Citrus Sinensis ID: 032119

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MRPPRGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCSVSHWY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccEEEEEcccccccccccEEEcccccEEEEEEEcccccccEEEEEEcccccccccccccEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccHEEEccEEEccccccEEEEEEccccccccccEEEcccccccEEEEEEcccccEEEEEEccccEEEcccccccEEEEcccccccHHHcccccccEEEEcc
Coil and Loop (DISEMBL)
mrpprggggfrggrdggrggrgggrfggggrggggrggfgfrdegppaeVVEVSSFLhacegdavtkltnekipyfnapiylqnktqigkvdeifgpinesYFSVKMMEGIVATSYslgdkfyidpskllplarflpqpkcsvshwy
Flexible Loop (DISEMBL)
mrpprggggfrggrdggrggrgggrfggggrggggrGGFGFRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPlarflpqpkcsvshwy
Low Complexity Region (SEG)
MRPPrggggfrggrdggrggrgggrfggggrggggrggfgfrdEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCSVSHWY
Disordered region (IsUnstruct)
*************************************************VVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP********
Disordered Region (DISOPRED)
************************************************EVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEG*****YSLGDKFYIDPSKLLPLARFL***********
Disordered Region (DISEMBL)
*********FRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCSVSHWY
Disordered Region (DISPRO)
*******************************************EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCSVSHWY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPPRGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCSVSHWY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q8VZT0	202	Putative H/ACA ribonucleo	yes	no	0.666	0.485	0.867	1e-45
Q9FK53	189	H/ACA ribonucleoprotein c	no	no	0.666	0.518	0.836	1e-43
Q6CJ45	219	H/ACA ribonucleoprotein c	yes	no	0.734	0.493	0.627	2e-34
Q6FSB0	222	H/ACA ribonucleoprotein c	yes	no	0.673	0.445	0.616	9e-33
Q2HH48	210	H/ACA ribonucleoprotein c	N/A	no	0.666	0.466	0.642	3e-32
P28007	205	H/ACA ribonucleoprotein c	yes	no	0.659	0.473	0.628	4e-32
A3GHP2	202	H/ACA ribonucleoprotein c	yes	no	0.659	0.480	0.639	2e-31
Q6BVF9	215	H/ACA ribonucleoprotein c	yes	no	0.659	0.451	0.628	2e-31
P0CN78	203	H/ACA ribonucleoprotein c	yes	no	0.687	0.497	0.617	3e-30
P0CN79	203	H/ACA ribonucleoprotein c	N/A	no	0.687	0.497	0.617	3e-30

>sp|Q8VZT0|NLAL1_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/98 (86%), Positives = 94/98 (95%)

Query: 43  DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
           DEGPP+EVVEV++F+HACEGDAVTKL+ EKIP+FNAPIYL+NKTQIGKVDEIFGPINES 
Sbjct: 51  DEGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESL 110

Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           FS+KMMEGIVATSYS GDKF+IDP KLLPLARFLPQPK
Sbjct: 111 FSIKMMEGIVATSYSPGDKFFIDPYKLLPLARFLPQPK 148

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK53|NLAL2_ARATH H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1

 Score =  175 bits (443), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/98 (83%), Positives = 91/98 (92%)

Query: 43  DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
           DEGPP+EVVEV++FLHACEGDAV KL+N KIP+FNAPIYLQNKTQIG+VDEIFGPINES 
Sbjct: 38  DEGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESL 97

Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           FS+KM EGIVATSYS GDKF+I P KLLPL+RFLPQPK
Sbjct: 98  FSIKMREGIVATSYSQGDKFFISPEKLLPLSRFLPQPK 135

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6CJ45|GAR1_KLULA H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAR1 PE=3 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 85/110 (77%), Gaps = 2/110 (1%)

Query: 35  GRGGFGFR--DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVD 92
            RGGFG R   +GPP  V+E+ +FLH CEGD V +  N KIPYFNAPIYL+NKTQ+GKVD
Sbjct: 18  SRGGFGGRAAPQGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVD 77

Query: 93  EIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCS 142
           EI GP+NE +F+VK  +G+ A S+S GDKFYI P KLLP+ RFLP+PK +
Sbjct: 78  EILGPLNEVFFTVKCSDGVKAESFSEGDKFYIAPDKLLPIERFLPKPKVA 127

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6FSB0|GAR1_CANGA H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GAR1 PE=3 SV=1

 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 78/99 (78%)

Query: 44  EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
           +GPP  V+E+  F+H CEGD V +  N K+PYFNAPIYL+NKTQ+GKVDEI GP+NE YF
Sbjct: 32  QGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYF 91

Query: 104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCS 142
           ++K  EG+ ATS+  GDKFYI P KLLP+ RF+P+PK +
Sbjct: 92  TIKCGEGVQATSFKEGDKFYIAPDKLLPIERFIPKPKVA 130

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q2HH48|GAR1_CHAGB H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=GAR1 PE=3 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 78/98 (79%)

Query: 43  DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
           D GPPA V+E+  F+HACEG+ V + TN K+P+FNAPIYL+NKT +GKVDE+ GPIN+ Y
Sbjct: 30  DMGPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPIYLENKTAVGKVDEVLGPINQVY 89

Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           F++K  EGI ATS+  GDKFYI   KLLPL RFLP+PK
Sbjct: 90  FTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFLPKPK 127

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|P28007|GAR1_YEAST H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAR1 PE=1 SV=1

 Score =  136 bits (343), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 77/97 (79%)

Query: 44  EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
           +GPP  V+E+ +FLH CEGD V +  N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F
Sbjct: 31  QGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 90

Query: 104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           ++K  +G+ ATS+  GDKFYI   KLLP+ RFLP+PK
Sbjct: 91  TIKCGDGVQATSFKEGDKFYIAADKLLPIERFLPKPK 127

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. Essential for growth.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A3GHP2|GAR1_PICST H/ACA ribonucleoprotein complex subunit 1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=GAR1 PE=3 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 77/97 (79%)

Query: 44  EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
           +GPP  V+E+ +F+ ACEGD V +  N KIPYFNAPIYL+NKTQIGKVDEI GP+NE +F
Sbjct: 23  QGPPDTVLEMGAFMQACEGDIVCRSINVKIPYFNAPIYLENKTQIGKVDEILGPLNEVFF 82

Query: 104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           ++K  EG+ A S+  GDKF+I P KLLPL RFLP+PK
Sbjct: 83  TIKPSEGVKADSFKEGDKFFIGPDKLLPLERFLPKPK 119

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (taxid: 322104)

>sp|Q6BVF9|GAR1_DEBHA H/ACA ribonucleoprotein complex subunit 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GAR1 PE=3 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 77/97 (79%)

Query: 44  EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
           +GPP  V+E+ +F+ +CEGD V +  N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F
Sbjct: 23  QGPPDTVLEMGAFMQSCEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPVNEVFF 82

Query: 104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           ++K  EG+ A S+  GDKFYI P KLLPL RFLP+PK
Sbjct: 83  TIKPSEGVQADSFKDGDKFYIGPDKLLPLERFLPKPK 119

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|P0CN78|GAR1_CRYNJ H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GAR1 PE=3 SV=1

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 1/102 (0%)

Query: 42  RDEGPPAEVVEVSSFLHACEGDAVTKLTN-EKIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
           RD GPP  V+E+ SF H  E + +  LT   KIPYFNAPIYLQNKTQIGKVDEI GPINE
Sbjct: 32  RDMGPPDTVLEIGSFQHDVESEMLCSLTAPTKIPYFNAPIYLQNKTQIGKVDEILGPINE 91

Query: 101 SYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCS 142
            YF+VKM +G++A+S+   DK YI   KLLP+ RFLP+PK +
Sbjct: 92  VYFTVKMEQGMLASSFKKEDKVYISGEKLLPIERFLPKPKVA 133

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CN79|GAR1_CRYNB H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=GAR1 PE=3 SV=1

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 1/102 (0%)

Query: 42  RDEGPPAEVVEVSSFLHACEGDAVTKLTN-EKIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
           RD GPP  V+E+ SF H  E + +  LT   KIPYFNAPIYLQNKTQIGKVDEI GPINE
Sbjct: 32  RDMGPPDTVLEIGSFQHDVESEMLCSLTAPTKIPYFNAPIYLQNKTQIGKVDEILGPINE 91

Query: 101 SYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCS 142
            YF+VKM +G++A+S+   DK YI   KLLP+ RFLP+PK +
Sbjct: 92  VYFTVKMEQGMLASSFKKEDKVYISGEKLLPIERFLPKPKVA 133

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
356560951	195	PREDICTED: putative H/ACA ribonucleoprot	0.680	0.512	0.89	3e-47
413925372	190	putative H/ACA ribonucleoprotein complex	0.666	0.515	0.908	4e-47
449459600	194	PREDICTED: putative H/ACA ribonucleoprot	0.659	0.5	0.927	6e-47
195645644	191	h/ACA ribonucleoprotein complex subunit	0.666	0.513	0.908	6e-47
212724098	191	uncharacterized protein LOC100193822 [Ze	0.666	0.513	0.908	6e-47
195628096	196	h/ACA ribonucleoprotein complex subunit	0.666	0.5	0.908	1e-46
224125874	204	predicted protein [Populus trichocarpa]	0.659	0.475	0.927	2e-46
115486013	196	Os11g0579800 [Oryza sativa Japonica Grou	0.666	0.5	0.897	2e-46
125534871	196	hypothetical protein OsI_36586 [Oryza sa	0.666	0.5	0.897	2e-46
224144798	188	predicted protein [Populus trichocarpa]	0.666	0.521	0.908	3e-46

>gi|356560951|ref|XP_003548749.1| PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1-like [Glycine max]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/100 (89%), Positives = 97/100 (97%)

Query: 41  FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
           +RDEGPP+EVVEVSSF+HACEGDAVTKLTNEK+P+FNAPIYL+N TQIGKVDEIFGPINE
Sbjct: 42  YRDEGPPSEVVEVSSFMHACEGDAVTKLTNEKVPFFNAPIYLKNMTQIGKVDEIFGPINE 101

Query: 101 SYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           +YFS+KMMEGIVATSYS GDKFYIDP KLLPLARFLPQPK
Sbjct: 102 AYFSIKMMEGIVATSYSSGDKFYIDPRKLLPLARFLPQPK 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413925372|gb|AFW65304.1| putative H/ACA ribonucleoprotein complex subunit family protein [Zea mays]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/98 (90%), Positives = 96/98 (97%)

Query: 43  DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
           DEGPPAEVVEVS+FLHACEG+AVTKLTNEK+PYFNAPIYLQNKTQIGKV+EIFGPINESY
Sbjct: 44  DEGPPAEVVEVSTFLHACEGEAVTKLTNEKVPYFNAPIYLQNKTQIGKVEEIFGPINESY 103

Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           FSVKMMEGI+ATSY+ GDKFYIDP KLLPL+RFLPQPK
Sbjct: 104 FSVKMMEGIIATSYNEGDKFYIDPMKLLPLSRFLPQPK 141

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459600|ref|XP_004147534.1| PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1-like [Cucumis sativus] gi|449484903|ref|XP_004157013.1| PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1-like [Cucumis sativus]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/97 (92%), Positives = 96/97 (98%)

Query: 44  EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
           EGPP+EVVEVS+FLHACEGDAVTKLTNEKIP+FNAPIYLQNKTQIGKVDEIFGPINESYF
Sbjct: 43  EGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYF 102

Query: 104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           S+KMMEGIVATSY+ GDKFYIDP+KLLPLARFLPQPK
Sbjct: 103 SIKMMEGIVATSYASGDKFYIDPAKLLPLARFLPQPK 139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195645644|gb|ACG42290.1| h/ACA ribonucleoprotein complex subunit 1-like protein 1 [Zea mays]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 89/98 (90%), Positives = 95/98 (96%)

Query: 43  DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
           DEGPPAEVVEVS+FLH+CEGDAVTKLTNEK+PYFNAPIYLQNKTQ+GKVDEIFGPINESY
Sbjct: 41  DEGPPAEVVEVSTFLHSCEGDAVTKLTNEKVPYFNAPIYLQNKTQVGKVDEIFGPINESY 100

Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           FSVKMMEGI+ATSY  GDKFYIDP KLLPL+RFLPQPK
Sbjct: 101 FSVKMMEGIIATSYKEGDKFYIDPMKLLPLSRFLPQPK 138

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212724098|ref|NP_001132376.1| uncharacterized protein LOC100193822 [Zea mays] gi|194694218|gb|ACF81193.1| unknown [Zea mays]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 89/98 (90%), Positives = 95/98 (96%)

Query: 43  DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
           DEGPPAEVVEVS+F+HACEGDAVTKLTNEK+PYFNAPIYLQNKTQ+GKVDEIFGPINESY
Sbjct: 41  DEGPPAEVVEVSTFVHACEGDAVTKLTNEKVPYFNAPIYLQNKTQVGKVDEIFGPINESY 100

Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           FSVKMMEGI+ATSY  GDKFYIDP KLLPL+RFLPQPK
Sbjct: 101 FSVKMMEGIIATSYKEGDKFYIDPMKLLPLSRFLPQPK 138

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195628096|gb|ACG35878.1| h/ACA ribonucleoprotein complex subunit 1-like protein 1 [Zea mays]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/98 (90%), Positives = 96/98 (97%)

Query: 43  DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
           DEGPPAEVVEVS+FLHACEG+AVTKLTNEK+PYFNAPIYLQNKTQIGKV+EIFGPINESY
Sbjct: 44  DEGPPAEVVEVSTFLHACEGEAVTKLTNEKVPYFNAPIYLQNKTQIGKVEEIFGPINESY 103

Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           FSVKMMEGI+ATSY+ GDKFYIDP KLLPL+RFLPQPK
Sbjct: 104 FSVKMMEGIIATSYNEGDKFYIDPMKLLPLSRFLPQPK 141

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125874|ref|XP_002319696.1| predicted protein [Populus trichocarpa] gi|222858072|gb|EEE95619.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/97 (92%), Positives = 95/97 (97%)

Query: 44  EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
           EGPP+EV+EVSSFLHACEGDAVTKLTNEKIPYFNAPI+LQNKTQIGKVDEIFGPINESYF
Sbjct: 55  EGPPSEVIEVSSFLHACEGDAVTKLTNEKIPYFNAPIFLQNKTQIGKVDEIFGPINESYF 114

Query: 104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           S+KMMEGIVATSY+ GDKFYIDPSKLLPLARFL QPK
Sbjct: 115 SIKMMEGIVATSYAPGDKFYIDPSKLLPLARFLTQPK 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115486013|ref|NP_001068150.1| Os11g0579800 [Oryza sativa Japonica Group] gi|77551701|gb|ABA94498.1| H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed [Oryza sativa Japonica Group] gi|113645372|dbj|BAF28513.1| Os11g0579800 [Oryza sativa Japonica Group] gi|125577612|gb|EAZ18834.1| hypothetical protein OsJ_34372 [Oryza sativa Japonica Group] gi|215768512|dbj|BAH00741.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/98 (89%), Positives = 95/98 (96%)

Query: 43  DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
           DEGPPAEVVEVS+F+HACEGDAVTKLTNEK+PYFNAPIYLQNKTQIGKVDEIFGPINES 
Sbjct: 46  DEGPPAEVVEVSTFMHACEGDAVTKLTNEKVPYFNAPIYLQNKTQIGKVDEIFGPINESL 105

Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           FS+KM+EGI+ATSYS GDKFYIDP KLLPL+RFLPQPK
Sbjct: 106 FSIKMLEGIIATSYSEGDKFYIDPMKLLPLSRFLPQPK 143

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125534871|gb|EAY81419.1| hypothetical protein OsI_36586 [Oryza sativa Indica Group]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/98 (89%), Positives = 95/98 (96%)

Query: 43  DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
           DEGPPAEVVEVS+F+HACEGDAVTKLTNEK+PYFNAPIYLQNKTQIGKVDEIFGPINES 
Sbjct: 46  DEGPPAEVVEVSTFMHACEGDAVTKLTNEKVPYFNAPIYLQNKTQIGKVDEIFGPINESL 105

Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           FS+KM+EGI+ATSYS GDKFYIDP KLLPL+RFLPQPK
Sbjct: 106 FSIKMLEGIIATSYSEGDKFYIDPMKLLPLSRFLPQPK 143

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144798|ref|XP_002325418.1| predicted protein [Populus trichocarpa] gi|222862293|gb|EEE99799.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/98 (90%), Positives = 96/98 (97%)

Query: 43  DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
           DEGPP+EVVEVSSFLHACEGDAVTKLTNEKIPYFNAPI+LQNKTQIGKVDEIFGPINES+
Sbjct: 41  DEGPPSEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIFLQNKTQIGKVDEIFGPINESH 100

Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           FS+KMMEGIVATSY+ G+KFYIDP+KLLPLARFL QPK
Sbjct: 101 FSIKMMEGIVATSYAPGEKFYIDPNKLLPLARFLSQPK 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2079349	202	AT3G03920 "AT3G03920" [Arabido	0.659	0.480	0.865	1.9e-42
TAIR|locus:2172329	189	AT5G18180 "AT5G18180" [Arabido	0.659	0.513	0.835	1.2e-40
SGD|S000001131	205	GAR1 "Protein component of the	0.659	0.473	0.628	2.6e-31
CGD|CAL0002072	186	GAR1 [Candida albicans (taxid:	0.646	0.510	0.652	3.3e-31
UNIPROTKB|Q59TT0	186	GAR1 "Putative uncharacterized	0.646	0.510	0.652	3.3e-31
POMBASE|SPBC20F10.01	194	gar1 "snoRNP pseudouridylase b	0.653	0.494	0.614	4.2e-31
ASPGD|ASPL0000026673	197	AN10712 [Emericella nidulans (	0.653	0.487	0.625	5.4e-31
UNIPROTKB|F1MRF7	210	GAR1 "Uncharacterized protein"	0.653	0.457	0.602	5e-28
UNIPROTKB|I3LVQ6	210	LOC100516629 "Uncharacterized	0.653	0.457	0.602	5e-28
RGD|1563995	226	Gar1 "GAR1 ribonucleoprotein h	0.653	0.424	0.602	6.4e-28

TAIR|locus:2079349 AT3G03920 "AT3G03920" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 84/97 (86%), Positives = 93/97 (95%)

Query:    44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
             EGPP+EVVEV++F+HACEGDAVTKL+ EKIP+FNAPIYL+NKTQIGKVDEIFGPINES F
Sbjct:    52 EGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLF 111

Query:   104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
             S+KMMEGIVATSYS GDKF+IDP KLLPLARFLPQPK
Sbjct:   112 SIKMMEGIVATSYSPGDKFFIDPYKLLPLARFLPQPK 148

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009982 "pseudouridine synthase activity" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2172329 AT5G18180 "AT5G18180" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 81/97 (83%), Positives = 90/97 (92%)

Query:    44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
             EGPP+EVVEV++FLHACEGDAV KL+N KIP+FNAPIYLQNKTQIG+VDEIFGPINES F
Sbjct:    39 EGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLF 98

Query:   104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
             S+KM EGIVATSYS GDKF+I P KLLPL+RFLPQPK
Sbjct:    99 SIKMREGIVATSYSQGDKFFISPEKLLPLSRFLPQPK 135

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009982 "pseudouridine synthase activity" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0031429 "box H/ACA snoRNP complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

SGD|S000001131 GAR1 "Protein component of the H/ACA snoRNP pseudouridylase complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 61/97 (62%), Positives = 77/97 (79%)

Query:    44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
             +GPP  V+E+ +FLH CEGD V +  N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F
Sbjct:    31 QGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 90

Query:   104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
             ++K  +G+ ATS+  GDKFYI   KLLP+ RFLP+PK
Sbjct:    91 TIKCGDGVQATSFKEGDKFYIAADKLLPIERFLPKPK 127

GO:0006364 "rRNA processing" evidence=IEA;TAS

GO:0034513 "box H/ACA snoRNA binding" evidence=IPI

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=IPI

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA;IDA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0031429 "box H/ACA snoRNP complex" evidence=IEA;IPI

GO:0030515 "snoRNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0009982 "pseudouridine synthase activity" evidence=IEA

CGD|CAL0002072 GAR1 [Candida albicans (taxid:5476)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/95 (65%), Positives = 75/95 (78%)

Query:    45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFS 104
             GPP  V+E+ SF+ ACEGD V +  N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F+
Sbjct:    22 GPPDTVLEMGSFMQACEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFT 81

Query:   105 VKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP 139
             +K  EG+ A S+  GDKFYI P KLLPL RFLP+P
Sbjct:    82 IKPSEGVKAESFKEGDKFYIGPDKLLPLERFLPKP 116

GO:0035690 "cellular response to drug" evidence=IMP

GO:0031429 "box H/ACA snoRNP complex" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0031118 "rRNA pseudouridine synthesis" evidence=IEA

GO:0034513 "box H/ACA snoRNA binding" evidence=IEA

UNIPROTKB|Q59TT0 GAR1 "Putative uncharacterized protein GAR1" [Candida albicans SC5314 (taxid:237561)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/95 (65%), Positives = 75/95 (78%)

Query:    45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFS 104
             GPP  V+E+ SF+ ACEGD V +  N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F+
Sbjct:    22 GPPDTVLEMGSFMQACEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFT 81

Query:   105 VKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP 139
             +K  EG+ A S+  GDKFYI P KLLPL RFLP+P
Sbjct:    82 IKPSEGVKAESFKEGDKFYIGPDKLLPLERFLPKP 116

GO:0035690 "cellular response to drug" evidence=IMP

POMBASE|SPBC20F10.01 gar1 "snoRNP pseudouridylase box H/ACA snoRNP complex protein Gar1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 59/96 (61%), Positives = 79/96 (82%)

Query:    45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFS 104
             GPP +V+E+  F+H CEG+ V + TN KIPYFNAPIYL+NK+QIGK+DE+FGP+N+ YF+
Sbjct:    25 GPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYFT 84

Query:   105 VKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
             VK  EGIV++S+ +GDK Y+   KL+PL RFLP+PK
Sbjct:    85 VKPSEGIVSSSFKVGDKVYLSGDKLIPLDRFLPKPK 120

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006364 "rRNA processing" evidence=IGI

GO:0009982 "pseudouridine synthase activity" evidence=IEA

GO:0019843 "rRNA binding" evidence=IC

GO:0031118 "rRNA pseudouridine synthesis" evidence=IGI

GO:0031120 "snRNA pseudouridine synthesis" evidence=IGI

GO:0031429 "box H/ACA snoRNP complex" evidence=IGI

GO:0034513 "box H/ACA snoRNA binding" evidence=ISO

ASPGD|ASPL0000026673 AN10712 [Emericella nidulans (taxid:162425)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 60/96 (62%), Positives = 77/96 (80%)

Query:    45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFS 104
             GPP +V+E+ +F+HACEG+ V +  N KIPYFNAPIYL+NKT IGK+DE+ GPIN+ YF+
Sbjct:    33 GPPDQVLEMGTFMHACEGEMVCESINPKIPYFNAPIYLENKTPIGKIDEVLGPINQVYFT 92

Query:   105 VKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
             +K  EGIVATS+  GDK YI   KLLP+ +FLP+PK
Sbjct:    93 IKPQEGIVATSFKPGDKVYIGGDKLLPIEKFLPKPK 128

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0031429 "box H/ACA snoRNP complex" evidence=IEA

GO:0009982 "pseudouridine synthase activity" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

UNIPROTKB|F1MRF7 GAR1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 59/98 (60%), Positives = 73/98 (74%)

Query:    44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINES 101
             +GPP +VV +  FLH CE D V K T +  K+PYFNAP+YL+NK QIGKVDEIFG + + 
Sbjct:    59 QGPPEQVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDF 118

Query:   102 YFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP 139
             YFSVK+ E + A+S+    KFYIDP KLLPL RFLP+P
Sbjct:   119 YFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRP 156

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0031429 "box H/ACA snoRNP complex" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0009982 "pseudouridine synthase activity" evidence=IEA

UNIPROTKB|I3LVQ6 LOC100516629 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 59/98 (60%), Positives = 73/98 (74%)

Query:    44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINES 101
             +GPP +VV +  FLH CE D V K T +  K+PYFNAP+YL+NK QIGKVDEIFG + + 
Sbjct:    59 QGPPEQVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDF 118

Query:   102 YFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP 139
             YFSVK+ E + A+S+    KFYIDP KLLPL RFLP+P
Sbjct:   119 YFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRP 156

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0031429 "box H/ACA snoRNP complex" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0009982 "pseudouridine synthase activity" evidence=IEA

RGD|1563995 Gar1 "GAR1 ribonucleoprotein homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 59/98 (60%), Positives = 72/98 (73%)

Query:    44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINES 101
             +GPP  VV +  F+H CE D V K T E  K+PYFNAP+YL+NK QIGKVDEIFG + + 
Sbjct:    66 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRDF 125

Query:   102 YFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP 139
             YFSVK+ E + A+S+    KFYIDP KLLPL RFLP+P
Sbjct:   126 YFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRP 163

GO:0006364 "rRNA processing" evidence=IEA

GO:0009982 "pseudouridine synthase activity" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0031429 "box H/ACA snoRNP complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZT0	NLAL1_ARATH	No assigned EC number	0.8673	0.6666	0.4851	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	OsI_36586	Os11g0579800 (196 aa)
		(Oryza sativa Indica)
Predicted Functional Partners:
	OsI_09490	Os02g0821800 (306 aa)				•	•		•		0.961
	OsI_27281	Os07g0670600 (188 aa)				•			•		0.835
	OsI_01079	Os01g0238900 (452 aa)				•	•		•		0.808
	OsI_11751	Os03g0370500 (535 aa)				•	•		•		0.793
	OsI_07871	Os02g0591800 (331 aa)				•	•				0.793
	OsI_27012	Os07g0636000 (600 aa)				•	•		•		0.768
	OsI_06808	Os02g0290400 (284 aa)				•					0.729
	OsI_25805	Putative uncharacterized protein (648 aa)				•					0.725
	OsI_04037	Os03g0115200 (206 aa)				•					0.723
	OsI_11747	Putative uncharacterized protein (563 aa)				•	•		•		0.718

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
pfam04410	154	pfam04410, Gar1, Gar1/Naf1 RNA binding region	6e-34
COG3277	98	COG3277, GAR1, RNA-binding protein involved in rRN	2e-25
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	5e-08
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-07
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	1e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	3e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	4e-06
PRK13149	73	PRK13149, PRK13149, H/ACA RNA-protein complex comp	9e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	1e-05
COG1512	271	COG1512, COG1512, Beta-propeller domains of methan	3e-04
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	4e-04
pfam05918	543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	5e-04
pfam13865	76	pfam13865, FoP_duplication, C-terminal duplication	5e-04
PRK11634	629	PRK11634, PRK11634, ATP-dependent RNA helicase Dea	5e-04
pfam13865	76	pfam13865, FoP_duplication, C-terminal duplication	9e-04
PRK07772	186	PRK07772, PRK07772, single-stranded DNA-binding pr	0.002
PRK04537	572	PRK04537, PRK04537, ATP-dependent RNA helicase Rhl	0.003
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	0.004

>gnl|CDD|190975 pfam04410, Gar1, Gar1/Naf1 RNA binding region

 Score =  115 bits (291), Expect = 6e-34
 Identities = 51/116 (43%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 27  GGGGRGGGGRGGFGFRDEGPPAEVVEVSSFLHACEGDAVTKLTN-EKIPYFNAPIYLQNK 85
             GG   G  GG      GPP E+ E+ +     E   V K TN EK+  F + + L++K
Sbjct: 1   NEGGGEEGPPGGPPDYTIGPPTEIEELGTISSVVENQVVIKSTNSEKVLDFGSILCLEDK 60

Query: 86  TQIGKVDEIFGPINESYFSVK-MMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
           T IGKVDEIFGP+N  ++SVK   EGI A S  +GDK Y  P    P  RFL QP 
Sbjct: 61  TVIGKVDEIFGPVNNPFYSVKFSSEGIQAKSLKVGDKVYYVPD---PAQRFLTQPL 113

Gar1 is a small nucleolar RNP that is required for pre-mRNA processing and pseudouridylation. It is co-immunoprecipitated with the H/ACA families of snoRNAs. This family represents the conserved central region of Gar1. This region is necessary and sufficient for normal cell growth, and specifically binds two snoRNAs snR10 and snR30. This region is also necessary for nucleolar targeting, and it is thought that the protein is co-transported to the nucleolus as part of a nucleoprotein complex. In humans, Gar1 is also component of telomerase in vivo. Naf1 is an essentail protein that plays a role in ribosome biogenesis, modification of spliceosomal small nuclear RNAs and telomere synthesis, and is homologous to Gar1. Length = 154

>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]

 Score = 92.4 bits (230), Expect = 2e-25
 Identities = 35/91 (38%), Positives = 49/91 (53%)

Query: 50  VVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMME 109
           +  +   LH C    V    N++IP  NAP+Y  N  +IGKV ++FGP++E Y  VK  +
Sbjct: 1   MKRLGKVLHVCGTGMVIVRDNDRIPPLNAPVYDANLKRIGKVVDVFGPVDEPYILVKPDD 60

Query: 110 GIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
             V     +GD  YI P KL+   R LP+ K
Sbjct: 61  RDVKLESLVGDTLYIPPDKLIRKKRKLPRKK 91

Length = 98

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 26/36 (72%), Positives = 26/36 (72%)

Query: 5  RGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFG 40
            GGGF GGR GGRGG GGG  GGGGRGGG  GG G
Sbjct: 1  GMGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRG 36

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 6  GGGGFRGGRDGGRGGRGGGRFGGGGRG-GGGRGGFGFRDEGPPAEVV 51
          GG G  GG   G GGRGGGR GG GRG GGG GG G    G P +V+
Sbjct: 12 GGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGKVI 58

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 25/36 (69%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 4  PRGGGGFRGGRDGGRG-GRGGGRFGGGGRGGGGRGG 38
           RGGGG  GGR GGRG GRGGG  G GG GGGG G 
Sbjct: 21 GRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 23/48 (47%), Positives = 24/48 (50%)

Query: 5  RGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFRDEGPPAEVVE 52
            GGG  GGR GG  G G G   G GRGGGG G  G    GP   +V 
Sbjct: 13 GRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGKVIVV 60

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 22/39 (56%), Positives = 22/39 (56%)

Query: 4  PRGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFR 42
            GGG   GGR GGRGG  G   GGGG G GG GG G  
Sbjct: 17 GGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPG 55

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 23/37 (62%), Positives = 23/37 (62%)

Query: 4  PRGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFG 40
            GGGG   G  G  GGRGGGR  G G GGGGRGG G
Sbjct: 14 RGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGG 50

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 19/34 (55%), Positives = 19/34 (55%)

Query: 9  GFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFR 42
          G  GG  GGRGG  GG  GGG  GGG  GG G  
Sbjct: 1  GMGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGG 34

Length = 293

>gnl|CDD|183872 PRK13149, PRK13149, H/ACA RNA-protein complex component Gar1; Reviewed

 Score = 41.0 bits (97), Expect = 9e-06
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 72  KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYID 125
           K P   + +Y +   +IGKV ++FGP+ E Y  VK  +        +G+K Y+ 
Sbjct: 22  KQPPIGSVVYDKKLKKIGKVVDVFGPVKEPYVLVKPDKKDPPE--LVGEKLYVR 73

Length = 73

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 22/41 (53%), Positives = 22/41 (53%)

Query: 2  RPPRGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFR 42
          R   GGGG  GG  GG  G G GR  GGG GG G GG G  
Sbjct: 14 RGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGP 54

Length = 293

>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 2   RPPRGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGF 39
           R   G GG   G  GG    GG   GGG  GGGG  G 
Sbjct: 235 RRSSGSGG--SGGSGGGSSGGGFSGGGGSSGGGGASGS 270

Length = 271

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 20/40 (50%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 3   PPRGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFR 42
                 G  GG  GG GG GGG  GGGG GGGG   F  R
Sbjct: 72  SASAISGGGGGGGGGFGGFGGG--GGGGGGGGGGWRFWLR 109

Length = 796

>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 3   PPRGGGGFR-GGRDGGRG-GRGGGRFGGGGRGGGGRGGF 39
              G G  + G   GGRG  RG GR GGGGRG G   GF
Sbjct: 504 NKSGEGISKVGQSYGGRGRTRGRGRGGGGGRGRGYNRGF 542

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

>gnl|CDD|222425 pfam13865, FoP_duplication, C-terminal duplication domain of Friend of PRMT1

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 17/41 (41%), Positives = 19/41 (46%)

Query: 8  GGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFRDEGPPA 48
          GG +G R G    RG G   G  RG GGR G G   +  P 
Sbjct: 2  GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKPKPK 42

Fop, or Friend of Prmt1, proteins are conserved from fungi and plants to vertebrates. There is little that is actually conserved except for this C-terminal LDXXLDAYM region where X is any amino acid). The Fop proteins themselves are nuclear proteins localised to regions with low levels of DAPI, with a punctate/speckle-like distribution. Fop is a chromatin-associated protein and it colocalises with facultative heterochromatin. It is is critical for oestrogen-dependent gene activation. Length = 76

>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 5   RGGGGFRGG--RDGGRGG----RGGGRFGGGGRGGGGRGGFGFRDEGPPA 48
           RGGG   GG  R+GGR      R GGR  G    G  R G   R +    
Sbjct: 572 RGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTG 621

Length = 629

>gnl|CDD|222425 pfam13865, FoP_duplication, C-terminal duplication domain of Friend of PRMT1

 Score = 35.9 bits (83), Expect = 9e-04
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 2  RPPRGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGR 36
          R    GG FR    G R GR  GR G  G+GG  +
Sbjct: 4  RKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAK 38

Fop, or Friend of Prmt1, proteins are conserved from fungi and plants to vertebrates. There is little that is actually conserved except for this C-terminal LDXXLDAYM region where X is any amino acid). The Fop proteins themselves are nuclear proteins localised to regions with low levels of DAPI, with a punctate/speckle-like distribution. Fop is a chromatin-associated protein and it colocalises with facultative heterochromatin. It is is critical for oestrogen-dependent gene activation. Length = 76

>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 24/48 (50%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MRPPRGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFRDEGPPA 48
            R  RGGGG  GG  GG GG GGG  GGGG GGGG    G   +    
Sbjct: 118 TRASRGGGGGGGG--GGFGGGGGGSGGGGGGGGGGGAPGGGGAQASAP 163

Length = 186

>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 21  RGGGRFGGGGRGGGGRGGFGFRDEGPPAE 49
           RGGGR G GG    G  G G R +G  A+
Sbjct: 432 RGGGRSGPGGGSRSGSVGGGGRRDGAGAD 460

Length = 572

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 17/41 (41%), Positives = 17/41 (41%)

Query: 4   PRGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFRDE 44
                        G GG GGG FGG G GGGG GG G    
Sbjct: 65  NGAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWR 105

Length = 796

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
KOG3262	215	consensus H/ACA small nucleolar RNP component GAR1	100.0
PRK13149	73	H/ACA RNA-protein complex component Gar1; Reviewed	99.93
COG3277	98	GAR1 RNA-binding protein involved in rRNA processi	99.92
PF04410	154	Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR0	99.91
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	99.64
PTZ00146	293	fibrillarin; Provisional	99.51
KOG2236	483	consensus Uncharacterized conserved protein [Funct	98.49
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.42
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.6
PTZ00146	293	fibrillarin; Provisional	93.35
KOG3262	215	consensus H/ACA small nucleolar RNP component GAR1	80.46

>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.3e-55  Score=350.34  Aligned_cols=139  Identities=66%  Similarity=1.136  Sum_probs=117.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCC-CCCCCCCCCCceEEecceeeeeeCCeEEEeccCCCcCCC
Q 032119            1 MRPPRGGGGFRGGRDGGRGGRGGG---RFGGGGRGGGGRG-GFGFRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYF   76 (147)
Q Consensus         1 ~~~~~~~~~~~~~~~g~~g~~~~~---~~~gg~~ggrgg~-~~g~~~~Gpp~~vielG~f~H~~eg~lV~K~t~~~VPyf   76 (147)
                      |+||||++++++++ +-|++++++   .|+++...||+++ .++++|++||++|+|||+|+|.||++||||+|+++||||
T Consensus         1 ~~~~rgggg~~g~~-gfRgg~ggg~~gg~rgg~g~grgg~~~~~~~d~gpp~evvelg~flh~Cegd~Vck~~~~kIPyf   79 (215)
T KOG3262|consen    1 GGGPRGGGGGGGGG-GFRGGGGGGRGGGFRGGNGFGRGGRGGRGFQDQGPPEEVVELGKFLHMCEGDLVCKLTNKKIPYF   79 (215)
T ss_pred             CCCCcCCCCCCCCC-CcccCCCCCCCCCcccCcccccCCcccCCcccCCCchhhhhhhhhhhhcCCceEEeeccccCCCC
Confidence            78899987776665 334433322   2333322234432 234679999999999999999999999999999999999


Q ss_pred             CCceeeccceeecccccccCcceeccEEEEecCcccccccccCCEEEecCCCeeecccccCCCC
Q 032119           77 NAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK  140 (147)
Q Consensus        77 Na~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~sfk~gdkiyI~p~KlLpl~rFlp~p~  140 (147)
                      |||||+|||+|||||||||||++|++|||||+++|+|+|||++|+|||||+|||||+||||+|.
T Consensus        80 NAPIylenk~qIGKVDEIfG~i~d~~fsIK~~dgv~assfk~g~k~fi~p~KllPl~RFLP~p~  143 (215)
T KOG3262|consen   80 NAPIYLENKEQIGKVDEIFGPINDVHFSIKPSDGVQASSFKPGDKLFIDPDKLLPLDRFLPQPV  143 (215)
T ss_pred             CCceeecchhhhcchhhhcccccccEEEEecCCCceeecccCCCeEEecccccCcHhhcCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999984

>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed

Probab=99.93  E-value=4e-26  Score=158.70  Aligned_cols=72  Identities=29%  Similarity=0.560  Sum_probs=68.7

Q ss_pred             EEecceeeeee-CCeEEEeccCCCcCCCCCceeeccceeecccccccCcceeccEEEEecCcccccccccCCEEEec
Q 032119           50 VVEVSSFLHAC-EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYID  125 (147)
Q Consensus        50 vielG~f~H~~-eg~lV~K~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~sfk~gdkiyI~  125 (147)
                      |.++|+|+|.| ++++|||+  +++|+||++||+||+++||||+|||||++++||+||+++++.++  +++|++||.
T Consensus         1 Mk~~G~~~h~~~~g~lI~~~--~~~P~~n~~V~~~~~~~IGkV~dIfGPV~~pY~~Vk~~~~~~~~--~~g~k~yi~   73 (73)
T PRK13149          1 MKRLGKVLHYAPKGKLIIRL--DKQPPIGSVVYDKKLKKIGKVVDVFGPVKEPYVLVKPDKKDPPE--LVGEKLYVR   73 (73)
T ss_pred             CcEeEEEEEEcCCCCEEEEc--CCCCCCCCEeECCCCCEeEEEEEEECCCCCcEEEEEeCCCCCcc--ccCCEEEeC
Confidence            57899999999 89999999  68999999999999999999999999999999999999999997  889999984

>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=6.6e-26  Score=166.12  Aligned_cols=92  Identities=38%  Similarity=0.632  Sum_probs=87.8

Q ss_pred             EEecceeeeeeCCeEEEeccCCCcCCCCCceeeccceeecccccccCcceeccEEEEecCcccccccccCCEEEecCCCe
Q 032119           50 VVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKL  129 (147)
Q Consensus        50 vielG~f~H~~eg~lV~K~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~sfk~gdkiyI~p~Kl  129 (147)
                      |++||+|+|.|+..+||..++..+|++|++||+++.++||+|+|||||++++|+.||+++.+...++.++|++||.++|+
T Consensus         1 m~~lG~vlh~~~~g~vi~~~~~~iP~l~~~V~~~~~k~IG~V~dVfGPv~~PY~~Vkp~~~~~~~~~~vg~~lYi~~~k~   80 (98)
T COG3277           1 MKRLGKVLHVCGTGMVIVRDNDRIPPLNAPVYDANLKRIGKVVDVFGPVDEPYILVKPDDRDVKLESLVGDTLYIPPDKL   80 (98)
T ss_pred             CccceeEEEecCCceEEEeCCCCCCCCCCeeEecCCCEEEEEEEEEccCCCCEEEEeccccccccccccceEEEeccccc
Confidence            47899999999999999988789999999999999999999999999999999999999999888899999999999999


Q ss_pred             eecccccCCCCC
Q 032119          130 LPLARFLPQPKC  141 (147)
Q Consensus       130 Lpl~rFlp~p~~  141 (147)
                      ++.+||+|+++.
T Consensus        81 ~~~~r~~~~~k~   92 (98)
T COG3277          81 IRKKRKLPRKKR   92 (98)
T ss_pred             CcccccCccccc
Confidence            999999999885

>PF04410 Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR007504 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs

Probab=99.91  E-value=5.5e-25  Score=170.64  Aligned_cols=99  Identities=43%  Similarity=0.748  Sum_probs=82.2

Q ss_pred             CCCCCCCceEEecceeeeeeCCeEEEeccCC-CcCCCCCceeeccceeecccccccCcceeccEEEE--ecCcccccccc
Q 032119           41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNE-KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVK--MMEGIVATSYS  117 (147)
Q Consensus        41 ~~~~Gpp~~vielG~f~H~~eg~lV~K~t~~-~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvK--l~~gI~a~sfk  117 (147)
                      ..+.+|+.++++||+|+|.|++.+|||++.+ .||++|+.||+|+++.||+|+|||||++++||+||  +++.+.+.+++
T Consensus        14 ~~~~~~~~~i~~lG~v~~i~~~~vVvk~~~~~~vl~~~s~v~~edr~~iG~V~eiFGpV~~P~y~Vr~~~~~~~~~~~~~   93 (154)
T PF04410_consen   14 DVEIGPPEEIKPLGTVSHIVENLVVVKSTPSKQVLDFGSVVCLEDRTKIGKVDEIFGPVNNPYYSVRFNSSEGIKAKSLK   93 (154)
T ss_dssp             T-B--TTSSEEEEEEEEEEETTEEEEEE-SS-CEEBTT-EEEETTSBEEEEEEEEESESSS-EEEEE-SCHHHHHHHCCC
T ss_pred             CcccCCCceEEEeeeEEEEeCCcEEEEeCCCCcCCCCCCEEECCCCCEeEEEeeEeCCCCceEEEEEeCCcccccccccc
Confidence            4577899999999999999999999999877 89999999999999999999999999999999999  88999999999


Q ss_pred             cCCEEEecCCCeeecccccCCCCCC
Q 032119          118 LGDKFYIDPSKLLPLARFLPQPKCS  142 (147)
Q Consensus       118 ~gdkiyI~p~KlLpl~rFlp~p~~~  142 (147)
                      ++++||+++.   |+++|||+|+.+
T Consensus        94 ~g~~vy~~~~---~~~~~~~~~~~~  115 (154)
T PF04410_consen   94 VGDKVYYDPD---PTSRFLPEPLKR  115 (154)
T ss_dssp             TTSEEEEECC----GGGG-------
T ss_pred             ccceEEECCC---chheeccccccc
Confidence            9999999998   999999988754

More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. This entry represents Gar1 and Naf1. Naf1 is an RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex, disappearing during maturation of the complex being replaced by GAR1 to yield mature H/ACA snoRNPs complex. Naf1 reveals a striking structural homology with the core domain of archaeal Gar1 [].; GO: 0030515 snoRNA binding, 0031120 snRNA pseudouridine synthesis, 0042254 ribosome biogenesis; PDB: 2EY4_C 3MQK_C 2RFK_C 2HVY_B 3HAY_B 3U28_C 3UAI_C 2EQN_A 2V3M_F.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=99.64  E-value=4.2e-16  Score=131.58  Aligned_cols=76  Identities=26%  Similarity=0.423  Sum_probs=68.2

Q ss_pred             CCCCceEEecceeeeeeCCeEEEe------ccCCCcCCCCCceeeccceeecccccccCcceec----cEEEEecCcccc
Q 032119           44 EGPPAEVVEVSSFLHACEGDAVTK------LTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINES----YFSVKMMEGIVA  113 (147)
Q Consensus        44 ~Gpp~~vielG~f~H~~eg~lV~K------~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~----yfsvKl~~gI~a  113 (147)
                      .+..+.++|+    |+|.+++|+|      +|+|+||  +++||+|++..|..-|+    +.||    +|++||+++|..
T Consensus        78 ~gG~~v~vEP----HRh~GVfi~rgkeDaLvTkNlvp--ge~vYgEkRisv~~~~~----kvEyRVWnPfrSKLAA~I~g  147 (317)
T KOG1596|consen   78 KGGSKVLVEP----HRHAGVFIARGKEDALVTKNLVP--GESVYGEKRISVENEDG----KVEYRVWNPFRSKLAAGILG  147 (317)
T ss_pred             cCCceEEecc----ccccceEEEcCchhheeecccCC--cccccCceEEEeecCCC----cEEEEEeChHHHHHHHHhhc
Confidence            3467788887    9999999999      5999999  99999999999866653    8888    999999999999


Q ss_pred             cccccCCEEEecCC-Ceeecc
Q 032119          114 TSYSLGDKFYIDPS-KLLPLA  133 (147)
Q Consensus       114 ~sfk~gdkiyI~p~-KlLpl~  133 (147)
                      .    .|.|||.|+ |+|||-
T Consensus       148 G----vdnihikpGsKVLYLG  164 (317)
T KOG1596|consen  148 G----VDNIHIKPGSKVLYLG  164 (317)
T ss_pred             C----ccceeecCCceEEEee
Confidence            9    999999999 999985

>PTZ00146 fibrillarin; Provisional

Probab=99.51  E-value=4e-14  Score=120.60  Aligned_cols=78  Identities=24%  Similarity=0.396  Sum_probs=62.4

Q ss_pred             CCCCCceEEecceeeeeeCCeEEEe------ccCCCcCCCCCceeeccceeecccccccCcceec----cEEEEecCccc
Q 032119           43 DEGPPAEVVEVSSFLHACEGDAVTK------LTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINES----YFSVKMMEGIV  112 (147)
Q Consensus        43 ~~Gpp~~vielG~f~H~~eg~lV~K------~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~----yfsvKl~~gI~  112 (147)
                      ..++.+.+++.    |+++++++++      +|.|++|  +.+||.|++.++...++  +...||    +|++||+++|.
T Consensus        51 ~~~~~~~~~~~----~~~~gv~~~~~~~~~l~t~n~~p--g~~vygek~~~~~~~~~--~~~~eyR~w~p~rSKlaa~i~  122 (293)
T PTZ00146         51 GGGPGKVIVVP----HRFPGVFIAKGKSDALVTKNMVP--GESVYGEKRISVEDAEG--GEKIEYRVWNPFRSKLAAAII  122 (293)
T ss_pred             CCCCCceEEee----eeecCEEEeecCCceeEeecCCC--CcccccceEEeeccCCC--CCcceeeeeCCcccHHHHHHH
Confidence            33456777776    9999999998      5899999  99999999999875542  135577    99999999998


Q ss_pred             ccccccCCEEEecCC-Ceeec
Q 032119          113 ATSYSLGDKFYIDPS-KLLPL  132 (147)
Q Consensus       113 a~sfk~gdkiyI~p~-KlLpl  132 (147)
                      ..    .+.|+|.|+ +||.|
T Consensus       123 ~g----~~~l~IkpG~~VLDL  139 (293)
T PTZ00146        123 GG----VANIPIKPGSKVLYL  139 (293)
T ss_pred             CC----cceeccCCCCEEEEe
Confidence            77    777888877 77765

>KOG2236 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=9.7e-08  Score=85.91  Aligned_cols=79  Identities=22%  Similarity=0.503  Sum_probs=70.1

Q ss_pred             eEEecceeeeeeCCeEEEeccCCC-cCCCCCceeeccceeecccccccCcceeccEEEEecCccccc--ccccCCEEEec
Q 032119           49 EVVEVSSFLHACEGDAVTKLTNEK-IPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVAT--SYSLGDKFYID  125 (147)
Q Consensus        49 ~vielG~f~H~~eg~lV~K~t~~~-VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~--sfk~gdkiyI~  125 (147)
                      ++++||.++-+.+...|+++|.++ |--+.+.+|+|+++-||.|+|||||+.++||.||....-.+.  .++.++++|+-
T Consensus       207 ~~~plG~V~svv~~~VII~s~~~~~vlde~Svlf~edR~~lG~I~EiFGpV~~P~YvvRFnS~~e~~~~gi~ig~~vy~a  286 (483)
T KOG2236|consen  207 ELLPLGKVSSVVDQQVIIESTCNKEVLDEDSVLFLEDRTALGQIFEIFGPVKNPYYVVRFNSEEEISFLGICIGEKVYYA  286 (483)
T ss_pred             ceechhHHHHHhhhceEEEeccCcccccccceEEeeccccchhhhhhhcccCCceEEEecCchhhhhhhccccCCeeEec
Confidence            688999999999999999998885 446999999999999999999999999999999998876655  66779999999


Q ss_pred             CC
Q 032119          126 PS  127 (147)
Q Consensus       126 p~  127 (147)
                      |.
T Consensus       287 p~  288 (483)
T KOG2236|consen  287 PD  288 (483)
T ss_pred             Cc
Confidence            83

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.42  E-value=4.4e-08  Score=81.43  Aligned_cols=67  Identities=24%  Similarity=0.364  Sum_probs=48.6

Q ss_pred             ee-eeCCeEEEe------ccCCCcCCCCCceeeccceeecccccccCcceec----cEEEEecCcccccccccCCEEEec
Q 032119           57 LH-ACEGDAVTK------LTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINES----YFSVKMMEGIVATSYSLGDKFYID  125 (147)
Q Consensus        57 ~H-~~eg~lV~K------~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~----yfsvKl~~gI~a~sfk~gdkiyI~  125 (147)
                      .| .+++.++++      +|.|++|  +.+||+|++..+...    +...||    +|++||+++|..+    .|.++|.
T Consensus         3 ~h~~~~gvy~~~~~~~~l~T~n~~p--g~~vYGEk~i~~~~~----~~~~eYR~W~P~RSKLaAai~~G----l~~~~ik   72 (229)
T PF01269_consen    3 PHERFEGVYIARGKGDALATKNLVP--GESVYGEKRISVEGE----GKKVEYRVWNPFRSKLAAAILKG----LENIPIK   72 (229)
T ss_dssp             EEESSTTEEEEETTSTEEEEE-SST--T--SSSSEEEEETTE-------EEEEEE-TTT-HHHHHHHTT-----S--S--
T ss_pred             ceeeecCEEEEecCCCeEEEecCCC--CCcccCceeEeecCC----CCccceeecCchhhHHHHHHHcC----ccccCCC
Confidence            48 889999997      5889999  999999999998554    457777    9999999999988    8999999


Q ss_pred             CC-Ceeecc
Q 032119          126 PS-KLLPLA  133 (147)
Q Consensus       126 p~-KlLpl~  133 (147)
                      |+ |+|||-
T Consensus        73 ~gskVLYLG   81 (229)
T PF01269_consen   73 PGSKVLYLG   81 (229)
T ss_dssp             TT-EEEEET
T ss_pred             CCCEEEEec
Confidence            99 999985

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=2.1e-05  Score=65.35  Aligned_cols=61  Identities=21%  Similarity=0.259  Sum_probs=50.9

Q ss_pred             eeCCeEEEe--------ccCCCcCCCCCceeeccceeecccccccCcceec----cEEEEecCcccccccccCCEEEecC
Q 032119           59 ACEGDAVTK--------LTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINES----YFSVKMMEGIVATSYSLGDKFYIDP  126 (147)
Q Consensus        59 ~~eg~lV~K--------~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~----yfsvKl~~gI~a~sfk~gdkiyI~p  126 (147)
                      .++++++++        +|.|.+|  +.+||+|+.++++..        ||    ++++||+++|..+    -+.+.|.+
T Consensus        11 ~~~gvy~~~~~dg~~~l~T~nl~p--g~~VYGE~ii~~~~~--------eYR~Wnp~RSKLaAaIl~G----l~~~pi~~   76 (231)
T COG1889          11 RFEGVYIVRFKDGSDRLATKNLVP--GERVYGERIIKVEGE--------EYREWNPRRSKLAAAILKG----LKNFPIKE   76 (231)
T ss_pred             ccCCeEEEEcccccceeeeecCCC--CccccCceeEEecCc--------ceeeeCcchhHHHHHHHcC----cccCCcCC
Confidence            467777776        4778999  999999999987332        44    7899999999988    78899999


Q ss_pred             C-Ceeecc
Q 032119          127 S-KLLPLA  133 (147)
Q Consensus       127 ~-KlLpl~  133 (147)
                      + |+|||-
T Consensus        77 g~~VLYLG   84 (231)
T COG1889          77 GSKVLYLG   84 (231)
T ss_pred             CCEEEEee
Confidence            9 999984

>PTZ00146 fibrillarin; Provisional

Probab=93.35  E-value=0.14  Score=44.07  Aligned_cols=16  Identities=25%  Similarity=0.194  Sum_probs=7.2

Q ss_pred             ecceeeeeeC-CeEEEe
Q 032119           52 EVSSFLHACE-GDAVTK   67 (147)
Q Consensus        52 elG~f~H~~e-g~lV~K   67 (147)
                      .-|.|..... +.|+-|
T Consensus        64 ~~gv~~~~~~~~~l~t~   80 (293)
T PTZ00146         64 FPGVFIAKGKSDALVTK   80 (293)
T ss_pred             ecCEEEeecCCceeEee
Confidence            4455555432 334444

>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]

Probab=80.46  E-value=3.2  Score=34.42  Aligned_cols=11  Identities=18%  Similarity=0.045  Sum_probs=5.7

Q ss_pred             ccccCCEEEec
Q 032119          115 SYSLGDKFYID  125 (147)
Q Consensus       115 sfk~gdkiyI~  125 (147)
                      |+|..|-|+..
T Consensus       107 sIK~~dgv~as  117 (215)
T KOG3262|consen  107 SIKPSDGVQAS  117 (215)
T ss_pred             EEecCCCceee
Confidence            45556655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
3u28_C	114	Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From		2e-31

>pdb|3U28|C Chain C, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 73/93 (78%)
Query: 45  GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFS 104
           GPP  V+E+ +FLH CEGD V +  N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F+
Sbjct: 22  GPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFT 81
Query: 105 VKMMEGIVATSYSLGDKFYIDPSKLLPLARFLP 137
           +K  +G+ ATS+  GDKFYI   KLLP+ RFLP
Sbjct: 82  IKCGDGVQATSFKEGDKFYIAADKLLPIERFLP 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
3u28_C	114	H/ACA ribonucleoprotein complex subunit 1; pseudou	100.0
2ey4_C	82	Small nucleolar RNP similar to GAR1; trimeric comp	99.95
2hvy_B	104	GAR1, small nucleolar RNP similar to GAR1; H/ACA R	99.93
2eqn_A	103	Hypothetical protein LOC92345; NAF1 domain, hypoth	99.9
2v3m_A	131	NAF1; ribosomal protein, GAR1, snoRNP, phosphoryla	99.88
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.15
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.4

>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C

Probab=100.00  E-value=1.2e-46  Score=280.67  Aligned_cols=97  Identities=61%  Similarity=1.090  Sum_probs=91.2

Q ss_pred             CCCCCCCceEEecceeeeeeCCeEEEeccCCCcCCCCCceeeccceeecccccccCcceeccEEEEecCcccccccccCC
Q 032119           41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGD  120 (147)
Q Consensus        41 ~~~~Gpp~~vielG~f~H~~eg~lV~K~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~sfk~gd  120 (147)
                      ++|+|||++|++||+|+|+||++||||+|+++||||||+||+|||++||||||||||++++||||||.++|+|+||+++|
T Consensus        18 ~~~~gpp~~v~elG~f~H~ceg~lV~k~~~~~VP~fNapVy~enK~~IGKVdEIFGPin~~YfsVK~~~gv~a~Sfk~gd   97 (114)
T 3u28_C           18 GSHMGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSFKEGD   97 (114)
T ss_dssp             -----CCSCEEEEEEEEEEETTEEEEEECSSSEECTTCEEECTTCCEEEEEEEEESBTTSCEEEEEECTTCCGGGCCTTC
T ss_pred             CCCCCCCHHHheeeeEEEEeCCeEEEEeCCCCCCCCCCEeEccCCccceeEeEEeCCCCccEEEEEecCCCcccccccCC
Confidence            46999999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCeeecccccC
Q 032119          121 KFYIDPSKLLPLARFLP  137 (147)
Q Consensus       121 kiyI~p~KlLpl~rFlp  137 (147)
                      +|||+++|||||+||||
T Consensus        98 k~YId~~kllPl~rFlp  114 (114)
T 3u28_C           98 KFYIAADKLLPIERFLP  114 (114)
T ss_dssp             EEEEEGGGEECGGGGCC
T ss_pred             EEEECccccCcHHhcCC
Confidence            99999999999999997

>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C

Probab=99.95  E-value=2e-28  Score=173.13  Aligned_cols=76  Identities=21%  Similarity=0.450  Sum_probs=68.9

Q ss_pred             CceEEecceeeeee-CCeEEEeccCCCcCCCCCceeeccceeecccccccCcceeccEEEEecCcccccccccCCEEEec
Q 032119           47 PAEVVEVSSFLHAC-EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYID  125 (147)
Q Consensus        47 p~~vielG~f~H~~-eg~lV~K~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~sfk~gdkiyI~  125 (147)
                      -++|++||+|+|.| ++++|||++  ++||||++||+||+++||||+|||||++++||+||+++ ..+.|| ++|+|||+
T Consensus         5 ~~~mk~lG~~~h~~~~g~lV~k~~--~~P~~na~Vy~e~~~~IGkV~dIfGPv~~pY~sVk~~~-~~~~s~-~g~klYi~   80 (82)
T 2ey4_C            5 GEKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKV-SNPEIY-VGEVLYVD   80 (82)
T ss_dssp             ---CBCCCCEEEEETTTEEEEECS--SCCCTTCEEECTTCCCCEEEEEEEEESSSCEEEEEECS-SSCSTT-BTCCCEEC
T ss_pred             cceeEEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEeCC-CChhhc-CCCeEEec
Confidence            47899999999999 999999985  79999999999999999999999999999999999998 567888 89999999


Q ss_pred             C
Q 032119          126 P  126 (147)
Q Consensus       126 p  126 (147)
                      |
T Consensus        81 ~   81 (82)
T 2ey4_C           81 E   81 (82)
T ss_dssp             -
T ss_pred             C
Confidence            8

>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*

Probab=99.93  E-value=5.9e-27  Score=172.14  Aligned_cols=75  Identities=20%  Similarity=0.438  Sum_probs=67.2

Q ss_pred             CceEEecceeeeee-CCeEEEeccCCCcCCCCCceeeccceeecccccccCcceeccEEEEecCcccccccc--cCCEEE
Q 032119           47 PAEVVEVSSFLHAC-EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYS--LGDKFY  123 (147)
Q Consensus        47 p~~vielG~f~H~~-eg~lV~K~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~sfk--~gdkiy  123 (147)
                      -++|++||+|+|.| +++||||++  ++||||++||+||+++||+|||||||++++||+||+++.    +|+  ++|+||
T Consensus         5 ~~~mk~lG~~~H~~~~g~lVvk~~--~vP~~na~Vy~enk~~IGKV~DIfGPV~~pY~sVKp~~~----s~~~~~G~klY   78 (104)
T 2hvy_B            5 GEKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVS----NPEIYVGEVLY   78 (104)
T ss_dssp             ---CEEEEEEEEEETTTEEEEECS--SCCCTTCEEECTTCCEEEEEEEEEEESSSCEEEEEECSS----CGGGGTTCEEE
T ss_pred             cceeeEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEecCC----CccccCCCEEE
Confidence            47899999999999 999999985  799999999999999999999999999999999999972    455  899999


Q ss_pred             ecCC
Q 032119          124 IDPS  127 (147)
Q Consensus       124 I~p~  127 (147)
                      |++.
T Consensus        79 I~~~   82 (104)
T 2hvy_B           79 VDER   82 (104)
T ss_dssp             ECC-
T ss_pred             EcCc
Confidence            9987

>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=1.8e-24  Score=158.21  Aligned_cols=80  Identities=16%  Similarity=0.340  Sum_probs=74.0

Q ss_pred             CCc-eEEecceeeeeeCCeEEEeccCC-CcCCCCCceeeccceeecccccccCcceeccEEEEec--CcccccccccCCE
Q 032119           46 PPA-EVVEVSSFLHACEGDAVTKLTNE-KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMM--EGIVATSYSLGDK  121 (147)
Q Consensus        46 pp~-~vielG~f~H~~eg~lV~K~t~~-~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~--~gI~a~sfk~gdk  121 (147)
                      ||+ +|++||+|+|.|++.+|||++.+ .+|++|+.||+|||++||||+|||||++++||+||++  ++|.+.+|+.+|+
T Consensus        20 ~~~~~v~~lG~v~~~~e~~vvik~~~~~~vl~~~s~l~~edk~~IGkV~EiFGpV~~PyysVk~~~~~~i~a~~~~~G~k   99 (103)
T 2eqn_A           20 PEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKET   99 (103)
T ss_dssp             CTTSCCEEEEEEEEECSSSEEEEECSSCCCCCTTCEEECTTSBEEEEEEEEESCSSSCEEEECCSSHHHHHHHTCCTTCE
T ss_pred             CCCCeeEEeEEEEEEcCCeEEEEeCCCCcCCcCCCEEEecCCcEEEEEEEEECCCCCCEEEEEeCcccccccccccCCCE
Confidence            454 78899999999999999999866 5999999999999999999999999999999999995  4889999999999


Q ss_pred             EEec
Q 032119          122 FYID  125 (147)
Q Consensus       122 iyI~  125 (147)
                      |||+
T Consensus       100 vY~~  103 (103)
T 2eqn_A          100 MYFA  103 (103)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9985

>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.7e-23  Score=158.92  Aligned_cols=81  Identities=20%  Similarity=0.389  Sum_probs=74.1

Q ss_pred             CceEEecceeeeeeCCeEEEeccC---CCcCCCCCceeeccceeecccccccCcceeccEEEEec----CcccccccccC
Q 032119           47 PAEVVEVSSFLHACEGDAVTKLTN---EKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMM----EGIVATSYSLG  119 (147)
Q Consensus        47 p~~vielG~f~H~~eg~lV~K~t~---~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~----~gI~a~sfk~g  119 (147)
                      -++|++||+|+|.|++++|||++.   ..+|++|++||+|||++||+|+|||||++++||+||++    ++|.+.++++|
T Consensus        27 ~~~v~~lG~i~~ive~~vVik~~~~g~~~vl~~~s~l~ledr~~IGkV~EiFGpV~~P~ysVk~~~~~~e~i~~~~~~~G  106 (131)
T 2v3m_A           27 KTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCLEDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRLG  106 (131)
T ss_dssp             TSCEEEEEEEEEEETTEEEEEEC-----CCCCTTCEEEETTCCEEEECCEEESCSSSCEEEEECCGGGHHHHHHHHTTTT
T ss_pred             CCEEEEeeeEEEEeCCcEEEEecCCCCccccCCCCEEEecCCcEEEEEEEEeCCCCCcEEEEEeCCcchhhhhhcccCCC
Confidence            367999999999999999999875   36999999999999999999999999999999999998    45899999999


Q ss_pred             CEEEecCC
Q 032119          120 DKFYIDPS  127 (147)
Q Consensus       120 dkiyI~p~  127 (147)
                      |+|||++.
T Consensus       107 ~kvY~~~~  114 (131)
T 2v3m_A          107 EKAFIVTP  114 (131)
T ss_dssp             SEEEEEC-
T ss_pred             CEEEECcC
Confidence            99999997

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.15  E-value=3.4e-07  Score=74.10  Aligned_cols=63  Identities=16%  Similarity=0.214  Sum_probs=51.9

Q ss_pred             eee-eeCCeEEEe--------ccCCCcCCCCCceeeccceeecccccccCcceec----cEEEEecCcccccccccCCEE
Q 032119           56 FLH-ACEGDAVTK--------LTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINES----YFSVKMMEGIVATSYSLGDKF  122 (147)
Q Consensus        56 f~H-~~eg~lV~K--------~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~----yfsvKl~~gI~a~sfk~gdki  122 (147)
                      ..| ++++++|++        +|.|++|  +.+||+|+..++..        +||    ++++||+++|..+    .|.|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~l~t~n~~~--g~~vyge~~~~~~~--------~e~r~w~p~rsklaa~i~~g----l~~l   73 (233)
T 4df3_A            8 SRHDRWRGVYVVELEDGSLRIATKNLVP--GQRVYGERIFRYNG--------EEYREWNAYRSKLAAALLKG----LIEL   73 (233)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEEECSST--TCCSSSCCEEEETT--------EEEEECCTTTCHHHHHHHTT----CSCC
T ss_pred             eEecccCCEEEEEccCCceeEEEecCCC--CCcccCceEEEcCC--------ceeeeECCCchHHHHHHHhc----hhhc
Confidence            468 789999997        5889999  99999999887643        355    8999999998776    6778


Q ss_pred             EecCC-Ceeec
Q 032119          123 YIDPS-KLLPL  132 (147)
Q Consensus       123 yI~p~-KlLpl  132 (147)
                      +|.|+ ++|.|
T Consensus        74 ~ikpG~~Vldl   84 (233)
T 4df3_A           74 PVKEGDRILYL   84 (233)
T ss_dssp             CCCTTCEEEEE
T ss_pred             CCCCCCEEEEe
Confidence            88887 77765

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=95.40  E-value=0.0026  Score=50.89  Aligned_cols=52  Identities=17%  Similarity=0.134  Sum_probs=37.8

Q ss_pred             eeeeeCCeEEEe--------ccCCCcCCCCCceeeccceeecccc-cccCcceeccEEEEecCccccc
Q 032119           56 FLHACEGDAVTK--------LTNEKIPYFNAPIYLQNKTQIGKVD-EIFGPINESYFSVKMMEGIVAT  114 (147)
Q Consensus        56 f~H~~eg~lV~K--------~t~~~VPyfNa~Vy~ekk~~IGkVd-EIFGpi~e~yfsvKl~~gI~a~  114 (147)
                      ..|+++++++++        +|+|++|  +..||.|+...+...+ +    .-+ ++.+|+++.+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~t~~~~p--g~~vy~e~~~~~~~~~yr----~w~-~~~skla~~ll~~   68 (232)
T 3id6_C            8 KQTNMENIYECEFNDGSFRLCTRNLVP--NFNVYGERLIKYEGVEYR----EWN-AFRSKLAGAILKG   68 (232)
T ss_dssp             EECSSTTEEEEECTTSCEEEEEECSST--TCCSSSCCEEEETTEEEE----ECC-TTTCHHHHHHHTT
T ss_pred             EeeccCcEEEEEccCCcceEEEecccC--CCCcccceeeeecCcchh----hhc-hHHHHHHHHHHhh
Confidence            367899999997        4889999  9999999998874321 1    111 5688888776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d2ey4c1	73	b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Py	1e-21

>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 73

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Gar1-like SnoRNP
domain: Gar1 homolog PF1791
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 80.5 bits (199), Expect = 1e-21
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 52  EVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGI 111
            +   LH  +   +   TN  +P  N  +  +    +G V ++FGP+   Y ++K     
Sbjct: 3   RLGKVLHYAKQGFLIVRTN-WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVSN 61

Query: 112 VATSYSLGDKFYID 125
                 +G+  Y+D
Sbjct: 62  PEI--YVGEVLYVD 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d2ey4c1	73	Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus	99.8
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.95
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.88

>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Gar1-like SnoRNP
domain: Gar1 homolog PF1791
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.80  E-value=1.6e-20  Score=128.37  Aligned_cols=73  Identities=21%  Similarity=0.391  Sum_probs=64.0

Q ss_pred             EEecceeeeeeCCeEEEeccCCCcCCCCCceeeccceeecccccccCcceeccEEEEecCcccccccccCCEEEec
Q 032119           50 VVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYID  125 (147)
Q Consensus        50 vielG~f~H~~eg~lV~K~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~sfk~gdkiyI~  125 (147)
                      |++||+++|.|++.+|+..+ +.+|++|+.||+|+++.||+|+|||||++++|++||++....+.  +.|+++|||
T Consensus         1 Mk~lG~i~hi~~~~~vI~~~-~~~p~~~~~v~~~~~~~iG~v~evfGpv~~P~~~v~~~~~~~~~--~vG~kvYvd   73 (73)
T d2ey4c1           1 MKRLGKVLHYAKQGFLIVRT-NWVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVSNPEI--YVGEVLYVD   73 (73)
T ss_dssp             CBCCCCEEEEETTTEEEEEC-SSCCCTTCEEECTTCCCCEEEEEEEEESSSCEEEEEECSSSCST--TBTCCCEEC
T ss_pred             CcEeEEEEEEcCCceEEEEC-CCCCCCCCEeECcCCcEEEEEEEEECCCCCcEEEEEECCCChhH--hCCCeEEeC
Confidence            56899999999876666543 68999999999999999999999999999999999999886654  359999997

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.95  E-value=6.1e-07  Score=69.86  Aligned_cols=63  Identities=19%  Similarity=0.163  Sum_probs=52.0

Q ss_pred             eeeeeCCeEEEe--------ccCCCcCCCCCceeeccceeecccccccCcceec----cEEEEecCcccccccccCCEEE
Q 032119           56 FLHACEGDAVTK--------LTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINES----YFSVKMMEGIVATSYSLGDKFY  123 (147)
Q Consensus        56 f~H~~eg~lV~K--------~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~----yfsvKl~~gI~a~sfk~gdkiy  123 (147)
                      ..|.+++.++++        +|.|.||  +.+||+|+..++.+        +||    ++++||+++|..+    .|.|.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~t~~~~~--g~~~y~e~~~~~~~--------~e~r~w~p~rsklaA~i~~g----l~~l~   71 (230)
T d1g8sa_           6 IKEIFENIYEVDLGDGLKRIATKSIVK--GKKVYDEKIIKIGD--------EEYRIWNPNKSKLAAAIIKG----LKVMP   71 (230)
T ss_dssp             EEEETTTEEEEECSSSCCEEEEECSST--TCCSSSCCEEEETT--------EEEEECCTTTCHHHHHHHTT----CCCCC
T ss_pred             cccccCceEEEEcCCCceeeEecCCCC--CCCccCceeeecCC--------ceeeeECCCccHHHHHHHhh----HHhCC
Confidence            357899999988        3789999  99999999998754        345    8899999999876    67888


Q ss_pred             ecCC-Ceeec
Q 032119          124 IDPS-KLLPL  132 (147)
Q Consensus       124 I~p~-KlLpl  132 (147)
                      |.|+ +||+|
T Consensus        72 ikpG~~VLDl   81 (230)
T d1g8sa_          72 IKRDSKILYL   81 (230)
T ss_dssp             CCTTCEEEEE
T ss_pred             CCCCCEEEEe
Confidence            8887 78876

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.88  E-value=6.7e-07  Score=69.79  Aligned_cols=62  Identities=21%  Similarity=0.196  Sum_probs=51.1

Q ss_pred             eeeeCCeEEEe--------ccCCCcCCCCCceeeccceeecccccccCcceec----cEEEEecCcccccccccCCEEEe
Q 032119           57 LHACEGDAVTK--------LTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINES----YFSVKMMEGIVATSYSLGDKFYI  124 (147)
Q Consensus        57 ~H~~eg~lV~K--------~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~----yfsvKl~~gI~a~sfk~gdkiyI  124 (147)
                      .|++++.++++        +|.|.||  +..||+|++.+...+        ||    ++++||+++|...    .|.++|
T Consensus         6 ~~~~~~~~~~~~~~~~~~l~t~n~~~--g~~vyge~~~~~~~~--------e~R~w~p~rSKlaa~i~~~----l~~l~i   71 (227)
T d1g8aa_           6 KHKFPGVYTVIDDDGSERIATKNLVP--GQRVYGERVIKWEGE--------EYRIWNPNRSKLGAAIMNG----LKNFPI   71 (227)
T ss_dssp             ECSSTTEEEEECSSSCSEEEEECSST--TCCCTTCCEEEETTE--------EEEECCTTTCHHHHHHHTT----CCCCCC
T ss_pred             ecccCceEEEEeCCCceEEEEecCCC--CCcccCceEEEcCCe--------eEEEECCCccHHHHHHHcc----cccccc
Confidence            58999999875        4889999  999999999886443        44    7899999999876    688888


Q ss_pred             cCC-Ceeec
Q 032119          125 DPS-KLLPL  132 (147)
Q Consensus       125 ~p~-KlLpl  132 (147)
                      .|+ ++|+|
T Consensus        72 ~pG~~VLDl   80 (227)
T d1g8aa_          72 KPGKSVLYL   80 (227)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEe
Confidence            888 88876