.6  Score=23.71  Aligned_cols=26  Identities=23%  Similarity=0.189  Sum_probs=21.4

Q ss_pred             EEEecCC---CeEEEeCCCCcEEEeecCC
Q 032092          115 VLFVQIH---HTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus       115 ~~fspdg---~~latg~~Dg~i~iWd~~~  140 (147)
                      +.|||..   .+|+-+---|.|.|+|+++
T Consensus         6 ~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    6 CKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             EEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            5999854   4888887789999999984

It contains a characteristic DLL sequence motif.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=88.71  E-value=3.7  Score=33.31  Aligned_cols=51  Identities=14%  Similarity=0.165  Sum_probs=30.8

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCC
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDS   62 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~   62 (147)
                      .|.++|+...+.+  ++..... .-..=.|+|||+.++- .+..|+-.||-+|..
T Consensus       263 ~iy~~dl~~~~~~--~Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~  314 (425)
T COG0823         263 DIYLMDLDGKNLP--RLTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE  314 (425)
T ss_pred             cEEEEcCCCCcce--ecccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEECCC
Confidence            5677888877532  2332111 1124478999998874 455677666656765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=88.68  E-value=2.5  Score=38.33  Aligned_cols=67  Identities=12%  Similarity=0.120  Sum_probs=46.0

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS  111 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (147)
                      .|.++.|.-+++.+..+..+|.|.+  .|+.+...  ...+....    .|..                           
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iil--vd~et~~~--eivg~vd~----GI~a---------------------------  114 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIIL--VDPETLEL--EIVGNVDN----GISA---------------------------  114 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEE--Ecccccce--eeeeeccC----ceEE---------------------------
Confidence            5888888888999999999999988  77754322  12221111    1222                           


Q ss_pred             eEEEEEecCCCeEEEeCCCCcEEEe
Q 032092          112 HVIVLFVQIHHTFATAGSDGAFNFW  136 (147)
Q Consensus       112 ~~~~~fspdg~~latg~~Dg~i~iW  136 (147)
                         .+||||++++|-...++++.+=
T Consensus       115 ---aswS~Dee~l~liT~~~tll~m  136 (1265)
T KOG1920|consen  115 ---ASWSPDEELLALITGRQTLLFM  136 (1265)
T ss_pred             ---EeecCCCcEEEEEeCCcEEEEE
Confidence               3999999998888777776653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.56  E-value=6.2  Score=34.21  Aligned_cols=60  Identities=12%  Similarity=0.098  Sum_probs=41.4

Q ss_pred             CeEeecCCeEEEEECCCCc-------------------cceeEecCCCCcceEEEEEc--cCCCEEEEEeeCCeEEEEee
Q 032092            1 MVVGTADRNLVVFNLQNPQ-------------------TEFKRINSPLKYQMRCVAAF--PDQQGFWVGSIEGRVGVHHL   59 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~-------------------~~~~~~~~~~~~~i~~la~s--pdg~~l~~g~~dg~i~i~~~   59 (147)
                      |+.|.+||.|.+|-+.+--                   +|+-...  ...++..|+++  ...+.+|+++....|-|+.+
T Consensus       117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf  194 (717)
T PF08728_consen  117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF  194 (717)
T ss_pred             EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence            5788999999999652110                   0111111  12357789998  77899999999999999777


Q ss_pred             cCC
Q 032092           60 DDS   62 (147)
Q Consensus        60 d~~   62 (147)
                      ...
T Consensus       195 ~l~  197 (717)
T PF08728_consen  195 ALV  197 (717)
T ss_pred             ecc
Confidence            664

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.55  E-value=4.3  Score=32.02  Aligned_cols=18  Identities=17%  Similarity=0.159  Sum_probs=13.6

Q ss_pred             ceEEEEEccCCCEEEEEe
Q 032092           32 QMRCVAAFPDQQGFWVGS   49 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~   49 (147)
                      ..+.+++.|||..+++-+
T Consensus       125 ~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604       125 SLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             cccCceECCCCCEEEecc
Confidence            367899999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.39  E-value=9.9  Score=29.82  Aligned_cols=69  Identities=22%  Similarity=0.220  Sum_probs=40.1

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR   74 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~   74 (147)
                      +++.+|.|.-.|..++...-..........+..-.+..+|+ +.+|+.+|.+..  +|.++|+....+....
T Consensus        73 ~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~--ld~~~G~~~W~~~~~~  141 (370)
T COG1520          73 VGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYA--LDASTGTLVWSRNVGG  141 (370)
T ss_pred             EecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEE--EECCCCcEEEEEecCC
Confidence            45678888888888876321111100001122222222665 778888897766  8988888887776443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.90  E-value=1.1  Score=23.18  Aligned_cols=28  Identities=7%  Similarity=0.109  Sum_probs=20.4

Q ss_pred             cCCCeE-EEeCCCCcEEEeecCCceeeec
Q 032092          119 QIHHTF-ATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       119 pdg~~l-atg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      |+++.| ++.-.++.|.++|.++++.+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~   29 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT   29 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            677654 4444588999999988877654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.59  E-value=6  Score=30.73  Aligned_cols=26  Identities=15%  Similarity=0.295  Sum_probs=21.0

Q ss_pred             EEecCCCeEEEeCCC-----CcEEEeecCCc
Q 032092          116 LFVQIHHTFATAGSD-----GAFNFWDKDSK  141 (147)
Q Consensus       116 ~fspdg~~latg~~D-----g~i~iWd~~~~  141 (147)
                      +|||||++|...-+|     |.|-|||.+.+
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            899999998876554     68999998753

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=86.88  E-value=16  Score=32.89  Aligned_cols=104  Identities=16%  Similarity=0.145  Sum_probs=57.2

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCC------CEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQ------QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg------~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      +.++.++.+...++..+. ............|.|+.++|-|      +.+++|.++..+++..+.+. .    .+.+|..
T Consensus       503 vvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd-~----~~~~~~~  576 (1096)
T KOG1897|consen  503 VVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD-L----ILITHEQ  576 (1096)
T ss_pred             EEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC-c----ceeeeec
Confidence            445555666556665543 1111111123568999999842      37899999999888545443 1    1222321


Q ss_pred             CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092           76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                      -...-.+.++                           +-..|--|+.+|.++.+||.+.-+.+
T Consensus       577 l~~~~iPRSI---------------------------l~~~~e~d~~yLlvalgdG~l~~fv~  612 (1096)
T KOG1897|consen  577 LSGEIIPRSI---------------------------LLTTFEGDIHYLLVALGDGALLYFVL  612 (1096)
T ss_pred             cCCCccchhe---------------------------eeEEeeccceEEEEEcCCceEEEEEE
Confidence            1100112232                           01156667788999999998775544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.54  E-value=5.9  Score=31.46  Aligned_cols=45  Identities=20%  Similarity=0.242  Sum_probs=27.6

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCC
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG   52 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg   52 (147)
                      ++...++++|+.+++.....+..   ..-..++|.+|++.|.....+.
T Consensus       147 ~e~~~l~v~Dl~tg~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~  191 (414)
T PF02897_consen  147 SEWYTLRVFDLETGKFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDE  191 (414)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEEE---EESEEEEECTTSSEEEEEECST
T ss_pred             CceEEEEEEECCCCcCcCCcccc---cccceEEEeCCCCEEEEEEeCc
Confidence            34456999999998532112211   1123499999999877665443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=86.41  E-value=4.3  Score=31.31  Aligned_cols=40  Identities=10%  Similarity=0.022  Sum_probs=34.6

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH   73 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h   73 (147)
                      .+++|...++|++|++.-.-.+|.+  +|.++|+.+..+.+.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~--I~~~tG~I~W~lgG~  184 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYK--IDPSTGKIIWRLGGK  184 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEE--EECCCCcEEEEeCCC
Confidence            4899999999999999988888887  999899888888654

>PF01011 PQQ: PQQ enzyme repeat family

Probab=86.30  E-value=1.5  Score=22.64  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=19.5

Q ss_pred             EEEeCCCCcEEEeecCCceeeecC
Q 032092          124 FATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       124 latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      +..++.||.++-.|.++|+.+..|
T Consensus         3 v~~~~~~g~l~AlD~~TG~~~W~~   26 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGKVLWKF   26 (38)
T ss_dssp             EEEETTTSEEEEEETTTTSEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCCEEEee
Confidence            344588999999999999988754

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=86.23  E-value=16  Score=29.43  Aligned_cols=31  Identities=16%  Similarity=-0.031  Sum_probs=26.2

Q ss_pred             cceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092           31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~   61 (147)
                      .++..|++||+|+.+|.-..+|.+.+..-|.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence            4689999999999999999999998844444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.16  E-value=8.9  Score=26.89  Aligned_cols=30  Identities=13%  Similarity=0.180  Sum_probs=23.5

Q ss_pred             ceEEEEEecCC------CeEEEeCCCCcEEEeecCC
Q 032092          111 SHVIVLFVQIH------HTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus       111 ~~~~~~fspdg------~~latg~~Dg~i~iWd~~~  140 (147)
                      +..+++|||-|      -+||.-.+++.+.||--..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            34578999964      2688889999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=85.17  E-value=18  Score=29.10  Aligned_cols=112  Identities=16%  Similarity=0.061  Sum_probs=53.7

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc-eEEeec--cceee-eecCCC-ccee-eeeeeee
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-ETCSVI--SFTSI-LAGDAP-KYSS-FYKVKRL  105 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-~~~~v~--~~~~~-~~~~~~-~~~~-~~~~~~~  105 (147)
                      .|..+.|+++..-|++|...|.|-||-|...+.........+.+.. .-+..+  ...++ .+.+.+ ..+- |.+  ..
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P--~~   80 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLP--LT   80 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEE--EE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCc--hh
Confidence            4889999999889999999999999877654211100000000000 000000  00000 001111 1010 111  11


Q ss_pred             eeee-eceE-EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092          106 HLFV-KSHV-IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       106 ~~~~-~~~~-~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ...+ .|.+ .++.| |=-++|.|..||.+.|-|++....|++
T Consensus        81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee
Confidence            1111 3444 35555 446899999999999999988888764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.45  E-value=12  Score=31.03  Aligned_cols=33  Identities=12%  Similarity=0.000  Sum_probs=28.2

Q ss_pred             CCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092           29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus        29 ~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~   61 (147)
                      .+++|++|.||||.+-+|+--.|.+|.++.+-.
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~   97 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP   97 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCC
Confidence            346899999999999999999999999855533

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=84.43  E-value=20  Score=28.91  Aligned_cols=33  Identities=12%  Similarity=0.070  Sum_probs=26.3

Q ss_pred             eEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092          112 HVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus       112 ~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      ...++.||+|+.+|--..+|.+.+....-.+.+
T Consensus       219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~  251 (410)
T PF04841_consen  219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL  251 (410)
T ss_pred             eEEEEECCCCCEEEEEECCCCEEEEECccccee
Confidence            356899999999999989999998876544443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=84.20  E-value=4.3  Score=30.64  Aligned_cols=32  Identities=9%  Similarity=0.018  Sum_probs=26.1

Q ss_pred             EEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          116 LFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       116 ~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      +.-.+|+++++.-+-|+|.-.|..+|++|.++
T Consensus       218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei  249 (310)
T KOG4499|consen  218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEI  249 (310)
T ss_pred             eEccCCcEEEEEecCcEEEEECCCCCcEEEEE
Confidence            55557888888888889999999999998764

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=82.98  E-value=4.2  Score=29.96  Aligned_cols=45  Identities=7%  Similarity=0.014  Sum_probs=32.0

Q ss_pred             eEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccCCCEEEEE
Q 032092            2 VVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVG   48 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g   48 (147)
                      .++....+|.+||+.+.+. +..++..  -.+|..|++++.|+++++-
T Consensus        32 fva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   32 FVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             EEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccceEEEE
Confidence            3456678899999994332 3334432  2468999999999999984

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=82.93  E-value=18  Score=27.23  Aligned_cols=55  Identities=16%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             CCeEEEEECCCCccc-----eeEec--CC--CCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092            7 DRNLVVFNLQNPQTE-----FKRIN--SP--LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus         7 dg~v~iwdi~~~~~~-----~~~~~--~~--~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~   61 (147)
                      ++.+.++++......     ++.+.  ..  .+..+-.|||.|.++.|.++-......|+.++.
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence            778888888443211     11121  11  223478899999988888877776667744443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.83  E-value=7.9  Score=32.12  Aligned_cols=37  Identities=11%  Similarity=-0.032  Sum_probs=26.2

Q ss_pred             ceEEEEEcc----CCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092           32 QMRCVAAFP----DQQGFWVGSIEGRVGVHHLDDSQQSKNFTF   70 (147)
Q Consensus        32 ~i~~la~sp----dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~   70 (147)
                      .+.++++++    +..++++-+.|+++++  ||+.+++.+.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRi--W~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRI--WSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEE--EETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEE--EECCCCeEEEEe
Confidence            356677777    6778889999999999  777777665544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=82.04  E-value=20  Score=27.48  Aligned_cols=53  Identities=21%  Similarity=0.384  Sum_probs=31.9

Q ss_pred             CeEEEEECCCC-c--cceeEe-cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092            8 RNLVVFNLQNP-Q--TEFKRI-NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus         8 g~v~iwdi~~~-~--~~~~~~-~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~   63 (147)
                      |.|.+|++.+. .  ..++.+ ....+.+|.+|+--  +.+|+++. .++|.+++++..+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTS
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcc
Confidence            89999999983 1  112222 22334678888765  44555544 5899997776643

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=81.85  E-value=12  Score=27.42  Aligned_cols=27  Identities=7%  Similarity=-0.128  Sum_probs=21.1

Q ss_pred             EccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092           38 AFPDQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus        38 ~spdg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      +..+++++++-+.+|.+++  ||+.+++.
T Consensus        18 l~~~~~~Ll~iT~~G~l~v--Wnl~~~k~   44 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYV--WNLKKGKA   44 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEE--EECCCCee
Confidence            4456899999999999999  67765444

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=81.66  E-value=12  Score=28.09  Aligned_cols=37  Identities=16%  Similarity=0.069  Sum_probs=25.5

Q ss_pred             ceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092           32 QMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus        32 ~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      .+..|+|+|+. ..+++....+.|..  ++. +|+.+.++.
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~e--ls~-~G~vlr~i~   60 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYE--LSL-DGKVLRRIP   60 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEE--EET-T--EEEEEE
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEE--EcC-CCCEEEEEe
Confidence            48999999985 46778888888865  776 466665543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=81.49  E-value=3.4  Score=26.02  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=25.8

Q ss_pred             eecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE
Q 032092            4 GTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG   48 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g   48 (147)
                      +..+|.+--||..+++.  +.+.....+ .+-|+++||++.++++
T Consensus        33 ~~~~GRll~ydp~t~~~--~vl~~~L~f-pNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKET--TVLLDGLYF-PNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEE--EEEEEEESS-EEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeE--EEehhCCCc-cCeEEEcCCCCEEEEE
Confidence            34568888899999753  222222323 5899999999977664

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK13616 lipoprotein LpqB; Provisional

Probab=81.12  E-value=7.1  Score=33.14  Aligned_cols=19  Identities=16%  Similarity=0.102  Sum_probs=14.1

Q ss_pred             eEEEEEccCCCEEEEEeeC
Q 032092           33 MRCVAAFPDQQGFWVGSIE   51 (147)
Q Consensus        33 i~~la~spdg~~l~~g~~d   51 (147)
                      ...-.|+|||+.+++....
T Consensus       399 ~t~PsWspDG~~lw~v~dg  417 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDG  417 (591)
T ss_pred             CCCceECCCCCceEEEecC
Confidence            5667899998888776543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=81.05  E-value=38  Score=29.81  Aligned_cols=27  Identities=7%  Similarity=0.138  Sum_probs=23.2

Q ss_pred             CCC---eEEEeCCCCcEEEeecCCceeeec
Q 032092          120 IHH---TFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       120 dg~---~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +|+   .++.++.+|.+.+.|.++++.+..
T Consensus       455 ~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       455 DGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             CCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            663   789999999999999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK10115 protease 2; Provisional

Probab=80.13  E-value=10  Score=32.80  Aligned_cols=33  Identities=12%  Similarity=0.091  Sum_probs=21.7

Q ss_pred             cceEEEEEccCCCEEEEEee-----CCeEEEEeecCCCCc
Q 032092           31 YQMRCVAAFPDQQGFWVGSI-----EGRVGVHHLDDSQQS   65 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~~-----dg~i~i~~~d~~~~~   65 (147)
                      ..+..+.+||||++|+.+..     .-+|++  .|+.++.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v--~d~~tg~  164 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRF--RNLETGN  164 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEE--EECCCCC
Confidence            34778899999998886532     223555  6665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
3mmy_A	368	Structural And Functional Analysis Of The Interacti		6e-27
2i3s_A	349	Bub3 Complex With Bub1 Glebs Motif Length = 349		1e-08
1yfq_A	342	High Resolution S. Cerevisiae Bub3 Mitotic Checkpoi		2e-08
2i3t_A	341	Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length =		2e-08
1u4c_A	349	Structure Of Spindle Checkpoint Protein Bub3 Length		2e-08

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score =  115 bits (289), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)
Query: 2   VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
           VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
Query: 58  HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
           +++    +K NFTFKCHR      S           AP+    Y V            + 
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280
Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
           F  +H T AT GSDG F+FWDKD++ +LK 
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310

>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif Length = 349

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 31/126 (24%)
Query: 27  SPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDS----QQSKNFTFKCHRDGSETCS 81
           S LKYQ+R VA  P +Q+G+   SI+GRV V   DD       SK F F+CHR   +  +
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249
Query: 82  VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141
           +                 Y V  +           F   H    TAGSDG  + W+  ++
Sbjct: 250 LA----------------YPVNSIE----------FSPRHKFLYTAGSDGIISCWNLQTR 283
Query: 142 QRLKVF 147
           +++K F
Sbjct: 284 KKIKNF 289

>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint Protein Length = 342

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 31/126 (24%)
Query: 27  SPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDS----QQSKNFTFKCHRDGSETCS 81
           S LKYQ+R VA  P +Q+G+   SI+GRV V   DD       SK F F+CHR   +  +
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249
Query: 82  VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141
           +                 Y V  +           F   H    TAGSDG  + W+  ++
Sbjct: 250 LA----------------YPVNSIE----------FSPRHKFLYTAGSDGIISCWNLQTR 283
Query: 142 QRLKVF 147
           +++K F
Sbjct: 284 KKIKNF 289

>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length = 341

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 31/126 (24%)
Query: 27  SPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDS----QQSKNFTFKCHRDGSETCS 81
           S LKYQ+R VA  P +Q+G+   SI+GRV V   DD       SK F F+CHR   +  +
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249
Query: 82  VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141
           +                 Y V  +           F   H    TAGSDG  + W+  ++
Sbjct: 250 LA----------------YPVNSIE----------FSPRHKFLYTAGSDGIISCWNLQTR 283
Query: 142 QRLKVF 147
           +++K F
Sbjct: 284 KKIKNF 289

>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3 Length = 349

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 31/126 (24%)
Query: 27  SPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDS----QQSKNFTFKCHRDGSETCS 81
           S LKYQ+R VA  P +Q+G+   SI+GRV V   DD       SK F F+CHR   +  +
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249
Query: 82  VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141
           +                 Y V  +           F   H    TAGSDG  + W+  ++
Sbjct: 250 LA----------------YPVNSIE----------FSPRHKFLYTAGSDGIISCWNLQTR 283
Query: 142 QRLKVF 147
           +++K F
Sbjct: 284 KKIKNF 289

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-29
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	7e-29

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score =  107 bits (270), Expect = 4e-29
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 28/152 (18%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGV 56
            VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV +
Sbjct: 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242

Query: 57  HHLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIV 115
           H+++    +K NFTFKCHR      S                           V     +
Sbjct: 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIY--------------------AVNG---I 279

Query: 116 LFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147
            F  +H T AT GSDG F+FWDKD++ +LK  
Sbjct: 280 AFHPVHGTLATVGSDGRFSFWDKDARTKLKTS 311

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score =  107 bits (268), Expect = 7e-29
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 32/153 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRI-NSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHH 58
           ++VG  +  +  F L   + +   I  S LKYQ+R VA  P +Q+G+   SI+GRV V  
Sbjct: 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

Query: 59  LDDS----QQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVI 114
            DD       SK F F+CHR   +  ++             Y            V S   
Sbjct: 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLA------------YP-----------VNS--- 256

Query: 115 VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147
           + F   H    TAGSDG  + W+  +++++K F
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.89
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.89
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.89
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.89
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.88
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.88
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.87
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.87
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.87
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.87
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.87
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.86
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.86
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.86
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.86
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.86
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.86
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.85
2pm7_B	297	Protein transport protein SEC13, protein transport	99.85
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.85
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.85
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.85
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.85
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.85
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.84
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.84
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.84
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.84
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.84
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.84
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.84
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.84
2pm7_B	297	Protein transport protein SEC13, protein transport	99.84
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.84
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.83
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.83
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.83
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.83
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.82
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.82
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.82
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.82
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.82
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.82
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.82
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.82
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.81
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.81
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.81
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.81
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.81
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.81
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.81
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.81
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.81
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.8
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.8
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.8
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.8
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.8
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.8
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.8
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.79
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.79
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.79
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.79
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.79
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.79
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.79
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.79
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.79
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.79
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.79
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.78
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.78
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.78
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.78
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.78
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.78
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.78
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.78
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.77
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.77
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.77
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.77
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.77
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.76
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.76
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.76
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.76
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.76
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.76
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.76
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.76
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.76
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.75
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.75
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.75
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.75
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.75
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.75
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.74
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.73
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.73
3jro_A	753	Fusion protein of protein transport protein SEC13	99.73
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.73
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.73
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.72
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.71
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.71
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.71
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.71
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.7
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.7
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.69
3jro_A	753	Fusion protein of protein transport protein SEC13	99.69
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.69
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.68
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.67
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.67
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.67
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.66
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.63
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.62
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.59
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.53
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.53
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.46
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.44
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.43
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.39
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.37
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.36
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.35
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.34
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.32
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.3
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.29
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.26
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.26
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.25
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.25
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.24
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.23
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.22
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.22
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.21
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.2
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.18
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.17
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.16
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.14
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.11
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.11
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.06
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.04
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.03
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.01
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.98
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.97
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.97
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.97
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.88
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.86
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.77
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.76
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.68
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.67
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.65
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.63
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.6
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.59
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.58
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.5
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.47
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.47
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.47
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.46
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.46
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.45
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.42
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.42
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.41
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.39
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.38
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.37
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.36
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.35
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.31
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.28
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.27
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.26
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.25
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.19
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.17
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.1
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.02
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.01
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.97
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.93
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.91
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.9
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.85
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.84
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.84
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.83
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.82
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.82
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.81
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.78
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.74
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.72
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.68
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.68
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.67
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.65
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.64
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.64
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.6
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.59
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.59
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.55
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.51
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.44
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.41
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.28
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.26
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.21
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.17
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.96
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.87
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.85
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.84
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.83
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.81
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.5
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.41
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.39
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.27
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.1
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.06
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	95.92
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.86
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.64
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.06
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.06
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.84
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	94.77
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	94.7
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.54
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.52
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	93.58
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.5
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	93.39
4a2l_A	795	BT_4663, two-component system sensor histidine kin	93.23
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	92.35
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	92.07
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.65
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	90.93
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	90.72
3kya_A	496	Putative phosphatase; structural genomics, joint c	90.7
3kya_A	496	Putative phosphatase; structural genomics, joint c	89.85
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.8
3v9f_A	781	Two-component system sensor histidine kinase/RESP	89.25
4a2l_A	795	BT_4663, two-component system sensor histidine kin	88.9
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	88.48
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	88.28
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	87.85
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	87.77
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	87.74
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.67
3v9f_A	781	Two-component system sensor histidine kinase/RESP	86.03
3v65_B	386	Low-density lipoprotein receptor-related protein;	85.47
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.94
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	84.92
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	84.63
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	82.15
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	81.77
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	81.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	81.29
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	81.09
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	80.65
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	80.22

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.89  E-value=1.7e-22  Score=155.23  Aligned_cols=144  Identities=12%  Similarity=0.090  Sum_probs=103.1

Q ss_pred             CeEeecCCeEEEEECCCCcccee--EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFK--RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~--~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |++|+.||+|+|||+.+++....  .....|...|++|+|+|||++|++|+.||+|+|  ||+++++.+.++.+|.....
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i--wd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV--WDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTTEEEEEECCCSSCEE
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE--EECCCCcEEEEEcCcCCceE
Confidence            57899999999999998864321  112246678999999999999999999999999  78888899999999987643


Q ss_pred             E--EeeccceeeeecCCC-cceeeeeee--eeeee----eec--eEEEEEecCC-CeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 T--CSVISFTSILAGDAP-KYSSFYKVK--RLHLF----VKS--HVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~--~~v~~~~~~~~~~~~-~~~~~~~~~--~~~~~----~~~--~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .  +......++++++.| .++++. +.  +....    ..+  ..+++|+|++ ++||+|+.||+|+|||+++++++++
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~  252 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWD-TRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS  252 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEE-TTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred             EEEecCCCCCceeeecccccccccc-ccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence            2  333333345555544 555543 21  11111    122  3578999965 7899999999999999999988765


Q ss_pred             C
Q 032092          147 F  147 (147)
Q Consensus       147 ~  147 (147)
                      |
T Consensus       253 ~  253 (344)
T 4gqb_B          253 S  253 (344)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.89  E-value=5.9e-22  Score=150.29  Aligned_cols=142  Identities=18%  Similarity=0.240  Sum_probs=107.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~   78 (147)
                      |++|+.||.|++||+++++.. ..+. .+...+.+++|+|+|++|++|+.||.|++  ||.++++.+.++.+|....  .
T Consensus       137 l~~g~~dg~v~i~~~~~~~~~-~~~~-~~~~~v~~~~~spdg~~lasg~~dg~i~i--wd~~~~~~~~~~~~h~~~v~~l  212 (321)
T 3ow8_A          137 LATGTHVGKVNIFGVESGKKE-YSLD-TRGKFILSIAYSPDGKYLASGAIDGIINI--FDIATGKLLHTLEGHAMPIRSL  212 (321)
T ss_dssp             EEEECTTSEEEEEETTTCSEE-EEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTTEEEEEECCCSSCCCEE
T ss_pred             EEEEcCCCcEEEEEcCCCcee-EEec-CCCceEEEEEECCCCCEEEEEcCCCeEEE--EECCCCcEEEEEcccCCceeEE
Confidence            578999999999999998643 3333 23457999999999999999999999999  7888888888898887643  3


Q ss_pred             EEeeccceeeeecCCC-cceeeee-eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           79 TCSVISFTSILAGDAP-KYSSFYK-VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+..+.. .+++|+++ .++++.. .......+.+|    ..++|+|++++|++|+.|++|+|||+++++++++|
T Consensus       213 ~~spd~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          213 TFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             EECTTSC-EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEcCCCC-EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence            3444443 34444445 5555442 12233455565    57999999999999999999999999999888764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.89  E-value=7.1e-22  Score=148.27  Aligned_cols=143  Identities=17%  Similarity=0.271  Sum_probs=101.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc-CCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR-DGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~-~~~~   78 (147)
                      |++|+.||+|++||++++......+ ..|...|.+++|+| ++..|++|+.||+|++  ||.+++.....+..+. ....
T Consensus       112 l~sgs~D~~v~lWd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i--wd~~~~~~~~~~~~~~~~~v~  188 (304)
T 2ynn_A          112 VLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKV--WSLGQSTPNFTLTTGQERGVN  188 (304)
T ss_dssp             EEEEETTSCEEEEEGGGTTEEEEEE-CCCCSCEEEEEECTTCTTEEEEEETTSEEEE--EETTCSSCSEEEECCCTTCEE
T ss_pred             EEEECCCCeEEEEECCCCcchhhhh-cccCCcEEEEEECCCCCCEEEEEeCCCeEEE--EECCCCCccceeccCCcCcEE
Confidence            5899999999999999875433333 34667899999999 6789999999999999  6766666666665432 2211


Q ss_pred             --EEeec-cceeeeecCCC-cceeeee-eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 --TCSVI-SFTSILAGDAP-KYSSFYK-VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 --~~~v~-~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                        .+... .-..+++|+++ .+++|.. ..+....+.+|    ..++|+|++++|+||+.||+|+|||+++++++++
T Consensus       189 ~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~  265 (304)
T 2ynn_A          189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT  265 (304)
T ss_dssp             EEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence              12111 11234444444 5555442 12344566666    4689999999999999999999999999888765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.89  E-value=1.2e-21  Score=148.06  Aligned_cols=140  Identities=19%  Similarity=0.217  Sum_probs=102.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.|++|+|||+++++. ...+. .|..+|.+++|+|++++|++|+.||+|++  ||.+ +..+.++.+|.......
T Consensus        80 l~s~s~D~~v~~wd~~~~~~-~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~v--wd~~-~~~~~~~~~h~~~v~~~  154 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGET-YQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKV--WTIK-GQCLATLLGHNDWVSQV  154 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEE-EEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEE--EETT-SCEEEEECCCSSCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCCe-eEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEE--EECC-CCeEEEEeccCCcEEEE
Confidence            58999999999999999863 44443 46678999999999999999999999999  5654 45667777887543221


Q ss_pred             eec--------cceeeeecCCCcceeeeeee--eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVI--------SFTSILAGDAPKYSSFYKVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ...        ...+++++.|..++.+. +.  +....+.+|    ..++|+|+|++|++|+.||.|+|||+.+++++++
T Consensus       155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~  233 (319)
T 3frx_A          155 RVVPNEKADDDSVTIISAGNDKMVKAWN-LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT  233 (319)
T ss_dssp             EECCC------CCEEEEEETTSCEEEEE-TTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             EEccCCCCCCCccEEEEEeCCCEEEEEE-CCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            111        11234444444554443 32  223345555    5799999999999999999999999999888765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.88  E-value=1.5e-21  Score=146.53  Aligned_cols=139  Identities=16%  Similarity=0.168  Sum_probs=103.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      |++|+.||+|+|||+.+++. ...+. .+..+|++++|+|++++|++|+.|++|++  ||..+++.+.++.+|.....  
T Consensus        28 l~s~~~dg~v~lWd~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~v--wd~~~~~~~~~~~~h~~~v~~~  103 (304)
T 2ynn_A           28 VLTTLYSGRVELWNYETQVE-VRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRV--FNYNTGEKVVDFEAHPDYIRSI  103 (304)
T ss_dssp             EEEEETTSEEEEEETTTTEE-EEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEE--EETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEcCCCcEEEEECCCCce-eEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEE--EECCCCcEEEEEeCCCCcEEEE
Confidence            58999999999999999853 44444 34568999999999999999999999999  77778888899999987543  


Q ss_pred             EEeeccceeeeecCCCcceeeeeee--eeeeeeece----EEEEEec-CCCeEEEeCCCCcEEEeecCCcee
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVK--RLHLFVKSH----VIVLFVQ-IHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~fsp-dg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      .+..+...+++++.|..+++|....  .....+.+|    ..++|+| ++++||+|+.|++|++||+++++.
T Consensus       104 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~  175 (304)
T 2ynn_A          104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP  175 (304)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC
T ss_pred             EEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence            3333333334444444555544211  233455666    4789999 579999999999999999976543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.88  E-value=1.2e-21  Score=151.31  Aligned_cols=140  Identities=16%  Similarity=0.226  Sum_probs=100.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC----
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG----   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~----   76 (147)
                      |++|+.||+|++||++....+...+. .|..+|++++|+|++++|++|+.||+|+|  ||.++++.+..+..+...    
T Consensus       221 l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~l--wd~~~~~~~~~~~~~~~~~~~~  297 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRL--FDMRTGHQLQVYNREPDRNDNE  297 (380)
T ss_dssp             EEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEE--EETTTTEEEEEECCCCSSSCCS
T ss_pred             EEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEE--EECCCCcEEEEecccccccccc
Confidence            57899999999999986544444443 46678999999999999999999999999  788878777777554321    


Q ss_pred             -----ceEEeeccceeeeecCCCcceeeeee-eeeeeee----ece----EEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           77 -----SETCSVISFTSILAGDAPKYSSFYKV-KRLHLFV----KSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        77 -----~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                           ..++..+.-.+++++.+..+.+|... .+....+    .+|    ..++|+|||++|+||+.||+|+||++..++
T Consensus       298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             cCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence                 12344444434444444455555421 1111222    455    468999999999999999999999998765


Q ss_pred             e
Q 032092          143 R  143 (147)
Q Consensus       143 ~  143 (147)
                      .
T Consensus       378 ~  378 (380)
T 3iz6_a          378 K  378 (380)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.87  E-value=2.3e-21  Score=148.90  Aligned_cols=140  Identities=14%  Similarity=0.167  Sum_probs=98.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC-CCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |++|+.||+|+|||+++++. ...+.. .+...+.+++|+|+ +++|++|+.||+|+|  ||.++++.+.++.+|.....
T Consensus       185 l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~--wd~~~~~~~~~~~~h~~~v~  261 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL--VDTKSTSCVLSSAVHSQCVT  261 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE--EESCC--CCEEEECCSSCEE
T ss_pred             eeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccCCcEEE--EECCCCcEEEEEcCCCCCEE
Confidence            47899999999999999864 333322 23346899999996 568899999999999  78888899999999987543


Q ss_pred             --EEeeccceeeeecCCC-cceeeeeeeeeeeeeece----EEEEEecCCC-eEEEeCCCCcEEEeecCCcee
Q 032092           79 --TCSVISFTSILAGDAP-KYSSFYKVKRLHLFVKSH----VIVLFVQIHH-TFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        79 --~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~fspdg~-~latg~~Dg~i~iWd~~~~~~  143 (147)
                        ++..+...++++|++| .+++|..-......+.+|    .+++|+|+++ +|+|||.|++|++|++.+...
T Consensus       262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence              3444443445555555 455554222223445666    5799999985 688999999999999987543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.87  E-value=5.1e-21  Score=145.09  Aligned_cols=144  Identities=12%  Similarity=0.070  Sum_probs=104.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~   78 (147)
                      |++|+.|++|+|||++.++.........|...|.+++|+|++..+++|+.|++|++  ||..+++.+..+..|....  .
T Consensus        51 l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l--Wd~~~~~~~~~~~~~~~~~~~~  128 (321)
T 3ow8_A           51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL--WDLENGKQIKSIDAGPVDAWTL  128 (321)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE--EETTTTEEEEEEECCTTCCCCE
T ss_pred             EEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE--EECCCCCEEEEEeCCCccEEEE
Confidence            58999999999999987643222222356678999999999999999999999999  7777788888887776532  3


Q ss_pred             EEeeccceeeeecCCCcceeeeee-eeeeeeeec----eEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKV-KRLHLFVKS----HVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+..+...+++++.+..+.++... .+....+..    ...++|+|+|++||+|+.||.|++||+++++++++
T Consensus       129 ~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~  201 (321)
T 3ow8_A          129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT  201 (321)
T ss_dssp             EECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            444444433444444444444311 122223333    35789999999999999999999999999988765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.87  E-value=7.3e-21  Score=144.37  Aligned_cols=141  Identities=14%  Similarity=0.199  Sum_probs=95.1

Q ss_pred             CeEeecCCeEEEEECCCCc-cceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC-----CCcceeEEEec
Q 032092            1 MVVGTADRNLVVFNLQNPQ-TEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS-----QQSKNFTFKCH   73 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~-~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~-----~~~~~~~~~~h   73 (147)
                      ||+|+.|++|+|||++.++ .....+.. .|..+|++++|+|++++|++|+.|++|+||+.+..     +.+....+.+|
T Consensus        27 las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h  106 (330)
T 2hes_X           27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH  106 (330)
T ss_dssp             EEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC--
T ss_pred             EEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC
Confidence            5899999999999998753 22233422 36678999999999999999999999999544321     23345667788


Q ss_pred             cCCce--EEeeccceeeeecCCCcceeeeeee-----eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           74 RDGSE--TCSVISFTSILAGDAPKYSSFYKVK-----RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        74 ~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      .....  .+..+...++++|.|..++++..-.     +....+.+|    ..++|+|++++|+||+.|++|++||..++
T Consensus       107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            76533  3333443334445555555544211     233455666    57999999999999999999999998765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.87  E-value=6.4e-21  Score=145.06  Aligned_cols=142  Identities=15%  Similarity=0.129  Sum_probs=105.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      |++|+.|++|++||+++++. ...+. .|..+|.+++|+|++++|++|+.||+|++  ||.++++...++.+|.....  
T Consensus       157 l~s~s~d~~i~~wd~~~~~~-~~~~~-~h~~~v~~~~~~~~~~~l~sg~~d~~v~~--wd~~~~~~~~~~~~h~~~v~~v  232 (340)
T 1got_B          157 IVTSSGDTTCALWDIETGQQ-TTTFT-GHTGDVMSLSLAPDTRLFVSGACDASAKL--WDVREGMCRQTFTGHESDINAI  232 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEE-EEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTCSEEEEECCCSSCEEEE
T ss_pred             EEEEECCCcEEEEECCCCcE-EEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEE--EECCCCeeEEEEcCCcCCEEEE
Confidence            57899999999999999853 34443 45668999999999999999999999999  78888888888988876532  


Q ss_pred             EEeeccceeeeecCCCcceeeeee-eeeeeee------eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKV-KRLHLFV------KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ++..+.-.+++++.|..+++|..- .+....+      .+..+++|+|+|++|++|+.||.|++||+.+++.+.+
T Consensus       233 ~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~  307 (340)
T 1got_B          233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeE
Confidence            343444334444555555554411 1111111      2346799999999999999999999999988877654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.87  E-value=3.7e-21  Score=150.14  Aligned_cols=142  Identities=11%  Similarity=0.011  Sum_probs=106.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      |++|+.||+|+|||+.+++. ...+. .|..+|.+++|+|++++|++|+.||+|+|  ||..+++.+.++.+|.....  
T Consensus       123 l~s~s~Dg~i~vwd~~~~~~-~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~i--wd~~~~~~~~~~~~h~~~V~~v  198 (410)
T 1vyh_C          123 MVSASEDATIKVWDYETGDF-ERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKL--WDFQGFECIRTMHGHDHNVSSV  198 (410)
T ss_dssp             EEEEESSSCEEEEETTTCCC-CEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCE--EETTSSCEEECCCCCSSCEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcE-EEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEE--EeCCCCceeEEEcCCCCCEEEE
Confidence            58999999999999999864 34443 46668999999999999999999999999  67777777788888876533  


Q ss_pred             EEeeccceeeeecCCCcceeeee-eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYK-VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+..+...++++|.|..+++|.. .......+.+|    ..++|+|+|++|++|+.|++|++||+.++++..+
T Consensus       199 ~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~  271 (410)
T 1vyh_C          199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE  271 (410)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE
Confidence            23333333444455444544442 12234455666    4689999999999999999999999998876543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.86  E-value=4.9e-21  Score=143.42  Aligned_cols=138  Identities=16%  Similarity=0.091  Sum_probs=95.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-ceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~~   79 (147)
                      +++|+.|+.|++||+++++. ...+. .+..+|++|+|+|++++|++|+.||+|++  ||.++.+.+..+..+..- ...
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~-~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~i--wd~~~~~~~~~~~~~~~v~~~~  263 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKL-KTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAML--WDLNEGKHLYTLDGGDIINALC  263 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEE-EEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEE--EETTTTEEEEEEECSSCEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCce-eeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEE--EEeccCceeeeecCCceEEeee
Confidence            36889999999999999853 33343 46678999999999999999999999999  777777777777755431 122


Q ss_pred             EeeccceeeeecCCCcceeeee--------eeee--eeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           80 CSVISFTSILAGDAPKYSSFYK--------VKRL--HLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      +..+. .+++++.+..+.++..        +...  .....+|    ++++|+|||++|+||+.||.|+|||+++|.+
T Consensus       264 ~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          264 FSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             ECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred             cCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence            32232 3455565555544431        1111  1122333    5799999999999999999999999998863

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.86  E-value=2e-20  Score=138.84  Aligned_cols=137  Identities=14%  Similarity=0.161  Sum_probs=100.9

Q ss_pred             EeecCCeEEEEECCCCccceeEec-CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      +.+.|++|+|||+.+++. .+.+. ..+...|++++|+|++++|++|+.||+|+|  ||.++++.+.++.+|........
T Consensus        40 Avg~D~tV~iWd~~tg~~-~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~i--w~~~~~~~~~~~~~h~~~~~~~~  116 (318)
T 4ggc_A           40 AVALDNSVYLWSASSGDI-LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL--WDVQQQKRLRNMTSHSARVGSLS  116 (318)
T ss_dssp             EEEETTEEEEEETTTCCE-EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEE--EETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEeCCEEEEEECCCCCE-EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEE--eecCCceeEEEecCccceEEEee
Confidence            345699999999999864 34443 235557999999999999999999999999  78888888899999987654454


Q ss_pred             eccceeeeecCCC-cceeeeee--eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           82 VISFTSILAGDAP-KYSSFYKV--KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        82 v~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      .... .+++|+.+ .+..+...  ......+.+|    ..++|+|++++|++|+.||.|++||+++++.
T Consensus       117 ~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          117 WNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             EETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred             cCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence            4454 34444444 33333321  1223344555    4689999999999999999999999987653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.86  E-value=1e-20  Score=144.30  Aligned_cols=142  Identities=11%  Similarity=0.079  Sum_probs=101.0

Q ss_pred             CeEeecCCeEEEEECCCCcccee-EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFK-RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE-   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~-~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~-   78 (147)
                      ||+|+.|++|+|||+.+++.... .....|..+|++++|+|+|++|++|+.|++++||+.+..+.+...++.+|..... 
T Consensus        31 las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~  110 (345)
T 3fm0_A           31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKS  110 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEE
T ss_pred             EEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceE
Confidence            68999999999999988742211 2234566789999999999999999999999996554433345677888876533 


Q ss_pred             -EEeeccceeeeecCCCcceeeeee----eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           79 -TCSVISFTSILAGDAPKYSSFYKV----KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        79 -~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                       .+..+.-.+++++.|..++++..-    ......+.+|    ..++|+|++++||+|+.|++|++||.++++
T Consensus       111 v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~  183 (345)
T 3fm0_A          111 VAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD  183 (345)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE
T ss_pred             EEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC
Confidence             343444334444555555554421    1223345555    478999999999999999999999988764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.86  E-value=2.2e-20  Score=139.69  Aligned_cols=142  Identities=18%  Similarity=0.108  Sum_probs=106.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      |++|+.||.|++||+.+++. ...+. .+..+|.+++|+|++++|++|+.||.|++  ||.++++.+..+.+|.....  
T Consensus        38 l~s~~~dg~i~iw~~~~~~~-~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~v--wd~~~~~~~~~~~~~~~~v~~~  113 (312)
T 4ery_A           38 LASSSADKLIKIWGAYDGKF-EKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKI--WDVSSGKCLKTLKGHSNYVFCC  113 (312)
T ss_dssp             EEEEETTSCEEEEETTTCCE-EEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEeeCCCeEEEEeCCCccc-chhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEE--EECCCCcEEEEEcCCCCCEEEE
Confidence            58899999999999998753 33343 45668999999999999999999999999  77777888888988876533  


Q ss_pred             EEeeccceeeeecCCCcceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+....-.+++++.+..++++... .+....+.+|    ..++|+|++++|++|+.||.|++||+++++.+.+
T Consensus       114 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~  186 (312)
T 4ery_A          114 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT  186 (312)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE
Confidence            233333333444555455554421 2233445444    5689999999999999999999999998877653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.86  E-value=1.6e-20  Score=146.50  Aligned_cols=141  Identities=18%  Similarity=0.174  Sum_probs=104.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET-   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~-   79 (147)
                      |++|+.|++|++||+++++. ...+. .+...|++++++|++++|++|+.||+|++  ||.++++...++.+|.....+ 
T Consensus       207 l~s~s~D~~i~~wd~~~~~~-~~~~~-~h~~~v~~~~~~~~g~~l~s~s~D~~v~v--wd~~~~~~~~~~~~h~~~v~~~  282 (410)
T 1vyh_C          207 IVSASRDKTIKMWEVQTGYC-VKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRV--WVVATKECKAELREHRHVVECI  282 (410)
T ss_dssp             EEEEETTSEEEEEETTTCCE-EEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTCCEEEEECCCSSCEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcE-EEEEe-CCCccEEEEEECCCCCEEEEEcCCCeEEE--EECCCCceeeEecCCCceEEEE
Confidence            57899999999999999864 44454 35567999999999999999999999999  777777777888888764322 


Q ss_pred             -Eeecc-------------------ceeeeecCCC-cceeeeeee--eeeeeeece----EEEEEecCCCeEEEeCCCCc
Q 032092           80 -CSVIS-------------------FTSILAGDAP-KYSSFYKVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGA  132 (147)
Q Consensus        80 -~~v~~-------------------~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~  132 (147)
                       +....                   -..+++|+.+ .+++|. +.  .....+.+|    ..++|+|+|++|++|+.||+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd-~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~  361 (410)
T 1vyh_C          283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD-VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT  361 (410)
T ss_dssp             EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE-TTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred             EEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE-CCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence             22210                   1234455555 444443 32  334455666    47999999999999999999


Q ss_pred             EEEeecCCceeeec
Q 032092          133 FNFWDKDSKQRLKV  146 (147)
Q Consensus       133 i~iWd~~~~~~~~~  146 (147)
                      |++||+++++++++
T Consensus       362 i~vwd~~~~~~~~~  375 (410)
T 1vyh_C          362 LRVWDYKNKRCMKT  375 (410)
T ss_dssp             EEEECCTTSCCCEE
T ss_pred             EEEEECCCCceEEE
Confidence            99999998887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.86  E-value=2.1e-20  Score=142.23  Aligned_cols=143  Identities=9%  Similarity=0.102  Sum_probs=102.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC--cceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ--SKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~--~~~~~~~~h~~~~~   78 (147)
                      |++|+.||+|+|||+.+++. ...+. .+...|.+++|+|++++|++|+.|+.|++|+++...+  +....+.+|.....
T Consensus        70 l~s~s~Dg~v~iWd~~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~  147 (340)
T 1got_B           70 LLSASQDGKLIIWDSYTTNK-VHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS  147 (340)
T ss_dssp             EEEEETTTEEEEEETTTCCE-EEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEE
T ss_pred             EEEEeCCCcEEEEECCCCCc-ceEee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEE
Confidence            58999999999999998864 34443 3456799999999999999999999999954433222  23456677876432


Q ss_pred             E--EeeccceeeeecCCCcceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 T--CSVISFTSILAGDAPKYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~--~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +  +.... .+++++.|..+++|... .+....+.+|    ..++|+|++++|++|+.||.|++||+++++++.+
T Consensus       148 ~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~  221 (340)
T 1got_B          148 CCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT  221 (340)
T ss_dssp             EEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred             EEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE
Confidence            2  22222 24455555555555421 2334455555    5799999999999999999999999999887654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.85  E-value=9.7e-21  Score=145.47  Aligned_cols=138  Identities=17%  Similarity=0.152  Sum_probs=98.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec-CCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      +++++.||+|++||+++++.. ..+. ..+...+.+++|+|+ +++|++|+.|+.|++  ||+++++...++.+|.....
T Consensus       197 ~~s~~~dg~v~~wd~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~--wd~~~~~~~~~~~~~~~~v~  273 (357)
T 4g56_B          197 FLSCGEDGRILLWDTRKPKPA-TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL--VNIKNPDSAQTSAVHSQNIT  273 (357)
T ss_dssp             EEEEETTSCEEECCTTSSSCB-CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE--EESSCGGGCEEECCCSSCEE
T ss_pred             eeeeccCCceEEEECCCCcee-eeeeeccccccccchhhhhcccceEEEeecccceeE--EECCCCcEeEEEeccceeEE
Confidence            478899999999999998642 2222 234456999999998 568899999999999  78888888889988876533


Q ss_pred             --EEeeccceeeeecCCC-cceeeeeeeeeeeeeece----EEEEEec-CCCeEEEeCCCCcEEEeecCCc
Q 032092           79 --TCSVISFTSILAGDAP-KYSSFYKVKRLHLFVKSH----VIVLFVQ-IHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        79 --~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~fsp-dg~~latg~~Dg~i~iWd~~~~  141 (147)
                        ++....-.++++|++| .+++|..-........+|    ..++|+| |+++|||||.||+|++||+.+.
T Consensus       274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence              3333333345555555 455544211222233355    5799999 7899999999999999999754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.85  E-value=5.1e-20  Score=137.71  Aligned_cols=138  Identities=14%  Similarity=0.181  Sum_probs=94.3

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCCc--ceeEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQS--KNFTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~~--~~~~~~~h~~   75 (147)
                      |++|+.||+|+|||+++++. ....+ ..+..+|++++|+|+  |++|++|+.||+|++|  |.+++.  ....+.+|..
T Consensus        70 l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~w--d~~~~~~~~~~~~~~h~~  146 (297)
T 2pm7_B           70 LASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV--EFKENGTTSPIIIDAHAI  146 (297)
T ss_dssp             EEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE--EBCSSSCBCCEEEECCSS
T ss_pred             EEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEE--EecCCCceeeeeeecccC
Confidence            58999999999999998642 22223 235567999999998  8999999999999995  544332  2456677765


Q ss_pred             Cce--EEeecc------------ceeeee-cCCCcceeeeeee-----eeeeeeece----EEEEEecCC---CeEEEeC
Q 032092           76 GSE--TCSVIS------------FTSILA-GDAPKYSSFYKVK-----RLHLFVKSH----VIVLFVQIH---HTFATAG  128 (147)
Q Consensus        76 ~~~--~~~v~~------------~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~----~~~~fspdg---~~latg~  128 (147)
                      ...  .+.+..            -..+++ |.|..++++..-.     .....+.+|    ..++|+|++   ++||||+
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence            432  222221            123444 4444555544211     123456676    479999995   8999999


Q ss_pred             CCCcEEEeecCCc
Q 032092          129 SDGAFNFWDKDSK  141 (147)
Q Consensus       129 ~Dg~i~iWd~~~~  141 (147)
                      .|++|+|||+++.
T Consensus       227 ~D~~v~iWd~~~~  239 (297)
T 2pm7_B          227 QDRTCIIWTQDNE  239 (297)
T ss_dssp             TTSCEEEEEESST
T ss_pred             CCCcEEEEEeCCC
Confidence            9999999998763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.85  E-value=1.3e-20  Score=145.32  Aligned_cols=133  Identities=12%  Similarity=0.014  Sum_probs=89.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCC--CcceEEEEEccCCCEE------------EEEeeCCeEEEEeecCCCCcc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPL--KYQMRCVAAFPDQQGF------------WVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~--~~~i~~la~spdg~~l------------~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      ||+|+.|++|+|||+++++. .+++..++  ...+.+++|+|||+++            ++|+.|++|++  ||+.+++.
T Consensus       196 LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl--Wd~~tgk~  272 (356)
T 2w18_A          196 LLGTTIMNNIVIWNLKTGQL-LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV--INPKTTLS  272 (356)
T ss_dssp             EEEEETTSEEEEEETTTCCE-EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE--EETTTTEE
T ss_pred             EEEecCCCcEEEEECCCCcE-EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE--EECCCCEE
Confidence            57899999999999999964 45564322  2357888999999886            66889999999  77777776


Q ss_pred             eeEEE-----eccCCceEEeeccceeeeecCCC-cceeeeeee--eeeeeeece----E-EEEEecCCCeEEEeCCCCcE
Q 032092           67 NFTFK-----CHRDGSETCSVISFTSILAGDAP-KYSSFYKVK--RLHLFVKSH----V-IVLFVQIHHTFATAGSDGAF  133 (147)
Q Consensus        67 ~~~~~-----~h~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~----~-~~~fspdg~~latg~~Dg~i  133 (147)
                      +..+.     +|............ ++++|+.| .++++. +.  +....+.+|    . .++|||||++||||+.|++|
T Consensus       273 l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~DgTIkIWD-l~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI  350 (356)
T 2w18_A          273 VGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSGTIAIWD-LLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI  350 (356)
T ss_dssp             EEEEEECCCTTCCCCEEEEEEETT-EEEEEETTSCEEEEE-TTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred             EEEEEeeccCCCcceeEccccCCC-EEEEEcCCCcEEEEE-CCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence            65542     45432111111111 34555555 455444 33  334456666    3 47999999999999999999


Q ss_pred             EEeec
Q 032092          134 NFWDK  138 (147)
Q Consensus       134 ~iWd~  138 (147)
                      +|||.
T Consensus       351 klWd~  355 (356)
T 2w18_A          351 FVYHY  355 (356)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            99995

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.85  E-value=3.3e-20  Score=141.12  Aligned_cols=135  Identities=19%  Similarity=0.193  Sum_probs=92.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE---eccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK---CHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~---~h~~~~   77 (147)
                      |++|+.|++|+|||+++++. ...+. .|..+|.+++|+|++++|++|+.||+|++  ||... .....+.   +|....
T Consensus        91 l~s~s~D~~v~lwd~~~~~~-~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~--wd~~~-~~~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTT-YKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKL--WNILG-ECKFSSAEKENHSDWV  165 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCE-EEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEE--EESSS-CEEEECCTTTSCSSCE
T ss_pred             EEEEcCCCcEEEEECCCCcE-EEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEE--EeccC-CceeeeecccCCCcee
Confidence            57999999999999999863 44443 45678999999999999999999999999  55542 2222222   343321


Q ss_pred             eE--Eeecc----------ceeeeecCCCcceeeeeeeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           78 ET--CSVIS----------FTSILAGDAPKYSSFYKVKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        78 ~~--~~v~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .+  +....          ..+++++.|..++++..-.+....+.+|    ..++|+|+|++||+|+.||.|++||+.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            11  11111          1233445555555555222333445555    5799999999999999999999999843

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.85  E-value=7.2e-20  Score=140.35  Aligned_cols=142  Identities=13%  Similarity=0.147  Sum_probs=104.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc--CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP--DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp--dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |++|+.||+|++||+++++. ...+. .|..+|.+++++|  +|++|++|+.||+|++  ||.++++...++.+|.....
T Consensus       169 l~t~s~D~~v~lwd~~~~~~-~~~~~-~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~--wd~~~~~~~~~~~~h~~~v~  244 (354)
T 2pbi_B          169 ILTASGDGTCALWDVESGQL-LQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFETHESDVN  244 (354)
T ss_dssp             EEEEETTSEEEEEETTTCCE-EEEEE-CCSSCEEEEEECCCSSCCEEEEEETTSCEEE--EETTTCCEEEEECCCSSCEE
T ss_pred             EEEEeCCCcEEEEeCCCCeE-EEEEc-CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEE--EECCCCcEEEEecCCCCCeE
Confidence            57899999999999999863 44454 3556799999988  4789999999999999  78888888888888876532


Q ss_pred             --EEeeccceeeeecCCCcceeeeee-eeeeeee------eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 --TCSVISFTSILAGDAPKYSSFYKV-KRLHLFV------KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 --~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                        .+..+.-.++++|.|..+++|..- .+....+      .+...++|+|+|++|++|+.|+.|++||+.+++.+.+
T Consensus       245 ~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~  321 (354)
T 2pbi_B          245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI  321 (354)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE
Confidence              333334334455555556555421 1111122      2345789999999999999999999999988876653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.85  E-value=1e-19  Score=139.49  Aligned_cols=115  Identities=11%  Similarity=0.114  Sum_probs=83.1

Q ss_pred             CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEee--cc-ceeeeecCCC-cceeeee-ee
Q 032092           29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV--IS-FTSILAGDAP-KYSSFYK-VK  103 (147)
Q Consensus        29 ~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v--~~-~~~~~~~~~~-~~~~~~~-~~  103 (147)
                      |...|.+++|+|+++.|++|+.||+|++  ||+++++.+.++.+|.....+..+  .. -..+++|+.+ .+.+|.. ..
T Consensus       153 h~~~v~~~~~~~~~~~l~t~s~D~~v~l--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~  230 (354)
T 2pbi_B          153 HTNYLSACSFTNSDMQILTASGDGTCAL--WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG  230 (354)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEE--EETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEE--EeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            3445889999999999999999999999  777888888899999865433222  21 1244444444 4544441 12


Q ss_pred             eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092          104 RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus       104 ~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      +....+.+|    ..++|+|++++||+|+.|++|++||+++++.+.
T Consensus       231 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~  276 (354)
T 2pbi_B          231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA  276 (354)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            333445555    579999999999999999999999998876543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.85  E-value=4.4e-20  Score=139.46  Aligned_cols=143  Identities=13%  Similarity=0.097  Sum_probs=104.0

Q ss_pred             CeEeecCCeEEEEECCCCcc----ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQT----EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~----~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      |++|+.|++|++||+...+.    ++..+. .|..+|.+++|+|+|++|++|+.||+|+|  ||..+++...++.+|...
T Consensus        33 l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~~--wd~~~~~~~~~~~~h~~~  109 (319)
T 3frx_A           33 LLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWDKTLRL--WDVATGETYQRFVGHKSD  109 (319)
T ss_dssp             EEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTTEEEEEEECCSSC
T ss_pred             EEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEEE--EECCCCCeeEEEccCCCc
Confidence            58999999999999975432    223333 46678999999999999999999999999  788888888899999875


Q ss_pred             ceEEe--eccceeeeecCCCcceeeeeeeeeeeeeece----EEEEEecC------CCeEEEeCCCCcEEEeecCCceee
Q 032092           77 SETCS--VISFTSILAGDAPKYSSFYKVKRLHLFVKSH----VIVLFVQI------HHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        77 ~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fspd------g~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      .....  .....+++++.|..+++|..-.+....+.+|    ..++|+|.      +..|++|+.|+.|++||+++.+..
T Consensus       110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  189 (319)
T 3frx_A          110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE  189 (319)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh
Confidence            43322  2332234444444555554322334455555    46889884      458999999999999999987765


Q ss_pred             ec
Q 032092          145 KV  146 (147)
Q Consensus       145 ~~  146 (147)
                      .+
T Consensus       190 ~~  191 (319)
T 3frx_A          190 AD  191 (319)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.84  E-value=2.2e-20  Score=146.32  Aligned_cols=139  Identities=17%  Similarity=0.178  Sum_probs=94.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEe-ccCC--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC-HRDG--   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~-h~~~--   76 (147)
                      ||+|+.||+|+|||+.+++........+|..+|++|+|+| ++++|++|+.||+|+|  ||.+++. ...+.. |...  
T Consensus       135 lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i--wd~~~~~-~~~~~~~~~~~~~  211 (435)
T 4e54_B          135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL--QDFKGNI-LRVFASSDTINIW  211 (435)
T ss_dssp             EEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE--EETTSCE-EEEEECCSSCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE--eeccCCc-eeEEeccCCCCcc
Confidence            5899999999999999875432221235667899999999 6899999999999999  5665433 333332 3221  


Q ss_pred             --ceEEeeccceeeeecCCCcceeeeeee-eeeeeeece----EEEEEecCC-CeEEEeCCCCcEEEeecCCcee
Q 032092           77 --SETCSVISFTSILAGDAPKYSSFYKVK-RLHLFVKSH----VIVLFVQIH-HTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        77 --~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~  143 (147)
                        ...+..+.. ++++|+.++...++++. +....+.+|    ..++|+|++ .+|++|+.|+.|+|||+++.+.
T Consensus       212 ~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~  285 (435)
T 4e54_B          212 FCSLDVSASSR-MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG  285 (435)
T ss_dssp             CCCEEEETTTT-EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS
T ss_pred             EEEEEECCCCC-EEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc
Confidence              122333333 34555555433333333 333445555    579999998 4789999999999999987654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.84  E-value=1.1e-19  Score=140.72  Aligned_cols=143  Identities=17%  Similarity=0.092  Sum_probs=107.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++++.||.|++||+.+++. .......+..+|.+++|+|++++|++|+.||.|++  ||..+++...++.+|.......
T Consensus       106 l~~~~~d~~v~lw~~~~~~~-~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~v~~~  182 (401)
T 4aez_A          106 VVAVALERNVYVWNADSGSV-SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI--YDVESQTKLRTMAGHQARVGCL  182 (401)
T ss_dssp             EEEEEETTEEEEEETTTCCE-EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE--EETTTCCEEEEECCCSSCEEEE
T ss_pred             EEEEECCCeEEEeeCCCCcE-eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE--EECcCCeEEEEecCCCCceEEE
Confidence            47889999999999999864 34444445668999999999999999999999999  7777788888888887754444


Q ss_pred             eeccceeeeecCCCcceeeee--eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYK--VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..+.-.+++++.+..+.++..  .......+.+|    ..++|+|++++|++|+.||.|++||+++++.+.+
T Consensus       183 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  254 (401)
T 4aez_A          183 SWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT  254 (401)
T ss_dssp             EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE
T ss_pred             EECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE
Confidence            444443444455444444432  12334445555    5789999999999999999999999998877654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.3e-20  Score=152.46  Aligned_cols=137  Identities=12%  Similarity=0.063  Sum_probs=100.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEE--EEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCV--AAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~l--a~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-   76 (147)
                      |++|+.||+|++||+++++.+...+. .|..+|++|  +|+|+| ++||+|+.||+|+|  ||+++++...++.+|... 
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl--WD~~~~~~~~~~~~~~~~~  356 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI--FNPKDIATTKTTVSRFRGS  356 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCEEEEEETTSEEEE--ECGGGHHHHCEEEEECSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeEEEEeccCCeEEE--EECCCCCcccccccccccC
Confidence            68999999999999998755544343 456689999  578888 89999999999999  788877777778777531 


Q ss_pred             ---ceEEeeccceeeeecCCCcceeeeeee-eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           77 ---SETCSVISFTSILAGDAPKYSSFYKVK-RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        77 ---~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                         ...+..+...+++++.+..++++..-. .....+.+|    .+++|||+|++||+|+.||+|++||...
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence               234555444445555555565554211 112334455    5799999999999999999999999754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.84  E-value=1.7e-19  Score=134.85  Aligned_cols=142  Identities=15%  Similarity=0.163  Sum_probs=104.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      |++|+.||.|++||+++++. ...+. .+...|.+++|+|++++|++|+.||+|++  ||.++++....+..|.....  
T Consensus        80 l~s~~~d~~i~vwd~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~i--wd~~~~~~~~~~~~~~~~v~~~  155 (312)
T 4ery_A           80 LVSASDDKTLKIWDVSSGKC-LKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKTLPAHSDPVSAV  155 (312)
T ss_dssp             EEEEETTSEEEEEETTTCCE-EEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEE--EETTTCCEEEEECCCSSCEEEE
T ss_pred             EEEECCCCEEEEEECCCCcE-EEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEE--EECCCCEEEEEecCCCCcEEEE
Confidence            57899999999999999863 44443 35567999999999999999999999999  78787888888888876432  


Q ss_pred             EEeeccceeeeecCCCcceeeeeee-eeeeee-----eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVK-RLHLFV-----KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+..+...+++++.+..++++.... +....+     .....++|+|++++|++|+.||.|++||+++++++.+
T Consensus       156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  229 (312)
T 4ery_A          156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT  229 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            3333333344445544555444211 111122     2234689999999999999999999999999887764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.84  E-value=8.5e-20  Score=139.23  Aligned_cols=137  Identities=11%  Similarity=0.097  Sum_probs=95.6

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC-cceeEEEeccCCc-
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDGS-   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~-~~~~~~~~h~~~~-   77 (147)
                      |++|+.|++|+|||+.+++. ....+ ..|..+|.+++|+|++++|++|+.||+|++|+++.... .....+.+|.... 
T Consensus        76 l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~  154 (345)
T 3fm0_A           76 LASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK  154 (345)
T ss_dssp             EEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred             EEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence            58999999999999987642 22333 34667899999999999999999999999955543211 2344566776543 


Q ss_pred             -eEEeeccceeeeecCCCcceeeeeee---eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeec
Q 032092           78 -ETCSVISFTSILAGDAPKYSSFYKVK---RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        78 -~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                       ..+..+...+++++.|..++++....   .....+.+|    .+++|+|+|++||+|+.|++|+|||.
T Consensus       155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence             23333443344445555555554322   123455666    57999999999999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.84  E-value=6.8e-20  Score=149.52  Aligned_cols=142  Identities=13%  Similarity=0.127  Sum_probs=100.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC----CeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE----GRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d----g~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      ||+|+.||+|+|||+.+++.........+..+|.+++|+|||+.|++++.+    ++|++  ||.  ++...++.+|...
T Consensus        74 lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~--wd~--~~~~~~l~gh~~~  149 (611)
T 1nr0_A           74 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL--FDT--GTSNGNLTGQARA  149 (611)
T ss_dssp             EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE--TTT--CCBCBCCCCCSSC
T ss_pred             EEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE--eeC--CCCcceecCCCCC
Confidence            689999999999999765432222122456689999999999999988865    36666  885  4566677888765


Q ss_pred             ce--EEeeccceeeeecCCC-cceeeee-eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           77 SE--TCSVISFTSILAGDAP-KYSSFYK-VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        77 ~~--~~~v~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..  .+....-..+++|++| .++++.. ..+....+.+|    .+++|+|||++||||+.|++|++||..+++++.+
T Consensus       150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~  227 (611)
T 1nr0_A          150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  227 (611)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence            33  3333332234554444 5555541 12334456666    4799999999999999999999999998877654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.84  E-value=1.5e-19  Score=147.48  Aligned_cols=142  Identities=10%  Similarity=0.024  Sum_probs=101.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC------CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS------PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~------~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~   74 (147)
                      ||+|+.|++|+|||+++++. ...+..      .|..+|.+++|+|||++|++|+.|++|+|  ||.++++...++..+.
T Consensus       205 las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~l--Wd~~~~~~~~~~~~~~  281 (611)
T 1nr0_A          205 FASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI--WNVATLKVEKTIPVGT  281 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTTEEEEEEECCS
T ss_pred             EEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEE--EeCCCCceeeeecCCC
Confidence            58999999999999998864 333322      46678999999999999999999999999  7777777777776432


Q ss_pred             C---CceEEeeccceeeeecCCCcceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           75 D---GSETCSVISFTSILAGDAPKYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        75 ~---~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .   ...........+++++.+..++.+... .+....+.+|    ..++|+|||++|++|+.|++|++||+.++++..
T Consensus       282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR  360 (611)
T ss_dssp             SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence            1   111111223333444555455544321 1233445566    579999999999999999999999999877654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.84  E-value=1.6e-19  Score=140.69  Aligned_cols=138  Identities=14%  Similarity=0.158  Sum_probs=102.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec-CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      ||+| .|++|+|||+.+++. .+.+. ..+...|++|+|+|||++||+|+.||+|+|  ||..+++.+.++.+|.....+
T Consensus       119 lAvg-ld~tV~lWd~~tg~~-~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~i--Wd~~~~~~~~~~~~h~~~v~~  194 (420)
T 4gga_A          119 LAVA-LDNSVYLWSASSGDI-LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL--WDVQQQKRLRNMTSHSARVGS  194 (420)
T ss_dssp             EEEE-ETTEEEEEETTTCCE-EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEE--EETTTTEEEEEECCCSSCEEE
T ss_pred             EEEE-eCCEEEEEECCCCCE-EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEE--EEcCCCcEEEEEeCCCCceEE
Confidence            3454 599999999999864 33333 234557999999999999999999999999  777888888899999876555


Q ss_pred             EeeccceeeeecCCCcceeeee--eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           80 CSVISFTSILAGDAPKYSSFYK--VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      ...+...+++++.+..+..+..  .......+.+|    ..+.|+|+|+++++++.|+.+++||..+++
T Consensus       195 ~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          195 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred             EeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence            5555543344444444444331  12223445555    468999999999999999999999998764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.84  E-value=1.6e-19  Score=134.97  Aligned_cols=139  Identities=14%  Similarity=0.176  Sum_probs=94.9

Q ss_pred             CeEeecCCeEEEEECCCCc-cceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCC--cceeEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNPQ-TEFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQ--SKNFTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~-~~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~--~~~~~~~~h~~   75 (147)
                      ||+|+.|++|+|||+.... ++...+. .|..+|.+++|+|+  +++|++|+.||+|+|  ||.+++  .....+.+|..
T Consensus        24 las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i--Wd~~~~~~~~~~~~~~h~~  100 (297)
T 2pm7_B           24 MATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMI--WKEENGRWSQIAVHAVHSA  100 (297)
T ss_dssp             EEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEE--EEBSSSCBCCCEEECCCSS
T ss_pred             EEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEE--EEcCCCceEEEEEeecCCC
Confidence            6899999999999997542 2334443 56678999999864  899999999999999  555554  34556777766


Q ss_pred             Cce--EEeec--cceeeeecCCCcceeeeeee--ee-eeeeece----EEEEEecC-------------CCeEEEeCCCC
Q 032092           76 GSE--TCSVI--SFTSILAGDAPKYSSFYKVK--RL-HLFVKSH----VIVLFVQI-------------HHTFATAGSDG  131 (147)
Q Consensus        76 ~~~--~~~v~--~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~----~~~~fspd-------------g~~latg~~Dg  131 (147)
                      ...  .+...  ...+++++.|..++++..-.  .. ...+.+|    .+++|+|+             +++||+|+.|+
T Consensus       101 ~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~  180 (297)
T 2pm7_B          101 SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN  180 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTS
T ss_pred             ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC
Confidence            432  23222  22233444444455443211  11 2344555    57899997             57999999999


Q ss_pred             cEEEeecCCce
Q 032092          132 AFNFWDKDSKQ  142 (147)
Q Consensus       132 ~i~iWd~~~~~  142 (147)
                      +|+|||+++++
T Consensus       181 ~v~lwd~~~~~  191 (297)
T 2pm7_B          181 LVKIWKYNSDA  191 (297)
T ss_dssp             CEEEEEEETTT
T ss_pred             cEEEEEEcCCC
Confidence            99999987654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.84  E-value=7.2e-20  Score=140.62  Aligned_cols=141  Identities=18%  Similarity=0.206  Sum_probs=100.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCcceeEEEeccCC--c
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG--S   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~--~   77 (147)
                      |++|+.||+|++||+++++. ...+. .+..+|++++|+|+++ .+++++.||+|++  ||.++++....+..+...  .
T Consensus       154 l~sgs~dg~v~iwd~~~~~~-~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~--wd~~~~~~~~~~~~~~~~~~v  229 (357)
T 4g56_B          154 AVSGGKDFSVKVWDLSQKAV-LKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILL--WDTRKPKPATRIDFCASDTIP  229 (357)
T ss_dssp             EEEEETTSCEEEEETTTTEE-EEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEE--CCTTSSSCBCBCCCTTCCSCE
T ss_pred             EEEEeCCCeEEEEECCCCcE-EEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEE--EECCCCceeeeeeeccccccc
Confidence            58999999999999999853 44443 4566899999999975 7899999999999  888777665544332221  1


Q ss_pred             --eEEeeccceeeeecCCC-cceeeeeee--eeeeeeece----EEEEEecCC-CeEEEeCCCCcEEEeecCCceeeec
Q 032092           78 --ETCSVISFTSILAGDAP-KYSSFYKVK--RLHLFVKSH----VIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        78 --~~~~v~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~----~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                        ..+....-.++++|+++ .++++. +.  +....+.+|    ..++|+|++ ++||||+.|++|+|||++++++++.
T Consensus       230 ~~v~~sp~~~~~la~g~~d~~i~~wd-~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          230 TSVTWHPEKDDTFACGDETGNVSLVN-IKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             EEEEECTTSTTEEEEEESSSCEEEEE-SSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             cchhhhhcccceEEEeecccceeEEE-CCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence              12322333345555555 444443 22  223344444    579999998 6899999999999999999988764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.83  E-value=2.8e-19  Score=135.98  Aligned_cols=136  Identities=15%  Similarity=0.212  Sum_probs=99.0

Q ss_pred             CeEeecCCeEEEEECCCCcc------ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc
Q 032092            1 MVVGTADRNLVVFNLQNPQT------EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~------~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~   74 (147)
                      |++|+.|++|+|||+.+.+.      +...+ ..|..+|.+++|+|+++++++|+.||+|+|  ||.++++...++.+|.
T Consensus        42 l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~~~~l~s~s~D~~v~l--wd~~~~~~~~~~~~h~  118 (343)
T 2xzm_R           42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQENCFAISSSWDKTLRL--WDLRTGTTYKRFVGHQ  118 (343)
T ss_dssp             EEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSSTTEEEEEETTSEEEE--EETTSSCEEEEEECCC
T ss_pred             EEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCCCCEEEEEcCCCcEEE--EECCCCcEEEEEcCCC
Confidence            58999999999999986531      22223 346678999999999999999999999999  7888888888999998


Q ss_pred             CCce--EEeeccceeeeecCCCcceeeeeeeeeeeee---ece----EEEEEecCC----------CeEEEeCCCCcEEE
Q 032092           75 DGSE--TCSVISFTSILAGDAPKYSSFYKVKRLHLFV---KSH----VIVLFVQIH----------HTFATAGSDGAFNF  135 (147)
Q Consensus        75 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~fspdg----------~~latg~~Dg~i~i  135 (147)
                      ....  .+..+...++++|.|..+++|..........   .+|    ..++|+|++          ++|++|+.||.|++
T Consensus       119 ~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  198 (343)
T 2xzm_R          119 SEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV  198 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred             CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEE
Confidence            7543  3334444445556555666554222111111   133    468999987          78999999999999


Q ss_pred             eecC
Q 032092          136 WDKD  139 (147)
Q Consensus       136 Wd~~  139 (147)
                      ||..
T Consensus       199 wd~~  202 (343)
T 2xzm_R          199 WNTN  202 (343)
T ss_dssp             EETT
T ss_pred             EcCC
Confidence            9953

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.83  E-value=3.3e-19  Score=135.19  Aligned_cols=140  Identities=11%  Similarity=0.071  Sum_probs=93.9

Q ss_pred             CeEeecCCeEEEEECCCCc------cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC--CCcceeEEEe
Q 032092            1 MVVGTADRNLVVFNLQNPQ------TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS--QQSKNFTFKC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~------~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~--~~~~~~~~~~   72 (147)
                      |++|+.|++|+|||+....      .+...+ ..|..+|.+++|+|+|++|++|+.||+|+||+.+..  ..+.+..+.+
T Consensus        73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~  151 (330)
T 2hes_X           73 LAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE  151 (330)
T ss_dssp             EEEEETTSCEEEEEC-------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC
T ss_pred             EEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc
Confidence            5899999999999996431      122223 346678999999999999999999999999544221  1234566778


Q ss_pred             ccCCce--EEeeccceeeeecCCCcceeeeeee---eeeeeeece----EEEEEecC--CCeEEEeCCCCcEEEeecCCc
Q 032092           73 HRDGSE--TCSVISFTSILAGDAPKYSSFYKVK---RLHLFVKSH----VIVLFVQI--HHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        73 h~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~fspd--g~~latg~~Dg~i~iWd~~~~  141 (147)
                      |.....  .+..+...++++|.|..++++....   +....+.+|    ..++|+|+  +.+|++|+.|++|++||++++
T Consensus       152 h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            876532  3434444344555555666654321   334566676    46899998  678999999999999998654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.83  E-value=4.3e-19  Score=131.82  Aligned_cols=58  Identities=12%  Similarity=0.114  Sum_probs=46.9

Q ss_pred             CeEeecCCeEEEEECCCCcc--------ceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEee
Q 032092            1 MVVGTADRNLVVFNLQNPQT--------EFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHL   59 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~--------~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~   59 (147)
                      |++|+.||.|++||+++++.        +...+. .+..+|.+++|+|+  +++|++|+.||.|++|+.
T Consensus        74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~  141 (351)
T 3f3f_A           74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA  141 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred             EEEEcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence            58899999999999998642        223332 45568999999999  999999999999999443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.83  E-value=3.7e-20  Score=142.72  Aligned_cols=102  Identities=8%  Similarity=0.074  Sum_probs=82.7

Q ss_pred             CeEeecCC----eEEEEECCCCccce---eEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE-Ee
Q 032092            1 MVVGTADR----NLVVFNLQNPQTEF---KRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF-KC   72 (147)
Q Consensus         1 l~~gs~dg----~v~iwdi~~~~~~~---~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~-~~   72 (147)
                      |++++.|+    .+++||+.......   ..+. .+..+|++++|||||++||+|+.||+|+|  ||.++++.+.++ .+
T Consensus       234 l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~D~~V~i--wd~~~~~~~~~~~~g  310 (365)
T 4h5i_A          234 LIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASNDNSIAL--VKLKDLSMSKIFKQA  310 (365)
T ss_dssp             EEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEETTSCEEE--EETTTTEEEEEETTS
T ss_pred             EEEEecCCcceeEEeecccccceecceeeeeec-CCCCCeEeEEECCCCCceEEEcCCCEEEE--EECCCCcEEEEecCc
Confidence            46777776    68899998764321   1122 34567999999999999999999999999  788888888776 57


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      |..     +|+++                              +|||||++|||||.|++|+|||+.+
T Consensus       311 H~~-----~V~~v------------------------------~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          311 HSF-----AITEV------------------------------TISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SSS-----CEEEE------------------------------EECTTSCEEEEEETTSEEEEEECCT
T ss_pred             ccC-----CEEEE------------------------------EECCCCCEEEEEeCCCeEEEEEcCC
Confidence            875     47777                              9999999999999999999999854

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=4.7e-20  Score=140.14  Aligned_cols=106  Identities=8%  Similarity=0.030  Sum_probs=86.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcce-eEEEe-ccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN-FTFKC-HRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~-~~~~~-h~~~~~   78 (147)
                      |++|+.||+|++||+++++. .......+..++.+++|+|||++|++|+.||.|+|  ||.++++.. .++.+ |..   
T Consensus       142 l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i--wd~~~~~~~~~~~~~~h~~---  215 (343)
T 3lrv_A          142 FIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV--YNLSSPDQASSRFPVDEEA---  215 (343)
T ss_dssp             EEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE--EESSCTTSCCEECCCCTTS---
T ss_pred             EEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE--EECCCCCCCccEEeccCCC---
Confidence            57899999999999999864 33333344457999999999999999999999999  777777766 67776 764   


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                        ++.++                              +|+|+|++|++|+ |+.|++||+++++.++
T Consensus       216 --~v~~l------------------------------~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~  249 (343)
T 3lrv_A          216 --KIKEV------------------------------KFADNGYWMVVEC-DQTVVCFDLRKDVGTL  249 (343)
T ss_dssp             --CEEEE------------------------------EECTTSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred             --CEEEE------------------------------EEeCCCCEEEEEe-CCeEEEEEcCCCCcce
Confidence              46666                              9999999999999 5599999999886654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.82  E-value=9.2e-20  Score=140.60  Aligned_cols=107  Identities=15%  Similarity=0.281  Sum_probs=91.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.||.|++||+++++. .. ....+..+|++++|+|++++|++|+.||+|++  ||.++++...++.+|..     
T Consensus       112 l~~~~~dg~i~iwd~~~~~~-~~-~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i--wd~~~~~~~~~~~~h~~-----  182 (420)
T 3vl1_A          112 FILGTTEGDIKVLDSNFNLQ-RE-IDQAHVSEITKLKFFPSGEALISSSQDMQLKI--WSVKDGSNPRTLIGHRA-----  182 (420)
T ss_dssp             EEEEETTSCEEEECTTSCEE-EE-ETTSSSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTCCCCEEEECCSS-----
T ss_pred             EEEEECCCCEEEEeCCCcce-ee-ecccccCccEEEEECCCCCEEEEEeCCCeEEE--EeCCCCcCceEEcCCCC-----
Confidence            58899999999999998753 33 32356678999999999999999999999999  77777888888888875     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+.++                              +|+|++++|++|+.||.|++||+++++.+.+
T Consensus       183 ~v~~~------------------------------~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  218 (420)
T 3vl1_A          183 TVTDI------------------------------AIIDRGRNVLSASLDGTIRLWECGTGTTIHT  218 (420)
T ss_dssp             CEEEE------------------------------EEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cEEEE------------------------------EEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence            36666                              9999999999999999999999999888765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.82  E-value=2.6e-19  Score=143.29  Aligned_cols=131  Identities=20%  Similarity=0.197  Sum_probs=98.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      |++|+.|++|++||+...  ....+. .+..+|++++|+||+++|++++.|++|++  ||. +++.+.++.+|.....  
T Consensus       441 l~~~~~d~~v~~w~~~~~--~~~~~~-~~~~~v~~~~~spd~~~las~~~d~~i~i--w~~-~~~~~~~~~~h~~~v~~l  514 (577)
T 2ymu_A          441 IASASDDKTVKLWNRNGQ--LLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKL--WNR-NGQLLQTLTGHSSSVRGV  514 (577)
T ss_dssp             EEEEETTSEEEEEETTSC--EEEEEE-CCSSCEEEEEECTTSCEEEEEETTSEEEE--EET-TSCEEEEEECCSSCEEEE
T ss_pred             EEEEcCCCEEEEEECCCC--EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEE--EcC-CCCEEEEEeCCCCCEEEE
Confidence            578999999999997543  233443 45668999999999999999999999999  564 5778889999987532  


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEee
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd  137 (147)
                      ++..+...+++++.|..+++|..-.+....+.+|    ..++|+|||++|+||+.|++|++||
T Consensus       515 ~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          515 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            3444444344445555566555222344556666    4799999999999999999999998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.82  E-value=3.3e-20  Score=145.37  Aligned_cols=140  Identities=8%  Similarity=0.067  Sum_probs=97.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC--CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS--PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~--~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |++|+.||+|+|||+++...  ..+..  .....+.+++|+|++++|++|+.||+|++  ||.+ ++.+.++.+|.....
T Consensus       180 l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~--wd~~-~~~~~~~~~h~~~v~  254 (435)
T 4e54_B          180 FYASSMEGTTRLQDFKGNIL--RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVIL--LNMD-GKELWNLRMHKKKVT  254 (435)
T ss_dssp             EEEECSSSCEEEEETTSCEE--EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEE--EESS-SCBCCCSBCCSSCEE
T ss_pred             EEEEeCCCEEEEeeccCCce--eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEee--eccC-cceeEEEecccceEE
Confidence            58999999999999987632  22222  22345789999999999999999999999  5654 456677788876533


Q ss_pred             E--EeeccceeeeecCCC-cceeee--eee--eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           79 T--CSVISFTSILAGDAP-KYSSFY--KVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        79 ~--~~v~~~~~~~~~~~~-~~~~~~--~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .  +....-.++++|+.+ .+++|.  ..+  .......+|    .+++|+|+|++|+||+.||.|+|||+.++++..
T Consensus       255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~  332 (435)
T 4e54_B          255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL  332 (435)
T ss_dssp             EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred             eeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence            2  222332345555544 444443  111  112223344    578999999999999999999999998876543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.82  E-value=1.4e-19  Score=139.70  Aligned_cols=108  Identities=19%  Similarity=0.313  Sum_probs=89.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec----CCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCC-CCcceeEEEecc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN----SPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDS-QQSKNFTFKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~----~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~-~~~~~~~~~~h~   74 (147)
                      |++|+.|++|++||+++++. ...+.    ..+...|.+++++| ++++|++|+.||+|++  ||.+ .++...++.+|.
T Consensus       173 l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~--wd~~~~~~~~~~~~~h~  249 (380)
T 3iz6_a          173 LITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL--WDLRITSRAVRTYHGHE  249 (380)
T ss_dssp             EEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE--EETTTTCCCCEEECCCS
T ss_pred             EEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE--EECCCCCcceEEECCcC
Confidence            57999999999999999864 33331    23556799999987 7899999999999999  6665 346677788887


Q ss_pred             CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .     .++++                              +|+|+|++|+||+.||+|++||+++++.+.+
T Consensus       250 ~-----~v~~v------------------------------~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          250 G-----DINSV------------------------------KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             S-----CCCEE------------------------------EECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             C-----CeEEE------------------------------EEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence            5     46776                              9999999999999999999999999887654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.82  E-value=5.2e-19  Score=136.28  Aligned_cols=139  Identities=8%  Similarity=-0.113  Sum_probs=90.1

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE--EeccCC--c
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF--KCHRDG--S   77 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~--~~h~~~--~   77 (147)
                      |+|+.|++|+|||+++++. ...+.  +..+|.+|+|+|||+++++++.++. .+  |+..+++.....  .+|...  .
T Consensus       151 as~~~d~~i~iwd~~~~~~-~~~~~--~~~~V~~v~fspdg~~l~s~s~~~~-~~--~~~~~~~~~~~~~~~~~~~~v~~  224 (365)
T 4h5i_A          151 ASSKVPAIMRIIDPSDLTE-KFEIE--TRGEVKDLHFSTDGKVVAYITGSSL-EV--ISTVTGSCIARKTDFDKNWSLSK  224 (365)
T ss_dssp             EESCSSCEEEEEETTTTEE-EEEEE--CSSCCCEEEECTTSSEEEEECSSCE-EE--EETTTCCEEEEECCCCTTEEEEE
T ss_pred             EECCCCCEEEEeECCCCcE-EEEeC--CCCceEEEEEccCCceEEeccceeE-EE--EEeccCcceeeeecCCCCCCEEE
Confidence            3456799999999999864 34443  3457999999999999999986654 45  344444443322  334332  1


Q ss_pred             eEEeeccceeeeecCCCc---ceeeeeee----ee--eeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           78 ETCSVISFTSILAGDAPK---YSSFYKVK----RL--HLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~---~~~~~~~~----~~--~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      ..+..+...+++++.+..   ....+++.    ..  ...+.+|    .+++|+|||++||+|+.|++|+|||+++++++
T Consensus       225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~  304 (365)
T 4h5i_A          225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS  304 (365)
T ss_dssp             EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE
Confidence            234444444444444442   11122221    11  1233443    67999999999999999999999999999988


Q ss_pred             ec
Q 032092          145 KV  146 (147)
Q Consensus       145 ~~  146 (147)
                      ++
T Consensus       305 ~~  306 (365)
T 4h5i_A          305 KI  306 (365)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.82  E-value=3.5e-19  Score=146.84  Aligned_cols=140  Identities=18%  Similarity=0.225  Sum_probs=99.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE----EeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF----KCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~----~~h~~~   76 (147)
                      |++|+.||+|+|||+++++. ...+. .|..+|.+++|+|++++|++|+.|++|+|  ||.... ....+    .+|...
T Consensus       445 l~sgs~Dg~v~vwd~~~~~~-~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~i--wd~~~~-~~~~~~~~~~~h~~~  519 (694)
T 3dm0_A          445 ALSGSWDGELRLWDLAAGVS-TRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKL--WNTLGE-CKYTISEGGEGHRDW  519 (694)
T ss_dssp             EEEEETTSEEEEEETTTTEE-EEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEE--ECTTSC-EEEEECSSTTSCSSC
T ss_pred             EEEEeCCCcEEEEECCCCcc-eeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEE--EECCCC-cceeeccCCCCCCCc
Confidence            58999999999999999854 34443 46678999999999999999999999999  666432 22222    235443


Q ss_pred             ce--EEeeccc-eeeee-cCCCcceeeeeee--eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           77 SE--TCSVISF-TSILA-GDAPKYSSFYKVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        77 ~~--~~~v~~~-~~~~~-~~~~~~~~~~~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..  .+..+.. ..+++ +.|..++++. +.  +....+.+|    ..++|+|+|++|++|+.||.|+|||+++++++++
T Consensus       520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd-~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~  598 (694)
T 3dm0_A          520 VSCVRFSPNTLQPTIVSASWDKTVKVWN-LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS  598 (694)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEE-TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC
T ss_pred             EEEEEEeCCCCcceEEEEeCCCeEEEEE-CCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            22  2222221 23444 4444555544 32  233455666    4799999999999999999999999999988765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.82  E-value=1.2e-19  Score=136.96  Aligned_cols=137  Identities=14%  Similarity=0.178  Sum_probs=95.4

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEcc--CCCEEEEEeeCCeEEEEeecCCCC--cceeEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFP--DQQGFWVGSIEGRVGVHHLDDSQQ--SKNFTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~sp--dg~~l~~g~~dg~i~i~~~d~~~~--~~~~~~~~h~~   75 (147)
                      ||+|+.|++|+|||+++++. ....+. .|..+|.+++|+|  ++++|++|+.|++|+|  ||.+++  +...++.+|..
T Consensus        28 lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i--Wd~~~~~~~~~~~~~~h~~  104 (316)
T 3bg1_A           28 LATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVII--WREENGTWEKSHEHAGHDS  104 (316)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEE--ECCSSSCCCEEEEECCCSS
T ss_pred             EEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEE--EECCCCcceEEEEccCCCC
Confidence            68999999999999988642 233333 4667899999986  4899999999999999  676655  34566778876


Q ss_pred             Cce--EEeecc-ceeeeecCCC-cceeeeeeee-----eeeeeece----EEEEEecC-----------------CCeEE
Q 032092           76 GSE--TCSVIS-FTSILAGDAP-KYSSFYKVKR-----LHLFVKSH----VIVLFVQI-----------------HHTFA  125 (147)
Q Consensus        76 ~~~--~~~v~~-~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~----~~~~fspd-----------------g~~la  125 (147)
                      ...  .+.... -.++++|+.+ .++++. +..     ....+.+|    ..++|+|+                 +++||
T Consensus       105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (316)
T 3bg1_A          105 SVNSVCWAPHDYGLILACGSSDGAISLLT-YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA  183 (316)
T ss_dssp             CCCEEEECCTTTCSCEEEECSSSCEEEEE-ECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE
T ss_pred             ceEEEEECCCCCCcEEEEEcCCCCEEEEe-cCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEE
Confidence            432  333331 1245555555 444443 221     12233445    46899998                 47999


Q ss_pred             EeCCCCcEEEeecCCc
Q 032092          126 TAGSDGAFNFWDKDSK  141 (147)
Q Consensus       126 tg~~Dg~i~iWd~~~~  141 (147)
                      +|+.|++|++||+++.
T Consensus       184 sgs~D~~v~lWd~~~~  199 (316)
T 3bg1_A          184 SGGCDNLIKLWKEEED  199 (316)
T ss_dssp             CCBTTSBCCEEEECTT
T ss_pred             EecCCCeEEEEEeCCC
Confidence            9999999999999754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.81  E-value=9.1e-19  Score=137.12  Aligned_cols=140  Identities=11%  Similarity=0.144  Sum_probs=104.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.||.|++||+++++. ...+. .+..+|.+++|+|+++++++|+.||+|++  ||.++++.+.++.+|.......
T Consensus       283 l~~~~~d~~i~vwd~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~v--wd~~~~~~~~~~~~h~~~v~~~  358 (464)
T 3v7d_B          283 VVSGSYDNTLIVWDVAQMKC-LYILS-GHTDRIYSTIYDHERKRCISASMDTTIRI--WDLENGELMYTLQGHTALVGLL  358 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEE-EEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEE--EETTTTEEEEEECCCSSCEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcE-EEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEE--EECCCCcEEEEEeCCCCcEEEE
Confidence            57899999999999998853 44443 45668999999999999999999999999  7888888889999888764444


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeee---ec--eEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFV---KS--HVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ....-.+++++.|..++++. +.......   ..  ...++|+|++++|++|+ ||.|++||+++++++++
T Consensus       359 ~~~~~~l~s~s~dg~v~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          359 RLSDKFLVSAAADGSIRGWD-ANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             EECSSEEEEEETTSEEEEEE-TTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             EEcCCEEEEEeCCCcEEEEE-CCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence            44443344445544555444 32211111   11  13579999999999998 99999999999998875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.81  E-value=1.8e-19  Score=135.87  Aligned_cols=137  Identities=14%  Similarity=0.185  Sum_probs=92.0

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCCcc---eeEEEecc
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQSK---NFTFKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~~~---~~~~~~h~   74 (147)
                      |++|+.|++|+|||+++++. ....+ ..|..+|++++|+|+  +.+|++|+.||+|++|++  +.+..   ...+.+|.
T Consensus        74 l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~--~~~~~~~~~~~~~~h~  150 (316)
T 3bg1_A           74 LASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY--TGEGQWEVKKINNAHT  150 (316)
T ss_dssp             EEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEE--CSSSCEEECCBTTSSS
T ss_pred             EEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEec--CCCCCcceeeeecccc
Confidence            58999999999999998642 22233 245668999999998  789999999999999544  43321   22334554


Q ss_pred             CCc--eEEeecc----------------ceeeeecCCC-cceeeeeee----eeeeeeece----EEEEEecCC----Ce
Q 032092           75 DGS--ETCSVIS----------------FTSILAGDAP-KYSSFYKVK----RLHLFVKSH----VIVLFVQIH----HT  123 (147)
Q Consensus        75 ~~~--~~~~v~~----------------~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~----~~~~fspdg----~~  123 (147)
                      ...  ..+....                ...+++|+.| .++++....    +....+.+|    ..++|+|++    ++
T Consensus       151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence            421  1222211                1245555555 455544211    233456666    479999987    88


Q ss_pred             EEEeCCCCcEEEeecCC
Q 032092          124 FATAGSDGAFNFWDKDS  140 (147)
Q Consensus       124 latg~~Dg~i~iWd~~~  140 (147)
                      ||+|+.||+|+|||+++
T Consensus       231 las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             EEEEETTCEEEEEECSS
T ss_pred             EEEEcCCCeEEEEEccC
Confidence            99999999999999876

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.81  E-value=1.8e-19  Score=138.19  Aligned_cols=100  Identities=11%  Similarity=0.074  Sum_probs=82.8

Q ss_pred             eecCCeEEEEECCCCcc--------------c-eeEecCCCCcceEEEEEccCCCEEEEEeeCCe-EEEEeecCCCCcce
Q 032092            4 GTADRNLVVFNLQNPQT--------------E-FKRINSPLKYQMRCVAAFPDQQGFWVGSIEGR-VGVHHLDDSQQSKN   67 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~--------------~-~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~-i~i~~~d~~~~~~~   67 (147)
                      |+.||.|++||+++++.              + ...+ ..|..+|++++|+|||++||+|+.||+ |+|  ||.++++.+
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i--wd~~~~~~~  231 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRKSDMVATCSQDGTIIRV--FKTEDGVLV  231 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTCSEEEE--EETTTCCEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEE-EccCCceEEEEECCCCCEEEEEeCCCCEEEE--EECCCCcEE
Confidence            68899999999998641              1 2333 356678999999999999999999998 999  788888888


Q ss_pred             eEEE-e-ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           68 FTFK-C-HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        68 ~~~~-~-h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      .++. + |..     ++.++                              +|+|+|++|++|+.|++|+|||+++.
T Consensus       232 ~~~~~g~h~~-----~v~~~------------------------------~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          232 REFRRGLDRA-----DVVDM------------------------------KWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEECTTCCS-----CEEEE------------------------------EECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEcCCCCC-----cEEEE------------------------------EECCCCCEEEEEECCCEEEEEEccCC
Confidence            8887 5 664     46666                              99999999999999999999999764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.81  E-value=1.1e-18  Score=135.09  Aligned_cols=140  Identities=19%  Similarity=0.239  Sum_probs=99.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEE-------Ee
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTF-------KC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~-------~~   72 (147)
                      |++|+.|++|++||+++++. ...+.  +...+.+++|+| ++++|++|+.||+|++  ||.++++....+       .+
T Consensus       180 l~s~s~d~~v~iwd~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~i--wd~~~~~~~~~~~~~~~~~~~  254 (393)
T 1erj_A          180 LVSGSGDRTVRIWDLRTGQC-SLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRV--WDSETGFLVERLDSENESGTG  254 (393)
T ss_dssp             EEEEETTSEEEEEETTTTEE-EEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEE--EETTTCCEEEEEC------CC
T ss_pred             EEEecCCCcEEEEECCCCee-EEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEE--EECCCCcEEEeecccccCCCC
Confidence            57899999999999999864 23333  234689999999 8999999999999999  777777666555       35


Q ss_pred             ccCCce--EEeeccceeeeecCCCcceeeeeee--------------eeeeeeece----EEEEEecCCCeEEEeCCCCc
Q 032092           73 HRDGSE--TCSVISFTSILAGDAPKYSSFYKVK--------------RLHLFVKSH----VIVLFVQIHHTFATAGSDGA  132 (147)
Q Consensus        73 h~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~----~~~~fspdg~~latg~~Dg~  132 (147)
                      |.....  .+..+...+++++.|..+++|. +.              .....+.+|    .+++|+|++++|++|+.|+.
T Consensus       255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~  333 (393)
T 1erj_A          255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWN-LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG  333 (393)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEE-C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCEEEEEE-CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence            554322  3333333334444444454443 21              112344555    47999999999999999999


Q ss_pred             EEEeecCCceeeec
Q 032092          133 FNFWDKDSKQRLKV  146 (147)
Q Consensus       133 i~iWd~~~~~~~~~  146 (147)
                      |++||.++++.+.+
T Consensus       334 v~iwd~~~~~~~~~  347 (393)
T 1erj_A          334 VLFWDKKSGNPLLM  347 (393)
T ss_dssp             EEEEETTTCCEEEE
T ss_pred             EEEEECCCCeEEEE
Confidence            99999999887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.81  E-value=1.7e-19  Score=137.49  Aligned_cols=139  Identities=17%  Similarity=0.077  Sum_probs=90.2

Q ss_pred             CeEeecCCeEEEEECCCCc--cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCc---ceeEEEe-cc
Q 032092            1 MVVGTADRNLVVFNLQNPQ--TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQS---KNFTFKC-HR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~--~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~---~~~~~~~-h~   74 (147)
                      |++|+.||+|++||+.+++  .+...+ ..+..+|.+++|+|++++|++|+.||+|++  ||.++++   ....+.+ |.
T Consensus        70 l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i--wd~~~~~~~~~~~~~~~~h~  146 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISV--CYFEQENDWWVSKHLKRPLR  146 (377)
T ss_dssp             EEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEE--CCC-----CCCCEEECSSCC
T ss_pred             EEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEE--EEECCcccceeeeEeecccC
Confidence            5889999999999999875  122222 245668999999999999999999999999  6666554   3566666 76


Q ss_pred             CCce--EEeeccceeeeecCCCcceeeee-------------------eeeeeeeeece----EEEEEecCCCeEEEeCC
Q 032092           75 DGSE--TCSVISFTSILAGDAPKYSSFYK-------------------VKRLHLFVKSH----VIVLFVQIHHTFATAGS  129 (147)
Q Consensus        75 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~----~~~~fspdg~~latg~~  129 (147)
                      ....  .+..+...+++++.|..++++..                   ..+....+ +|    ..++|+|+|++|++|+.
T Consensus       147 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~  225 (377)
T 3dwl_C          147 STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH  225 (377)
T ss_dssp             SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET
T ss_pred             CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC
Confidence            5433  23333333344444444544442                   12223333 54    57999999999999999


Q ss_pred             CCcEEEeecCCcee
Q 032092          130 DGAFNFWDKDSKQR  143 (147)
Q Consensus       130 Dg~i~iWd~~~~~~  143 (147)
                      ||.|++||+++++.
T Consensus       226 d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          226 DSSVTIAYPSAPEQ  239 (377)
T ss_dssp             TTEEC-CEECSTTS
T ss_pred             CCcEEEEECCCCCC
Confidence            99999999998765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.81  E-value=8.4e-19  Score=135.84  Aligned_cols=137  Identities=17%  Similarity=0.238  Sum_probs=92.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-ceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~~   79 (147)
                      |++|+.||+|+|||+.+++. ...+. .|..+|.+++|+|++++|++|+.||+|++  ||.++++...++..+... ...
T Consensus       138 l~s~~~d~~i~iwd~~~~~~-~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~i--wd~~~~~~~~~~~~~~~v~~~~  213 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKI-VMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRI--WDLRTGQCSLTLSIEDGVTTVA  213 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEE-EEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTTEEEEEEECSSCEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcE-EEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEE--EECCCCeeEEEEEcCCCcEEEE
Confidence            58899999999999998753 34443 46678999999999999999999999999  777777766666533221 112


Q ss_pred             EeeccceeeeecCCC-cceeeee-----eeee---eeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           80 CSVISFTSILAGDAP-KYSSFYK-----VKRL---HLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~-~~~~~~~-----~~~~---~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      +....-..+++|+.+ .++++..     +.+.   .....+|    .+++|+|+|++|++|+.||.|++||+++.
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            222122344444444 4554431     1111   1111344    57999999999999999999999999764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.81  E-value=8.3e-19  Score=144.62  Aligned_cols=143  Identities=15%  Similarity=0.167  Sum_probs=105.0

Q ss_pred             CeEeecCCeEEEEECCCCccc----eeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTE----FKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~----~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      |++|+.||+|+|||+.+....    ...+ ..|...|++++|+|++++|++|+.||+|+|  ||..+++...++.+|...
T Consensus       398 l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v--wd~~~~~~~~~~~~h~~~  474 (694)
T 3dm0_A          398 IVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSDGQFALSGSWDGELRL--WDLAAGVSTRRFVGHTKD  474 (694)
T ss_dssp             EEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTTEEEEEEECCSSC
T ss_pred             EEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCCCCEEEEEeCCCcEEE--EECCCCcceeEEeCCCCC
Confidence            589999999999999875321    1222 246678999999999999999999999999  777778888899999875


Q ss_pred             ce--EEeeccceeeeecCCCcceeeeeeeeeeee----eece----EEEEEecCC--CeEEEeCCCCcEEEeecCCceee
Q 032092           77 SE--TCSVISFTSILAGDAPKYSSFYKVKRLHLF----VKSH----VIVLFVQIH--HTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        77 ~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~fspdg--~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      ..  .+..+.-.++++|.|..++++.........    ..+|    ..++|+|++  ..|++|+.|++|++||+++++++
T Consensus       475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~  554 (694)
T 3dm0_A          475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR  554 (694)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence            43  333344334555665566665532221111    1344    468999987  68999999999999999988776


Q ss_pred             ec
Q 032092          145 KV  146 (147)
Q Consensus       145 ~~  146 (147)
                      .+
T Consensus       555 ~~  556 (694)
T 3dm0_A          555 ST  556 (694)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.81  E-value=6.1e-19  Score=136.27  Aligned_cols=142  Identities=12%  Similarity=0.044  Sum_probs=99.8

Q ss_pred             eEeecCCeEEEEECCCCcc---ceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCC-------cceeEE
Q 032092            2 VVGTADRNLVVFNLQNPQT---EFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQ-------SKNFTF   70 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~---~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~-------~~~~~~   70 (147)
                      ++|+.||.|+|||+.+..+   ....+ ..|..+|.+++|+| ++++|++|+.||+|+|  ||..++       +....+
T Consensus        51 ~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~v--w~~~~~~~~~~~~~~~~~~  127 (402)
T 2aq5_A           51 CEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHNDNVIASGSEDCTVMV--WEIPDGGLVLPLREPVITL  127 (402)
T ss_dssp             BCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCTTEEEEEETTSEEEE--EECCTTCCSSCBCSCSEEE
T ss_pred             EEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEE--EEccCCCCccccCCceEEe
Confidence            3578899999999976432   11222 24667899999999 8999999999999999  555544       566788


Q ss_pred             EeccCCce--EEeeccceeeee-cCCCcceeeeee-eeeeeee--ece----EEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           71 KCHRDGSE--TCSVISFTSILA-GDAPKYSSFYKV-KRLHLFV--KSH----VIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        71 ~~h~~~~~--~~~v~~~~~~~~-~~~~~~~~~~~~-~~~~~~~--~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .+|.....  .+....-.++++ +.|..+.++... .+....+  .+|    ..++|+|++++|++|+.||.|++||+++
T Consensus       128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  207 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK  207 (402)
T ss_dssp             ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred             cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence            88886543  333333224444 444445544411 1223334  344    5799999999999999999999999999


Q ss_pred             ceeeec
Q 032092          141 KQRLKV  146 (147)
Q Consensus       141 ~~~~~~  146 (147)
                      ++.+.+
T Consensus       208 ~~~~~~  213 (402)
T 2aq5_A          208 GTVVAE  213 (402)
T ss_dssp             TEEEEE
T ss_pred             Cceeee
Confidence            887754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.81  E-value=2.9e-18  Score=128.27  Aligned_cols=143  Identities=18%  Similarity=0.186  Sum_probs=91.1

Q ss_pred             CeEeecCCeEEEEECCCCccc----eeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTE----FKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~----~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      ||||+.||+|+|||+.+.+..    ...+ ..|..+|.+++|+|+|++|++|+.||.|++  |+............+...
T Consensus        54 l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~--~~~~~~~~~~~~~~~~~~  130 (340)
T 4aow_A           54 ILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISSDGQFALSGSWDGTLRL--WDLTTGTTTRRFVGHTKD  130 (340)
T ss_dssp             EEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTTEEEEEEECCSSC
T ss_pred             EEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECCCCCEEEEEcccccceE--EeecccceeeeecCCCCc
Confidence            589999999999999876532    2223 346678999999999999999999999999  554433332222222111


Q ss_pred             ce---------------------------------------------EEeecc-ceeeee-cCCCcceeeeee-eeeeee
Q 032092           77 SE---------------------------------------------TCSVIS-FTSILA-GDAPKYSSFYKV-KRLHLF  108 (147)
Q Consensus        77 ~~---------------------------------------------~~~v~~-~~~~~~-~~~~~~~~~~~~-~~~~~~  108 (147)
                      ..                                             .+.... ..++++ +.+..++++..- .+....
T Consensus       131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  210 (340)
T 4aow_A          131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN  210 (340)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             eeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence            00                                             000000 011222 223333333211 122334


Q ss_pred             eece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092          109 VKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       109 ~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +.+|    ..++|+|++++|++|+.||.|++||+++.+.++.
T Consensus       211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence            4444    4689999999999999999999999999887764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.80  E-value=9.2e-19  Score=131.58  Aligned_cols=138  Identities=12%  Similarity=0.085  Sum_probs=94.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc---CCCEEEEEeeCCeEEEEeecCCCCcceeEEE-----e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP---DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-----C   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp---dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-----~   72 (147)
                      |++|+.||.|++||+++++. ....  .+..+|.+++|+|   +++.|++|+.||.|++  ||.++++....+.     +
T Consensus       183 l~~~~~d~~i~i~d~~~~~~-~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i--~d~~~~~~~~~~~~~~~~~  257 (357)
T 3i2n_A          183 VCAGYDNGDIKLFDLRNMAL-RWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHV--FDMRTQHPTKGFASVSEKA  257 (357)
T ss_dssp             EEEEETTSEEEEEETTTTEE-EEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEE--EEEEEEETTTEEEEEEEEC
T ss_pred             EEEEccCCeEEEEECccCce-eeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEE--EeCcCCCcccceeeeccCC
Confidence            57889999999999999864 2222  3456799999999   9999999999999999  5555555444443     6


Q ss_pred             ccCCce--EEeeccceeeeecCCCc-ceeeeeee---------------------eeeeeeece----EEEEEecCCCeE
Q 032092           73 HRDGSE--TCSVISFTSILAGDAPK-YSSFYKVK---------------------RLHLFVKSH----VIVLFVQIHHTF  124 (147)
Q Consensus        73 h~~~~~--~~~v~~~~~~~~~~~~~-~~~~~~~~---------------------~~~~~~~~~----~~~~fspdg~~l  124 (147)
                      |.....  .+....-.++++|+.++ +.++. +.                     +....+.+|    ..++|+|+|++|
T Consensus       258 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  336 (357)
T 3i2n_A          258 HKSTVWQVRHLPQNRELFLTAGGAGGLHLWK-YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL  336 (357)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEE-EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTE
T ss_pred             CcCCEEEEEECCCCCcEEEEEeCCCcEEEee-cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeE
Confidence            765432  23333322455555554 44433 22                     233345555    579999999998


Q ss_pred             E-EeCCCCcEEEeecCCceee
Q 032092          125 A-TAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus       125 a-tg~~Dg~i~iWd~~~~~~~  144 (147)
                      + ||+.||.|+|||+.+.+++
T Consensus       337 ~~s~~~d~~i~iw~~~~~~~i  357 (357)
T 3i2n_A          337 CVCSSFDQTVRVLIVTKLNKI  357 (357)
T ss_dssp             EEEEETTSEEEEEEECC----
T ss_pred             EEEecCCCcEEEEECCCcccC
Confidence            8 8999999999999887653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.80  E-value=1.7e-18  Score=132.48  Aligned_cols=139  Identities=11%  Similarity=0.095  Sum_probs=98.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC--CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS--PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~--~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |++|+.||.|++||++...  ...+..  .+...|.+++|+|++++|++|+.||.|++  ||. +++...++.+|.....
T Consensus       134 l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i--~d~-~~~~~~~~~~h~~~v~  208 (383)
T 3ei3_B          134 LFVSSIRGATTLRDFSGSV--IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLL--LGL-DGHEIFKEKLHKAKVT  208 (383)
T ss_dssp             EEEEETTTEEEEEETTSCE--EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEE--EET-TSCEEEEEECSSSCEE
T ss_pred             EEEEeCCCEEEEEECCCCc--eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEE--EEC-CCCEEEEeccCCCcEE
Confidence            5789999999999999642  233332  22356999999999999999999999999  666 4677888888886543


Q ss_pred             E--EeeccceeeeecCCC-cceeeeeee-----eeeeeeece----EEEEEec-CCCeEEEeCCCCcEEEeecCCceeee
Q 032092           79 T--CSVISFTSILAGDAP-KYSSFYKVK-----RLHLFVKSH----VIVLFVQ-IHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        79 ~--~~v~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~----~~~~fsp-dg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .  +....-.++++++.+ .++++. +.     .......+|    ..++|+| ++++|++++.|+.|++||+++++.+.
T Consensus       209 ~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSVDATVKLWD-LRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEE-GGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred             EEEECCCCCCEEEEEeCCCEEEEEe-CCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            3  333332145555545 444443 22     112222233    5799999 99999999999999999998876543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.80  E-value=1.2e-19  Score=140.92  Aligned_cols=107  Identities=8%  Similarity=-0.003  Sum_probs=84.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeE-e--cCCCCcceEEEEEcc--------CCCEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKR-I--NSPLKYQMRCVAAFP--------DQQGFWVGSIEGRVGVHHLDDSQQSKNFT   69 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~-~--~~~~~~~i~~la~sp--------dg~~l~~g~~dg~i~i~~~d~~~~~~~~~   69 (147)
                      ||+|+.|++|+|||+++++..... +  ..+|...|++|+|+|        |+++||+|+.|++|+|  ||++++.....
T Consensus       104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~--Wd~~~~~~~~~  181 (393)
T 4gq1_A          104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII--WRLTDEGPILA  181 (393)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE--EEEETTEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE--EECCCCceeee
Confidence            588999999999999987532111 1  235667899999998        8999999999999999  66666666666


Q ss_pred             EEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCceee
Q 032092           70 FKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        70 ~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      +..|..     ++.++                              +|+|++ ++|++|+.||+|++||+++++..
T Consensus       182 ~~~~~~-----~v~~v------------------------------~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~  222 (393)
T 4gq1_A          182 GYPLSS-----PGISV------------------------------QFRPSNPNQLIVGERNGNIRIFDWTLNLSA  222 (393)
T ss_dssp             EEECSS-----CEEEE------------------------------EEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred             ecCCCC-----CcEEE------------------------------EECCCCCceEEecCCCCEEEEEECCCCccc
Confidence            666664     35555                              999987 68999999999999999887654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.7e-18  Score=130.19  Aligned_cols=141  Identities=16%  Similarity=0.133  Sum_probs=98.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~   78 (147)
                      |++|+.||.|++||+++..++...+. .+..+|.+++|+|++++|++++.||.|++  ||.++++....+. +....  .
T Consensus       190 l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v--~d~~~~~~~~~~~-~~~~~~~~  265 (369)
T 3zwl_B          190 IIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFL--VDVSTLQVLKKYE-TDCPLNTA  265 (369)
T ss_dssp             EEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTCCEEEEEE-CSSCEEEE
T ss_pred             EEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEE--EECCCCceeeeec-CCCCceeE
Confidence            57899999999999998434444443 34567999999999999999999999999  7777777777776 32221  2


Q ss_pred             EEeeccceeeeecCCCc-------------ceeeeeee--eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           79 TCSVISFTSILAGDAPK-------------YSSFYKVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~-------------~~~~~~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      .+......+++++.+..             ...++++.  +....+.+|    ..++|+|++++|++|+.||.|+|||++
T Consensus       266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred             EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence            33333433444444442             11122221  223344444    579999999999999999999999998


Q ss_pred             Cceeee
Q 032092          140 SKQRLK  145 (147)
Q Consensus       140 ~~~~~~  145 (147)
                      ++...+
T Consensus       346 ~~~~~~  351 (369)
T 3zwl_B          346 KSYFDF  351 (369)
T ss_dssp             HHHHTC
T ss_pred             cccchh
Confidence            765443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.80  E-value=2.1e-18  Score=137.98  Aligned_cols=139  Identities=19%  Similarity=0.200  Sum_probs=101.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      |++|+.|+.|++||... + ....+. .+..+|.+++|+||+++|++++.|++|++  ||. +++...++.+|.....  
T Consensus       400 l~~~~~d~~v~~~~~~~-~-~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v~~--w~~-~~~~~~~~~~~~~~v~~~  473 (577)
T 2ymu_A          400 IASASDDKTVKLWNRNG-Q-LLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTVKL--WNR-NGQLLQTLTGHSSSVRGV  473 (577)
T ss_dssp             EEEEETTSEEEEECTTC-C-EEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEE--EET-TSCEEEEEECCSSCEEEE
T ss_pred             EEEEeCCCEEEEEeCCC-C-EEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEEEE--EEC-CCCEEEEEcCCCCCEEEE
Confidence            57899999999999653 3 334443 35568999999999999999999999999  554 4667778888876533  


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+..+...+++++.|..++++..-.+....+.+|    ..++|+|||++||+|+.||.|+|||. +++++.+
T Consensus       474 ~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~  544 (577)
T 2ymu_A          474 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT  544 (577)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred             EEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence            3434443344445555566555333445566666    57999999999999999999999996 5666554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.80  E-value=3.3e-19  Score=138.64  Aligned_cols=145  Identities=12%  Similarity=0.173  Sum_probs=95.0

Q ss_pred             CeEeecCCeEEEEECCC---CccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC-CCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQN---PQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS-QQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~---~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~-~~~~~~~~~~h~~~   76 (147)
                      ||+|+.||+|+|||+.+   +..........+..+|.+++|+|++++|++|+.||+|++|+++.. +++....+.+|...
T Consensus        79 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~  158 (437)
T 3gre_A           79 LITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIR  158 (437)
T ss_dssp             EEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeE
Confidence            58999999999999977   321100111135568999999999999999999999999655422 34444444443211


Q ss_pred             c------------eE----EeeccceeeeecCCC-cceeeee-eeeeeeeeec--e----EEEEEecCCCeEEEeCCCCc
Q 032092           77 S------------ET----CSVISFTSILAGDAP-KYSSFYK-VKRLHLFVKS--H----VIVLFVQIHHTFATAGSDGA  132 (147)
Q Consensus        77 ~------------~~----~~v~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~--~----~~~~fspdg~~latg~~Dg~  132 (147)
                      .            .+    ...+. ..+++|+.+ .+.++.. ..+....+.+  |    ..++|+|++++|++|+.||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~  237 (437)
T 3gre_A          159 KINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI  237 (437)
T ss_dssp             EEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC
T ss_pred             EEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe
Confidence            0            00    00112 234444444 4444432 1222334433  3    57999999999999999999


Q ss_pred             EEEeecCCceeeec
Q 032092          133 FNFWDKDSKQRLKV  146 (147)
Q Consensus       133 i~iWd~~~~~~~~~  146 (147)
                      |++||+++++++++
T Consensus       238 i~iwd~~~~~~~~~  251 (437)
T 3gre_A          238 IDIWDIRFNVLIRS  251 (437)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEEcCCccEEEE
Confidence            99999999888764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.80  E-value=1.4e-18  Score=133.92  Aligned_cols=138  Identities=9%  Similarity=0.139  Sum_probs=97.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC---c
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG---S   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~---~   77 (147)
                      |++|+.||+|++||+++++. ...+. .+..+|.+++|+|++++|++|+.||+|++  ||.++++....+..|...   .
T Consensus       154 l~s~s~d~~i~iwd~~~~~~-~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~v~i--wd~~~~~~~~~~~~~~~~~~~v  229 (420)
T 3vl1_A          154 LISSSQDMQLKIWSVKDGSN-PRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRL--WECGTGTTIHTFNRKENPHDGV  229 (420)
T ss_dssp             EEEEETTSEEEEEETTTCCC-CEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEE--EETTTTEEEEEECBTTBTTCCE
T ss_pred             EEEEeCCCeEEEEeCCCCcC-ceEEc-CCCCcEEEEEEcCCCCEEEEEcCCCcEEE--eECCCCceeEEeecCCCCCCCc
Confidence            58999999999999998864 34443 45678999999999999999999999999  787878888787754321   0


Q ss_pred             e-----------------------EEeeccceeeeecCCC-cceeeee--eeeeeeeeec----eEEEEEecCCC-eEEE
Q 032092           78 E-----------------------TCSVISFTSILAGDAP-KYSSFYK--VKRLHLFVKS----HVIVLFVQIHH-TFAT  126 (147)
Q Consensus        78 ~-----------------------~~~v~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~----~~~~~fspdg~-~lat  126 (147)
                      .                       .+..+.. .+++|+.+ .+.++..  .+.......+    ...++|+|+++ +|++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  308 (420)
T 3vl1_A          230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA  308 (420)
T ss_dssp             EEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred             cEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEE
Confidence            0                       1111222 34444444 4444431  1112222223    35799999998 9999


Q ss_pred             eCCCCcEEEeecCCcee
Q 032092          127 AGSDGAFNFWDKDSKQR  143 (147)
Q Consensus       127 g~~Dg~i~iWd~~~~~~  143 (147)
                      |+.||.|++||+++++.
T Consensus       309 g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          309 GYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             EETTSEEEEEETTCTTS
T ss_pred             EeCCCeEEEEEcCCCcC
Confidence            99999999999988643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=5.9e-19  Score=150.35  Aligned_cols=144  Identities=8%  Similarity=0.027  Sum_probs=99.9

Q ss_pred             CeEeecCCeEEEEECCCCccce-eEec--------CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC-------
Q 032092            1 MVVGTADRNLVVFNLQNPQTEF-KRIN--------SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ-------   64 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~-~~~~--------~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~-------   64 (147)
                      ||+|+.||+|++||+.+++... ..+.        ..+...|.+|+|+|||++||+|+.||+|+||+++....       
T Consensus       450 laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~  529 (902)
T 2oaj_A          450 FITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRP  529 (902)
T ss_dssp             EEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------
T ss_pred             EEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccC
Confidence            5899999999999998874210 0110        13556799999999999999999999999977654310       


Q ss_pred             ------------------------------------cceeEEEeccCCc--eEEeeccceeeeecCCCcceeeeeeeee-
Q 032092           65 ------------------------------------SKNFTFKCHRDGS--ETCSVISFTSILAGDAPKYSSFYKVKRL-  105 (147)
Q Consensus        65 ------------------------------------~~~~~~~~h~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~-  105 (147)
                                                          +.+.++.+|....  .+++.+.  ++++|++++....++++.. 
T Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lwd~~~~~  607 (902)
T 2oaj_A          530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRGPA  607 (902)
T ss_dssp             --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEEETTTTE
T ss_pred             CCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEEECCCCe
Confidence                                                1245667787653  3444444  6667777754333333321 


Q ss_pred             -e-----eeee-ce----EEEEEe-----cCC---CeEEEeCCCCcEEEeec---CCceeeec
Q 032092          106 -H-----LFVK-SH----VIVLFV-----QIH---HTFATAGSDGAFNFWDK---DSKQRLKV  146 (147)
Q Consensus       106 -~-----~~~~-~~----~~~~fs-----pdg---~~latg~~Dg~i~iWd~---~~~~~~~~  146 (147)
                       .     ..+. +|    .+++|+     |||   ++|++|+.|++|++||+   .+++++.+
T Consensus       608 ~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~  670 (902)
T 2oaj_A          608 IIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ  670 (902)
T ss_dssp             EEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred             EEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence             1     1122 66    579999     886   89999999999999999   77776554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.79  E-value=7.6e-19  Score=136.27  Aligned_cols=140  Identities=14%  Similarity=0.160  Sum_probs=96.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEe------cCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcc----eeE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRI------NSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSK----NFT   69 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~------~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~----~~~   69 (147)
                      |++| .||.|++||+++..+....+      ...+...|.+++|+|++ +.|++|+.||+|++  ||.++++.    ...
T Consensus       192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~~  268 (447)
T 3dw8_B          192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL--CDMRASALCDRHSKL  268 (447)
T ss_dssp             EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE--EETTTCSSSCTTCEE
T ss_pred             EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE--EECcCCccccceeeE
Confidence            4677 79999999999544333322      12355679999999998 99999999999999  77776665    677


Q ss_pred             EEeccC------------Cc--eEEeeccceeeeecCCCcceeeeee--eeeeeeeeceE-------------------E
Q 032092           70 FKCHRD------------GS--ETCSVISFTSILAGDAPKYSSFYKV--KRLHLFVKSHV-------------------I  114 (147)
Q Consensus        70 ~~~h~~------------~~--~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------------~  114 (147)
                      +.+|..            ..  ..+..+... ++++++..+++|..-  .+....+.+|.                   .
T Consensus       269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~  347 (447)
T 3dw8_B          269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFE  347 (447)
T ss_dssp             ECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCC
T ss_pred             eccCCCccccccccccCceEEEEEECCCCCE-EEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceE
Confidence            777754            22  233333333 344444444444321  23344555553                   2


Q ss_pred             EEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092          115 VLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus       115 ~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      ++|+|++++|++|+.||.|+|||+++++.+
T Consensus       348 ~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          348 CCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             EEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence            899999999999999999999999988765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.79  E-value=2e-18  Score=132.12  Aligned_cols=136  Identities=15%  Similarity=0.110  Sum_probs=95.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec-CCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC---
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD---   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~---   75 (147)
                      |++|+.||.|+|||+.+++.. ..+. ..+...|.+++|+| ++++|++|+.||.|++  ||.+. .....+..|..   
T Consensus        89 l~s~~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i--wd~~~-~~~~~~~~~~~~~~  164 (383)
T 3ei3_B           89 VAVGSKGGDIILWDYDVQNKT-SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL--RDFSG-SVIQVFAKTDSWDY  164 (383)
T ss_dssp             EEEEEBTSCEEEEETTSTTCE-EEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE--EETTS-CEEEEEECCCCSSC
T ss_pred             EEEEcCCCeEEEEeCCCcccc-eeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE--EECCC-CceEEEeccCCCCC
Confidence            589999999999999987543 3333 24667899999999 6899999999999999  66653 55556655542   


Q ss_pred             Cc--eEEeeccceeeeecCCCcceeeeeeeeeeeeeece----EEEEEecCCC-eEEEeCCCCcEEEeecCC
Q 032092           76 GS--ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH----VIVLFVQIHH-TFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        76 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fspdg~-~latg~~Dg~i~iWd~~~  140 (147)
                      ..  ..+..+...+++++.+..+.++..-.+....+.+|    ..++|+|+++ +|++|+.|+.|++||+++
T Consensus       165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          165 WYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             CeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            11  23333343334444444454444222233444454    5799999998 999999999999999987

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.6e-18  Score=147.79  Aligned_cols=139  Identities=14%  Similarity=0.145  Sum_probs=98.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcce-----------eE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN-----------FT   69 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~-----------~~   69 (147)
                      |++|+.|++|+|||+++++. ...+.  +...|++++|+|+++++++|+.||+|++  ||.++++..           ..
T Consensus        72 L~S~s~D~~v~lWd~~~~~~-~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~l--wd~~~~~~~~~~i~~~~~~~~~  146 (902)
T 2oaj_A           72 LVVINAKDTVYVLSLYSQKV-LTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIV--YDIDRDQLSSFKLDNLQKSSFF  146 (902)
T ss_dssp             EEEEETTCEEEEEETTTCSE-EEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEE--EETTTTEEEEEEECCHHHHHTC
T ss_pred             EEEEECcCeEEEEECCCCcE-EEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEE--EECCCCccccceeccccccccc
Confidence            58999999999999999853 44443  3357999999999999999999999999  666655432           11


Q ss_pred             EEeccCCc--eEEeeccceeeeecCCCcceeeeeee--eeeeeeec----------------------eEEEEEecCCCe
Q 032092           70 FKCHRDGS--ETCSVISFTSILAGDAPKYSSFYKVK--RLHLFVKS----------------------HVIVLFVQIHHT  123 (147)
Q Consensus        70 ~~~h~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~fspdg~~  123 (147)
                      +.+|....  ..+.......+++|++++.. .|+++  +....+.+                      ...++|+|||++
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~  225 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH  225 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence            23454432  23333223456666666555 55443  22222322                      357999999999


Q ss_pred             EEEeCCCCcEEEeecCCceeee
Q 032092          124 FATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus       124 latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      ||||+.||+|+|||+++++++.
T Consensus       226 lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          226 IITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             EEEEETTCCEEEEETTTCCEEE
T ss_pred             EEEEECCCeEEEEECCCCcEEE
Confidence            9999999999999999887754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.79  E-value=4e-18  Score=133.48  Aligned_cols=143  Identities=13%  Similarity=0.195  Sum_probs=101.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc--CCCEEEEEeeCCeEEEEeecCCCCcc------------
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP--DQQGFWVGSIEGRVGVHHLDDSQQSK------------   66 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp--dg~~l~~g~~dg~i~i~~~d~~~~~~------------   66 (147)
                      |++|+.||+|++||+++++. ...+. .+..+|.+++|+|  +++++++|+.||+|++  ||.+++..            
T Consensus       176 l~s~s~dg~i~vwd~~~~~~-~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v--wd~~~~~~~~~~~~~~~~~~  251 (464)
T 3v7d_B          176 LVSGSTDRTVRVWDIKKGCC-THVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGEEHDYPL  251 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEE-EEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEE--EECCCCCCC------CCSSE
T ss_pred             EEEEeCCCCEEEEECCCCcE-EEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEE--eeCCCCcccccccccCCcce
Confidence            58999999999999999863 34443 4567899999984  7789999999999999  55544332            


Q ss_pred             -----------eeEEEeccCCceEEeeccceeeeecCCCcceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCC
Q 032092           67 -----------NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSD  130 (147)
Q Consensus        67 -----------~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~D  130 (147)
                                 ...+.+|...........-.+++++.+..+.++... .+....+.+|    ..++|+|++++|++|+.|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d  331 (464)
T 3v7d_B          252 VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD  331 (464)
T ss_dssp             EESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred             EeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Confidence                       334555655433333444434455555555554421 2333445555    579999999999999999


Q ss_pred             CcEEEeecCCceeeecC
Q 032092          131 GAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       131 g~i~iWd~~~~~~~~~~  147 (147)
                      |.|++||++++++++++
T Consensus       332 g~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          332 TTIRIWDLENGELMYTL  348 (464)
T ss_dssp             SCEEEEETTTTEEEEEE
T ss_pred             CcEEEEECCCCcEEEEE
Confidence            99999999999887653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.79  E-value=1.9e-18  Score=129.59  Aligned_cols=117  Identities=37%  Similarity=0.609  Sum_probs=92.2

Q ss_pred             CeEeecCCeEEEEECCC-CccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCC--C--CcceeEEEecc
Q 032092            1 MVVGTADRNLVVFNLQN-PQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDS--Q--QSKNFTFKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~-~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~--~--~~~~~~~~~h~   74 (147)
                      |++|+.||.|++||+++ ++.+.......+..++++++|+| ++++|++|+.||.|++|+++..  +  .+....+.+|.
T Consensus       163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T 1yfq_A          163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence            57899999999999998 65433444445667899999999 9999999999999999777654  1  26677888875


Q ss_pred             CCc----eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           75 DGS----ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        75 ~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ...    +..++.++                              +|+|++++|++|+.||.|++||++++++++++
T Consensus       243 ~~~~~~~~~~~i~~~------------------------------~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  289 (342)
T 1yfq_A          243 LNLKDTNLAYPVNSI------------------------------EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             CCTTCCSSCCCEEEE------------------------------EECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             ccccccccceeEEEE------------------------------EEcCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence            410    11134444                              99999999999999999999999999888764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.79  E-value=3.1e-18  Score=148.11  Aligned_cols=140  Identities=17%  Similarity=0.227  Sum_probs=105.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET-   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~-   79 (147)
                      ||+|+.||+|++||+.+++. ...+. .|..+|.+++|+|+++++++|+.||+|++  ||..+++.+.++.+|.....+ 
T Consensus       630 l~s~~~d~~i~vw~~~~~~~-~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~v--wd~~~~~~~~~~~~~~~~v~~~  705 (1249)
T 3sfz_A          630 IASCGADKTLQVFKAETGEK-LLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKI--WDSATGKLVHTYDEHSEQVNCC  705 (1249)
T ss_dssp             EEEEETTSCEEEEETTTCCE-EEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEeCCCeEEEEECCCCCE-EEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEE--EECCCCceEEEEcCCCCcEEEE
Confidence            58899999999999999864 44444 46678999999999999999999999999  777788888999988765432 


Q ss_pred             -Eeec-cceeeeecCCCc-ceeeeeee--eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           80 -CSVI-SFTSILAGDAPK-YSSFYKVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        80 -~~v~-~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                       +... ...++++|+.++ +.+|. +.  +....+.+|    ..++|+|++++|++|+.||.|++||+.+++...
T Consensus       706 ~~~~~~~~~~l~sg~~d~~v~vwd-~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~  779 (1249)
T 3sfz_A          706 HFTNKSNHLLLATGSNDFFLKLWD-LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK  779 (1249)
T ss_dssp             EECSSSSCCEEEEEETTSCEEEEE-TTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred             EEecCCCceEEEEEeCCCeEEEEE-CCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccc
Confidence             2221 122344555554 44443 32  233445555    578999999999999999999999998876654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.79  E-value=4.2e-19  Score=135.31  Aligned_cols=136  Identities=11%  Similarity=0.062  Sum_probs=91.3

Q ss_pred             CeEeecCCeEEEEECCCCc-cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCc---ceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQ-TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQS---KNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~-~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~---~~~~~~~h~~~   76 (147)
                      ||+|+.||.|+|||+.+++ ++...+. .|..+|.+++|+|++++|++|+.||+|++  ||..+++   ....+.+|...
T Consensus        26 l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~v--wd~~~~~~~~~~~~~~~~~~~  102 (377)
T 3dwl_C           26 FVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYV--YEKRPDGTWKQTLVLLRLNRA  102 (377)
T ss_dssp             EECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEE--C------CCCCEEECCCCSSC
T ss_pred             EEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEE--EEcCCCCceeeeeEecccCCc
Confidence            5788899999999999873 2233333 45678999999999999999999999999  6666554   45556667654


Q ss_pred             ceE--EeeccceeeeecCCCcceeeeeeee----eeeeeec-e----EEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           77 SET--CSVISFTSILAGDAPKYSSFYKVKR----LHLFVKS-H----VIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        77 ~~~--~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~----~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      ...  +..+.-.+++++.+..+.++.....    ....+.+ |    ..++|+|++++|++|+.|+.|++||++
T Consensus       103 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          103 ATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             EEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence            332  2223333344444444544432111    2334444 4    579999999999999999999999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=5.8e-18  Score=127.95  Aligned_cols=140  Identities=14%  Similarity=0.180  Sum_probs=95.8

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~   77 (147)
                      |++|+.||.|++||+++++. ..... ..+..+|.+++|+|+  +++|++|+.||.|++|+++.........+.+|....
T Consensus        72 l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v  150 (379)
T 3jrp_A           72 LASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  150 (379)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred             EEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence            58999999999999998752 22222 245568999999999  999999999999999444333223445566676543


Q ss_pred             e--EEee-------------ccceeeeecCCCcceeeeee-----eeeeeeeece----EEEEEecC---CCeEEEeCCC
Q 032092           78 E--TCSV-------------ISFTSILAGDAPKYSSFYKV-----KRLHLFVKSH----VIVLFVQI---HHTFATAGSD  130 (147)
Q Consensus        78 ~--~~~v-------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~~~fspd---g~~latg~~D  130 (147)
                      .  .+..             +...+++++.+..++++..-     ......+.+|    ..++|+|+   +++|++|+.|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence            2  2322             23333444444445444321     1223345555    47999999   8999999999


Q ss_pred             CcEEEeecCCc
Q 032092          131 GAFNFWDKDSK  141 (147)
Q Consensus       131 g~i~iWd~~~~  141 (147)
                      |.|+|||++++
T Consensus       231 g~i~iwd~~~~  241 (379)
T 3jrp_A          231 RTCIIWTQDNE  241 (379)
T ss_dssp             SCEEEEEESST
T ss_pred             CEEEEEeCCCC
Confidence            99999999875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.3e-18  Score=139.32  Aligned_cols=141  Identities=11%  Similarity=0.047  Sum_probs=97.0

Q ss_pred             CeEeecCCeEEEEECCCCccc----------eeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC-cceeE
Q 032092            1 MVVGTADRNLVVFNLQNPQTE----------FKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ-SKNFT   69 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~----------~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~-~~~~~   69 (147)
                      ||+|+.||+|+|||+.+++..          ...+ ..+..+|.+++|+|+ +.|++|+.||+|++  ||++++ .+...
T Consensus       228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~-~~lasgs~DgtV~l--WD~~~~~~~~~~  303 (524)
T 2j04_B          228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSP-TTVVCGFKNGFVAE--FDLTDPEVPSFY  303 (524)
T ss_dssp             EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSS-SEEEEEETTSEEEE--EETTBCSSCSEE
T ss_pred             EEEEecCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecCC-CeEEEEeCCCEEEE--EECCCCCCceEE
Confidence            588999999999999876421          1122 235567999999986 48999999999999  666654 34456


Q ss_pred             EEeccCCceEE----eeccceeeeecCCC-cceeeeeee--eeeeeeece------EEEEEecCCCeEEEeCCCCcEEEe
Q 032092           70 FKCHRDGSETC----SVISFTSILAGDAP-KYSSFYKVK--RLHLFVKSH------VIVLFVQIHHTFATAGSDGAFNFW  136 (147)
Q Consensus        70 ~~~h~~~~~~~----~v~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~------~~~~fspdg~~latg~~Dg~i~iW  136 (147)
                      +.+|.......    +.+.-.++++++.| .++++. +.  +....+.+|      .+++|+|+++.|++++.|++|++|
T Consensus       304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD-~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lw  382 (524)
T 2j04_B          304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN-PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV  382 (524)
T ss_dssp             EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC-GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEE
T ss_pred             eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE-CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEE
Confidence            88888654322    22221345555555 454444 32  112223333      368999999999999999999999


Q ss_pred             ecCCceeeec
Q 032092          137 DKDSKQRLKV  146 (147)
Q Consensus       137 d~~~~~~~~~  146 (147)
                      |+++++++++
T Consensus       383 d~~~~~~~~~  392 (524)
T 2j04_B          383 PSRAAFAVHP  392 (524)
T ss_dssp             ETTCTTCCEE
T ss_pred             ECccccccee
Confidence            9998876543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.79  E-value=5e-18  Score=127.65  Aligned_cols=141  Identities=19%  Similarity=0.293  Sum_probs=96.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEE--ccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAA--FPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~--spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-   77 (147)
                      |++|+.||.|++||+++++. ....  .+..+|.+++|  +|++++|++|+.||.|++  ||.++++.+..+..|.... 
T Consensus       101 l~s~~~dg~v~iwd~~~~~~-~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v--wd~~~~~~~~~~~~~~~~~~  175 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQA-IQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF--WDTRSSNPMMVLQLPERCYC  175 (368)
T ss_dssp             EEEEETTSEEEEEETTTTEE-EEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEE--ECSSCSSCSEEEECSSCEEE
T ss_pred             EEEEcCCCcEEEEEcCCCCc-eeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEE--EECCCCcEEEEEecCCCceE
Confidence            57899999999999999853 3322  35568999999  899999999999999999  7777777766666543100 


Q ss_pred             ----------------------------------------e--EEeec---c-ceeeeecCCCcceeeeeee-----eee
Q 032092           78 ----------------------------------------E--TCSVI---S-FTSILAGDAPKYSSFYKVK-----RLH  106 (147)
Q Consensus        78 ----------------------------------------~--~~~v~---~-~~~~~~~~~~~~~~~~~~~-----~~~  106 (147)
                                                              .  .....   . ..+++++.+..+.++. +.     ...
T Consensus       176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~-~~~~~~~~~~  254 (368)
T 3mmy_A          176 ADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY-INPPNPAKDN  254 (368)
T ss_dssp             EEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE-SSCSCHHHHS
T ss_pred             EEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe-cCCCCccccc
Confidence                                                    0  00000   0 0023333333333332 11     112


Q ss_pred             eeee----------------ceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          107 LFVK----------------SHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       107 ~~~~----------------~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ..+.                ....++|+|++++|++|+.||.|++||+++++++.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence            2222                2456899999999999999999999999999887754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.78  E-value=3.4e-18  Score=130.39  Aligned_cols=143  Identities=9%  Similarity=0.092  Sum_probs=91.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec--------------CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN--------------SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~--------------~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      |++|+.||.|++||+++++.+...+.              ..+..+|.+++|+|++++|++|+.||.|++  ||.++++.
T Consensus       202 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v--wd~~~~~~  279 (408)
T 4a11_B          202 LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL--WNSSNGEN  279 (408)
T ss_dssp             EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTCCB
T ss_pred             EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE--EECCCCcc
Confidence            47899999999999998753333221              234567999999999999999999999999  66666555


Q ss_pred             eeEEEeccCC----c--eEEeec-cceeeeecCCCcceeeee-eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEE
Q 032092           67 NFTFKCHRDG----S--ETCSVI-SFTSILAGDAPKYSSFYK-VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFN  134 (147)
Q Consensus        67 ~~~~~~h~~~----~--~~~~v~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~  134 (147)
                      ...+..+...    .  ...... ...++.++.+..+.++.. ..+....+.+|    ..++|+|++++|++|+.||.|+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  359 (408)
T 4a11_B          280 TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL  359 (408)
T ss_dssp             CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence            4433322211    0  011111 112233344444444431 11233445555    5799999999999999999999


Q ss_pred             EeecCCceeee
Q 032092          135 FWDKDSKQRLK  145 (147)
Q Consensus       135 iWd~~~~~~~~  145 (147)
                      +||+++++.+.
T Consensus       360 iw~~~~~~~~~  370 (408)
T 4a11_B          360 AWVPSLYEPVP  370 (408)
T ss_dssp             EEEECC-----
T ss_pred             EEeCCCCCccC
Confidence            99999887654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.78  E-value=2.6e-18  Score=131.36  Aligned_cols=143  Identities=16%  Similarity=0.187  Sum_probs=101.7

Q ss_pred             CeEeecCCeEEEEECCC------Ccccee-----Eec------CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092            1 MVVGTADRNLVVFNLQN------PQTEFK-----RIN------SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~------~~~~~~-----~~~------~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~   63 (147)
                      |++|+.||.|++||+++      ++.. .     .+.      ..+...|.+++|+|++ .|++|+.||.|++  ||.++
T Consensus       141 l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i--~d~~~  216 (397)
T 1sq9_A          141 LVATDVKGTTYIWKFHPFADESNSLTL-NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI--SELST  216 (397)
T ss_dssp             EEEEETTSCEEEEEEESSSSHHHHTTT-CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE--EETTT
T ss_pred             EEEEeCCCcEEEEeCCcccccccccee-eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE--EECCC
Confidence            57899999999999998      5432 2     332      2345679999999999 9999999999999  78777


Q ss_pred             CcceeEEEe---c---cCCce--EEeeccceeeeecCC---Ccceeeee-eeeeeeeeec-------------e----EE
Q 032092           64 QSKNFTFKC---H---RDGSE--TCSVISFTSILAGDA---PKYSSFYK-VKRLHLFVKS-------------H----VI  114 (147)
Q Consensus        64 ~~~~~~~~~---h---~~~~~--~~~v~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~-------------~----~~  114 (147)
                      ++.+..+..   |   .....  .+..+...+++++.+   ..+.++.. ..+....+.+             |    ..
T Consensus       217 ~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  296 (397)
T 1sq9_A          217 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS  296 (397)
T ss_dssp             TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE
T ss_pred             CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEE
Confidence            888888888   7   54432  333334333444444   34444331 1122333444             4    57


Q ss_pred             EEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          115 VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       115 ~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ++|+|++++|++|+.||.|++||+++++++.++
T Consensus       297 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          297 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence            999999999999999999999999998887653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.78  E-value=1.1e-18  Score=131.30  Aligned_cols=107  Identities=16%  Similarity=0.189  Sum_probs=84.1

Q ss_pred             CeEeecCCeEEEEECCCCccce-eEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEF-KRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~-~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      |++|+.||.|+|||+.+..... ..+ ..+..+|.+++|+|++++|++|+.||.|++  ||..+++... +..|..    
T Consensus        57 l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i--wd~~~~~~~~-~~~~~~----  128 (368)
T 3mmy_A           57 LIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDDGSKVFTASCDKTAKM--WDLSSNQAIQ-IAQHDA----  128 (368)
T ss_dssp             EEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTTEEEE-EEECSS----
T ss_pred             EEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcCCCEEEEEcCCCcEEE--EEcCCCCcee-eccccC----
Confidence            5899999999999999833333 333 245678999999999999999999999999  6666555443 455654    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEE--ecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLF--VQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--spdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                       ++.++                              +|  +|++++|++|+.||.|++||+++++.+.+
T Consensus       129 -~v~~~------------------------------~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A          129 -PVKTI------------------------------HWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             -CEEEE------------------------------EEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             -ceEEE------------------------------EEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence             35555                              88  88999999999999999999988876553

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.78  E-value=7.7e-18  Score=128.76  Aligned_cols=139  Identities=12%  Similarity=0.092  Sum_probs=99.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC--CC---CcceEEEEEccCCCEEEEEeeC---CeEEEEeecCCCCcceeEEEe
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS--PL---KYQMRCVAAFPDQQGFWVGSIE---GRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~--~~---~~~i~~la~spdg~~l~~g~~d---g~i~i~~~d~~~~~~~~~~~~   72 (147)
                      |++|+.||.|++||+++++ +...+..  .+   ..+|.+++|+|++++|++|+.|   |.|++  ||.++++.+..+.+
T Consensus       200 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i--~d~~~~~~~~~~~~  276 (397)
T 1sq9_A          200 IATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL--YETEFGERIGSLSV  276 (397)
T ss_dssp             EEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE--EETTTCCEEEEECB
T ss_pred             EEEEeCCCcEEEEECCCCc-eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEE--EECCCCcccceecc
Confidence            5789999999999999875 3444442  04   5679999999999999999999   99999  78777888888887


Q ss_pred             -------------ccCCce--EEeeccceeeeecCCCcceeeeee-eeeeeeee------c-------------------
Q 032092           73 -------------HRDGSE--TCSVISFTSILAGDAPKYSSFYKV-KRLHLFVK------S-------------------  111 (147)
Q Consensus        73 -------------h~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~-------------------  111 (147)
                                   |.....  .+..+.-.+++++.+..+.+|... .+....+.      +                   
T Consensus       277 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  356 (397)
T 1sq9_A          277 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  356 (397)
T ss_dssp             C--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCc
Confidence                         766432  333334334444544445544311 12222333      3                   


Q ss_pred             eEEEEEecCC----------CeEEEeCCCCcEEEeecCCce
Q 032092          112 HVIVLFVQIH----------HTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus       112 ~~~~~fspdg----------~~latg~~Dg~i~iWd~~~~~  142 (147)
                      ...++|+|+|          ++|++|+.||.|++||+++++
T Consensus       357 v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          357 VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             eeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            3579999998          799999999999999998764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.78  E-value=1.3e-18  Score=129.17  Aligned_cols=109  Identities=17%  Similarity=0.218  Sum_probs=82.8

Q ss_pred             CeEeecCCeEEEEECCCCccc---eeEecCCCCcceEEEEEcc--CCCEEEEEeeCCeEEEEeecCCCC-------ccee
Q 032092            1 MVVGTADRNLVVFNLQNPQTE---FKRINSPLKYQMRCVAAFP--DQQGFWVGSIEGRVGVHHLDDSQQ-------SKNF   68 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~---~~~~~~~~~~~i~~la~sp--dg~~l~~g~~dg~i~i~~~d~~~~-------~~~~   68 (147)
                      |++|+.||.|++||+.++...   ...+. .+..+|.+++|+|  |+++|++|+.||+|++|+++....       +...
T Consensus        26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~  104 (351)
T 3f3f_A           26 VATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLC  104 (351)
T ss_dssp             EEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEE
T ss_pred             EEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceee
Confidence            589999999999999976432   22222 4567899999999  699999999999999955543211       2344


Q ss_pred             EEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC--CCeEEEeCCCCcEEEeecCCceeee
Q 032092           69 TFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI--HHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        69 ~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd--g~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .+.+|..     .+.++                              +|+|+  +++|++|+.||.|++||+++++.+.
T Consensus       105 ~~~~~~~-----~v~~~------------------------------~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A          105 TLNDSKG-----SLYSV------------------------------KFAPAHLGLKLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             EECCCSS-----CEEEE------------------------------EECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred             eecccCC-----ceeEE------------------------------EEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence            5555543     34454                              99999  9999999999999999998876554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.78  E-value=1.5e-17  Score=123.83  Aligned_cols=140  Identities=14%  Similarity=0.180  Sum_probs=99.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~   78 (147)
                      |++|+.||.|++||+++++. ...+. .+..++.+++|+|+++.|++++.||.|++  ||.++++....+. |....  .
T Consensus       156 l~~~~~dg~v~~~d~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~--~d~~~~~~~~~~~-~~~~v~~~  230 (337)
T 1gxr_A          156 CFSCCSDGNIAVWDLHNQTL-VRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRS--WDLREGRQLQQHD-FTSQIFSL  230 (337)
T ss_dssp             EEEEETTSCEEEEETTTTEE-EEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTTEEEEEEE-CSSCEEEE
T ss_pred             EEEEeCCCcEEEEeCCCCce-eeeee-cccCceEEEEECCCCCEEEEEecCCcEEE--EECCCCceEeeec-CCCceEEE
Confidence            57899999999999998753 44443 35567999999999999999999999999  7777776666554 33322  2


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .+..+...+++++.+..+..+.........+.+|    ..++|+|++++|++++.||.|++||+++++.+.
T Consensus       231 ~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence            2333333334444444455444221222233333    579999999999999999999999999887664

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.78  E-value=2.7e-17  Score=122.46  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=99.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      |++|+.||.|++||+++++.........+..++.+++|+|+++++++++.||.|++  ||.++++....+.+|.....  
T Consensus       112 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~--~d~~~~~~~~~~~~~~~~i~~~  189 (337)
T 1gxr_A          112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV--WDLHNQTLVRQFQGHTDGASCI  189 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTTEEEEEECCCSSCEEEE
T ss_pred             EEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEE--EeCCCCceeeeeecccCceEEE
Confidence            57889999999999998753211112234567999999999999999999999999  77777888888888876433  


Q ss_pred             EEeeccceeeeecCCCcceeeeee-eeeeeee---eceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKV-KRLHLFV---KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      .+..+.-.+++++.+..+..+... .+....+   .....++|+|++++|++++.|+.|++||+++++..
T Consensus       190 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~  259 (337)
T 1gxr_A          190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred             EECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE
Confidence            233333333444544444444311 1111111   23357899999999999999999999999887653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.2e-17  Score=123.43  Aligned_cols=137  Identities=13%  Similarity=0.131  Sum_probs=97.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET-   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~-   79 (147)
                      |++|+.||.|++||..+.   ...+...+..++.+++|+|++. +++|+.||.|++  ||.++++.+..+.+|...... 
T Consensus       158 l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i--~d~~~~~~~~~~~~~~~~i~~~  231 (313)
T 3odt_A          158 FLTASADKTIKLWQNDKV---IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKL--VDMHTGDVLRTYEGHESFVYCI  231 (313)
T ss_dssp             EEEEETTSCEEEEETTEE---EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEE--EETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEECCCCEEEEecCce---EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEE--EECCchhhhhhhhcCCceEEEE
Confidence            578999999999994432   3344444566899999999998 999999999999  788888888899888765332 


Q ss_pred             -EeeccceeeeecCCCcceeeee-eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           80 -CSVISFTSILAGDAPKYSSFYK-VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        80 -~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                       +..+. .+++++.+..+.++.. ..+....+..|    ..++|+|+++ +++|+.||.|++||+++++.+.
T Consensus       232 ~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          232 KLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             EECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             EEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence             33333 2344454444544441 11223334333    5799999998 6678899999999999877654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.77  E-value=4.3e-18  Score=128.77  Aligned_cols=146  Identities=19%  Similarity=0.119  Sum_probs=98.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCc-ceeEE-EeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQS-KNFTF-KCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~-~~~~~-~~h~~~~~   78 (147)
                      |++|+.||.|++||+++++.........+..+|.+++|+|++++|++|+.||.|++|+++..... ....+ .+|.....
T Consensus        67 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~  146 (372)
T 1k8k_C           67 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  146 (372)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence            57899999999999988752111111245567999999999999999999999999666553211 12222 23443322


Q ss_pred             --EEeeccceeeeecCCCcceeeee-------------------eeeeeeeeece----EEEEEecCCCeEEEeCCCCcE
Q 032092           79 --TCSVISFTSILAGDAPKYSSFYK-------------------VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAF  133 (147)
Q Consensus        79 --~~~v~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i  133 (147)
                        .+..+...+++++.+..+.++..                   ..+....+.+|    ..++|+|++++|++|+.||.|
T Consensus       147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  226 (372)
T 1k8k_C          147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV  226 (372)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence              23333333444455555555441                   11233344444    579999999999999999999


Q ss_pred             EEeecCCceeeec
Q 032092          134 NFWDKDSKQRLKV  146 (147)
Q Consensus       134 ~iWd~~~~~~~~~  146 (147)
                      ++||+++++++.+
T Consensus       227 ~i~d~~~~~~~~~  239 (372)
T 1k8k_C          227 CLADADKKMAVAT  239 (372)
T ss_dssp             EEEEGGGTTEEEE
T ss_pred             EEEECCCCceeEE
Confidence            9999998887764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.77  E-value=1.2e-18  Score=131.08  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=86.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEE---EeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTF---KCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~---~~h~~~   76 (147)
                      |++|+.||.|++||+.+++. ...+. .+..+|.+++|+| ++++|++|+.||+|++  ||.++++....+   .+|.. 
T Consensus        88 l~~~~~dg~i~v~d~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~-  162 (366)
T 3k26_A           88 LAVAGSRGIIRIINPITMQC-IKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRL--WNIQTDTLVAIFGGVEGHRD-  162 (366)
T ss_dssp             EEEEETTCEEEEECTTTCCE-EEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEE--EETTTTEEEEEECSTTSCSS-
T ss_pred             EEEecCCCEEEEEEchhceE-eeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEE--EEeecCeEEEEecccccccC-
Confidence            58899999999999998864 44444 3566899999999 8999999999999999  777777776666   34543 


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                          .+.++                              +|+|++++|++|+.||.|++||+++++.+
T Consensus       163 ----~v~~~------------------------------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  196 (366)
T 3k26_A          163 ----EVLSA------------------------------DYDLLGEKIMSCGMDHSLKLWRINSKRMM  196 (366)
T ss_dssp             ----CEEEE------------------------------EECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred             ----ceeEE------------------------------EECCCCCEEEEecCCCCEEEEECCCCccc
Confidence                35555                              99999999999999999999999987654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=6.2e-18  Score=128.40  Aligned_cols=107  Identities=11%  Similarity=0.140  Sum_probs=81.9

Q ss_pred             CeEeecCCeEEEEECC---------CCccceeEecCCCCcceEEEEEcc--CCCEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092            1 MVVGTADRNLVVFNLQ---------NPQTEFKRINSPLKYQMRCVAAFP--DQQGFWVGSIEGRVGVHHLDDSQQSKNFT   69 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~---------~~~~~~~~~~~~~~~~i~~la~sp--dg~~l~~g~~dg~i~i~~~d~~~~~~~~~   69 (147)
                      +++|+.|++|++|+..         +++ ........+..+|.+++|+|  ++++|++|+.||+|++  ||.++++....
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~--wd~~~~~~~~~  164 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNK-VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF--QSYEDDSQYIV  164 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCC-EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE--EESSSSCEEEE
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcc-eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE--EECCCCcEEEE
Confidence            5789999999999766         332 12333334446799999999  9999999999999999  77776666544


Q ss_pred             EEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           70 FKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        70 ~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      +..+...    .+.++                              +|+|+|++||+|+.||.|+|||+++++.+
T Consensus       165 ~~~~~~~----~i~~~------------------------------~~~pdg~~lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          165 HSAKSDV----EYSSG------------------------------VLHKDSLLLALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             ECCCSSC----CCCEE------------------------------EECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred             EecCCCC----ceEEE------------------------------EECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence            4333221    25555                              99999999999999999999999998765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.77  E-value=2.3e-17  Score=127.68  Aligned_cols=141  Identities=11%  Similarity=0.124  Sum_probs=100.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      |++|+.||.|++||++........+. .+..+|.+++|+|++++|++|+.||.|++  ||.++++....+..|.....  
T Consensus       189 l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~i--wd~~~~~~~~~~~~~~~~v~~~  265 (401)
T 4aez_A          189 LSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQI--WDARSSIPKFTKTNHNAAVKAV  265 (401)
T ss_dssp             EEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTCSSEEEEECCCSSCCCEE
T ss_pred             EEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcCCCCEEEEEeCCCeEEE--ccCCCCCccEEecCCcceEEEE
Confidence            57899999999999996544444443 35668999999999999999999999999  78777888888887776432  


Q ss_pred             EEeeccceeeeec--CCCcceeeeeee--eeeeee---eceEEEEEecCCCeEEE--eCCCCcEEEeecCCceee
Q 032092           79 TCSVISFTSILAG--DAPKYSSFYKVK--RLHLFV---KSHVIVLFVQIHHTFAT--AGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        79 ~~~v~~~~~~~~~--~~~~~~~~~~~~--~~~~~~---~~~~~~~fspdg~~lat--g~~Dg~i~iWd~~~~~~~  144 (147)
                      .+....-.++++|  +.++...++++.  +....+   .....++|+|+++.|++  |+.||.|++||+.+++..
T Consensus       266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~  340 (401)
T 4aez_A          266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT  340 (401)
T ss_dssp             EECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred             EECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence            3333333344443  345433333322  222222   23467999999999998  558999999999886544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.77  E-value=1e-17  Score=129.45  Aligned_cols=140  Identities=14%  Similarity=0.150  Sum_probs=100.5

Q ss_pred             CeEeecCCeEEEEECCCCc------cceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEE--E
Q 032092            1 MVVGTADRNLVVFNLQNPQ------TEFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTF--K   71 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~------~~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~--~   71 (147)
                      |++|+.||+|+|||+.+++      .+...+. .|...|.+++|+|++ +.|++|+.||+|++  ||.++++...++  .
T Consensus        97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~~  173 (402)
T 2aq5_A           97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNVILV--WDVGTGAAVLTLGPD  173 (402)
T ss_dssp             EEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSCEEE--EETTTTEEEEEECTT
T ss_pred             EEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCEEEE--EECCCCCccEEEecC
Confidence            5899999999999999873      2333343 455689999999998 69999999999999  777778888888  6


Q ss_pred             eccCCce--EEeeccceeeeecCCCcceeeeee-eeeeeee-ece-----EEEEEecCCCeEEEe---CCCCcEEEeecC
Q 032092           72 CHRDGSE--TCSVISFTSILAGDAPKYSSFYKV-KRLHLFV-KSH-----VIVLFVQIHHTFATA---GSDGAFNFWDKD  139 (147)
Q Consensus        72 ~h~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~-----~~~~fspdg~~latg---~~Dg~i~iWd~~  139 (147)
                      +|.....  .+..+.-.+++++.|..++++..- .+....+ .+|     ..++|+|++++|++|   +.|+.|++||++
T Consensus       174 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~  253 (402)
T 2aq5_A          174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK  253 (402)
T ss_dssp             TCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred             CCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence            6765432  333333334444555555554421 1223333 344     468999999999999   899999999998


Q ss_pred             Ccee
Q 032092          140 SKQR  143 (147)
Q Consensus       140 ~~~~  143 (147)
                      +++.
T Consensus       254 ~~~~  257 (402)
T 2aq5_A          254 HLEE  257 (402)
T ss_dssp             BCSS
T ss_pred             cccC
Confidence            7643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.76  E-value=4.1e-18  Score=132.73  Aligned_cols=100  Identities=18%  Similarity=0.275  Sum_probs=83.0

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe--eCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS--IEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~--~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +|+.|++|++||+++++. ...+..  ..++.++.|+|+++.+++++  .||+|+|  ||..+++.+.++.+|..     
T Consensus       296 ~gs~D~~I~iwd~~t~~~-~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~i--wd~~~~~~v~~l~gH~~-----  365 (420)
T 4gga_A          296 GGTSDRHIRIWNVCSGAC-LSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVI--WKYPTMAKVAELKGHTS-----  365 (420)
T ss_dssp             ECTTTCEEEEEETTTTEE-EEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEE--EETTTCCEEEEECCCSS-----
T ss_pred             eecCCCEEEEEeCCcccc-ceeecc--ccceeeeeecCCCCeEEEEEecCCCEEEE--EECCCCcEEEEEcCCCC-----
Confidence            456899999999999864 344432  24689999999999988765  7999999  77788899999999976     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      .|.++                              +|+|||++||||+.|++|+|||+.+..
T Consensus       366 ~V~~l------------------------------~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          366 RVLSL------------------------------TMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             CEEEE------------------------------EECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             CEEEE------------------------------EEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            46666                              999999999999999999999987643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.2e-17  Score=127.86  Aligned_cols=137  Identities=11%  Similarity=0.060  Sum_probs=101.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      +++|+.||.|++||+++++. ...+. .+..+|.+++|+|++++|++++.||.|++  ||.++++....+.+|.....  
T Consensus       220 ~~~~~~~g~i~~~d~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i--~d~~~~~~~~~~~~~~~~i~~~  295 (425)
T 1r5m_A          220 FVIPGPKGAIFVYQITEKTP-TGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRI--WHGGNGNSQNCFYGHSQSIVSA  295 (425)
T ss_dssp             EEEECGGGCEEEEETTCSSC-SEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEE--ECSSSBSCSEEECCCSSCEEEE
T ss_pred             EEEEcCCCeEEEEEcCCCce-eeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEE--EECCCCccceEecCCCccEEEE
Confidence            47889999999999998753 34443 45568999999999999999999999999  78777788888877766432  


Q ss_pred             EEeeccceeeeecCCCcceeeee-eeeeeeeeec----eEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           79 TCSVISFTSILAGDAPKYSSFYK-VKRLHLFVKS----HVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      .+.... .+++++.+..+.++.. ..+....+.+    ...++|+|++++|++|+.||.|++||+++++
T Consensus       296 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          296 SWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            333334 3344454444444441 1122333333    3578999999999999999999999998776

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.2e-17  Score=131.22  Aligned_cols=141  Identities=13%  Similarity=0.073  Sum_probs=99.4

Q ss_pred             eEeecCCeEEEEECC--CCccceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcce----eEEEecc
Q 032092            2 VVGTADRNLVVFNLQ--NPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN----FTFKCHR   74 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~--~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~----~~~~~h~   74 (147)
                      ++|+.||.|+|||+.  +++. ...+.. .+...|.+++|+|++++|++|+.||.|++  |+..+++..    ..+.+|.
T Consensus       119 ~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~--~~~~~~~~~~~~~~~~~~h~  195 (450)
T 2vdu_B          119 ACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS--IDINSIPEEKFTQEPILGHV  195 (450)
T ss_dssp             EEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE--EETTSCCCSSCCCCCSEECS
T ss_pred             EEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE--EecCCcccccccceeeeccc
Confidence            788999999999999  6643 344321 23456999999999999999999999998  666554433    2667787


Q ss_pred             CCce--EEeec---cceeeeecCCCcceeeeeee-eeeee-eece----EEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           75 DGSE--TCSVI---SFTSILAGDAPKYSSFYKVK-RLHLF-VKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        75 ~~~~--~~~v~---~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      ....  .+..+   ...+++++.|..+++|..-. +.... +.+|    ..++|+ ++++|++|+.|+.|++||++++++
T Consensus       196 ~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          196 SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN  274 (450)
T ss_dssp             SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred             CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence            6432  34444   33344555555555544211 22222 3455    579999 999999999999999999999987


Q ss_pred             eec
Q 032092          144 LKV  146 (147)
Q Consensus       144 ~~~  146 (147)
                      +++
T Consensus       275 ~~~  277 (450)
T 2vdu_B          275 LST  277 (450)
T ss_dssp             EEE
T ss_pred             eee
Confidence            764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.76  E-value=5e-18  Score=130.34  Aligned_cols=106  Identities=12%  Similarity=0.164  Sum_probs=89.5

Q ss_pred             CeEeecCC---eEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADR---NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg---~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      |++|+.|+   .|++||+++++++...+...+..+|.+++|+| ++++|++|+.||+|++  ||.++++.+.++.+|.. 
T Consensus       230 l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~--wd~~~~~~~~~~~~~~~-  306 (416)
T 2pm9_A          230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL--WNPESAEQLSQFPARGN-  306 (416)
T ss_dssp             EEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE--ECSSSCCEEEEEECSSS-
T ss_pred             EEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE--eeCCCCccceeecCCCC-
Confidence            47888898   99999999875554444314556899999999 8999999999999999  78888888888888875 


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCcee
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~  143 (147)
                          .+.++                              +|+|++ ++|++++.||.|+|||+++.+.
T Consensus       307 ----~v~~~------------------------------~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          307 ----WCFKT------------------------------KFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             ----CCCCE------------------------------EECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             ----ceEEE------------------------------EECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence                46677                              999999 8999999999999999987653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.76  E-value=5.8e-18  Score=135.70  Aligned_cols=135  Identities=13%  Similarity=0.245  Sum_probs=97.7

Q ss_pred             CeEeec-CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe-ccCCce
Q 032092            1 MVVGTA-DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC-HRDGSE   78 (147)
Q Consensus         1 l~~gs~-dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~-h~~~~~   78 (147)
                      |++|+. ||.|++||+.+++.... ....+..+|.+++|+|++++|++|+.||.|++  ||..+++.+..+.+ |.....
T Consensus       459 l~~~~~~d~~i~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i--w~~~~~~~~~~~~~~h~~~v~  535 (615)
T 1pgu_A          459 VAVGLEEGNTIQVFKLSDLEVSFD-LKTPLRAKPSYISISPSETYIAAGDVMGKILL--YDLQSREVKTSRWAFRTSKIN  535 (615)
T ss_dssp             EEEEETTTSCEEEEETTEEEEEEE-CSSCCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTTEEEECCSCCCSSCEE
T ss_pred             EEEeecCCCeEEEEECCCcccccc-ccCCccCceEEEEECCCCCEEEEcCCCCeEEE--eeCCCCcceeEeecCCCCcee
Confidence            477888 99999999998643112 22245568999999999999999999999999  77777777777776 766533


Q ss_pred             --EEee----------ccceeeeecCCC-cceeeeeee--eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           79 --TCSV----------ISFTSILAGDAP-KYSSFYKVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        79 --~~~v----------~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                        .+..          +.- .+++++++ .+++|....  +....+.+|    ..++|+|+++ |++++.||.|++||++
T Consensus       536 ~~~~sp~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          536 AISWKPAEKGANEEEIEED-LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             EEEECCCC------CCSCC-EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             EEEEcCccccccccccCCC-EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence              3434          333 44444444 455444222  334455555    5799999999 9999999999999987


Q ss_pred             C
Q 032092          140 S  140 (147)
Q Consensus       140 ~  140 (147)
                      +
T Consensus       614 ~  614 (615)
T 1pgu_A          614 L  614 (615)
T ss_dssp             -
T ss_pred             c
Confidence            5

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.76  E-value=7.2e-17  Score=121.31  Aligned_cols=140  Identities=11%  Similarity=0.018  Sum_probs=98.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~   78 (147)
                      |++|+.||.|++||+.+++. ...+. .+..+|.+++|+|++++|++++.||.|++  ||..+++....+. |....  .
T Consensus        47 l~~~~~dg~i~vwd~~~~~~-~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~-~~~~v~~~  121 (369)
T 3zwl_B           47 LFSCSKDSSASVWYSLNGER-LGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKL--WDVSNGQCVATWK-SPVPVKRV  121 (369)
T ss_dssp             EEEEESSSCEEEEETTTCCE-EEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEE--EETTTCCEEEEEE-CSSCEEEE
T ss_pred             EEEEeCCCEEEEEeCCCchh-hhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEE--EECCCCcEEEEee-cCCCeEEE
Confidence            57899999999999999863 44443 45668999999999999999999999999  7777777777776 44332  2


Q ss_pred             EEeeccceeeeecCC-----Ccceeeeeeee-------------eeeeee------ceEEEEEecCCCeEEEeCCCCcEE
Q 032092           79 TCSVISFTSILAGDA-----PKYSSFYKVKR-------------LHLFVK------SHVIVLFVQIHHTFATAGSDGAFN  134 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~-----~~~~~~~~~~~-------------~~~~~~------~~~~~~fspdg~~latg~~Dg~i~  134 (147)
                      .+..+...+++++.+     ..+.++. +..             ....+.      ....++|+|++++|++|+.||.|+
T Consensus       122 ~~~~~~~~l~~~~~~~~~~~g~i~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  200 (369)
T 3zwl_B          122 EFSPCGNYFLAILDNVMKNPGSINIYE-IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS  200 (369)
T ss_dssp             EECTTSSEEEEEECCBTTBCCEEEEEE-EEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             EEccCCCEEEEecCCccCCCCEEEEEE-ecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEE
Confidence            333334334444444     3333332 211             111122      345789999999999999999999


Q ss_pred             EeecCC-ceeeec
Q 032092          135 FWDKDS-KQRLKV  146 (147)
Q Consensus       135 iWd~~~-~~~~~~  146 (147)
                      +||+++ ++.+.+
T Consensus       201 i~d~~~~~~~~~~  213 (369)
T 3zwl_B          201 KYDVSNNYEYVDS  213 (369)
T ss_dssp             EEETTTTTEEEEE
T ss_pred             EEECCCCcEeEEE
Confidence            999998 565543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.76  E-value=4.2e-17  Score=120.44  Aligned_cols=137  Identities=13%  Similarity=0.092  Sum_probs=96.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC-CCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD-SQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~-~~~~~~~~~~~h~~~~~~   79 (147)
                      |++|+.||.|++||+.+++. ...+. .+..+|.+++|+|++++|++|+.||.|++|++.. ...+....+.+|......
T Consensus        32 l~s~~~dg~v~vw~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~  109 (313)
T 3odt_A           32 VASVSRDGTVRLWSKDDQWL-GTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCS  109 (313)
T ss_dssp             EEEEETTSEEEEEEESSSEE-EEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEE
T ss_pred             EEEEEcCCcEEEEECCCCEE-EEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEE
Confidence            58999999999999988753 23333 3456899999999999999999999999954432 234556777778765443


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeece----EEEEEec-CCCeEEEeCCCCcEEEeecCC
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH----VIVLFVQ-IHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fsp-dg~~latg~~Dg~i~iWd~~~  140 (147)
                      .....-.+++++.+..+.++. ..+....+.+|    ..++|+| ++++|++++.||.|++||..+
T Consensus       110 ~~~~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  174 (313)
T 3odt_A          110 LSFQDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK  174 (313)
T ss_dssp             EEEETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE
T ss_pred             EEecCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc
Confidence            334444344555555555554 33334444444    4688988 889999999999999999543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.76  E-value=8.2e-18  Score=124.72  Aligned_cols=101  Identities=18%  Similarity=0.238  Sum_probs=83.4

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe--eCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS--IEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~--~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      ++|+.+++|++||.+..+.. ....  +..++..++|+|+++.+++++  .||+|+|  ||.++++.+.++++|..    
T Consensus       215 ~~~~~~~~i~lwd~~~~~~~-~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~i--wd~~~~~~~~~l~gH~~----  285 (318)
T 4ggc_A          215 GGGTSDRHIRIWNVCSGACL-SAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVI--WKYPTMAKVAELKGHTS----  285 (318)
T ss_dssp             EECTTTCEEEEEETTTCCEE-EEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEE--EETTTCCEEEEECCCSS----
T ss_pred             EecCCCCEEEEEeccccccc-cccc--ceeeeeeeeecccccceEEEEEcCCCEEEE--EECCCCcEEEEEcCCCC----
Confidence            46788999999999987542 2222  335689999999999887654  7999999  78888899999999976    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                       .|.++                              +|+|||++|||||.||+|+|||+.+..
T Consensus       286 -~V~~l------------------------------~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          286 -RVLSL------------------------------TMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             -CEEEE------------------------------EECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             -CEEEE------------------------------EEcCCCCEEEEEecCCeEEEEECCCCC
Confidence             46676                              999999999999999999999997654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.76  E-value=2.2e-17  Score=136.92  Aligned_cols=140  Identities=16%  Similarity=0.153  Sum_probs=103.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE--   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~--   78 (147)
                      ||+|+.||.|+|||+++++. ...+. .+..+|++++|+|++++|++|+.||.|++  ||..+++...++.+|.....  
T Consensus        28 la~~~~~g~v~iwd~~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v--w~~~~~~~~~~~~~~~~~v~~~  103 (814)
T 3mkq_A           28 VLTTLYSGRVEIWNYETQVE-VRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRV--FNYNTGEKVVDFEAHPDYIRSI  103 (814)
T ss_dssp             EEEEETTSEEEEEETTTTEE-EEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEE--EETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCce-EEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEE--EECCCCcEEEEEecCCCCEEEE
Confidence            57899999999999999854 44444 45678999999999999999999999999  67777888888988876533  


Q ss_pred             EEeeccceeeeecCCCcceeeeee--eeeeeeeece----EEEEEec-CCCeEEEeCCCCcEEEeecCCceee
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKV--KRLHLFVKSH----VIVLFVQ-IHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~fsp-dg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      .+..+.-.+++++.+..+.++..-  ......+.+|    ..++|+| +++.|++|+.||.|++||+.+++..
T Consensus       104 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~  176 (814)
T 3mkq_A          104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (814)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred             EEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence            333333333344444444444311  1233445554    5789999 8899999999999999999876544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.75  E-value=5.2e-18  Score=131.87  Aligned_cols=108  Identities=8%  Similarity=0.095  Sum_probs=86.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCC-CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSP-LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~-~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~~~   78 (147)
                      |++|+.||.|++||+++++. ...+..+ +..+|++++|+|++++|++|+.||+|++  ||.++++.+.++. .|..   
T Consensus       185 l~~~~~d~~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~~~~~---  258 (437)
T 3gre_A          185 LVALTNLSRVIIFDIRTLER-LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDI--WDIRFNVLIRSWSFGDHA---  258 (437)
T ss_dssp             EEEEETTSEEEEEETTTCCE-EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEE--EETTTTEEEEEEBCTTCE---
T ss_pred             EEEEeCCCeEEEEeCCCCee-eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEE--EEcCCccEEEEEecCCCC---
Confidence            57899999999999999864 4555432 5568999999999999999999999999  7777777777665 3432   


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEE----ecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLF----VQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f----spdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                        ++.++                              +|    +|++++|++|+.||.|++||+++++++.+
T Consensus       259 --~v~~~------------------------------~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  298 (437)
T 3gre_A          259 --PITHV------------------------------EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYA  298 (437)
T ss_dssp             --EEEEE------------------------------EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred             --ceEEE------------------------------EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEE
Confidence              34444                              44    45688999999999999999999887764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.75  E-value=9.3e-18  Score=128.83  Aligned_cols=137  Identities=13%  Similarity=0.174  Sum_probs=95.0

Q ss_pred             ecCCeEEEEECCCCcc--ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC----CcceeEEEeccCCce
Q 032092            5 TADRNLVVFNLQNPQT--EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ----QSKNFTFKCHRDGSE   78 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~--~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~----~~~~~~~~~h~~~~~   78 (147)
                      +.||.|+|||+.+++.  +...+  .+..+|++++|+|++++|++|+.||.|++  ||..+    .+....+.+|.....
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~v--w~~~~~~~~~~~~~~~~~h~~~v~  117 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALDNGSLEL--YSTNEANNAINSMARFSNHSSSVK  117 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEESSSCEEE--ECCSSTTSCCCEEEECCCSSSCCC
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEccCCeEEE--eecccccccccchhhccCCccceE
Confidence            8899999999998752  22222  34567999999999999999999999999  55554    246667777876543


Q ss_pred             --EEeeccceeeeecCCC-cceeeeeeee--------e---eeeeece----EEEEEecC-CCeEEEeCCCCcEEEeecC
Q 032092           79 --TCSVISFTSILAGDAP-KYSSFYKVKR--------L---HLFVKSH----VIVLFVQI-HHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        79 --~~~v~~~~~~~~~~~~-~~~~~~~~~~--------~---~~~~~~~----~~~~fspd-g~~latg~~Dg~i~iWd~~  139 (147)
                        .+....-.++++++.+ .+.++. +..        .   .....+|    ..++|+|+ +++|++|+.||.|++||++
T Consensus       118 ~~~~~~~~~~~l~s~~~dg~v~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  196 (416)
T 2pm9_A          118 TVKFNAKQDNVLASGGNNGEIFIWD-MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK  196 (416)
T ss_dssp             EEEECSSSTTBEEEECSSSCEEBCB-TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred             EEEEcCCCCCEEEEEcCCCeEEEEE-CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence              3333312345454444 444443 211        1   1112333    57999999 6999999999999999999


Q ss_pred             Cceeeec
Q 032092          140 SKQRLKV  146 (147)
Q Consensus       140 ~~~~~~~  146 (147)
                      +++.+.+
T Consensus       197 ~~~~~~~  203 (416)
T 2pm9_A          197 AKKEVIH  203 (416)
T ss_dssp             TTEEEEE
T ss_pred             CCCcceE
Confidence            9877654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.9e-17  Score=125.07  Aligned_cols=139  Identities=12%  Similarity=0.158  Sum_probs=95.3

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCCc--ceeEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQS--KNFTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~~--~~~~~~~h~~   75 (147)
                      ||+|+.||.|+|||+..... ....+ ..|..+|++++|+|+  +++|++|+.||.|++  ||..+++  ....+.+|..
T Consensus        26 l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i--wd~~~~~~~~~~~~~~~~~  102 (379)
T 3jrp_A           26 LATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLI--WKEENGRWSQIAVHAVHSA  102 (379)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEE--EEEETTEEEEEEEECCCSS
T ss_pred             EEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE--EEcCCCceeEeeeecCCCc
Confidence            58899999999999985422 22333 346678999999987  999999999999999  5555454  5566666765


Q ss_pred             Cce--EEeec--cceeeeecCCCcceeeeeee---eeeeeeece----EEEEEec-------------CCCeEEEeCCCC
Q 032092           76 GSE--TCSVI--SFTSILAGDAPKYSSFYKVK---RLHLFVKSH----VIVLFVQ-------------IHHTFATAGSDG  131 (147)
Q Consensus        76 ~~~--~~~v~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~fsp-------------dg~~latg~~Dg  131 (147)
                      ...  .+...  ...+++++.+..+.++....   .....+.+|    ..++|+|             ++++|++|+.||
T Consensus       103 ~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  182 (379)
T 3jrp_A          103 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN  182 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTS
T ss_pred             ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC
Confidence            433  23333  22344445555555444211   112234444    5799999             689999999999


Q ss_pred             cEEEeecCCce
Q 032092          132 AFNFWDKDSKQ  142 (147)
Q Consensus       132 ~i~iWd~~~~~  142 (147)
                      .|++||+++++
T Consensus       183 ~i~i~d~~~~~  193 (379)
T 3jrp_A          183 LVKIWKYNSDA  193 (379)
T ss_dssp             CEEEEEEETTT
T ss_pred             eEEEEEecCCC
Confidence            99999987653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.75  E-value=5.2e-17  Score=127.09  Aligned_cols=138  Identities=15%  Similarity=0.226  Sum_probs=97.8

Q ss_pred             CeEeecCCeEEEEECCCCc--cceeEecCCCCcceEEEEEccCCC-EEEEEeeCCeEEEEeecCCC-CcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQ--TEFKRINSPLKYQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~--~~~~~~~~~~~~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~   76 (147)
                      |++|+.||.|++||+++++  ++...+. .+..+|++|+|+|+++ .|++|+.||+|++  ||.++ ...+.++.+|...
T Consensus       247 l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~v--wd~~~~~~~~~~~~~h~~~  323 (430)
T 2xyi_A          247 FGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVAL--WDLRNLKLKLHSFESHKDE  323 (430)
T ss_dssp             EEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEE--EETTCTTSCSEEEECCSSC
T ss_pred             EEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEE--EeCCCCCCCeEEeecCCCC
Confidence            4789999999999999873  3334443 4556799999999987 6889999999999  67665 4567788888765


Q ss_pred             ce--EEeeccceeeee-cCCCcceeeeeee---------------eeeeeeece----EEEEEecCCC-eEEEeCCCCcE
Q 032092           77 SE--TCSVISFTSILA-GDAPKYSSFYKVK---------------RLHLFVKSH----VIVLFVQIHH-TFATAGSDGAF  133 (147)
Q Consensus        77 ~~--~~~v~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~----~~~~fspdg~-~latg~~Dg~i  133 (147)
                      ..  .+....-.++++ +.+..+.+|..-.               .......+|    ..++|+|+++ +|++++.||.|
T Consensus       324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i  403 (430)
T 2xyi_A          324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM  403 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCE
Confidence            33  333333233444 4555555443211               223334454    5699999998 89999999999


Q ss_pred             EEeecCCc
Q 032092          134 NFWDKDSK  141 (147)
Q Consensus       134 ~iWd~~~~  141 (147)
                      +||++.+.
T Consensus       404 ~iw~~~~~  411 (430)
T 2xyi_A          404 QVWQMAEN  411 (430)
T ss_dssp             EEEEECHH
T ss_pred             EEeEcccc
Confidence            99998653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.75  E-value=3e-17  Score=123.28  Aligned_cols=139  Identities=15%  Similarity=0.191  Sum_probs=94.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEE------EccCCCEEEEEeeCCeEEEEeecCCCCc-ceeEEEec
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVA------AFPDQQGFWVGSIEGRVGVHHLDDSQQS-KNFTFKCH   73 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la------~spdg~~l~~g~~dg~i~i~~~d~~~~~-~~~~~~~h   73 (147)
                      |++|+.||.|++||+.+++.+...+. .+..+|.+++      |+|+++.|++|+.||.|++  ||.++++ ....+..|
T Consensus        83 l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v--wd~~~~~~~~~~~~~~  159 (357)
T 3i2n_A           83 LATGDFGGNLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV--WDPRQKDDPVANMEPV  159 (357)
T ss_dssp             EEEEETTSCEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE--ECTTSCSSCSEEECCC
T ss_pred             EEEecCCCeEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEE--EeCCCCCCcceecccc
Confidence            57899999999999998863445444 4566799994      5789999999999999999  7777665 56677655


Q ss_pred             cCC----ce--E----EeeccceeeeecCCC-cceeeeeeee-eeee----eeceEEEEEec---CCCeEEEeCCCCcEE
Q 032092           74 RDG----SE--T----CSVISFTSILAGDAP-KYSSFYKVKR-LHLF----VKSHVIVLFVQ---IHHTFATAGSDGAFN  134 (147)
Q Consensus        74 ~~~----~~--~----~~v~~~~~~~~~~~~-~~~~~~~~~~-~~~~----~~~~~~~~fsp---dg~~latg~~Dg~i~  134 (147)
                      ...    ..  .    +..+.. .+++++++ .+.++. +.. ....    -.....++|+|   ++++|++|+.||.|+
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFD-LRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH  237 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEE-TTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred             CCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEE-CccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence            431    11  1    112333 34444444 444443 221 1111    23346799999   999999999999999


Q ss_pred             EeecCCceee
Q 032092          135 FWDKDSKQRL  144 (147)
Q Consensus       135 iWd~~~~~~~  144 (147)
                      +||+++++.+
T Consensus       238 i~d~~~~~~~  247 (357)
T 3i2n_A          238 VFDMRTQHPT  247 (357)
T ss_dssp             EEEEEEEETT
T ss_pred             EEeCcCCCcc
Confidence            9999876654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.75  E-value=4.6e-17  Score=123.07  Aligned_cols=136  Identities=8%  Similarity=0.023  Sum_probs=90.6

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE--EeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF--KCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~--~~h~~~~   77 (147)
                      |++|+.||.|++||+.+++. ....+. .+..+|.+++|+|++++|++|+.||.|++|  |..+++....+  ..|....
T Consensus        23 l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~v   99 (372)
T 1k8k_C           23 IAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVW--TLKGRTWKPTLVILRINRAA   99 (372)
T ss_dssp             EEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEE--EEETTEEEEEEECCCCSSCE
T ss_pred             EEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEE--ECCCCeeeeeEEeecCCCce
Confidence            57888999999999998741 233443 456689999999999999999999999995  54444433333  4454432


Q ss_pred             e--EEeeccceeeeecCCCcceeeeeee-e---eeeee-ec----eEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           78 E--TCSVISFTSILAGDAPKYSSFYKVK-R---LHLFV-KS----HVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        78 ~--~~~v~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~----~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      .  .+..+.-.+++++.+..+.++.... .   ....+ .+    ...++|+|++++|++|+.||.|++||++
T Consensus       100 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C          100 RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  172 (372)
T ss_dssp             EEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             eEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence            2  2333333334444444444433111 1   11222 33    3579999999999999999999999953

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.74  E-value=9.7e-17  Score=125.34  Aligned_cols=138  Identities=14%  Similarity=0.186  Sum_probs=98.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.||.|++||+.+++. ...+. .+..+|.+++|  +++.|++|+.||+|++  ||..+++...++.+|.......
T Consensus       146 l~~g~~dg~i~iwd~~~~~~-~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~i~v--wd~~~~~~~~~~~~h~~~v~~l  219 (435)
T 1p22_A          146 IVSGLRDNTIKIWDKNTLEC-KRILT-GHTGSVLCLQY--DERVIITGSSDSTVRV--WDVNTGEMLNTLIHHCEAVLHL  219 (435)
T ss_dssp             EEEEESSSCEEEEESSSCCE-EEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEE--EESSSCCEEEEECCCCSCEEEE
T ss_pred             EEEEeCCCeEEEEeCCCCeE-EEEEc-CCCCcEEEEEE--CCCEEEEEcCCCeEEE--EECCCCcEEEEEcCCCCcEEEE
Confidence            57899999999999999864 34443 45668999988  7899999999999999  7777788888888887654444


Q ss_pred             eeccceeeeecCCCcceeeeeee----eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVK----RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ....-.+++++.+..+.++....    .....+.+|    ..++|  ++++|++|+.||.|++||+++++++++
T Consensus       220 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~  291 (435)
T 1p22_A          220 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT  291 (435)
T ss_dssp             ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE
Confidence            44443344445444554443211    111344555    34555  788999999999999999988887764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2.9e-17  Score=125.63  Aligned_cols=108  Identities=13%  Similarity=0.212  Sum_probs=83.5

Q ss_pred             CeEeecCCeEEEEEC----CCCcc-----ceeEecCC---------CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092            1 MVVGTADRNLVVFNL----QNPQT-----EFKRINSP---------LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         1 l~~gs~dg~v~iwdi----~~~~~-----~~~~~~~~---------~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      ||+|+.||.|++||+    .+++.     +...+..+         +..+|.+++|+|++++|++|+.||.|++  || .
T Consensus        61 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i--~~-~  137 (425)
T 1r5m_A           61 LAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRL--WN-K  137 (425)
T ss_dssp             EEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEE--EE-T
T ss_pred             EEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEE--Ee-C
Confidence            588999999999999    87752     12222221         3447999999999999999999999999  55 4


Q ss_pred             CCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           63 QQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        63 ~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      +++....+.+|..     ++.++                              +|+|++++|++++.||.|++||+++++
T Consensus       138 ~~~~~~~~~~~~~-----~v~~~------------------------------~~~~~~~~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          138 TGALLNVLNFHRA-----PIVSV------------------------------KWNKDGTHIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             TSCEEEEECCCCS-----CEEEE------------------------------EECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred             CCCeeeeccCCCc-----cEEEE------------------------------EECCCCCEEEEEecCCeEEEEECCCCc
Confidence            5677777777764     35565                              999999999999999999999999988


Q ss_pred             eeec
Q 032092          143 RLKV  146 (147)
Q Consensus       143 ~~~~  146 (147)
                      .+.+
T Consensus       183 ~~~~  186 (425)
T 1r5m_A          183 VMQH  186 (425)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.73  E-value=3e-17  Score=123.51  Aligned_cols=108  Identities=8%  Similarity=0.165  Sum_probs=87.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec---C-CCCcceEEEEEccC----CCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN---S-PLKYQMRCVAAFPD----QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~---~-~~~~~i~~la~spd----g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      +++++.++.|++||+.+++. ...+.   . .+...|.+++|+|+    +++|++|+.||.|++  ||..+++.+..+.+
T Consensus        37 ~~~~~~~~~v~vw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v--~d~~~~~~~~~~~~  113 (366)
T 3k26_A           37 VFATVGSNRVTLYECHSQGE-IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI--INPITMQCIKHYVG  113 (366)
T ss_dssp             EEEEEETTEEEEEEECGGGC-EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE--ECTTTCCEEEEEES
T ss_pred             EEEECCCCEEEEEEcCCCcE-EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE--EEchhceEeeeecC
Confidence            35667788999999997653 22222   1 24457999999999    679999999999999  78777888888888


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEec-CCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQ-IHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsp-dg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      |..     ++.++                              +|+| ++++|++|+.||.|++||+++++.+..
T Consensus       114 ~~~-----~i~~~------------------------------~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  153 (366)
T 3k26_A          114 HGN-----AINEL------------------------------KFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI  153 (366)
T ss_dssp             CCS-----CEEEE------------------------------EECSSCTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCC-----cEEEE------------------------------EECCCCCCEEEEEeCCCeEEEEEeecCeEEEE
Confidence            875     36666                              9999 889999999999999999999887654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.2e-16  Score=133.44  Aligned_cols=138  Identities=14%  Similarity=0.185  Sum_probs=96.4

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCC--cceeEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQ--SKNFTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~--~~~~~~~~h~~   75 (147)
                      |++|+.||.|++||+++++. ..... ..+..+|.+++|+|+  ++.+++|+.||+|++  ||.+++  .....+.+|..
T Consensus        70 l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v--wdl~~~~~~~~~~~~~~~~  146 (753)
T 3jro_A           70 LASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSV--VEFKENGTTSPIIIDAHAI  146 (753)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEE--EECCSSSCCCCEEEECCSS
T ss_pred             EEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE--EEeecCCCcceeEeecCCC
Confidence            58999999999999998752 22222 345678999999999  999999999999999  555443  34455666765


Q ss_pred             Cce--EEee-------------ccceeeeecCCCcceeeeeee-----eeeeeeece----EEEEEecC---CCeEEEeC
Q 032092           76 GSE--TCSV-------------ISFTSILAGDAPKYSSFYKVK-----RLHLFVKSH----VIVLFVQI---HHTFATAG  128 (147)
Q Consensus        76 ~~~--~~~v-------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~fspd---g~~latg~  128 (147)
                      ...  .+..             +...+++++.+..++++..-.     .....+.+|    ..++|+|+   +++|++|+
T Consensus       147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            432  2222             122234445555555543211     233345555    57999999   89999999


Q ss_pred             CCCcEEEeecCCc
Q 032092          129 SDGAFNFWDKDSK  141 (147)
Q Consensus       129 ~Dg~i~iWd~~~~  141 (147)
                      .||.|++||+.++
T Consensus       227 ~Dg~I~iwd~~~~  239 (753)
T 3jro_A          227 QDRTCIIWTQDNE  239 (753)
T ss_dssp             SSSCEEEEEESSS
T ss_pred             cCCEEEEecCCCC
Confidence            9999999999876

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.73  E-value=5.6e-17  Score=125.73  Aligned_cols=139  Identities=12%  Similarity=0.207  Sum_probs=90.8

Q ss_pred             CeEeecCCeEEEEECCCCcc----------ceeEecCCCC------------cceEEEEEccCC--CEEEEEeeCCeEEE
Q 032092            1 MVVGTADRNLVVFNLQNPQT----------EFKRINSPLK------------YQMRCVAAFPDQ--QGFWVGSIEGRVGV   56 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~----------~~~~~~~~~~------------~~i~~la~spdg--~~l~~g~~dg~i~i   56 (147)
                      ||+|+.||.|+|||+.+++.          ....+. .|.            .+|.+++|+|++  ..|++|+.||+|++
T Consensus        43 la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~i  121 (447)
T 3dw8_B           43 LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKL  121 (447)
T ss_dssp             EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEE
T ss_pred             EEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEE
Confidence            68999999999999998652          123333 344            569999999998  79999999999999


Q ss_pred             EeecCCCCcc---------------------------------------eeEE-EeccCCce--EEeeccceeeeecCCC
Q 032092           57 HHLDDSQQSK---------------------------------------NFTF-KCHRDGSE--TCSVISFTSILAGDAP   94 (147)
Q Consensus        57 ~~~d~~~~~~---------------------------------------~~~~-~~h~~~~~--~~~v~~~~~~~~~~~~   94 (147)
                      |+++.  +..                                       ...+ .+|.....  .+..+.. .+++|.|.
T Consensus       122 w~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~d~  198 (447)
T 3dw8_B          122 WKISE--RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE-TYLSADDL  198 (447)
T ss_dssp             EEEEE--EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS-EEEEECSS
T ss_pred             Eeccc--ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC-EEEEeCCC
Confidence            65543  111                                       0122 34654322  2333333 34445444


Q ss_pred             cceeeeee--eeeee-------eeece----EEEEEecCC-CeEEEeCCCCcEEEeecCCcee
Q 032092           95 KYSSFYKV--KRLHL-------FVKSH----VIVLFVQIH-HTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        95 ~~~~~~~~--~~~~~-------~~~~~----~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      .+.++...  .+...       .+.+|    ..++|+|++ ++|++|+.||.|++||+++++.
T Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          199 RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            44444311  11111       23344    579999999 9999999999999999988765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.73  E-value=1.1e-16  Score=132.68  Aligned_cols=143  Identities=20%  Similarity=0.256  Sum_probs=101.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC-Cc-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD-GS-   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~-~~-   77 (147)
                      |++|+.||.|++||++++......+. .+..+|.+++|+| +++.|++|+.||+|++  ||.++++....+..|.. .. 
T Consensus       112 l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v--wd~~~~~~~~~~~~~~~~~v~  188 (814)
T 3mkq_A          112 VLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKV--WSLGQSTPNFTLTTGQERGVN  188 (814)
T ss_dssp             EEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEE--EETTCSSCSEEEECCCTTCCC
T ss_pred             EEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEE--EECCCCcceeEEecCCCCCEE
Confidence            57899999999999998744333333 4556799999999 8999999999999999  67666677777765542 22 


Q ss_pred             -eEEee--ccceeeeecCCCcceeeee-eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           78 -ETCSV--ISFTSILAGDAPKYSSFYK-VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        78 -~~~~v--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                       ..+..  +.-.+++++.+..+.++.. ..+....+.+|    ..++|+|++++|++|+.||.|++||+.+++.+.+
T Consensus       189 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  265 (814)
T 3mkq_A          189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT  265 (814)
T ss_dssp             EEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence             23333  3333344444444555441 12334444554    4689999999999999999999999998877654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.72  E-value=2.4e-16  Score=123.14  Aligned_cols=138  Identities=12%  Similarity=0.111  Sum_probs=95.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.||+|++||+.+++. ...+. .|..+|.+++|+  ++.+++|+.||+|++  ||..+++...++.+|.....+.
T Consensus       132 l~sg~~dg~i~vwd~~~~~~-~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~v--wd~~~~~~~~~~~~h~~~v~~~  205 (445)
T 2ovr_B          132 IVSGSDDNTLKVWSAVTGKC-LRTLV-GHTGGVWSSQMR--DNIIISGSTDRTLKV--WNAETGECIHTLYGHTSTVRCM  205 (445)
T ss_dssp             EEEEETTSCEEEEETTTCCE-EEECC-CCSSCEEEEEEE--TTEEEEEETTSCEEE--EETTTTEEEEEECCCSSCEEEE
T ss_pred             EEEEECCCcEEEEECCCCcE-EEEEc-CCCCCEEEEEec--CCEEEEEeCCCeEEE--EECCcCcEEEEECCCCCcEEEE
Confidence            57899999999999998863 34443 456689999997  679999999999999  6777788888888887654444


Q ss_pred             eeccceeeeecCCCcceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ....-.+++++.+..+.++... .+....+.+|    ..++|  ++++|++|+.||.|++||+++++++++
T Consensus       206 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~  274 (445)
T 2ovr_B          206 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT  274 (445)
T ss_dssp             EEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE
T ss_pred             EecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE
Confidence            4444334444444444444321 2233344454    23454  777888888888888888887776654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.71  E-value=3.2e-16  Score=122.45  Aligned_cols=140  Identities=16%  Similarity=0.193  Sum_probs=92.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.||+|++||+++++. ...+. .+..++.++++  +++.+++|+.||.|++  ||.++++...++.+|.......
T Consensus       212 l~s~s~dg~i~~wd~~~~~~-~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~v~~~  285 (445)
T 2ovr_B          212 VVSGSRDATLRVWDIETGQC-LHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKV--WDPETETCLHTLQGHTNRVYSL  285 (445)
T ss_dssp             EEEEETTSEEEEEESSSCCE-EEEEE-CCSSCEEEEEE--CSSCEEEEETTSCEEE--EEGGGTEEEEEECCCSSCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCcE-EEEEc-CCcccEEEEEE--CCCEEEEEcCCCEEEE--EECCCCcEeEEecCCCCceEEE
Confidence            46788888888888887753 33333 34456888877  6788888888888888  6666677777777776654433


Q ss_pred             eeccceeeeecCCCcceeeee-eeeeeeeeeceE--EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYK-VKRLHLFVKSHV--IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..+...+++++.+..+.++.. ..+....+.+|.  ..++.+++++|++|+.||.|++||+++++.+.+
T Consensus       286 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  354 (445)
T 2ovr_B          286 QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT  354 (445)
T ss_dssp             EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            344443444455555554442 122334455553  235666778899999999999999888877654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.71  E-value=3.9e-16  Score=122.10  Aligned_cols=137  Identities=15%  Similarity=0.194  Sum_probs=95.8

Q ss_pred             CeEeecCCeEEEEECCCCccc------eeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCC---cceeEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTE------FKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQ---SKNFTF   70 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~------~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~---~~~~~~   70 (147)
                      |++|+.||.|++||++++...      ...+ ..+...|.+++|+| ++..|++++.||.|++  ||.+++   +....+
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i--~d~~~~~~~~~~~~~  273 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMI--WDTRNNNTSKPSHTV  273 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEE--EETTCSCSSSCSEEE
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE--EECCCCCCCcceeEe
Confidence            578999999999999984321      1222 24556799999999 6789999999999999  666654   566677


Q ss_pred             EeccCCceE--EeeccceeeeecCCCc-ceeee--eeeeeeeeeece----EEEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092           71 KCHRDGSET--CSVISFTSILAGDAPK-YSSFY--KVKRLHLFVKSH----VIVLFVQIH-HTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        71 ~~h~~~~~~--~~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~----~~~~fspdg-~~latg~~Dg~i~iWd~~~  140 (147)
                      ..|.....+  +....-.++++|+.++ +.++.  ........+.+|    .+++|+|++ .+|++|+.||.|+|||+.+
T Consensus       274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            777764332  3333323455555554 44433  212334445554    579999999 5799999999999999976

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.71  E-value=9.8e-17  Score=128.55  Aligned_cols=142  Identities=12%  Similarity=0.009  Sum_probs=99.0

Q ss_pred             CeEeecCCeEEEEECCCC------c-cceeEecCCCCcceEEEEEccCCCEEEEEeeC----CeEEEEeecCCCCcceeE
Q 032092            1 MVVGTADRNLVVFNLQNP------Q-TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE----GRVGVHHLDDSQQSKNFT   69 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~------~-~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d----g~i~i~~~d~~~~~~~~~   69 (147)
                      |++|+.||.|++||+.++      + +....+. .+..+|.+++|+|++++|++++.+    +.|.+  ||.  ++....
T Consensus        81 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~--~d~--~~~~~~  155 (615)
T 1pgu_A           81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS--WDS--GNSLGE  155 (615)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE--TTT--CCEEEE
T ss_pred             EEEecCCCEEEEEeCCCCcccccccccccchhh-cccccEEEEEEeCCCCEEEEeccCCCCccEEEE--EEC--CCccee
Confidence            588999999999999754      1 2223333 355689999999999999999987    67877  774  567777


Q ss_pred             EEeccCCceE--EeeccceeeeecCCC-cceeeee-eeeeeeeee-------ceEEEEEecC-CCeEEEeCCCCcEEEee
Q 032092           70 FKCHRDGSET--CSVISFTSILAGDAP-KYSSFYK-VKRLHLFVK-------SHVIVLFVQI-HHTFATAGSDGAFNFWD  137 (147)
Q Consensus        70 ~~~h~~~~~~--~~v~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~-------~~~~~~fspd-g~~latg~~Dg~i~iWd  137 (147)
                      +.+|......  +....-.++++++.+ .++++.. ..+....+.       ....++|+|+ +++|++|+.||.|++||
T Consensus       156 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd  235 (615)
T 1pgu_A          156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  235 (615)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            7788765332  323332244444444 4554441 112233333       3457899999 99999999999999999


Q ss_pred             cCCceeeecC
Q 032092          138 KDSKQRLKVF  147 (147)
Q Consensus       138 ~~~~~~~~~~  147 (147)
                      +++++.+.++
T Consensus       236 ~~~~~~~~~~  245 (615)
T 1pgu_A          236 GKSGEFLKYI  245 (615)
T ss_dssp             TTTCCEEEEC
T ss_pred             CCCCCEeEEe
Confidence            9998887653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.71  E-value=3.8e-16  Score=118.98  Aligned_cols=139  Identities=16%  Similarity=0.145  Sum_probs=97.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC---CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD---QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd---g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~   77 (147)
                      |++|+.||.|++||+++++. ...+.  +..++.+++++|.   +.++++|+.||.|++  ||.++++....+.+|....
T Consensus       115 l~s~~~d~~i~iwd~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~d~~~~~~~~~~~~~~~~v  189 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQT-ADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQL--CDLKSGSCSHILQGHRQEI  189 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEE-EEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEE--EESSSSCCCEEECCCCSCE
T ss_pred             EEEEeCCCeEEEeeCCCCcc-ceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEE--EeCCCcceeeeecCCCCcE
Confidence            57889999999999999853 33343  3356899999985   459999999999999  7777788888888887653


Q ss_pred             eE--EeeccceeeeecCCC-cceeeee--eeeeeeee---------------ece----EEEEEecCCCeEEEeCCCCcE
Q 032092           78 ET--CSVISFTSILAGDAP-KYSSFYK--VKRLHLFV---------------KSH----VIVLFVQIHHTFATAGSDGAF  133 (147)
Q Consensus        78 ~~--~~v~~~~~~~~~~~~-~~~~~~~--~~~~~~~~---------------~~~----~~~~fspdg~~latg~~Dg~i  133 (147)
                      .+  +....-.++++|+.+ .+.++..  .......+               .+|    ..++|+|++++|++|+.||.|
T Consensus       190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  269 (408)
T 4a11_B          190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM  269 (408)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence            32  333333235444444 4444331  11111111               233    578999999999999999999


Q ss_pred             EEeecCCceee
Q 032092          134 NFWDKDSKQRL  144 (147)
Q Consensus       134 ~iWd~~~~~~~  144 (147)
                      ++||+++++.+
T Consensus       270 ~vwd~~~~~~~  280 (408)
T 4a11_B          270 RLWNSSNGENT  280 (408)
T ss_dssp             EEEETTTCCBC
T ss_pred             EEEECCCCccc
Confidence            99999987654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.70  E-value=3.7e-16  Score=122.03  Aligned_cols=136  Identities=15%  Similarity=0.182  Sum_probs=97.4

Q ss_pred             CeEeecCCeEEEEECCCCccce-eEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEF-KRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~-~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      |++|+.||.|++||+++++... ......+..+|.++++  +++++++|+.||+|++  ||.++++.+.++.+|.....+
T Consensus       226 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v--wd~~~~~~~~~~~~~~~~v~~  301 (435)
T 1p22_A          226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV--WNTSTCEFVRTLNGHKRGIAC  301 (435)
T ss_dssp             EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE--EETTTCCEEEEEECCSSCEEE
T ss_pred             EEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE--EECCcCcEEEEEcCCCCcEEE
Confidence            5789999999999999875321 1222345667999988  6899999999999999  788888888899988875444


Q ss_pred             EeeccceeeeecCCCcceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           80 CSVISFTSILAGDAPKYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      .....-.+++++.|..++++..- .+....+.+|    ..++|  ++++|++|+.||.|++||+++++
T Consensus       302 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          302 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence            44444434444555555554421 2334455666    34555  88999999999999999987654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.70  E-value=8.7e-17  Score=130.94  Aligned_cols=103  Identities=15%  Similarity=0.193  Sum_probs=76.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCC----CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc-------eeE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPL----KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK-------NFT   69 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~----~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~-------~~~   69 (147)
                      ||+++.||.|+|||.+.   ....+. ++    ...+.+++|||||++||+|+.||+|+|  ||..++..       +.+
T Consensus       100 LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI--Wd~~~~~l~~~~~i~l~t  173 (588)
T 2j04_A          100 MAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF--FSIRKNSENTPEFYFESS  173 (588)
T ss_dssp             EEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE--EECCCCTTTCCCCEEEEE
T ss_pred             EEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE--EECCCCccccccceeeee
Confidence            68999999999999544   233333 22    125999999999999999999999999  66665542       456


Q ss_pred             EEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           70 FKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        70 ~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      ++.|... +...|.++                              +|+|||  +++++.|++|++||+++++
T Consensus       174 i~~~~~g-h~~~V~sV------------------------------awSPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          174 IRLSDAG-SKDWVTHI------------------------------VWYEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             EECSCTT-CCCCEEEE------------------------------EEETTE--EEEEETTCCEEEECCCSSS
T ss_pred             eeccccc-ccccEEEE------------------------------EEcCCc--EEEEeCCCeEEEEECCCCc
Confidence            6433321 11135555                              999999  8888999999999998776

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.69  E-value=1e-16  Score=124.38  Aligned_cols=125  Identities=13%  Similarity=0.119  Sum_probs=73.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE-   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~-   78 (147)
                      ||+|+.|++|+|||++++..... .. .+..++.+++|+|++. +|++|+.||+|++  ||.++++...+...+..... 
T Consensus       159 las~s~D~tv~~Wd~~~~~~~~~-~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~--wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          159 IASVGDDCTLIIWRLTDEGPILA-GY-PLSSPGISVQFRPSNPNQLIVGERNGNIRI--FDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEE-EE-ECSSCEEEEEEETTEEEEEEEEETTSEEEE--EETTCCC----------CSCC
T ss_pred             EEEEECCCeEEEEECCCCceeee-ec-CCCCCcEEEEECCCCCceEEecCCCCEEEE--EECCCCcccccccccCCcccc
Confidence            68999999999999988754322 22 3446799999999874 7999999999999  77776665544433322110 


Q ss_pred             -EEeeccceeeeecCCCcceeeeeeeeeeeeeece----EEEEEe-cCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           79 -TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH----VIVLFV-QIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        79 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fs-pdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                       .......        .       +. ......+|    ..++|+ |||+.|++++.|+++++||+.+++...
T Consensus       235 ~~~s~~~~--------~-------~~-~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~  291 (393)
T 4gq1_A          235 WLLTLNTL--------P-------LV-NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN  291 (393)
T ss_dssp             CSEEEESG--------G-------GC-------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred             eEEecccc--------c-------ce-eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence             0000000        0       00 00001111    245776 799999999999999999998766543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.69  E-value=3.3e-16  Score=130.80  Aligned_cols=138  Identities=12%  Similarity=0.159  Sum_probs=95.0

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCCc--ceeEEEeccC
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQS--KNFTFKCHRD   75 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~~--~~~~~~~h~~   75 (147)
                      |++|+.||.|+|||+..+.. ....+ ..|..+|++++|+|+  +++|++|+.||+|++|  |..+++  ....+.+|..
T Consensus        24 latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw--d~~~~~~~~~~~~~~h~~  100 (753)
T 3jro_A           24 LATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW--KEENGRWSQIAVHAVHSA  100 (753)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE--EEETTEEEEEEEECCCSS
T ss_pred             EEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE--ECCCCcccccccccCCCC
Confidence            58899999999999985432 22333 346678999999998  9999999999999995  544444  5566677766


Q ss_pred             Cce--EEeec--cceeeeecCCCcceeeeeee---eeeeeeece----EEEEEec-------------CCCeEEEeCCCC
Q 032092           76 GSE--TCSVI--SFTSILAGDAPKYSSFYKVK---RLHLFVKSH----VIVLFVQ-------------IHHTFATAGSDG  131 (147)
Q Consensus        76 ~~~--~~~v~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~fsp-------------dg~~latg~~Dg  131 (147)
                      ...  .+...  ...+++++.+..+.++..-.   .....+.+|    ..++|+|             ++++|++|+.||
T Consensus       101 ~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg  180 (753)
T 3jro_A          101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN  180 (753)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS
T ss_pred             CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC
Confidence            533  23333  32334445444454444211   112233444    5789999             589999999999


Q ss_pred             cEEEeecCCc
Q 032092          132 AFNFWDKDSK  141 (147)
Q Consensus       132 ~i~iWd~~~~  141 (147)
                      .|++||++++
T Consensus       181 ~I~iwd~~~~  190 (753)
T 3jro_A          181 LVKIWKYNSD  190 (753)
T ss_dssp             CEEEEEEETT
T ss_pred             eEEEEeccCC
Confidence            9999999776

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.69  E-value=3.8e-17  Score=129.07  Aligned_cols=100  Identities=13%  Similarity=0.044  Sum_probs=77.2

Q ss_pred             EeecCCeEEEEECCCC-----c--cceeEe--cCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092            3 VGTADRNLVVFNLQNP-----Q--TEFKRI--NSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~-----~--~~~~~~--~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      +|+.|+.|+|||++++     +  +++..+  ...|..+|++|+|+|+ ++.|++++.||+|++  ||.+++.......+
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~i--wD~~~~~~~~~~~~  190 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAV--LQVTETVKVCATLP  190 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEE--EEESSSEEEEEEEC
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEE--EEcCCCcceeeccC
Confidence            6788999999999764     1  122112  1235567999999998 889999999999999  66666655445555


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                      |..     .+.++                              +|+|+|++||+|+.||+|++||.+
T Consensus       191 ~~~-----~v~~v------------------------------~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          191 STV-----AVTSV------------------------------CWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             GGG-----CEEEE------------------------------EECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCC-----ceeEE------------------------------EEcCCCCEEEEEcCCCcEEEEccC
Confidence            553     35555                              999999999999999999999997

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.68  E-value=1.7e-15  Score=116.95  Aligned_cols=137  Identities=9%  Similarity=-0.032  Sum_probs=88.1

Q ss_pred             cCCeEEEEECCC-CccceeEecCCCCcceEEEEEcc---CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC---c-
Q 032092            6 ADRNLVVFNLQN-PQTEFKRINSPLKYQMRCVAAFP---DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG---S-   77 (147)
Q Consensus         6 ~dg~v~iwdi~~-~~~~~~~~~~~~~~~i~~la~sp---dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~---~-   77 (147)
                      .|+.|++|++.. ++ ...... .+...++.++|+|   +++.||+|+.|++|+|  ||+++++.+.++.+|...   . 
T Consensus       155 ~d~~V~~~~~s~dG~-~~~s~~-~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkI--WDl~TGk~l~tL~g~~~~v~~v~  230 (356)
T 2w18_A          155 SDQQVEVMTFAEDGG-GKENQF-LMPPEETILTFAEVQGMQEALLGTTIMNNIVI--WNLKTGQLLKKMHIDDSYQASVC  230 (356)
T ss_dssp             TTCEEEEEEECTTSC-EEEEEE-ECCCSSCEEEEEEEETSTTEEEEEETTSEEEE--EETTTCCEEEEEECCC---CCCE
T ss_pred             CCCcEEEEEECCCCc-eeeeec-cCCCceeeEEeeccCCCCceEEEecCCCcEEE--EECCCCcEEEEEcCCCcceeeeE
Confidence            499999999955 53 222222 2334588999999   7799999999999999  888889999999865431   1 


Q ss_pred             -eEEeecccee-----------eeecCCCc-ceeeeeee--eeeeee-----eceE--EEEEecCCCeEEEeCCCCcEEE
Q 032092           78 -ETCSVISFTS-----------ILAGDAPK-YSSFYKVK--RLHLFV-----KSHV--IVLFVQIHHTFATAGSDGAFNF  135 (147)
Q Consensus        78 -~~~~v~~~~~-----------~~~~~~~~-~~~~~~~~--~~~~~~-----~~~~--~~~fspdg~~latg~~Dg~i~i  135 (147)
                       .++..+...+           +++|+.+. ++.+ +..  +....+     .||.  .+..+.++.++|+|+.|++|+|
T Consensus       231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW-d~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkI  309 (356)
T 2w18_A          231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI-NPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAI  309 (356)
T ss_dssp             EEEEEETTEEEEEEC------------CCEEEEEE-ETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEE
T ss_pred             EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE-ECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEE
Confidence             1244444322           24455553 4443 322  111111     2452  2344445778999999999999


Q ss_pred             eecCCceeeecC
Q 032092          136 WDKDSKQRLKVF  147 (147)
Q Consensus       136 Wd~~~~~~~~~~  147 (147)
                      ||++++++++++
T Consensus       310 WDl~tGk~l~tL  321 (356)
T 2w18_A          310 WDLLLGQCTALL  321 (356)
T ss_dssp             EETTTCSEEEEE
T ss_pred             EECCCCcEEEEe
Confidence            999999988764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.67  E-value=3.7e-16  Score=117.01  Aligned_cols=133  Identities=14%  Similarity=0.143  Sum_probs=90.8

Q ss_pred             CeEeecCCeEEEEEC-CCCccceeEecCC--CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC---------Cccee
Q 032092            1 MVVGTADRNLVVFNL-QNPQTEFKRINSP--LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ---------QSKNF   68 (147)
Q Consensus         1 l~~gs~dg~v~iwdi-~~~~~~~~~~~~~--~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~---------~~~~~   68 (147)
                      |++|+.||.|++||+ .+++.  ..+. .  +..+|.+++|+| ++.|++++.||.|++  ||.++         ++...
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~--~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~i--wd~~~~~~~~~~~~~~~~~  145 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSF--QALT-NNEANLGICRICKYG-DDKLIAASWDGLIEV--IDPRNYGDGVIAVKNLNSN  145 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSE--EECB-SCCCCSCEEEEEEET-TTEEEEEETTSEEEE--ECHHHHTTBCEEEEESCSS
T ss_pred             EEEEcCCCeEEEEEeccCCce--Eecc-ccCCCCceEEEEeCC-CCEEEEEcCCCeEEE--EcccccccccccccCCeee
Confidence            578999999999999 87642  3333 3  567899999999 999999999999999  56554         44444


Q ss_pred             EEEeccCCceEEeeccceeeeecCCCcceeeeeeee-----eeeeee----ceEEEEEec-CCCeEEEeCCCCcEEEeec
Q 032092           69 TFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKR-----LHLFVK----SHVIVLFVQ-IHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        69 ~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~~~~fsp-dg~~latg~~Dg~i~iWd~  138 (147)
                      ++. |.............+++++.+..+.++. +..     ......    ....++|+| ++++|++|+.||.|++||+
T Consensus       146 ~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~  223 (342)
T 1yfq_A          146 NTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFR-LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             SSS-SCCCEEEEEECSSEEEEEESTTEEEEEE-SSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred             EEe-eCCceEEEEecCCcEEEEeCCCeEEEEE-CCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence            443 4433222333333344444444444443 222     111222    235789999 9999999999999999999


Q ss_pred             CCc
Q 032092          139 DSK  141 (147)
Q Consensus       139 ~~~  141 (147)
                      +.+
T Consensus       224 ~~~  226 (342)
T 1yfq_A          224 DDQ  226 (342)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            776

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.67  E-value=7.8e-16  Score=133.20  Aligned_cols=140  Identities=16%  Similarity=0.146  Sum_probs=102.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~   78 (147)
                      |++|+.||.|++||+.+++.. . . ..+...+.+++|+|++ .+++++.||+|++  ||..+++...++.+|....  .
T Consensus      1018 l~s~~~dg~i~vwd~~~~~~~-~-~-~~~~~~v~~~~~~~~~-~l~~~~~dg~v~v--wd~~~~~~~~~~~~~~~~v~~~ 1091 (1249)
T 3sfz_A         1018 LISSSEDSVIQVWNWQTGDYV-F-L-QAHQETVKDFRLLQDS-RLLSWSFDGTVKV--WNVITGRIERDFTCHQGTVLSC 1091 (1249)
T ss_dssp             EEEECSSSBEEEEETTTTEEE-C-C-BCCSSCEEEEEECSSS-EEEEEESSSEEEE--EETTTTCCCEEEECCSSCCCCE
T ss_pred             EEEEcCCCEEEEEECCCCceE-E-E-ecCCCcEEEEEEcCCC-cEEEEECCCcEEE--EECCCCceeEEEcccCCcEEEE
Confidence            578999999999999998532 1 2 2455679999999966 6789999999999  7888888888999887643  2


Q ss_pred             EEeeccceeeeecCCCcceeeee-eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYK-VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+..+...+++++.|..+.+|.. ..+....+.+|    ..++|+|||++||+|+.||.|++||+.+++.+.+
T Consensus      1092 ~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~ 1164 (1249)
T 3sfz_A         1092 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164 (1249)
T ss_dssp             EECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCC
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE
Confidence            34334433444455545554441 11223344454    5789999999999999999999999999887654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.67  E-value=1.5e-15  Score=116.26  Aligned_cols=136  Identities=13%  Similarity=0.099  Sum_probs=89.3

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC-cceeEEEeccCCceEE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDGSETC   80 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~-~~~~~~~~h~~~~~~~   80 (147)
                      ++|+.|++|+|||+++++. ...+.  +..+|.+++++|+.  ++++ .|++|++  ||..++ +.+.++.. .....++
T Consensus        75 ~~~~~d~~v~iWd~~~~~~-~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i--~d~~~~~~~~~~~~~-~~~~~~~  145 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQD-VSRIK--VDAPVKDLFLSREF--IVVS-YGDVISV--FKFGNPWKRITDDIR-FGGVCEF  145 (355)
T ss_dssp             EECSSTTEEEEEETTTTEE-EEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEE--EESSTTCCBSSCCEE-EEEEEEE
T ss_pred             EEECCccEEEEEECCCCcE-EEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEE--EECCCCceeeEEecc-CCceEEE
Confidence            4678899999999999864 44444  33479999998764  4443 5899999  666655 45444443 1111122


Q ss_pred             eeccceeeeecCCCcceeeeeeee------------------eeeeeece----EEEEEecCCCeEEEeCCCCc-EEEee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKR------------------LHLFVKSH----VIVLFVQIHHTFATAGSDGA-FNFWD  137 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~----~~~~fspdg~~latg~~Dg~-i~iWd  137 (147)
                      .. ....+.+|+.++....+++..                  ....+.+|    ..++|+|+|++||||+.||+ |+|||
T Consensus       146 s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd  224 (355)
T 3vu4_A          146 SN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK  224 (355)
T ss_dssp             ET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred             Ec-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            22 221223256664333333321                  13556676    47999999999999999998 99999


Q ss_pred             cCCceeeecC
Q 032092          138 KDSKQRLKVF  147 (147)
Q Consensus       138 ~~~~~~~~~~  147 (147)
                      +++++++++|
T Consensus       225 ~~~~~~~~~~  234 (355)
T 3vu4_A          225 TEDGVLVREF  234 (355)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCcEEEEE
Confidence            9999887754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.66  E-value=6.4e-15  Score=112.57  Aligned_cols=141  Identities=11%  Similarity=0.064  Sum_probs=97.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCcceeEEEeccCC-ce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~   78 (147)
                      +++++.|+.|++||+.+++. ...+.. + ..+.+++|+|+|+.+ ++++.|++|++  ||..+++....+..+..- ..
T Consensus         5 ~vs~~~d~~v~v~d~~~~~~-~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~d~~i~v--~d~~~~~~~~~~~~~~~v~~~   79 (391)
T 1l0q_A            5 YIANSESDNISVIDVTSNKV-TATIPV-G-SNPMGAVISPDGTKVYVANAHSNDVSI--IDTATNNVIATVPAGSSPQGV   79 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEE-EEEEEC-S-SSEEEEEECTTSSEEEEEEGGGTEEEE--EETTTTEEEEEEECSSSEEEE
T ss_pred             EEEcCCCCEEEEEECCCCeE-EEEeec-C-CCcceEEECCCCCEEEEECCCCCeEEE--EECCCCeEEEEEECCCCccce
Confidence            47889999999999999853 344432 2 358999999999976 67779999999  787778777777655421 12


Q ss_pred             EEeeccceeeeecCCC-cceeeeee-eeeeeeeec---eEEEEEecCCCeE-EEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAP-KYSSFYKV-KRLHLFVKS---HVIVLFVQIHHTF-ATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~---~~~~~fspdg~~l-atg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+..+.-.++++++++ .+.++... .+....+..   ...++|+|+|+.| ++++.|+.|++||+++++.+..
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            3333333344555554 44444311 122223322   3578999999876 7888899999999999887654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.63  E-value=5.2e-15  Score=116.08  Aligned_cols=127  Identities=6%  Similarity=-0.055  Sum_probs=83.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.|++|++||+++++. ...+...+..+|.+++|+ ++++|++|+.||+|++  ||.++++.+..+..+..     
T Consensus       213 l~s~~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~v--wd~~~~~~~~~~~~~~~-----  283 (450)
T 2vdu_B          213 IITSDRDEHIKISHYPQCFI-VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFA--WDWKTGKNLSTFDYNSL-----  283 (450)
T ss_dssp             EEEEETTSCEEEEEESCTTC-EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEE--EETTTCCEEEEEECHHH-----
T ss_pred             EEEEcCCCcEEEEECCCCce-eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEE--EECCCCcEeeeecchhh-----
Confidence            57899999999999998864 344333566789999999 9999999999999999  77777887777764421     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-CCCcEEEeec--CCc
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-SDGAFNFWDK--DSK  141 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~Dg~i~iWd~--~~~  141 (147)
                       +..+.. .... .... +. .......-.....++|+|++++|++++ .|+.|+|||+  .++
T Consensus       284 -~~~~~~-~~~~-~~~~-~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          284 -IKPYLN-DQHL-APPR-FQ-NENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             -HGGGCC-TTSB-C------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred             -hhhhhh-hccc-cccc-cc-ccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence             000000 0000 0000 00 000000001123459999999999988 8999999999  554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.62  E-value=8.4e-15  Score=119.32  Aligned_cols=131  Identities=12%  Similarity=0.044  Sum_probs=90.5

Q ss_pred             CeEeecCCeEEEEECCCCcc------ceeEec---CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc---ee
Q 032092            1 MVVGTADRNLVVFNLQNPQT------EFKRIN---SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK---NF   68 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~------~~~~~~---~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~---~~   68 (147)
                      ||+|+.||+|+|||++++..      .++++.   .+|...|.+++|+|||  +++++.|++|++  ||...++.   ..
T Consensus       144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrl--Wd~~~~~~~~~~~  219 (588)
T 2j04_A          144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFS--MTVSASSHQPVSR  219 (588)
T ss_dssp             EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEE--ECCCSSSSCCCEE
T ss_pred             EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEE--EECCCCcccccee
Confidence            68999999999999998742      134442   2355689999999999  889999999999  55554442   34


Q ss_pred             EEE-eccCCc--eEEeeccceeeeecCCCcceeeeeeeeeeeeee-ce----EEEEE--ecCCCeEEEeCCCCcEEEeec
Q 032092           69 TFK-CHRDGS--ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVK-SH----VIVLF--VQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        69 ~~~-~h~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~f--spdg~~latg~~Dg~i~iWd~  138 (147)
                      +++ +|+...  ..+.  . ..++++++..++.|.........+. +|    ..++|  +||++.|++++.||+ ++|..
T Consensus       220 tL~~~h~~~V~svaFs--g-~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          220 MIQNASRRKITDLKIV--D-YKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             EEECCCSSCCCCEEEE--T-TEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             eecccccCcEEEEEEE--C-CEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            564 676432  3343  2 3455545555555553323232332 66    36899  999999999999999 99997


Q ss_pred             C
Q 032092          139 D  139 (147)
Q Consensus       139 ~  139 (147)
                      +
T Consensus       296 d  296 (588)
T 2j04_A          296 D  296 (588)
T ss_dssp             S
T ss_pred             c
Confidence            5

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.59  E-value=1.3e-13  Score=105.35  Aligned_cols=140  Identities=11%  Similarity=0.075  Sum_probs=93.3

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcceeEEEeccCC-ceE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SET   79 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~~   79 (147)
                      ++++.|+.|++||+.+++. ...+..+  ..+.+++|+|++++++ +++.++.|++  ||..+++....+..|... ...
T Consensus        48 ~~~~~d~~i~v~d~~~~~~-~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~~v~v--~d~~~~~~~~~~~~~~~~~~~~  122 (391)
T 1l0q_A           48 VANAHSNDVSIIDTATNNV-IATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSV--IDTTSNTVAGTVKTGKSPLGLA  122 (391)
T ss_dssp             EEEGGGTEEEEEETTTTEE-EEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEE--EETTTTEEEEEEECSSSEEEEE
T ss_pred             EECCCCCeEEEEECCCCeE-EEEEECC--CCccceEECCCCCEEEEEECCCCEEEE--EECCCCeEEEEEeCCCCcceEE
Confidence            5677899999999998864 3444322  3799999999999875 5556799999  788777777777655431 123


Q ss_pred             EeeccceeeeecCCC-cceeeeee-eeeeeeee---ceEEEEEecCCCeE-EEeCCCCcEEEeecCCceeeec
Q 032092           80 CSVISFTSILAGDAP-KYSSFYKV-KRLHLFVK---SHVIVLFVQIHHTF-ATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~---~~~~~~fspdg~~l-atg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +..+.-.++.+++++ .+..+... .+....+.   ....++|+|+|+.| ++++.|+.|++||+++++.+..
T Consensus       123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  195 (391)
T 1l0q_A          123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            333333343444444 44444311 12222232   23578999999876 7888899999999998877653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.53  E-value=6.4e-14  Score=108.34  Aligned_cols=107  Identities=11%  Similarity=0.055  Sum_probs=83.3

Q ss_pred             eEeecCCeEEEEECCCCccceeEec----CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRIN----SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS   77 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~----~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~   77 (147)
                      ++++.|+.|++||+.+++. .....    ..+...+.+++|+|+++.+++++.|+.|++  ||.++++...++..|..  
T Consensus       138 ~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~--~d~~~~~~~~~~~~~~~--  212 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQT-VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV--FDLKTLAYKATVDLTGK--  212 (433)
T ss_dssp             EEBTTSSSEEEEETTTCCE-EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE--EETTTCCEEEEEECSSS--
T ss_pred             EEeCCCCeEEEEECCCCeE-eeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE--EECCCceEEEEEcCCCC--
Confidence            5667788999999998864 23211    134457999999999999999999999999  77777777777776654  


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeE-EEeCCCCcEEEeecCCceeeec
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTF-ATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l-atg~~Dg~i~iWd~~~~~~~~~  146 (147)
                         .+..+                              +|+|+++.+ ++++.|+.|++||+++++.+.+
T Consensus       213 ---~~~~~------------------------------~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  249 (433)
T 3bws_A          213 ---WSKIL------------------------------LYDPIRDLVYCSNWISEDISVIDRKTKLEIRK  249 (433)
T ss_dssp             ---SEEEE------------------------------EEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ---CeeEE------------------------------EEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence               24455                              999999876 5666899999999999887764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.53  E-value=5.9e-13  Score=102.90  Aligned_cols=142  Identities=11%  Similarity=-0.018  Sum_probs=90.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcceeEEEeccCC-ce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~   78 (147)
                      +++++.|+.|++||+++++. ...+. .+...+.+++|+|+++.++ +++.|+.|++  ||+++++....+..+... ..
T Consensus       184 ~~s~~~d~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~--~d~~~~~~~~~~~~~~~~~~~  259 (433)
T 3bws_A          184 WVSQMQANAVHVFDLKTLAY-KATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISV--IDRKTKLEIRKTDKIGLPRGL  259 (433)
T ss_dssp             EEEEGGGTEEEEEETTTCCE-EEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEE--EETTTTEEEEECCCCSEEEEE
T ss_pred             EEEECCCCEEEEEECCCceE-EEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEE--EECCCCcEEEEecCCCCceEE
Confidence            47888999999999998753 34443 3445689999999999875 5558999999  777777666555443211 11


Q ss_pred             EEeeccceeeeecC--------CCcceeeeeee-eeee---eeeceEEEEEecCCC-eEEEeCCCCcEEEeecCCceeee
Q 032092           79 TCSVISFTSILAGD--------APKYSSFYKVK-RLHL---FVKSHVIVLFVQIHH-TFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        79 ~~~v~~~~~~~~~~--------~~~~~~~~~~~-~~~~---~~~~~~~~~fspdg~-~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .+....-.+++++.        +..+..+..-. +...   +......++|+|+++ ++++++.|+.|++||+++++.+.
T Consensus       260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~  339 (433)
T 3bws_A          260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK  339 (433)
T ss_dssp             EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE
Confidence            22223322333332        22333333111 1111   122345789999996 56777999999999999887765


Q ss_pred             c
Q 032092          146 V  146 (147)
Q Consensus       146 ~  146 (147)
                      .
T Consensus       340 ~  340 (433)
T 3bws_A          340 S  340 (433)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.46  E-value=7e-13  Score=107.44  Aligned_cols=105  Identities=10%  Similarity=0.061  Sum_probs=82.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC--CCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD--SQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~--~~~~~~~~~~~h~~~~~   78 (147)
                      +++++.|++|.+||..+++. ..++..++  .+..++|+|||+++++++.|++|.+  ||+  .+++.+.++..+.    
T Consensus       152 ~vs~~~d~~V~v~D~~t~~~-~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v--~D~~~~t~~~~~~i~~g~----  222 (543)
T 1nir_A          152 SVTLRDAGQIALVDGDSKKI-VKVIDTGY--AVHISRMSASGRYLLVIGRDARIDM--IDLWAKEPTKVAEIKIGI----  222 (543)
T ss_dssp             EEEEGGGTEEEEEETTTCCE-EEEEECST--TEEEEEECTTSCEEEEEETTSEEEE--EETTSSSCEEEEEEECCS----
T ss_pred             EEEEcCCCeEEEEECCCceE-EEEEecCc--ccceEEECCCCCEEEEECCCCeEEE--EECcCCCCcEEEEEecCC----
Confidence            46778899999999999863 45554333  3789999999999999999999999  565  6666666665322    


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEec----CCCeEEEeCC-CCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQ----IHHTFATAGS-DGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsp----dg~~latg~~-Dg~i~iWd~~~~~~~~~  146 (147)
                        .+..+                              +|+|    ||++|++++. |++|.+||..+++++++
T Consensus       223 --~p~~v------------------------------a~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~  263 (543)
T 1nir_A          223 --EARSV------------------------------ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI  263 (543)
T ss_dssp             --EEEEE------------------------------EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred             --CcceE------------------------------EeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence              23444                              9999    9999999885 89999999999887764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.44  E-value=8.9e-13  Score=104.01  Aligned_cols=106  Identities=17%  Similarity=0.149  Sum_probs=75.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC--ce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG--SE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~--~~   78 (147)
                      |++|+.||+|++||+++++... ... .+...|++++|+|+|++|++|+.||+|++  ||.+ ++...++..|...  .+
T Consensus       165 las~s~Dg~v~iwD~~~~~~~~-~~~-~~~~~v~~v~wspdg~~lasgs~dg~v~i--wd~~-~~~~~~~~~~~~~~~~~  239 (434)
T 2oit_A          165 VAVCLADGSIAVLQVTETVKVC-ATL-PSTVAVTSVCWSPKGKQLAVGKQNGTVVQ--YLPT-LQEKKVIPCPPFYESDH  239 (434)
T ss_dssp             EEEEETTSCEEEEEESSSEEEE-EEE-CGGGCEEEEEECTTSSCEEEEETTSCEEE--ECTT-CCEEEEECCCTTCCTTS
T ss_pred             EEEEECCCeEEEEEcCCCccee-ecc-CCCCceeEEEEcCCCCEEEEEcCCCcEEE--EccC-CcccccccCCcccCCCC
Confidence            5789999999999999875322 222 34567999999999999999999999999  7776 5555555554321  01


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEE-eCCCCc------EEEeecCCc
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFAT-AGSDGA------FNFWDKDSK  141 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~lat-g~~Dg~------i~iWd~~~~  141 (147)
                      ...+.++                              +|+|++.++++ +..||.      +++||+.+.
T Consensus       240 ~~~v~~v------------------------------~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          240 PVRVLDV------------------------------LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CEEEEEE------------------------------EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ceeEEEE------------------------------EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            1123333                              99999877644 334443      899999764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.43  E-value=3.2e-12  Score=99.92  Aligned_cols=139  Identities=12%  Similarity=0.006  Sum_probs=86.8

Q ss_pred             CeEeecCC---eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADR---NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg---~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      |++++.++   .|++||+++++. . .+. .+...+.+++|+|||+.|+ +++.||...||.||+.+++. ..+..|...
T Consensus       193 la~~s~~~~~~~i~~~d~~tg~~-~-~l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~  268 (415)
T 2hqs_A          193 LAYVTFESGRSALVIQTLANGAV-R-QVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN  268 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCE-E-EEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSC
T ss_pred             EEEEEecCCCcEEEEEECCCCcE-E-Eee-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCc
Confidence            46677664   999999998853 2 333 2345689999999999888 66667764444488876554 455555533


Q ss_pred             c--eEEeeccceeeeecCCCc-ceee-eeeee-eeeee----eceEEEEEecCCCeEEEeCCC---CcEEEeecCCcee
Q 032092           77 S--ETCSVISFTSILAGDAPK-YSSF-YKVKR-LHLFV----KSHVIVLFVQIHHTFATAGSD---GAFNFWDKDSKQR  143 (147)
Q Consensus        77 ~--~~~~v~~~~~~~~~~~~~-~~~~-~~~~~-~~~~~----~~~~~~~fspdg~~latg~~D---g~i~iWd~~~~~~  143 (147)
                      .  ..+..+.-.++.++.+++ ..++ +++.. ....+    .....++|+|||++|+.++.+   ..|++||+++++.
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            2  234444443444444332 2222 12211 11111    223468999999999888764   5899999988765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.39  E-value=5.1e-12  Score=98.78  Aligned_cols=95  Identities=13%  Similarity=0.016  Sum_probs=70.1

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCC---eEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG---RVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg---~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      +.|++||+...+ + ..+. .+...+.+++|||||+.|++++.++   .|++  ||+.+++.. .+..|..     .+.+
T Consensus       159 ~~i~i~d~~g~~-~-~~l~-~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~--~d~~tg~~~-~l~~~~~-----~~~~  227 (415)
T 2hqs_A          159 YELRVSDYDGYN-Q-FVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVI--QTLANGAVR-QVASFPR-----HNGA  227 (415)
T ss_dssp             EEEEEEETTSCS-C-EEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEE--EETTTCCEE-EEECCSS-----CEEE
T ss_pred             ceEEEEcCCCCC-C-EEEe-CCCCcceeeEEcCCCCEEEEEEecCCCcEEEE--EECCCCcEE-EeecCCC-----cccC
Confidence            799999998643 2 3332 2345799999999999999999885   8988  777766553 4554543     2334


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCCc--EEEeecCCcee
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDGA--FNFWDKDSKQR  143 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg~--i~iWd~~~~~~  143 (147)
                      .                              +|+|||+.|| +++.|+.  |++||+++++.
T Consensus       228 ~------------------------------~~spdg~~la~~~~~~g~~~i~~~d~~~~~~  259 (415)
T 2hqs_A          228 P------------------------------AFSPDGSKLAFALSKTGSLNLYVMDLASGQI  259 (415)
T ss_dssp             E------------------------------EECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             E------------------------------EEcCCCCEEEEEEecCCCceEEEEECCCCCE
Confidence            4                              9999999877 7766665  99999988765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.37  E-value=1.4e-11  Score=91.97  Aligned_cols=105  Identities=10%  Similarity=0.008  Sum_probs=75.8

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcc-eeEEEeccCCceE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSK-NFTFKCHRDGSET   79 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~-~~~~~~h~~~~~~   79 (147)
                      ++++.++.|++||+.+++. ...+..+. .++ .++|+|||+++++++. ++.|.+  ||..+++. ...+..+..    
T Consensus        14 v~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~-~~~~s~dg~~l~~~~~~~~~i~~--~d~~~~~~~~~~~~~~~~----   84 (331)
T 3u4y_A           14 VVEQHLRRISFFSTDTLEI-LNQITLGY-DFV-DTAITSDCSNVVVTSDFCQTLVQ--IETQLEPPKVVAIQEGQS----   84 (331)
T ss_dssp             EEEGGGTEEEEEETTTCCE-EEEEECCC-CEE-EEEECSSSCEEEEEESTTCEEEE--EECSSSSCEEEEEEECSS----
T ss_pred             EEecCCCeEEEEeCcccce-eeeEEccC-Ccc-eEEEcCCCCEEEEEeCCCCeEEE--EECCCCceeEEecccCCC----
Confidence            6778899999999999864 34443332 345 9999999997666555 889988  77776666 555544432    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC---cEEEeecCCceeeec
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG---AFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg---~i~iWd~~~~~~~~~  146 (147)
                       +...+                              +|+|||++|+++..++   .|.+||+++++.+.+
T Consensus        85 -~~~~~------------------------------~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A           85 -SMADV------------------------------DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             -CCCCE------------------------------EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred             -Cccce------------------------------EECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence             22225                              9999999988665553   899999999887654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.36  E-value=2.1e-11  Score=98.74  Aligned_cols=141  Identities=12%  Similarity=0.088  Sum_probs=88.6

Q ss_pred             CeEeecCCeEEEEEC--CCCccceeEecCCCCcceEEEEEcc----CCCEEEEEe-eCCeEEEEeecCCCCcceeEEEec
Q 032092            1 MVVGTADRNLVVFNL--QNPQTEFKRINSPLKYQMRCVAAFP----DQQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKCH   73 (147)
Q Consensus         1 l~~gs~dg~v~iwdi--~~~~~~~~~~~~~~~~~i~~la~sp----dg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~h   73 (147)
                      |++++.|++|++||+  .+++ ...++..  ...++.++|+|    ||+++++++ .+++|.+  ||..+++.+.++..+
T Consensus       193 l~v~~~d~~V~v~D~~~~t~~-~~~~i~~--g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v--~D~~t~~~~~~i~~~  267 (543)
T 1nir_A          193 LLVIGRDARIDMIDLWAKEPT-KVAEIKI--GIEARSVESSKFKGYEDRYTIAGAYWPPQFAI--MDGETLEPKQIVSTR  267 (543)
T ss_dssp             EEEEETTSEEEEEETTSSSCE-EEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEESSEEEE--EETTTCCEEEEEECC
T ss_pred             EEEECCCCeEEEEECcCCCCc-EEEEEec--CCCcceEEeCCCcCCCCCEEEEEEccCCeEEE--Eeccccccceeeccc
Confidence            467889999999999  7764 3444542  23579999999    999998887 5899999  787778877777542


Q ss_pred             c----------C-Cc--eEEeeccceeeeecCCC-cceeeee--eeeee-eeee---ceEEEEEecCCCeEE-EeCCCCc
Q 032092           74 R----------D-GS--ETCSVISFTSILAGDAP-KYSSFYK--VKRLH-LFVK---SHVIVLFVQIHHTFA-TAGSDGA  132 (147)
Q Consensus        74 ~----------~-~~--~~~~v~~~~~~~~~~~~-~~~~~~~--~~~~~-~~~~---~~~~~~fspdg~~la-tg~~Dg~  132 (147)
                      .          . ..  .......-.++.+..++ .+.++.-  .+... ..+.   .-..++|+|||++|+ ++..|++
T Consensus       268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~  347 (543)
T 1nir_A          268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK  347 (543)
T ss_dssp             EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred             CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe
Confidence            1          1 10  11111111223333333 3333321  11010 1111   113579999999765 4556899


Q ss_pred             EEEeecCCceeeec
Q 032092          133 FNFWDKDSKQRLKV  146 (147)
Q Consensus       133 i~iWd~~~~~~~~~  146 (147)
                      |.+||+++++++.+
T Consensus       348 v~v~D~~tg~l~~~  361 (543)
T 1nir_A          348 VAVIDSKDRRLSAL  361 (543)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEECCCCeEEEe
Confidence            99999999988764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.35  E-value=1.5e-11  Score=91.34  Aligned_cols=113  Identities=12%  Similarity=-0.016  Sum_probs=79.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCc-ceEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKY-QMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~-~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |++++.++.|++||+.+++. ...+..+... .+..++|+|||+.+ +++..++.|.+  ||+.+++...++........
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~--~d~~~~~~~~~~~~~~~~~~   80 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK--IDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEE-EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEE--EETTTCCEEEEEECCBTTEE
T ss_pred             EEEcCCCCeEEEEECCCCcE-EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEE--EECCCCCeEeeEEcCCcccc
Confidence            57889999999999998853 3444333211 37899999999865 55666889999  78777776665542111001


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC------------CCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG------------SDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~------------~Dg~i~iWd~~~~~~~~~  146 (147)
                      ...+..+                              +|+|||++|+.++            .|+.|.+||+++++.+..
T Consensus        81 ~~~~~~~------------------------------~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~  130 (337)
T 1pby_B           81 VKSLFGA------------------------------ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA  130 (337)
T ss_dssp             EECTTCE------------------------------EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred             cccccce------------------------------EECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEE
Confidence            1123444                              9999999888886            579999999998877653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.34  E-value=1.4e-11  Score=92.11  Aligned_cols=109  Identities=16%  Similarity=0.143  Sum_probs=76.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCcceeEEEeccC-Cce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNFTFKCHRD-GSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~-~~~   78 (147)
                      +++++.+++|++||+.+++. ...+..+....+..++|+|||+.+ +++..++.|.+  ||+.+++....+..+.. ...
T Consensus        14 ~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~--~d~~t~~~~~~~~~~~~~~~~   90 (349)
T 1jmx_B           14 MIVTNYPNNLHVVDVASDTV-YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG--IDLDTCKNTFHANLSSVPGEV   90 (349)
T ss_dssp             EEEEETTTEEEEEETTTTEE-EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE--EETTTTEEEEEEESCCSTTEE
T ss_pred             EEEeCCCCeEEEEECCCCcE-EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEE--EeCCCCcEEEEEEcccccccc
Confidence            46788999999999998853 344443322247899999999865 45567899999  78777766655542211 000


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCC------------CcEEEeecCCce
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSD------------GAFNFWDKDSKQ  142 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~D------------g~i~iWd~~~~~  142 (147)
                      ...+..+                              +|+|||++|++++.+            +.|.+||+++++
T Consensus        91 ~~~~~~~------------------------------~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  136 (349)
T 1jmx_B           91 GRSMYSF------------------------------AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  136 (349)
T ss_dssp             EECSSCE------------------------------EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             cccccce------------------------------EECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence            1124455                              999999999998866            899999998744

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.32  E-value=1.1e-11  Score=92.22  Aligned_cols=100  Identities=13%  Similarity=0.112  Sum_probs=67.8

Q ss_pred             eEeecCCeEEEEECCC-Cc-cceeEecCCCCcceEEEEEccCCCEEEEEeeC-CeEEEEeecCCCCcc--eeEEEeccCC
Q 032092            2 VVGTADRNLVVFNLQN-PQ-TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE-GRVGVHHLDDSQQSK--NFTFKCHRDG   76 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~-~~-~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d-g~i~i~~~d~~~~~~--~~~~~~h~~~   76 (147)
                      ++++.|+.|++||+.. ++ +....+.  +...+.+++|+|+|+++++++.+ +.|.+|+++..+++.  +..+..+.  
T Consensus         9 ~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--   84 (343)
T 1ri6_A            9 IASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG--   84 (343)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS--
T ss_pred             EeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC--
Confidence            3447899999999963 32 1222222  33468899999999998888876 999997776544442  22332221  


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-CCCcEEEeecC
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-SDGAFNFWDKD  139 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~Dg~i~iWd~~  139 (147)
                          .+..+                              +|+|+|++|+.++ .++.|++||+.
T Consensus        85 ----~~~~~------------------------------~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           85 ----SLTHI------------------------------STDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             ----CCSEE------------------------------EECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ----CCcEE------------------------------EEcCCCCEEEEEecCCCeEEEEECC
Confidence                23444                              9999998775554 58899999993

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.30  E-value=9.5e-11  Score=87.75  Aligned_cols=107  Identities=12%  Similarity=0.089  Sum_probs=78.9

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCc--------ceEEEEEccCCCEEEEEe--eCCeEEEEeecCCCCcceeEEE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKY--------QMRCVAAFPDQQGFWVGS--IEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~--------~i~~la~spdg~~l~~g~--~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      +++..++.|.+||+.+++. ...+..+...        .+.+++|+|+|+.+++++  .++.|.+  ||..+++....+.
T Consensus       105 v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~--~d~~~~~~~~~~~  181 (353)
T 3vgz_A          105 FGNTVNSAVTAIDAKTGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV--VDGGNIKLKTAIQ  181 (353)
T ss_dssp             EEETTTTEEEEEETTTCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE--EETTTTEEEEEEC
T ss_pred             EEecCCCEEEEEeCCCCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE--EcCCCCceEEEec
Confidence            3445679999999999863 3334322111        268899999999877776  4788988  7887777766665


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+..     .+..+                              +|+|||++|+.++.|+.|.+||..+++.+.+
T Consensus       182 ~~~~-----~~~~~------------------------------~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~  221 (353)
T 3vgz_A          182 NTGK-----MSTGL------------------------------ALDSEGKRLYTTNADGELITIDTADNKILSR  221 (353)
T ss_dssp             CCCT-----TCCCC------------------------------EEETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CCCC-----ccceE------------------------------EECCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence            3322     24555                              9999999999999999999999999887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.29  E-value=3.8e-11  Score=89.12  Aligned_cols=97  Identities=11%  Similarity=0.095  Sum_probs=72.4

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceee
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSI   88 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~   88 (147)
                      .|.+||+++++...... .++...+.+++|+|||++++++  ++.|.+  ||..+++....+..+.      .+.++   
T Consensus       220 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~--~~~v~~--~d~~~~~~~~~~~~~~------~~~~~---  285 (337)
T 1pby_B          220 GLLTMDLETGEMAMREV-RIMDVFYFSTAVNPAKTRAFGA--YNVLES--FDLEKNASIKRVPLPH------SYYSV---  285 (337)
T ss_dssp             EEEEEETTTCCEEEEEE-EECSSCEEEEEECTTSSEEEEE--ESEEEE--EETTTTEEEEEEECSS------CCCEE---
T ss_pred             ceEEEeCCCCCceEeec-CCCCCceeeEEECCCCCEEEEe--CCeEEE--EECCCCcCcceecCCC------ceeeE---
Confidence            57999999986421111 1233457889999999999888  699999  7777666665554322      23444   


Q ss_pred             eecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           89 LAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                                                 +|+|||++|++++.|+.|++||+++++.+.+
T Consensus       286 ---------------------------~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~  316 (337)
T 1pby_B          286 ---------------------------NVSTDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             ---------------------------EECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             ---------------------------EECCCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence                                       9999999999999999999999999887764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.26  E-value=6.9e-10  Score=83.56  Aligned_cols=143  Identities=11%  Similarity=0.056  Sum_probs=80.8

Q ss_pred             eEeecCCeEEEEECC-CCccc-eeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCCCCcce--eEEEeccCC
Q 032092            2 VVGTADRNLVVFNLQ-NPQTE-FKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKN--FTFKCHRDG   76 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~-~~~~~-~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~--~~~~~h~~~   76 (147)
                      +++..++.|++||+. +++.. ......+....++.++|+|||+++++ +..++.|.+|+++..+++..  ..+......
T Consensus       156 v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  235 (347)
T 3hfq_A          156 VIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD  235 (347)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT
T ss_pred             EEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC
Confidence            445568899999998 44311 11112222235788999999996554 66789999977776444432  222222110


Q ss_pred             --------ceEEeeccceeeeec-CCCcceeeeee----eeeeeeeec----eEEEEEecCCCeEEEeCC-CCcEEEe--
Q 032092           77 --------SETCSVISFTSILAG-DAPKYSSFYKV----KRLHLFVKS----HVIVLFVQIHHTFATAGS-DGAFNFW--  136 (147)
Q Consensus        77 --------~~~~~v~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~----~~~~~fspdg~~latg~~-Dg~i~iW--  136 (147)
                              ...+..+.-.+.+++ .+..+.++..-    .+....+..    ...++|+|||++|++++. ++.|.+|  
T Consensus       236 ~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence                    122333333333333 33444443311    012222322    357899999998877766 4899999  


Q ss_pred             ecCCceee
Q 032092          137 DKDSKQRL  144 (147)
Q Consensus       137 d~~~~~~~  144 (147)
                      |.+++++.
T Consensus       316 d~~tg~l~  323 (347)
T 3hfq_A          316 DLTSGKLS  323 (347)
T ss_dssp             CTTTCCEE
T ss_pred             eCCCCeEE
Confidence            55666654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.26  E-value=2.2e-10  Score=85.36  Aligned_cols=138  Identities=13%  Similarity=0.012  Sum_probs=84.2

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCC---eEEEEeecCCCCcceeEEEeccCC-ce
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG---RVGVHHLDDSQQSKNFTFKCHRDG-SE   78 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg---~i~i~~~d~~~~~~~~~~~~h~~~-~~   78 (147)
                      ++..++.|.+||+.+++.....+. .+..+..+++|+|||++++++..++   .|.+  ||..+++....+..+... ..
T Consensus        57 ~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v--~d~~~~~~~~~~~~~~~~~~~  133 (331)
T 3u4y_A           57 TSDFCQTLVQIETQLEPPKVVAIQ-EGQSSMADVDITPDDQFAVTVTGLNHPFNMQS--YSFLKNKFISTIPIPYDAVGI  133 (331)
T ss_dssp             EESTTCEEEEEECSSSSCEEEEEE-ECSSCCCCEEECTTSSEEEECCCSSSSCEEEE--EETTTTEEEEEEECCTTEEEE
T ss_pred             EeCCCCeEEEEECCCCceeEEecc-cCCCCccceEECCCCCEEEEecCCCCcccEEE--EECCCCCeEEEEECCCCccce
Confidence            344488999999998864233333 2233444499999999998766663   8999  777777766666543221 12


Q ss_pred             EEeeccceeeeecCC-Cc-ceeeee-----eeee-eeee---eceEEEEEecCCCe-EEEeCCCCcEEEeecCCcee
Q 032092           79 TCSVISFTSILAGDA-PK-YSSFYK-----VKRL-HLFV---KSHVIVLFVQIHHT-FATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~-~~-~~~~~~-----~~~~-~~~~---~~~~~~~fspdg~~-latg~~Dg~i~iWd~~~~~~  143 (147)
                      .+..+.-.+++++.+ .. +..+..     +... ...+   .+...++|+|||++ ++++..++.|++||+++++.
T Consensus       134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            333333234444333 34 443331     1111 1111   23457899999985 56666789999999998876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.25  E-value=2.8e-10  Score=85.14  Aligned_cols=106  Identities=14%  Similarity=0.165  Sum_probs=76.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC---CCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS---PLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~---~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      |++++.++.|.+||+.+++. ...+..   .....+..++|+|||+++++++. ++.|.+  ||..+++....+....  
T Consensus       199 l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~--~d~~~~~~~~~~~~~~--  273 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLV--VDTRNGNILAKVAAPE--  273 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEE--EETTTCCEEEEEECSS--
T ss_pred             EEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEE--EECCCCcEEEEEEcCC--
Confidence            45677899999999999864 333332   12334788999999997766654 599999  7887777666554321  


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCe-EEEeCCCCcEEEeecCCceeeec
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHT-FATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~-latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                           ...+                              +|+|||++ +++...++.|.+||.++++.+.+
T Consensus       274 -----~~~~------------------------------~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~  309 (353)
T 3vgz_A          274 -----SLAV------------------------------LFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT  309 (353)
T ss_dssp             -----CCCE------------------------------EEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             -----CceE------------------------------EECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence                 1234                              99999984 55666799999999999887654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.25  E-value=7.5e-11  Score=101.43  Aligned_cols=102  Identities=8%  Similarity=0.084  Sum_probs=78.6

Q ss_pred             eEeecCCeEE-EEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            2 VVGTADRNLV-VFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         2 ~~gs~dg~v~-iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ++++.++.+. +||+.+++.  ..+. .+...+.+++|||||++|++++.++.|++  ||+.+++....+.+|..     
T Consensus       352 ~~~s~~~~l~~~~d~~~~~~--~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~--~d~~tg~~~~~~~~~~~-----  421 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGKA--EKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMT--VDLETGKPTVIERSREA-----  421 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCCE--EECC-CCCCSEEEEEECTTSSEEEEEETTSEEEE--EETTTCCEEEEEECSSS-----
T ss_pred             EEEECCCceEEEEECCCCCc--eEec-CCccceeeeEECCCCCEEEEECCCCeEEE--EECCCCceEEeccCCCC-----
Confidence            5566677888 899987642  2333 44456899999999999999999999999  77777766655556653     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC----------cEEEeecCCcee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG----------AFNFWDKDSKQR  143 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg----------~i~iWd~~~~~~  143 (147)
                      .+.++                              +|||||++||+++.++          .|++||+.+++.
T Consensus       422 ~v~~~------------------------------~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~  464 (1045)
T 1k32_A          422 MITDF------------------------------TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  464 (1045)
T ss_dssp             CCCCE------------------------------EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             Cccce------------------------------EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence            34555                              9999999999887654          899999988763

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.24  E-value=6.2e-11  Score=85.88  Aligned_cols=95  Identities=13%  Similarity=0.010  Sum_probs=66.7

Q ss_pred             eecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC-CcceeEEEeccCCceEEee
Q 032092            4 GTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~~~~~~v   82 (147)
                      ++.|++|++||+.+++. ....  .+...+.+++|+|||++|++++ ++.|.+  ||..+ ++....+..|...    .+
T Consensus        18 ~~~~~~i~~~d~~~~~~-~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~--~d~~~~~~~~~~~~~~~~~----~~   87 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKM-RVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYR--LSLAGDPSPEKVDTGFATI----CN   87 (297)
T ss_dssp             CCCCEEEEEEETTTTEE-EEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEE--EESSSCCSCEECCCTTCCC----BC
T ss_pred             CCcceeEEEEeCCCCce-eeec--cCCcceEeeEECCCCCEEEEEc-CCeEEE--EeCCCCCCceEeccccccc----cc
Confidence            46789999999998753 2222  2345799999999999999976 889999  67665 5554333333211    35


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC--CCCcEEEeec
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG--SDGAFNFWDK  138 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~--~Dg~i~iWd~  138 (147)
                      ..+                              +|+|||++|++++  .|+..+||..
T Consensus        88 ~~~------------------------------~~spdg~~l~~~~~~~~~~~~l~~~  115 (297)
T 2ojh_A           88 NDH------------------------------GISPDGALYAISDKVEFGKSAIYLL  115 (297)
T ss_dssp             SCC------------------------------EECTTSSEEEEEECTTTSSCEEEEE
T ss_pred             cce------------------------------EECCCCCEEEEEEeCCCCcceEEEE
Confidence            556                              9999999999988  3345555544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.23  E-value=4.3e-11  Score=98.67  Aligned_cols=104  Identities=13%  Similarity=0.021  Sum_probs=72.5

Q ss_pred             CeEeec-CC-----eEEEEECCCCccceeEecCC-CC----------------------cceEEEEEccCCCEEEEEeeC
Q 032092            1 MVVGTA-DR-----NLVVFNLQNPQTEFKRINSP-LK----------------------YQMRCVAAFPDQQGFWVGSIE   51 (147)
Q Consensus         1 l~~gs~-dg-----~v~iwdi~~~~~~~~~~~~~-~~----------------------~~i~~la~spdg~~l~~g~~d   51 (147)
                      |++++. |+     .|++||+.+++. ....... ..                      ..+.+++|||||++|++++. 
T Consensus        51 la~~~~~d~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-  128 (741)
T 2ecf_A           51 VTFLRGKDSDRNQLDLWSYDIGSGQT-RLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-  128 (741)
T ss_dssp             EEEEECCSSCTTEEEEEEEETTTCCE-EEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-
T ss_pred             EEEEeccCCCCcccEEEEEECCCCce-eEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-
Confidence            466776 77     999999998853 2222211 11                      23789999999999999886 


Q ss_pred             CeEEEEeecCCCCc--ceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC
Q 032092           52 GRVGVHHLDDSQQS--KNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS  129 (147)
Q Consensus        52 g~i~i~~~d~~~~~--~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~  129 (147)
                      ++|.+  ||+.++.  ....+..|..     .+...                              +|||||++||.++ 
T Consensus       129 ~~i~~--~d~~~~~~~~~~~l~~~~~-----~~~~~------------------------------~~SPDG~~la~~~-  170 (741)
T 2ecf_A          129 GELYL--YDLKQEGKAAVRQLTHGEG-----FATDA------------------------------KLSPKGGFVSFIR-  170 (741)
T ss_dssp             TEEEE--EESSSCSTTSCCBCCCSSS-----CEEEE------------------------------EECTTSSEEEEEE-
T ss_pred             CcEEE--EECCCCCcceEEEcccCCc-----ccccc------------------------------cCCCCCCEEEEEe-
Confidence            99999  6665552  3333443432     13333                              9999999999986 


Q ss_pred             CCcEEEeecCCceee
Q 032092          130 DGAFNFWDKDSKQRL  144 (147)
Q Consensus       130 Dg~i~iWd~~~~~~~  144 (147)
                      ++.|++||+.+++..
T Consensus       171 ~~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          171 GRNLWVIDLASGRQM  185 (741)
T ss_dssp             TTEEEEEETTTTEEE
T ss_pred             CCcEEEEecCCCCEE
Confidence            568999999887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.22  E-value=6.6e-11  Score=85.76  Aligned_cols=104  Identities=11%  Similarity=0.001  Sum_probs=71.7

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      +++.++.++||++.........+. .+...+.+++|+|+|+.+++++ .++.++||.++... .....+..|..     .
T Consensus       146 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-----~  218 (297)
T 2ojh_A          146 CGIRDQVFDIYSMDIDSGVETRLT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-SSVERITDSAY-----G  218 (297)
T ss_dssp             EEEETTEEEEEEEETTTCCEEECC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SCEEECCCCSE-----E
T ss_pred             EECCCCceEEEEEECCCCcceEcc-cCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-CCcEEEecCCc-----c
Confidence            677899999999643222222332 2345689999999999888766 48999998777543 33334433321     2


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCC-----------CcEEEeecCCcee
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSD-----------GAFNFWDKDSKQR  143 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~D-----------g~i~iWd~~~~~~  143 (147)
                      +..+                              +|+|+|++|+.++.|           +.|++||+++++.
T Consensus       219 ~~~~------------------------------~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          219 DWFP------------------------------HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEEE------------------------------EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             cCCe------------------------------EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            3333                              999999999888876           5699999988654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.22  E-value=4.3e-11  Score=96.52  Aligned_cols=108  Identities=10%  Similarity=-0.001  Sum_probs=74.3

Q ss_pred             eEeecC----CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCC--eEEEEeecCCCCcceeEEEeccC
Q 032092            2 VVGTAD----RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG--RVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         2 ~~gs~d----g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg--~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      ++++.+    +.|++||+.+++.  ..+. .+...+.+++|||||+.|+++..+|  +|++  ||..+++.. .+.+|..
T Consensus       165 a~~~~~~~~~~~i~~~d~~~g~~--~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~--~d~~~~~~~-~~~~~~~  238 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLSSGGL--RVFD-SGEGSFSSASISPGMKVTAGLETAREARLVT--VDPRDGSVE-DLELPSK  238 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCC--EEEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEE--ECTTTCCEE-ECCCSCS
T ss_pred             EEEEEcCCCCeEEEEEcCCCCCc--eEee-cCCCccccceECCCCCEEEEccCCCeeEEEE--EcCCCCcEE-EccCCCc
Confidence            445555    7899999998753  2343 3445689999999999999888899  6666  787766655 4444432


Q ss_pred             CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                           .+.+..    +                  .+.....|+|||+++++++.|+.++||++  ++.+
T Consensus       239 -----~~~~~~----~------------------~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          239 -----DFSSYR----P------------------TAITWLGYLPDGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             -----HHHHHC----C------------------SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred             -----Chhhhh----h------------------ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence                 122220    0                  00001149999999999999999999998  5544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.21  E-value=7.7e-11  Score=87.64  Aligned_cols=105  Identities=12%  Similarity=0.069  Sum_probs=68.3

Q ss_pred             CeEeecC-CeEEEEECC--CCcc-ceeEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecC-CCCcceeEEEecc
Q 032092            1 MVVGTAD-RNLVVFNLQ--NPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDD-SQQSKNFTFKCHR   74 (147)
Q Consensus         1 l~~gs~d-g~v~iwdi~--~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~-~~~~~~~~~~~h~   74 (147)
                      |++++.+ +.|++||+.  +++. .+..+.. . ..+..++|+|+|+++++++ .++.|.+|+.+. ...+....+..+.
T Consensus        52 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  129 (343)
T 1ri6_A           52 LYVGVRPEFRVLAYRIAPDDGALTFAAESAL-P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD  129 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEEEEEEEC-S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT
T ss_pred             EEEeecCCCeEEEEEecCCCCceeecccccc-C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC
Confidence            3555555 999999998  4432 1222322 1 2578999999999876665 489999955531 1122222222221


Q ss_pred             CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-CCCcEEEeecCC-cee
Q 032092           75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-SDGAFNFWDKDS-KQR  143 (147)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~Dg~i~iWd~~~-~~~  143 (147)
                            .+..+                              +|+|+|++|++++ .|+.|++||+.+ ++.
T Consensus       130 ------~~~~~------------------------------~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A          130 ------GCHSA------------------------------NISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             ------TBCCC------------------------------EECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             ------CceEE------------------------------EECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence                  24455                              9999998777776 899999999987 543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.20  E-value=2.5e-11  Score=99.93  Aligned_cols=100  Identities=14%  Similarity=0.165  Sum_probs=71.0

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCc---ceEEEEEccCCCEEEEEee---------CCeEEEEeecCCCCcce--
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKY---QMRCVAAFPDQQGFWVGSI---------EGRVGVHHLDDSQQSKN--   67 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~---~i~~la~spdg~~l~~g~~---------dg~i~i~~~d~~~~~~~--   67 (147)
                      +..+.|++|++||+.+++. .... ..+..   .+.+++|||||++|+.++.         +++|++  ||+.+++..  
T Consensus        30 ~~~~~d~~i~~~~~~~g~~-~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~--~d~~~g~~~~~  105 (719)
T 1z68_A           30 LHQSADNNIVLYNIETGQS-YTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI--YDLSNGEFVRG  105 (719)
T ss_dssp             EEECTTSCEEEEESSSCCE-EEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE--EETTTTEECCS
T ss_pred             EEEcCCCCEEEEEcCCCcE-EEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE--EECCCCccccc
Confidence            3445799999999999863 2222 22211   3889999999999998877         788988  676655431  


Q ss_pred             eEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           68 FTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        68 ~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      ..+.   .     .+...                              +|||||+.||.+. |+.|++||+.+++..
T Consensus       106 ~~l~---~-----~~~~~------------------------------~~SPDG~~la~~~-~~~i~~~~~~~g~~~  143 (719)
T 1z68_A          106 NELP---R-----PIQYL------------------------------CWSPVGSKLAYVY-QNNIYLKQRPGDPPF  143 (719)
T ss_dssp             SCCC---S-----SBCCE------------------------------EECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred             eecC---c-----ccccc------------------------------eECCCCCEEEEEE-CCeEEEEeCCCCCcE
Confidence            1111   0     13344                              9999999999985 889999999877643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.18  E-value=2.8e-11  Score=99.38  Aligned_cols=103  Identities=8%  Similarity=-0.033  Sum_probs=71.6

Q ss_pred             eecCCeEEEEECCCCccceeEecCCCCc---ceEEEEEccCCCEEEEEeeC---------CeEEEEeecCCCCcceeEEE
Q 032092            4 GTADRNLVVFNLQNPQTEFKRINSPLKY---QMRCVAAFPDQQGFWVGSIE---------GRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~---~i~~la~spdg~~l~~g~~d---------g~i~i~~~d~~~~~~~~~~~   71 (147)
                      .+.||+|++||+.+++. ...+. .+..   .+.+++|||||++|++++.+         +.+.+  ||+.+++. ..+.
T Consensus        33 ~~~dg~i~~~d~~~g~~-~~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~--~d~~~~~~-~~l~  107 (723)
T 1xfd_A           33 REQKGTVRLWNVETNTS-TVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL--SKIPHGDP-QSLD  107 (723)
T ss_dssp             CCSSSCEEEBCGGGCCC-EEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE--EESSSCCC-EECC
T ss_pred             EeCCCCEEEEECCCCcE-EEEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEEE--EECCCCce-Eecc
Confidence            36789999999999864 23332 2222   38999999999999998775         67778  66665544 2332


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      .+..  ....+...                              +|||||+.||.++. +.|++||+.+++..
T Consensus       108 ~~~~--~~~~~~~~------------------------------~~SPdG~~la~~~~-~~i~~~~~~~g~~~  147 (723)
T 1xfd_A          108 PPEV--SNAKLQYA------------------------------GWGPKGQQLIFIFE-NNIYYCAHVGKQAI  147 (723)
T ss_dssp             CTTC--CSCCCSBC------------------------------CBCSSTTCEEEEET-TEEEEESSSSSCCE
T ss_pred             CCcc--cccccccc------------------------------EECCCCCEEEEEEC-CeEEEEECCCCceE
Confidence            2111  00013444                              99999999999875 79999999887654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.17  E-value=1.4e-10  Score=93.57  Aligned_cols=96  Identities=7%  Similarity=-0.145  Sum_probs=68.4

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC----CeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE----GRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d----g~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      .++.+.|||+.+++.  ..+....   -.+++|||||+.+++++.+    +.|++  ||+.+++. ..+..|..     .
T Consensus       130 ~~~~~~l~d~~~g~~--~~l~~~~---~~~~~~spDG~~la~~~~~~~~~~~i~~--~d~~~g~~-~~l~~~~~-----~  196 (582)
T 3o4h_A          130 TEDRVALYALDGGGL--RELARLP---GFGFVSDIRGDLIAGLGFFGGGRVSLFT--SNLSSGGL-RVFDSGEG-----S  196 (582)
T ss_dssp             CSSCEEEEEEETTEE--EEEEEES---SCEEEEEEETTEEEEEEEEETTEEEEEE--EETTTCCC-EEECCSSC-----E
T ss_pred             CCCCceEEEccCCcE--EEeecCC---CceEEECCCCCEEEEEEEcCCCCeEEEE--EcCCCCCc-eEeecCCC-----c
Confidence            344455999998753  2232211   2789999999999988877    66766  77766554 35555543     2


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC--cEEEeecCCceee
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG--AFNFWDKDSKQRL  144 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg--~i~iWd~~~~~~~  144 (147)
                      +.+.                              +|||||++|++++.|+  .|++||+++++..
T Consensus       197 ~~~~------------------------------~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          197 FSSA------------------------------SISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EEEE------------------------------EECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             cccc------------------------------eECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            3344                              9999999999888898  8999999887654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.16  E-value=4.4e-09  Score=79.59  Aligned_cols=140  Identities=9%  Similarity=-0.043  Sum_probs=79.2

Q ss_pred             EeecCCeEEEEECCCCcc------ce-----eEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCCcc--ee
Q 032092            3 VGTADRNLVVFNLQNPQT------EF-----KRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQSK--NF   68 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~------~~-----~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~~~--~~   68 (147)
                      ++..++.|++|++.....      ..     .....+....++.++|+|||+++++++ .+++|.+|+++  +++.  ..
T Consensus       172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~--~g~~~~~~  249 (361)
T 3scy_A          172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA--DGMLDEIQ  249 (361)
T ss_dssp             EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE--TTEEEEEE
T ss_pred             EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec--CCceEEeE
Confidence            344588999999876431      10     112222234578999999999877766 69999995554  4432  22


Q ss_pred             EEEeccC---C--ceEEeeccceeeeecCC--Ccceeeeee-e--e--eeeeee---ceEEEEEecCCCeEEEeC-CCCc
Q 032092           69 TFKCHRD---G--SETCSVISFTSILAGDA--PKYSSFYKV-K--R--LHLFVK---SHVIVLFVQIHHTFATAG-SDGA  132 (147)
Q Consensus        69 ~~~~h~~---~--~~~~~v~~~~~~~~~~~--~~~~~~~~~-~--~--~~~~~~---~~~~~~fspdg~~latg~-~Dg~  132 (147)
                      .+.....   .  ...+..+.-.+.++.+.  ..+.++.-- .  +  ....+.   ....++|+|||++|++++ .++.
T Consensus       250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~  329 (361)
T 3scy_A          250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNV  329 (361)
T ss_dssp             EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTE
T ss_pred             EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCC
Confidence            2322211   1  12333444334455444  334443310 0  1  111222   234689999999887777 5789


Q ss_pred             EEEe--ecCCceee
Q 032092          133 FNFW--DKDSKQRL  144 (147)
Q Consensus       133 i~iW--d~~~~~~~  144 (147)
                      |.+|  |.+++++.
T Consensus       330 v~v~~~d~~~g~~~  343 (361)
T 3scy_A          330 IQIFERDQATGLLT  343 (361)
T ss_dssp             EEEEEECTTTCCEE
T ss_pred             EEEEEEECCCCcEe
Confidence            9995  55566654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.14  E-value=4.4e-10  Score=83.83  Aligned_cols=103  Identities=16%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCC-----CcceEEEEEccCCCEEEEEeeC------------CeEEEEeecCCCC
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPL-----KYQMRCVAAFPDQQGFWVGSIE------------GRVGVHHLDDSQQ   64 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~-----~~~i~~la~spdg~~l~~g~~d------------g~i~i~~~d~~~~   64 (147)
                      +++..++.|.+||+.+++. ...+..+.     ...+..++|+|||+++++++.+            +.|.+  ||+.++
T Consensus        59 v~~~~~~~i~~~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~--~d~~~~  135 (349)
T 1jmx_B           59 VLNNHYGDIYGIDLDTCKN-TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV--FSTADG  135 (349)
T ss_dssp             EEETTTTEEEEEETTTTEE-EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE--EEGGGG
T ss_pred             EEeCCCCcEEEEeCCCCcE-EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEE--EECCCc
Confidence            3455789999999998753 33333221     1236889999999999998876            89999  666553


Q ss_pred             cc---eeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           65 SK---NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        65 ~~---~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      +.   ...+..+.      .+.++                              +|+|||+ ++.++.  .|++||.+++
T Consensus       136 ~~~~~~~~~~~~~------~~~~~------------------------------~~s~dg~-l~~~~~--~i~~~d~~~~  176 (349)
T 1jmx_B          136 LEAKPVRTFPMPR------QVYLM------------------------------RAADDGS-LYVAGP--DIYKMDVKTG  176 (349)
T ss_dssp             GGBCCSEEEECCS------SCCCE------------------------------EECTTSC-EEEESS--SEEEECTTTC
T ss_pred             cccceeeeccCCC------cccce------------------------------eECCCCc-EEEccC--cEEEEeCCCC
Confidence            32   22332221      24444                              8999999 555544  4999999988


Q ss_pred             eeeec
Q 032092          142 QRLKV  146 (147)
Q Consensus       142 ~~~~~  146 (147)
                      +.+.+
T Consensus       177 ~~~~~  181 (349)
T 1jmx_B          177 KYTVA  181 (349)
T ss_dssp             CEEEE
T ss_pred             ceecc
Confidence            76643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.11  E-value=1.7e-10  Score=94.73  Aligned_cols=59  Identities=5%  Similarity=-0.041  Sum_probs=41.6

Q ss_pred             CCeEEEEECCCCccceeEecC--CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092            7 DRNLVVFNLQNPQTEFKRINS--PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF   70 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~--~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~   70 (147)
                      ++.|++||+.+++.  ..+..  .+...+.+++|||||+.||.++. +.|++  ||..+++.....
T Consensus        90 ~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~--~~~~~g~~~~~~  150 (723)
T 1xfd_A           90 TGYYVLSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYY--CAHVGKQAIRVV  150 (723)
T ss_dssp             CSEEEEEESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEE--ESSSSSCCEEEE
T ss_pred             eeeEEEEECCCCce--EeccCCccccccccccEECCCCCEEEEEEC-CeEEE--EECCCCceEEEe
Confidence            47899999998853  22322  12223788999999999999876 78888  777666554333

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.11  E-value=5.5e-10  Score=91.67  Aligned_cols=106  Identities=13%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             cCCeEEEEECCCCccceeEec-CCCCcceEEEEEccCCCEEEEEeeCC-----eEEEEeecCCCCcceeEEEeccCCceE
Q 032092            6 ADRNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFPDQQGFWVGSIEG-----RVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~spdg~~l~~g~~dg-----~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      .+..|++||+.+++.. .... ..+...+.+++|+|||+.|++++.++     +|.+  ||..+++....+..+......
T Consensus       233 ~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~--~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTV-YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNA--YDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             CEEEEEEEETTTTEEE-ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEE--EETTTCCEEEEEEEEECSSCC
T ss_pred             CeeEEEEEECCCCceE-eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEE--EECCCCceeeEEEEccCCCeE
Confidence            4468999999987531 1111 12334689999999999999988776     7777  787776333333221111000


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEec--CCCeEEEeCCCCcEEEeecC-Cceee
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQ--IHHTFATAGSDGAFNFWDKD-SKQRL  144 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsp--dg~~latg~~Dg~i~iWd~~-~~~~~  144 (147)
                      ..+.++                              +|+|  ||+++++++.||.++||+.+ +++.+
T Consensus       310 ~~~~~~------------------------------~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~  347 (706)
T 2z3z_A          310 EPLHPL------------------------------TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI  347 (706)
T ss_dssp             CCCSCC------------------------------EECTTCSSEEEEEECTTSSCEEEEEETTSCEE
T ss_pred             CccCCc------------------------------eeecCCCCEEEEEEccCCccEEEEEECCCCEE
Confidence            012344                              9999  99999999999999999875 44443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.06  E-value=1e-09  Score=90.49  Aligned_cols=59  Identities=8%  Similarity=0.008  Sum_probs=41.7

Q ss_pred             eEeecCCeEEEEECCCCc--cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092            2 VVGTADRNLVVFNLQNPQ--TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~--~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      ++++. +.|++||+.+++  .. ..+. .+...+.+++|||||++|+.++ ++.|.+  ||..+++.
T Consensus       124 ~~~~~-~~i~~~d~~~~~~~~~-~~l~-~~~~~~~~~~~SPDG~~la~~~-~~~i~~--~d~~~g~~  184 (741)
T 2ecf_A          124 LFPLG-GELYLYDLKQEGKAAV-RQLT-HGEGFATDAKLSPKGGFVSFIR-GRNLWV--IDLASGRQ  184 (741)
T ss_dssp             EEEET-TEEEEEESSSCSTTSC-CBCC-CSSSCEEEEEECTTSSEEEEEE-TTEEEE--EETTTTEE
T ss_pred             EEEeC-CcEEEEECCCCCcceE-EEcc-cCCcccccccCCCCCCEEEEEe-CCcEEE--EecCCCCE
Confidence            44444 899999999872  22 2232 2335689999999999999887 568888  67665543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.06  E-value=5.3e-10  Score=91.74  Aligned_cols=53  Identities=8%  Similarity=-0.012  Sum_probs=39.6

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~   63 (147)
                      +.++.|++||+.+++. .. +.. +...+.+++|||||+.|+.+ .|+.|++  ||+.+
T Consensus        98 ~~~~~i~~~d~~~~~~-~~-l~~-~~~~~~~~~~SpdG~~la~~-~~~~i~v--~~~~~  150 (706)
T 2z3z_A           98 FTQGGLVGFDMLARKV-TY-LFD-TNEETASLDFSPVGDRVAYV-RNHNLYI--ARGGK  150 (706)
T ss_dssp             EETTEEEEEETTTTEE-EE-EEC-CTTCCTTCEECTTSSEEEEE-ETTEEEE--EECBC
T ss_pred             EECCEEEEEECCCCce-EE-ccC-CcccccCCcCCCCCCEEEEE-ECCeEEE--EecCc
Confidence            4679999999998742 22 222 23457889999999999984 7899999  66655

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.04  E-value=7.2e-09  Score=77.04  Aligned_cols=140  Identities=6%  Similarity=-0.053  Sum_probs=88.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-ce-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SE-   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~-   78 (147)
                      |++++.|+.|++||.++++.. -++..+....+.+++++|+|+.|+  +.++.|..  +|+ +++.+.++..+... .. 
T Consensus         8 lv~~~~~~~v~~~d~~tG~~~-w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~--~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            8 LVGGSGWNKIAIINKDTKEIV-WEYPLEKGWECNSVAATKAGEILF--SYSKGAKM--ITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             EEECTTCSEEEEEETTTTEEE-EEEECCTTCCCCEEEECTTSCEEE--ECBSEEEE--ECT-TSCEEEEEECCTTCEEEE
T ss_pred             EEeeCCCCEEEEEECCCCeEE-EEeCCCccCCCcCeEECCCCCEEE--eCCCCEEE--ECC-CCCEEEEEcCCCCccccc
Confidence            578899999999999999753 344322112578999999999888  44778888  888 78888888764221 11 


Q ss_pred             -EEeeccceeeeecC-CCcceeeeeeeeeeeee------ec----eEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 -TCSVISFTSILAGD-APKYSSFYKVKRLHLFV------KS----HVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 -~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~----~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                       ....+.-.+++.+. +..+..+..--+..+.+      .+    ...+++.|+|+++++...++.|..||.+ ++.+.+
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~  160 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS  160 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence             11112222233232 22222222111111111      11    1235788999999999999999999987 888876


Q ss_pred             C
Q 032092          147 F  147 (147)
Q Consensus       147 ~  147 (147)
                      |
T Consensus       161 ~  161 (276)
T 3no2_A          161 V  161 (276)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.03  E-value=1.2e-09  Score=82.22  Aligned_cols=108  Identities=7%  Similarity=0.011  Sum_probs=65.1

Q ss_pred             CCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCCcc--eeEEEeccCCceEEee
Q 032092            7 DRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQSK--NFTFKCHRDGSETCSV   82 (147)
Q Consensus         7 dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~~~--~~~~~~h~~~~~~~~v   82 (147)
                      ++.|++||+.+++. .+.... .+...+..++|+|||++|++++ .+++|.+|+++. ++..  +..+. +....   + 
T Consensus        62 ~~~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~-~g~~~~~~~~~-~~~~~---p-  134 (347)
T 3hfq_A           62 EGGIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA-DGALTLTDTVQ-HSGHG---P-  134 (347)
T ss_dssp             EEEEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT-TSCEEEEEEEE-CCCCC---S-
T ss_pred             CceEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC-CCCeeecceee-cCCCC---C-
Confidence            68999999976642 112211 1223578999999999888877 789999955543 2222  11111 11000   0 


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC-Cce
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD-SKQ  142 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~-~~~  142 (147)
                      ...                     ........++|+|||++++++..++.|++||++ +++
T Consensus       135 ~~~---------------------~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~  174 (347)
T 3hfq_A          135 RPE---------------------QDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ  174 (347)
T ss_dssp             STT---------------------CSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred             Ccc---------------------ccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence            000                     000001124999999988888889999999998 443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.01  E-value=1.2e-09  Score=93.94  Aligned_cols=101  Identities=9%  Similarity=-0.071  Sum_probs=74.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCC----------eEEEEeecCCCCcceeEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG----------RVGVHHLDDSQQSKNFTF   70 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg----------~i~i~~~d~~~~~~~~~~   70 (147)
                      |++++.++.|++||+.+++. .... ..+...+.+++|||||++|++++.++          .|++  ||..+++ ...+
T Consensus       393 la~~~~~~~v~~~d~~tg~~-~~~~-~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l--~d~~~g~-~~~l  467 (1045)
T 1k32_A          393 AVVANDRFEIMTVDLETGKP-TVIE-RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV--YDMEGRK-IFAA  467 (1045)
T ss_dssp             EEEEETTSEEEEEETTTCCE-EEEE-ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE--EETTTTE-EEEC
T ss_pred             EEEECCCCeEEEEECCCCce-EEec-cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE--EECCCCc-EEEe
Confidence            46788999999999998853 2222 23445688999999999999888765          8888  6776554 4444


Q ss_pred             EeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           71 KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        71 ~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      ..|..     .+.+.                              +|+|||++|+.++.++...+|+....
T Consensus       468 ~~~~~-----~~~~~------------------------------~~spdG~~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          468 TTENS-----HDYAP------------------------------AFDADSKNLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             SCSSS-----BEEEE------------------------------EECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             eCCCc-----ccCCc------------------------------eEcCCCCEEEEEecccCCcCcchhcc
Confidence            44432     12233                              99999999999999888888986543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.98  E-value=1.2e-09  Score=89.85  Aligned_cols=53  Identities=6%  Similarity=0.050  Sum_probs=39.5

Q ss_pred             CCeEEEEECCCCccce-eEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092            7 DRNLVVFNLQNPQTEF-KRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~-~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      ++.|++||+.+++... ..+    ...+.+++|||||+.||.+. ++.|++  ||..+++.
T Consensus        89 ~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~~la~~~-~~~i~~--~~~~~g~~  142 (719)
T 1z68_A           89 TATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGSKLAYVY-QNNIYL--KQRPGDPP  142 (719)
T ss_dssp             EEEEEEEETTTTEECCSSCC----CSSBCCEEECSSTTCEEEEE-TTEEEE--ESSTTSCC
T ss_pred             ceEEEEEECCCCccccceec----CcccccceECCCCCEEEEEE-CCeEEE--EeCCCCCc
Confidence            7899999999885310 112    13578999999999999885 789999  77765544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.97  E-value=7.4e-09  Score=78.36  Aligned_cols=105  Identities=10%  Similarity=0.092  Sum_probs=64.0

Q ss_pred             ecCCeEEEEECCCCccce---eEecCC---------CCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCC----c-c
Q 032092            5 TADRNLVVFNLQNPQTEF---KRINSP---------LKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQ----S-K   66 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~---~~~~~~---------~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~----~-~   66 (147)
                      ..++.|.+||+.......   ......         ....+.+++|+|||+++++++ .++.|.+|+++...+    + .
T Consensus       117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l  196 (361)
T 3scy_A          117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKF  196 (361)
T ss_dssp             TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred             CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence            368899999997643211   111100         012357899999999765554 589999977776543    2 1


Q ss_pred             ee-----EEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-CCCcEEEeecCC
Q 032092           67 NF-----TFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-SDGAFNFWDKDS  140 (147)
Q Consensus        67 ~~-----~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~Dg~i~iWd~~~  140 (147)
                      ..     ........    .+..                              ++|+|||++++.++ .++.|.+||+++
T Consensus       197 ~~~~~~~~~~~~~~~----~~~~------------------------------~~~spdg~~l~v~~~~~~~v~v~~~~~  242 (361)
T 3scy_A          197 LTKGTPEAFKVAPGS----GPRH------------------------------LIFNSDGKFAYLINEIGGTVIAFRYAD  242 (361)
T ss_dssp             EEEEEEEEEECCTTC----CEEE------------------------------EEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred             eecccccceecCCCC----CCeE------------------------------EEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence            11     11110000    1222                              39999998776665 689999999987


Q ss_pred             cee
Q 032092          141 KQR  143 (147)
Q Consensus       141 ~~~  143 (147)
                      ++.
T Consensus       243 g~~  245 (361)
T 3scy_A          243 GML  245 (361)
T ss_dssp             TEE
T ss_pred             Cce
Confidence            643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.97  E-value=1.7e-09  Score=90.02  Aligned_cols=98  Identities=12%  Similarity=0.075  Sum_probs=66.2

Q ss_pred             CCeEEEEECCCCccceeEecCCC--Ccce--EEEEEccCCCEEEEEeeC---------CeEEEEeecCCCCcceeEEEec
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPL--KYQM--RCVAAFPDQQGFWVGSIE---------GRVGVHHLDDSQQSKNFTFKCH   73 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~--~~~i--~~la~spdg~~l~~g~~d---------g~i~i~~~d~~~~~~~~~~~~h   73 (147)
                      ||+|++||+.+++. ...+....  ...+  .+++|||||++++.++.+         +.+.+  ||+.+++.. .+..|
T Consensus        35 ~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~--~d~~~~~~~-~l~~~  110 (740)
T 4a5s_A           35 ENNILVFNAEYGNS-SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI--YDLNKRQLI-TEERI  110 (740)
T ss_dssp             TTEEEEEETTTCCE-EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE--EETTTTEEC-CSSCC
T ss_pred             CCcEEEEECCCCce-EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE--EECCCCcEE-EcccC
Confidence            89999999999864 22232211  1122  458999999999999887         44556  777665432 23322


Q ss_pred             cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      ..     .+..                              ++|||||+.||.+ .|+.|++||+.+++..
T Consensus       111 ~~-----~~~~------------------------------~~~SPdG~~la~~-~~~~i~~~~~~~~~~~  145 (740)
T 4a5s_A          111 PN-----NTQW------------------------------VTWSPVGHKLAYV-WNNDIYVKIEPNLPSY  145 (740)
T ss_dssp             CT-----TEEE------------------------------EEECSSTTCEEEE-ETTEEEEESSTTSCCE
T ss_pred             CC-----ccee------------------------------eEECCCCCEEEEE-ECCeEEEEECCCCceE
Confidence            21     1222                              3999999999988 5789999999876543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.97  E-value=5.8e-09  Score=80.13  Aligned_cols=105  Identities=9%  Similarity=-0.009  Sum_probs=74.5

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe----------eCCeEEEEeecCCCCcceeEEEeccC
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS----------IEGRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~----------~dg~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      .|+.|.+||..+++. ..++.. ...+  .++|+|||+++++++          .+++|.+  ||..+++...++.....
T Consensus        29 ~d~~v~v~D~~t~~~-~~~i~~-g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v--~d~~t~~~~~~i~~~~~  102 (361)
T 2oiz_A           29 TESRVHVYDYTNGKF-LGMVPT-AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEV--WDADKLTFEKEISLPPK  102 (361)
T ss_dssp             GGCEEEEEETTTCCE-EEEEEC-CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEE--EETTTCCEEEEEEECTT
T ss_pred             ccCeEEEEECCCCeE-EEEecC-CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEE--EECcCCcEEEEEEcCcc
Confidence            478999999998863 444432 2233  899999999988876          3678999  78877777766653211


Q ss_pred             Cc-eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC--CCcEEEeecCCceeeec
Q 032092           76 GS-ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS--DGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        76 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~--Dg~i~iWd~~~~~~~~~  146 (147)
                      .. ....+..+                              +|+|||++|+.+..  ++.|.+||+++++.+.+
T Consensus       103 ~~~~g~~p~~i------------------------------~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          103 RVQGLNYDGLF------------------------------RQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             BCCBCCCGGGE------------------------------EECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             ccccCCCcceE------------------------------EECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            00 00013444                              99999999888763  68999999999887754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.90  E-value=2e-08  Score=81.92  Aligned_cols=104  Identities=10%  Similarity=0.056  Sum_probs=76.9

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC--CCcceeEEEeccCCceE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS--QQSKNFTFKCHRDGSET   79 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~--~~~~~~~~~~h~~~~~~   79 (147)
                      ++...++.|.++|..+++. +.++..+  ..+..++|||||+++.+++.|+.|.+  ||+.  +++.+.++....     
T Consensus       171 V~~~~~~~V~viD~~t~~v-~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~v--iD~~~~t~~~v~~i~~G~-----  240 (567)
T 1qks_A          171 VTLRDAGQIALIDGSTYEI-KTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNM--IDLWMKEPTTVAEIKIGS-----  240 (567)
T ss_dssp             EEETTTTEEEEEETTTCCE-EEEEECS--SCEEEEEECTTSCEEEEEETTSEEEE--EETTSSSCCEEEEEECCS-----
T ss_pred             EEeCCCCeEEEEECCCCeE-EEEEeCC--CCccceEECCCCCEEEEEcCCCeEEE--EECCCCCCcEeEEEecCC-----
Confidence            4556789999999999853 4555432  34678999999999999999999999  7764  555555443211     


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEe----cCCCeEEEeCC-CCcEEEeecCCceeeec
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFV----QIHHTFATAGS-DGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs----pdg~~latg~~-Dg~i~iWd~~~~~~~~~  146 (147)
                       .+..+                              +|+    |||++++.++. ++.|.++|..+.+.+++
T Consensus       241 -~P~~i------------------------------a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~  281 (567)
T 1qks_A          241 -EARSI------------------------------ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  281 (567)
T ss_dssp             -EEEEE------------------------------EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             -CCcee------------------------------EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence             12233                              999    79988877766 58999999999888764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.90  E-value=2.5e-08  Score=76.05  Aligned_cols=61  Identities=15%  Similarity=0.141  Sum_probs=42.6

Q ss_pred             cCCeEEEEECC-CCccc-eeEecCC-CCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcc
Q 032092            6 ADRNLVVFNLQ-NPQTE-FKRINSP-LKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSK   66 (147)
Q Consensus         6 ~dg~v~iwdi~-~~~~~-~~~~~~~-~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~   66 (147)
                      .++.|++||+. +++.. ...+..+ +...++.++|+|||+++++++. +++|.+|++|..+++.
T Consensus       165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  229 (365)
T 1jof_A          165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence            46799999998 66421 1222211 1345899999999999877764 7899998888766654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.88  E-value=3.4e-08  Score=75.32  Aligned_cols=102  Identities=7%  Similarity=-0.030  Sum_probs=63.8

Q ss_pred             cCCeEEEEECCC-CccceeEec---CCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcce--eEEEeccCCce
Q 032092            6 ADRNLVVFNLQN-PQTEFKRIN---SPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKN--FTFKCHRDGSE   78 (147)
Q Consensus         6 ~dg~v~iwdi~~-~~~~~~~~~---~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~--~~~~~h~~~~~   78 (147)
                      .+|.+++|++.. ++. ...+.   ......+.+++|+|||+++++++. +++|.+|+++. +++..  ..+......  
T Consensus       117 ~~g~v~v~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~g--  192 (365)
T 1jof_A          117 FAGYGNVFSVSETGKL-EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-SGEVELVGSVDAPDPG--  192 (365)
T ss_dssp             SCCEEEEEEECTTCCE-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TSCEEEEEEEECSSTT--
T ss_pred             CCceEEEEccCCCCcC-cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC-CCCEEEeeeEecCCCC--
Confidence            689999999974 432 22221   112235889999999998887654 68999955542 44432  122110000  


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecC--Cce
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKD--SKQ  142 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~--~~~  142 (147)
                       ..+..+                              +|+|||++|+.++. ++.|.+|+.+  +++
T Consensus       193 -~~p~~~------------------------------~~spdg~~l~v~~~~~~~v~v~~~~~~~g~  228 (365)
T 1jof_A          193 -DHPRWV------------------------------AMHPTGNYLYALMEAGNRICEYVIDPATHM  228 (365)
T ss_dssp             -CCEEEE------------------------------EECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             -CCCCEe------------------------------EECCCCCEEEEEECCCCeEEEEEEeCCCCc
Confidence             013333                              99999998877664 7899999764  454

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.86  E-value=5.1e-08  Score=74.82  Aligned_cols=103  Identities=12%  Similarity=0.083  Sum_probs=70.4

Q ss_pred             eecCCeEEEEECCCCccce-eEecCC------CC---cceEEEEEccCCCEEEEEee-----------CCeEEEEeecCC
Q 032092            4 GTADRNLVVFNLQNPQTEF-KRINSP------LK---YQMRCVAAFPDQQGFWVGSI-----------EGRVGVHHLDDS   62 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~~~-~~~~~~------~~---~~i~~la~spdg~~l~~g~~-----------dg~i~i~~~d~~   62 (147)
                      .+.++.|.++|+...+..+ ..+...      ..   ...+-++|+||++.+.+...           .++|.+  ||+.
T Consensus       217 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v--iD~~  294 (361)
T 2oiz_A          217 VSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV--MDTK  294 (361)
T ss_dssp             EBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE--EETT
T ss_pred             EeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE--EECC
Confidence            4567889999997653211 111100      00   01223799999887766543           346777  8888


Q ss_pred             CCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc-
Q 032092           63 QQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK-  141 (147)
Q Consensus        63 ~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~-  141 (147)
                      +++.+.++..+.       +.++                              +|+|||++|++++. ++|.+||.+++ 
T Consensus       295 t~~~v~~i~~~~-------p~~i------------------------------a~spdg~~l~v~n~-~~v~v~D~~t~~  336 (361)
T 2oiz_A          295 TKQRVARIPGRD-------ALSM------------------------------TIDQQRNLMLTLDG-GNVNVYDISQPE  336 (361)
T ss_dssp             TTEEEEEEECTT-------CCEE------------------------------EEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred             CCcEEEEEecCC-------eeEE------------------------------EECCCCCEEEEeCC-CeEEEEECCCCc
Confidence            888877776543       3455                              99999999998886 99999999999 


Q ss_pred             -eeeec
Q 032092          142 -QRLKV  146 (147)
Q Consensus       142 -~~~~~  146 (147)
                       +.+.+
T Consensus       337 l~~~~~  342 (361)
T 2oiz_A          337 PKLLRT  342 (361)
T ss_dssp             CEEEEE
T ss_pred             ceeeEE
Confidence             88764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.80  E-value=3.2e-08  Score=80.58  Aligned_cols=97  Identities=8%  Similarity=0.025  Sum_probs=62.9

Q ss_pred             CeEEEEECCC------CccceeEecCCCCcceEEEEEccCCCEEEEEeeCC--------eEEEEeecCC-CCc--ceeEE
Q 032092            8 RNLVVFNLQN------PQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG--------RVGVHHLDDS-QQS--KNFTF   70 (147)
Q Consensus         8 g~v~iwdi~~------~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg--------~i~i~~~d~~-~~~--~~~~~   70 (147)
                      ..|++||+.+      ++ + ..+...+...+..++|||||++|+.++.++        .|.+  ||+. +++  ....+
T Consensus       161 ~~i~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~--~d~~~~g~~~~~~~l  236 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSA-V-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKT--ARVTEDGRFADTRTL  236 (662)
T ss_dssp             EEEEEEETTSTTTTCGGG-S-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEE--EEECTTSCEEEEEEE
T ss_pred             eEEEEEECCCCccccCCc-e-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEE--EEECCCCcccccEEe
Confidence            5899999988      43 2 333302223577899999999999888664        5776  6665 341  22233


Q ss_pred             Ee-ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC--cEEEeecCCcee
Q 032092           71 KC-HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG--AFNFWDKDSKQR  143 (147)
Q Consensus        71 ~~-h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg--~i~iWd~~~~~~  143 (147)
                      .. |..     .+...                              +|+|||+++++++.|+  .|.+||..+++.
T Consensus       237 ~~~~~~-----~~~~~------------------------------~~spdg~l~~~~~~~~~~~l~~~~~~~~~~  277 (662)
T 3azo_A          237 LGGPEE-----AIAQA------------------------------EWAPDGSLIVATDRTGWWNLHRVDPATGAA  277 (662)
T ss_dssp             EEETTB-----CEEEE------------------------------EECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred             CCCCCc-----eEcce------------------------------EECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence            22 221     12333                              9999999888888888  677777656543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.80  E-value=1.1e-07  Score=69.66  Aligned_cols=103  Identities=6%  Similarity=0.057  Sum_probs=70.1

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCC-CCcceEEEEEccCCCEEEEEeeCC-eEEEEeecCCCCcceeEEEeccCCceE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSP-LKYQMRCVAAFPDQQGFWVGSIEG-RVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~-~~~~i~~la~spdg~~l~~g~~dg-~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      ++.+.++.|++||.... . +..+... ....+..|+++|+|+.+++...++ .|.+  ||. +++.+.++..+....  
T Consensus       179 v~~~~~~~i~~~~~~g~-~-~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~--~~~-~g~~~~~~~~~~~~~--  251 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYEGQ-Y-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI--FTQ-DGQLISALESKVKHA--  251 (286)
T ss_dssp             EEEGGGTEEEEEETTCC-E-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE--ECT-TSCEEEEEEESSCCS--
T ss_pred             EEECCCCEEEEEcCCCC-E-EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEE--ECC-CCCEEEEEcccCCCC--
Confidence            34456889999998543 2 3334321 113578999999999888888776 9999  775 456666665443210  


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                       .+.++                              +++|+|+++++ +.|+.|++|+......
T Consensus       252 -~~~~i------------------------------~~~~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          252 -QCFDV------------------------------ALMDDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             -CEEEE------------------------------EEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             -cceeE------------------------------EECCCCcEEEE-CCCCeEEEEEcccccc
Confidence             12233                              99999998888 4699999999876543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.77  E-value=2e-07  Score=70.21  Aligned_cols=117  Identities=12%  Similarity=0.066  Sum_probs=74.0

Q ss_pred             eEeecCCeEEEEECCCCccceeEecC--------CCCcceEEEEEcc-CCCEEEEEe-eCCeEEEEeecCCCCcceeEEE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINS--------PLKYQMRCVAAFP-DQQGFWVGS-IEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~--------~~~~~i~~la~sp-dg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      ++...++.|++||.......+..+..        ..-.....|+++| +|+.+++.+ .+++|++  ||. +++.+..+.
T Consensus       106 v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~--~~~-~g~~~~~~~  182 (329)
T 3fvz_A          106 VTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ--FSP-SGKFVTQWG  182 (329)
T ss_dssp             EEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE--ECT-TSCEEEEEC
T ss_pred             EEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE--EcC-CCCEEEEec
Confidence            45566789999998654222333321        1112478999999 788888886 6999999  773 466655553


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC-CCeEEEeCCCCcEEEeecCCceeeec
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI-HHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd-g~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .......   ...                      ..+.....++++|+ |+++++...++.|++||.++++.+.+
T Consensus       183 ~~g~~~~---~~~----------------------~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~  233 (329)
T 3fvz_A          183 EESSGSS---PRP----------------------GQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE  233 (329)
T ss_dssp             EECCSSS---CCT----------------------TEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             cCCCCCC---CCC----------------------cccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence            2211000   000                      00111123499999 78889988999999999987877654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.76  E-value=2.4e-08  Score=75.79  Aligned_cols=96  Identities=9%  Similarity=-0.006  Sum_probs=64.7

Q ss_pred             EEECCCCccceeEecCCCCcceEE-----EEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092           12 VFNLQNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF   85 (147)
Q Consensus        12 iwdi~~~~~~~~~~~~~~~~~i~~-----la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~   85 (147)
                      ..|..++.. ...+.. +......     .+|||||++|+.++. +|...||.+|+.+++......++..     .+...
T Consensus        14 ~~~~~~g~~-~~~lt~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~-----~~~~~   86 (388)
T 3pe7_A           14 YQDASTGAQ-VTRLTP-PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD-----NTFGG   86 (388)
T ss_dssp             EECTTTCCE-EEECSC-TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB-----CSSSC
T ss_pred             EecCCCCcc-eEEecC-CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC-----Cccce
Confidence            456666653 333332 2222333     789999999998887 7865666688876655433322221     12244


Q ss_pred             eeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           86 TSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                                                    +|+|||+.|+.++.++.|++||+.+++..
T Consensus        87 ------------------------------~~spdg~~l~~~~~~~~l~~~d~~~g~~~  115 (388)
T 3pe7_A           87 ------------------------------FLSPDDDALFYVKDGRNLMRVDLATLEEN  115 (388)
T ss_dssp             ------------------------------EECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             ------------------------------EEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence                                          99999999999999999999999987643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.76  E-value=7.9e-08  Score=71.98  Aligned_cols=93  Identities=15%  Similarity=0.148  Sum_probs=64.6

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC---CeEEEEeecCCCCcceeEEEeccCCceEEeec
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE---GRVGVHHLDDSQQSKNFTFKCHRDGSETCSVI   83 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d---g~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~   83 (147)
                      ++.|.+||+.+++.  ..+     ..+..++|||||+.|+..+.+   +...||.+|+.+++...... +.     . +.
T Consensus        42 ~~~l~~~d~~~~~~--~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~-----~-~~  107 (347)
T 2gop_A           42 ENTIVIENLKNNAR--RFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AK-----N-IR  107 (347)
T ss_dssp             EEEEEEEETTTCCE--EEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ES-----E-EE
T ss_pred             cceEEEEeCCCCce--EEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CC-----C-cc
Confidence            67899999998752  233     247889999999999987765   56566668876554332221 11     0 23


Q ss_pred             cceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCC---------------------------CcEEEe
Q 032092           84 SFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSD---------------------------GAFNFW  136 (147)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~D---------------------------g~i~iW  136 (147)
                      ..                              +|+|||+.|+.++.+                           ..|++|
T Consensus       108 ~~------------------------------~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  157 (347)
T 2gop_A          108 SL------------------------------EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIF  157 (347)
T ss_dssp             EE------------------------------EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEE
T ss_pred             ce------------------------------eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEE
Confidence            33                              999999988887642                           579999


Q ss_pred             ecCCcee
Q 032092          137 DKDSKQR  143 (147)
Q Consensus       137 d~~~~~~  143 (147)
                      |+.+++.
T Consensus       158 d~~~~~~  164 (347)
T 2gop_A          158 DTESEEV  164 (347)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCeE
Confidence            9988765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.70  E-value=1e-06  Score=66.44  Aligned_cols=137  Identities=7%  Similarity=0.015  Sum_probs=84.7

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc-------C
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR-------D   75 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~-------~   75 (147)
                      +...++.|.+||..+++. ..++..  ......|+++|+++.+++...++.|.+  +|+.+++...++....       .
T Consensus        59 ~~~~~~~v~viD~~t~~~-~~~i~~--~~~p~~i~~~~~g~lyv~~~~~~~v~~--iD~~t~~~~~~i~~g~~~~~~~~p  133 (328)
T 3dsm_A           59 VVNNSHVIFAIDINTFKE-VGRITG--FTSPRYIHFLSDEKAYVTQIWDYRIFI--INPKTYEITGYIECPDMDMESGST  133 (328)
T ss_dssp             EEGGGTEEEEEETTTCCE-EEEEEC--CSSEEEEEEEETTEEEEEEBSCSEEEE--EETTTTEEEEEEECTTCCTTTCBC
T ss_pred             EEcCCCEEEEEECcccEE-EEEcCC--CCCCcEEEEeCCCeEEEEECCCCeEEE--EECCCCeEEEEEEcCCccccCCCc
Confidence            445678999999999864 445532  235789999999965555547899999  8888777666665322       1


Q ss_pred             CceEEeeccceeeeec--CCCcceeeeee-eeeeee---eeceEEEEEecCCCeEEEeCCC----------CcEEEeecC
Q 032092           76 GSETCSVISFTSILAG--DAPKYSSFYKV-KRLHLF---VKSHVIVLFVQIHHTFATAGSD----------GAFNFWDKD  139 (147)
Q Consensus        76 ~~~~~~v~~~~~~~~~--~~~~~~~~~~~-~~~~~~---~~~~~~~~fspdg~~latg~~D----------g~i~iWd~~  139 (147)
                      .....  ..-.+..+.  .+..+.++..- .+....   ......++++|+|++++++..+          +.|.++|.+
T Consensus       134 ~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~  211 (328)
T 3dsm_A          134 EQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE  211 (328)
T ss_dssp             CCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred             ceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence            11222  222233332  23344433311 111111   1223467999999988887765          789999999


Q ss_pred             Cceeeec
Q 032092          140 SKQRLKV  146 (147)
Q Consensus       140 ~~~~~~~  146 (147)
                      +++.+.+
T Consensus       212 t~~v~~~  218 (328)
T 3dsm_A          212 TFTVEKQ  218 (328)
T ss_dssp             TTEEEEE
T ss_pred             CCeEEEE
Confidence            8877643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.68  E-value=2.2e-06  Score=63.10  Aligned_cols=134  Identities=5%  Similarity=-0.129  Sum_probs=77.6

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-----
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-----   76 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-----   76 (147)
                      +++..++.|+.||..++ .  ..+..+ ...+.+|+++|+|+.+++...++.|.+  ||..+++...........     
T Consensus        44 ~~~~~~~~i~~~~~~~~-~--~~~~~~-~~~~~~l~~~~dg~l~v~~~~~~~i~~--~d~~~g~~~~~~~~~~~~~~~~~  117 (296)
T 3e5z_A           44 FSDVRQNRTWAWSDDGQ-L--SPEMHP-SHHQNGHCLNKQGHLIACSHGLRRLER--QREPGGEWESIADSFEGKKLNSP  117 (296)
T ss_dssp             EEEGGGTEEEEEETTSC-E--EEEESS-CSSEEEEEECTTCCEEEEETTTTEEEE--ECSTTCCEEEEECEETTEECCCC
T ss_pred             EEeCCCCEEEEEECCCC-e--EEEECC-CCCcceeeECCCCcEEEEecCCCeEEE--EcCCCCcEEEEeeccCCCCCCCC
Confidence            56778899999999876 2  333322 245889999999998887777789988  787666543222111110     


Q ss_pred             -ceEEeeccceeeee----cC-----------C---Ccceeeeeeeeeee---eeeceEEEEEecCCCeEEEeCCCCcEE
Q 032092           77 -SETCSVISFTSILA----GD-----------A---PKYSSFYKVKRLHL---FVKSHVIVLFVQIHHTFATAGSDGAFN  134 (147)
Q Consensus        77 -~~~~~v~~~~~~~~----~~-----------~---~~~~~~~~~~~~~~---~~~~~~~~~fspdg~~latg~~Dg~i~  134 (147)
                       ......... +..+    |.           +   ..+..+..-.+...   .+.....++|+|||+.|++.+.++.|+
T Consensus       118 ~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~  196 (296)
T 3e5z_A          118 NDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATH  196 (296)
T ss_dssp             CCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEE
Confidence             011111111 1121    11           0   01111111011111   112235789999999888888899999


Q ss_pred             EeecC-Cce
Q 032092          135 FWDKD-SKQ  142 (147)
Q Consensus       135 iWd~~-~~~  142 (147)
                      +||+. +++
T Consensus       197 ~~~~~~~g~  205 (296)
T 3e5z_A          197 RYCLNARGE  205 (296)
T ss_dssp             EEEECSSSC
T ss_pred             EEEECCCCc
Confidence            99986 444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.67  E-value=1.5e-07  Score=73.55  Aligned_cols=94  Identities=13%  Similarity=0.133  Sum_probs=65.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |+++ .++.|++||+++..+. .... .++.++.++.+.+.  .+++++.||.+.+  ||..++....    +.     -
T Consensus       100 L~v~-~~~~l~v~dv~sl~~~-~~~~-~~~~~v~~i~~~~p--~~av~~~dG~L~v--~dl~~~~~~~----~~-----~  163 (388)
T 1xip_A          100 VLVS-TRNALYSLDLEELSEF-RTVT-SFEKPVFQLKNVNN--TLVILNSVNDLSA--LDLRTKSTKQ----LA-----Q  163 (388)
T ss_dssp             EEEE-ESSEEEEEESSSTTCE-EEEE-ECSSCEEEEEECSS--EEEEEETTSEEEE--EETTTCCEEE----EE-----E
T ss_pred             EEEE-cCCcEEEEEchhhhcc-Cccc-eeecceeeEEecCC--CEEEEECCCCEEE--EEccCCcccc----cc-----C
Confidence            4566 8899999999986532 2221 23345777766543  4999999999999  6665444321    11     1


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      .+.++                              +|||+|  ++.|..||++++|+...++
T Consensus       164 ~Vs~v------------------------------~WSpkG--~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          164 NVTSF------------------------------DVTNSQ--LAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             SEEEE------------------------------EECSSE--EEEEETTSCEEEEEEETTE
T ss_pred             CceEE------------------------------EEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence            24555                              999999  6778899999999887655

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.65  E-value=3.1e-09  Score=82.03  Aligned_cols=140  Identities=9%  Similarity=0.042  Sum_probs=66.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc-eE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-ET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-~~   79 (147)
                      |++|+.||.|+.||.++++.. -+...   .++.+..+.++++.+++++.||.++.  ||..+++.+..+..+.... ..
T Consensus        12 v~~gs~dg~v~a~d~~tG~~~-W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a--~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A           12 LFVSTLDGSLHAVSKRTGSIK-WTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYT--LGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             EEEEETTSEEEEEETTTCCEE-EEEEC---CCSCCCC-----CCEEECTTTCCEEE--C-----CCSEECSCCHHHHHTT
T ss_pred             EEEEcCCCEEEEEECCCCCEE-EEecC---CCceecceEcCCCEEEEeCCCCEEEE--EECCCCceeeeeeccCcccccc
Confidence            468899999999999999753 22322   23455556677888888899999999  8887777765553321100 00


Q ss_pred             Eeec-cceeeeecCCC-cceeeeee-eeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           80 CSVI-SFTSILAGDAP-KYSSFYKV-KRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~-~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .++. .-..+..|+.+ .+..+... -+..+.+..+....++|++..++.++.|+.|+.||.++++.+.+
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC----------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence            0111 11122223222 22222211 12233333333456788888999999999999999999987654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.65  E-value=3.9e-07  Score=66.65  Aligned_cols=104  Identities=9%  Similarity=0.004  Sum_probs=68.0

Q ss_pred             EeecCCeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      +...++.|++||... + ....+.. .....++.|+++|+|+.+++...++.|.+  ||.. ++.+.++..+...   ..
T Consensus       137 ~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~--~~~~-g~~~~~~~~~g~~---~~  208 (286)
T 1q7f_A          137 VECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV--FNYE-GQYLRQIGGEGIT---NY  208 (286)
T ss_dssp             EETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEE--EETT-CCEEEEESCTTTS---CS
T ss_pred             EECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEE--EcCC-CCEEEEEccCCcc---CC
Confidence            445678999999653 3 2333322 12234789999999998888888999999  6653 4444444322100   01


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC-cEEEeecCCceeee
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG-AFNFWDKDSKQRLK  145 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg-~i~iWd~~~~~~~~  145 (147)
                      +..+                              +++|+|+++++...++ .|.+||. +++.+.
T Consensus       209 p~~i------------------------------~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~  242 (286)
T 1q7f_A          209 PIGV------------------------------GINSNGEILIADNHNNFNLTIFTQ-DGQLIS  242 (286)
T ss_dssp             EEEE------------------------------EECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred             CcEE------------------------------EECCCCCEEEEeCCCCEEEEEECC-CCCEEE
Confidence            2333                              8999999888888776 9999995 444443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.63  E-value=4.9e-07  Score=70.62  Aligned_cols=104  Identities=11%  Similarity=-0.090  Sum_probs=73.0

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe----------eCCeEEEEeecCCCCcceeEEEecc-C
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS----------IEGRVGVHHLDDSQQSKNFTFKCHR-D   75 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~----------~dg~i~i~~~d~~~~~~~~~~~~h~-~   75 (147)
                      ++.|.++|..+++. +.++... ..+ . +++||||+++.+++          .++.|.+  ||..+++...++.... .
T Consensus        58 ~~~V~ViD~~t~~v-~~~I~vG-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv--iD~~t~~v~~~I~v~~g~  131 (386)
T 3sjl_D           58 VTQQFVIDGEAGRV-IGMIDGG-FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV--FDPVTLLPTADIELPDAP  131 (386)
T ss_dssp             SEEEEEEETTTTEE-EEEEEEC-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE--ECTTTCCEEEEEEETTCC
T ss_pred             CCEEEEEECCCCeE-EEEEECC-CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEE--EECCCCeEEEEEECCCcc
Confidence            67999999999863 4555432 234 4 99999999887765          3678998  8988887776664211 0


Q ss_pred             Cc-eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC--CCcEEEeecCCceeeec
Q 032092           76 GS-ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS--DGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        76 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~--Dg~i~iWd~~~~~~~~~  146 (147)
                      .. ..-.+..+                              +|+|||+++..+..  ++.|.++|+.+++.+.+
T Consensus       132 r~~~g~~P~~~------------------------------a~spDGk~lyVan~~~~~~VsVID~~t~~vv~t  175 (386)
T 3sjl_D          132 RFLVGTYPWMT------------------------------SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM  175 (386)
T ss_dssp             CCCBSCCGGGE------------------------------EECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             ccccCCCCceE------------------------------EEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            00 00013344                              99999998777653  68999999999998765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.60  E-value=5e-07  Score=68.46  Aligned_cols=66  Identities=14%  Similarity=0.153  Sum_probs=44.9

Q ss_pred             eEeec-CC--eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092            2 VVGTA-DR--NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         2 ~~gs~-dg--~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      +.++. +|  .|.+||+.+++.  ..+...+...+..++|+|||+.|+.++.++.+++  ||+.+++....+.
T Consensus        51 ~~~~~~~g~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~--~d~~~g~~~~~~~  119 (388)
T 3pe7_A           51 LFGGAFDGPWNYYLLDLNTQVA--TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMR--VDLATLEENVVYQ  119 (388)
T ss_dssp             EEEECTTSSCEEEEEETTTCEE--EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEE--EETTTCCEEEEEE
T ss_pred             EEEEcCCCCceEEEEeCCCCce--EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEE--EECCCCcceeeee
Confidence            44555 56  488889998753  2333223333446789999999999999999988  7777665544443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.59  E-value=1.1e-07  Score=71.57  Aligned_cols=105  Identities=10%  Similarity=0.060  Sum_probs=69.7

Q ss_pred             eEeecCCeEEEEECCCCccceeEecC-CCCcceEEEEEcc------CCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFP------DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR   74 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~sp------dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~   74 (147)
                      ++...++.|++||..+++. ...+.. .....+.+++++|      +|+.+++...+++|.+  ||..+++.+.++....
T Consensus       212 v~d~~~~~I~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~--~~~~~g~~~~~~~~~~  288 (329)
T 3fvz_A          212 VADRENGRIQCFKTDTKEF-VREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV--MNFSSGEIIDVFKPVR  288 (329)
T ss_dssp             EEETTTTEEEEEETTTCCE-EEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEE--EETTTCCEEEEECCSS
T ss_pred             EEECCCCEEEEEECCCCcE-EEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEE--EEcCCCeEEEEEcCCC
Confidence            4456788999999987753 344432 2234578999999      4444444455568888  7777777766653110


Q ss_pred             CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                      .  ....+..+                              +++|+|+++++...++.|++|+.+..
T Consensus       289 ~--~~~~p~~i------------------------------a~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          289 K--HFDMPHDI------------------------------VASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             S--CCSSEEEE------------------------------EECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             C--ccCCeeEE------------------------------EECCCCCEEEEECCCCEEEEEeCCcc
Confidence            0  00013344                              99999999999999999999998643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.58  E-value=2.2e-07  Score=75.67  Aligned_cols=95  Identities=8%  Similarity=0.001  Sum_probs=61.6

Q ss_pred             CCeEEEEECC--C-CccceeEecCC----CCcceEEEEEccCCCEEEEEeeC----------CeEEEEeecCCC------
Q 032092            7 DRNLVVFNLQ--N-PQTEFKRINSP----LKYQMRCVAAFPDQQGFWVGSIE----------GRVGVHHLDDSQ------   63 (147)
Q Consensus         7 dg~v~iwdi~--~-~~~~~~~~~~~----~~~~i~~la~spdg~~l~~g~~d----------g~i~i~~~d~~~------   63 (147)
                      +..|.++|+.  . ++ + ..+...    +...+.+++|||||+.|++++.+          .+|.+  ||+.+      
T Consensus       101 ~~~l~~~~~~~~g~~~-~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~  176 (662)
T 3azo_A          101 DQRLYAFEPDAPGGAV-P-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA--VPLDGSAAADR  176 (662)
T ss_dssp             TCCEEEECTTSTTCCC-C-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE--EETTSTTTTCG
T ss_pred             CCeEEEEcCCCCCCCC-C-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE--EECCCCccccC
Confidence            4566777765  2 32 2 233221    33467899999999999998876          46766  77654      


Q ss_pred             CcceeEEE-eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC--------cEE
Q 032092           64 QSKNFTFK-CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG--------AFN  134 (147)
Q Consensus        64 ~~~~~~~~-~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg--------~i~  134 (147)
                      ++. ..+. .+..     .+...                              +|||||++||.++.|+        .|+
T Consensus       177 ~~~-~~l~~~~~~-----~~~~~------------------------------~~SpDG~~la~~~~~~~~~~~~~~~i~  220 (662)
T 3azo_A          177 SAV-RELSDDAHR-----FVTGP------------------------------RLSPDGRQAVWLAWDHPRMPWEGTELK  220 (662)
T ss_dssp             GGS-EESSCSCSS-----EECCC------------------------------EECTTSSEEEEEEECTTCCTTTCEEEE
T ss_pred             Cce-eEEEecCCC-----cccCc------------------------------eECCCCCEEEEEECCCCCCCCCCcEEE
Confidence            332 2332 2221     23444                              9999999998877553        799


Q ss_pred             EeecC-Cc
Q 032092          135 FWDKD-SK  141 (147)
Q Consensus       135 iWd~~-~~  141 (147)
                      +||++ ++
T Consensus       221 ~~d~~~~g  228 (662)
T 3azo_A          221 TARVTEDG  228 (662)
T ss_dssp             EEEECTTS
T ss_pred             EEEECCCC
Confidence            99998 55

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.55  E-value=8.2e-08  Score=79.81  Aligned_cols=78  Identities=8%  Similarity=0.097  Sum_probs=57.5

Q ss_pred             eEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeece
Q 032092           33 MRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH  112 (147)
Q Consensus        33 i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (147)
                      ..+++|+|||++++++  ||+|++  ||..+++....+.+|.........++.                           
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------   67 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILV--FNAEYGNSSVFLENSTFDEFGHSINDY---------------------------   67 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEE--EETTTCCEEEEECTTTTTTCCSCCCEE---------------------------
T ss_pred             ccccEECCCCcEEEEc--CCcEEE--EECCCCceEEEEechhhhhhcccccce---------------------------
Confidence            5689999999888886  999999  777777766666666532110001123                           


Q ss_pred             EEEEEecCCCeEEEeCCC---------CcEEEeecCCceee
Q 032092          113 VIVLFVQIHHTFATAGSD---------GAFNFWDKDSKQRL  144 (147)
Q Consensus       113 ~~~~fspdg~~latg~~D---------g~i~iWd~~~~~~~  144 (147)
                         +|||||++|+.++.+         +.+.+||++++++.
T Consensus        68 ---~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~  105 (740)
T 4a5s_A           68 ---SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI  105 (740)
T ss_dssp             ---EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred             ---EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
Confidence               899999999998876         56679999988754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.50  E-value=1.8e-07  Score=77.21  Aligned_cols=100  Identities=10%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             eecCCeEEEEECCCCccc-eeEecCCCCcceEEEEEccCCCEEEEEeeCCe-------------EEEEeecCCCCcce--
Q 032092            4 GTADRNLVVFNLQNPQTE-FKRINSPLKYQMRCVAAFPDQQGFWVGSIEGR-------------VGVHHLDDSQQSKN--   67 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~~-~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~-------------i~i~~~d~~~~~~~--   67 (147)
                      |+++..|++||+.+++.. ...+. .  ....+++|+|||+.|+.++.|..             |++  |++.++...  
T Consensus       143 G~~~~~i~v~dl~tg~~~~~~~~~-~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~--~~l~t~~~~~~  217 (695)
T 2bkl_A          143 AADEAVLHVIDVDSGEWSKVDVIE-G--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRY--HTLGTEPSKDT  217 (695)
T ss_dssp             TCSCCEEEEEETTTCCBCSSCCBS-C--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEE--EETTSCGGGCE
T ss_pred             CCceEEEEEEECCCCCCcCCcccC-c--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEE--EECCCCchhce
Confidence            445679999999998632 11111 1  11268999999999999988776             777  666544421  


Q ss_pred             eEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC----cEEEeecCCc
Q 032092           68 FTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG----AFNFWDKDSK  141 (147)
Q Consensus        68 ~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg----~i~iWd~~~~  141 (147)
                      ..+.......   .+.+                              ++|||||++|+.++.++    .|++||..++
T Consensus       218 lv~~~~~~~~---~~~~------------------------------~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~  262 (695)
T 2bkl_A          218 VVHERTGDPT---TFLQ------------------------------SDLSRDGKYLFVYILRGWSENDVYWKRPGEK  262 (695)
T ss_dssp             EEECCCCCTT---CEEE------------------------------EEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred             EEEecCCCCE---EEEE------------------------------EEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence            1221111000   0112                              39999999888877666    7788876544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.47  E-value=3.7e-07  Score=75.49  Aligned_cols=94  Identities=5%  Similarity=0.034  Sum_probs=60.2

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCe----------------EEEEeecCCCCcce--eEE
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGR----------------VGVHHLDDSQQSKN--FTF   70 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~----------------i~i~~~d~~~~~~~--~~~   70 (147)
                      .|++||+.+++. ......  ...+.+++|+|||+.|+.++.++.                |.+  |++.++...  ..+
T Consensus       152 ~i~v~d~~tg~~-~~~~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~l~t~~~~~~~v~  226 (710)
T 2xdw_A          152 TIKFMKVDGAKE-LPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY--HVLGTDQSEDILCA  226 (710)
T ss_dssp             EEEEEETTTTEE-EEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE--EETTSCGGGCEEEE
T ss_pred             EEEEEECCCCCC-Cccccc--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEE--EECCCCcccceEEe
Confidence            899999999863 221111  112568999999999999888765                766  666544422  112


Q ss_pred             EeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-----CCcEEEeecCC
Q 032092           71 KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-----DGAFNFWDKDS  140 (147)
Q Consensus        71 ~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-----Dg~i~iWd~~~  140 (147)
                      .......   ...                              .++|||||++|+.++.     +..|++||+.+
T Consensus       227 ~~~~~~~---~~~------------------------------~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          227 EFPDEPK---WMG------------------------------GAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             CCTTCTT---CEE------------------------------EEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             ccCCCCe---EEE------------------------------EEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence            2110000   011                              2399999998887654     56899999876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.47  E-value=1.7e-07  Score=72.19  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=59.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |++|+.|+.|+.||.++++.. -.+..+     ....++|+++.+++++.|+.+..  ||.++++....+..+.      
T Consensus        95 v~~g~~dg~v~a~D~~tG~~~-w~~~~~-----~~~~~~p~~~~v~~~~~dg~v~a--~d~~tG~~~W~~~~~~------  160 (369)
T 2hz6_A           95 LYMGKKQDIWYVIDLLTGEKQ-QTLSSA-----FADSLSPSTSLLYLGRTEYTITM--YDTKTRELRWNATYFD------  160 (369)
T ss_dssp             CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEEC--CCSSSSSCCCEEEEEE------
T ss_pred             EEEEeCCCEEEEEECCCCcEE-EEecCC-----CcccccccCCEEEEEecCCEEEE--EECCCCCEEEeEeccc------
Confidence            456788999999999998642 222211     12456788889999999999998  8998888877665321      


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC---CeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH---HTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg---~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                       ..+.                              ++.++.   ..++.++.||.++.||.++++.+.+
T Consensus       161 -~~~~------------------------------~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~  198 (369)
T 2hz6_A          161 -YAAS------------------------------LPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI  198 (369)
T ss_dssp             -ECCB------------------------------CCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred             -ccCc------------------------------cccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence             1122                              334432   4566678899999999999988765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.47  E-value=1.3e-05  Score=59.28  Aligned_cols=138  Identities=9%  Similarity=0.029  Sum_probs=86.5

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccC--C-----
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRD--G-----   76 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~--~-----   76 (147)
                      +.++.|+.||. +++. +-++..+....+.++++.|||+.+++.+. ++++..  +|. +++.+.++.....  .     
T Consensus        53 s~~~~V~~~d~-~G~~-~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~--vd~-~Gk~l~~~~~~~~~~~~~~~~  127 (276)
T 3no2_A           53 SYSKGAKMITR-DGRE-LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILE--VNM-KGEVLSKTEFETGIERPHAQF  127 (276)
T ss_dssp             ECBSEEEEECT-TSCE-EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEE--ECT-TSCEEEEEEECCSCSSGGGSC
T ss_pred             eCCCCEEEECC-CCCE-EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEE--EeC-CCCEEEEEeccCCCCcccccc
Confidence            45778999999 6754 34444332346889999999999999887 777766  776 6777766652111  0     


Q ss_pred             -ceEEeeccceeeeecCCCcceeeeeeeeeeeeee---ceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           77 -SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVK---SHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        77 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                       ......+.-.+++...+..+..+..--+..+.+.   ...++.+.|+|+++++++.++.|..+|.++++.+.+|
T Consensus       128 ~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          128 RQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             SCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             cCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence             0111122222233333333333332223333332   2345688899999999988889999999999987764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.46  E-value=2.2e-06  Score=70.89  Aligned_cols=74  Identities=8%  Similarity=-0.029  Sum_probs=54.2

Q ss_pred             cceEEEEEccCCCEEEEEeeCC-----eEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeee
Q 032092           31 YQMRCVAAFPDQQGFWVGSIEG-----RVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRL  105 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~~dg-----~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  105 (147)
                      ..+..++|||||++||.+..++     +|++  ||+.+++.......+.      .+.++                    
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v--~d~~tg~~~~~~~~~~------~~~~~--------------------  176 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKF--MKVDGAKELPDVLERV------KFSCM--------------------  176 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEE--EETTTTEEEEEEEEEE------CSCCE--------------------
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEE--EECCCCCCCcccccCc------ccceE--------------------
Confidence            3578999999999999876654     7888  7777665543211111      13344                    


Q ss_pred             eeeeeceEEEEEecCCCeEEEeCCCCc----------------EEEeecCCce
Q 032092          106 HLFVKSHVIVLFVQIHHTFATAGSDGA----------------FNFWDKDSKQ  142 (147)
Q Consensus       106 ~~~~~~~~~~~fspdg~~latg~~Dg~----------------i~iWd~~~~~  142 (147)
                                +|+|||+.|+.++.|+.                |++|++.+++
T Consensus       177 ----------~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          177 ----------AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ  219 (710)
T ss_dssp             ----------EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred             ----------EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence                      99999999998888766                9999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.46  E-value=1.8e-06  Score=65.10  Aligned_cols=98  Identities=5%  Similarity=-0.054  Sum_probs=68.4

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC----------CeEEEEeecCCCCcceeEEEeccC
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE----------GRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d----------g~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      .++.|.++|+++++. ..++...  .....++++|+|+.++++..+          +.|.+  +|+.+++...++.....
T Consensus       150 ~~~~v~viD~~t~~~-~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~--id~~t~~v~~~~~~~~g  224 (328)
T 3dsm_A          150 YQNRILKIDTETDKV-VDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYR--IDAETFTVEKQFKFKLG  224 (328)
T ss_dssp             TCCEEEEEETTTTEE-EEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEE--EETTTTEEEEEEECCTT
T ss_pred             CCCEEEEEECCCCeE-EEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccCCceEEE--EECCCCeEEEEEecCCC
Confidence            488999999999853 3444322  235789999999987777655          78888  88877765555432111


Q ss_pred             CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      .    .++.+                              +|+||+++|..+..  .|.+||.++++..
T Consensus       225 ~----~p~~l------------------------------a~~~d~~~lyv~~~--~v~~~d~~t~~~~  257 (328)
T 3dsm_A          225 D----WPSEV------------------------------QLNGTRDTLYWINN--DIWRMPVEADRVP  257 (328)
T ss_dssp             C----CCEEE------------------------------EECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred             C----CceeE------------------------------EEecCCCEEEEEcc--EEEEEECCCCcee
Confidence            0    13344                              99999988877655  8999999887653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.45  E-value=3e-06  Score=66.95  Aligned_cols=103  Identities=11%  Similarity=-0.102  Sum_probs=73.6

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe----------eCCeEEEEeecCCCCcceeEEEec--cC
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS----------IEGRVGVHHLDDSQQSKNFTFKCH--RD   75 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~----------~dg~i~i~~~d~~~~~~~~~~~~h--~~   75 (147)
                      +.|.++|..+++. +.++..+ ..+  .++++|||+++.++.          .++.|.+  +|+.+++...++.--  +.
T Consensus        99 ~~VsVID~~t~~v-v~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsv--iD~~t~~vv~~I~v~g~~r  172 (426)
T 3c75_H           99 TQQFVIDGSTGRI-LGMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEV--FDPVTFLPIADIELPDAPR  172 (426)
T ss_dssp             EEEEEEETTTTEE-EEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE--ECTTTCCEEEEEEETTCCC
T ss_pred             CeEEEEECCCCEE-EEEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEE--EECCCCcEEEEEECCCccc
Confidence            7999999999864 4555433 234  899999999888776          3678988  899888777666421  00


Q ss_pred             CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC--CCcEEEeecCCceeeec
Q 032092           76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS--DGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~--Dg~i~iWd~~~~~~~~~  146 (147)
                      ......+..+                              +|+|||++|+.+..  ++.|.+.|+.+++.+.+
T Consensus       173 ~~~g~~P~~~------------------------------~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~  215 (426)
T 3c75_H          173 FLVGTYQWMN------------------------------ALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRM  215 (426)
T ss_dssp             CCBSCCGGGS------------------------------EECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             cccCCCcceE------------------------------EEcCCCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence            0000013445                              99999998888764  57899999999988764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.44  E-value=5e-06  Score=61.86  Aligned_cols=61  Identities=13%  Similarity=0.086  Sum_probs=42.7

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC----CeEEEEeecCCCCcc
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE----GRVGVHHLDDSQQSK   66 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d----g~i~i~~~d~~~~~~   66 (147)
                      +++..++.|.+||..+++.  ..+.......+.+++++|+|+.+++...+    +.|.+  ||..+++.
T Consensus        60 ~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~--~d~~~~~~  124 (333)
T 2dg1_A           60 LLDVFEGNIFKINPETKEI--KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA--ATENGDNL  124 (333)
T ss_dssp             EEETTTCEEEEECTTTCCE--EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE--ECTTSCSC
T ss_pred             EEECCCCEEEEEeCCCCcE--EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE--EeCCCCEE
Confidence            3567789999999988753  22221223468999999999988877666    67887  77765443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.42  E-value=3.8e-06  Score=69.83  Aligned_cols=32  Identities=13%  Similarity=0.124  Sum_probs=28.4

Q ss_pred             EEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          116 LFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       116 ~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+.+.+.+++.|+.||.++.||.++++.+.+|
T Consensus       481 ~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          481 TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ  512 (689)
T ss_dssp             EEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceECCCEEEEECCCCcEEEEECCCCccceee
Confidence            67778888999999999999999999998764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.42  E-value=3.2e-06  Score=63.81  Aligned_cols=94  Identities=10%  Similarity=0.012  Sum_probs=60.2

Q ss_pred             CeEEEEECCCCccceeEecCCC-CcceEEEEEccCCCEEEEEeeC-----CeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            8 RNLVVFNLQNPQTEFKRINSPL-KYQMRCVAAFPDQQGFWVGSIE-----GRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~-~~~i~~la~spdg~~l~~g~~d-----g~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      ..|.+||+..++.  ..+.... ...+..++|+|||+.|+..+.+     +.|.+  ||+.+++... +.....      
T Consensus       216 ~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~--~d~~~g~~~~-l~~~~~------  284 (396)
T 3c5m_A          216 ARMWLVNEDGSNV--RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK--ANPETLENEE-VMVMPP------  284 (396)
T ss_dssp             CCCEEEETTSCCC--EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE--ECTTTCCEEE-EEECCS------
T ss_pred             ceEEEEECCCCce--eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEE--EECCCCCeEE-eeeCCC------
Confidence            4688899876542  2222211 2357889999999988877654     44777  7776554322 211110      


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEec-CCCeEEEeC----------------CCCcEEEeecCCcee
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQ-IHHTFATAG----------------SDGAFNFWDKDSKQR  143 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsp-dg~~latg~----------------~Dg~i~iWd~~~~~~  143 (147)
                      .. .                              +|+| ||++++.++                .++.|++||+++++.
T Consensus       285 ~~-~------------------------------~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          285 CS-H------------------------------LMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             EE-E------------------------------EEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             CC-C------------------------------CccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            01 3                              8999 999888754                347899999987653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.41  E-value=5.4e-06  Score=68.78  Aligned_cols=32  Identities=9%  Similarity=0.118  Sum_probs=28.5

Q ss_pred             EEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          116 LFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       116 ~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+.+++.+++.|+.||.+++||+++++.+++|
T Consensus       483 ~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          483 TLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             EEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence            67788888888999999999999999998865

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.39  E-value=6.1e-06  Score=63.77  Aligned_cols=101  Identities=9%  Similarity=-0.110  Sum_probs=67.6

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe----------eCCeEEEEeecCCCCcceeEEEec-cCCc
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS----------IEGRVGVHHLDDSQQSKNFTFKCH-RDGS   77 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~----------~dg~i~i~~~d~~~~~~~~~~~~h-~~~~   77 (147)
                      +|.+||..+++. ..++... ..+  .+++||||+.+.++.          .++.|.+  +|+.+.+...++..- ....
T Consensus        48 ~v~v~D~~t~~~-~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v--iD~~t~~~~~~i~~~~~~~~  121 (373)
T 2mad_H           48 QQWVLDAGSGSI-LGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV--FDPVTFLPIADIELPDAPRF  121 (373)
T ss_pred             EEEEEECCCCeE-EEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEE--EECCCCcEEEEEECCCcccc
Confidence            889999999863 4444322 223  999999999988876          3678888  788766665554321 0000


Q ss_pred             e-EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC--CCcEEEeecCCceeeec
Q 032092           78 E-TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS--DGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        78 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~--Dg~i~iWd~~~~~~~~~  146 (147)
                      . .-.+..+                              +|+|||++|+.+..  ++.|.++| ++++.+.+
T Consensus       122 ~~g~~p~~~------------------------------~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H          122 DVGPYSWMN------------------------------ANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             ccCCCccce------------------------------EECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence            0 0012233                              99999998888764  47899999 98887654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.38  E-value=4e-07  Score=68.85  Aligned_cols=101  Identities=9%  Similarity=0.012  Sum_probs=61.0

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCe----EEEEeecCCCCcceeEEEeccCCceEE
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGR----VGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~----i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      .+..|.+||+.+++. . .+. .....+..++|+| |++.|+..+.++.    ..||.+|...++. ..+..+...   .
T Consensus       166 ~~~~l~~~d~~~g~~-~-~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~---~  238 (396)
T 3c5m_A          166 PTCRLIKVDIETGEL-E-VIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEG---E  238 (396)
T ss_dssp             CCEEEEEEETTTCCE-E-EEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTT---E
T ss_pred             CcceEEEEECCCCcE-E-eec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCC---c
Confidence            456899999998753 2 222 1234588999999 7887877665433    2334377653322 122111100   1


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCC-----CcEEEeecCCcee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSD-----GAFNFWDKDSKQR  143 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~D-----g~i~iWd~~~~~~  143 (147)
                      .+...                              +|+|||++|+.++.+     +.|++||+.+++.
T Consensus       239 ~~~~~------------------------------~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          239 SCTHE------------------------------FWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             EEEEE------------------------------EECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             cccce------------------------------EECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence            12233                              999999887776543     4499999987754

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.37  E-value=2.8e-06  Score=61.26  Aligned_cols=102  Identities=5%  Similarity=-0.047  Sum_probs=68.5

Q ss_pred             eecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccCCceEEee
Q 032092            4 GTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSETCSV   82 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~~~~~~v   82 (147)
                      ...++.|.+||.......  .........+..|+++|+|..+++...++.|.+  +|....... ... .+-.     .+
T Consensus       167 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~--~~~~~~~~~-~~~~~~~~-----~p  236 (270)
T 1rwi_B          167 DTDNNRVVKLEAESNNQV--VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK--LLAGSTTST-VLPFTGLN-----TP  236 (270)
T ss_dssp             EGGGTEEEEECTTTCCEE--ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE--ECTTCSCCE-ECCCCSCS-----CE
T ss_pred             ECCCCEEEEEecCCCceE--eecccCCCCceEEEECCCCCEEEEECCCCcEEE--EcCCCCcce-eeccCCCC-----Cc
Confidence            345678999998875421  111111135789999999988888777889998  776532221 111 0100     12


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .++                              +++|+|+++++...++.|++++....+.++
T Consensus       237 ~~i------------------------------~~~~~g~l~v~~~~~~~v~~~~~~~~~~~~  269 (270)
T 1rwi_B          237 LAV------------------------------AVDSDRTVYVADRGNDRVVKLTSLEHHHHH  269 (270)
T ss_dssp             EEE------------------------------EECTTCCEEEEEGGGTEEEEECCCGGGSCC
T ss_pred             eeE------------------------------EECCCCCEEEEECCCCEEEEEcCCCccccC
Confidence            333                              999999999999999999999998877654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.36  E-value=2.7e-05  Score=63.48  Aligned_cols=140  Identities=13%  Similarity=0.068  Sum_probs=78.9

Q ss_pred             CeEeecCCeEEEEECC--CCccceeEecCCCCcceEEEEEc----cCCCEEEEEe-eCCeEEEEeecCCCCcceeEEEec
Q 032092            1 MVVGTADRNLVVFNLQ--NPQTEFKRINSPLKYQMRCVAAF----PDQQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKCH   73 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~--~~~~~~~~~~~~~~~~i~~la~s----pdg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~h   73 (147)
                      |.+++.|+.|.+||+.  +++ .+.++...  ...+.++|+    |||+++++++ .++++.+  +|..+.+.+.++...
T Consensus       211 lyv~~~dg~V~viD~~~~t~~-~v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V--iD~~t~~~~~~i~~~  285 (567)
T 1qks_A          211 LFVIGRDGKVNMIDLWMKEPT-TVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVI--MDGETLEPKKIQSTR  285 (567)
T ss_dssp             EEEEETTSEEEEEETTSSSCC-EEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEE--EETTTCCEEEEEECC
T ss_pred             EEEEcCCCeEEEEECCCCCCc-EeEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEE--EECCCCcEEEEEecc
Confidence            3567889999999996  654 34445432  236899999    7999877655 5699999  888877777665421


Q ss_pred             cC--CceEEeec-cceeeeecCC-----------Ccceeee--eeeee-eeee--ece-EEEEEecCCCeEEEeC-CCCc
Q 032092           74 RD--GSETCSVI-SFTSILAGDA-----------PKYSSFY--KVKRL-HLFV--KSH-VIVLFVQIHHTFATAG-SDGA  132 (147)
Q Consensus        74 ~~--~~~~~~v~-~~~~~~~~~~-----------~~~~~~~--~~~~~-~~~~--~~~-~~~~fspdg~~latg~-~Dg~  132 (147)
                      ..  ....+... .+..+..+.+           ..+.++.  ..+.. ...+  ..+ ..+.|+|||++|+++. .+++
T Consensus       286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~  365 (567)
T 1qks_A          286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK  365 (567)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             ccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence            10  00000000 0111111111           1111111  00000 0011  011 1368999998865544 5789


Q ss_pred             EEEeecCCceeee
Q 032092          133 FNFWDKDSKQRLK  145 (147)
Q Consensus       133 i~iWd~~~~~~~~  145 (147)
                      |.++|+++++++.
T Consensus       366 V~ViD~~t~kl~~  378 (567)
T 1qks_A          366 LVVIDTKEGKLVA  378 (567)
T ss_dssp             EEEEETTTTEEEE
T ss_pred             EEEEECCCCcEEE
Confidence            9999999998765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.35  E-value=2.4e-06  Score=63.62  Aligned_cols=97  Identities=12%  Similarity=0.131  Sum_probs=64.3

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      +.++.++.|   .++ +...+.... ..+.+++|+|+|+.++++..++.|.+  ||..+++.......+..     .+.+
T Consensus        24 ~~~~~~~~~---~~~-~~~~~~~~~-~~~~~~~~~~~g~l~~~~~~~~~i~~--~d~~~~~~~~~~~~~~~-----~~~~   91 (333)
T 2dg1_A           24 ISESELQTI---TAE-PWLEISKKG-LQLEGLNFDRQGQLFLLDVFEGNIFK--INPETKEIKRPFVSHKA-----NPAA   91 (333)
T ss_dssp             CCGGGSCEE---ECE-EEEEEESSC-CCEEEEEECTTSCEEEEETTTCEEEE--ECTTTCCEEEEEECSSS-----SEEE
T ss_pred             eecccCccc---ccc-eeEEEeccC-ccccCcEECCCCCEEEEECCCCEEEE--EeCCCCcEEEEeeCCCC-----Ccce
Confidence            456677777   222 233333222 34689999999998888888999988  77765544322222221     2344


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCC----CcEEEeecCCcee
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSD----GAFNFWDKDSKQR  143 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~D----g~i~iWd~~~~~~  143 (147)
                      +                              +|+|+|+++++...+    +.|.+||.++++.
T Consensus        92 i------------------------------~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A           92 I------------------------------KIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  124 (333)
T ss_dssp             E------------------------------EECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             E------------------------------EECCCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence            4                              899999988887766    6899999877654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.31  E-value=1.7e-05  Score=61.26  Aligned_cols=103  Identities=8%  Similarity=0.044  Sum_probs=68.2

Q ss_pred             cCCeEEEEECCCCccc-eeEecC------CC---CcceEEEEEccCCCEEEEEee----------CCeEEEEeecCCCCc
Q 032092            6 ADRNLVVFNLQNPQTE-FKRINS------PL---KYQMRCVAAFPDQQGFWVGSI----------EGRVGVHHLDDSQQS   65 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~-~~~~~~------~~---~~~i~~la~spdg~~l~~g~~----------dg~i~i~~~d~~~~~   65 (147)
                      ..+.+.+.|+...... ...+..      ..   ......++++||++.+.+...          .+.|.+  +|..+++
T Consensus       232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V--ID~~t~~  309 (373)
T 2mad_H          232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS--VTGLVGQ  309 (373)
T ss_pred             CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE--EECCCCE
Confidence            4568888898765321 111110      00   012445889999887766543          356877  8888877


Q ss_pred             ceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCC-eEEEeC-CCCcEEEeecCCcee
Q 032092           66 KNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH-TFATAG-SDGAFNFWDKDSKQR  143 (147)
Q Consensus        66 ~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~-~latg~-~Dg~i~iWd~~~~~~  143 (147)
                      .+.++..-.      .+..+                              +|+|||+ +++++. .++.|.++|+++++.
T Consensus       310 vv~~i~~g~------~p~~i------------------------------~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          310 TSSQISLGH------DVDAI------------------------------SVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             EEEEEECCC------CcCeE------------------------------EECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence            776664211      13455                              9999998 788877 589999999999988


Q ss_pred             eec
Q 032092          144 LKV  146 (147)
Q Consensus       144 ~~~  146 (147)
                      +++
T Consensus       354 v~~  356 (373)
T 2mad_H          354 DQS  356 (373)
T ss_pred             Eee
Confidence            764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.28  E-value=1.6e-05  Score=57.25  Aligned_cols=102  Identities=8%  Similarity=-0.038  Sum_probs=65.8

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v   82 (147)
                      ++..++.|.+||......  ..+.......+..|+++|+|+.+++...++.|.+  +|..+...........     ..+
T Consensus        82 v~~~~~~i~~~d~~~~~~--~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~--~~~~~~~~~~~~~~~~-----~~p  152 (270)
T 1rwi_B           82 VTDFNNRVVTLAAGSNNQ--TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVK--LAAGSKTQTVLPFTGL-----NDP  152 (270)
T ss_dssp             EEETTTEEEEECTTCSCC--EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEE--ECTTCCSCEECCCCSC-----CSC
T ss_pred             EEcCCCEEEEEeCCCceE--eeeecCCcCCCcceEECCCCCEEEEECCCCEEEE--EECCCceeEeeccccC-----CCc
Confidence            333478999999876532  2222122235789999999998888778899988  6654332211100000     023


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      ..+                              +++|+|+++++...++.|.+||...+..
T Consensus       153 ~~i------------------------------~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          153 DGV------------------------------AVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCE------------------------------EECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             eeE------------------------------EEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            444                              8899998888877788899999876543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.27  E-value=1.5e-05  Score=58.51  Aligned_cols=98  Identities=10%  Similarity=0.115  Sum_probs=66.2

Q ss_pred             ecCCeEEEEECC-CCcc----ceeEecCCCC-cceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            5 TADRNLVVFNLQ-NPQT----EFKRINSPLK-YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         5 s~dg~v~iwdi~-~~~~----~~~~~~~~~~-~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      ..++.|.+||+. +++.    .+..+. ... ..+..++++|+|+.+++...++.|.+  ||+.+++....+..+..   
T Consensus       195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~--~d~~~g~~~~~~~~~~~---  268 (314)
T 1pjx_A          195 TPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNNLLVANWGSSHIEV--FGPDGGQPKMRIRCPFE---  268 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCCEEEEEETTTEEEE--ECTTCBSCSEEEECSSS---
T ss_pred             CCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCCCCEEEEEcCCCEEEE--EcCCCCcEeEEEeCCCC---
Confidence            457889999986 3321    111111 111 34688999999998888878899988  78765665555543321   


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCC-eEEEeCCCCcEEEeecCC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH-TFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~-~latg~~Dg~i~iWd~~~  140 (147)
                        .+.++                              +|+|+|+ ++++...++.|..|+.+.
T Consensus       269 --~~~~i------------------------------~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          269 --KPSNL------------------------------HFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             --CEEEE------------------------------EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             --CceeE------------------------------EECCCCCEEEEEeCCCCeEEEEeCCC
Confidence              13344                              8999998 566666778999999875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.26  E-value=2.1e-06  Score=70.82  Aligned_cols=75  Identities=9%  Similarity=-0.044  Sum_probs=52.6

Q ss_pred             cceEEEEEccCCCEEEE-----EeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeee
Q 032092           31 YQMRCVAAFPDQQGFWV-----GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRL  105 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~-----g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  105 (147)
                      ..+.+++|||||++||.     |+.+.+|++  ||+.+++...  ..+....   ...+.                    
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v--~dl~tg~~~~--~~~~~~~---~~~~~--------------------  173 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHV--IDVDSGEWSK--VDVIEGG---KYATP--------------------  173 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEE--EETTTCCBCS--SCCBSCC---TTCCC--------------------
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEE--EECCCCCCcC--CcccCcc---cccce--------------------
Confidence            46889999999999994     444567988  7776665431  0111100   01334                    


Q ss_pred             eeeeeceEEEEEecCCCeEEEeCCCCc-------------EEEeecCCce
Q 032092          106 HLFVKSHVIVLFVQIHHTFATAGSDGA-------------FNFWDKDSKQ  142 (147)
Q Consensus       106 ~~~~~~~~~~~fspdg~~latg~~Dg~-------------i~iWd~~~~~  142 (147)
                                +|+|||+.|+.++.|..             |++|++.+++
T Consensus       174 ----------~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~  213 (695)
T 2bkl_A          174 ----------KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP  213 (695)
T ss_dssp             ----------EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG
T ss_pred             ----------EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc
Confidence                      99999999999988876             9999998765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.25  E-value=8.3e-06  Score=63.22  Aligned_cols=58  Identities=14%  Similarity=-0.062  Sum_probs=45.4

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe----------eCCeEEEEeecCCCCcceeEEEe
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS----------IEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~----------~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      +|.++|..+++. +.++..+. .+  .++++|||+++.++.          .+++|.+  +|+.+++...++..
T Consensus        47 ~vsvID~~t~~v-~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~Vsv--iD~~T~~vv~~I~v  114 (368)
T 1mda_H           47 ENWVSCAGCGVT-LGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEV--FDPVTFLPIADIEL  114 (368)
T ss_dssp             EEEEEETTTTEE-EEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEE--ECTTTCCEEEEEEE
T ss_pred             eEEEEECCCCeE-EEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEE--EECCCCCEEEEEEC
Confidence            889999999864 45554332 34  799999999888876          4788999  99999888888764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.19  E-value=1e-05  Score=63.17  Aligned_cols=96  Identities=19%  Similarity=0.064  Sum_probs=62.3

Q ss_pred             eEeecCCeEEEEECCCCc----------cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092            2 VVGTADRNLVVFNLQNPQ----------TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~----------~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      ++|+.+ .+++|++...+          ++....  ++.. |+.|+|  |++.|+++ .+|.|++  ||+++........
T Consensus        53 ~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d~~~L~v~-~~~~l~v--~dv~sl~~~~~~~  123 (388)
T 1xip_A           53 VAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--HGDQVLVS-TRNALYS--LDLEELSEFRTVT  123 (388)
T ss_dssp             EEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--ETTEEEEE-ESSEEEE--EESSSTTCEEEEE
T ss_pred             EEeCCC-EEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--CCCEEEEE-cCCcEEE--EEchhhhccCccc
Confidence            455555 56779876433          111122  2334 999999  89999999 8899999  7776544444444


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      .|..     ++.++                              .+.|.  .+|.+.+||.+.+||+++++.
T Consensus       124 ~~~~-----~v~~i------------------------------~~~~p--~~av~~~dG~L~v~dl~~~~~  158 (388)
T 1xip_A          124 SFEK-----PVFQL------------------------------KNVNN--TLVILNSVNDLSALDLRTKST  158 (388)
T ss_dssp             ECSS-----CEEEE------------------------------EECSS--EEEEEETTSEEEEEETTTCCE
T ss_pred             eeec-----ceeeE------------------------------EecCC--CEEEEECCCCEEEEEccCCcc
Confidence            4442     12222                              33332  389999999999999987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.17  E-value=2.3e-05  Score=58.43  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=27.2

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE   51 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d   51 (147)
                      .|.+||+.+++. . .+... .. +..++|+|||+.|+.++.+
T Consensus        86 ~l~~~~~~~g~~-~-~l~~~-~~-~~~~~wspdg~~l~~~~~~  124 (347)
T 2gop_A           86 EIWVADLETLSS-K-KILEA-KN-IRSLEWNEDSRKLLIVGFK  124 (347)
T ss_dssp             EEEEEETTTTEE-E-EEEEE-SE-EEEEEECTTSSEEEEEEEC
T ss_pred             eEEEEECCCCce-E-EEEcC-CC-ccceeECCCCCEEEEEEcc
Confidence            478889987742 2 22221 23 8899999999999988753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.10  E-value=1.9e-05  Score=57.99  Aligned_cols=73  Identities=8%  Similarity=-0.067  Sum_probs=55.6

Q ss_pred             ceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeee
Q 032092           32 QMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVK  110 (147)
Q Consensus        32 ~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (147)
                      ...+++|+|+|+ .++++..++.|..  ||+.++  ...+..+..     .+..+                         
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~--~~~~~~--~~~~~~~~~-----~~~~l-------------------------   74 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWA--WSDDGQ--LSPEMHPSH-----HQNGH-------------------------   74 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEE--EETTSC--EEEEESSCS-----SEEEE-------------------------
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEE--EECCCC--eEEEECCCC-----Cccee-------------------------
Confidence            367899999998 7788888999988  777654  444543322     23344                         


Q ss_pred             ceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092          111 SHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus       111 ~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                           +|+|+|+++++...++.|.+||.++++.
T Consensus        75 -----~~~~dg~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           75 -----CLNKQGHLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             -----EECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred             -----eECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence                 9999999999888889999999877654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.02  E-value=3.4e-05  Score=60.95  Aligned_cols=104  Identities=12%  Similarity=0.071  Sum_probs=69.0

Q ss_pred             ecCCeEEEEECCCCccce-eEecC------CCC---cceEEEEEccCCCEEEEEee----------CCeEEEEeecCCCC
Q 032092            5 TADRNLVVFNLQNPQTEF-KRINS------PLK---YQMRCVAAFPDQQGFWVGSI----------EGRVGVHHLDDSQQ   64 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~-~~~~~------~~~---~~i~~la~spdg~~l~~g~~----------dg~i~i~~~d~~~~   64 (147)
                      +..+.|.+.|+......+ ..+..      ...   .....++++||++.+.+...          +++|.+  +|..+.
T Consensus       283 s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsV--ID~~T~  360 (426)
T 3c75_H          283 TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVV--LNAETG  360 (426)
T ss_dssp             BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEE--EETTTC
T ss_pred             eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEE--EECCCC
Confidence            456788899987643111 11100      000   11234799999887666542          356887  899888


Q ss_pred             cceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCC-eEEEeC-CCCcEEEeecCCce
Q 032092           65 SKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH-TFATAG-SDGAFNFWDKDSKQ  142 (147)
Q Consensus        65 ~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~-~latg~-~Dg~i~iWd~~~~~  142 (147)
                      +.+.++..-.      .+..+                              +|+|||+ +++++. .++.|.++|+.+++
T Consensus       361 kvv~~I~vg~------~P~gi------------------------------a~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          361 ERINKIELGH------EIDSI------------------------------NVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             CEEEEEEEEE------EECEE------------------------------EECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEEECCC------CcCeE------------------------------EEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            8877765311      24555                              9999998 777777 59999999999999


Q ss_pred             eeec
Q 032092          143 RLKV  146 (147)
Q Consensus       143 ~~~~  146 (147)
                      .+++
T Consensus       405 vv~t  408 (426)
T 3c75_H          405 ELRS  408 (426)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8865

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.01  E-value=9.7e-06  Score=67.42  Aligned_cols=95  Identities=6%  Similarity=-0.058  Sum_probs=57.1

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCe--------------EEEEeecCCCCcce--eEEE
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGR--------------VGVHHLDDSQQSKN--FTFK   71 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~--------------i~i~~~d~~~~~~~--~~~~   71 (147)
                      ..|++||+.+++. .....  ....+..++|+|| +.|+.++.++.              |.+  +++.++...  ..+.
T Consensus       189 ~~i~v~dl~tg~~-~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~--~~lgt~~~~~~lv~~  262 (741)
T 1yr2_A          189 RTVKFVGVADGKP-LADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL--HRLGTPQSADQPVFA  262 (741)
T ss_dssp             EEEEEEETTTCCE-EEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE--EETTSCGGGCEEEEC
T ss_pred             EEEEEEECCCCCC-CCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE--EECCCCchhCEEEec
Confidence            4699999999863 22111  1112357899999 99998887664              444  565443321  1111


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC-----cEEEeecCCc
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG-----AFNFWDKDSK  141 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg-----~i~iWd~~~~  141 (147)
                      ......   .+                              .+++|||||++|+..+.++     .|++||+.++
T Consensus       263 ~~~~~~---~~------------------------------~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          263 TPELPK---RG------------------------------HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             CTTCTT---CE------------------------------EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             cCCCCe---EE------------------------------EEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence            110000   01                              1239999999888776544     8999998765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.97  E-value=8.3e-05  Score=58.01  Aligned_cols=106  Identities=14%  Similarity=0.072  Sum_probs=70.2

Q ss_pred             EeecCCeEEEEECCCCcc-ceeEec--------CC-CCcceEEEEEccCCCEEEEEee----------CCeEEEEeecCC
Q 032092            3 VGTADRNLVVFNLQNPQT-EFKRIN--------SP-LKYQMRCVAAFPDQQGFWVGSI----------EGRVGVHHLDDS   62 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~-~~~~~~--------~~-~~~~i~~la~spdg~~l~~g~~----------dg~i~i~~~d~~   62 (147)
                      ..+.+|.|++.|+..... ..+.+.        .. .......++++|+++.+.+...          .++|.+  +|+.
T Consensus       242 ~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v--iD~~  319 (386)
T 3sjl_D          242 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV--LDAK  319 (386)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE--EETT
T ss_pred             EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE--EECC
Confidence            346678999999987542 112221        00 0012346888999888776543          135655  9998


Q ss_pred             CCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCC-eEEE-eCCCCcEEEeecCC
Q 032092           63 QQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH-TFAT-AGSDGAFNFWDKDS  140 (147)
Q Consensus        63 ~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~-~lat-g~~Dg~i~iWd~~~  140 (147)
                      +++.+.++..-.      .++++                              +|+||++ +|++ ...+++|.++|..+
T Consensus       320 t~kv~~~i~vg~------~~~~l------------------------------avs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          320 TGERLAKFEMGH------EIDSI------------------------------NVSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             TCCEEEEEEEEE------EECEE------------------------------EECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             CCeEEEEEECCC------CcceE------------------------------EECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            888877764211      34555                              9999996 5555 56699999999999


Q ss_pred             ceeeec
Q 032092          141 KQRLKV  146 (147)
Q Consensus       141 ~~~~~~  146 (147)
                      ++.+++
T Consensus       364 ~k~~~~  369 (386)
T 3sjl_D          364 GEELRS  369 (386)
T ss_dssp             CCEEEE
T ss_pred             CcEEEE
Confidence            998875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.93  E-value=0.0015  Score=47.98  Aligned_cols=56  Identities=14%  Similarity=0.083  Sum_probs=37.2

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      +...++.|..||..+++.  ..+..  ...+.+++++|+|+.++ +. ++.|.+  +|..+++.
T Consensus        30 ~d~~~~~i~~~d~~~~~~--~~~~~--~~~~~~i~~~~dG~l~v-~~-~~~l~~--~d~~~g~~   85 (297)
T 3g4e_A           30 VDIPAKKVCRWDSFTKQV--QRVTM--DAPVSSVALRQSGGYVA-TI-GTKFCA--LNWKEQSA   85 (297)
T ss_dssp             EETTTTEEEEEETTTCCE--EEEEC--SSCEEEEEEBTTSSEEE-EE-TTEEEE--EETTTTEE
T ss_pred             EECCCCEEEEEECCCCcE--EEEeC--CCceEEEEECCCCCEEE-EE-CCeEEE--EECCCCcE
Confidence            445578899999887643  23322  24589999999999544 44 567877  67655443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.91  E-value=0.00022  Score=52.64  Aligned_cols=82  Identities=12%  Similarity=0.023  Sum_probs=54.2

Q ss_pred             eEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCccee--EEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeee
Q 032092           33 MRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNF--TFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFV  109 (147)
Q Consensus        33 i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~--~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (147)
                      .+.++|+||++.+ ++.+.++.|.++++|..++....  .+.....  ....+..+                        
T Consensus       151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~--~~~~p~g~------------------------  204 (297)
T 3g4e_A          151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK--EEQIPDGM------------------------  204 (297)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG--GGCEEEEE------------------------
T ss_pred             ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC--CCCCCCee------------------------
Confidence            5789999999865 55566899999666655554321  1110000  00012333                        


Q ss_pred             eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092          110 KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       110 ~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                            ++.|+|+++++...++.|..||.++++.+.+
T Consensus       205 ------~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~  235 (297)
T 3g4e_A          205 ------CIDAEGKLWVACYNGGRVIRLDPVTGKRLQT  235 (297)
T ss_dssp             ------EEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred             ------EECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence                  8999999888887788899999988877653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.90  E-value=6.8e-05  Score=58.05  Aligned_cols=74  Identities=11%  Similarity=0.097  Sum_probs=54.1

Q ss_pred             EEEccCCCEEEEEee-C--------CeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeee
Q 032092           36 VAAFPDQQGFWVGSI-E--------GRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLH  106 (147)
Q Consensus        36 la~spdg~~l~~g~~-d--------g~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  106 (147)
                      ++++||++.+.++.. +        +.+.+  +|..+++.+.++....      .+..+                     
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V--iD~~t~~vv~~i~vg~------~p~gi---------------------  319 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSS--VTASVGQTSGPISNGH------DSDAI---------------------  319 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEE--EESSSCCEEECCEEEE------EECEE---------------------
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEE--EECCCCeEEEEEECCC------CcceE---------------------
Confidence            789999988776543 2        34557  7888777766554321      24455                     


Q ss_pred             eeeeceEEEEEecCCC-eEEEeC-CCCcEEEeecCCceeeecC
Q 032092          107 LFVKSHVIVLFVQIHH-TFATAG-SDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       107 ~~~~~~~~~~fspdg~-~latg~-~Dg~i~iWd~~~~~~~~~~  147 (147)
                               +|+|||+ .+++.. .+++|.++|+.+++.++++
T Consensus       320 ---------~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I  353 (368)
T 1mda_H          320 ---------IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             ---------EECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             ---------EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence                     9999996 567776 6999999999999988763

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.85  E-value=0.00031  Score=57.18  Aligned_cols=31  Identities=19%  Similarity=0.110  Sum_probs=24.6

Q ss_pred             EecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       117 fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ....+.++..++.||.++.||.++++.+.+|
T Consensus       471 ~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          471 LYTKGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence            3444566677889999999999999998764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.84  E-value=0.00023  Score=52.85  Aligned_cols=101  Identities=9%  Similarity=-0.003  Sum_probs=66.9

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      .+.+.+|.|+.+|+++++.. ..+. +.  ......+.++++.| ++.-.++.+.+  +|..+.+.+.++..-       
T Consensus        69 ~stG~~g~v~~iD~~Tgkv~-~~~l-~~--~~FgeGit~~g~~Ly~ltw~~~~v~V--~D~~Tl~~~~ti~~~-------  135 (268)
T 3nok_A           69 ESTGHQGTLRQLSLESAQPV-WMER-LG--NIFAEGLASDGERLYQLTWTEGLLFT--WSGMPPQRERTTRYS-------  135 (268)
T ss_dssp             EEETTTTEEEECCSSCSSCS-EEEE-CT--TCCEEEEEECSSCEEEEESSSCEEEE--EETTTTEEEEEEECS-------
T ss_pred             EEcCCCCEEEEEECCCCcEE-eEEC-CC--CcceeEEEEeCCEEEEEEccCCEEEE--EECCcCcEEEEEeCC-------
Confidence            35567788999999999753 3332 21  23343344555554 44445788888  899888888777631       


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                       ....                              ..++|++.|..+..++.|.++|.++.+.+.+
T Consensus       136 -~eGw------------------------------GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~  170 (268)
T 3nok_A          136 -GEGW------------------------------GLCYWNGKLVRSDGGTMLTFHEPDGFALVGA  170 (268)
T ss_dssp             -SCCC------------------------------CEEEETTEEEEECSSSEEEEECTTTCCEEEE
T ss_pred             -Ccee------------------------------EEecCCCEEEEECCCCEEEEEcCCCCeEEEE
Confidence             1122                              5567887777777788899999888777653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.84  E-value=0.0002  Score=53.14  Aligned_cols=105  Identities=6%  Similarity=-0.024  Sum_probs=70.5

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      -.++.+.++|..+.+. +.++..+ . + ....++|||+.+.++..++++.+  +|+.+.+...++..-........++.
T Consensus        83 ~~~~~v~viD~~t~~v-~~~i~~g-~-~-~g~glt~Dg~~l~vs~gs~~l~v--iD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           83 WLKNIGFIYDRRTLSN-IKNFTHQ-M-K-DGWGLATDGKILYGSDGTSILYE--IDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             TTCSEEEEEETTTTEE-EEEEECC-S-S-SCCEEEECSSSEEEECSSSEEEE--ECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             ecCCEEEEEECCCCcE-EEEEECC-C-C-CeEEEEECCCEEEEECCCCeEEE--EECCCCcEEEEEEECCCCccccccee
Confidence            4578999999998854 4555432 0 1 13457789888887778888888  99988776666542111100001233


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +                              .|. +|+.+++...++.|.+-|.++++.+.+
T Consensus       157 l------------------------------e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~  187 (266)
T 2iwa_A          157 L------------------------------EYI-NGEVWANIWQTDCIARISAKDGTLLGW  187 (266)
T ss_dssp             E------------------------------EEE-TTEEEEEETTSSEEEEEETTTCCEEEE
T ss_pred             E------------------------------EEE-CCEEEEecCCCCeEEEEECCCCcEEEE
Confidence            3                              777 777777777788999999999988764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.83  E-value=0.00023  Score=56.58  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=71.5

Q ss_pred             eEeecCCeEEEEECCCC-cc--ceeEec------CCCCcceEEEEEccCCCEEEEEeeC------CeEEEEeecCCCCcc
Q 032092            2 VVGTADRNLVVFNLQNP-QT--EFKRIN------SPLKYQMRCVAAFPDQQGFWVGSIE------GRVGVHHLDDSQQSK   66 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~-~~--~~~~~~------~~~~~~i~~la~spdg~~l~~g~~d------g~i~i~~~d~~~~~~   66 (147)
                      +.|-.++.|.++|+.+. .+  ..+.++      .........+.++|+| .+++...+      |.+.+  +|..+++.
T Consensus       100 v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v--lD~~T~~v  176 (462)
T 2ece_A          100 VPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM--LDHYSFEP  176 (462)
T ss_dssp             EEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE--ECTTTCCE
T ss_pred             EccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE--EECCCCeE
Confidence            45667889999999754 22  233342      0011124567889999 77766665      78888  89988777


Q ss_pred             eeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC------------------
Q 032092           67 NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG------------------  128 (147)
Q Consensus        67 ~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~------------------  128 (147)
                      +.++..-... . .-.+.+                              -|+|+++.+++..                  
T Consensus       177 ~~~~~~~~~~-~-~~~Yd~------------------------------~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~  224 (462)
T 2ece_A          177 LGKWEIDRGD-Q-YLAYDF------------------------------WWNLPNEVLVSSEWAVPNTIEDGLKLEHLKD  224 (462)
T ss_dssp             EEECCSBCTT-C-CCCCCE------------------------------EEETTTTEEEECBCCCHHHHTTCCCTTTHHH
T ss_pred             EEEEccCCCC-c-cccceE------------------------------EECCCCCEEEEccCcCccccccccchhhhhh
Confidence            7666421110 0 001123                              7899999988884                  


Q ss_pred             -CCCcEEEeecCCceeeec
Q 032092          129 -SDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       129 -~Dg~i~iWd~~~~~~~~~  146 (147)
                       .+.+|.+||+.+++.+.+
T Consensus       225 ~~~d~V~v~D~~~~k~~~t  243 (462)
T 2ece_A          225 RYGNRIHFWDLRKRKRIHS  243 (462)
T ss_dssp             HSCCEEEEEETTTTEEEEE
T ss_pred             ccCCEEEEEECCCCcEeeE
Confidence             367899999998877654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.82  E-value=0.00048  Score=49.69  Aligned_cols=93  Identities=8%  Similarity=0.067  Sum_probs=58.2

Q ss_pred             cCCeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            6 ADRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      .++.|.+||.. ++  +..+.. .....+.+|+++|+|+.+++...++.|..  +|.. ++ ...+.......   .+..
T Consensus        34 ~~~~v~~~d~~-~~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~--~~~~-g~-~~~~~~~~~~~---~~~~  103 (299)
T 2z2n_A           34 KANMISCINLD-GK--ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGR--ITKK-GI-IKEYTLPNPDS---APYG  103 (299)
T ss_dssp             TTTEEEEECTT-CC--EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE--ECTT-SC-EEEEECSSTTC---CEEE
T ss_pred             CCCcEEEEcCC-CC--eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEE--ECCC-Cc-EEEEeCCCcCC---Ccee
Confidence            36889999988 53  223221 12245889999999998888777888888  7764 32 22222110000   1222


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                      +                              ++.|+|+++++...++.|..||.
T Consensus       104 i------------------------------~~~~~g~l~v~~~~~~~i~~~d~  127 (299)
T 2z2n_A          104 I------------------------------TEGPNGDIWFTEMNGNRIGRITD  127 (299)
T ss_dssp             E------------------------------EECTTSCEEEEETTTTEEEEECT
T ss_pred             e------------------------------EECCCCCEEEEecCCceEEEECC
Confidence            2                              77788877777766777888876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.82  E-value=0.0021  Score=46.88  Aligned_cols=135  Identities=10%  Similarity=-0.034  Sum_probs=73.5

Q ss_pred             EeecCCeEEEEECCCCccceeEe-cC---C-CCcceEEEEEccCCCEEEEEeeC---------------CeEEEEeecCC
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRI-NS---P-LKYQMRCVAAFPDQQGFWVGSIE---------------GRVGVHHLDDS   62 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~-~~---~-~~~~i~~la~spdg~~l~~g~~d---------------g~i~i~~~d~~   62 (147)
                      +++..+.|.+||.. ++.  ..+ ..   . ....+.+++++|+|+.+++...+               +.|..  +|..
T Consensus        87 v~~~~~~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~  161 (314)
T 1pjx_A           87 VADMRLGLLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC--FTTD  161 (314)
T ss_dssp             EEETTTEEEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE--ECTT
T ss_pred             EEECCCCEEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE--ECCC
Confidence            44445578999988 542  222 11   1 11247899999999888776655               45544  7765


Q ss_pred             CCcceeEEEeccCC--ceEEe----eccceeeee-cCCCcceeeeeee--e-----eeeeee-----ceEEEEEecCCCe
Q 032092           63 QQSKNFTFKCHRDG--SETCS----VISFTSILA-GDAPKYSSFYKVK--R-----LHLFVK-----SHVIVLFVQIHHT  123 (147)
Q Consensus        63 ~~~~~~~~~~h~~~--~~~~~----v~~~~~~~~-~~~~~~~~~~~~~--~-----~~~~~~-----~~~~~~fspdg~~  123 (147)
                       ++...... +...  ...+.    ...-.+..+ ..+..+..+..-.  +     ....+.     ....+++.|+|++
T Consensus       162 -g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  239 (314)
T 1pjx_A          162 -GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL  239 (314)
T ss_dssp             -SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred             -CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence             44322221 1111  11222    111112233 2333444433110  1     111222     1346899999999


Q ss_pred             EEEeCCCCcEEEeecCCceee
Q 032092          124 FATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus       124 latg~~Dg~i~iWd~~~~~~~  144 (147)
                      +++...++.|.+||.++++.+
T Consensus       240 ~v~~~~~~~i~~~d~~~g~~~  260 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDGGQPK  260 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCS
T ss_pred             EEEEcCCCEEEEEcCCCCcEe
Confidence            888878889999998866554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.81  E-value=0.0003  Score=52.24  Aligned_cols=104  Identities=7%  Similarity=-0.123  Sum_probs=70.8

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      -.++.+.+||.++.+. +.++..+..    ...+.+|++.|+.+..+++|.+  +|+.+.+...+++..........++.
T Consensus       113 w~~~~v~V~D~~Tl~~-~~ti~~~~e----GwGLt~Dg~~L~vSdGs~~l~~--iDp~T~~v~~~I~V~~~g~~v~~lNe  185 (268)
T 3nok_A          113 WTEGLLFTWSGMPPQR-ERTTRYSGE----GWGLCYWNGKLVRSDGGTMLTF--HEPDGFALVGAVQVKLRGQPVELINE  185 (268)
T ss_dssp             SSSCEEEEEETTTTEE-EEEEECSSC----CCCEEEETTEEEEECSSSEEEE--ECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             ccCCEEEEEECCcCcE-EEEEeCCCc----eeEEecCCCEEEEECCCCEEEE--EcCCCCeEEEEEEeCCCCcccccccc
Confidence            3478999999999864 455543222    2344578998888877888887  99988877766653222110011233


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +                              .|. +|+.+|..-.+..|.+-|.++++.+.+
T Consensus       186 L------------------------------e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~  216 (268)
T 3nok_A          186 L------------------------------ECA-NGVIYANIWHSSDVLEIDPATGTVVGV  216 (268)
T ss_dssp             E------------------------------EEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred             c------------------------------EEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence            3                              665 788788777788999999999988764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.81  E-value=0.00067  Score=48.94  Aligned_cols=97  Identities=6%  Similarity=0.014  Sum_probs=59.7

Q ss_pred             ecCCeEEEEECCCCccceeEecCC-CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeec
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSP-LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVI   83 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~-~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~   83 (147)
                      ..++.|.+||. +++.  ..+..+ ....+..+++.|+|+.+++...++.|..  +|. +++.. .+......   ..+.
T Consensus       117 ~~~~~i~~~d~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~--~~~-~g~~~-~~~~~~~~---~~~~  186 (299)
T 2z2n_A          117 MNGNRIGRITD-DGKI--REYELPNKGSYPSFITLGSDNALWFTENQNNAIGR--ITE-SGDIT-EFKIPTPA---SGPV  186 (299)
T ss_dssp             TTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE--ECT-TCCEE-EEECSSTT---CCEE
T ss_pred             cCCceEEEECC-CCCE--EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE--EcC-CCcEE-EeeCCCCC---Ccce
Confidence            45678999998 5432  222211 2235789999999988887777788888  777 44432 22111100   0122


Q ss_pred             cceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           84 SFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      .+                              ++.|+|+++++...++.|.+||. +++
T Consensus       187 ~i------------------------------~~~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          187 GI------------------------------TKGNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             EE------------------------------EECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             eE------------------------------EECCCCCEEEEccCCceEEEECC-CCc
Confidence            23                              77788877777666777888887 543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.80  E-value=0.00057  Score=55.78  Aligned_cols=29  Identities=28%  Similarity=0.342  Sum_probs=24.1

Q ss_pred             cCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          119 QIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       119 pdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ..+.++..|+.||.++.||.++++.+.+|
T Consensus       495 tagglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          495 TAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence            34566777899999999999999998764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.78  E-value=0.00055  Score=50.66  Aligned_cols=100  Identities=8%  Similarity=0.020  Sum_probs=63.4

Q ss_pred             EeecCC--eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            3 VGTADR--NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         3 ~gs~dg--~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      +.+.+|  .|+.+|+++++. ..++.-+  .......+.++++.+.... .++.+.+  +|..+.+.+.++....     
T Consensus        58 stG~~g~S~v~~vD~~Tgkv-~~~~~l~--~~~FgeGit~~g~~ly~ltw~~~~v~v--~D~~t~~~~~ti~~~~-----  127 (262)
T 3nol_A           58 STGLNGRSSIRKVDIESGKT-LQQIELG--KRYFGEGISDWKDKIVGLTWKNGLGFV--WNIRNLRQVRSFNYDG-----  127 (262)
T ss_dssp             EEEETTEEEEEEECTTTCCE-EEEEECC--TTCCEEEEEEETTEEEEEESSSSEEEE--EETTTCCEEEEEECSS-----
T ss_pred             ECCCCCCceEEEEECCCCcE-EEEEecC--CccceeEEEEeCCEEEEEEeeCCEEEE--EECccCcEEEEEECCC-----
Confidence            344444  899999999964 3444322  2234444555666665554 4788888  8988888888776311     


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                         ...                              .+++|++.|..+..++.|.++|.++.+.+.
T Consensus       128 ---eG~------------------------------glt~dg~~L~~SdGs~~i~~iDp~T~~v~~  160 (262)
T 3nol_A          128 ---EGW------------------------------GLTHNDQYLIMSDGTPVLRFLDPESLTPVR  160 (262)
T ss_dssp             ---CCC------------------------------CEEECSSCEEECCSSSEEEEECTTTCSEEE
T ss_pred             ---Cce------------------------------EEecCCCEEEEECCCCeEEEEcCCCCeEEE
Confidence               222                              556677666665556778888887766554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.74  E-value=0.00041  Score=53.99  Aligned_cols=103  Identities=11%  Similarity=0.079  Sum_probs=60.7

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCC--eEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG--RVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg--~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +...++.|++||..+++.  ..+..... ... ++|+|+++.|++++.++  .|.+  +|...+.....+...... ...
T Consensus       147 ~d~~~~~I~~id~~~g~~--~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~--~d~~~~~~~~~~g~~~~~-~~~  219 (409)
T 3hrp_A          147 YQRDDPRVRLISVDDNKV--TTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYV--YMKASGWAPTRIGQLGST-FSG  219 (409)
T ss_dssp             EETTTTEEEEEETTTTEE--EEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEE--EEGGGTTCEEEEEECCTT-SCS
T ss_pred             EecCCCcEEEEECCCCEE--EEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEE--EEcCCCceeEEeeeccch-hcC
Confidence            334568999999987642  22222222 234 99999999998888876  5665  776544332222100000 001


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      .+..+                              +++|++..|..+..++.|+.||.+++.
T Consensus       220 ~p~~i------------------------------av~p~~g~lyv~d~~~~I~~~d~~~~~  251 (409)
T 3hrp_A          220 KIGAV------------------------------ALDETEEWLYFVDSNKNFGRFNVKTQE  251 (409)
T ss_dssp             CCCBC------------------------------EECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred             CcEEE------------------------------EEeCCCCeEEEEECCCcEEEEECCCCC
Confidence            23445                              889944334446668889999987654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.72  E-value=0.00072  Score=52.62  Aligned_cols=114  Identities=9%  Similarity=-0.086  Sum_probs=66.6

Q ss_pred             EeecCCeEEEEECCCCccceeEe----cCCCCcc--eEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRI----NSPLKYQ--MRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~----~~~~~~~--i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      ++..++.|+.||..++..  ..+    .......  ...|+|+|+ +..+++-..+++|+.  +|.. +. ..++.++..
T Consensus       235 v~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~--~~~~-g~-~~~~~g~~~  308 (409)
T 3hrp_A          235 FVDSNKNFGRFNVKTQEV--TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYK--ITPD-GE-CEWFCGSAT  308 (409)
T ss_dssp             EECTTCEEEEEETTTCCE--EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEE--ECTT-CC-EEEEEECTT
T ss_pred             EEECCCcEEEEECCCCCE--EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEE--EecC-CC-EEEEEeCCC
Confidence            345567899999987642  122    1111111  139999995 666777777899988  6653 22 334444321


Q ss_pred             C-ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-CCCcEEEeecCCcee
Q 032092           76 G-SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-SDGAFNFWDKDSKQR  143 (147)
Q Consensus        76 ~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~Dg~i~iWd~~~~~~  143 (147)
                      . +.   .           ++       ......+.....++++|+|+++++-. .++.|+.||..+++.
T Consensus       309 ~~g~---~-----------dg-------~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          309 QKTV---Q-----------DG-------LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             CCSC---B-----------CE-------EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             CCCc---C-----------CC-------cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            0 00   0           00       00000111223459999999888888 899999999777654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.68  E-value=0.0015  Score=48.91  Aligned_cols=96  Identities=8%  Similarity=-0.099  Sum_probs=54.4

Q ss_pred             EeecCCeEEEEECCCCccceeEecCC----CCcceEEEEEccCCCEEEEEeeC----CeEEEEeecCCCCcceeEEEecc
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSP----LKYQMRCVAAFPDQQGFWVGSIE----GRVGVHHLDDSQQSKNFTFKCHR   74 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~----~~~~i~~la~spdg~~l~~g~~d----g~i~i~~~d~~~~~~~~~~~~h~   74 (147)
                      +++. ..|.+||..+++.  ..+...    ....+++++++|+|+.+++...+    +...||.+|  +++.. .+..+.
T Consensus       105 v~~~-~gl~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~  178 (326)
T 2ghs_A          105 IASD-DGLFLRDTATGVL--TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI  178 (326)
T ss_dssp             EEET-TEEEEEETTTCCE--EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred             EEEC-CCEEEEECCCCcE--EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence            3443 4488999987752  222111    11347899999999876654322    233444466  23321 221110


Q ss_pred             CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeE-EEeCCCCcEEEeecC
Q 032092           75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTF-ATAGSDGAFNFWDKD  139 (147)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l-atg~~Dg~i~iWd~~  139 (147)
                      .     ..+.+                              +|+|||+.| ++...++.|.+||.+
T Consensus       179 ~-----~~~~i------------------------------~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          179 S-----IPNSI------------------------------CFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             S-----SEEEE------------------------------EECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             c-----ccCCe------------------------------EEcCCCCEEEEEECCCCEEEEEEcc
Confidence            0     12233                              999999765 455567899999985

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.68  E-value=0.0015  Score=48.43  Aligned_cols=98  Identities=8%  Similarity=-0.090  Sum_probs=63.3

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF   85 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~   85 (147)
                      ++.|+++|+.+++. ...+.-+..  .....+.++++.+. +.-.++.+.+  +|..+.+.+.++..-  .     ....
T Consensus        43 ~s~v~~iD~~tg~v-~~~i~l~~~--~fgeGi~~~g~~lyv~t~~~~~v~v--iD~~t~~v~~~i~~g--~-----~~g~  110 (266)
T 2iwa_A           43 RSSVRQVALQTGKV-ENIHKMDDS--YFGEGLTLLNEKLYQVVWLKNIGFI--YDRRTLSNIKNFTHQ--M-----KDGW  110 (266)
T ss_dssp             TCEEEEEETTTCCE-EEEEECCTT--CCEEEEEEETTEEEEEETTCSEEEE--EETTTTEEEEEEECC--S-----SSCC
T ss_pred             CCEEEEEECCCCCE-EEEEecCCC--cceEEEEEeCCEEEEEEecCCEEEE--EECCCCcEEEEEECC--C-----CCeE
Confidence            57999999999864 344432211  12223334455554 4455788888  888877777776521  0     1223


Q ss_pred             eeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           86 TSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                                                    .++|||+.|..+..++.|.+.|.++.+.+.+
T Consensus       111 ------------------------------glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~  141 (266)
T 2iwa_A          111 ------------------------------GLATDGKILYGSDGTSILYEIDPHTFKLIKK  141 (266)
T ss_dssp             ------------------------------EEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred             ------------------------------EEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence                                          6788987666666788999999988776543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.67  E-value=0.00038  Score=51.54  Aligned_cols=103  Identities=14%  Similarity=0.067  Sum_probs=69.2

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF   85 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~   85 (147)
                      .++.+.+||.++.+. ..++..+.    ....+++|++.|+.++.+++|.+  +|+.+.+...++...........++.+
T Consensus       105 ~~~~v~v~D~~t~~~-~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~--iDp~T~~v~~~I~V~~~g~~~~~lNEL  177 (262)
T 3nol_A          105 KNGLGFVWNIRNLRQ-VRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRF--LDPESLTPVRTITVTAHGEELPELNEL  177 (262)
T ss_dssp             SSSEEEEEETTTCCE-EEEEECSS----CCCCEEECSSCEEECCSSSEEEE--ECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred             eCCEEEEEECccCcE-EEEEECCC----CceEEecCCCEEEEECCCCeEEE--EcCCCCeEEEEEEeccCCcccccccee
Confidence            478999999999864 45554322    23455588888888776777877  999887777665432111000012223


Q ss_pred             eeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           86 TSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                                                    .|. +|+.+|..-.+..|.+-|.++++.+.+
T Consensus       178 ------------------------------e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~  207 (262)
T 3nol_A          178 ------------------------------EWV-DGEIFANVWQTNKIVRIDPETGKVTGI  207 (262)
T ss_dssp             ------------------------------EEE-TTEEEEEETTSSEEEEECTTTCBEEEE
T ss_pred             ------------------------------EEE-CCEEEEEEccCCeEEEEECCCCcEEEE
Confidence                                          665 788788777788999999999988754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.66  E-value=0.00072  Score=50.93  Aligned_cols=74  Identities=3%  Similarity=0.066  Sum_probs=47.9

Q ss_pred             eEEEEEccCCCEEEEEeeCCeEEEEeecCCC---Cc-----ce--eEEEeccCCceEEeeccceeeeecCCCcceeeeee
Q 032092           33 MRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ---QS-----KN--FTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKV  102 (147)
Q Consensus        33 i~~la~spdg~~l~~g~~dg~i~i~~~d~~~---~~-----~~--~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  102 (147)
                      +..|+++|||+.|.++..++. ++|.++...   +.     ..  ....++..     .++.+                 
T Consensus       197 ~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-----~pdgi-----------------  253 (343)
T 2qe8_A          197 VNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKP-----ICDGI-----------------  253 (343)
T ss_dssp             EEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECC-----SCSCE-----------------
T ss_pred             cceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCC-----CCceE-----------------
Confidence            578999999998888877764 344465321   10     00  01112211     13344                 


Q ss_pred             eeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092          103 KRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus       103 ~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                                   ++.|+|+++++...++.|.+||.++++
T Consensus       254 -------------a~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          254 -------------SIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             -------------EECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             -------------EECCCCCEEEEccCCCeEEEEECCCCC
Confidence                         999999999998889999999985554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.65  E-value=0.00023  Score=59.14  Aligned_cols=73  Identities=8%  Similarity=-0.015  Sum_probs=50.7

Q ss_pred             cceEEEEEccCCCEEEEEeeC-C----eEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeee
Q 032092           31 YQMRCVAAFPDQQGFWVGSIE-G----RVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRL  105 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~~d-g----~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  105 (147)
                      ..+..++|||||++||.++.+ |    +|++  ||+.+++.... ..+.     ....+.                    
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v--~dl~tg~~~~~-~~~~-----~~~~~~--------------------  214 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKF--VGVADGKPLAD-ELKW-----VKFSGL--------------------  214 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEE--EETTTCCEEEE-EEEE-----EESCCC--------------------
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEE--EECCCCCCCCc-cCCC-----ceeccE--------------------
Confidence            357889999999999987664 3    4777  78776655321 1111     112344                    


Q ss_pred             eeeeeceEEEEEecCCCeEEEeCCCCc--------------EEEeecCCce
Q 032092          106 HLFVKSHVIVLFVQIHHTFATAGSDGA--------------FNFWDKDSKQ  142 (147)
Q Consensus       106 ~~~~~~~~~~~fspdg~~latg~~Dg~--------------i~iWd~~~~~  142 (147)
                                +|+|| +.|+.++.|+.              |++|++.+++
T Consensus       215 ----------~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~  254 (741)
T 1yr2_A          215 ----------AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ  254 (741)
T ss_dssp             ----------EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCG
T ss_pred             ----------EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc
Confidence                      99999 98888877654              8999987654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.64  E-value=0.0008  Score=49.66  Aligned_cols=55  Identities=7%  Similarity=-0.078  Sum_probs=37.4

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      +++..++.|..||. +++.  ..+..+ ...+..++++|+|+.+++...++.|.+  +|..
T Consensus        61 ~~d~~~~~i~~~~~-~g~~--~~~~~~-~~~~~gl~~d~dG~l~v~~~~~~~v~~--~~~~  115 (305)
T 3dr2_A           61 WSDLVGRRVLGWRE-DGTV--DVLLDA-TAFTNGNAVDAQQRLVHCEHGRRAITR--SDAD  115 (305)
T ss_dssp             EEETTTTEEEEEET-TSCE--EEEEES-CSCEEEEEECTTSCEEEEETTTTEEEE--ECTT
T ss_pred             EEECCCCEEEEEeC-CCCE--EEEeCC-CCccceeeECCCCCEEEEECCCCEEEE--ECCC
Confidence            45566789999998 4432  222222 234789999999997776666688888  6664

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.64  E-value=0.00096  Score=55.18  Aligned_cols=32  Identities=13%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             EEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          116 LFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       116 ~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+...+.+++.|+.||.++.||.++++.+..|
T Consensus       464 ~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          464 TLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             EEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence            56667788888999999999999999988653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.60  E-value=0.0014  Score=48.00  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=68.5

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      -.++.+.+||.++.+. ..++..+..    ...+.+|++.|..+..+++|.+  +|+.+.+...+++...+......++.
T Consensus        82 w~~~~v~v~D~~tl~~-~~ti~~~~~----Gwglt~dg~~L~vSdgs~~l~~--iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           82 WRNHEGFVYDLATLTP-RARFRYPGE----GWALTSDDSHLYMSDGTAVIRK--LDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             SSSSEEEEEETTTTEE-EEEEECSSC----CCEEEECSSCEEEECSSSEEEE--ECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             eeCCEEEEEECCcCcE-EEEEeCCCC----ceEEeeCCCEEEEECCCCeEEE--EeCCCCeEEEEEEEccCCccccccee
Confidence            3478999999999863 455543322    2345578888888777888887  99988777766643221100001222


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +                              .|. +|+.+|..-.+..|.+-|.++++.+..
T Consensus       155 L------------------------------e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~  185 (243)
T 3mbr_X          155 L------------------------------EWV-NGELLANVWLTSRIARIDPASGKVVAW  185 (243)
T ss_dssp             E------------------------------EEE-TTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred             e------------------------------EEe-CCEEEEEECCCCeEEEEECCCCCEEEE
Confidence            2                              443 777777776777899999999988754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.59  E-value=0.0026  Score=46.56  Aligned_cols=96  Identities=9%  Similarity=0.047  Sum_probs=63.1

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccce
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFT   86 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~   86 (147)
                      ..|+.+|+++++. ..++.-+.  ......+.++++.+. ..-.++.+.+  +|..+.+.+.++..-        .... 
T Consensus        43 S~v~~vD~~tgkv-~~~~~l~~--~~fgeGi~~~~~~ly~ltw~~~~v~v--~D~~tl~~~~ti~~~--------~~Gw-  108 (243)
T 3mbr_X           43 SSVRKVDLETGRI-LQRAEVPP--PYFGAGIVAWRDRLIQLTWRNHEGFV--YDLATLTPRARFRYP--------GEGW-  108 (243)
T ss_dssp             CEEEEEETTTCCE-EEEEECCT--TCCEEEEEEETTEEEEEESSSSEEEE--EETTTTEEEEEEECS--------SCCC-
T ss_pred             ceEEEEECCCCCE-EEEEeCCC--CcceeEEEEeCCEEEEEEeeCCEEEE--EECCcCcEEEEEeCC--------CCce-
Confidence            4899999999964 34443221  233344444455544 4445788888  898888888777631        1223 


Q ss_pred             eeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           87 SILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                                                   .+++|++.|..+..++.|.++|.++.+.+.+
T Consensus       109 -----------------------------glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~  139 (243)
T 3mbr_X          109 -----------------------------ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGS  139 (243)
T ss_dssp             -----------------------------EEEECSSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred             -----------------------------EEeeCCCEEEEECCCCeEEEEeCCCCeEEEE
Confidence                                         6667887666666788899999988776653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.59  E-value=0.0025  Score=48.09  Aligned_cols=104  Identities=10%  Similarity=0.074  Sum_probs=63.9

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCC--------CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPL--------KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH   73 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~--------~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h   73 (147)
                      .+++.++.|..+|.++++..-. ...+.        ...+.+ ....++..+.+++.+|.+..  +|..+++....+...
T Consensus        57 ~~~~~~g~v~a~d~~tG~~~W~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a--~d~~tG~~~W~~~~~  132 (376)
T 3q7m_A           57 YAADRAGLVKALNADDGKEIWS-VSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYA--LNTSDGTVAWQTKVA  132 (376)
T ss_dssp             EEECTTSEEEEEETTTCCEEEE-EECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEE--EETTTCCEEEEEECS
T ss_pred             EEEcCCCeEEEEEccCCceeee-ecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEE--EECCCCCEEEEEeCC
Confidence            5667789999999999864322 22111        112222 11224678888899999988  898888887766533


Q ss_pred             cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..      +.+.                             +...  +..++.++.++.+..+|.++++.+.+
T Consensus       133 ~~------~~~~-----------------------------p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~  168 (376)
T 3q7m_A          133 GE------ALSR-----------------------------PVVS--DGLVLIHTSNGQLQALNEADGAVKWT  168 (376)
T ss_dssp             SC------CCSC-----------------------------CEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             Cc------eEcC-----------------------------CEEE--CCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            21      1111                             0221  23566667788888888888776654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.56  E-value=0.0011  Score=55.00  Aligned_cols=111  Identities=9%  Similarity=0.175  Sum_probs=71.6

Q ss_pred             CCeEEEEECCCCccceeEecCCCC------------------------------cceEEEEEccCCCEEEEEeeCC----
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLK------------------------------YQMRCVAAFPDQQGFWVGSIEG----   52 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~------------------------------~~i~~la~spdg~~l~~g~~dg----   52 (147)
                      +|.|+.||.++++..-+....+..                              .....++++|+++.+.+++.++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            689999999999753222111110                              0113578999999988887765    


Q ss_pred             ---------------eEEEEeecCCCCcceeEEEeccCCceEEe-eccceeeeecCCCcceeeeeeeeeeeeeeceEEEE
Q 032092           53 ---------------RVGVHHLDDSQQSKNFTFKCHRDGSETCS-VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL  116 (147)
Q Consensus        53 ---------------~i~i~~~d~~~~~~~~~~~~h~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (147)
                                     .|..  +|.++|+....++........+. ..+.                           ..+.
T Consensus       269 ~~~~~~~~gd~~~~~sv~A--lD~~TG~~~W~~~~~~~d~wd~~~~~~p---------------------------~l~~  319 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVA--LDPDTGKYKWHYQETPGDNWDYTSTQPM---------------------------ILAD  319 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEE--ECTTTCCEEEEEESSTTCCSCCCCCSCC---------------------------EEEE
T ss_pred             CCCCCccCCCCeeeEEEEE--EECCCCCEEEEEecCCCcccccccCCCc---------------------------EEEe
Confidence                           3666  89999998888764221100000 0110                           0013


Q ss_pred             EecCC---CeEEEeCCCCcEEEeecCCceeeec
Q 032092          117 FVQIH---HTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       117 fspdg---~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ...+|   +.++.++.+|.++++|.++++.+..
T Consensus       320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~  352 (677)
T 1kb0_A          320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA  352 (677)
T ss_dssp             EEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             cccCCcEeeEEEEECCCCEEEEEECCCCCEecc
Confidence            44577   6899999999999999999998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.55  E-value=0.0023  Score=46.07  Aligned_cols=53  Identities=9%  Similarity=0.210  Sum_probs=37.2

Q ss_pred             ecCCeEEEEECCCCccceeEecCC-CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSP-LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~-~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      ..++.|.+||.. ++.  ..+..+ ....+..|++.|+|+.+++...++.|..  +|..
T Consensus        38 ~~~~~v~~~~~~-~~~--~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~--~d~~   91 (300)
T 2qc5_A           38 HKANKISSLDQS-GRI--KEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGK--LSKK   91 (300)
T ss_dssp             TTTTEEEEECTT-SCE--EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE--ECTT
T ss_pred             CCCCeEEEECCC-Cce--EEEECCCCCCcceeEEECCCCCEEEEecCCCeEEE--ECCC
Confidence            357889999988 532  222222 1235889999999998887777888888  7775

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.51  E-value=0.0039  Score=44.85  Aligned_cols=52  Identities=8%  Similarity=0.011  Sum_probs=36.5

Q ss_pred             cCCeEEEEECCCCccceeEecCC-CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSP-LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~-~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      .++.|..||.. ++.  ..+..+ ....+.++++.|+|+.+++...++.|..  +|..
T Consensus        81 ~~~~v~~~d~~-g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~--~~~~  133 (300)
T 2qc5_A           81 GANKIGKLSKK-GGF--TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGK--LTAD  133 (300)
T ss_dssp             TTTEEEEECTT-SCE--EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE--ECTT
T ss_pred             CCCeEEEECCC-CCe--EEecCCCCCCCCccceECCCCCEEEEccCCCeEEE--ECCC
Confidence            46789999988 532  222211 2245889999999998888777888887  7765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.48  E-value=0.0033  Score=47.46  Aligned_cols=108  Identities=7%  Similarity=0.079  Sum_probs=65.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      |.+++.++.|..+|.++++..- +...... ...+..+.  +..+++++.+|.+..  +|.++++....+..........
T Consensus       106 v~v~~~~g~l~a~d~~tG~~~W-~~~~~~~-~~~~p~~~--~~~v~v~~~~g~l~~--~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          106 VYIGSEKAQVYALNTSDGTVAW-QTKVAGE-ALSRPVVS--DGLVLIHTSNGQLQA--LNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE-EEECSSC-CCSCCEEE--TTEEEEECTTSEEEE--EETTTCCEEEEEECCC-----C
T ss_pred             EEEEcCCCEEEEEECCCCCEEE-EEeCCCc-eEcCCEEE--CCEEEEEcCCCeEEE--EECCCCcEEEEEeCCCCceeec
Confidence            3567889999999999986432 2221111 11111222  557888899999988  8998888877765322100000


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .....                              ...  +..+..+..++.+..+|.++++.+.+
T Consensus       180 ~~~~~------------------------------~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~  213 (376)
T 3q7m_A          180 GESAP------------------------------TTA--FGAAVVGGDNGRVSAVLMEQGQMIWQ  213 (376)
T ss_dssp             CCCCC------------------------------EEE--TTEEEECCTTTEEEEEETTTCCEEEE
T ss_pred             CCCCc------------------------------EEE--CCEEEEEcCCCEEEEEECCCCcEEEE
Confidence            00111                              222  34566777888999999988887654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.44  E-value=0.00042  Score=57.27  Aligned_cols=45  Identities=11%  Similarity=0.260  Sum_probs=29.9

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCe
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGR   53 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~   53 (147)
                      ++...|++||+.+++.....+.   .....+++|+ ||+.|+.++.+..
T Consensus       152 ~~~~~i~v~dl~tg~~~~~~~~---~~k~~~~~Ws-Dg~~l~y~~~~~~  196 (693)
T 3iuj_A          152 SDWREIHLMDVESKQPLETPLK---DVKFSGISWL-GNEGFFYSSYDKP  196 (693)
T ss_dssp             CCEEEEEEEETTTCSEEEEEEE---EEESCCCEEE-TTTEEEEEESSCC
T ss_pred             CceEEEEEEECCCCCCCccccC---CceeccEEEe-CCCEEEEEEecCc
Confidence            3446899999999863211111   0113578999 9999999887743

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.43  E-value=0.0029  Score=51.88  Aligned_cols=30  Identities=20%  Similarity=0.142  Sum_probs=24.5

Q ss_pred             ecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          118 VQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       118 spdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ...+.++..|+.||.++.+|.++++.+.+|
T Consensus       481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence            335566677899999999999999998764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.41  E-value=0.0024  Score=47.77  Aligned_cols=57  Identities=11%  Similarity=0.065  Sum_probs=38.1

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      +++..++.|..||..+++.  ..+..  ...+.+++++|+|+.+++. . +.|.+  +|..+++.
T Consensus        65 ~~d~~~~~i~~~d~~~~~~--~~~~~--~~~v~~i~~~~dg~l~v~~-~-~gl~~--~d~~~g~~  121 (326)
T 2ghs_A           65 WFNILERELHELHLASGRK--TVHAL--PFMGSALAKISDSKQLIAS-D-DGLFL--RDTATGVL  121 (326)
T ss_dssp             EEEGGGTEEEEEETTTTEE--EEEEC--SSCEEEEEEEETTEEEEEE-T-TEEEE--EETTTCCE
T ss_pred             EEECCCCEEEEEECCCCcE--EEEEC--CCcceEEEEeCCCeEEEEE-C-CCEEE--EECCCCcE
Confidence            3455678999999988642  22322  2358999999999876654 4 44766  77765543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.29  E-value=0.0016  Score=48.00  Aligned_cols=27  Identities=7%  Similarity=0.030  Sum_probs=20.8

Q ss_pred             EEEecCCCeEEEeCCC------CcEEEeecCCc
Q 032092          115 VLFVQIHHTFATAGSD------GAFNFWDKDSK  141 (147)
Q Consensus       115 ~~fspdg~~latg~~D------g~i~iWd~~~~  141 (147)
                      ++|+|||+.|+.+..+      +.|.+||+..+
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            3999999877666554      68999998643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.28  E-value=0.0016  Score=54.10  Aligned_cols=138  Identities=10%  Similarity=0.063  Sum_probs=70.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCC-CCcceEEEEEcc--CCCEEEEEe------eCCeEEEEeecCCCCcceeEEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSP-LKYQMRCVAAFP--DQQGFWVGS------IEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~-~~~~i~~la~sp--dg~~l~~g~------~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      |++++.|+.|..+|.++++..-+ .... .......+..+|  .+..+++++      .+|.|..  +|.++|+.+.++.
T Consensus       124 v~v~~~dg~l~AlDa~TG~~~W~-~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a--~D~~tG~~~W~~~  200 (689)
T 1yiq_A          124 VYVGVLDGRLEAIDAKTGQRAWS-VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTA--YDAETGKEAWRFY  200 (689)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEE-EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEE--EETTTCCEEEEEE
T ss_pred             EEEEccCCEEEEEECCCCCEeee-ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEE--EECCCCcEEEEec
Confidence            35778899999999999975322 2211 100001111122  134555554      3788988  9999999988775


Q ss_pred             eccCCceEEeeccceeeee-cC-CCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCc-----------------
Q 032092           72 CHRDGSETCSVISFTSILA-GD-APKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGA-----------------  132 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~-----------------  132 (147)
                      .-..... .....-.+..+ .. ....+.....-...+     ..+++.|++.+++.+..++.                 
T Consensus       201 ~~~~~p~-~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w-----~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~  274 (689)
T 1yiq_A          201 TVPGDPK-LPPEGKGMEIAAKTWFGDAYVEQGGGGTAW-----DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFL  274 (689)
T ss_dssp             SSCCCTT-SCCCSHHHHHHHTTCCSSTHHHHCEECCCC-----SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred             ccCCCcc-cccccccccccccccCCceeeecCCCCccc-----cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence            2110000 00000000000 00 000000000000000     02389998888888888764                 


Q ss_pred             --EEEeecCCceeeecC
Q 032092          133 --FNFWDKDSKQRLKVF  147 (147)
Q Consensus       133 --i~iWd~~~~~~~~~~  147 (147)
                        |..||.++++.+..|
T Consensus       275 ~~v~AlD~~TG~~~W~~  291 (689)
T 1yiq_A          275 SSIVAVNADTGEYVWHY  291 (689)
T ss_dssp             TEEEEEETTTCCEEEEE
T ss_pred             eeEEEEEccCCceeEee
Confidence              999999999987653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.26  E-value=0.001  Score=55.02  Aligned_cols=72  Identities=11%  Similarity=0.000  Sum_probs=48.8

Q ss_pred             cceEEEEEccCCCEEEEEe-----eCCeEEEEeecCCCCcceeE-EEeccCCceEEeeccceeeeecCCCcceeeeeeee
Q 032092           31 YQMRCVAAFPDQQGFWVGS-----IEGRVGVHHLDDSQQSKNFT-FKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKR  104 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~-----~dg~i~i~~~d~~~~~~~~~-~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  104 (147)
                      ..+..++|||||+++|.+.     .+.+|++  +|+.+++.+.. +...       ...+.                   
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v--~dl~tg~~~~~~~~~~-------k~~~~-------------------  180 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHL--MDVESKQPLETPLKDV-------KFSGI-------------------  180 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEE--EETTTCSEEEEEEEEE-------ESCCC-------------------
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEE--EECCCCCCCccccCCc-------eeccE-------------------
Confidence            3578899999999998543     2345777  78877764321 1110       02344                   


Q ss_pred             eeeeeeceEEEEEecCCCeEEEeCCCCc-------------EEEeecCCce
Q 032092          105 LHLFVKSHVIVLFVQIHHTFATAGSDGA-------------FNFWDKDSKQ  142 (147)
Q Consensus       105 ~~~~~~~~~~~~fspdg~~latg~~Dg~-------------i~iWd~~~~~  142 (147)
                                 +|+ ||+.|+-++.|..             |++|++.+..
T Consensus       181 -----------~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~  219 (693)
T 3iuj_A          181 -----------SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ  219 (693)
T ss_dssp             -----------EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCG
T ss_pred             -----------EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCc
Confidence                       999 9998888877743             9999987653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.21  E-value=0.0059  Score=48.58  Aligned_cols=54  Identities=6%  Similarity=0.110  Sum_probs=37.2

Q ss_pred             CCeEEEEECCCCccceeEecCCCC-cceEEEEE--ccCCCEEEEEe------eCCeEEEEeecC
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLK-YQMRCVAA--FPDQQGFWVGS------IEGRVGVHHLDD   61 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~-~~i~~la~--spdg~~l~~g~------~dg~i~i~~~d~   61 (147)
                      +.+|.+||+.+++ ..+++.-+.. ...+.|.|  +|++++..+++      .+++|.+|.+|.
T Consensus       227 ~d~V~v~D~~~~k-~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~  289 (462)
T 2ece_A          227 GNRIHFWDLRKRK-RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED  289 (462)
T ss_dssp             CCEEEEEETTTTE-EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred             CCEEEEEECCCCc-EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence            6899999999874 4555543211 23456656  99999876665      577898877764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.17  E-value=0.0051  Score=45.04  Aligned_cols=135  Identities=13%  Similarity=0.079  Sum_probs=72.3

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      .+|+.++.|..+|.. ++.. ..... ....+.++...+++. +.+|+.++.+..  +|.. ++....+...........
T Consensus       111 ~v~t~~~~l~~~d~~-g~~~-~~~~~-~~~~~~~~~~~~~g~-l~vgt~~~~l~~--~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          111 YVTSMDGHLYAINTD-GTEK-WRFKT-KKAIYATPIVSEDGT-IYVGSNDNYLYA--INPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             EEECTTSEEEEECTT-SCEE-EEEEC-SSCCCSCCEECTTSC-EEEECTTSEEEE--ECTT-SCEEEEEECSSCCCSCCE
T ss_pred             EEEecCCEEEEEcCC-CCEE-EEEcC-CCceeeeeEEcCCCE-EEEEcCCCEEEE--ECCC-CCEeEEEecCCCceeeeE
Confidence            567788999999998 6432 22222 222356677777776 556777888888  8887 666655543221111011


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeee----eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFV----KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +.....+-.+. ..+..+..-.+..+..    ....+++..++|++++ ++.++.+..+| .+++.+..
T Consensus       184 ~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~-~~g~~~~~  249 (330)
T 3hxj_A          184 IGKDGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAIN-PDGTEKWR  249 (330)
T ss_dssp             ECTTCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEEC-TTSCEEEE
T ss_pred             EcCCCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEEC-CCCCEeEE
Confidence            11111122222 3322222111111111    1123457777776544 55689999996 77777654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.96  E-value=0.0015  Score=53.61  Aligned_cols=105  Identities=14%  Similarity=0.094  Sum_probs=59.5

Q ss_pred             CeEEEEECCC--CccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            8 RNLVVFNLQN--PQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         8 g~v~iwdi~~--~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      +.|.+.|.++  ++.....+..+  ....++.++|||+++++ +-.+++|.+  +|..+.+..  +.+ +..     ...
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsV--id~~~~~~~--~~~-~l~-----~~~  321 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTV--LDVTRFDAV--FYE-NAD-----PRS  321 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEE--EEGGGHHHH--HHS-CCC-----GGG
T ss_pred             CcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEE--EECcccccc--ccc-ccC-----ccc
Confidence            4589999998  43212333222  23568999999997654 557899999  665432111  000 000     000


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      .            +.    .....-.+...++|+|||+...+.--|+.|..||+++
T Consensus       322 ~------------v~----~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          322 A------------VV----AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             G------------EE----ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             c------------eE----EEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            0            00    0000111223449999995556677799999999876

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.87  E-value=0.0028  Score=51.97  Aligned_cols=58  Identities=12%  Similarity=0.086  Sum_probs=40.2

Q ss_pred             eEeecCCeEEEEECCCCcc-----------ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092            2 VVGTADRNLVVFNLQNPQT-----------EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~-----------~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~   61 (147)
                      +++-.+.+|.++|+.+.+.           ....+.  .....+-++|+|||..+.+.-.|++|.+|+++.
T Consensus       293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            4555678999999996531           111221  122468899999996677888899999966654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.85  E-value=0.022  Score=46.99  Aligned_cols=83  Identities=12%  Similarity=0.161  Sum_probs=54.6

Q ss_pred             EEEEccCCCEEEEEeeCCe-------------------EEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCc
Q 032092           35 CVAAFPDQQGFWVGSIEGR-------------------VGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPK   95 (147)
Q Consensus        35 ~la~spdg~~l~~g~~dg~-------------------i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~   95 (147)
                      ++++.|+.+.+.+++.++.                   |..  +|.++|+....++........+...+- .+       
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A--lD~~tG~~~W~~~~~~~~~wd~~~~~~-~~-------  303 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA--IRPDTGKLAWHYQVTPGDSWDFTATQQ-IT-------  303 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE--ECTTTCCEEEEEESSTTCCSCCCCCSC-EE-------
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE--EcCCCCceeeEeecCCCccccccCCCC-cE-------
Confidence            4788998888888887764                   666  899999988887642111000000000 00       


Q ss_pred             ceeeeeeeeeeeeeeceEEEEEecCCC---eEEEeCCCCcEEEeecCCceeee
Q 032092           96 YSSFYKVKRLHLFVKSHVIVLFVQIHH---TFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~fspdg~---~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                                        ...+..+|+   .++.++.+|.++++|.++++.+.
T Consensus       304 ------------------~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          304 ------------------LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             ------------------EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             ------------------EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence                              003334664   68999999999999999999873

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.84  E-value=0.0055  Score=46.03  Aligned_cols=83  Identities=7%  Similarity=-0.047  Sum_probs=53.9

Q ss_pred             cceEEEEEccCCCEEEEEee-----CCeEEEEeecCCCCcceeEEEeccCCc-eEEeeccceeeeecCCCcceeeeeeee
Q 032092           31 YQMRCVAAFPDQQGFWVGSI-----EGRVGVHHLDDSQQSKNFTFKCHRDGS-ETCSVISFTSILAGDAPKYSSFYKVKR  104 (147)
Q Consensus        31 ~~i~~la~spdg~~l~~g~~-----dg~i~i~~~d~~~~~~~~~~~~h~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~  104 (147)
                      ..+..|+++|+|+.+++-..     +++|.+  ||+.+++.+.++....... ....++.+                   
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~--~d~~tg~~~~~~~~~~~~~~~~~~~~~v-------------------  125 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA--WDTLNNQLSRVIYLPPPITLSNSFVNDL-------------------  125 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEE--EETTTTEEEEEEECCTTTSCTTCCCCEE-------------------
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE--EECCCCeEEEEEECChhhcccccccceE-------------------
Confidence            35889999999987776544     578877  8887777655554321100 00012333                   


Q ss_pred             eeeeeeceEEEEEecCC-CeEEEeC---CCCcEEEeecCCceeee
Q 032092          105 LHLFVKSHVIVLFVQIH-HTFATAG---SDGAFNFWDKDSKQRLK  145 (147)
Q Consensus       105 ~~~~~~~~~~~~fspdg-~~latg~---~Dg~i~iWd~~~~~~~~  145 (147)
                                 ++.|++ ..+++..   .++.|.+||.++++..+
T Consensus       126 -----------~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r  159 (343)
T 2qe8_A          126 -----------AVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR  159 (343)
T ss_dssp             -----------EEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred             -----------EEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence                       899864 5556665   67899999998776543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.83  E-value=0.021  Score=43.60  Aligned_cols=102  Identities=13%  Similarity=0.126  Sum_probs=65.5

Q ss_pred             CCeEEEEECC---CCccceeEecCC-----------CCcceEEEEEccCCCEEEEEeeC-CeEEEEeecCCCCcceeEEE
Q 032092            7 DRNLVVFNLQ---NPQTEFKRINSP-----------LKYQMRCVAAFPDQQGFWVGSIE-GRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         7 dg~v~iwdi~---~~~~~~~~~~~~-----------~~~~i~~la~spdg~~l~~g~~d-g~i~i~~~d~~~~~~~~~~~   71 (147)
                      +..|..||+.   +++.....-...           .......|++.++|+.+++++.- +.|..  +++. ++....+-
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r--V~pd-G~~~~~~~  175 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR--VSAD-GKTVSTFA  175 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE--ECTT-SCCEEEEE
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE--EeCC-CCEEeeee
Confidence            6789999999   665432211100           11247899999999999999998 88866  7765 34333332


Q ss_pred             -eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           72 -CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        72 -~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                       ...+.......+.                              ++++|||++|+....+|.+.-+|+.+.
T Consensus       176 ~~~~~~~~~~G~nG------------------------------Iv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          176 WESGNGGQRPGYSG------------------------------ITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             ECCCCSSSCCSCSE------------------------------EEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             ecCCCcccccCcce------------------------------EEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence             1111100011233                              399999988888877999999997743

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.81  E-value=0.0052  Score=51.38  Aligned_cols=53  Identities=13%  Similarity=0.094  Sum_probs=32.1

Q ss_pred             CeEEEEECCCC-ccceeEecCCCCcceEEEEEccCCCEEEEEeeCC--e-EEEEeecCCCC
Q 032092            8 RNLVVFNLQNP-QTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG--R-VGVHHLDDSQQ   64 (147)
Q Consensus         8 g~v~iwdi~~~-~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg--~-i~i~~~d~~~~   64 (147)
                      .+|+++|+.++ +.....+.    .....++|+|||+.|+....|.  . -.||.+++.++
T Consensus       201 ~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~  257 (751)
T 2xe4_A          201 YTIEFKRISDPSQTIADKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL  257 (751)
T ss_dssp             EEEEEEETTCTTCCCCCCEE----EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred             EEEEEEECCCCCEeCCcccc----CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence            36999999987 53111111    1234689999999988877652  1 23443665443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.50  E-value=0.032  Score=41.24  Aligned_cols=25  Identities=0%  Similarity=-0.296  Sum_probs=18.1

Q ss_pred             EEecCCCeE-EEeCCCCcEEEeecCC
Q 032092          116 LFVQIHHTF-ATAGSDGAFNFWDKDS  140 (147)
Q Consensus       116 ~fspdg~~l-atg~~Dg~i~iWd~~~  140 (147)
                      +|+|+|+.| ++-..++.|..+++..
T Consensus       191 a~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          191 EVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCC
Confidence            899998744 4445567888888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.41  E-value=0.038  Score=40.25  Aligned_cols=134  Identities=11%  Similarity=0.034  Sum_probs=69.0

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      .+|+.++.|..||.. ++. ......+ ...+.++.+.+++..++ |+  +.+..  +| .+++....+...........
T Consensus       151 ~vgt~~~~l~~~d~~-g~~-~~~~~~~-~~~~~~~~~d~~g~l~v-~t--~~l~~--~d-~~g~~~~~~~~~~~~~~~~~  221 (330)
T 3hxj_A          151 YVGSNDNYLYAINPD-GTE-KWRFKTN-DAITSAASIGKDGTIYF-GS--DKVYA--IN-PDGTEKWNFYAGYWTVTRPA  221 (330)
T ss_dssp             EEECTTSEEEEECTT-SCE-EEEEECS-SCCCSCCEECTTCCEEE-ES--SSEEE--EC-TTSCEEEEECCSSCCCSCCE
T ss_pred             EEEcCCCEEEEECCC-CCE-eEEEecC-CCceeeeEEcCCCEEEE-Ee--CEEEE--EC-CCCcEEEEEccCCcceeceE
Confidence            567778999999998 643 2223221 23466778877787554 44  66777  77 55666555542221111111


Q ss_pred             eccc-eeeeecCCCcceeeeeeeeeeeeeec----eEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           82 VISF-TSILAGDAPKYSSFYKVKRLHLFVKS----HVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        82 v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +... .+.++..+..+..+..-.+..+....    ...+...++|+ |..|+.+|.+..+| .+++.+..
T Consensus       222 ~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d-~~g~~~~~  289 (330)
T 3hxj_A          222 ISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN-PDGTEKWN  289 (330)
T ss_dssp             ECTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC-TTSCEEEE
T ss_pred             ECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC-CCCcEEEE
Confidence            1111 12222222332222211111111111    12356655665 56677899999998 87777654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.39  E-value=0.041  Score=45.06  Aligned_cols=83  Identities=8%  Similarity=0.034  Sum_probs=52.6

Q ss_pred             EEEEccCCCEEEEEeeCC----------------eEEEEeecCCCCcceeEEEeccCCceEEee-ccceeeeecCCCcce
Q 032092           35 CVAAFPDQQGFWVGSIEG----------------RVGVHHLDDSQQSKNFTFKCHRDGSETCSV-ISFTSILAGDAPKYS   97 (147)
Q Consensus        35 ~la~spdg~~l~~g~~dg----------------~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v-~~~~~~~~~~~~~~~   97 (147)
                      .+++.|+...+..++.++                .|..  +|..+|+....++........+.. .+.  +         
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A--ld~~TG~~~W~~q~~~~d~wd~d~~~~p--~---------  311 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG--RDADTGEAKFGYQKTPHDEWDYAGVNVM--M---------  311 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE--EETTTCCEEEEEESSTTCSSCCCCCCCC--E---------
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE--EeCCCCceeeEeecCCCccccccCCCcc--E---------
Confidence            456777777887777653                6666  898899888877642211000000 010  0         


Q ss_pred             eeeeeeeeeeeeeceEEEEEe-cCC---CeEEEeCCCCcEEEeecCCceeeec
Q 032092           98 SFYKVKRLHLFVKSHVIVLFV-QIH---HTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~fs-pdg---~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                                      -+... .+|   +.++.++.+|.+++.|.++++.+..
T Consensus       312 ----------------l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  348 (599)
T 1w6s_A          312 ----------------LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (599)
T ss_dssp             ----------------EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ----------------EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence                            00222 567   5688888999999999999998764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.27  E-value=0.035  Score=45.50  Aligned_cols=99  Identities=9%  Similarity=-0.040  Sum_probs=55.8

Q ss_pred             eEEEEECCCCcc-ceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEEeeccce
Q 032092            9 NLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFT   86 (147)
Q Consensus         9 ~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~   86 (147)
                      .+.+||..+.+- .......+......++++.++++.+++|+. ++.+.+  ||+.+++  .+....-....   ..   
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~--yd~~t~~--W~~~~~~~~~R---~~---  289 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL--YDSSSDS--WIPGPDMQVAR---GY---  289 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE--EEGGGTE--EEECCCCSSCC---SS---
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE--ecCcCCc--eeECCCCCccc---cc---
Confidence            578899887642 111121111112335788899999999984 456777  7765432  11100000000   00   


Q ss_pred             eeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-CC-----CcEEEeecCCcee
Q 032092           87 SILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-SD-----GAFNFWDKDSKQR  143 (147)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~D-----g~i~iWd~~~~~~  143 (147)
                                                .+++..|+|++++.|| .+     ..+.+||.++.+.
T Consensus       290 --------------------------~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          290 --------------------------QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             --------------------------CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             --------------------------cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence                                      0126668999999988 44     5789999887653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.10  E-value=0.078  Score=42.99  Aligned_cols=83  Identities=10%  Similarity=0.029  Sum_probs=50.6

Q ss_pred             EEEEccCCCEEEEEeeC----------------CeEEEEeecCCCCcceeEEEeccCCceEEe-eccceeeeecCCCcce
Q 032092           35 CVAAFPDQQGFWVGSIE----------------GRVGVHHLDDSQQSKNFTFKCHRDGSETCS-VISFTSILAGDAPKYS   97 (147)
Q Consensus        35 ~la~spdg~~l~~g~~d----------------g~i~i~~~d~~~~~~~~~~~~h~~~~~~~~-v~~~~~~~~~~~~~~~   97 (147)
                      .+++.|+...+..++.+                +.|..  +|.++|+.+..++........+. +.+. .          
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~A--ld~~tG~~~W~~~~~~~d~~d~~~~~~p-~----------  305 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWG--RDLDTGMAKWGYQKTPHDEWDFAGVNQM-V----------  305 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEE--EETTTCCEEEEEESSTTCSSCCCCCCCC-E----------
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEE--EecCCCcEEEEecCCCCcccccccCCCC-E----------
Confidence            36677776676666542                24666  89888988877763211100000 0111 0          


Q ss_pred             eeeeeeeeeeeeeceEEEEEecCCC---eEEEeCCCCcEEEeecCCceeeec
Q 032092           98 SFYKVKRLHLFVKSHVIVLFVQIHH---TFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~fspdg~---~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                                      -+...++|+   .++.++.+|.+++.|.++++.+..
T Consensus       306 ----------------l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~  341 (571)
T 2ad6_A          306 ----------------LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             ----------------EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ----------------EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEee
Confidence                            013335774   678888899999999999988754

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.06  E-value=0.13  Score=41.83  Aligned_cols=28  Identities=18%  Similarity=0.188  Sum_probs=23.8

Q ss_pred             cCCC---eEEEeCCCCcEEEeecCCceeeec
Q 032092          119 QIHH---TFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       119 pdg~---~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+|+   .++.++.||.++++|.++++.+..
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  361 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNA  361 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEEEECCCceEEEEECCCCCEecc
Confidence            4674   788899999999999999998764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=95.92  E-value=0.2  Score=36.87  Aligned_cols=58  Identities=7%  Similarity=0.005  Sum_probs=34.2

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCC-------------------CcceEEEEEcc-CCCEEEEEeeCCeEEEEeecC
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPL-------------------KYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~-------------------~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~   61 (147)
                      .++..++.|..||..+++.  ..+..+.                   ...+..|++.| +|+ |.+++..+.+..  +|.
T Consensus        34 ~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~i~~--~d~  108 (322)
T 2fp8_A           34 YTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYHLSV--VGS  108 (322)
T ss_dssp             EEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTEEEE--ECT
T ss_pred             EEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCCEEE--EeC
Confidence            4566788999999876532  2221000                   01367899998 554 555555555766  776


Q ss_pred             CCC
Q 032092           62 SQQ   64 (147)
Q Consensus        62 ~~~   64 (147)
                      .++
T Consensus       109 ~~g  111 (322)
T 2fp8_A          109 EGG  111 (322)
T ss_dssp             TCE
T ss_pred             CCC
Confidence            543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.86  E-value=0.05  Score=45.45  Aligned_cols=31  Identities=13%  Similarity=0.053  Sum_probs=23.1

Q ss_pred             ceEEEEEc-cCCCEEEEEee-CC----eEEEEeecCCCC
Q 032092           32 QMRCVAAF-PDQQGFWVGSI-EG----RVGVHHLDDSQQ   64 (147)
Q Consensus        32 ~i~~la~s-pdg~~l~~g~~-dg----~i~i~~~d~~~~   64 (147)
                      .+...+|| |||+++|.+.. +|    +|++  +|+.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v--~dl~~g  211 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEF--KRISDP  211 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEE--EETTCT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEE--EECCCC
Confidence            57789999 99999986554 23    3766  777766

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.64  E-value=0.27  Score=35.97  Aligned_cols=57  Identities=12%  Similarity=-0.018  Sum_probs=31.4

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      .++.|..||.....  ......+  .....|++.|+|+.+++....+..+|+.+|..+++.
T Consensus        51 ~~~~I~~~d~~g~~--~~~~~~~--~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           51 EVGEIVSITPDGNQ--QIHATVE--GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             TTTEEEEECTTCCE--EEEEECS--SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCCeEEEECCCCce--EEEEeCC--CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            45666667665431  1122211  347889999999976655433332233367665554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.07  E-value=0.19  Score=36.89  Aligned_cols=29  Identities=17%  Similarity=0.197  Sum_probs=23.5

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      ....++++|+|+.+++-..+++|..  +|..
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~--~d~~   61 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVS--ITPD   61 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEE--ECTT
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEE--ECCC
Confidence            4678999999997777767899887  7765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.06  E-value=0.59  Score=33.19  Aligned_cols=50  Identities=10%  Similarity=0.114  Sum_probs=29.9

Q ss_pred             CeEEEEECCCCccceeEec-CCCCcceEEEEEccCCCEE-EEEeeCCeEEEEeecCC
Q 032092            8 RNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~   62 (147)
                      +.|..+++.....  ..+. ... .....|+++|+++.| ++-...++|..  +|..
T Consensus       146 ~~I~~~~~dg~~~--~~~~~~~~-~~P~gia~d~~~~~lyv~d~~~~~I~~--~~~~  197 (267)
T 1npe_A          146 PKIETSHMDGTNR--RILAQDNL-GLPNGLTFDAFSSQLCWVDAGTHRAEC--LNPA  197 (267)
T ss_dssp             CEEEEEETTSCCC--EEEECTTC-SCEEEEEEETTTTEEEEEETTTTEEEE--EETT
T ss_pred             cEEEEEecCCCCc--EEEEECCC-CCCcEEEEcCCCCEEEEEECCCCEEEE--EecC
Confidence            5677777654321  2221 122 246889999987655 55556688888  6664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.06  E-value=0.69  Score=35.96  Aligned_cols=40  Identities=8%  Similarity=0.125  Sum_probs=25.7

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI   50 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~   50 (147)
                      +.|+.+|+..++.  ..+.... .....|+++|+|+.|.+...
T Consensus       159 ~~I~~id~~~~~v--~~~~~~~-~~P~~ia~d~~G~~lyvad~  198 (430)
T 3tc9_A          159 HPTRLIDFEKEYV--STVYSGL-SKVRTICWTHEADSMIITND  198 (430)
T ss_dssp             EEEEEEETTTTEE--EEEECCC-SCEEEEEECTTSSEEEEEEC
T ss_pred             CcEEEEECCCCEE--EEEecCC-CCcceEEEeCCCCEEEEEeC
Confidence            6788888887532  2332222 34689999999995555443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.84  E-value=0.034  Score=42.48  Aligned_cols=116  Identities=7%  Similarity=0.029  Sum_probs=60.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEE--cc-CCCEEEEE-eeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAA--FP-DQQGFWVG-SIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~--sp-dg~~l~~g-~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      +++++.||.|.-.|..+|+..-+ +......++....-  .+ ++..++.. +.||.+..  +|..+|.....+..... 
T Consensus        13 V~v~t~dG~l~Ald~~tG~~~W~-~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a--~~~~~G~~~~~~~~~~l-   88 (339)
T 2be1_A           13 LIAADVEGGLHAVDRRNGHIIWS-IEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYY--FNAHQGLQKLPLSIRQL-   88 (339)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEE-ECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEE--EETTTEEEEEEEEHHHH-
T ss_pred             EEEEeCCCeEEEEECCCCcEEEE-ecCCccCCcEEecCCccccCCcEEEEEECCCCEEEE--EECCCCcEEeeeccccc-
Confidence            46789999999999999975322 22110012111110  11 23344443 68999987  88777654444332110 


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEE-ec----CCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLF-VQ----IHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-sp----dg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                           +..-. +...+.+                     .. -+    .+..+.+|+.+|.+.--|+++|+.+.+|
T Consensus        89 -----v~~SP-~~~~~~p---------------------vv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           89 -----VSTSP-LHLKTNI---------------------VVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             -----HTTCS-EEEECC-------------------------------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred             -----eeccc-cccCCCc---------------------eeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence                 00000 0000000                     11 00    3356778888888888888888887764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=94.77  E-value=0.72  Score=32.73  Aligned_cols=32  Identities=3%  Similarity=-0.016  Sum_probs=23.8

Q ss_pred             EEEecCCCeEEEeC-CCCcEEEeecCCceeeec
Q 032092          115 VLFVQIHHTFATAG-SDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       115 ~~fspdg~~latg~-~Dg~i~iWd~~~~~~~~~  146 (147)
                      ....+++..|..+. .++.|..+|.++++.+.+
T Consensus       212 ~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~  244 (267)
T 1npe_A          212 FAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDT  244 (267)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eEEEEeCCEEEEEECCCCeEEEEeCCCCCceEE
Confidence            47778886555444 568999999998988765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=94.70  E-value=0.71  Score=35.97  Aligned_cols=38  Identities=11%  Similarity=-0.068  Sum_probs=24.0

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG   48 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g   48 (147)
                      +.|+.+|..+++.  ..+.... .....|+++|+|+.+++.
T Consensus       162 ~~I~~id~~~g~v--~~~~~~~-~~P~giavd~dG~lyVad  199 (433)
T 4hw6_A          162 DAFRHVDFVNQYV--DIKTTNI-GQCADVNFTLNGDMVVVD  199 (433)
T ss_dssp             SCEEEEETTTTEE--EEECCCC-SCEEEEEECTTCCEEEEE
T ss_pred             CCEEEEECCCCEE--EEeecCC-CCccEEEECCCCCEEEEc
Confidence            6677778766542  2332222 247899999999955544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.54  E-value=0.77  Score=36.34  Aligned_cols=113  Identities=12%  Similarity=0.010  Sum_probs=62.7

Q ss_pred             ecCCeEEEEECCCCccceeEecCCC--Cc-ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcce-eEEE-eccCCceE
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPL--KY-QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN-FTFK-CHRDGSET   79 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~--~~-~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~-~~~~-~h~~~~~~   79 (147)
                      ..++.||.-++.... ..+.+.-+.  .+ .+..+..||+|++||.-+. ..|.|  ..+-.+... .... ........
T Consensus        38 a~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~V--v~LP~~~~~~~~~~~~~~~q~~t  113 (452)
T 3pbp_A           38 IQDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFV--MEVPWGYSNVEDVSIQDAFQIFH  113 (452)
T ss_dssp             EETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEE--EECCTTCSCCCCHHHHHTTEEEE
T ss_pred             EECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEE--EEecCccccCcccccccccceeE
Confidence            456888888888543 244443331  33 6888999999999998764 67888  554321100 0000 00000001


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC---CeEEEeCCCCcEEEeecCC
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH---HTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg---~~latg~~Dg~i~iWd~~~  140 (147)
                      +.+....   +..                =.....+.|||-+   ..|++=..|+.|++||+..
T Consensus       114 y~l~~~~---~~~----------------~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          114 YSIDEEE---VGP----------------KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             EEGGGCC-----C----------------CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             EEcCCcc---cCC----------------CCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            1111110   000                0112345999965   5788888999999999875

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.52  E-value=0.54  Score=35.98  Aligned_cols=28  Identities=7%  Similarity=-0.097  Sum_probs=20.6

Q ss_pred             EEEEEecCCCeEEEe-CCCCcEEEeecCC
Q 032092          113 VIVLFVQIHHTFATA-GSDGAFNFWDKDS  140 (147)
Q Consensus       113 ~~~~fspdg~~latg-~~Dg~i~iWd~~~  140 (147)
                      +.++|+||++.|..+ +..+.|..|+++.
T Consensus       224 NGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          224 NGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            345999999766554 4578899999863

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=93.58  E-value=1.2  Score=34.62  Aligned_cols=59  Identities=3%  Similarity=-0.089  Sum_probs=33.8

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCE-EEEEeeCCeEEEEeecCCCC
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQG-FWVGSIEGRVGVHHLDDSQQ   64 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~-l~~g~~dg~i~i~~~d~~~~   64 (147)
                      .++.|+.+|..++..............-..|+|+|+|+. +++-...++|..+++|..++
T Consensus       248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~  307 (433)
T 4hw6_A          248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETG  307 (433)
T ss_dssp             TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTC
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCc
Confidence            356777888776542111111111112346999999984 55555678898855554333

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.50  E-value=0.45  Score=38.85  Aligned_cols=29  Identities=17%  Similarity=0.055  Sum_probs=19.6

Q ss_pred             EEEEcc-CCCEEEEEeeCC-----------eEEEEeecCCCCc
Q 032092           35 CVAAFP-DQQGFWVGSIEG-----------RVGVHHLDDSQQS   65 (147)
Q Consensus        35 ~la~sp-dg~~l~~g~~dg-----------~i~i~~~d~~~~~   65 (147)
                      ..++.| +++.++.|+.++           .+.+  ||+.+++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~--yd~~t~~  230 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSS--WDPSTGI  230 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEE--ECTTTCC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEE--EeCCCCc
Confidence            567778 888888887643           3445  7776543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=93.39  E-value=2  Score=32.92  Aligned_cols=56  Identities=11%  Similarity=0.188  Sum_probs=36.9

Q ss_pred             EeecCCeEEEEECC---CCc---cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092            3 VGTADRNLVVFNLQ---NPQ---TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         3 ~gs~dg~v~iwdi~---~~~---~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      +...+|.+..|++.   +++   +++.++.-  ..++..++..|....|.++-.+.-  ||-+|..
T Consensus       148 V~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~Lyv~eEd~G--Iw~~da~  209 (355)
T 3amr_A          148 VTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYGRLYIAEEDEA--IWKFSAE  209 (355)
T ss_dssp             EECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTEEEEEETTTE--EEEEECS
T ss_pred             EECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCCeEEEecccce--EEEEeCC
Confidence            44567889999883   221   12333432  245788888998889999888855  5667743

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=93.23  E-value=2.1  Score=35.50  Aligned_cols=59  Identities=17%  Similarity=0.305  Sum_probs=39.8

Q ss_pred             EeecCCeEEEEECCCCccceeEecCC--------CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCc
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSP--------LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQS   65 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~--------~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~   65 (147)
                      +|+.++-|..||.++++  +..+...        ....|.+++..++|+.|.+|+.++-+.+  +|..+++
T Consensus       372 iGt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~--~d~~~~~  438 (795)
T 4a2l_A          372 IGTNDGGLNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSI--LHRNSGQ  438 (795)
T ss_dssp             EEESSSCEEEECTTTCC--EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEE--EETTTCC
T ss_pred             EEECCCCeEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeE--EeCCCCc
Confidence            56777789999988763  2232211        1235899998888885777787677777  7776543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=92.35  E-value=1.2  Score=32.42  Aligned_cols=37  Identities=5%  Similarity=-0.094  Sum_probs=27.4

Q ss_pred             cceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092           31 YQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSKNFTF   70 (147)
Q Consensus        31 ~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~~~~~   70 (147)
                      ..+..|+++|+++ .+++...++.|..  +|+. ++.+.++
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~--ld~~-g~v~~~i   64 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVE--MTTN-GDLIRTI   64 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEE--EETT-CCEEEEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEE--EeCC-CCEEEEE
Confidence            3589999999865 5566777888877  8886 6666555

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=92.07  E-value=0.64  Score=36.15  Aligned_cols=71  Identities=13%  Similarity=0.057  Sum_probs=43.4

Q ss_pred             eEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092           33 MRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS  111 (147)
Q Consensus        33 i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (147)
                      ...++++| +|..+++-..+++|..  +|...+... .+......   ..++.+                          
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~--~~~~~~~~~-~~~~~~~~---~~P~gi--------------------------  275 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFR--YDFTTQETT-PLFTIQDS---GWEFHI--------------------------  275 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEE--EETTTTEEE-EEEECSSS---SCCEEE--------------------------
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEE--EECCCCcEE-EEEEcCCC---CcceeE--------------------------
Confidence            46789999 6777777667788887  666533221 11111000   012233                          


Q ss_pred             eEEEEEecCCC-eEEEeCCCCcEEEeecC
Q 032092          112 HVIVLFVQIHH-TFATAGSDGAFNFWDKD  139 (147)
Q Consensus       112 ~~~~~fspdg~-~latg~~Dg~i~iWd~~  139 (147)
                          +|+|+|+ ++++-...+.|..++.+
T Consensus       276 ----a~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          276 ----QFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             ----EECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ----EEcCCCCEEEEEECCCCEEEEEeCC
Confidence                9999998 55665667889987754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.65  E-value=0.27  Score=35.59  Aligned_cols=28  Identities=7%  Similarity=0.090  Sum_probs=22.2

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~   63 (147)
                      .++.++|+|||..+++  .+|.+.-  .++.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~--~~~~t   69 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYK--GTPPT   69 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEE--ESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEE--ECCCC
Confidence            5789999999998888  7787654  77644

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=90.93  E-value=3.4  Score=29.95  Aligned_cols=57  Identities=11%  Similarity=0.022  Sum_probs=35.6

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~   61 (147)
                      +...++.|...|.. ++. ..++.-......-.|++.+++.++++.-.++.+.++.++.
T Consensus        44 V~d~~~~I~~ld~~-g~v-~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           44 TINKPAAIVEMTTN-GDL-IRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             EEETTEEEEEEETT-CCE-EEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             EECCCCeEEEEeCC-CCE-EEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            44567788888887 542 3333211112467889988887666655677888844443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=90.72  E-value=3.8  Score=30.82  Aligned_cols=47  Identities=11%  Similarity=0.137  Sum_probs=24.7

Q ss_pred             eEeecCCeEEEEECCCCccceeEec--CCCCcceEEEEEccC---CCEEEEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRIN--SPLKYQMRCVAAFPD---QQGFWVGS   49 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~--~~~~~~i~~la~spd---g~~l~~g~   49 (147)
                      .++..+|.|+++| ..++.++..+.  .........|+++|+   +..|.++.
T Consensus        43 ~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           43 LVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             EEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             EEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            3445568888887 33432222111  111234789999997   44444433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=90.70  E-value=2.1  Score=34.31  Aligned_cols=32  Identities=6%  Similarity=-0.093  Sum_probs=23.8

Q ss_pred             ceEEEEEccCCCE-EEEEeeCCeEEEEeecCCC
Q 032092           32 QMRCVAAFPDQQG-FWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus        32 ~i~~la~spdg~~-l~~g~~dg~i~i~~~d~~~   63 (147)
                      ..+.|+|+|+|+. +++=+..++|+.+++|...
T Consensus       311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~  343 (496)
T 3kya_A          311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK  343 (496)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc
Confidence            3578999999995 5555667889886666544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=89.85  E-value=6.5  Score=31.43  Aligned_cols=24  Identities=13%  Similarity=-0.004  Sum_probs=19.9

Q ss_pred             EEecC-CCeEEEeCCCCcEEEeecC
Q 032092          116 LFVQI-HHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus       116 ~fspd-g~~latg~~Dg~i~iWd~~  139 (147)
                      +.+|+ +.++++-..++.|..+|.+
T Consensus       253 avdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          253 TIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EECTTTCCEEEEETTTTEEEEECHH
T ss_pred             EEcCCCCeEEEEECCCCEEEEEecc
Confidence            89995 5667777788899999987

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.80  E-value=1.4  Score=37.92  Aligned_cols=34  Identities=12%  Similarity=0.228  Sum_probs=29.7

Q ss_pred             EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092          113 VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       113 ~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +.++..++..++.|=+.|+++|+|++.+++++.+
T Consensus       239 ~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          239 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             EEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             EEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            3457778888999999999999999999999875

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=89.25  E-value=4.1  Score=33.69  Aligned_cols=57  Identities=21%  Similarity=0.279  Sum_probs=34.6

Q ss_pred             EeecCCeEEEEECCCCccceeEecC--CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCc
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINS--PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQS   65 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~--~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~   65 (147)
                      +|+.++-+..||.++++  ++.+..  .....|.++...++|+. .+|+.. -+.+  +|..+++
T Consensus       422 igt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~~-Gl~~--~~~~~~~  480 (781)
T 3v9f_A          422 FGTYLGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNKKI-WIGTHA-GVFV--IDLASKK  480 (781)
T ss_dssp             EEETTEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECTTSEE-EEEETT-EEEE--EESSSSS
T ss_pred             EEeccCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCCCE-EEEECC-ceEE--EeCCCCe
Confidence            45666778889987763  233321  12245899988887764 445554 4656  6776543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=88.90  E-value=6.6  Score=32.55  Aligned_cols=57  Identities=11%  Similarity=0.163  Sum_probs=35.9

Q ss_pred             eEeecCCeEEEEECCCCccceeEecC----CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINS----PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ   64 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~----~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~   64 (147)
                      -+|+.++-|.+||.++++  +..+..    .....|.++...++|+..+. +.+| +.+  +|..++
T Consensus       421 Wigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~G-l~~--~~~~~~  481 (795)
T 4a2l_A          421 YIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPDGEGNLWLG-TLSA-LVR--FNPEQR  481 (795)
T ss_dssp             EEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESSC-EEE--EETTTT
T ss_pred             EEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecCc-eeE--EeCCCC
Confidence            456777789999998864  233321    11235899998888875544 4455 555  677544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=88.48  E-value=5.8  Score=29.05  Aligned_cols=52  Identities=6%  Similarity=-0.079  Sum_probs=27.7

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-C-CeEEEEeecC
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-E-GRVGVHHLDD   61 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-d-g~i~i~~~d~   61 (147)
                      ..+.|.++|+..... ...+.... ...+.|++.|++..+..... . +.|..  ++.
T Consensus        97 ~~~~I~~~~~~g~~~-~~~~~~~~-~~P~~iavdp~~g~ly~~d~~~~~~I~~--~~~  150 (316)
T 1ijq_A           97 VLGTVSVADTKGVKR-KTLFRENG-SKPRAIVVDPVHGFMYWTDWGTPAKIKK--GGL  150 (316)
T ss_dssp             TTTEEEEEETTSSSE-EEEEECTT-CCEEEEEEETTTTEEEEEECSSSCEEEE--EET
T ss_pred             CCCEEEEEeCCCCce-EEEEECCC-CCcceEEeCCCCCEEEEEccCCCCeEEE--EcC
Confidence            345666677654321 11122122 24689999996655444443 3 67776  554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=88.28  E-value=6.5  Score=29.35  Aligned_cols=49  Identities=18%  Similarity=0.257  Sum_probs=26.9

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCE-EEEEeeC-CeEEE
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQG-FWVGSIE-GRVGV   56 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~-l~~g~~d-g~i~i   56 (147)
                      ..+.|.+.++..... ........ ...+.|++.|++.. +.+-... +.|..
T Consensus       136 ~~~~I~~~~~dG~~~-~~l~~~~l-~~P~~iavdp~~g~ly~td~~~~~~I~r  186 (349)
T 3v64_C          136 GTSRIEVANLDGAHR-KVLLWQSL-EKPRAIALHPMEGTIYWTDWGNTPRIEA  186 (349)
T ss_dssp             TTTEEEEEETTSCSC-EEEECTTC-SCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CCCeEEEEcCCCCce-EEEEeCCC-CCcceEEEecCcCeEEEeccCCCCEEEE
Confidence            345677777664322 11122122 24689999996554 4444444 67776

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=87.85  E-value=7  Score=29.24  Aligned_cols=47  Identities=6%  Similarity=0.144  Sum_probs=24.8

Q ss_pred             eEeecCCeEEEEECCCCcc-ceeEec--CCCCcceEEEEEccC---CCEEEEEee
Q 032092            2 VVGTADRNLVVFNLQNPQT-EFKRIN--SPLKYQMRCVAAFPD---QQGFWVGSI   50 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~-~~~~~~--~~~~~~i~~la~spd---g~~l~~g~~   50 (147)
                      .++..+|.|++++  .++. ++..+.  .........|+++||   +..|.++..
T Consensus        45 ~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           45 LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence            3445568888888  3321 111111  011234789999998   445444433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=87.77  E-value=3.2  Score=34.40  Aligned_cols=52  Identities=8%  Similarity=-0.042  Sum_probs=27.3

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe-eC-CeEEEEeecC
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS-IE-GRVGVHHLDD   61 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~-~d-g~i~i~~~d~   61 (147)
                      ..+.|.++|+.....  ..+........+.|++.|++..|.... .. ++|..  +++
T Consensus       473 ~~~~I~v~d~dg~~~--~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~--~~~  526 (699)
T 1n7d_A          473 VLGTVSVADTKGVKR--KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKK--GGL  526 (699)
T ss_dssp             TTSCEEEEBSSSCCE--EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEB--CCS
T ss_pred             cCCeEEEEecCCCce--EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEE--EeC
Confidence            346677777765421  222111112357889999755444333 22 67766  554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=87.74  E-value=2.2  Score=33.82  Aligned_cols=31  Identities=10%  Similarity=0.110  Sum_probs=25.8

Q ss_pred             cceEEEEEccC---CCEEEEEeeCCeEEEEeecC
Q 032092           31 YQMRCVAAFPD---QQGFWVGSIEGRVGVHHLDD   61 (147)
Q Consensus        31 ~~i~~la~spd---g~~l~~g~~dg~i~i~~~d~   61 (147)
                      .+|..+-|+|-   +..|++=..|++|++|+++.
T Consensus       125 s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          125 SSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             CceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            46999999995   56899999999999955544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.67  E-value=9.7  Score=33.64  Aligned_cols=52  Identities=17%  Similarity=0.198  Sum_probs=30.8

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEE---EccC-CCEEEEEe----------eCCeEEEEeec
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVA---AFPD-QQGFWVGS----------IEGRVGVHHLD   60 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la---~spd-g~~l~~g~----------~dg~i~i~~~d   60 (147)
                      +.|++.|-.+.+. ...++-.....+.|++   |..+ ..+|++|+          ..|.|.++.++
T Consensus       807 s~i~lidp~t~~~-i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~  872 (1158)
T 3ei3_A          807 HNLLIIDQHTFEV-LHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS  872 (1158)
T ss_dssp             EEEEEEETTTCCE-EEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred             EEEEEEeCCCCeE-EEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence            4689999888753 3444322233455555   3333 46899887          34677774443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=86.03  E-value=10  Score=31.37  Aligned_cols=56  Identities=18%  Similarity=0.192  Sum_probs=32.6

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCC-----CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPL-----KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ   64 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~-----~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~   64 (147)
                      .|+. +-+..||..+++.  ..+....     ...|.+|+..++|+..+.....| +..  +|..++
T Consensus       465 igt~-~Gl~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~--~~~~~~  525 (781)
T 3v9f_A          465 IGTH-AGVFVIDLASKKV--IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGI--YTPDMQ  525 (781)
T ss_dssp             EEET-TEEEEEESSSSSC--CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEE--ECTTCC
T ss_pred             EEEC-CceEEEeCCCCeE--EecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEE--EeCCCC
Confidence            3454 5688899887642  2221111     23589999988887554433355 545  677543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=85.47  E-value=10  Score=28.71  Aligned_cols=28  Identities=14%  Similarity=0.144  Sum_probs=17.9

Q ss_pred             ceEEEEEccCCCEEEEEe-eC-CeEEEEeecC
Q 032092           32 QMRCVAAFPDQQGFWVGS-IE-GRVGVHHLDD   61 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~-~d-g~i~i~~~d~   61 (147)
                      ..+.|++.|++..|.... .. +.|..  ++.
T Consensus       203 ~P~giavdp~~g~ly~td~~~~~~I~r--~~~  232 (386)
T 3v65_B          203 KPRAIALHPMEGTIYWTDWGNTPRIEA--SSM  232 (386)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEE--EET
T ss_pred             CCcEEEEEcCCCeEEEeccCCCCEEEE--EeC
Confidence            468999999765544443 34 66766  554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.94  E-value=1  Score=39.49  Aligned_cols=32  Identities=13%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             EEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092          115 VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       115 ~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ++..++.+++.|=+.|+++||||+.+++++.+
T Consensus       243 ~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t  274 (1139)
T 4fhn_B          243 MIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  274 (1139)
T ss_dssp             CEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred             eeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence            36778889999999999999999999999876

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=84.92  E-value=2.9  Score=31.39  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=20.2

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeec
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLD   60 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d   60 (147)
                      ....|+|.|||+.+++ ..+|+|.+  ++
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~--i~   57 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRL--FR   57 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEE--EE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEE--EE
Confidence            3579999999985554 66799988  65

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=84.63  E-value=10  Score=28.00  Aligned_cols=54  Identities=13%  Similarity=0.115  Sum_probs=31.6

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCC
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~   62 (147)
                      ....|+..|+.............. .....|+|.+. +..+.+-...+.|..  ++..
T Consensus        11 ~~~~I~~i~l~~~~~~~~~~~~~~-~~~~~ld~d~~~~~lyw~D~~~~~I~r--~~~~   65 (318)
T 3sov_A           11 NRRDLRLVDATNGKENATIVVGGL-EDAAAVDFVFSHGLIYWSDVSEEAIKR--TEFN   65 (318)
T ss_dssp             CEEEEEEEETTCTTSCCEEEEEEE-EEEEEEEEEGGGTEEEEEETTTTEEEE--EETT
T ss_pred             ccCeEEEEECCCCceEEEEEecCC-CccEEEEEEeCCCEEEEEECCCCcEEE--EEcc
Confidence            356799999987631111111111 23568899986 445556556778877  5554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=82.15  E-value=12  Score=27.51  Aligned_cols=23  Identities=13%  Similarity=0.088  Sum_probs=17.1

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEE
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVG   55 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~   55 (147)
                      .+.++++.|+++.+++|. +|.+.
T Consensus       251 ~~~~v~~~~~~~~~~~g~-~g~i~  273 (327)
T 2xbg_A          251 GFLDLAYRTPNEVWLAGG-AGALL  273 (327)
T ss_dssp             CEEEEEESSSSCEEEEES-TTCEE
T ss_pred             ceEEEEecCCCEEEEEeC-CCeEE
Confidence            478899998887777655 67764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=81.77  E-value=13  Score=27.31  Aligned_cols=52  Identities=15%  Similarity=0.031  Sum_probs=28.3

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee--CCeEEEEeecC
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI--EGRVGVHHLDD   61 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~--dg~i~i~~~d~   61 (147)
                      ..+.|.++|+..... ........ ...+.|++.|.+..+.....  .+.|..  ++.
T Consensus        99 ~~~~I~~~~~dG~~~-~~l~~~~~-~~P~giavdp~~g~ly~td~~~~~~I~r--~~~  152 (318)
T 3sov_A           99 ETNRIEVSNLDGSLR-KVLFWQEL-DQPRAIALDPSSGFMYWTDWGEVPKIER--AGM  152 (318)
T ss_dssp             TTTEEEEEETTSCSC-EEEECSSC-SSEEEEEEEGGGTEEEEEECSSSCEEEE--EET
T ss_pred             CCCEEEEEECCCCcE-EEEEeCCC-CCccEEEEeCCCCEEEEEecCCCCEEEE--EEc
Confidence            345677777654321 11121222 24689999997555554442  467776  554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=81.73  E-value=14  Score=27.48  Aligned_cols=28  Identities=18%  Similarity=0.122  Sum_probs=18.8

Q ss_pred             eEEEEEccCC-CEEEEEeeCCeEEEEeecCC
Q 032092           33 MRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus        33 i~~la~spdg-~~l~~g~~dg~i~i~~~d~~   62 (147)
                      ...|++.|.+ +.+.+-...+.|.+  ++..
T Consensus       118 p~glavd~~~g~ly~~d~~~~~I~~--~~~d  146 (349)
T 3v64_C          118 PGGLAVDWVHDKLYWTDSGTSRIEV--ANLD  146 (349)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEE--EETT
T ss_pred             ccEEEEecCCCeEEEEcCCCCeEEE--EcCC
Confidence            4678998864 45556566778887  5543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=81.29  E-value=9.2  Score=31.65  Aligned_cols=28  Identities=14%  Similarity=0.108  Sum_probs=19.4

Q ss_pred             eEEEEEccCCC-EEEEEeeCCeEEEEeecCC
Q 032092           33 MRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus        33 i~~la~spdg~-~l~~g~~dg~i~i~~~d~~   62 (147)
                      .+.|+++|+++ .+++-+..++|..  +|..
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~--~d~d  570 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISS--IDVN  570 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEE--ECSS
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEE--EccC
Confidence            57899999855 4555556678887  5553

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=81.09  E-value=5.6  Score=32.58  Aligned_cols=16  Identities=0%  Similarity=-0.176  Sum_probs=11.9

Q ss_pred             EEEEEccCCCEEEEEe
Q 032092           34 RCVAAFPDQQGFWVGS   49 (147)
Q Consensus        34 ~~la~spdg~~l~~g~   49 (147)
                      --|+|+|+|++++.-+
T Consensus       479 DNL~fd~~G~LwI~eD  494 (592)
T 3zwu_A          479 DGLGFDKAGRLWILTD  494 (592)
T ss_dssp             EEEEECTTCCEEEEEC
T ss_pred             cceEECCCCCEEEEec
Confidence            4599999998666544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=80.65  E-value=17  Score=27.77  Aligned_cols=53  Identities=9%  Similarity=0.161  Sum_probs=31.1

Q ss_pred             CCeEEEEECCCCccceeEecC---C--CC-cceEEEEE--ccC-CC-EEEEEeeCCeEEEEee
Q 032092            7 DRNLVVFNLQNPQTEFKRINS---P--LK-YQMRCVAA--FPD-QQ-GFWVGSIEGRVGVHHL   59 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~---~--~~-~~i~~la~--spd-g~-~l~~g~~dg~i~i~~~   59 (147)
                      +++|++|++.....++..+..   +  .. ..+.-+|+  +|. ++ ++.+...+|.+..|.+
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l  160 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYEL  160 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEE
Confidence            579999987422122333321   1  11 23556777  775 54 5667788899887444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=80.22  E-value=2.4  Score=32.23  Aligned_cols=29  Identities=10%  Similarity=0.180  Sum_probs=23.4

Q ss_pred             CCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092           42 QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus        42 g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      +..+++++.||.|.-  +|..+|+...+++.
T Consensus        10 ~~~V~v~t~dG~l~A--ld~~tG~~~W~~~~   38 (339)
T 2be1_A           10 SDILIAADVEGGLHA--VDRRNGHIIWSIEP   38 (339)
T ss_dssp             EEEEEEEETTSCEEE--EETTTTEEEEEECG
T ss_pred             CCEEEEEeCCCeEEE--EECCCCcEEEEecC
Confidence            357888899999877  88888888888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 2e-04
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 32/153 (20%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRIN--SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHH 58
           ++VG  +  +  F L   + +   I                 +Q+G+   SI+GRV V  
Sbjct: 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

Query: 59  LDDS----QQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVI 114
            DD       SK F F+CHR   +  ++    + +                         
Sbjct: 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE------------------------ 258

Query: 115 VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147
             F   H    TAGSDG  + W+  +++++K F
Sbjct: 259 --FSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 9/144 (6%)

Query: 1   MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
            V G  D +  +++++      ++  +  +  +  +  FP+   F  GS +    +  L 
Sbjct: 199 FVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

Query: 61  DSQQSKNFTFKCHRDGSETCSVISFTSILA-GDAPKYSSFYKV---KRLHLFVKSHVIVL 116
             Q+   ++      G  + S      +L  G      + +      R  +       V 
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316

Query: 117 FVQIHH---TFATAGSDGAFNFWD 137
            + +       AT   D     W+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.88
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.84
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.84
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.83
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.83
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.83
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.83
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.8
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.8
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.79
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.78
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.78
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.77
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.74
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.74
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.74
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.72
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.72
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.71
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.71
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.71
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.68
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.68
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.67
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.67
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.66
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.65
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.65
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.62
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.62
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.57
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.54
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.5
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.48
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.46
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.45
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.3
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.28
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.25
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.21
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.18
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.14
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.0
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.94
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.91
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.78
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.57
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.91
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.76
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.6
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.57
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.41
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.41
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.38
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.37
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.24
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.17
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.65
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.6
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.52
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.49
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.45
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.41
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.4
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.39
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.23
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.84
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.81
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.49
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.42
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.81
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	94.64
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	94.0
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	93.44
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.88
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.56
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.2
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.94
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	91.82
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.79
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.03
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	87.33
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	86.23

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=9.4e-23  Score=155.65  Aligned_cols=118  Identities=15%  Similarity=0.243  Sum_probs=87.2

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec-----CCCCcceEEEEEccCCCEEEEEeeCCe---EEEEeecCCCCcceeEEEe
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN-----SPLKYQMRCVAAFPDQQGFWVGSIEGR---VGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~-----~~~~~~i~~la~spdg~~l~~g~~dg~---i~i~~~d~~~~~~~~~~~~   72 (147)
                      ||+|+.||+|+|||+++++. ...+.     ..|..+|++|+|+|||++|++|+.|++   |++  ||+.+++.+.++..
T Consensus       198 lasgs~Dg~i~iwd~~~~~~-~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~l--wd~~~g~~~~~l~~  274 (393)
T d1sq9a_         198 IATGFNNGTVQISELSTLRP-LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL--YETEFGERIGSLSV  274 (393)
T ss_dssp             EEEECTTSEEEEEETTTTEE-EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE--EETTTCCEEEEECB
T ss_pred             EEEEeCCCcEEEEeeccccc-ccccccccccccccceEEEcccccccceeeeecCCCCcceeee--cccccceeeeeecc
Confidence            57899999999999998853 33222     135568999999999999999999975   888  78877777766643


Q ss_pred             ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ....     .                     +....+.||    .+++|+||+++|+|||.|++|+|||++++++++++
T Consensus       275 ~~~~-----~---------------------~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         275 PTHS-----S---------------------QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             C----------------------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             cccc-----c---------------------cceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEE
Confidence            2110     0                     000111222    34599999999999999999999999999998763

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2e-20  Score=141.56  Aligned_cols=140  Identities=9%  Similarity=0.026  Sum_probs=96.5

Q ss_pred             CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce-
Q 032092            1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE-   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~-   78 (147)
                      ||+|+.||.|+|||+.+++. ....+ ..|+.+|++|+|+|++++|++|+.|++|+||+++..+.+....+.+|..... 
T Consensus        22 la~~~~~~~i~iw~~~~~~~~~~~~l-~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~  100 (371)
T d1k8kc_          22 IAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC  100 (371)
T ss_dssp             EEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEE
T ss_pred             EEEEeCCCEEEEEECCCCCEEEEEEe-cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccc
Confidence            57899999999999987642 22233 2567789999999999999999999999996665433333444455554322 


Q ss_pred             -EEeeccceeeeecCCCcceeeeeee-----eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092           79 -TCSVISFTSILAGDAPKYSSFYKVK-----RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSK  141 (147)
Q Consensus        79 -~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~  141 (147)
                       .+..+...+++++.+..++++....     .......+|    ..++|+|++++||+|+.|+.|++||...+
T Consensus       101 i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         101 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             EEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             cccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccC
Confidence             3444444455555555555543211     112223333    57899999999999999999999998654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=8.7e-21  Score=138.92  Aligned_cols=99  Identities=15%  Similarity=0.196  Sum_probs=84.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec-CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      |++|+.||.|++||++..+. ..... ..+..++.+++|+|++++|++|+.||.|++  ||..+++.+.++.+|..    
T Consensus       241 l~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~i--wd~~~~~~~~~~~~H~~----  313 (340)
T d1tbga_         241 FATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV--WDALKADRAGVLAGHDN----  313 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEE--EETTTCCEEEEECCCSS----
T ss_pred             EEEEeCCCeEEEEeeccccc-ccccccccccCceEEEEECCCCCEEEEEECCCEEEE--EECCCCcEEEEEcCCCC----
Confidence            57899999999999998754 33332 233456999999999999999999999999  78888899999999875    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd  137 (147)
                       +|.++                              +|+|++++||||+.||.|+|||
T Consensus       314 -~V~~l------------------------------~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         314 -RVSCL------------------------------GVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -CEEEE------------------------------EECTTSSCEEEEETTSCEEEEC
T ss_pred             -CEEEE------------------------------EEeCCCCEEEEEccCCEEEEeC
Confidence             46666                              9999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.7e-20  Score=135.21  Aligned_cols=98  Identities=14%  Similarity=0.183  Sum_probs=85.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++|+.||.|++||+++++ ++..+. .+..+|++++++|++++|++|+.||+|+|  ||..+++.+.++.+|..     
T Consensus       220 ~~~~~~d~~i~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~h~~-----  290 (317)
T d1vyhc1         220 LLSGSRDKTIKMWDVSTGM-CLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRV--WDYKNKRCMKTLNAHEH-----  290 (317)
T ss_dssp             EEEEETTSEEEEEETTTTE-EEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEE--ECCTTSCCCEEEECCSS-----
T ss_pred             eEeccCCCEEEEEECCCCc-EEEEEe-CCCCCEEEEEECCCCCEEEEEECCCeEEE--EECCCCcEEEEEcCCCC-----
Confidence            4678999999999999985 445554 35568999999999999999999999999  78888889999999875     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd  137 (147)
                      ++.++                              +|+|++++||||+.||+|+|||
T Consensus       291 ~V~~~------------------------------~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         291 FVTSL------------------------------DFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEE------------------------------EECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEE------------------------------EEcCCCCEEEEEeCCCeEEEeC
Confidence            46666                              9999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.83  E-value=1.3e-20  Score=140.39  Aligned_cols=113  Identities=15%  Similarity=0.191  Sum_probs=87.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC--ce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG--SE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~--~~   78 (147)
                      |++|+.||.|++||+++++. ...+ ..+..+|++++++|++++|++|+.||.|++  ||.++++....+......  ++
T Consensus       162 l~sgs~d~~i~i~d~~~~~~-~~~~-~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~--~d~~~~~~~~~~~~~~~~~~~h  237 (311)
T d1nr0a1         162 IISGSDDNTVAIFEGPPFKF-KSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVL--YNGVDGTKTGVFEDDSLKNVAH  237 (311)
T ss_dssp             EEEEETTSCEEEEETTTBEE-EEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTCCEEEECBCTTSSSCSS
T ss_pred             eccccccccccccccccccc-cccc-ccccccccccccCccccccccccccccccc--cccccccccccccccccccccc
Confidence            47899999999999999753 3333 345678999999999999999999999999  676666665555422110  11


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ...+.++                              +|+|++++|+||+.||+|+|||++++++++++
T Consensus       238 ~~~V~~~------------------------------~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         238 SGSVFGL------------------------------TWSPDGTKIASASADKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             SSCEEEE------------------------------EECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccccccc------------------------------ccCCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            1124444                              99999999999999999999999999988753

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.8e-19  Score=134.30  Aligned_cols=145  Identities=13%  Similarity=0.149  Sum_probs=98.7

Q ss_pred             CeEeecCCeEEEEECCCCcc--ceeEe-cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQT--EFKRI-NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~--~~~~~-~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~   77 (147)
                      ||+|+ ||.|+|||+.+++.  +.... ...+..+|++++|+|||++|++|+.||+|++|+++..+.+....+.+|....
T Consensus        66 latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  144 (337)
T d1gxra_          66 VYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             EEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccc
Confidence            57776 89999999987643  22222 2245567999999999999999999999999655444455556677776543


Q ss_pred             e--EEeeccceeeeecCCCcceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           78 E--TCSVISFTSILAGDAPKYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        78 ~--~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .  .+..+...+++++.+..+..+... .+......+|    ..++|+|+++.+++|+.|+.|++||+++++.+++
T Consensus       145 ~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~  220 (337)
T d1gxra_         145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecc
Confidence            2  233333333444555555444311 1222333333    5789999999999999999999999999988764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.83  E-value=1.2e-19  Score=134.98  Aligned_cols=144  Identities=13%  Similarity=0.125  Sum_probs=102.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee--CCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI--EGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~--dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      ||+|+.||+|+|||+++++.........+..+|.+++|+|++++|++++.  +..++||+++  +++...++.+|.....
T Consensus        73 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~--~~~~~~~l~~h~~~v~  150 (311)
T d1nr0a1          73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMN  150 (311)
T ss_dssp             EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEE
T ss_pred             EeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccc--cccccccccccccccc
Confidence            58999999999999998765433222345668999999999999998876  4568895554  4567777888876432


Q ss_pred             --EEeeccceeeeecCCCc-ceeeeeee--eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           79 --TCSVISFTSILAGDAPK-YSSFYKVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        79 --~~~v~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                        .+..+.-.++++|++++ +.++. ++  +......+|    ..++|+|++++|++|+.|+.|++||..+++.+.+|
T Consensus       151 ~v~~~~~~~~~l~sgs~d~~i~i~d-~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~  227 (311)
T d1nr0a1         151 SVDFKPSRPFRIISGSDDNTVAIFE-GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF  227 (311)
T ss_dssp             EEEECSSSSCEEEEEETTSCEEEEE-TTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             cccccccceeeeccccccccccccc-ccccccccccccccccccccccCccccccccccccccccccccccccccccc
Confidence              23333333455555554 44433 32  233344444    57999999999999999999999999988776553

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=6.9e-20  Score=137.36  Aligned_cols=108  Identities=20%  Similarity=0.223  Sum_probs=81.0

Q ss_pred             CeEeecCCeEEEEECCCCcccee----------EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFK----------RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF   70 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~----------~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~   70 (147)
                      |++|+.||.|++||+++++....          .....+...|.+++|+|++++|++|+.||+|++  ||.++++.+.++
T Consensus       269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~v--wd~~~~~~~~~l  346 (388)
T d1erja_         269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF--WDKKSGNPLLML  346 (388)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE--EETTTCCEEEEE
T ss_pred             EEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEE--EECCCCcEEEEE
Confidence            57899999999999987643110          011124457999999999999999999999999  788889999999


Q ss_pred             EeccCCceEEe-eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           71 KCHRDGSETCS-VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        71 ~~h~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      ++|........ ....                              +|+|++++||||+.||+|+|||+++
T Consensus       347 ~~H~~~V~~~~~~~~~------------------------------~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         347 QGHRNSVISVAVANGS------------------------------SLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             ECCSSCEEEEEECSSC------------------------------TTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             eCCCCCEEEEEEecCc------------------------------ccCCCCCEEEEEeCCCEEEEEeeee
Confidence            99986422111 1222                              7899999999999999999999853

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1.4e-18  Score=131.31  Aligned_cols=146  Identities=19%  Similarity=0.104  Sum_probs=96.9

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCccee--EEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF--TFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~--~~~~h~~~~~   78 (147)
                      |++|+.|++|+|||+++++.........+..+|.+++|+|+++.|++|+.|+++++|+++..+.....  ....|+....
T Consensus        66 l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccc
Confidence            58899999999999987642111112234567999999999999999999999999877765432221  1223443322


Q ss_pred             --EEeeccceeeeecCCCcceeeeeee-------------------eeeeeeece----EEEEEecCCCeEEEeCCCCcE
Q 032092           79 --TCSVISFTSILAGDAPKYSSFYKVK-------------------RLHLFVKSH----VIVLFVQIHHTFATAGSDGAF  133 (147)
Q Consensus        79 --~~~v~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~----~~~~fspdg~~latg~~Dg~i  133 (147)
                        .+..+...+++++.|..++++....                   .......+|    ..++|+|+|++||+|+.|+.|
T Consensus       146 ~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i  225 (371)
T d1k8kc_         146 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV  225 (371)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred             cccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcc
Confidence              2333343334445555555443110                   011222333    578999999999999999999


Q ss_pred             EEeecCCceeeec
Q 032092          134 NFWDKDSKQRLKV  146 (147)
Q Consensus       134 ~iWd~~~~~~~~~  146 (147)
                      ++||+++++.+.+
T Consensus       226 ~iwd~~~~~~~~~  238 (371)
T d1k8kc_         226 CLADADKKMAVAT  238 (371)
T ss_dssp             EEEEGGGTTEEEE
T ss_pred             eEEeeecccceee
Confidence            9999998887754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=5.5e-19  Score=129.18  Aligned_cols=110  Identities=17%  Similarity=0.286  Sum_probs=86.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++|+.|+.|++||+++++ +...+. .+..+|++++|+|++++|++|+.||.|++  ||.+.......+......   .
T Consensus       199 ~~~~~~d~~v~i~d~~~~~-~~~~~~-~h~~~i~~v~~~p~~~~l~s~s~d~~i~~--~~~~~~~~~~~~~~~~~~---~  271 (340)
T d1tbga_         199 FVSGACDASAKLWDVREGM-CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRL--FDLRADQELMTYSHDNII---C  271 (340)
T ss_dssp             EEEEETTTEEEEEETTTTE-EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTTEEEEEECCTTCC---S
T ss_pred             eEEeecCceEEEEECCCCc-EEEEEe-CCCCCeEEEEECCCCCEEEEEeCCCeEEE--Eeeccccccccccccccc---C
Confidence            3688999999999999985 344454 45678999999999999999999999999  666655555444322211   1


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ++.++                              +|+|++++|++|+.||.|++||+.++++++++
T Consensus       272 ~i~~~------------------------------~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  308 (340)
T d1tbga_         272 GITSV------------------------------SFSKSGRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             CEEEE------------------------------EECSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ceEEE------------------------------EECCCCCEEEEEECCCEEEEEECCCCcEEEEE
Confidence            23444                              99999999999999999999999999887653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=8.7e-19  Score=130.55  Aligned_cols=109  Identities=15%  Similarity=0.164  Sum_probs=87.0

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC--CCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS--PLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~--~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~   77 (147)
                      +++|+.||.|++||++..+.. .....  .+...|.+++|+|| +++|++|+.||.|++  ||.++++.+.++.+|..  
T Consensus       175 ~~~~~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~i--wd~~~~~~~~~l~~~~~--  249 (325)
T d1pgua1         175 SMTVGDDGSVVFYQGPPFKFS-ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC--FDGKSGEFLKYIEDDQE--  249 (325)
T ss_dssp             EEEEETTTEEEEEETTTBEEE-EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE--EETTTCCEEEECCBTTB--
T ss_pred             EEEeecccccccccccccccc-eecccccCCCCccEEeeeccccceeccccccccceee--eeecccccccccccccc--
Confidence            367899999999999887542 22222  34456999999997 688999999999999  78888888888887764  


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEe---cCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFV---QIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs---pdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                         ++...                              .|+   |||++|++|+.|+.|+|||+++++++++|
T Consensus       250 ---~v~~~------------------------------~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         250 ---PVQGG------------------------------IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             ---CCCSC------------------------------EEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ---ccccc------------------------------eeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence               34444                              444   78999999999999999999999988753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=4.3e-18  Score=122.34  Aligned_cols=143  Identities=17%  Similarity=0.155  Sum_probs=100.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET-   79 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~-   79 (147)
                      +++++.|+.+++||+++++. ...+. .+...+.+++|+|++++|++|+.||.|++  |+.++++....+.+|...... 
T Consensus       116 ~~~~~~d~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~~--~~~~~~~~~~~~~~~~~~i~~~  191 (317)
T d1vyhc1         116 IVSASRDKTIKMWEVQTGYC-VKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRV--WVVATKECKAELREHRHVVECI  191 (317)
T ss_dssp             EEEEETTSEEEEEETTTCCE-EEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTCCEEEEECCCSSCEEEE
T ss_pred             EEeeccCcceeEeeccccee-eeEEc-cCCCcceeeecccCCCEEEEEeCCCeEEE--EeeccceeeEEEecCCCCceEE
Confidence            47889999999999999864 34443 34557899999999999999999999999  777777777777766543111 


Q ss_pred             -Eeec-------------------cceeeeecCCC-cceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcE
Q 032092           80 -CSVI-------------------SFTSILAGDAP-KYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAF  133 (147)
Q Consensus        80 -~~v~-------------------~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i  133 (147)
                       +...                   .-..+.+|+.+ .+..+... .+....+.+|    ..++|+|++++|++|+.||.|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  271 (317)
T d1vyhc1         192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL  271 (317)
T ss_dssp             EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred             EEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeE
Confidence             1000                   00123333334 34333311 1333445555    568999999999999999999


Q ss_pred             EEeecCCceeeecC
Q 032092          134 NFWDKDSKQRLKVF  147 (147)
Q Consensus       134 ~iWd~~~~~~~~~~  147 (147)
                      +|||+++++++++|
T Consensus       272 ~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         272 RVWDYKNKRCMKTL  285 (317)
T ss_dssp             EEECCTTSCCCEEE
T ss_pred             EEEECCCCcEEEEE
Confidence            99999999887653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.7e-18  Score=125.34  Aligned_cols=141  Identities=13%  Similarity=0.159  Sum_probs=100.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~   78 (147)
                      |++++.|+.|++||+++++. .... ..+..++.+++|+|+++.+++|+.||.+++  ||.++++.+..+. |....  .
T Consensus       156 l~s~~~d~~i~~~~~~~~~~-~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i--~d~~~~~~~~~~~-~~~~i~~l  230 (337)
T d1gxra_         156 CFSCCSDGNIAVWDLHNQTL-VRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRS--WDLREGRQLQQHD-FTSQIFSL  230 (337)
T ss_dssp             EEEEETTSCEEEEETTTTEE-EEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEE--EETTTTEEEEEEE-CSSCEEEE
T ss_pred             cccccccccccccccccccc-cccc-cccccccccccccccccccccccccccccc--cccccceeecccc-cccceEEE
Confidence            47889999999999999853 2333 345568999999999999999999999999  7777777665553 44332  2


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeee----eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFV----KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .+..+...+++++.+..+.++..-.......    .....++|+|+|++|++|+.||.|++||+.+++++.+
T Consensus       231 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~  302 (337)
T d1gxra_         231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            2333343344445555555444211111222    3346799999999999999999999999999888764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=2.9e-18  Score=124.72  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=79.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcce---eEEEeccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN---FTFKCHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~---~~~~~h~~~~   77 (147)
                      |++|+.||.|++||+++++. .......+..+|++++|+|++++|++|+.||.|++  ||..++...   ..+.+|..  
T Consensus       151 l~~g~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~--~~~~~~~~~~~~~~~~~h~~--  225 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLSGASV-SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP--YSVANNFELAHTNSWTFHTA--  225 (299)
T ss_dssp             EEEEETTSEEEEEEEETTEE-EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE--EEGGGTTEESCCCCCCCCSS--
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc--cccccccccccccccccccc--
Confidence            57899999999999988743 22122234567999999999999999999999999  565544332   23344443  


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                         ++.++                              +|+|++++||+|+.||.|+|||+++++
T Consensus       226 ---~v~~l------------------------------~~s~~~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         226 ---KVACV------------------------------SWSPDNVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             ---CEEEE------------------------------EECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             ---ccccc------------------------------cccccccceEEEcCCCEEEEEECCCCC
Confidence               35555                              999999999999999999999998754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3.8e-17  Score=121.53  Aligned_cols=145  Identities=13%  Similarity=0.016  Sum_probs=96.6

Q ss_pred             CeEeecCCeEEEEECCCCccceeE------ecCCCCcceEEEEEccCCCEEEEEee--CCeEEEEeecCCCCcceeEEEe
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKR------INSPLKYQMRCVAAFPDQQGFWVGSI--EGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~------~~~~~~~~i~~la~spdg~~l~~g~~--dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      ||+|+.||+|+|||+..++.....      ....+..+|.+++|+|+++++++++.  ++.+.+|+|+  +++.+.++.+
T Consensus        80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~  157 (325)
T d1pgua1          80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG  157 (325)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCS
T ss_pred             EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeec--ccccceeeee
Confidence            578999999999999876432110      01124457999999999999887754  6778885554  5677788888


Q ss_pred             ccCCce--EEeeccceeeee-cCCCcceeeee--ee--eeeeeeece----EEEEEecC-CCeEEEeCCCCcEEEeecCC
Q 032092           73 HRDGSE--TCSVISFTSILA-GDAPKYSSFYK--VK--RLHLFVKSH----VIVLFVQI-HHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        73 h~~~~~--~~~v~~~~~~~~-~~~~~~~~~~~--~~--~~~~~~~~~----~~~~fspd-g~~latg~~Dg~i~iWd~~~  140 (147)
                      |.....  .+....-.++++ |.|..+..+..  .+  .......+|    ..++|+|| +++|++|+.||.|++||+++
T Consensus       158 h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~  237 (325)
T d1pgua1         158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS  237 (325)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred             cccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc
Confidence            876532  232233233444 44444444331  11  111122333    56899997 58999999999999999999


Q ss_pred             ceeeecC
Q 032092          141 KQRLKVF  147 (147)
Q Consensus       141 ~~~~~~~  147 (147)
                      +++++++
T Consensus       238 ~~~~~~l  244 (325)
T d1pgua1         238 GEFLKYI  244 (325)
T ss_dssp             CCEEEEC
T ss_pred             ccccccc
Confidence            9887754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=7.9e-17  Score=120.42  Aligned_cols=142  Identities=12%  Similarity=0.144  Sum_probs=94.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecC-----------------CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINS-----------------PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ   63 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~-----------------~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~   63 (147)
                      ||+|+ |++|+|||+.+++. ...+..                 .+...|++|+|+|+|++|++|+.||.|++  ||...
T Consensus        77 lasg~-d~~i~iW~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i--~~~~~  152 (388)
T d1erja_          77 LATGC-NKTTQVYRVSDGSL-VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRI--WDIEN  152 (388)
T ss_dssp             EEEEC-BSCEEEEETTTCCE-EEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEE--EETTT
T ss_pred             EEEEe-CCeEEEEEecccce-EeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccc--ccccc
Confidence            56775 89999999998753 222211                 12345999999999999999999999999  67777


Q ss_pred             CcceeEEEeccCCceE--EeeccceeeeecCCCcceeeeeee-eeeeee---eceEEEEEec-CCCeEEEeCCCCcEEEe
Q 032092           64 QSKNFTFKCHRDGSET--CSVISFTSILAGDAPKYSSFYKVK-RLHLFV---KSHVIVLFVQ-IHHTFATAGSDGAFNFW  136 (147)
Q Consensus        64 ~~~~~~~~~h~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~fsp-dg~~latg~~Dg~i~iW  136 (147)
                      ++....+.+|......  +......++.++.+..++.+.... ......   .....+.|+| ++++|++|+.||.|++|
T Consensus       153 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~  232 (388)
T d1erja_         153 RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW  232 (388)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEe
Confidence            7777788888765322  222222233444444444443211 111111   2234566666 78999999999999999


Q ss_pred             ecCCceeeec
Q 032092          137 DKDSKQRLKV  146 (147)
Q Consensus       137 d~~~~~~~~~  146 (147)
                      |.++++.+.+
T Consensus       233 ~~~~~~~~~~  242 (388)
T d1erja_         233 DSETGFLVER  242 (388)
T ss_dssp             ETTTCCEEEE
T ss_pred             ecccCcccee
Confidence            9998776543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=8.8e-17  Score=117.26  Aligned_cols=140  Identities=11%  Similarity=0.148  Sum_probs=100.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ++++..|+.|++||+++++. ..... .+...+.++.++|+++.+++++.||+|++  ||.+++..+..+++|.....+.
T Consensus       174 ~~~~~~d~~i~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i--~d~~~~~~~~~~~~h~~~v~~~  249 (355)
T d1nexb2         174 VVSGSYDNTLIVWDVAQMKC-LYILS-GHTDRIYSTIYDHERKRCISASMDTTIRI--WDLENGELMYTLQGHTALVGLL  249 (355)
T ss_dssp             EEEEETTSCEEEEETTTTEE-EEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEE--EETTTCCEEEEECCCSSCCCEE
T ss_pred             eeeecccceeeeeecccccc-eeeee-ccccccccccccccceeeecccccceEEe--eecccccccccccccccccccc
Confidence            36788999999999998853 33333 34456899999999999999999999999  7888888888999998754444


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeece----EE-EEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSH----VI-VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ....-.+++++.|..++++ ++......+.+|    .. ..|+|++++|++| +||.|+|||++++++++.
T Consensus       250 ~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~  318 (355)
T d1nexb2         250 RLSDKFLVSAAADGSIRGW-DANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA  318 (355)
T ss_dssp             EECSSEEEEECTTSEEEEE-ETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS
T ss_pred             ccccceeeeeecccccccc-cccccceecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEE
Confidence            4444434444544444443 443333334444    23 4677788877766 599999999999988753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.72  E-value=1.2e-17  Score=121.50  Aligned_cols=101  Identities=22%  Similarity=0.293  Sum_probs=72.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEe-cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE--eccCCc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRI-NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK--CHRDGS   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~-~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~--~h~~~~   77 (147)
                      |++|+.||.|++||+.++....... ...|..+|++++|+|++++|++|+.||+|+|  ||.+++.....+.  .|... 
T Consensus       194 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~i--wd~~~~~~~~~~~~~~~~~~-  270 (299)
T d1nr0a2         194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV--WNMNKPSDHPIIIKGAHAMS-  270 (299)
T ss_dssp             EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTCTTSCCEEETTSSTTS-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEE--EECCCCCcceEEEecCCCCC-
Confidence            5789999999999998864321111 1234567999999999999999999999999  5555443322222  22221 


Q ss_pred             eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092           78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                         .+..                               .++|++++|+||+.||+|+|||+
T Consensus       271 ---~v~~-------------------------------~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         271 ---SVNS-------------------------------VIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             ---CEEE-------------------------------EEEEETTEEEEEETTSCEEEEEC
T ss_pred             ---cEEE-------------------------------EEECCCCEEEEEeCCCEEEEEec
Confidence               1222                               45677789999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-16  Score=115.82  Aligned_cols=141  Identities=13%  Similarity=0.144  Sum_probs=98.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +++++.|+.|++||++..+. ...+. .+  ......++++++++++|+.||+|++  ||.++++.+..+.+|.....+.
T Consensus       150 ~~~~~~d~~i~~~d~~~~~~-~~~~~-~~--~~~~~~~~~~~~~l~s~~~dg~i~~--~d~~~~~~~~~~~~~~~~v~~~  223 (342)
T d2ovrb2         150 VVSGAYDFMVKVWDPETETC-LHTLQ-GH--TNRVYSLQFDGIHVVSGSLDTSIRV--WDVETGNCIHTLTGHQSLTSGM  223 (342)
T ss_dssp             EEEEETTSCEEEEEGGGTEE-EEEEC-CC--SSCEEEEEECSSEEEEEETTSCEEE--EETTTCCEEEEECCCCSCEEEE
T ss_pred             eeeecCCCeEEEeeccccee-eEEEc-Cc--ccccccccCCCCEEEEEeCCCeEEE--eecccceeeeEecccccceeEE
Confidence            36788999999999988753 33333 22  2455667788999999999999999  7777788888888887655445


Q ss_pred             eeccceeeeecCCCcceeeeeee-eeeeeee---ceE--EEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           81 SVISFTSILAGDAPKYSSFYKVK-RLHLFVK---SHV--IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~--~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ....-.+++++.+..++++.... +....+.   .|.  ..+++++++++++|+.||+|+|||++++++++++
T Consensus       224 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         224 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence            55554445555555555554211 1122222   232  2456667789999999999999999999888753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.9e-17  Score=119.92  Aligned_cols=99  Identities=14%  Similarity=0.275  Sum_probs=76.1

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC----------CCEEEEEeeCCeEEEEeecCCC-CcceeE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD----------QQGFWVGSIEGRVGVHHLDDSQ-QSKNFT   69 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd----------g~~l~~g~~dg~i~i~~~d~~~-~~~~~~   69 (147)
                      |++|+.||.|++||+++++... .....|..+|.+++|+|+          +++|++|+.||+|+|  ||+++ .+....
T Consensus       177 l~~g~~dg~i~i~d~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i--w~~~~~~~~~~~  253 (287)
T d1pgua2         177 IAAGDVMGKILLYDLQSREVKT-SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI--YSVKRPMKIIKA  253 (287)
T ss_dssp             EEEEETTSCEEEEETTTTEEEE-CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE--EESSCTTCCEEE
T ss_pred             cccccccccccceeeccccccc-ccccccccccceeeecccccccccccCCCCeeEeecCCCeEEE--EECCCCCeEEEE
Confidence            5789999999999999885432 222345667999999875          468999999999999  56554 344445


Q ss_pred             EEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092           70 FKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK  138 (147)
Q Consensus        70 ~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~  138 (147)
                      +.+|..     .+.++                              +|+|++ .|+|+|.||.|++||+
T Consensus       254 ~~~h~~-----~V~~v------------------------------~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         254 LNAHKD-----GVNNL------------------------------LWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTSSTT-----CEEEE------------------------------EEEETT-EEEEEETTSCEEEEEE
T ss_pred             eCCCCC-----CeEEE------------------------------EECCCC-EEEEEECCCeEEEEEE
Confidence            557765     36666                              999986 5889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5e-17  Score=118.00  Aligned_cols=105  Identities=16%  Similarity=0.224  Sum_probs=77.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCC--CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSP--LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~--~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |++|+.||.|++||+...+. ...+...  +...+.+++  ++++++++|+.||+|++  ||+++++.+.++......++
T Consensus       230 l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~s~s~Dg~i~i--wd~~tg~~i~~~~~~~~~~~  304 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQ--FNKNFVITSSDDGTVKL--WDLKTGEFIRNLVTLESGGS  304 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEE--ECSSEEEEEETTSEEEE--EETTTCCEEEEEEECTTGGG
T ss_pred             EEEEcCCCEEEEEecccccc-cccccccceeeeceeecc--cCCCeeEEEcCCCEEEE--EECCCCCEEEEEecccCCCC
Confidence            58899999999999998754 3334332  223455554  55789999999999999  78888888887764332222


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCc----EEEeecCC
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGA----FNFWDKDS  140 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~----i~iWd~~~  140 (147)
                      ...+.++                              +|+|++++||+|+.||+    |++||++.
T Consensus       305 ~~~v~~v------------------------------~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         305 GGVVWRI------------------------------RASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TCEEEEE------------------------------EECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEE------------------------------EECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            2245555                              99999999999999985    99999863

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=2.1e-16  Score=115.24  Aligned_cols=106  Identities=13%  Similarity=0.203  Sum_probs=76.7

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ||+|+.||+|+|||+.+++ ++.++. .|+.+|++|+|+|+ ++|++|+.||+|++  |+....+.......+...   .
T Consensus        26 l~tgs~Dg~i~vWd~~~~~-~~~~l~-~H~~~V~~l~~s~~-~~l~s~s~D~~i~i--w~~~~~~~~~~~~~~~~~---~   97 (355)
T d1nexb2          26 VITGADDKMIRVYDSINKK-FLLQLS-GHDGGVWALKYAHG-GILVSGSTDRTVRV--WDIKKGCCTHVFEGHNST---V   97 (355)
T ss_dssp             EEEEETTTEEEEEETTTTE-EEEEEE-CCSSCEEEEEEETT-TEEEEEETTCCEEE--EETTTTEEEEEECCCSSC---E
T ss_pred             EEEEeCCCeEEEEECCCCc-EEEEEE-CCCCCEEEEEEcCC-CEEEEEeccccccc--cccccccccccccccccc---c
Confidence            6899999999999999985 445554 46678999999985 58999999999999  555544443333221111   0


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~  144 (147)
                      ....                              +.++|+++.+++++.|+.|++||+++.+.+
T Consensus        98 ~~~~------------------------------~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~  131 (355)
T d1nexb2          98 RCLD------------------------------IVEYKNIKYIVTGSRDNTLHVWKLPKESSV  131 (355)
T ss_dssp             EEEE------------------------------EEEETTEEEEEEEETTSEEEEEECCC----
T ss_pred             cccc------------------------------cccccccceeeeecCCCcEEEEEccCCcee
Confidence            1111                              278899999999999999999999876554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=7.4e-17  Score=122.52  Aligned_cols=113  Identities=13%  Similarity=0.142  Sum_probs=80.2

Q ss_pred             CeEeecCCeEEEEECCCCccc-------------e-eEecC--CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTE-------------F-KRINS--PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ   64 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~-------------~-~~~~~--~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~   64 (147)
                      +++++.||+|++||+......             . .....  .....+.+++|+||+ +||+|+.||+|+|  ||++++
T Consensus       139 ~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~i--wd~~~~  215 (393)
T d1sq9a_         139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI--SELSTL  215 (393)
T ss_dssp             EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE--EETTTT
T ss_pred             EEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEE--Eeeccc
Confidence            467889999999998543210             0 01111  122347899999998 8999999999999  777777


Q ss_pred             cceeEEEecc-CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCc---EEEeecCC
Q 032092           65 SKNFTFKCHR-DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGA---FNFWDKDS  140 (147)
Q Consensus        65 ~~~~~~~~h~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~---i~iWd~~~  140 (147)
                      +.+..+.... ...+..+|+++                              +|+|||++|++|+.|++   |++||+++
T Consensus       216 ~~~~~~~~~~~l~~h~~~V~~l------------------------------~~spdg~~l~sgs~D~t~~~i~lwd~~~  265 (393)
T d1sq9a_         216 RPLYNFESQHSMINNSNSIRSV------------------------------KFSPQGSLLAIAHDSNSFGCITLYETEF  265 (393)
T ss_dssp             EEEEEEECCC---CCCCCEEEE------------------------------EECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             ccccccccccccccccceEEEc------------------------------ccccccceeeeecCCCCcceeeeccccc
Confidence            7766654321 11122245555                              99999999999999875   99999999


Q ss_pred             ceeeec
Q 032092          141 KQRLKV  146 (147)
Q Consensus       141 ~~~~~~  146 (147)
                      ++++++
T Consensus       266 g~~~~~  271 (393)
T d1sq9a_         266 GERIGS  271 (393)
T ss_dssp             CCEEEE
T ss_pred             ceeeee
Confidence            887654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.4e-15  Score=106.74  Aligned_cols=140  Identities=14%  Similarity=0.171  Sum_probs=84.3

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      ||+|+.||+|+|||+++++ +...+. .|..+|.+|+|  ++++|++|+.||+|++  |+...+........+.......
T Consensus        28 l~sgs~Dg~i~vWd~~~~~-~~~~l~-~H~~~V~~v~~--~~~~l~s~s~D~~i~~--~~~~~~~~~~~~~~~~~~~~~~  101 (293)
T d1p22a2          28 IVSGLRDNTIKIWDKNTLE-CKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRV--WDVNTGEMLNTLIHHCEAVLHL  101 (293)
T ss_dssp             EEEEESSSCEEEEESSSCC-EEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEE--EESSSCCEEEEECCCCSCEEEE
T ss_pred             EEEEeCCCeEEEEECCCCc-EEEEEe-cCCCCEeeeec--ccceeecccccccccc--cccccccccccccccccccccc
Confidence            6899999999999999986 445554 46678988875  6889999999999999  5555444433332221111111


Q ss_pred             eeccceeeee-------------------------------------------cCCCcceeeeee-eeeeeeeeceE--E
Q 032092           81 SVISFTSILA-------------------------------------------GDAPKYSSFYKV-KRLHLFVKSHV--I  114 (147)
Q Consensus        81 ~v~~~~~~~~-------------------------------------------~~~~~~~~~~~~-~~~~~~~~~~~--~  114 (147)
                      ......++++                                           +.|..+..+... .+....+.+|.  .
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v  181 (293)
T d1p22a2         102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI  181 (293)
T ss_dssp             ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEccccccc
Confidence            1111111111                                           111111111110 11122334442  2


Q ss_pred             EEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092          115 VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus       115 ~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..+++++.+|++|+.||.|++||+++.+.+..
T Consensus       182 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  213 (293)
T d1p22a2         182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRV  213 (293)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ccccCCCCeEEEecCCCEEEEEecccceeeee
Confidence            56777888899999999999999888887764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.67  E-value=3.8e-16  Score=120.08  Aligned_cols=109  Identities=11%  Similarity=0.004  Sum_probs=78.0

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      +++++||+|+|||+.+++. +.++..+  ..+..++|||||+++++++.||++++  ||..+++.....+-.....+...
T Consensus        36 V~~~~dg~v~vwD~~t~~~-~~~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~v--wd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKI-VKVIDTG--YAVHISRMSASGRYLLVIGRDARIDM--IDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             EEETTTTEEEEEETTTCSE-EEEEECC--SSEEEEEECTTSCEEEEEETTSEEEE--EETTSSSCEEEEEEECCSEEEEE
T ss_pred             EEEcCCCEEEEEECCCCcE-EEEEeCC--CCeeEEEECCCCCEEEEEeCCCCEEE--EEccCCceeEEEEEeCCCCCcce
Confidence            5678899999999999864 5666543  35899999999999999999999999  55555554332221111111122


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeE-EEeCCCCcEEEeecCCceeee
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTF-ATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l-atg~~Dg~i~iWd~~~~~~~~  145 (147)
                      +.+.                              +|+|||+++ +++..|+.+++||.++++++.
T Consensus       111 ~~s~------------------------------~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~  145 (426)
T d1hzua2         111 ESSK------------------------------FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ  145 (426)
T ss_dssp             EECC------------------------------STTCTTTEEEEEEEESSEEEEEETTTCCEEE
T ss_pred             EEee------------------------------eecCCCCEEEEeecCCCeEEEEcCCccceeE
Confidence            3344                              899999876 455579999999999887654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=3.6e-16  Score=121.30  Aligned_cols=108  Identities=11%  Similarity=0.029  Sum_probs=79.2

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc--eeEEEeccCCceE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK--NFTFKCHRDGSET   79 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~--~~~~~~h~~~~~~   79 (147)
                      ++.+.||+|.|||.++++. ..++..+  ..+..++|||||+++++++.||++++  ||..+++.  ..+++.  ...+.
T Consensus        36 v~~~d~g~v~v~D~~t~~v-~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~--~d~~t~~~~~~~~i~~--~~~~~  108 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEI-KTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNM--IDLWMKEPTTVAEIKI--GSEAR  108 (432)
T ss_dssp             EEETTTTEEEEEETTTCCE-EEEEECS--SCEEEEEECTTSCEEEEEETTSEEEE--EETTSSSCCEEEEEEC--CSEEE
T ss_pred             EEEcCCCEEEEEECCCCcE-EEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEE--EEeeCCCceEEEEEec--CCCCC
Confidence            6789999999999999864 4556543  35899999999999999999999999  55544443  223321  11111


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeE-EEeCCCCcEEEeecCCceeeec
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTF-ATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l-atg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..+.+.                              +|+|||++| ++++.|+.|++||.++++++++
T Consensus       109 ~~~~s~------------------------------~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~  146 (432)
T d1qksa2         109 SIETSK------------------------------MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  146 (432)
T ss_dssp             EEEECC------------------------------STTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             CeEEec------------------------------ccCCCCCEEEEEcCCCCeEEEEeCccccceee
Confidence            123333                              789999875 7888899999999999887764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.1e-15  Score=110.28  Aligned_cols=117  Identities=36%  Similarity=0.611  Sum_probs=79.8

Q ss_pred             CeEeecCCeEEEEECCCCcccee-EecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCC----cceeEEEecc
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFK-RINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQ----SKNFTFKCHR   74 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~-~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~----~~~~~~~~h~   74 (147)
                      +++|+.||.|++||++..+.... .........+.+.++.| ++..+++++.||.+.+|+++....    .....+..++
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeee
Confidence            46889999999999988754221 11222334566666655 578999999999999977765421    1112222222


Q ss_pred             CC----ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092           75 DG----SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus        75 ~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      ..    .+.+.++                              .++|+|++++||||+.||.|+|||+++++++++|
T Consensus       243 ~~~~~~~~~~~v~------------------------------~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         243 LNLKDTNLAYPVN------------------------------SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             CCTTCCSSCCCEE------------------------------EEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             eccCCCcccccce------------------------------eEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence            10    1112222                              3499999999999999999999999999998865

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=3.5e-16  Score=113.03  Aligned_cols=115  Identities=12%  Similarity=0.154  Sum_probs=74.9

Q ss_pred             eEeecC-CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCccee-EEEeccCCceE
Q 032092            2 VVGTAD-RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF-TFKCHRDGSET   79 (147)
Q Consensus         2 ~~gs~d-g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~-~~~~h~~~~~~   79 (147)
                      ++++.+ +.|++|++...+.. .....++..++++|+|+|++++|++|+.||.|++  ||..+++... .+.+|..    
T Consensus       134 ~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i--~d~~~~~~~~~~~~~h~~----  206 (287)
T d1pgua2         134 AVGLEEGNTIQVFKLSDLEVS-FDLKTPLRAKPSYISISPSETYIAAGDVMGKILL--YDLQSREVKTSRWAFRTS----  206 (287)
T ss_dssp             EEEETTTSCEEEEETTEEEEE-EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTTEEEECCSCCCSS----
T ss_pred             eeeccccceeeeeecccccee-eeeeeccCCceeEEEeccCccccccccccccccc--eeeccccccccccccccc----
Confidence            455555 57999999876432 2333445667999999999999999999999999  7776655433 2345554    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC-ceee
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS-KQRL  144 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~-~~~~  144 (147)
                       ++.++   ....                 .+.....+.+++++||||+.|++|+|||+++ ++++
T Consensus       207 -~v~~~---~~~p-----------------~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~  251 (287)
T d1pgua2         207 -KINAI---SWKP-----------------AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII  251 (287)
T ss_dssp             -CEEEE---EECC-----------------CC------CCSCCEEEEEETTSCEEEEESSCTTCCE
T ss_pred             -cccee---eecc-----------------cccccccccCCCCeeEeecCCCeEEEEECCCCCeEE
Confidence             24443   0000                 0000013344567999999999999999876 4444

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=6e-15  Score=106.41  Aligned_cols=141  Identities=10%  Similarity=0.084  Sum_probs=88.5

Q ss_pred             CeEeecCCeEEEEECCCCccceeEec-CCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc-
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-   77 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-   77 (147)
                      ||+|+.||+|+|||+.++........ ..|..+|.+++|+|++ ..|++|+.||+|++  |+............+.... 
T Consensus        26 L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~--w~~~~~~~~~~~~~~~~~~~  103 (342)
T d1yfqa_          26 LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK--VDLIGSPSFQALTNNEANLG  103 (342)
T ss_dssp             EEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE--ECSSSSSSEEECBSCCCCSC
T ss_pred             EEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee--eecccccccccccccccccc
Confidence            68999999999999987643222111 1356789999999975 57899999999999  5655444444333332221 


Q ss_pred             --eEEeeccceeeeecCCCcceeeee-----eeeeeeeeece------EEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           78 --ETCSVISFTSILAGDAPKYSSFYK-----VKRLHLFVKSH------VIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        78 --~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                        .........+++++.+..+..+..     ..........+      ....+.+.++.+++++.|+.|++||+...+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  182 (342)
T d1yfqa_         104 ICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED  182 (342)
T ss_dssp             EEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT
T ss_pred             cccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcc
Confidence              112223333444455554444321     11111111111      2457888999999999999999999876543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-14  Score=102.78  Aligned_cols=128  Identities=15%  Similarity=0.160  Sum_probs=88.3

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      ++++.|+.|++||+++++. ...+.. +...+..+.+  ++..+++|+.||+|++  ||.++.+.+..+.+|........
T Consensus       152 ~~~s~d~~i~~~d~~~~~~-~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i--~d~~~~~~~~~~~~~~~~v~~~~  225 (293)
T d1p22a2         152 VSASGDRTIKVWNTSTCEF-VRTLNG-HKRGIACLQY--RDRLVVSGSSDNTIRL--WDIECGACLRVLEGHEELVRCIR  225 (293)
T ss_dssp             EEEETTSEEEEEETTTCCE-EEEEEC-CSSCEEEEEE--ETTEEEEEETTSCEEE--EETTTCCEEEEECCCSSCEEEEE
T ss_pred             ccccCCCceeeecCCCCcE-EEEEcc-cccccccccC--CCCeEEEecCCCEEEE--Eecccceeeeeecccceeeeecc
Confidence            5788999999999999863 444442 3345666655  4789999999999999  77777788777777766444444


Q ss_pred             eccceeeeecCCCcceeeeee----------eeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEee
Q 032092           82 VISFTSILAGDAPKYSSFYKV----------KRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWD  137 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd  137 (147)
                      .....+++++.|..+.++...          ......+.+|.    +++|  ++++|+|||.||+|+|||
T Consensus       226 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             ccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            444444455555555554310          11234566663    5666  567899999999999998

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=1.9e-14  Score=104.69  Aligned_cols=113  Identities=12%  Similarity=-0.015  Sum_probs=84.4

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCC-CcceEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPL-KYQMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~-~~~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |++++.|++|++||+++++. .+.+..+. ...+.+++|+|||+++ ++++.++.|.+  ||..+++.+.++..+.....
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~-~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v--~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK--IDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEE-EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEE--EETTTCCEEEEEECCBTTEE
T ss_pred             EEEEcCCCEEEEEECCCCeE-EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEE--EECCCCcEEEEEecCCCccc
Confidence            57899999999999999863 45554322 2346899999999986 56778999999  78888888877766543322


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC------------CCCcEEEeecCCceeeec
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG------------SDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~------------~Dg~i~iWd~~~~~~~~~  146 (147)
                      ...+..+                              +|+||+++++.++            .+..+.+||..+++.+.+
T Consensus        81 ~~~~~~v------------------------------~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (337)
T d1pbyb_          81 VKSLFGA------------------------------ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA  130 (337)
T ss_dssp             EECTTCE------------------------------EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred             ccceeeE------------------------------EEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe
Confidence            2233444                              9999999888776            467899999998877654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.54  E-value=3.3e-14  Score=104.41  Aligned_cols=101  Identities=10%  Similarity=0.059  Sum_probs=76.3

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCC--eEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG--RVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg--~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +.+.+|.|++||+..++. . ++  +|...|++++|||||+.|++++.++  .|++  ||..+++. ..+..|..     
T Consensus        19 a~~~~g~v~v~d~~~~~~-~-~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v--~d~~~~~~-~~~~~~~~-----   86 (360)
T d1k32a3          19 AFVSRGQAFIQDVSGTYV-L-KV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGI--YDYRTGKA-EKFEENLG-----   86 (360)
T ss_dssp             EEEETTEEEEECTTSSBE-E-EC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEE--EETTTCCE-EECCCCCC-----
T ss_pred             EEEECCeEEEEECCCCcE-E-Ec--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEE--EECCCCcE-EEeeCCCc-----
Confidence            345678999999988742 2 23  4556799999999999998877664  6777  77765443 34445543     


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .+..+                              +|+|||++|++++.|+.+++|+.++++...
T Consensus        87 ~v~~~------------------------------~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  121 (360)
T d1k32a3          87 NVFAM------------------------------GVDRNGKFAVVANDRFEIMTVDLETGKPTV  121 (360)
T ss_dssp             SEEEE------------------------------EECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             eEEee------------------------------eecccccccceeccccccccccccccceee
Confidence            24455                              999999999999999999999999877654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.50  E-value=1.5e-12  Score=93.32  Aligned_cols=140  Identities=12%  Similarity=0.063  Sum_probs=93.4

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCcceeEEEeccCC-ceE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SET   79 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~~   79 (147)
                      ++++.|++|.+||+.+++ ..+++..+  ..+..++|+|||+++ ++++.+++|.+  ||..+++.+.++..|... ...
T Consensus         6 V~~~~~~~v~v~D~~t~~-~~~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v--~d~~t~~~~~~~~~~~~~~~~~   80 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNK-VTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSI--IDTATNNVIATVPAGSSPQGVA   80 (301)
T ss_dssp             EEETTTTEEEEEETTTTE-EEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEE--EETTTTEEEEEEECSSSEEEEE
T ss_pred             EEECCCCEEEEEECCCCe-EEEEEECC--CCceEEEEeCCCCEEEEEECCCCEEEE--EECCCCceeeeeeccccccccc
Confidence            567889999999999986 34555432  346899999999976 56778999999  788888888887765432 122


Q ss_pred             EeeccceeeeecCCCcceeeeeee--eeeeeee---ceEEEEEecCCCeE-EEeCCCCcEEEeecCCceeeec
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVK--RLHLFVK---SHVIVLFVQIHHTF-ATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~fspdg~~l-atg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +......++.++.++.....+...  +....+.   ....++|+|||+.+ +++..|+.+.+|+..+++.+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeee
Confidence            323333344455555333333221  2222222   23468999999765 5666788999999998877653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.48  E-value=3.2e-13  Score=98.33  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=80.8

Q ss_pred             CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCcceeEEEeccCC-ce
Q 032092            1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SE   78 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~   78 (147)
                      |++++.|++|.+||+.+++ +++++..++...+.+++|+|||+++ ++++.++.|.+  ||..+++...++...... ..
T Consensus        11 l~~~~~~~~v~v~D~~t~~-~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~--~d~~t~~~~~~~~~~~~~~~~   87 (346)
T d1jmxb_          11 MIVTNYPNNLHVVDVASDT-VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG--IDLDTCKNTFHANLSSVPGEV   87 (346)
T ss_dssp             EEEEETTTEEEEEETTTTE-EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE--EETTTTEEEEEEESCCSTTEE
T ss_pred             EEEEcCCCEEEEEECCCCC-EEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEE--EeCccCeeeeeeccccccccc
Confidence            5789999999999999985 4555544444457899999999986 56668999999  777777777666532221 11


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC------------CCCcEEEeecCCceee
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG------------SDGAFNFWDKDSKQRL  144 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~------------~Dg~i~iWd~~~~~~~  144 (147)
                      ...+..+                              +|+|||++++.++            .++.+.+||..+++..
T Consensus        88 ~~~~~~v------------------------------~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (346)
T d1jmxb_          88 GRSMYSF------------------------------AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  135 (346)
T ss_dssp             EECSSCE------------------------------EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             CCceEEE------------------------------EEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence            2233444                              9999998887765            4778999998877654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.46  E-value=4.7e-13  Score=98.10  Aligned_cols=105  Identities=7%  Similarity=0.030  Sum_probs=78.7

Q ss_pred             CeEeecCC--eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            1 MVVGTADR--NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         1 l~~gs~dg--~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      |++++.+.  .|++||+++++.  +.+. .+...+.+++|+|||++|++++.++.+++  |+..+++....+..|..   
T Consensus        57 l~~~~~~~g~~v~v~d~~~~~~--~~~~-~~~~~v~~~~~spdg~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---  128 (360)
T d1k32a3          57 AFIHGTREGDFLGIYDYRTGKA--EKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMT--VDLETGKPTVIERSREA---  128 (360)
T ss_dssp             EEEEEETTEEEEEEEETTTCCE--EECC-CCCCSEEEEEECTTSSEEEEEETTSEEEE--EETTTCCEEEEEECSSS---
T ss_pred             EEEEEcCCCCEEEEEECCCCcE--EEee-CCCceEEeeeecccccccceecccccccc--ccccccceeeeeecccc---
Confidence            34555443  799999998753  3333 35567999999999999999999999999  67666676666666653   


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEe----------CCCCcEEEeecCCceeee
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATA----------GSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg----------~~Dg~i~iWd~~~~~~~~  145 (147)
                        .+.++                              +|+|||++||.+          ..++.+++||.++++...
T Consensus       129 --~~~~~------------------------------~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3         129 --MITDF------------------------------TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             --CCCCE------------------------------EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             --cccch------------------------------hhccceeeeeeeccccccceeeccccceeeeccccCceee
Confidence              24455                              999999999854          446679999999876543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.5e-13  Score=98.14  Aligned_cols=105  Identities=13%  Similarity=0.123  Sum_probs=70.1

Q ss_pred             eEeecCCeEEEEECCCCcc--ceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092            2 VVGTADRNLVVFNLQNPQT--EFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE   78 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~--~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~   78 (147)
                      ++++.|++|++||+.....  .++.+.  +..++++|+|||||++|++ +..|+.|.+|+++.....  .++..+.... 
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~~~~~--~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~--~~~~~~~~~~-   82 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA--LTFAAESALP-   82 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC--EEEEEEEECS-
T ss_pred             EECCCCCcEEEEEEcCCCCeEEEEEEc--CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc--EEEeeecccC-
Confidence            6778999999999976432  222333  3356899999999998855 455899999776654332  2232221100 


Q ss_pred             EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCCce
Q 032092           79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDSKQ  142 (147)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~~~  142 (147)
                       ..+..+                              +|+|||++|++++. ++.|.+|+.....
T Consensus        83 -~~p~~l------------------------------~~spDg~~l~v~~~~~~~v~~~~~~~~~  116 (333)
T d1ri6a_          83 -GSLTHI------------------------------STDHQGQFVFVGSYNAGNVSVTRLEDGL  116 (333)
T ss_dssp             -SCCSEE------------------------------EECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred             -CCceEE------------------------------EEcCCCCEEeecccCCCceeeecccccc
Confidence             012334                              99999998888875 6789999876544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.30  E-value=1.1e-11  Score=90.06  Aligned_cols=104  Identities=12%  Similarity=0.074  Sum_probs=77.7

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v   82 (147)
                      ++..++.+.+||+.+++.... ...++...+.++.++|++.+++.+.. +.|.+  ||..+++.+..+.. ..     .+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v--~d~~~~~~~~~~~~-~~-----~~  294 (346)
T d1jmxb_         225 TADLLYGYLSVDLKTGKTHTQ-EFADLTELYFTGLRSPKDPNQIYGVL-NRLAK--YDLKQRKLIKAANL-DH-----TY  294 (346)
T ss_dssp             CCEEEEEEEEEETTTCCEEEE-EEEECSSCEEEEEECSSCTTEEEEEE-SEEEE--EETTTTEEEEEEEC-SS-----CC
T ss_pred             eccCCceEEEEECCCCceEEE-EeecccceeEEEEEeCCCCEEEEecC-CeEEE--EECCCCcEEEEEcC-CC-----CE
Confidence            345567889999998864322 22234446788999999888877664 67888  78877777665542 11     24


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      .++                              +|+|||++|++|+.|+.|++||.++++.+.+
T Consensus       295 ~~v------------------------------a~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         295 YCV------------------------------AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             CEE------------------------------EECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             EEE------------------------------EEcCCCCEEEEEeCCCcEEEEECccCCEEEE
Confidence            555                              9999999999999999999999999998865

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.28  E-value=5.5e-11  Score=84.87  Aligned_cols=101  Identities=8%  Similarity=0.080  Sum_probs=72.9

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC---CeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE---GRVGVHHLDDSQQSKNFTFKCHRDGSETCS   81 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d---g~i~i~~~d~~~~~~~~~~~~h~~~~~~~~   81 (147)
                      ..++.+.+|+....+ .......  ...+..++++|+++.++++..+   ++|.+  ||..+++...++..+..      
T Consensus       177 ~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v--~D~~t~~~~~~~~~~~~------  245 (301)
T d1l0qa2         177 FDSMSISVIDTVTNS-VIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSM--IDTGTNKITARIPVGPD------  245 (301)
T ss_dssp             TTTTEEEEEETTTTE-EEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEE--EETTTTEEEEEEECCSS------
T ss_pred             cccccccccccccee-eeecccc--cCCcceeeccccccccccccccceeeeeee--eecCCCeEEEEEcCCCC------
Confidence            345677788887764 2333322  2347889999999988766543   67888  88887777666654331      


Q ss_pred             eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeE-EEeCCCCcEEEeecCCceeeec
Q 032092           82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTF-ATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l-atg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +..+                              +|+|||++| ++++.|+.|++||+++++++.+
T Consensus       246 ~~~v------------------------------a~spdg~~l~va~~~~~~i~v~D~~t~~~~~~  281 (301)
T d1l0qa2         246 PAGI------------------------------AVTPDGKKVYVALSFCNTVSVIDTATNTITAT  281 (301)
T ss_dssp             EEEE------------------------------EECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEE------------------------------EEeCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence            3445                              999999865 7888899999999999998875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.25  E-value=2.3e-11  Score=87.97  Aligned_cols=101  Identities=11%  Similarity=0.085  Sum_probs=76.1

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS   84 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~   84 (147)
                      +.++.+.+||+.+++....... ++...+..++++|++.+++++  ++.|++  ||..+++.+.++. +..     .+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~i~v--~d~~~~~~~~~~~-~~~-----~~~~  284 (337)
T d1pbyb_         216 AYRTGLLTMDLETGEMAMREVR-IMDVFYFSTAVNPAKTRAFGA--YNVLES--FDLEKNASIKRVP-LPH-----SYYS  284 (337)
T ss_dssp             GEEEEEEEEETTTCCEEEEEEE-ECSSCEEEEEECTTSSEEEEE--ESEEEE--EETTTTEEEEEEE-CSS-----CCCE
T ss_pred             ccCccEEEEEcCCCcEEEEEec-CCCcceEEEEecccceEEEEc--cccEEE--EECCCCcEEEEEc-CCC-----CEEE
Confidence            4566799999998864322222 333457889999999988765  488999  7888777776654 221     2445


Q ss_pred             ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092           85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~  146 (147)
                      +                              +|+|||++|++|+.|++|++||+++++.+.+
T Consensus       285 ~------------------------------~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         285 V------------------------------NVSTDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             E------------------------------EECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             E------------------------------EECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence            5                              9999999999999999999999999988765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.21  E-value=1.1e-11  Score=94.67  Aligned_cols=109  Identities=9%  Similarity=0.084  Sum_probs=73.5

Q ss_pred             eecCCeEEEEECCCCcc------ceeEecCCCCcceEEEEEccCCCEEEE-------EeeCCeEEEEeecCCCCcceeEE
Q 032092            4 GTADRNLVVFNLQNPQT------EFKRINSPLKYQMRCVAAFPDQQGFWV-------GSIEGRVGVHHLDDSQQSKNFTF   70 (147)
Q Consensus         4 gs~dg~v~iwdi~~~~~------~~~~~~~~~~~~i~~la~spdg~~l~~-------g~~dg~i~i~~~d~~~~~~~~~~   70 (147)
                      .+.|+.+.+|+......      ....+. .+...+.+++|+||++++++       |+.|++|+|  ||+.+++...++
T Consensus       272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~-g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~v--wd~~t~~~~~~~  348 (426)
T d1hzua2         272 HLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV--FDLKNLDAKYQV  348 (426)
T ss_dssp             CTTTCEEEEEECCTTTCTTTBTSEEEEEE-CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEE--EETTCTTSCCEE
T ss_pred             cCCCceEEEeeccccccccccceEeEEEe-cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEE--EECCCCCcCeEE
Confidence            45688999999876421      122333 34456899999999999994       667899999  788777776665


Q ss_pred             EeccCC----ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeE-EEe----CCCCcEEEeecCCc
Q 032092           71 KCHRDG----SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTF-ATA----GSDGAFNFWDKDSK  141 (147)
Q Consensus        71 ~~h~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l-atg----~~Dg~i~iWd~~~~  141 (147)
                      ..+...    .....+.                              +++|||||+++ +++    +.||.|+|||.+++
T Consensus       349 ~~~~~~~~~~~~~~rv~------------------------------~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~  398 (426)
T d1hzua2         349 LPIAEWADLGEGAKRVV------------------------------QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL  398 (426)
T ss_dssp             ECHHHHHCCCSSCCCEE------------------------------EEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred             eccchhcccCCCCccEE------------------------------EEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence            432210    0000111                              23999999865 443    45889999999999


Q ss_pred             eeee
Q 032092          142 QRLK  145 (147)
Q Consensus       142 ~~~~  145 (147)
                      +.+.
T Consensus       399 k~~~  402 (426)
T d1hzua2         399 KLKA  402 (426)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            8754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.18  E-value=7.5e-11  Score=90.84  Aligned_cols=118  Identities=8%  Similarity=-0.077  Sum_probs=78.3

Q ss_pred             CeEeecCCeEEEEECCCCccc-eeEecC--CCCcceEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            1 MVVGTADRNLVVFNLQNPQTE-FKRINS--PLKYQMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         1 l~~gs~dg~v~iwdi~~~~~~-~~~~~~--~~~~~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      |++++.||+|++||+.+++.. ...+..  .+...+.+.+|||||+++ ++++.+++|+|  ||..+++....+..|...
T Consensus        76 l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i--~d~~t~~~~~~~~~~~~~  153 (432)
T d1qksa2          76 LFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVI--MDGETLEPKKIQSTRGMT  153 (432)
T ss_dssp             EEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEE--EETTTCCEEEEEECCEEC
T ss_pred             EEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEE--EeCccccceeeeccCCcc
Confidence            478899999999999887531 122221  122235566778899986 67888999999  788888888888766532


Q ss_pred             ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCe-EEEeCCCCcEEEeecCCceee
Q 032092           77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHT-FATAGSDGAFNFWDKDSKQRL  144 (147)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~-latg~~Dg~i~iWd~~~~~~~  144 (147)
                           +.... +                  ........++++|+|+. +++...++.|.+||..+.+.+
T Consensus       154 -----~~~~~-~------------------~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~  198 (432)
T d1qksa2         154 -----YDEQE-Y------------------HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL  198 (432)
T ss_dssp             -----TTTCC-E------------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             -----cccee-c------------------cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc
Confidence                 11110 0                  00001123589999965 567777899999998876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=4.5e-11  Score=87.65  Aligned_cols=107  Identities=18%  Similarity=0.135  Sum_probs=73.7

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCC----------cceEEEEEccCCCEEEEEeeCC----------eEEEEeecC
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLK----------YQMRCVAAFPDQQGFWVGSIEG----------RVGVHHLDD   61 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~----------~~i~~la~spdg~~l~~g~~dg----------~i~i~~~d~   61 (147)
                      +.++.++.+++||+..++..+......+.          .....++++|+++.++....++          .|.+  ||.
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v--~d~  287 (355)
T d2bbkh_         210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV--LDA  287 (355)
T ss_dssp             EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE--EET
T ss_pred             EEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE--EeC
Confidence            56788999999999987532110000000          1134588999998877665543          5666  788


Q ss_pred             CCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCC--eEEEeCCCCcEEEeecC
Q 032092           62 SQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH--TFATAGSDGAFNFWDKD  139 (147)
Q Consensus        62 ~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~--~latg~~Dg~i~iWd~~  139 (147)
                      .+++.+.++..+.      .+..+                              +|+|||+  ++++++.|++|++||++
T Consensus       288 ~t~~~~~~~~~~~------~~~~~------------------------------a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         288 KTGERLAKFEMGH------EIDSI------------------------------NVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             TTCCEEEEEEEEE------EECEE------------------------------EECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CCCcEEEEecCCC------CEEEE------------------------------EEcCCCCeEEEEEECCCCEEEEEECC
Confidence            7777766665321      24455                              9999997  46788889999999999


Q ss_pred             Cceeeec
Q 032092          140 SKQRLKV  146 (147)
Q Consensus       140 ~~~~~~~  146 (147)
                      +++.+++
T Consensus       332 tg~~~~~  338 (355)
T d2bbkh_         332 SGEELRS  338 (355)
T ss_dssp             TCCEEEE
T ss_pred             CCCEEEE
Confidence            9998875

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.00  E-value=1.5e-09  Score=79.36  Aligned_cols=106  Identities=10%  Similarity=-0.073  Sum_probs=73.6

Q ss_pred             ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE----------eeCCeEEEEeecCCCCcceeEEEecc
Q 032092            5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG----------SIEGRVGVHHLDDSQQSKNFTFKCHR   74 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g----------~~dg~i~i~~~d~~~~~~~~~~~~h~   74 (147)
                      ..++.|.+||..+++ ++.++..+   ....++|||||++|++.          ..||.|.+  ||..+++...++..+.
T Consensus        25 ~~~~~v~v~D~~tg~-~~~~~~~g---~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v--~D~~t~~~~~~~~~~~   98 (355)
T d2bbkh_          25 AAVTQQFVIDGEAGR-VIGMIDGG---FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV--FDPVTLLPTADIELPD   98 (355)
T ss_dssp             CSSEEEEEEETTTTE-EEEEEEEC---SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE--ECTTTCCEEEEEEETT
T ss_pred             CCcCeEEEEECCCCc-EEEEEECC---CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE--EECCCCCEEEEEecCC
Confidence            346689999999986 34455322   23479999999988764          45789999  8888888877766543


Q ss_pred             CCce--EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEe--CCCCcEEEeecCCceeeec
Q 032092           75 DGSE--TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATA--GSDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        75 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg--~~Dg~i~iWd~~~~~~~~~  146 (147)
                      ....  ...+..+                              +|+|||++++.+  +.+..+.+||..+++.+.+
T Consensus        99 ~~~~~~~~~~~~~------------------------------~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d2bbkh_          99 APRFLVGTYPWMT------------------------------SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM  144 (355)
T ss_dssp             CCCCCBSCCGGGE------------------------------EECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             cceeecCCCCceE------------------------------EEecCCCeeEEecCCCCceeeeeecCCCcEeeE
Confidence            3210  0112223                              999999876655  4567899999999887653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.94  E-value=3.5e-08  Score=72.49  Aligned_cols=134  Identities=11%  Similarity=-0.060  Sum_probs=80.4

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe----------eCCeEEEEeecCCCCcceeEEEeccC
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS----------IEGRVGVHHLDDSQQSKNFTFKCHRD   75 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~----------~dg~i~i~~~d~~~~~~~~~~~~h~~   75 (147)
                      .++.|.+||..+++. +.++..+   ....++|||||++|++++          .++.|.+  ||..+++....+..+..
T Consensus        45 ~~~~v~v~D~~tg~~-~~~~~~~---~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v--~D~~t~~~~~~~~~~~~  118 (373)
T d2madh_          45 AIIQQWVLDAGSGSI-LGHVNGG---FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEV--FDPVTFLPIADIELPDA  118 (373)
T ss_pred             CCceEEEEECCCCCE-EEEEeCC---CCccEEEcCCCCEEEEEeecCCcccccccceEEEE--EECCCCcEEEEEecCCc
Confidence            456799999999864 4555422   234799999999998875          4578999  78888887777655543


Q ss_pred             Cce---------EEeeccceeeeec-CCC-cceeee-eeeeeeeeeeceEEEEEecCCC-eEEEeCCCCcEEEeecCCce
Q 032092           76 GSE---------TCSVISFTSILAG-DAP-KYSSFY-KVKRLHLFVKSHVIVLFVQIHH-TFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        76 ~~~---------~~~v~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~fspdg~-~latg~~Dg~i~iWd~~~~~  142 (147)
                      ...         .+..+...+.... ..+ .+..+. ...+..........+.|+|+|+ .+++.+.|+.+.+||..+++
T Consensus       119 ~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         119 PRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             ceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce
Confidence            211         1111111111111 111 111111 0111222333345679999995 56788999999999998776


Q ss_pred             eee
Q 032092          143 RLK  145 (147)
Q Consensus       143 ~~~  145 (147)
                      ...
T Consensus       199 ~~~  201 (373)
T d2madh_         199 AGA  201 (373)
T ss_pred             eeE
Confidence            654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.91  E-value=5.8e-09  Score=77.50  Aligned_cols=104  Identities=10%  Similarity=-0.148  Sum_probs=72.4

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe----------eCCeEEEEeecCCCCcceeEEEeccCC
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS----------IEGRVGVHHLDDSQQSKNFTFKCHRDG   76 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~----------~dg~i~i~~~d~~~~~~~~~~~~h~~~   76 (147)
                      +..|.+||..+++. ..++....   ...++|+|||+.+++.+          .|++|.+  ||..+++....+..+...
T Consensus        45 ~~~~~~~d~~~~~~-~~~~~~~~---~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v--~D~~t~~~~~~i~~p~~~  118 (368)
T d1mdah_          45 TTENWVSCAGCGVT-LGHSLGAF---LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEV--FDPVTFLPIADIELPDAP  118 (368)
T ss_dssp             SEEEEEEETTTTEE-EEEEEECT---TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEE--ECTTTCCEEEEEEETTSC
T ss_pred             cceEEEEeCCCCcE-EEEEeCCC---CCcceECCCCCEEEEEcccCccccccccCCeEEE--EECCCCcEeeeecCCccc
Confidence            34577779998863 34443222   23689999999988754          4788999  898888888777655432


Q ss_pred             ce--EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-CCCcEEEeecCCceeeec
Q 032092           77 SE--TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-SDGAFNFWDKDSKQRLKV  146 (147)
Q Consensus        77 ~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~Dg~i~iWd~~~~~~~~~  146 (147)
                      ..  ......+                              +|+|||++|+.+. .++.+.+||+.+++.+.+
T Consensus       119 ~~~~g~~p~~~------------------------------a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~  161 (368)
T d1mdah_         119 RFSVGPRVHII------------------------------GNCASSACLLFFLFGSSAAAGLSVPGASDDQL  161 (368)
T ss_dssp             SCCBSCCTTSE------------------------------EECTTSSCEEEEECSSSCEEEEEETTTEEEEE
T ss_pred             eecccCCccce------------------------------EECCCCCEEEEEeCCCCeEEEEECCCCcEeEE
Confidence            10  0012233                              9999998887765 578999999999887653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.91  E-value=1.3e-08  Score=74.92  Aligned_cols=107  Identities=10%  Similarity=0.075  Sum_probs=65.4

Q ss_pred             eEeecCCeEEEEECCCCccceeEecCCCC----------cceEEEEEccCCCEEE----------EEeeCCeEEEEeecC
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINSPLK----------YQMRCVAAFPDQQGFW----------VGSIEGRVGVHHLDD   61 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~----------~~i~~la~spdg~~l~----------~g~~dg~i~i~~~d~   61 (147)
                      +..+.++.+.+|+....+...........          .....++++|++..++          ....++.+.+  ||.
T Consensus       228 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~--~d~  305 (373)
T d2madh_         228 VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS--VTG  305 (373)
T ss_pred             EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE--EEC
Confidence            34567888999998876421111000000          1123456666665443          3444556666  666


Q ss_pred             CCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCC--eEEEeCCCCcEEEeecC
Q 032092           62 SQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH--TFATAGSDGAFNFWDKD  139 (147)
Q Consensus        62 ~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~--~latg~~Dg~i~iWd~~  139 (147)
                      .+++.+..+....      .+..+                              +|+|||+  ++++++.|++|++||+.
T Consensus       306 ~t~~~~~~~~~~~------~~~~~------------------------------a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         306 LVGQTSSQISLGH------DVDAI------------------------------SVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CCCcEEEEecCCC------CeeEE------------------------------EECCCCCEEEEEEeCCCCeEEEEECC
Confidence            6666555443211      13334                              9999997  45789999999999999


Q ss_pred             Cceeeec
Q 032092          140 SKQRLKV  146 (147)
Q Consensus       140 ~~~~~~~  146 (147)
                      +++.+++
T Consensus       350 tg~~~~~  356 (373)
T d2madh_         350 AGDQDQS  356 (373)
T ss_pred             CCCEEEE
Confidence            9998875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.88  E-value=2.9e-09  Score=81.67  Aligned_cols=101  Identities=12%  Similarity=0.103  Sum_probs=68.9

Q ss_pred             ecCCeEEEEECCCCccceeEecC----CCCcceEEEEEccCCCEEEEEee---------CCeEEEEeecCCCCcceeEEE
Q 032092            5 TADRNLVVFNLQNPQTEFKRINS----PLKYQMRCVAAFPDQQGFWVGSI---------EGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~----~~~~~i~~la~spdg~~l~~g~~---------dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      ..|+.+.+||+.+++.. ..+..    .+...|.+++|||||++|+.++.         ++.+.|  ||+.+++. ..+.
T Consensus        33 ~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l--~d~~~~~~-~~l~  108 (470)
T d2bgra1          33 KQENNILVFNAEYGNSS-VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI--YDLNKRQL-ITEE  108 (470)
T ss_dssp             ESSSCEEEEETTTCCEE-EEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE--EETTTTEE-CCSS
T ss_pred             EcCCcEEEEECCCCCEE-EEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE--EECCCCcc-cccc
Confidence            35788999999998642 22221    12235899999999999998754         456667  67765432 3333


Q ss_pred             eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092           72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus        72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                      .|...     +..                              ++|||||+.||.. .|+.+++|+..+++..+
T Consensus       109 ~~~~~-----~~~------------------------------~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1         109 RIPNN-----TQW------------------------------VTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             CCCTT-----EEE------------------------------EEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred             cCCcc-----ccc------------------------------cccccCcceeeEe-ecccceEEECCCCceee
Confidence            33321     222                              3999999999985 57889999998876543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=4e-08  Score=70.61  Aligned_cols=105  Identities=14%  Similarity=0.113  Sum_probs=64.6

Q ss_pred             eEeecCCeEEEEECCCCccceeEe-cCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRI-NSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~-~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      +++..|+.|++|++.......... .......+..++|+|||+++++++. ++++.+|.++............+..    
T Consensus        53 v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----  128 (333)
T d1ri6a_          53 VGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD----  128 (333)
T ss_dssp             EEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT----
T ss_pred             EEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCc----
Confidence            345568999999998654322211 1122234678999999999888774 7788885554432112222222221    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCCc
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDSK  141 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~~  141 (147)
                       .+.++                              .|+||+++++.++. +..|.+|+..+.
T Consensus       129 -~~~~v------------------------------~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_         129 -GCHSA------------------------------NISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             -TBCCC------------------------------EECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             -cceEE------------------------------EeeecceeeeccccccceeeEEEeccC
Confidence             24455                              89999987776664 457888887653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.57  E-value=3.1e-07  Score=67.86  Aligned_cols=76  Identities=13%  Similarity=0.165  Sum_probs=54.2

Q ss_pred             EEEEEccCCCEEEEEeeCC---------eEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeee
Q 032092           34 RCVAAFPDQQGFWVGSIEG---------RVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKR  104 (147)
Q Consensus        34 ~~la~spdg~~l~~g~~dg---------~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  104 (147)
                      ..++++|+++.+.+...++         .|.+  ||..+++.+.++...      ..+.++                   
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v--~D~~t~~~~~~~~~~------~~~~~~-------------------  319 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSS--VTASVGQTSGPISNG------HDSDAI-------------------  319 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEE--EESSSCCEEECCEEE------EEECEE-------------------
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEE--EECCCCcEeEEecCC------CceeEE-------------------
Confidence            4588999988766543332         3555  888877766554321      134555                   


Q ss_pred             eeeeeeceEEEEEecCCC--eEEEeCCCCcEEEeecCCceeeecC
Q 032092          105 LHLFVKSHVIVLFVQIHH--TFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       105 ~~~~~~~~~~~~fspdg~--~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                                 +|+|||+  +++++..|+.|++||..+++.++++
T Consensus       320 -----------a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         320 -----------IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             -----------EECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             -----------EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence                       9999996  3678888999999999999988753

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.31  E-value=8.4e-07  Score=67.55  Aligned_cols=56  Identities=9%  Similarity=0.005  Sum_probs=40.6

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcce
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN   67 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~   67 (147)
                      .++.+.|||+.+++.  ..+. .+...+..++|||||+.+|.. .++.+.+  ++...++..
T Consensus        90 ~~~~~~l~d~~~~~~--~~l~-~~~~~~~~~~~SPDG~~ia~~-~~~~l~~--~~~~~g~~~  145 (470)
T d2bgra1          90 YTASYDIYDLNKRQL--ITEE-RIPNNTQWVTWSPVGHKLAYV-WNNDIYV--KIEPNLPSY  145 (470)
T ss_dssp             EEEEEEEEETTTTEE--CCSS-CCCTTEEEEEECSSTTCEEEE-ETTEEEE--ESSTTSCCE
T ss_pred             cCceEEEEECCCCcc--cccc-cCCccccccccccCcceeeEe-ecccceE--EECCCCcee
Confidence            357889999999852  2232 233468899999999999985 5778888  777666543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.91  E-value=9.8e-05  Score=53.04  Aligned_cols=102  Identities=11%  Similarity=0.005  Sum_probs=63.1

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v   82 (147)
                      +...+++|..+|.... .  ..+. .....+.+++|+|||+.++++..++.+..++.+...+... .+......   ..+
T Consensus        44 t~~~~~~I~~i~p~g~-~--~~~~-~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~  115 (302)
T d2p4oa1          44 TNHEVGEIVSITPDGN-Q--QIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLPDA---IFL  115 (302)
T ss_dssp             EETTTTEEEEECTTCC-E--EEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECTTC---SCE
T ss_pred             EeCCCCEEEEEeCCCC-E--EEEE-cCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee-eccccCCc---ccc
Confidence            4444566666664432 1  1111 1223588999999999999998999988855544333221 11111111   012


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      +.+                              ++.|+|+++++-+.++.+..+|..++.
T Consensus       116 n~i------------------------------~~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1         116 NGI------------------------------TPLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             EEE------------------------------EESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cee------------------------------EEccCCCEEeeccccccceeeeccCCc
Confidence            333                              899999999998889999888877653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.76  E-value=0.0014  Score=48.18  Aligned_cols=61  Identities=11%  Similarity=0.020  Sum_probs=38.2

Q ss_pred             ecCCeEEEEECCCCccce--eEecC-CCCcceEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCc
Q 032092            5 TADRNLVVFNLQNPQTEF--KRINS-PLKYQMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQS   65 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~--~~~~~-~~~~~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~   65 (147)
                      ....+|.+|++.......  ..... ......+.++|+||++++ ++.-.+++|.+|++|..+..
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~  228 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM  228 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCce
Confidence            345678888876532211  11111 122357999999999976 55667899999777665443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.60  E-value=5.1e-05  Score=58.32  Aligned_cols=59  Identities=12%  Similarity=0.088  Sum_probs=39.7

Q ss_pred             eEeecCCeEEEEECCCCcccee-------Ee--cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeec
Q 032092            2 VVGTADRNLVVFNLQNPQTEFK-------RI--NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD   60 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~-------~~--~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d   60 (147)
                      +++..+++|.+||+.+.++.+.       .+  +....-...-.+|.++|..+.+...|.+|..|+++
T Consensus       274 ~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         274 ANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             EeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            5677899999999977543111       00  00011123446899999999999999999996654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.57  E-value=0.00075  Score=48.84  Aligned_cols=103  Identities=11%  Similarity=0.119  Sum_probs=66.0

Q ss_pred             ecCCeEEEEECCCCccce-----eEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092            5 TADRNLVVFNLQNPQTEF-----KRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET   79 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~-----~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~   79 (147)
                      +..+.|..||+.....+.     ..+..........|++.++|+.+++....+.|.+  +|+..++...++.....    
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~--~dp~~g~~~~~i~~p~~----  268 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV--FGPDGGQPKMRIRCPFE----  268 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE--ECTTCBSCSEEEECSSS----
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE--EeCCCCEEEEEEECCCC----
Confidence            456677777776432211     1111111122467999999999888888899998  88876665555543221    


Q ss_pred             EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCC-eEEEeCCCCcEEEeecCC-ceee
Q 032092           80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH-TFATAGSDGAFNFWDKDS-KQRL  144 (147)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~-~latg~~Dg~i~iWd~~~-~~~~  144 (147)
                       .+.++                              +|.||++ +++|.+.+|.|.-.++.. |+.+
T Consensus       269 -~~t~~------------------------------afg~d~~~lyVt~~~~g~i~~~~~~~~G~~~  304 (314)
T d1pjxa_         269 -KPSNL------------------------------HFKPQTKTIFVTEHENNAVWKFEWQRNGKKQ  304 (314)
T ss_dssp             -CEEEE------------------------------EECTTSSEEEEEETTTTEEEEEECSSCBCCC
T ss_pred             -CEEEE------------------------------EEeCCCCEEEEEECCCCcEEEEECCCCChhh
Confidence             13334                              9999995 678888889898888753 4443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.41  E-value=0.0012  Score=48.58  Aligned_cols=77  Identities=8%  Similarity=0.056  Sum_probs=47.0

Q ss_pred             ceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeE--EEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeee
Q 032092           32 QMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFT--FKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLF  108 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~--~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (147)
                      .+.+++|+|||+++++.+. ..+|.+++++. ++.....  .......                                
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~-~g~~~~~~~~~~~~~g--------------------------------  192 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLA-SGEVELVGSVDAPDPG--------------------------------  192 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECT-TSCEEEEEEEECSSTT--------------------------------
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccC-CCceeeccceeecCCC--------------------------------
Confidence            4789999999998777654 55777754443 2322111  1100000                                


Q ss_pred             eeceEEEEEecCCCeE-EEeCCCCcEEEeecCCce
Q 032092          109 VKSHVIVLFVQIHHTF-ATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus       109 ~~~~~~~~fspdg~~l-atg~~Dg~i~iWd~~~~~  142 (147)
                       .+-..++|+|+|+++ ++...+++|.+|+..+++
T Consensus       193 -~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         193 -DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             -CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             -CceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence             011234999999876 555568899999987654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.41  E-value=0.0036  Score=43.96  Aligned_cols=102  Identities=7%  Similarity=0.038  Sum_probs=64.4

Q ss_pred             EeecCCeEEEEECCCCccceeEecCC-CCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSP-LKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETC   80 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~-~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~   80 (147)
                      +....+.|++||... + ...++... .-.....|++.|+|+.+++-.. ++.|.+  ++. +|+.+.++.......   
T Consensus       173 ~d~~~~~V~~~d~~G-~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~--f~~-~G~~~~~~~~~~~~~---  244 (279)
T d1q7fa_         173 SDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI--FTQ-DGQLISALESKVKHA---  244 (279)
T ss_dssp             EEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE--ECT-TSCEEEEEEESSCCS---
T ss_pred             eeccccceeeeecCC-c-eeeeecccccccCCcccccccCCeEEEEECCCCcEEEE--ECC-CCCEEEEEeCCCCCC---
Confidence            345567888888754 2 23344321 1224689999999997776543 457888  775 477666664322111   


Q ss_pred             eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      .+..+                              ++.|||+++++. .+..|++|..+....
T Consensus       245 ~p~~v------------------------------av~~dG~l~V~~-~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         245 QCFDV------------------------------ALMDDGSVVLAS-KDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CEEEE------------------------------EEETTTEEEEEE-TTTEEEEEECSCCCC
T ss_pred             CEeEE------------------------------EEeCCCcEEEEe-CCCeEEEEEeeeecC
Confidence            12233                              899999876665 688999999876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.38  E-value=0.0016  Score=49.72  Aligned_cols=52  Identities=12%  Similarity=-0.013  Sum_probs=35.1

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCE-EEEEeeCCeEE
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQG-FWVGSIEGRVG   55 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~-l~~g~~dg~i~   55 (147)
                      +...++.|.++|+++++. .+.+..+....+..++|+|||++ ++++..+..+.
T Consensus        89 ~d~~~~rVavIDl~t~k~-~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~  141 (441)
T d1qnia2          89 NDKANTRVARIRLDIMKT-DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIP  141 (441)
T ss_dssp             EETTTTEEEEEETTTTEE-EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEE
T ss_pred             EcCCCCEEEEEECCCCcE-eeEEecCCCCCccceEEeccCCEEEEEeccCCccc
Confidence            445688999999999863 34444444456889999999985 34444444443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.37  E-value=0.0004  Score=49.71  Aligned_cols=69  Identities=13%  Similarity=0.070  Sum_probs=48.7

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS  111 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (147)
                      .+..+|++|||+.+++...+++|..  +|+. ++. ..+.....     .++.+                          
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~--i~p~-g~~-~~~~~~~~-----~~~gl--------------------------   73 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVS--ITPD-GNQ-QIHATVEG-----KVSGL--------------------------   73 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEE--ECTT-CCE-EEEEECSS-----EEEEE--------------------------
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEE--EeCC-CCE-EEEEcCCC-----CcceE--------------------------
Confidence            4789999999999999999999876  7764 332 22221111     23444                          


Q ss_pred             eEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092          112 HVIVLFVQIHHTFATAGSDGAFNFWDKD  139 (147)
Q Consensus       112 ~~~~~fspdg~~latg~~Dg~i~iWd~~  139 (147)
                          +|.|||+++++...++.+..|+..
T Consensus        74 ----a~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          74 ----AFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             ----EECTTSCEEEEEECTTSCEEEEEE
T ss_pred             ----EEcCCCCeEEEecCCceEEEEEec
Confidence                889999888888777777777654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00055  Score=52.38  Aligned_cols=102  Identities=7%  Similarity=-0.011  Sum_probs=60.3

Q ss_pred             ecCCeEEEEECCCCccceeEecC-C-CCcceEEEEEccCCCEEEEEee---------CCeEEEEeecCCCCcceeEEEec
Q 032092            5 TADRNLVVFNLQNPQTEFKRINS-P-LKYQMRCVAAFPDQQGFWVGSI---------EGRVGVHHLDDSQQSKNFTFKCH   73 (147)
Q Consensus         5 s~dg~v~iwdi~~~~~~~~~~~~-~-~~~~i~~la~spdg~~l~~g~~---------dg~i~i~~~d~~~~~~~~~~~~h   73 (147)
                      ..+|.|.+||+.+++.. ..+.. . ....+.+..||||+++++....         .+.+.+  +|+.+++.. .+...
T Consensus        34 ~~~g~i~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i--~d~~~~~~~-~l~~~  109 (465)
T d1xfda1          34 EQKGTVRLWNVETNTST-VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL--SKIPHGDPQ-SLDPP  109 (465)
T ss_dssp             CSSSCEEEBCGGGCCCE-EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE--EESSSCCCE-ECCCT
T ss_pred             eCCCcEEEEECCCCCEE-EEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEE--EEccCCcee-eccCc
Confidence            35788999999987542 11221 1 1235778899999999887643         455666  666554332 12110


Q ss_pred             cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092           74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR  143 (147)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~  143 (147)
                      ....  ..+...                              .|||||+.||=.. ++.+.+.+..++..
T Consensus       110 ~~~~--~~l~~~------------------------------~wSPDG~~iafv~-~~nl~~~~~~~~~~  146 (465)
T d1xfda1         110 EVSN--AKLQYA------------------------------GWGPKGQQLIFIF-ENNIYYCAHVGKQA  146 (465)
T ss_dssp             TCCS--CCCSBC------------------------------CBCSSTTCEEEEE-TTEEEEESSSSSCC
T ss_pred             cCCc--ccccee------------------------------eeccCCceEEEEe-cceEEEEecCCCce
Confidence            0000  001112                              8999998877654 67788888766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.0015  Score=44.85  Aligned_cols=95  Identities=12%  Similarity=0.005  Sum_probs=54.2

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEEeecccee
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTS   87 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~   87 (147)
                      .|.+.++.....  .... ..........++|+++.++..+. .|...++..|...+..  ....+..     ...    
T Consensus       152 ~i~~~~~~~~~~--~~~~-~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~-----~~~----  217 (269)
T d2hqsa1         152 QVYKVNINGGAP--QRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-----LDE----  217 (269)
T ss_dssp             EEEEEETTSSCC--EECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-----SCE----
T ss_pred             eEeeeecccccc--eeee-cccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCc-----ccc----
Confidence            455566666532  2222 12234667799999998876655 4455555566653322  1111110     011    


Q ss_pred             eeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEe---CCCCcEEEeecCCcee
Q 032092           88 ILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATA---GSDGAFNFWDKDSKQR  143 (147)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg---~~Dg~i~iWd~~~~~~  143 (147)
                                                ...|||||+.||-.   +....+++|+++.+..
T Consensus       218 --------------------------~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         218 --------------------------TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             --------------------------EEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             --------------------------ceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence                                      23899999887633   3345789999987654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.17  E-value=0.0037  Score=42.85  Aligned_cols=57  Identities=14%  Similarity=0.157  Sum_probs=36.3

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CC---eEEEEeecCCCCc
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EG---RVGVHHLDDSQQS   65 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg---~i~i~~~d~~~~~   65 (147)
                      .+|.|.++|+..++.  ..+.. ....+...+|||||+.||.... ++   ...||-++...++
T Consensus        19 ~~~dl~~~d~~~g~~--~~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2          19 CCDDLWEHDLKSGST--RKIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             ETTEEEEEETTTCCE--EEEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             eCCcEEEEECCCCCE--EEEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            456788889998753  33433 2345788999999999985432 22   2334446665443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.65  E-value=0.025  Score=44.00  Aligned_cols=28  Identities=21%  Similarity=0.111  Sum_probs=24.0

Q ss_pred             CCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          120 IHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       120 dg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+.++.+|+.||.++-+|.++|+.|.+|
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~  501 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence            4567777999999999999999998764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.60  E-value=0.013  Score=45.55  Aligned_cols=31  Identities=10%  Similarity=0.135  Sum_probs=26.4

Q ss_pred             EecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       117 fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+-.|.++.+|+.||.++.+|.++|+.|.+|
T Consensus       484 lstagglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence            4446778888999999999999999999875

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.52  E-value=0.025  Score=39.38  Aligned_cols=61  Identities=15%  Similarity=0.136  Sum_probs=37.6

Q ss_pred             cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      .++.|..++... + ....+....-.....+++.++|+.+++....+.+.+  ++.. ++.+.++.
T Consensus        91 ~~~~i~~~~~~g-~-~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~--~~~~-g~~~~~~g  151 (279)
T d1q7fa_          91 PTHQIQIYNQYG-Q-FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVII--FDQN-GNVLHKFG  151 (279)
T ss_dssp             GGCEEEEECTTS-C-EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEE--ECTT-SCEEEEEE
T ss_pred             Cccccccccccc-c-ceeecCCCcccccceeccccCCcEEEEeeccceeeE--eccC-Cceeeccc
Confidence            344666666543 2 222332222234678999999998888888888877  7753 55555553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.015  Score=40.24  Aligned_cols=99  Identities=5%  Similarity=-0.079  Sum_probs=59.9

Q ss_pred             EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092            3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV   82 (147)
Q Consensus         3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v   82 (147)
                      +...++.|..+|.......  ......-.....|++.|+|+.+++....++|..  ++.... ....+..-.   . ..+
T Consensus       156 ~~~~~~~i~~~d~~~~~~~--~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~--~~~~~~-~~~~~~~~~---~-~~P  226 (260)
T d1rwia_         156 TDTDNNRVVKLEAESNNQV--VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK--LLAGST-TSTVLPFTG---L-NTP  226 (260)
T ss_dssp             EEGGGTEEEEECTTTCCEE--ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEE--ECTTCS-CCEECCCCS---C-CCE
T ss_pred             eccccccccccccccceee--eeeccccCCCccceeeeeeeeeeeecCCCEEEE--EeCCCC-eEEEEccCC---C-CCe
Confidence            3455677888887754321  222122234688999999998888888888877  665422 111111000   0 012


Q ss_pred             ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092           83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS  140 (147)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~  140 (147)
                      ..+                              ++.++|+++++-..++.|+..+...
T Consensus       227 ~~i------------------------------~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         227 LAV------------------------------AVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             EEE------------------------------EECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             EEE------------------------------EEeCCCCEEEEECCCCEEEEEeCCC
Confidence            333                              9999999888877777777666543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.45  E-value=0.042  Score=42.53  Aligned_cols=31  Identities=13%  Similarity=0.202  Sum_probs=25.7

Q ss_pred             EecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       117 fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+-.|.++..|+.||.++-+|.++|+.|.+|
T Consensus       465 l~TagglVF~G~~dg~l~A~Da~tGe~LW~~  495 (560)
T d1kv9a2         465 LSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (560)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eEECCCEEEEECCCCcEEEEECCCCcEeEEE
Confidence            3445667778999999999999999999765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.016  Score=39.47  Aligned_cols=52  Identities=15%  Similarity=0.104  Sum_probs=31.2

Q ss_pred             eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCC-eEEEEeecCCC
Q 032092            9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG-RVGVHHLDDSQ   63 (147)
Q Consensus         9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg-~i~i~~~d~~~   63 (147)
                      .|.|.|....+. . .+... ..++.+-+|||||+.||...... ...++..+...
T Consensus        20 ~l~i~d~dG~~~-~-~l~~~-~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~   72 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-F-VVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN   72 (269)
T ss_dssp             EEEEEETTSCSC-E-EEEEE-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred             EEEEEcCCCCCc-E-EEecC-CCceeeeEECCCCCEEEEEEeeccCcceeeeeccc
Confidence            688889875432 2 23221 24578899999999999654433 22333355543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.40  E-value=0.0073  Score=41.23  Aligned_cols=68  Identities=12%  Similarity=0.016  Sum_probs=41.4

Q ss_pred             EEccC--CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEE
Q 032092           37 AAFPD--QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVI  114 (147)
Q Consensus        37 a~spd--g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (147)
                      ..|||  |+.+|-.+ +|.|.+  +|+..++. ..+..+..     ....                              
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~--~d~~~g~~-~~Lt~~~~-----~~~~------------------------------   45 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWE--HDLKSGST-RKIVSNLG-----VINN------------------------------   45 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEE--EETTTCCE-EEEECSSS-----EEEE------------------------------
T ss_pred             ccCCCCCCCEEEEEe-CCcEEE--EECCCCCE-EEEecCCC-----cccC------------------------------
Confidence            46798  99887654 566655  78775544 34443321     1222                              


Q ss_pred             EEEecCCCeEEEeC----CC--CcEEEeecCCcee
Q 032092          115 VLFVQIHHTFATAG----SD--GAFNFWDKDSKQR  143 (147)
Q Consensus       115 ~~fspdg~~latg~----~D--g~i~iWd~~~~~~  143 (147)
                      .+|||||+.||-..    .+  ..|.+.++.+++.
T Consensus        46 p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2          46 ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             EEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             EEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            29999999887432    22  2477777776654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.39  E-value=0.05  Score=42.25  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=26.4

Q ss_pred             EecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       117 fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+..|.++.+|+.||.++-+|.++|+.|.+|
T Consensus       493 lstagglVF~Gt~dg~l~A~Da~TGe~LW~~  523 (582)
T d1flga_         493 LATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eEEcCCeEEEeCCCCeEEEEECCCCcEeEEE
Confidence            4456777778999999999999999999865

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.008  Score=45.63  Aligned_cols=56  Identities=9%  Similarity=0.072  Sum_probs=36.1

Q ss_pred             cCCeEEEEECCCCccceeEecCC--CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092            6 ADRNLVVFNLQNPQTEFKRINSP--LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         6 ~dg~v~iwdi~~~~~~~~~~~~~--~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      ..+.+.|||+.+++.  ..+...  ....+....|||||+.+|-.. ++.+.+  .+...+..
T Consensus        89 ~~~~~~i~d~~~~~~--~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~--~~~~~~~~  146 (465)
T d1xfda1          89 YTGYYVLSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYY--CAHVGKQA  146 (465)
T ss_dssp             CCSEEEEEESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEE--ESSSSSCC
T ss_pred             ccccEEEEEccCCce--eeccCccCCccccceeeeccCCceEEEEe-cceEEE--EecCCCce
Confidence            456788999998753  223221  112355678999999998765 567766  66654433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.84  E-value=0.15  Score=39.66  Aligned_cols=31  Identities=19%  Similarity=0.155  Sum_probs=26.1

Q ss_pred             EecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092          117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKVF  147 (147)
Q Consensus       117 fspdg~~latg~~Dg~i~iWd~~~~~~~~~~  147 (147)
                      .+..|.++..|+.||.++-+|.++|+.|.+|
T Consensus       480 lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~  510 (596)
T d1w6sa_         480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (596)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eEecCCEEEEECCCCeEEEEECCCCcEeeEE
Confidence            3456777778999999999999999999765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.81  E-value=0.075  Score=36.40  Aligned_cols=29  Identities=17%  Similarity=0.059  Sum_probs=24.2

Q ss_pred             ceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092           32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS   62 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~   62 (147)
                      ..+.|+++|+|+.+++...++.|..  +|..
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~--~d~~  169 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVK--LEAE  169 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEE--ECTT
T ss_pred             CcceeeecCCCCEeeeccccccccc--cccc
Confidence            3578999999999888888898888  6664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.49  E-value=0.04  Score=39.28  Aligned_cols=80  Identities=11%  Similarity=0.023  Sum_probs=47.9

Q ss_pred             eEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCcceeEEEe---ccCCceEEeeccceeeeecCCCcceeeeeeeeeeee
Q 032092           33 MRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNFTFKC---HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLF  108 (147)
Q Consensus        33 i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~~~~~---h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (147)
                      .+.|+|+||++.| ++-+..++|..++++.. +........   +..... ..+..+                       
T Consensus       179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~-g~~~~~~~~~~~~~~~~~-~~PdGl-----------------------  233 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANRLHRIALEDD-GVTIQPFGATIPYYFTGH-EGPDSC-----------------------  233 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTT-SSSEEEEEEEEEEECCSS-SEEEEE-----------------------
T ss_pred             eeeeeeccccceEEEecccCCceEEEEEcCC-CceeccccceeeeccCCc-cceeee-----------------------
Confidence            4669999999865 55566888888555432 222211111   000000 012233                       


Q ss_pred             eeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092          109 VKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK  145 (147)
Q Consensus       109 ~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~  145 (147)
                             ++.++|+++++...++.|.++|- +++.+.
T Consensus       234 -------~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~  262 (319)
T d2dg1a1         234 -------CIDSDDNLYVAMYGQGRVLVFNK-RGYPIG  262 (319)
T ss_dssp             -------EEBTTCCEEEEEETTTEEEEECT-TSCEEE
T ss_pred             -------eEcCCCCEEEEEcCCCEEEEECC-CCcEEE
Confidence                   88889988888878889999984 566654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.42  E-value=0.26  Score=34.80  Aligned_cols=29  Identities=3%  Similarity=-0.059  Sum_probs=22.4

Q ss_pred             ceEEEEEecCCCeE-EEeCCCCcEEEeecC
Q 032092          111 SHVIVLFVQIHHTF-ATAGSDGAFNFWDKD  139 (147)
Q Consensus       111 ~~~~~~fspdg~~l-atg~~Dg~i~iWd~~  139 (147)
                      .-+.++|+||++.| ++-+..+.|..+|++
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEc
Confidence            34679999999754 555668899999875

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.81  E-value=0.09  Score=37.49  Aligned_cols=52  Identities=8%  Similarity=-0.028  Sum_probs=30.5

Q ss_pred             EEEEECCCCccc-eeEecCCCCcceEEEEEccCCCEEEEEeeC-CeEEEEeecCCC
Q 032092           10 LVVFNLQNPQTE-FKRINSPLKYQMRCVAAFPDQQGFWVGSIE-GRVGVHHLDDSQ   63 (147)
Q Consensus        10 v~iwdi~~~~~~-~~~~~~~~~~~i~~la~spdg~~l~~g~~d-g~i~i~~~d~~~   63 (147)
                      +.+||..+++-. ......++.......++.+||+.++.|+.+ .++.+  +|+.+
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~--yd~~~  107 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL--YDSSS  107 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE--EEGGG
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE--ecCcc
Confidence            567888876421 111111211112356788999999998765 57877  67654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=94.64  E-value=0.079  Score=37.64  Aligned_cols=27  Identities=11%  Similarity=0.123  Sum_probs=17.7

Q ss_pred             EEecCCCeEEEeCCCCcEEEeecCCce
Q 032092          116 LFVQIHHTFATAGSDGAFNFWDKDSKQ  142 (147)
Q Consensus       116 ~fspdg~~latg~~Dg~i~iWd~~~~~  142 (147)
                      ++-++|+++++....+.|.+||-+.++
T Consensus       232 avD~~GnlyVa~~~~g~I~~~dp~~g~  258 (314)
T d1pjxa_         232 DFDEDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred             EEecCCcEEEEEcCCCEEEEEeCCCCE
Confidence            666777766666566677777765544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.00  E-value=0.54  Score=32.73  Aligned_cols=44  Identities=7%  Similarity=-0.043  Sum_probs=26.3

Q ss_pred             eEeecCCeEEEEECCCCccceeEecC-C---CCcceEEEEEccCCCEEEEE
Q 032092            2 VVGTADRNLVVFNLQNPQTEFKRINS-P---LKYQMRCVAAFPDQQGFWVG   48 (147)
Q Consensus         2 ~~gs~dg~v~iwdi~~~~~~~~~~~~-~---~~~~i~~la~spdg~~l~~g   48 (147)
                      ++|+.+ .+.++|..+++.  ..+.. .   ....++.+.+.|+|+..++.
T Consensus        73 ~va~~~-gl~~~d~~tg~~--~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~  120 (295)
T d2ghsa1          73 LIASDD-GLFLRDTATGVL--TLHAELESDLPGNRSNDGRMHPSGALWIGT  120 (295)
T ss_dssp             EEEETT-EEEEEETTTCCE--EEEECSSTTCTTEEEEEEEECTTSCEEEEE
T ss_pred             EEEEeC-ccEEeeccccee--eEEeeeecCCCcccceeeEECCCCCEEEEe
Confidence            345544 588899888753  22211 1   11247888899998765553

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.44  E-value=0.61  Score=32.44  Aligned_cols=52  Identities=17%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK   66 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~   66 (147)
                      .++|..||..+++.  ..+..+  ..+.++++.++|+.+++ +.+| +.+  +|..+++.
T Consensus        39 ~~~I~r~d~~~g~~--~~~~~~--~~~~~i~~~~dg~l~va-~~~g-l~~--~d~~tg~~   90 (295)
T d2ghsa1          39 ERELHELHLASGRK--TVHALP--FMGSALAKISDSKQLIA-SDDG-LFL--RDTATGVL   90 (295)
T ss_dssp             GTEEEEEETTTTEE--EEEECS--SCEEEEEEEETTEEEEE-ETTE-EEE--EETTTCCE
T ss_pred             CCEEEEEECCCCeE--EEEECC--CCcEEEEEecCCCEEEE-EeCc-cEE--eeccccee
Confidence            46677777777643  223222  35789999998866654 5554 555  78776654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.88  E-value=0.64  Score=34.96  Aligned_cols=28  Identities=11%  Similarity=0.038  Sum_probs=22.1

Q ss_pred             EEEEEecCCCeEEEeCC-CCcEEEeecCC
Q 032092          113 VIVLFVQIHHTFATAGS-DGAFNFWDKDS  140 (147)
Q Consensus       113 ~~~~fspdg~~latg~~-Dg~i~iWd~~~  140 (147)
                      ..+..+|||++++.++. +.++-+.|+++
T Consensus       278 HGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             CCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             CceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            35799999988665554 88999999864

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.56  E-value=0.21  Score=38.60  Aligned_cols=61  Identities=8%  Similarity=0.115  Sum_probs=42.2

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      .|.|.-+|+.+++..-+... +  .++.+=.++-.|..+.+|+.||.++.  +|.++|+.+.+++-
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~-~--~p~~~g~lstagglVF~Gt~dg~l~A--~Da~TGe~LW~~~~  525 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKE-H--LPLWAGVLATAGNLVFTGTGDGYFKA--FDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEE-S--SCCCSCCEEETTTEEEEECTTSEEEE--EETTTCCEEEEEEC
T ss_pred             CCeEEEEcCCCCcEEeecCC-C--CCCccceeEEcCCeEEEeCCCCeEEE--EECCCCcEeEEEEC
Confidence            47788899999975433221 1  12222122345777778999999999  99999999988863

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.20  E-value=0.25  Score=38.35  Aligned_cols=60  Identities=10%  Similarity=0.232  Sum_probs=41.0

Q ss_pred             CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092            8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      |.|.-||+.+++..-+....   .+..+=.++-.|..+.+|+.||.++.  +|.++|+.+.++.-
T Consensus       453 G~l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagglVF~G~~Dg~l~A--~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKA--RDSDTGDLLWKFKI  512 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEE--EETTTCCEEEEEEC
T ss_pred             ceEEEEeCCCCceecccCCC---CCCccceeEecCCEEEEECCCCeEEE--EECCCCcEeeEEEC
Confidence            67889999999753322211   12222122334777778999999999  99999999988853

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.94  E-value=0.65  Score=35.61  Aligned_cols=59  Identities=10%  Similarity=0.181  Sum_probs=40.8

Q ss_pred             CeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092            8 RNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         8 g~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      |.+.-||+.+++..-+.... +...  ..|+  -.|..+.+|+.||.++.  +|.++|+.+.++.-
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~g--g~ls--tagglVF~G~~dg~l~A--~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNG--GTLT--TAGNVVFQGTADGRLVA--YHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCC--CEEE--ETTTEEEEECTTSEEEE--EETTTCCEEEEEEC
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCC--ceEE--EcCCEEEEECCCCeEEE--EECCCCcEeEEEEC
Confidence            57888999999753322111 1111  1233  34778888999999999  99999999988863

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.82  E-value=0.2  Score=38.75  Aligned_cols=60  Identities=13%  Similarity=0.359  Sum_probs=39.7

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK   71 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~   71 (147)
                      .|.+.-+|+++++..-+....   .+..+=.++-.+..+.+|+.||.++.  +|.++|+.+.++.
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~---~~~~~g~l~TagglVf~G~~dg~l~A--~Da~tGe~lW~~~  502 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKA--LDNKDGKELWNFK  502 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEE--EETTTCCEEEEEE
T ss_pred             cccEEEeccCCCceeeEcCCC---CCCCcceeEecCCEEEEECCCCeEEE--EECCCCcEEEEEE
Confidence            367888999998753222111   11111111223667778999999999  9999999998875

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.79  E-value=0.28  Score=37.65  Aligned_cols=61  Identities=8%  Similarity=0.134  Sum_probs=40.9

Q ss_pred             CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092            7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC   72 (147)
Q Consensus         7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~   72 (147)
                      .|.+.-+|+.+++..-+....   .+..+=.++-.+..+.+|+.||.++.  +|..+|+.+.++.-
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~---~~~~gg~l~TagglVF~G~~dg~l~A--~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHA--YSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEE--EETTTCCEEEEEEC
T ss_pred             ccceEEEeCCCCeEeeeccCC---CCCCCceeEECCCEEEEECCCCcEEE--EECCCCcEeEEEEC
Confidence            367888999999753222111   12221122233667778999999999  99999999988763

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.03  E-value=2  Score=30.64  Aligned_cols=29  Identities=3%  Similarity=-0.082  Sum_probs=21.5

Q ss_pred             EEEEEecCCCeE-EEeCCCCcEEEeecCCc
Q 032092          113 VIVLFVQIHHTF-ATAGSDGAFNFWDKDSK  141 (147)
Q Consensus       113 ~~~~fspdg~~l-atg~~Dg~i~iWd~~~~  141 (147)
                      +.++++||+++| ++-...+.|+.|+++..
T Consensus       209 NGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         209 NGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            456999999765 55555788999988643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.33  E-value=1.7  Score=31.55  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=23.6

Q ss_pred             ceEEEEEccCCCEEEEE-eeCC----eEEEEeecCCCCcce
Q 032092           32 QMRCVAAFPDQQGFWVG-SIEG----RVGVHHLDDSQQSKN   67 (147)
Q Consensus        32 ~i~~la~spdg~~l~~g-~~dg----~i~i~~~d~~~~~~~   67 (147)
                      .+...++|||++++|.+ +..|    .+++  +|+.+++.+
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v--~Dl~tg~~~  164 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKF--MKVDGAKEL  164 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEE--EETTTTEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEE--eccCcceec
Confidence            35567899999998854 3344    4666  888877654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=86.23  E-value=2.1  Score=29.86  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=16.6

Q ss_pred             EEecCCCeEEEeCCC-CcEEEeecCCc
Q 032092          116 LFVQIHHTFATAGSD-GAFNFWDKDSK  141 (147)
Q Consensus       116 ~fspdg~~latg~~D-g~i~iWd~~~~  141 (147)
                      ++.++|++++.|+.+ .++.+||..+.
T Consensus        82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~  108 (387)
T d1k3ia3          82 SMDGNGQIVVTGGNDAKKTSLYDSSSD  108 (387)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             EEecCCcEEEeecCCCcceeEecCccC
Confidence            566777777766654 36777776544