Citrus Sinensis ID: 032121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGR
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEccHHHHHHHHHHccccccEEcEEEEEEEEcccccccEEEEEEEEcccccccccccEEEEEEEEEEEEEcEEEEEEEEEEEEEcccccHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHccccEEEEEEcHHHHHHHHHcHcccccEEEcEEEEEEEEcccccccEEEEEEEEEcccHHHccccEEEEEEEEEEEccccEEEEEEEEEEEEEEEccHHHHHHHHHHHccHHHHHHHHHHHHHHcccEEccccccccc
Coil and Loop (DISEMBL)
mgepidlvkldgtwrlqytsapdVLVLFEAAarlpffkvgqifqkfecrdksdggvicnvvrwsvppllekeegatlvVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQaliapailprsFLSLQILQFIRAFKaqipvtnttpgr
Flexible Loop (DISEMBL)
mgepidlvkldgtwrlqYTSAPDVLVLFEAAARLPFFKVGQIFQKFEcrdksdggviCNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFkaqipvtnttpgr
Low Complexity Region (SEG)
MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGR
Disordered region (IsUnstruct)
****IDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPV*******
Disordered Region (DISOPRED)
**EPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIP*T******
Disordered Region (DISEMBL)
MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGR
Disordered Region (DISPRO)
**EPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVT******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q8W4F1	284	Probable plastid-lipid-as	yes	no	0.993	0.514	0.808	3e-66
Q9LW57	284	Probable plastid-lipid-as	no	no	0.646	0.334	0.327	0.0002

>sp|Q8W4F1|PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana GN=PAP10 PE=1 SV=1

 Score =  249 bits (637), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 136/146 (93%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct: 101 GEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 160

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           +WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct: 161 QWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALIAPAILPRS 220

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGR 147
           FLSLQ+LQFIR FKAQIPV  T+PGR
Sbjct: 221 FLSLQLLQFIRTFKAQIPVNATSPGR 246

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW57|PAP6_ARATH Probable plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 18/113 (15%)

Query: 2   GEPIDLV----KLDGTWRLQYTSAPDVLVLFEAAARLPFFK-----VGQIFQKFECRDKS 52
           G P+DL     KL G WRL Y+SA     L  +   LP  +     +GQ+FQ+ +   K 
Sbjct: 123 GGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSK- 181

Query: 53  DGGVICNV---VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQN 102
           D   I  V     W  PPL      AT  ++ KF+++    I + FE+ TV+ 
Sbjct: 182 DFDNIAEVELGAPWPFPPLE-----ATATLAHKFELLGTCKIKITFEKTTVKT 229

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
297824781	283	plastid-lipid associated protein pap [Ar	0.993	0.515	0.815	4e-65
21553852	284	unknown [Arabidopsis thaliana]	0.993	0.514	0.808	2e-64
18407205	284	putative plastid-lipid-associated protei	0.993	0.514	0.808	2e-64
255548157	285	structural molecule, putative [Ricinus c	1.0	0.515	0.790	3e-63
388510882	271	unknown [Lotus japonicus]	0.979	0.531	0.801	7e-61
356521622	276	PREDICTED: probable plastid-lipid-associ	0.972	0.518	0.786	2e-60
449453338	278	PREDICTED: probable plastid-lipid-associ	1.0	0.528	0.748	4e-60
225453694	278	PREDICTED: probable plastid-lipid-associ	0.959	0.507	0.801	7e-60
88175353	279	fibrillin 8 [Coffea canephora]	0.979	0.516	0.760	2e-59
356523465	182	PREDICTED: probable plastid-lipid-associ	0.918	0.741	0.785	2e-56

>gi|297824781|ref|XP_002880273.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata] gi|297326112|gb|EFH56532.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 137/146 (93%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           GE IDLVKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct: 100 GEEIDLVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 159

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           +WS+P LLE++EGATLVV+AKFD V  RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct: 160 QWSLPSLLEEQEGATLVVTAKFDKVCSRNIYLQFEEISVRNININEQLQALIAPAILPRS 219

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGR 147
           FLSLQ+LQFIR FKAQIPVT T+PGR
Sbjct: 220 FLSLQLLQFIRTFKAQIPVTATSPGR 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553852|gb|AAM62945.1| unknown [Arabidopsis thaliana]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 136/146 (93%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct: 101 GEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 160

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           +WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct: 161 QWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALIAPAILPRS 220

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGR 147
           FLSLQ+LQFIR FKAQIPV  T+PGR
Sbjct: 221 FLSLQLLQFIRTFKAQIPVNATSPGR 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407205|ref|NP_566091.1| putative plastid-lipid-associated protein 10 [Arabidopsis thaliana] gi|75162466|sp|Q8W4F1.1|PAP10_ARATH RecName: Full=Probable plastid-lipid-associated protein 10, chloroplastic; AltName: Full=Fibrillin-10; Flags: Precursor gi|17065042|gb|AAL32675.1| Unknown protein [Arabidopsis thaliana] gi|20197139|gb|AAC34229.2| Expressed protein [Arabidopsis thaliana] gi|20259994|gb|AAM13344.1| unknown protein [Arabidopsis thaliana] gi|330255676|gb|AEC10770.1| putative plastid-lipid-associated protein 10 [Arabidopsis thaliana]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 136/146 (93%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct: 101 GEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 160

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           +WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct: 161 QWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALIAPAILPRS 220

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGR 147
           FLSLQ+LQFIR FKAQIPV  T+PGR
Sbjct: 221 FLSLQLLQFIRTFKAQIPVNATSPGR 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548157|ref|XP_002515135.1| structural molecule, putative [Ricinus communis] gi|223545615|gb|EEF47119.1| structural molecule, putative [Ricinus communis]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/148 (79%), Positives = 134/148 (90%), Gaps = 1/148 (0%)

Query: 1   MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNV 60
           +G PIDLVKLDGTWRLQYTSAPDVL+L E++ARLPF +VGQIFQKFECRD+S GG+I NV
Sbjct: 100 VGAPIDLVKLDGTWRLQYTSAPDVLILLESSARLPFLQVGQIFQKFECRDQSSGGIIRNV 159

Query: 61  VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPR 120
           VRWS+P + E+++GATL+VSAKFDVVS RNIYLQFEE+++QNI ISEE+QALIAPAILPR
Sbjct: 160 VRWSIPTVFEEQDGATLLVSAKFDVVSARNIYLQFEEISIQNIKISEEVQALIAPAILPR 219

Query: 121 SFLSLQILQFIRAFKAQIPVTN-TTPGR 147
           SF SLQILQFIRAFKAQIPV N   PGR
Sbjct: 220 SFFSLQILQFIRAFKAQIPVRNPGNPGR 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510882|gb|AFK43507.1| unknown [Lotus japonicus]

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 136/146 (93%), Gaps = 2/146 (1%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           G+PI+L KLDGTWRLQYTSA DVLVLFEAAARLPFF+VGQIFQKFECRD+S+GGVI NVV
Sbjct: 91  GDPINLNKLDGTWRLQYTSAFDVLVLFEAAARLPFFQVGQIFQKFECRDESNGGVIRNVV 150

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           RWSVP LLE+++GATL+VSAKF VVSVRNIY QF+E+T+Q+I I+E+LQALIAPA+LPRS
Sbjct: 151 RWSVPNLLEEQDGATLLVSAKFTVVSVRNIYPQFQEITLQDININEQLQALIAPALLPRS 210

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGR 147
           +LSLQILQF+RAFKAQIPV +  PGR
Sbjct: 211 YLSLQILQFLRAFKAQIPVRD--PGR 234

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521622|ref|XP_003529453.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Glycine max]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 132/145 (91%), Gaps = 2/145 (1%)

Query: 3   EPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVR 62
            PI+L  LDGTWRLQYTSA DVL+L +AAA LPFF+VGQIFQKFECRD+S+GGVI NVVR
Sbjct: 97  HPINLSNLDGTWRLQYTSASDVLILLQAAATLPFFQVGQIFQKFECRDQSNGGVIRNVVR 156

Query: 63  WSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSF 122
           WS+P LLE++EGATL+VSAKF+VVSVRNIYLQF+E+T+Q+I ISEELQALIAPAILPRSF
Sbjct: 157 WSIPNLLEEQEGATLLVSAKFNVVSVRNIYLQFQEITIQDINISEELQALIAPAILPRSF 216

Query: 123 LSLQILQFIRAFKAQIPVTNTTPGR 147
           +SLQILQF+R FKAQIPV +  PGR
Sbjct: 217 ISLQILQFLRTFKAQIPVRD--PGR 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453338|ref|XP_004144415.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Cucumis sativus] gi|449500056|ref|XP_004160991.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Cucumis sativus]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 132/147 (89%)

Query: 1   MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNV 60
           MG PIDL+KLDGTWRLQYTSAPDVL+L EAA RLPFF++GQIFQKFEC+D S+ G++ NV
Sbjct: 95  MGLPIDLMKLDGTWRLQYTSAPDVLILLEAADRLPFFQIGQIFQKFECQDSSNEGIVRNV 154

Query: 61  VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPR 120
           VRWS+P LLE++EGATL+VSAKF VVS+RNIYL+FEE++VQNI ISE+LQALIAPAILPR
Sbjct: 155 VRWSIPSLLEEQEGATLLVSAKFSVVSLRNIYLEFEEISVQNIKISEQLQALIAPAILPR 214

Query: 121 SFLSLQILQFIRAFKAQIPVTNTTPGR 147
           SFLSLQILQF+R+F+  +PV N+   R
Sbjct: 215 SFLSLQILQFLRSFQVGVPVRNSGSSR 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453694|ref|XP_002270341.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic [Vitis vinifera] gi|296089046|emb|CBI38749.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (598), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 113/141 (80%), Positives = 128/141 (90%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           G PIDL KLDGTWRLQYTSAPDVLVL E+AAR  FF+VGQIFQKFEC+++S  GV+ NVV
Sbjct: 99  GVPIDLGKLDGTWRLQYTSAPDVLVLLESAARFSFFQVGQIFQKFECQNQSKEGVVRNVV 158

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           RWS+PPLLE++EGATL+VSAKF VVS RNIYLQFEE+++Q+I ISEELQALIAPAILPRS
Sbjct: 159 RWSIPPLLEEQEGATLLVSAKFSVVSARNIYLQFEEISIQSINISEELQALIAPAILPRS 218

Query: 122 FLSLQILQFIRAFKAQIPVTN 142
           FLSLQILQFIR FKA+IPV N
Sbjct: 219 FLSLQILQFIRTFKAEIPVRN 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|88175353|gb|ABD39695.1| fibrillin 8 [Coffea canephora]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/146 (76%), Positives = 130/146 (89%), Gaps = 2/146 (1%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
           GE IDL +LDGTWRLQYTSAPDVL+LFE+A+RLPFF+VGQ+FQKFEC+D+S+GGV+ N+V
Sbjct: 98  GEAIDLGELDGTWRLQYTSAPDVLILFESASRLPFFQVGQVFQKFECQDESNGGVVRNIV 157

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           +WS+P LLE++EGATL+VSAKF VVS RNIY QFEE+    I ISEELQALIAPAILPRS
Sbjct: 158 KWSIPSLLEEQEGATLLVSAKFSVVSSRNIYFQFEEIAFNKINISEELQALIAPAILPRS 217

Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGR 147
           F+SLQILQFIRAFKA+ PV N  PGR
Sbjct: 218 FISLQILQFIRAFKAEFPVRN--PGR 241

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523465|ref|XP_003530359.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Glycine max]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/135 (78%), Positives = 122/135 (90%)

Query: 2   GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
             PI+  KLDGTWRLQYTS+ DVLVL +AAA LPFF+VGQIFQKFEC D+S GGVI NVV
Sbjct: 48  SHPINFSKLDGTWRLQYTSSSDVLVLLQAAATLPFFQVGQIFQKFECGDQSHGGVIRNVV 107

Query: 62  RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
           RWS+P LLE++EGATL+VSAKF+VVSVRNIYLQF+E+TVQ+IYISEEL+ALIAPAILPRS
Sbjct: 108 RWSIPNLLEEQEGATLLVSAKFNVVSVRNIYLQFQEITVQDIYISEELRALIAPAILPRS 167

Query: 122 FLSLQILQFIRAFKA 136
           F+SLQILQF+  FKA
Sbjct: 168 FISLQILQFLHTFKA 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2041454	284	AT2G46910 [Arabidopsis thalian	0.993	0.514	0.808	8.1e-60
TAIR|locus:2090890	284	FIB4 "fibrillin 4" [Arabidopsi	0.775	0.401	0.330	5.4e-05

TAIR|locus:2041454 AT2G46910 [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 118/146 (80%), Positives = 136/146 (93%)

Query:     2 GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
             GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct:   101 GEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 160

Query:    62 RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
             +WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct:   161 QWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALIAPAILPRS 220

Query:   122 FLSLQILQFIRAFKAQIPVTNTTPGR 147
             FLSLQ+LQFIR FKAQIPV  T+PGR
Sbjct:   221 FLSLQLLQFIRTFKAQIPVNATSPGR 246

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2090890 FIB4 "fibrillin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 44/133 (33%), Positives = 61/133 (45%)

Query:     2 GEPIDLV----KLDGTWRLQYTSAPDVLVLFEAAARLPFFKV-----GQIFQKFECRDKS 52
             G P+DL     KL G WRL Y+SA     L  +   LP  ++     GQ+FQ+ +   K 
Sbjct:   123 GGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSK- 181

Query:    53 DGGVICNV---VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEEL 109
             D   I  V     W  PPL   E  ATL  + KF+++    I + FE+ TV+      ++
Sbjct:   182 DFDNIAEVELGAPWPFPPL---EATATL--AHKFELLGTCKIKITFEKTTVKTSGNLSQI 236

Query:   110 QALIAPAILPRSF 122
                  P  LP SF
Sbjct:   237 PPFDIPR-LPDSF 248


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      147       147   0.00091  103 3  11 22  0.41    31
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  130 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.76u 0.09s 12.85t   Elapsed:  00:00:01
  Total cpu time:  12.76u 0.09s 12.85t   Elapsed:  00:00:01
  Start:  Fri May 10 16:32:41 2013   End:  Fri May 10 16:32:42 2013

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010193 "response to ozone" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W4F1	PAP10_ARATH	No assigned EC number	0.8082	0.9931	0.5140	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_403662.1	annotation not avaliable (283 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.5__435__AT3G26710.1	annotation not avaliable (267 aa)			•	•					0.545
	fgenesh2_kg.3__2759__AT2G04039.1	annotation not avaliable (196 aa)			•	•					0.537
	fgenesh2_kg.4__831__AT2G28605.1	annotation not avaliable (240 aa)			•	•					0.526
	fgenesh2_kg.7__2771__AT4G15510.1	annotation not avaliable (286 aa)			•	•					0.520
	fgenesh2_kg.6__2339__AT5G23440.1	annotation not avaliable (182 aa)			•	•					0.516
	fgenesh2_kg.5__794__AT3G43540.1	annotation not avaliable (372 aa)			•	•					0.515
	scaffold_604173.1	annotation not avaliable (167 aa)			•	•					0.511
	scaffold_700251.1	annotation not avaliable (194 aa)			•						0.504
	fgenesh2_kg.6__2705__AT5G27560.1	annotation not avaliable (340 aa)			•	•					0.502
	fgenesh2_kg.5__361__AT3G26070.1	annotation not avaliable (242 aa)			•						0.502

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	4e-11

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 6   DLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSV 65
            L  L+G WRL YT++ ++L L  A  RLP  KVGQI+Q  +  + +    + N V +S 
Sbjct: 47  SLDLLNGKWRLLYTTSKELLPLL-ARGRLPLLKVGQIYQTIDVNNLT----VYNSVTFSG 101

Query: 66  PPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNI 103
           P         +  V AKF++ S + + ++FE   +   
Sbjct: 102 PLAE-----GSFSVRAKFEIRSPKRVQIRFERGVLGTP 134

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.81

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.81  E-value=1.8e-19  Score=141.10  Aligned_cols=93  Identities=38%  Similarity=0.673  Sum_probs=80.8

Q ss_pred             CCCCc-cCCCceEEEEEecchhhHHHHHhhccCCceeeeeeeEEEeeecCCCCceEEEEEEecC-CccccccCceeEEEE
Q 032121            3 EPIDL-VKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSV-PPLLEKEEGATLVVS   80 (147)
Q Consensus         3 ~~l~~-~lL~G~WrLlYTTa~ell~ll~a~~~lP~v~vG~IyQ~ID~~~~~~~~~v~Nvv~~~~-P~~~~~~~G~~l~V~   80 (147)
                      +|++. ++|+|+|+|+|||+.+..+.++. +++|++++|+|||+||    .+++++.|+++|.. |..    +| .+.|+
T Consensus        43 ~p~~s~~~L~G~W~Lvytt~~~~~~~l~~-~~~~~~~~~~v~Q~id----~~~~~~~N~v~~~~~~~~----~~-~~~v~  112 (198)
T PF04755_consen   43 DPADSLPLLDGRWELVYTTSPEIRSLLQR-GRLPGVRVGRVFQTID----ADNGRVENVVELSGFPLL----EG-SVSVR  112 (198)
T ss_pred             CCcCCchhcCcEEEEEeecCCCccccccc-cccccccccceEEEEE----CCCceEEEEEEEeccCce----EE-EEEEE
Confidence            45666 89999999999999999987764 6778899999999999    55889999999875 543    34 89999


Q ss_pred             EEEEEcCCceEEEEEEEEEEecccc
Q 032121           81 AKFDVVSVRNIYLQFEEVTVQNIYI  105 (147)
Q Consensus        81 A~fev~s~~RV~v~Fe~~~v~~~~i  105 (147)
                      |++++.+++|+.++|+++.++...+
T Consensus       113 a~~~~~~~~rv~v~f~~~~l~~~~~  137 (198)
T PF04755_consen  113 ASLEVRSPRRVEVTFERASLKPPSL  137 (198)
T ss_pred             EEEEEccccEEEEEEEeeEEcccce
Confidence            9999999999999999999988776

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00