Citrus Sinensis ID: 032134

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEVSHYFDILSIFLGLIKA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEccccccEEEcccccccccccEEEEEcccccEEccccccEEEEEccccccEEEEEEEccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtavsnslvlpknprvelssgsflkpldlclgsntpanlsfspnhqwkvqlsssrrrpfkvhasnseggransagffVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEVSHYFDILSIFLGLIKA
Flexible Loop (DISEMBL)
mtavsnslvlpknprveLSSGSFLKPLDLCLGSNtpanlsfspnHQWKVQLSSSRRRPFKVhasnseggranSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEVSHYFDILSIFLGLIKA
Low Complexity Region (SEG)
MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAgffvggfvlggiivgtlgCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEVSHYFDILSIFLGLIKA
Disordered region (IsUnstruct)
**********************FLKPLDLCLG*****************************************AGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEVSHYFDILSIFLGLI**
Disordered Region (DISOPRED)
****************************************************************************FVGGFVLGGIIVGTLGCVYAPQISKALAG*AAD****MRKLPKFIYDEEKALEVSHYFDILSIFLGLIKA
Disordered Region (DISEMBL)
MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEVSHYFDILSIFLGLIKA
Disordered Region (DISPRO)
******SLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEVSHYFDILSIFLGLIKA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALEVSHYFDILSIFLGLIKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
225457608	171	PREDICTED: uncharacterized protein LOC10	0.821	0.701	0.651	6e-36
449455633	169	PREDICTED: uncharacterized protein LOC10	0.924	0.798	0.575	5e-34
255539284	166	conserved hypothetical protein [Ricinus	0.828	0.728	0.641	6e-33
351725087	163	uncharacterized protein LOC100306344 [Gl	0.732	0.656	0.627	2e-29
224094252	164	predicted protein [Populus trichocarpa]	0.815	0.725	0.561	8e-29
388518649	165	unknown [Lotus japonicus]	0.801	0.709	0.582	2e-27
225438434	162	PREDICTED: uncharacterized protein LOC10	0.787	0.709	0.560	3e-27
356517227	163	PREDICTED: uncharacterized protein LOC10	0.815	0.730	0.542	4e-27
388514427	139	unknown [Lotus japonicus]	0.643	0.676	0.670	7e-27
255633142	228	unknown [Glycine max]	0.815	0.521	0.542	8e-27

>gi|225457608|ref|XP_002273917.1| PREDICTED: uncharacterized protein LOC100242710 [Vitis vinifera] gi|297745580|emb|CBI40745.3| unnamed protein product [Vitis vinifera]

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/129 (65%), Positives = 96/129 (74%), Gaps = 9/129 (6%)

Query: 1   MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFK 60
           M A SNSLV         SSG+ LKP+D  LGS  P NLSF+PNH  KVQ  +S+R    
Sbjct: 1   MAAFSNSLV-------HFSSGACLKPVDRYLGSLGPTNLSFNPNHVGKVQFFTSKRALTV 53

Query: 61  VHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKF 120
             A + +GG+ ++A FF+GGFVLGG+IVGTLGCVYAPQISKALAG  ADRKDLMRKLPKF
Sbjct: 54  QAAYSDDGGKQSNANFFLGGFVLGGLIVGTLGCVYAPQISKALAG--ADRKDLMRKLPKF 111

Query: 121 IYDEEKALE 129
           IYDEEKALE
Sbjct: 112 IYDEEKALE 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455633|ref|XP_004145557.1| PREDICTED: uncharacterized protein LOC101206784 [Cucumis sativus] gi|449485109|ref|XP_004157072.1| PREDICTED: uncharacterized LOC101206784 [Cucumis sativus]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 100/139 (71%), Gaps = 4/139 (2%)

Query: 1   MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFK 60
           M A+SNSLVL K+P+++L+ GS LK +D  LGS +P +L  SP      +LS+SRR    
Sbjct: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRR-SLS 59

Query: 61  VHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKF 120
           V A+  + GR+ S G F+GGFVLGG+IVGTLGCVYAPQISK +AG   DRK+LM+KLPKF
Sbjct: 60  VQAAYRDDGRS-STGIFIGGFVLGGLIVGTLGCVYAPQISKVIAG--TDRKELMKKLPKF 116

Query: 121 IYDEEKALEVSHYFDILSI 139
           IYDEEKALE +     L I
Sbjct: 117 IYDEEKALEKTRKMLALKI 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539284|ref|XP_002510707.1| conserved hypothetical protein [Ricinus communis] gi|223551408|gb|EEF52894.1| conserved hypothetical protein [Ricinus communis]

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/131 (64%), Positives = 95/131 (72%), Gaps = 10/131 (7%)

Query: 1   MTAVSNSLVLPKNP--RVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRP 58
           MTA+SNSL L +NP   V+LS+GS  K L     +  P  LSFS N   KVQL++SRR  
Sbjct: 1   MTAISNSLALTRNPVGTVQLSAGSLGKSLQ----NVGPTKLSFSLNSPGKVQLTTSRR-S 55

Query: 59  FKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLP 118
             V A+ S+ GR +S   FVGGFVLGG+IVG LGCVYAPQISKALAG   DRKDLMRKLP
Sbjct: 56  LTVRAA-SDDGRPSSGSIFVGGFVLGGLIVGALGCVYAPQISKALAG--TDRKDLMRKLP 112

Query: 119 KFIYDEEKALE 129
           KFIYDEEKALE
Sbjct: 113 KFIYDEEKALE 123

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725087|ref|NP_001237336.1| uncharacterized protein LOC100306344 [Glycine max] gi|255628263|gb|ACU14476.1| unknown [Glycine max]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 81/110 (73%), Gaps = 3/110 (2%)

Query: 20  SGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVG 79
           S S +  +D  L    P N S + N Q  +Q S +RR P  + A+ S+GGR +SA  FVG
Sbjct: 13  SASSINKVDHSLVKIKPYNFSLNLNRQGTMQTSLTRR-PLTIQATYSDGGRPSSASVFVG 71

Query: 80  GFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDEEKALE 129
           GF+LGG+IVGTLGCVYAPQISKALAG  ADRK+LMRKLPKFIYDEEKALE
Sbjct: 72  GFLLGGLIVGTLGCVYAPQISKALAG--ADRKELMRKLPKFIYDEEKALE 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094252|ref|XP_002310110.1| predicted protein [Populus trichocarpa] gi|222853013|gb|EEE90560.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/130 (56%), Positives = 87/130 (66%), Gaps = 11/130 (8%)

Query: 1   MTAVSNSLVLPKNPRVELSS-GSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPF 59
           MTA+S SL+    P+   SS GS LKP D CL    P NLS            ++ ++  
Sbjct: 1   MTALSTSLLSITTPQAHFSSAGSSLKPKDQCLICVRPGNLSSKGK-------PTTHKKSL 53

Query: 60  KVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPK 119
            + AS   GG ++ AG F+GGF+LGG++ GTLGCVYAPQISKALAG  ADRKDLMRKLPK
Sbjct: 54  TIQASGERGG-SSGAGIFIGGFILGGMVAGTLGCVYAPQISKALAG--ADRKDLMRKLPK 110

Query: 120 FIYDEEKALE 129
           FIYDEEKALE
Sbjct: 111 FIYDEEKALE 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518649|gb|AFK47386.1| unknown [Lotus japonicus]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 88/127 (69%), Gaps = 10/127 (7%)

Query: 3   AVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVH 62
           AVS+S +L K       S S +  +D       P+ LS + N Q + QLS +RR P  V 
Sbjct: 4   AVSSSFILTK-------SVSSINKVDHSRVMIKPSGLSQNLNCQGRTQLSLTRR-PLTVQ 55

Query: 63  ASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIY 122
           A+ S+GGR + A  FVGGFVLGG+IVGTLG VYAPQISKALAG  AD+K+LMRKLPKFIY
Sbjct: 56  ATYSDGGRPSGASVFVGGFVLGGLIVGTLGAVYAPQISKALAG--ADKKELMRKLPKFIY 113

Query: 123 DEEKALE 129
           DEEKALE
Sbjct: 114 DEEKALE 120

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438434|ref|XP_002276709.1| PREDICTED: uncharacterized protein LOC100250729 [Vitis vinifera]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 85/132 (64%), Gaps = 17/132 (12%)

Query: 1   MTAVSNSLVLPKNPRVELSSGSFLKPLD---LCLGSNTPANLSFSPNHQWKVQLSSSRRR 57
           M+A SN LV  +NPR +   GS LK +D   L L S +  N     N             
Sbjct: 1   MSAFSNPLVSIRNPRTQFLYGSSLKLVDQSNLSLCSTSAGNTKHLANKSL---------- 50

Query: 58  PFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKL 117
              + A+  +GGR +SA  FVGGF+LGGI+VGTLGCVYAPQISKALAG  ADRKDLMRKL
Sbjct: 51  -LTIRAAG-DGGRPSSASIFVGGFILGGIVVGTLGCVYAPQISKALAG--ADRKDLMRKL 106

Query: 118 PKFIYDEEKALE 129
           PKFIYDEEKALE
Sbjct: 107 PKFIYDEEKALE 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517227|ref|XP_003527290.1| PREDICTED: uncharacterized protein LOC100527765 [Glycine max]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 87/129 (67%), Gaps = 10/129 (7%)

Query: 1   MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFK 60
           M AV ++  L K       S   +  LD  L    P + S + N   +++ S +RR P  
Sbjct: 1   MAAVPSTFALTK-------SALSINKLDHSLVKIKPYSFSLNLNRLGRMETSLTRR-PLT 52

Query: 61  VHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKF 120
           + A+ S+GGR +SA  FVGGF+LGG+IVGTLGCVYAPQISKA+AG  ADRK+LMRKLPKF
Sbjct: 53  IQATYSDGGRPSSASVFVGGFLLGGLIVGTLGCVYAPQISKAIAG--ADRKELMRKLPKF 110

Query: 121 IYDEEKALE 129
           IYDEEKALE
Sbjct: 111 IYDEEKALE 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514427|gb|AFK45275.1| unknown [Lotus japonicus]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 76/97 (78%), Gaps = 3/97 (3%)

Query: 36  PANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVY 95
           P+ LS + N Q + QLS +RR P  V A+ S+GGR + A  FVGGFVLGG+IVGTLG VY
Sbjct: 4   PSGLSQNLNCQGRTQLSLTRR-PLTVQATYSDGGRPSGASVFVGGFVLGGLIVGTLGAVY 62

Query: 96  APQISKALAGAAADRKDLMRKLPKFIYDEEKALEVSH 132
           APQISKALAG  AD+K+LMRKLPKFIYDEEKALE + 
Sbjct: 63  APQISKALAG--ADKKELMRKLPKFIYDEEKALEKTR 97

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633142|gb|ACU16926.1| unknown [Glycine max]

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 87/129 (67%), Gaps = 10/129 (7%)

Query: 1   MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFK 60
           M AV ++  L K       S   +  LD  L    P + S + N   +++ S +RR P  
Sbjct: 1   MAAVPSTFALTK-------SALSINKLDHSLVKIRPYSFSLNLNRLGRMETSLTRR-PLT 52

Query: 61  VHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKF 120
           + A+ S+GGR +SA  FVGGF+LGG+IVGTLGCVYAPQISKA+AG  ADRK+LMRKLPKF
Sbjct: 53  IQATYSDGGRPSSASVFVGGFLLGGLIVGTLGCVYAPQISKAIAG--ADRKELMRKLPKF 110

Query: 121 IYDEEKALE 129
           IYDEEKALE
Sbjct: 111 IYDEEKALE 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2009859	168	AT1G42960 "AT1G42960" [Arabido	0.801	0.696	0.440	4.1e-17

TAIR|locus:2009859 AT1G42960 "AT1G42960" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 56/127 (44%), Positives = 71/127 (55%)

Query:     5 SNSLVLPKNP-RVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSR-RRPFKVH 62
             S SL LPKN  ++  SSG  L P   C+      ++SF  NH  K+ +S+ R +R   + 
Sbjct:     6 STSLSLPKNSHQLHPSSGFSLNPNARCV------SVSFGLNHSNKLHISAPRTKRILTIQ 59

Query:    63 ASNSEGGRANSAXXXXXXXXXXXXXXXXXXCVYAPQISKALAGAAADRKDLMRKLPKFIY 122
             ++  +   + S                   CVYAPQISKA+AGA  DRKDLMRKLPKFIY
Sbjct:    60 SAYRDDDGSGSTGLFVGGFILGGLIVGALGCVYAPQISKAIAGA--DRKDLMRKLPKFIY 117

Query:   123 DEEKALE 129
             DEEKALE
Sbjct:   118 DEEKALE 124


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      146       128   0.00091  102 3  11 22  0.39    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  124 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.91u 0.12s 11.03t   Elapsed:  00:00:01
  Total cpu time:  10.91u 0.12s 11.03t   Elapsed:  00:00:01
  Start:  Fri May 10 17:12:37 2013   End:  Fri May 10 17:12:38 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002910001 SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (171 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PF12732	74	YtxH: YtxH-like protein; InterPro: IPR024623 This	96.66
COG4980	115	GvpP Gas vesicle protein [General function predict	93.04

>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria

Probab=96.66  E-value=0.00048  Score=46.87  Aligned_cols=28  Identities=29%  Similarity=0.526  Sum_probs=24.3

Q ss_pred             eeehhhhhhhhhhhhhhhhhhhhHHHHh
Q 032134           77 FVGGFVLGGIIVGTLGCVYAPQISKALA  104 (146)
Q Consensus        77 Fv~GFlLGGaVfGtLGyvfAPQIskaL~  104 (146)
                      |+.||++|+++-.++|++|||+--+-+-
T Consensus         1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R   28 (74)
T PF12732_consen    1 FLLGFLAGAAAGAAAGLLFAPKSGKETR   28 (74)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence            8899999999999999999998555443

Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.

>COG4980 GvpP Gas vesicle protein [General function prediction only]

Probab=93.04  E-value=0.035  Score=42.61  Aligned_cols=33  Identities=30%  Similarity=0.507  Sum_probs=29.3

Q ss_pred             CCCceeehhhhhhhhhhhhhhhhhhhhHHHHhc
Q 032134           73 SAGFFVGGFVLGGIIVGTLGCVYAPQISKALAG  105 (146)
Q Consensus        73 ~gg~Fv~GFlLGGaVfGtLGyvfAPQIskaL~~  105 (146)
                      ++++|+.|.++||+|=.+.+-+|||.-.|-|-.
T Consensus         3 ~~~~~l~G~liGgiiGa~aaLL~AP~sGkelR~   35 (115)
T COG4980           3 KGKDFLFGILIGGIIGAAAALLFAPKSGKELRK   35 (115)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Confidence            568999999999999999999999998877763

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00