Citrus Sinensis ID: 032133

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MRPRVTMRVHYYKTTDYVFPSIRSSGSHMGFSCYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESASS
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccccccccHHHHHHHHHccHHHHHccEEEEEEcEEEEEEEEEcHHHHHHHccccccEEEcccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEccccccHHHHHHHHHHHHHHccHHHHHHHHHEEcccccccEEEEEcHHHHHHHcccccEEEEEccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mrprvtmrVHYYkttdyvfpsirssgshmgfscySMEEAKKNMYAFstttytgfqctvseetsekfkglpgvlwvlpdsyidvknkdyggdkyvngeiipctyptyqpnkrkeskYVSKRYerrrdgppaerrtrqaagqsesass
Flexible Loop (DISEMBL)
mrprvtmrvhyykttdyvfpsirssgSHMGFSCYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIipctyptyqpnkrkeskyvskryerrrdgppaerrtrqaagqsesass
Low Complexity Region (SEG)
MRPRVTMRVHYYKTTDYVFPSIRSSGSHMGFSCYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESASS
Disordered region (IsUnstruct)
*****************************************NMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTY****************************************
Disordered Region (DISOPRED)
******M*VHYYKTTDYVFPSIRSSGSHMGFSCYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEII***********************************************
Disordered Region (DISEMBL)
MRPRVTMRVHYYKTTDYVFPSIRSSGSHMGFSCYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQP**************************************
Disordered Region (DISPRO)
****VTMRVHYYKTTDYVFPSIRSSGSHMGFSCYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYP******************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPRVTMRVHYYKTTDYVFPSIRSSGSHMGFSCYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESASS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
Q38732	230	DAG protein, chloroplasti	N/A	no	0.760	0.482	0.801	8e-48
Q9LKA5	395	Uncharacterized protein A	no	no	0.452	0.167	0.5	1e-13

>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1

 Score =  188 bits (478), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 89/111 (80%), Positives = 97/111 (87%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           SMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV
Sbjct: 120 SMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 179

Query: 95  NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESAS 145
           NGEIIPC YPTYQP + + SKY SK Y R+RDGPPAE+R  +     ES++
Sbjct: 180 NGEIIPCQYPTYQPKQSRSSKYKSKAYVRQRDGPPAEQRRPKQEATPESST 230

Acts very early in chloroplast development, being required for expression of RNA polymerase beta subunit gene, and hence indirectly for subsequent expression of CAB and RBCS genes.
Antirrhinum majus (taxid: 4151)

>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 46/66 (69%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           S +EA+  +Y+ ST  Y  F   VSE+ S K K L  V WVLPDSY+DV+NKDYGG+ ++
Sbjct: 130 SEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFI 189

Query: 95  NGEIIP 100
           +G+ +P
Sbjct: 190 DGKAVP 195

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
15220382	232	putative plastid developmental protein D	0.753	0.474	0.803	2e-47
21593052	232	DAG protein, putative [Arabidopsis thali	0.753	0.474	0.803	2e-47
297843972	232	hypothetical protein ARALYDRAFT_471280 [	0.753	0.474	0.803	3e-47
326502812	228	predicted protein [Hordeum vulgare subsp	0.767	0.491	0.883	1e-46
357144631	229	PREDICTED: DAG protein, chloroplastic-li	0.767	0.489	0.875	2e-46
449468532	230	PREDICTED: DAG protein, chloroplastic-li	0.760	0.482	0.803	4e-46
225461197	229	PREDICTED: DAG protein, chloroplastic is	0.760	0.484	0.892	5e-46
6014904	230	RecName: Full=DAG protein, chloroplastic	0.760	0.482	0.801	5e-46
255629093	225	unknown [Glycine max]	0.760	0.493	0.814	1e-45
302143172	127	unnamed protein product [Vitis vinifera]	0.760	0.874	0.892	1e-45

>gi|15220382|ref|NP_172610.1| putative plastid developmental protein DAG [Arabidopsis thaliana] gi|6554182|gb|AAF16628.1|AC011661_6 T23J18.10 [Arabidopsis thaliana] gi|26450103|dbj|BAC42171.1| unknown protein [Arabidopsis thaliana] gi|28827520|gb|AAO50604.1| putative DAG protein [Arabidopsis thaliana] gi|332190614|gb|AEE28735.1| putative plastid developmental protein DAG [Arabidopsis thaliana]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 99/112 (88%), Gaps = 2/112 (1%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           SMEEAKKNMYAFSTTTYTGFQCT+ EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+
Sbjct: 121 SMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYI 180

Query: 95  NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPA--ERRTRQAAGQSESA 144
           NGEIIPCTYPTYQP +R  +KY SKRYER+RDGPP   +R+ RQ    S+S+
Sbjct: 181 NGEIIPCTYPTYQPKQRNNTKYQSKRYERKRDGPPPPEQRKPRQEPAASDSS 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593052|gb|AAM65001.1| DAG protein, putative [Arabidopsis thaliana]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 99/112 (88%), Gaps = 2/112 (1%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           SMEEAKKNMYAFSTTTYTGFQCT+ EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+
Sbjct: 121 SMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYI 180

Query: 95  NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPA--ERRTRQAAGQSESA 144
           NGEIIPCTYPTYQP +R  +KY SKRYER+RDGPP   +R+ RQ    S+S+
Sbjct: 181 NGEIIPCTYPTYQPKQRNNTKYQSKRYERKRDGPPPPEQRKPRQEPAASDSS 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843972|ref|XP_002889867.1| hypothetical protein ARALYDRAFT_471280 [Arabidopsis lyrata subsp. lyrata] gi|297335709|gb|EFH66126.1| hypothetical protein ARALYDRAFT_471280 [Arabidopsis lyrata subsp. lyrata]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 99/112 (88%), Gaps = 2/112 (1%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           SMEEAKKNMYAFSTTTYTGFQCT+ EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+
Sbjct: 121 SMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYI 180

Query: 95  NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPA--ERRTRQAAGQSESA 144
           NGEIIPCTYPTYQP +R  +KY SKRYER+RDGPP   +R+ RQ    S+S+
Sbjct: 181 NGEIIPCTYPTYQPKQRNNTKYQSKRYERKRDGPPPPEQRKPRQEPAASDSS 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326502812|dbj|BAJ99034.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326524846|dbj|BAK04359.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/112 (88%), Positives = 104/112 (92%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           SMEEAKKNMYAFSTTTYTGFQCTV EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+
Sbjct: 117 SMEEAKKNMYAFSTTTYTGFQCTVDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYI 176

Query: 95  NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESASS 146
           NGEIIPCTYPTYQP +R+ SKY S+RYERRRDGPPA RR +Q AGQ ESASS
Sbjct: 177 NGEIIPCTYPTYQPKERRTSKYESRRYERRRDGPPASRRPKQQAGQPESASS 228

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357144631|ref|XP_003573360.1| PREDICTED: DAG protein, chloroplastic-like [Brachypodium distachyon]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/112 (87%), Positives = 103/112 (91%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           SMEEAKKNMYAFSTTTYTGFQCTV EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+
Sbjct: 118 SMEEAKKNMYAFSTTTYTGFQCTVDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYI 177

Query: 95  NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESASS 146
           NGEIIPCTYPTYQP +R+ SKY S+RYERRRDGPPA RR +Q A Q ESASS
Sbjct: 178 NGEIIPCTYPTYQPKERRTSKYESRRYERRRDGPPASRRPKQQATQPESASS 229

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468532|ref|XP_004151975.1| PREDICTED: DAG protein, chloroplastic-like [Cucumis sativus]

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 99/112 (88%), Gaps = 1/112 (0%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+
Sbjct: 118 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYI 177

Query: 95  NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAE-RRTRQAAGQSESAS 145
           NGEIIP  YP Y+P KR+E+KY S+RYER+RDGPP E R+ R    ++ES S
Sbjct: 178 NGEIIPSKYPVYEPKKRRETKYESRRYERKRDGPPPEQRKPRPQPTRTESNS 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461197|ref|XP_002283211.1| PREDICTED: DAG protein, chloroplastic isoform 1 [Vitis vinifera] gi|359493924|ref|XP_003634693.1| PREDICTED: DAG protein, chloroplastic isoform 2 [Vitis vinifera]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/112 (89%), Positives = 105/112 (93%), Gaps = 1/112 (0%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+
Sbjct: 117 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYI 176

Query: 95  NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAE-RRTRQAAGQSESAS 145
           NGEIIPCTYPTYQP +R+ESKY S+RYERRRDGPPAE RR RQ A +SES S
Sbjct: 177 NGEIIPCTYPTYQPKQRRESKYESRRYERRRDGPPAEKRRPRQEASRSESNS 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6014904|sp|Q38732.1|DAG_ANTMA RecName: Full=DAG protein, chloroplastic; Flags: Precursor gi|1200205|emb|CAA65064.1| DAG [Antirrhinum majus]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 89/111 (80%), Positives = 97/111 (87%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           SMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV
Sbjct: 120 SMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 179

Query: 95  NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESAS 145
           NGEIIPC YPTYQP + + SKY SK Y R+RDGPPAE+R  +     ES++
Sbjct: 180 NGEIIPCQYPTYQPKQSRSSKYKSKAYVRQRDGPPAEQRRPKQEATPESST 230

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629093|gb|ACU14891.1| unknown [Glycine max]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 98/113 (86%), Gaps = 2/113 (1%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           SMEEAKKNMYAFSTTTYTGFQCTV E TSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+
Sbjct: 114 SMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYI 173

Query: 95  NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRT-RQAAGQSESASS 146
           NGEIIPC YPTYQP KR   K  S+RYERRRDGPP +RR  RQ A  S+S+S+
Sbjct: 174 NGEIIPCKYPTYQP-KRSAPKNESRRYERRRDGPPPDRRKPRQEAAASDSSST 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143172|emb|CBI20467.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/112 (89%), Positives = 105/112 (93%), Gaps = 1/112 (0%)

Query: 35  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
           SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+
Sbjct: 15  SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYI 74

Query: 95  NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAE-RRTRQAAGQSESAS 145
           NGEIIPCTYPTYQP +R+ESKY S+RYERRRDGPPAE RR RQ A +SES S
Sbjct: 75  NGEIIPCTYPTYQPKQRRESKYESRRYERRRDGPPAEKRRPRQEASRSESNS 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2200131	232	MORF9 "multiple organellar RNA	0.753	0.474	0.803	2.6e-47
TAIR|locus:2083348	244	MORF3 "multiple organellar RNA	0.650	0.389	0.551	1.8e-23
UNIPROTKB|Q2R8U1	374	Os11g0216400 "Os11g0216400 pro	0.630	0.245	0.525	2.6e-22
TAIR|locus:2119782	419	MORF1 "multiple organellar RNA	0.712	0.248	0.490	1.3e-19
TAIR|locus:2206639	229	AT1G32580 "AT1G32580" [Arabido	0.643	0.410	0.465	1.1e-18
TAIR|locus:2051003	219	DAL1 "differentiation and gree	0.630	0.420	0.484	1.1e-18
TAIR|locus:2156344	723	MORF4 "AT5G44780" [Arabidopsis	0.719	0.145	0.495	1.8e-18
TAIR|locus:2063389	232	MORF6 "multiple organellar RNA	0.643	0.405	0.455	1.6e-17
TAIR|locus:2086310	395	RIP1 "RNA-editing factor inter	0.732	0.270	0.394	6.3e-16
TAIR|locus:2009625	271	AT1G53260 [Arabidopsis thalian	0.431	0.232	0.5	2e-12

TAIR|locus:2200131 MORF9 "multiple organellar RNA editing factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 90/112 (80%), Positives = 99/112 (88%)

Query:    35 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
             SMEEAKKNMYAFSTTTYTGFQCT+ EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+
Sbjct:   121 SMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYI 180

Query:    95 NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPA--ERRTRQAAGQSESA 144
             NGEIIPCTYPTYQP +R  +KY SKRYER+RDGPP   +R+ RQ    S+S+
Sbjct:   181 NGEIIPCTYPTYQPKQRNNTKYQSKRYERKRDGPPPPEQRKPRQEPAASDSS 232

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:1900865 "chloroplast RNA modification" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2083348 MORF3 "multiple organellar RNA editing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 54/98 (55%), Positives = 70/98 (71%)

Query:    37 EEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNG 96
             EEAKK +Y+  T+TYTGF   +SEE S K K LPGVLWVLPDSY+DV NKDYGGD YV G
Sbjct:   129 EEAKKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLDVPNKDYGGDLYVEG 188

Query:    97 EIIPCTYPTYQPNKRKESKYVSK-RYERRRDGPPAERR 133
             ++IP   P Y+  +++ ++   + RY+RRR+    ERR
Sbjct:   189 KVIP--RPQYRFTEQRHTRPRPRPRYDRRRETMQVERR 224

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

UNIPROTKB|Q2R8U1 Os11g0216400 "Os11g0216400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 51/97 (52%), Positives = 68/97 (70%)

Query:    35 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
             S EEAKK MYAFSTTTY GFQ  ++EE SEKF+GLPGV+++LPDSY+  + K+YGGDKY 
Sbjct:   124 SYEEAKKRMYAFSTTTYVGFQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYE 183

Query:    95 NGEIIPCTYPTY--QPNKRKESKYVSKRYERRRDGPP 129
             NG I P   P +  +P++   ++     Y+   +GPP
Sbjct:   184 NGVITPRPPPVHYSKPSRTDRNRNYRGNYQ---NGPP 217

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

TAIR|locus:2119782 MORF1 "multiple organellar RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 52/106 (49%), Positives = 65/106 (61%)

Query:    35 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
             S+EEAK+ MYA STTTY GFQ  ++E+ SEKFK LPGV+++LPDSYID +NK+YGGDKY 
Sbjct:   123 SVEEAKQRMYACSTTTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGDKYE 182

Query:    95 NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQ 140
             NG I     P      R   ++   R      GP   +R  Q   Q
Sbjct:   183 NGVITHRPPPIQSGRARPRPRF--DRSGGGSGGPQNFQRNTQYGQQ 226

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

GO:1900865 "chloroplast RNA modification" evidence=IMP

TAIR|locus:2206639 AT1G32580 "AT1G32580" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 47/101 (46%), Positives = 63/101 (62%)

Query:    35 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
             S EEAKK +Y  S   Y GF C + EETS K +GLPGVL++LPDSY+D +NKDYG + +V
Sbjct:   127 SEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQENKDYGAELFV 186

Query:    95 NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTR 135
             NGEI+       +P +R+  K +    +R  D P    +TR
Sbjct:   187 NGEIVQ------RPPERQR-KIIELTTQRTNDKPKYHDKTR 220

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2051003 DAL1 "differentiation and greening-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 48/99 (48%), Positives = 63/99 (63%)

Query:    35 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
             S EEAKK +Y  S   Y GF C + EETS K +GLPGVL+VLPDSY+D +NKDYG + +V
Sbjct:   118 SEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFV 177

Query:    95 NGEII---PCTYPTYQPNKRKES---KYVSK-RYERRRD 126
             NGEI+   P      +P  ++     +Y  + RY RRR+
Sbjct:   178 NGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYSRRRE 216

GO:0003674 "molecular_function" evidence=ND

GO:0002103 "endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2156344 MORF4 "AT5G44780" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.8e-18, P = 1.8e-18
 Identities = 55/111 (49%), Positives = 70/111 (63%)

Query:    35 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
             S+EEAKK +YA  TT+Y GFQ T++    EKF+ LPGV +++PDSYIDV+NK YGGDKY 
Sbjct:   117 SLEEAKKKIYAICTTSYQGFQATMTIGEVEKFRDLPGVQYIIPDSYIDVENKVYGGDKYE 176

Query:    95 NGEIIP--CTYPTYQ--PNKRKESKYVSKRYERRRDGPPAERRTR-QAAGQ 140
             NG I P     PT +   + +KESK   +  E     PP E +T  Q  GQ
Sbjct:   177 NGVITPGPVPVPTKEGFDSLKKESKPEQEEAEIILT-PPDEGKTSGQVQGQ 226

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2063389 MORF6 "multiple organellar RNA editing factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/101 (45%), Positives = 62/101 (61%)

Query:    35 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
             S EEA+K +Y  S   Y GF C + EETS K +GLPGVL+VLPDSY+D + KDYG + +V
Sbjct:   130 SEEEARKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAELFV 189

Query:    95 NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTR 135
             NGE++P      +P +R+  + V    +R  D P    R R
Sbjct:   190 NGEVVP------RPPERQR-RMVELTNQRGSDKPKYHDRIR 223

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2086310 RIP1 "RNA-editing factor interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query:    35 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
             S +EA+  +Y+ ST  Y  F   VSE+ S K K L  V WVLPDSY+DV+NKDYGG+ ++
Sbjct:   130 SEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFI 189

Query:    95 NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSES 143
             +G+ +P   P Y     + +   ++R  RR D P    R+R    + E+
Sbjct:   190 DGKAVPYD-PKYHEEWIRNNARANER-NRRNDRPRNNDRSRNFERRREN 236

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2009625 AT1G53260 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 32/64 (50%), Positives = 42/64 (65%)

Query:    43 MYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCT 102
             +Y+ S   Y  F   VSE+ S K K LP V WVLPDSY+D KNKDYGG+ +++G+ +P  
Sbjct:     3 IYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVPYD 62

Query:   103 YPTY 106
              P Y
Sbjct:    63 -PKY 65

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G11430	plastid developmental protein DAG, putative; plastid developmental protein DAG, putative; LOCATED IN- chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- plastid developmental protein DAG, putative (TAIR-AT3G06790.2); Has 147 Blast hits to 135 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (232 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT3G08740	elongation factor P (EF-P) family protein; elongation factor P (EF-P) family protein; FUNCTIONS [...] (236 aa)				•			•		0.896
	AT5G55220	trigger factor type chaperone family protein; trigger factor type chaperone family protein; FUN [...] (547 aa)				•			•		0.894
	CHL-CPN10	CHL-CPN10 (CHLOROPLAST CHAPERONIN 10); chaperone binding; Encodes a chloroplast-localized chape [...] (139 aa)				•			•		0.883
	AT1G36390	co-chaperone grpE family protein; co-chaperone grpE family protein; FUNCTIONS IN- protein bindi [...] (279 aa)				•			•		0.875
	AT3G12930	unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN [...] (238 aa)				•					0.843
	AT5G58250	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (211 aa)				•					0.841
	AT3G18680	aspartate/glutamate/uridylate kinase family protein; aspartate/glutamate/uridylate kinase famil [...] (339 aa)				•					0.841
	CP33	CP33; RNA binding; chloroplast RNA-binding protein (329 aa)				•					0.835
	emb2184	emb2184 (embryo defective 2184); structural constituent of ribosome; embryo defective 2184 (emb [...] (144 aa)				•			•		0.832
	EMB1241	EMB1241 (embryo defective 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein [...] (326 aa)				•			•		0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PF05922	82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	99.25
PRK04435	147	hypothetical protein; Provisional	86.19

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.25  E-value=5.8e-12  Score=84.34  Aligned_cols=62  Identities=26%  Similarity=0.312  Sum_probs=49.1

Q ss_pred             hhhHHHHHHhhhCCH----HHHhhceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCcccc
Q 032133           22 IRSSGSHMGFSCYSM----EEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDV   83 (146)
Q Consensus        22 i~sH~~~LaSVLGSe----EeAk~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L   83 (146)
                      ..+|.+++++++.+.    ......++|+|...|+||+|.||++++++|+++|+|.+|.||..+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l   81 (82)
T PF05922_consen   16 FSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSL   81 (82)
T ss_dssp             HHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE
T ss_pred             HHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEec
Confidence            778888888776542    23467789999999999999999999999999999999999998775

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

>PRK04435 hypothetical protein; Provisional

Probab=86.19  E-value=0.8  Score=35.34  Aligned_cols=68  Identities=26%  Similarity=0.353  Sum_probs=44.4

Q ss_pred             EEEeeecceeccchh--------------hHHHHHHhhhCCHHHHhhceeeEeecc-eee-----eEeEeCHH------H
Q 032133            9 VHYYKTTDYVFPSIR--------------SSGSHMGFSCYSMEEAKKNMYAFSTTT-YTG-----FQCTVSEE------T   62 (146)
Q Consensus         9 ~~~~~~~~~~~~~i~--------------sH~~~LaSVLGSeEeAk~sI~ySY~~s-fnG-----FAA~LTee------e   62 (146)
                      --|||--|+|||.-+              +-..+|+.++.-..+....|+...... .+|     |.....+.      -
T Consensus        49 s~~ykykd~vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~L  128 (147)
T PRK04435         49 SAFYKYKDYVFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDEL  128 (147)
T ss_pred             HHHhcCCCeeECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHH
Confidence            358999999999633              234578888876666666776543211 234     44444333      3


Q ss_pred             HHHhhCCCCeEEEc
Q 032133           63 SEKFKGLPGVLWVL   76 (146)
Q Consensus        63 AekLs~lPGVVSVf   76 (146)
                      .++|++++||..|-
T Consensus       129 i~~L~~i~gV~~V~  142 (147)
T PRK04435        129 LEKLRNLDGVEKVE  142 (147)
T ss_pred             HHHHHcCCCcEEEE
Confidence            67899999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	99.43
3cnq_P	80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	98.97
2qtw_A	124	Proprotein convertase subtilisin/kexin type 9 Pro;	98.97
1v5i_B	76	POIA1, IA-1=serine proteinase inhibitor; protease-	98.16
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	97.02
3t41_A	471	Epidermin leader peptide processing serine protea;	96.68
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	96.44
2z30_B	65	TK-subtilisin; thermococcus kodakaraensis, hydrola	96.28
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	96.18

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P

Probab=99.43  E-value=3.2e-14  Score=103.89  Aligned_cols=61  Identities=15%  Similarity=0.105  Sum_probs=54.6

Q ss_pred             hhhHHHHHHhhhCCHHHHhhceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCcccc
Q 032133           22 IRSSGSHMGFSCYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDV   83 (146)
Q Consensus        22 i~sH~~~LaSVLGSeEeAk~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L   83 (146)
                      +.+|++||.+++++ +.+...|+|+|++.|+||+|+||++++++|+++|+|++|+||..+++
T Consensus        53 ~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~  113 (114)
T 2w2n_P           53 SERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA  113 (114)
T ss_dssp             HHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence            67899999999865 33567899999999999999999999999999999999999987654

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B

Probab=98.97  E-value=4.2e-10  Score=75.70  Aligned_cols=43  Identities=19%  Similarity=0.184  Sum_probs=40.4

Q ss_pred             hceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCccccC
Q 032133           41 KNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVK   84 (146)
Q Consensus        41 ~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L~   84 (146)
                      ..|+|+|++ |+||+|+|+++++++|+++|+|.+|.||..+++.
T Consensus        34 ~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~   76 (80)
T 3cnq_P           34 GKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRAL   76 (80)
T ss_dssp             CEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEEC
T ss_pred             CcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEe
Confidence            469999998 9999999999999999999999999999988764

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P

Probab=98.97  E-value=3.7e-10  Score=84.04  Aligned_cols=61  Identities=15%  Similarity=0.105  Sum_probs=46.8

Q ss_pred             hhhHHHHHHhhhCCHHHHhhceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCcccc
Q 032133           22 IRSSGSHMGFSCYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDV   83 (146)
Q Consensus        22 i~sH~~~LaSVLGSeEeAk~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L   83 (146)
                      +..|.++|.+++.. ...-..|.|+|++.|+||+|+||++++++|+++|+|++|.||..++.
T Consensus        63 ~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a  123 (124)
T 2qtw_A           63 SERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA  123 (124)
T ss_dssp             HHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence            45566666553210 00113699999999999999999999999999999999999987654

>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A

Probab=98.16  E-value=3.9e-06  Score=56.79  Aligned_cols=55  Identities=16%  Similarity=0.162  Sum_probs=45.2

Q ss_pred             hhhHHHHHHhhhCCHHHHhhceeeEe-ecceeeeEeEeCHHHHHHhhCC--CCeEEEcCCCcccc
Q 032133           22 IRSSGSHMGFSCYSMEEAKKNMYAFS-TTTYTGFQCTVSEETSEKFKGL--PGVLWVLPDSYIDV   83 (146)
Q Consensus        22 i~sH~~~LaSVLGSeEeAk~sI~ySY-~~sfnGFAA~LTeeeAekLs~l--PGVVSVfPd~~~~L   83 (146)
                      ++.|..++...-       ..|.|.| ...|+||+|.|++++++.|+..  |.|..|-+|...++
T Consensus        18 ~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~   75 (76)
T 1v5i_B           18 IRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA   75 (76)
T ss_dssp             HHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred             HHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence            556766665532       3589999 4899999999999999999999  78999999987654

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=97.02  E-value=0.00025  Score=65.60  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=39.2

Q ss_pred             ceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCcccc
Q 032133           42 NMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDV   83 (146)
Q Consensus        42 sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L   83 (146)
                      .|.++|++.|+||+++|+++++++|+++|+|.+|.||..+..
T Consensus       110 ~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~  151 (692)
T 2p4e_P          110 KILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA  151 (692)
T ss_dssp             EEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred             ceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecccccc
Confidence            589999999999999999999999999999999999987654

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=96.68  E-value=0.0023  Score=54.14  Aligned_cols=46  Identities=4%  Similarity=-0.017  Sum_probs=39.6

Q ss_pred             HhhceeeEeecceeeeEeEeCHHHHHHhhC-CCCeEEEcCCCccccCC
Q 032133           39 AKKNMYAFSTTTYTGFQCTVSEETSEKFKG-LPGVLWVLPDSYIDVKN   85 (146)
Q Consensus        39 Ak~sI~ySY~~sfnGFAA~LTeeeAekLs~-lPGVVSVfPd~~~~L~~   85 (146)
                      ..-.+++.|. .|+||+++|+++++++|++ +|+|.+|.|+..+.+..
T Consensus        64 ~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~  110 (471)
T 3t41_A           64 KSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITS  110 (471)
T ss_dssp             HTCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCC
T ss_pred             CCCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceecccc
Confidence            3345788884 5999999999999999999 99999999998877643

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=96.44  E-value=0.0019  Score=56.99  Aligned_cols=44  Identities=11%  Similarity=0.101  Sum_probs=39.0

Q ss_pred             hceeeEeecceeeeEeEeCHHHHHHh-----------hCCCCeEEEcCCCccccCC
Q 032133           41 KNMYAFSTTTYTGFQCTVSEETSEKF-----------KGLPGVLWVLPDSYIDVKN   85 (146)
Q Consensus        41 ~sI~ySY~~sfnGFAA~LTeeeAekL-----------s~lPGVVSVfPd~~~~L~~   85 (146)
                      ..+.|.|+ .|+||+++|+++++++|           +++|+|.+|.||..+++..
T Consensus        60 ~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~  114 (539)
T 3afg_A           60 AKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAV  114 (539)
T ss_dssp             CEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-
T ss_pred             CeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccC
Confidence            46889996 69999999999999999           8999999999999887753

>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B

Probab=96.28  E-value=0.003  Score=41.39  Aligned_cols=42  Identities=19%  Similarity=0.105  Sum_probs=37.0

Q ss_pred             HhhceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCcc
Q 032133           39 AKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYI   81 (146)
Q Consensus        39 Ak~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~   81 (146)
                      .--.|+|.+. .+++++|.|+++.+++|+++|||..|-+|...
T Consensus        21 ~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v   62 (65)
T 2z30_B           21 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQA   62 (65)
T ss_dssp             GTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEE
T ss_pred             CCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEE
Confidence            3356889996 59999999999999999999999999999764

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=96.18  E-value=0.0025  Score=53.35  Aligned_cols=43  Identities=19%  Similarity=0.093  Sum_probs=39.1

Q ss_pred             hceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCccccC
Q 032133           41 KNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVK   84 (146)
Q Consensus        41 ~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L~   84 (146)
                      ..+++.|.. |+||+++|+++++++|+++|+|.+|.|+..+.+.
T Consensus        24 ~~v~~~~~~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~   66 (395)
T 2z2z_A           24 GHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLL   66 (395)
T ss_dssp             CEEEEECSS-SSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEEC
T ss_pred             CEEEEEecc-CCEEEEEECHHHHHHHHcCCCceEEEEeeeeccc
Confidence            458899975 9999999999999999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1scjb_	71	Subtilisin prosegment {Bacillus subtilis [TaxId: 1	98.09
d1v5ib1	72	Proteinase A inhibitor 1, POIA1 {Oyster mushroom (	98.05

>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Subtilisin prosegment
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=2.2e-06  Score=56.49  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=37.0

Q ss_pred             hceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCccc
Q 032133           41 KNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYID   82 (146)
Q Consensus        41 ~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~   82 (146)
                      ..|.+.|. .|+||+|.|+++++++|++.|+|..|-+|...+
T Consensus        29 g~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~   69 (71)
T d1scjb_          29 GKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAH   69 (71)
T ss_dssp             CEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEE
T ss_pred             CeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEE
Confidence            35889997 699999999999999999999999999998654

>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Proteinase A inhibitor 1, POIA1
species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]

Probab=98.05  E-value=3e-06  Score=55.83  Aligned_cols=51  Identities=20%  Similarity=0.266  Sum_probs=39.4

Q ss_pred             hhhHHHHHHhhhCCHHHHhhceeeEee-cceeeeEeEeCHHHHHHhhCCCC--eEEEcCCC
Q 032133           22 IRSSGSHMGFSCYSMEEAKKNMYAFST-TTYTGFQCTVSEETSEKFKGLPG--VLWVLPDS   79 (146)
Q Consensus        22 i~sH~~~LaSVLGSeEeAk~sI~ySY~-~sfnGFAA~LTeeeAekLs~lPG--VVSVfPd~   79 (146)
                      ++.|..++...-       ..+.+.|. +.|+||+|+|++++++.|+.+|+  |-.|=+|.
T Consensus        18 ~~~~~~~~~~~~-------~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~   71 (72)
T d1v5ib1          18 IRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH   71 (72)
T ss_dssp             HHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred             HHHHHHHHHhcC-------CceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence            455555555432       34677777 79999999999999999999876  99887774