Citrus Sinensis ID: 032139

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccccccccccccccccccccEEccccccccccccccccccccccEEccEEcHHHHHHHccHHHHHHHccccccEEEcEEcccEEEEccccccccccEEEEEccccHHHHHHHHHcccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEccccccccccccccccccccccccccEccccccccccccccHHHHHHHcccccccEEEHHHHHHcccHHHHHHHccccccEEEEHHcccEEEEccccccccccEEEEEHHccHHHHHHHHHcccEEEEEc
Coil and Loop (DISEMBL)
mttrfkknrkkrghvsaghgrigkhrkhpggrgnaggmhhhrilfdkyhpgffgkvGMRYFHKLrnkfhcpivnidklwsmvpqdvkakaskdnvpmidvtqfgyfkvlgkgvlpenqpvVVKAKLVSKTAEKKIKEAggavvlta
Flexible Loop (DISEMBL)
mttrfkknrkkrghvsaghgrigkhrkhpggrgNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAkaskdnvpmIDVTQFGYFKVLGkgvlpenqpvVVKAKLVSKTaekkikeaggavvlta
Low Complexity Region (SEG)
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA
Disordered region (IsUnstruct)
*************************************MHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLV*******************
Disordered Region (DISOPRED)
***********************************************Y****FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA
Disordered Region (DISEMBL)
**********************************AGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA
Disordered Region (DISPRO)
**************************************HHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
P49637	146	60S ribosomal protein L27	yes	no	1.0	1.0	0.904	2e-73
Q9LR33	146	60S ribosomal protein L27	yes	no	1.0	1.0	0.890	7e-72
P48160	148	60S ribosomal protein L27	yes	no	0.993	0.979	0.624	5e-51
Q56K03	148	60S ribosomal protein L27	yes	no	0.993	0.979	0.651	3e-50
P14115	148	60S ribosomal protein L27	yes	no	0.993	0.979	0.651	3e-50
P18445	148	60S ribosomal protein L27	yes	no	0.993	0.979	0.651	3e-50
Q4R723	148	60S ribosomal protein L27	N/A	no	0.993	0.979	0.644	6e-50
O01358	145	60S ribosomal protein L27	N/A	no	0.993	1.0	0.643	7e-50
Q5REY2	148	60S ribosomal protein L27	yes	no	0.993	0.979	0.637	8e-50
P46776	148	60S ribosomal protein L27	yes	no	0.993	0.979	0.637	8e-50

>sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2

 Score =  273 bits (699), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/146 (90%), Positives = 142/146 (97%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKF CPIVN+DKLWS+VP+DVKAK++KDNVP+IDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LR33|R27A2_ARATH 60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1

 Score =  268 bits (686), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 130/146 (89%), Positives = 139/146 (95%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKF CPIVN+DKLWS+VP+DVKAK+SKDNVP+IDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

Arabidopsis thaliana (taxid: 3702)

>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1

 Score =  199 bits (506), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 119/149 (79%), Gaps = 4/149 (2%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M TRF K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPG+FGK+GMR+
Sbjct: 1   MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPEN 117
           FH LRN++HCP V+++K+W++VP+ V+   +  N    P++DVTQ G+FKVLG G+LP  
Sbjct: 61  FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-T 119

Query: 118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           QP++VKA+  SK AEKKIK  GGA +L A
Sbjct: 120 QPIIVKARYFSKVAEKKIKAVGGACILVA 148

Dictyostelium discoideum (taxid: 44689)

>sp|Q56K03|RL27A_BOVIN 60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3

 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 97/149 (65%), Positives = 117/149 (78%), Gaps = 4/149 (2%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPEN 117
           +H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 119

Query: 118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

Bos taurus (taxid: 9913)

>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=5

 Score =  196 bits (499), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 97/149 (65%), Positives = 117/149 (78%), Gaps = 4/149 (2%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPEN 117
           +H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK- 119

Query: 118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

Mus musculus (taxid: 10090)

>sp|P18445|RL27A_RAT 60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3

 Score =  196 bits (498), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 97/149 (65%), Positives = 117/149 (78%), Gaps = 4/149 (2%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPEN 117
           +H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK- 119

Query: 118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

Rattus norvegicus (taxid: 10116)

>sp|Q4R723|RL27A_MACFA 60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2 SV=1

 Score =  195 bits (496), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 96/149 (64%), Positives = 117/149 (78%), Gaps = 4/149 (2%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGG+HHHRI FDKYHPG+FGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPEN 117
           +H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 119

Query: 118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

Macaca fascicularis (taxid: 9541)

>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3 SV=1

 Score =  195 bits (496), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 94/146 (64%), Positives = 112/146 (76%), Gaps = 1/146 (0%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M    +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKYHPG+FGKVGMR 
Sbjct: 1   MAHSLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FH  +N  +CP VN+D+LW++VP++ K K S +  P+ID  + GYFKVLGKG+LP+ QP+
Sbjct: 61  FHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPL 119

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           +VKAK  S  AE KIK AGGA +L A
Sbjct: 120 IVKAKFFSHEAENKIKAAGGACILVA 145

Oscheius brevesophaga (taxid: 57871)

>sp|Q5REY2|RL27A_PONAB 60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3

 Score =  195 bits (496), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 95/149 (63%), Positives = 117/149 (78%), Gaps = 4/149 (2%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGG+HHHRI FDKYHPG+FGKVGM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPEN 117
           +H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 119

Query: 118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148

Pongo abelii (taxid: 9601)

>sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2

 Score =  195 bits (496), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 95/149 (63%), Positives = 117/149 (78%), Gaps = 4/149 (2%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGG+HHHRI FDKYHPG+FGKVGM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPEN 117
           +H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 119

Query: 118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
224138294	146	predicted protein [Populus trichocarpa]	1.0	1.0	0.952	5e-75
224107783	146	predicted protein [Populus trichocarpa]	1.0	1.0	0.945	7e-75
209967449	146	60S ribosomal protein L27A [Vernicia for	1.0	1.0	0.945	8e-75
255574015	146	60S ribosomal protein L27a, putative [Ri	1.0	1.0	0.931	1e-74
118481898	146	unknown [Populus trichocarpa]	1.0	1.0	0.938	2e-74
449434971	146	PREDICTED: 60S ribosomal protein L27a-3-	1.0	1.0	0.917	3e-74
224100157	146	predicted protein [Populus trichocarpa]	1.0	1.0	0.931	4e-74
224091453	146	predicted protein [Populus trichocarpa]	1.0	1.0	0.931	5e-74
255540537	146	60S ribosomal protein L27a, putative [Ri	1.0	1.0	0.924	9e-74
449469566	146	PREDICTED: 60S ribosomal protein L27a-3-	1.0	1.0	0.924	2e-73

>gi|224138294|ref|XP_002322778.1| predicted protein [Populus trichocarpa] gi|118483220|gb|ABK93513.1| unknown [Populus trichocarpa] gi|118484573|gb|ABK94160.1| unknown [Populus trichocarpa] gi|222867408|gb|EEF04539.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 139/146 (95%), Positives = 142/146 (97%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKFHCPIVNIDKLWSMVPQDVK KA+KD VPMIDVTQFGYFKVLGKGVLPE QP+
Sbjct: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKDKATKDTVPMIDVTQFGYFKVLGKGVLPEKQPI 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKLVSK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107783|ref|XP_002314599.1| predicted protein [Populus trichocarpa] gi|118481692|gb|ABK92786.1| unknown [Populus trichocarpa] gi|222863639|gb|EEF00770.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (727), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 138/146 (94%), Positives = 142/146 (97%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKFHCPIVNIDKLWSMVPQDVK KA+KD VPMIDVTQFGYFKVLGKGVLPE QP+
Sbjct: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKDKATKDTVPMIDVTQFGYFKVLGKGVLPEKQPI 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKEAGGAVVLTA 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209967449|gb|ACJ02353.1| 60S ribosomal protein L27A [Vernicia fordii]

 Score =  284 bits (727), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 138/146 (94%), Positives = 143/146 (97%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKF+CPIVNIDKLWSMVPQ+VK KASKDNVPM+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQEVKDKASKDNVPMLDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKLVSK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

Source: Vernicia fordii

Species: Vernicia fordii

Genus: Vernicia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574015|ref|XP_002527925.1| 60S ribosomal protein L27a, putative [Ricinus communis] gi|223532700|gb|EEF34482.1| 60S ribosomal protein L27a, putative [Ricinus communis]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 136/146 (93%), Positives = 144/146 (98%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKF+CPIVNIDKLWSM+P+DVK KA+KDNVP++DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMIPEDVKDKANKDNVPLLDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKLVSK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481898|gb|ABK92884.1| unknown [Populus trichocarpa]

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/146 (93%), Positives = 142/146 (97%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKF+CPIVNIDKLWSMVPQDVK KA+KD VPMIDVTQFGYFKVLGKGVLPE QP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQDVKDKATKDTVPMIDVTQFGYFKVLGKGVLPEKQPI 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKEAGGAVVLTA 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434971|ref|XP_004135269.1| PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis sativus] gi|449521585|ref|XP_004167810.1| PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis sativus]

 Score =  282 bits (721), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 134/146 (91%), Positives = 144/146 (98%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKF+CPIVN+DK+WS++PQ+VK KASKDNVP++DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKLVSK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100157|ref|XP_002311766.1| predicted protein [Populus trichocarpa] gi|222851586|gb|EEE89133.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 136/146 (93%), Positives = 142/146 (97%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKF+CPIVNIDKLWSMVPQDVK KA++D VPMIDVTQFGYFKVLGKGVLPE QP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQDVKDKATEDTVPMIDVTQFGYFKVLGKGVLPEKQPI 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKEAGGAVVLTA 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091453|ref|XP_002309256.1| predicted protein [Populus trichocarpa] gi|222855232|gb|EEE92779.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 136/146 (93%), Positives = 142/146 (97%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKF+CPIVNIDKLWSMVPQDVK KA+KD VPMIDVTQFGYFKVLGKGVLP+ QP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQDVKDKATKDTVPMIDVTQFGYFKVLGKGVLPDKQPI 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKEAGGAVVLTA 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540537|ref|XP_002511333.1| 60S ribosomal protein L27a, putative [Ricinus communis] gi|223550448|gb|EEF51935.1| 60S ribosomal protein L27a, putative [Ricinus communis]

 Score =  280 bits (717), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 135/146 (92%), Positives = 142/146 (97%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKF+CPIVNIDKLWSMVP+D K KASKDNVPM+DVT+FGYFKVLGKGVLPEN+P+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPEDAKEKASKDNVPMVDVTEFGYFKVLGKGVLPENKPI 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKLVSK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469566|ref|XP_004152490.1| PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis sativus] gi|449487742|ref|XP_004157778.1| PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis sativus]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/146 (92%), Positives = 143/146 (97%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FHKLRNKF+CPIVN+DKLWS+VPQ+VK KASKDNVP+IDVTQFGYFKVLGKGVLPEN+PV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENKPV 120

Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKL+SK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2033637	146	AT1G70600 [Arabidopsis thalian	1.0	1.0	0.904	5.3e-72
TAIR|locus:2028080	146	RPL27AB [Arabidopsis thaliana	1.0	1.0	0.890	1.6e-70
GENEDB_PFALCIPARUM|PFF0885w	148	PFF0885w "60S ribosomal protei	1.0	0.986	0.662	1.3e-52
UNIPROTKB|C6KT23	148	PFF0885w "60S ribosomal protei	1.0	0.986	0.662	1.3e-52
DICTYBASE|DDB_G0292388	148	rpl27a "S60 ribosomal protein	0.993	0.979	0.637	3.1e-51
WB|WBGene00021350	145	Y37E3.8 [Caenorhabditis elegan	0.993	1.0	0.657	1.1e-50
UNIPROTKB|Q56K03	148	RPL27A "60S ribosomal protein	0.993	0.979	0.651	1.7e-50
UNIPROTKB|E2RI34	148	RPL27A "Uncharacterized protei	0.993	0.979	0.651	1.7e-50
RGD|1309771	148	Rpl27a "ribosomal protein L27a	0.993	0.979	0.651	1.7e-50
UNIPROTKB|G1K1B4	147	RPL27A "60S ribosomal protein	0.979	0.972	0.653	4.6e-50

TAIR|locus:2033637 AT1G70600 [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 132/146 (90%), Positives = 142/146 (97%)

Query:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
             MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query:    61 FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
             FHKLRNKF CPIVN+DKLWS+VP+DVKAK++KDNVP+IDVTQ G+FKVLGKG LPEN+P 
Sbjct:    61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query:   121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
             VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2028080 RPL27AB [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 130/146 (89%), Positives = 139/146 (95%)

Query:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
             M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct:     1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query:    61 FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
             FHKLRNKF CPIVN+DKLWS+VP+DVKAK+SKDNVP+IDVTQ G+FKVLGKG LPEN+P 
Sbjct:    61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query:   121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
             VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS;TAS

GO:0015934 "large ribosomal subunit" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GENEDB_PFALCIPARUM|PFF0885w PFF0885w "60S ribosomal protein L27a, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 98/148 (66%), Positives = 118/148 (79%)

Query:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
             M TRFKKNRKKRGHVSAGHGR+GKHRKHPGGRG AGG+HH RI FDKYHPG+FGKVGMR+
Sbjct:     1 MATRFKKNRKKRGHVSAGHGRVGKHRKHPGGRGKAGGLHHMRINFDKYHPGYFGKVGMRH 60

Query:    61 FHKLRNKFHCPIVNIDKLWSMVPQDVKAKAS--KDNVPMIDVTQFGYFKVLGKGVLPENQ 118
              + L+N+ +CP +N+DKLW ++P++ K + S  KD  P+IDVT+ GYFKVLG G L  NQ
Sbjct:    61 LNLLKNRTYCPTINVDKLWGLLPEEKKKEFSENKDIAPVIDVTRKGYFKVLGNGKLKHNQ 120

Query:   119 PVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
             P+VVKA+  S  AEKKIK  GG  +L A
Sbjct:   121 PIVVKARYFSSVAEKKIKAVGGQCILVA 148

GO:0015934 "large ribosomal subunit" evidence=ISS

UNIPROTKB|C6KT23 PFF0885w "60S ribosomal protein L27a, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 98/148 (66%), Positives = 118/148 (79%)

Query:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
             M TRFKKNRKKRGHVSAGHGR+GKHRKHPGGRG AGG+HH RI FDKYHPG+FGKVGMR+
Sbjct:     1 MATRFKKNRKKRGHVSAGHGRVGKHRKHPGGRGKAGGLHHMRINFDKYHPGYFGKVGMRH 60

Query:    61 FHKLRNKFHCPIVNIDKLWSMVPQDVKAKAS--KDNVPMIDVTQFGYFKVLGKGVLPENQ 118
              + L+N+ +CP +N+DKLW ++P++ K + S  KD  P+IDVT+ GYFKVLG G L  NQ
Sbjct:    61 LNLLKNRTYCPTINVDKLWGLLPEEKKKEFSENKDIAPVIDVTRKGYFKVLGNGKLKHNQ 120

Query:   119 PVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
             P+VVKA+  S  AEKKIK  GG  +L A
Sbjct:   121 PIVVKARYFSSVAEKKIKAVGGQCILVA 148

GO:0015934 "large ribosomal subunit" evidence=ISS

DICTYBASE|DDB_G0292388 rpl27a "S60 ribosomal protein L27a" [Dictyostelium discoideum (taxid:44689)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 95/149 (63%), Positives = 123/149 (82%)

Query:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
             M TRF K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPG+FGK+GMR+
Sbjct:     1 MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60

Query:    61 FHKLRNKFHCPIVNIDKLWSMVPQDV-KAKASKDN--VPMIDVTQFGYFKVLGKGVLPEN 117
             FH LRN++HCP V+++K+W++VP+ V K+ A+K++   P++DVTQ G+FKVLG G+LP  
Sbjct:    61 FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-T 119

Query:   118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
             QP++VKA+  SK AEKKIK  GGA +L A
Sbjct:   120 QPIIVKARYFSKVAEKKIKAVGGACILVA 148

GO:0006412 "translation" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00021350 Y37E3.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 96/146 (65%), Positives = 116/146 (79%)

Query:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
             M    +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKYHPG+FGKVGMR 
Sbjct:     1 MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query:    61 FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
             FH  +N+ +CP VN+++LWS+VPQ+V+ KA+    P+ID T+ GYFKVLGKG+LPE  P+
Sbjct:    61 FHLNKNQHYCPTVNVERLWSLVPQEVRDKATGGKSPVIDCTKLGYFKVLGKGLLPET-PL 119

Query:   121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
             +VKA+  S  AE+KIK+AGGA VL A
Sbjct:   120 IVKARFFSHEAEQKIKKAGGACVLVA 145

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|Q56K03 RPL27A "60S ribosomal protein L27a" [Bos taurus (taxid:9913)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 97/149 (65%), Positives = 117/149 (78%)

Query:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
             M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR+
Sbjct:     1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query:    61 FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPEN 117
             +H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct:    61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 119

Query:   118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
             QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RI34 RPL27A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 97/149 (65%), Positives = 117/149 (78%)

Query:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
             M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR+
Sbjct:     1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query:    61 FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPEN 117
             +H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct:    61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 119

Query:   118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
             QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1309771 Rpl27a "ribosomal protein L27a" [Rattus norvegicus (taxid:10116)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 97/149 (65%), Positives = 117/149 (78%)

Query:     1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
             M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR+
Sbjct:     1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query:    61 FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPEN 117
             +H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct:    61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK- 119

Query:   118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
             QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0022626 "cytosolic ribosome" evidence=ISO

UNIPROTKB|G1K1B4 RPL27A "60S ribosomal protein L27a" [Bos taurus (taxid:9913)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 96/147 (65%), Positives = 116/147 (78%)

Query:     3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFH 62
             +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGMR++H
Sbjct:     2 SRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYH 61

Query:    63 KLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQP 119
               RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QP
Sbjct:    62 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QP 120

Query:   120 VVVKAKLVSKTAEKKIKEAGGAVVLTA 146
             V+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   121 VIVKAKFFSRRAEEKIKGVGGACVLVA 147

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BI14	R27A3_ENTHI	No assigned EC number	0.5579	0.9109	0.8926	N/A	no
A3DNC9	RL15_STAMF	No assigned EC number	0.3582	0.8493	0.8157	yes	no
A1RT57	RL15_PYRIL	No assigned EC number	0.3267	0.9383	0.8782	yes	no
Q4R723	RL27A_MACFA	No assigned EC number	0.6442	0.9931	0.9797	N/A	no
Q2NFX9	RL15_METST	No assigned EC number	0.3605	0.9109	0.9172	yes	no
A5UL66	RL15_METS3	No assigned EC number	0.3537	0.9520	0.9586	yes	no
P47830	RL27A_XENLA	No assigned EC number	0.6241	0.9931	0.9797	N/A	no
P14032	RL15_METVA	No assigned EC number	0.3379	0.9520	0.9720	yes	no
P36585	RL28A_SCHPO	No assigned EC number	0.5973	0.9931	0.9797	yes	no
P14115	RL27A_MOUSE	No assigned EC number	0.6510	0.9931	0.9797	yes	no
B8D5U8	RL15_DESK1	No assigned EC number	0.3356	0.9246	0.8709	yes	no
Q5R1X0	RL27A_PANTR	No assigned EC number	0.6308	0.9931	0.9797	yes	no
O01358	RL27A_OSCBR	No assigned EC number	0.6438	0.9931	1.0	N/A	no
A6UQ66	RL15_METVS	No assigned EC number	0.3379	0.9520	0.9720	yes	no
A4WM07	RL15_PYRAR	No assigned EC number	0.3312	0.9657	0.9096	yes	no
P49637	R27A3_ARATH	No assigned EC number	0.9041	1.0	1.0	yes	no
A6VH07	RL15_METM7	No assigned EC number	0.3448	0.9520	0.9720	yes	no
P08978	RL28_NEUCR	No assigned EC number	0.6133	0.9931	0.9731	N/A	no
Q9BH80	R27A2_ENTHI	No assigned EC number	0.5652	0.9109	0.8926	N/A	no
O62581	RL27A_ENCCU	No assigned EC number	0.4421	0.9863	0.9795	yes	no
A1RWR4	RL15_THEPD	No assigned EC number	0.3402	0.9178	0.8874	yes	no
Q9UX85	RL15_SULSO	No assigned EC number	0.3216	0.9315	0.9444	yes	no
P18445	RL27A_RAT	No assigned EC number	0.6510	0.9931	0.9797	yes	no
P46776	RL27A_HUMAN	No assigned EC number	0.6375	0.9931	0.9797	yes	no
Q9BI06	R27A1_ENTHI	No assigned EC number	0.5579	0.9109	0.8926	N/A	no
Q00454	RL27A_TETTH	No assigned EC number	0.6066	0.9931	0.9731	N/A	no
O15883	RL27A_TRYBB	No assigned EC number	0.5646	0.9863	0.9931	N/A	no
A9A9P2	RL15_METM6	No assigned EC number	0.3379	0.9520	0.9720	yes	no
A6UWW0	RL15_META3	No assigned EC number	0.3517	0.9520	0.9720	yes	no
P54047	RL15_METJA	No assigned EC number	0.3656	0.8767	0.8951	yes	no
Q27021	RL27A_TENMO	No assigned EC number	0.5570	0.9931	0.9797	N/A	no
A4FVT7	RL15_METM5	No assigned EC number	0.3466	0.9178	0.9370	yes	no
A2BME1	RL15_HYPBU	No assigned EC number	0.3333	0.9315	0.9006	yes	no
P48161	RL27A_EUPCR	No assigned EC number	0.6081	0.9931	0.9797	N/A	no
P48160	RL27A_DICDI	No assigned EC number	0.6241	0.9931	0.9797	yes	no
Q9LR33	R27A2_ARATH	No assigned EC number	0.8904	1.0	1.0	yes	no
Q6LXD1	RL15_METMP	No assigned EC number	0.3333	0.9178	0.9370	yes	no
P41092	RL27A_DROME	No assigned EC number	0.6388	0.9589	0.9395	yes	no
P02406	RL28_YEAST	No assigned EC number	0.6266	0.9931	0.9731	yes	no
P57728	RL28B_SCHPO	No assigned EC number	0.5906	0.9931	0.9797	yes	no
Q5REY2	RL27A_PONAB	No assigned EC number	0.6375	0.9931	0.9797	yes	no
P78987	RL27A_ERYGR	No assigned EC number	0.5933	0.9931	0.9731	N/A	no
Q8ZT50	RL15_PYRAE	No assigned EC number	0.3202	0.9383	0.8782	yes	no
O05643	RL15_SULAC	No assigned EC number	0.3146	0.9178	0.9305	yes	no
Q56K03	RL27A_BOVIN	No assigned EC number	0.6510	0.9931	0.9797	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XVI2163	SubName- Full=Putative uncharacterized protein; (147 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVI.1998.1	SubName- Full=Putative uncharacterized protein; (204 aa)				•	•	•	•		0.658
	eugene3.00061162	SubName- Full=Putative uncharacterized protein; (208 aa)				•	•	•	•		0.644
	eugene3.00011680	hypothetical protein (270 aa)	•			•			•		0.642
	eugene3.00060477	SubName- Full=Putative uncharacterized protein; (270 aa)	•			•			•		0.632
	estExt_Genewise1_v1.C_LG_XVI1732	hypothetical protein (276 aa)	•			•			•		0.613
	estExt_fgenesh4_pm.C_LG_XVII0043	SubName- Full=Putative uncharacterized protein; (206 aa)				•	•		•		0.587
	eugene3.00002480	SubName- Full=Putative uncharacterized protein; (206 aa)				•	•		•		0.584
	fgenesh4_kg.C_LG_V000020	SubName- Full=Putative uncharacterized protein; (106 aa)			•	•	•		•		0.552
	estExt_fgenesh4_pg.C_LG_X2153	SubName- Full=Putative uncharacterized protein; (105 aa)			•	•	•		•		0.548
	estExt_fgenesh4_pg.C_LG_VII0715	SubName- Full=Putative uncharacterized protein; (106 aa)			•	•	•		•		0.546

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
PTZ00160	147	PTZ00160, PTZ00160, 60S ribosomal protein L27a; Pr	1e-84
pfam00828	122	pfam00828, Ribosomal_L18e, Ribosomal protein L18e/	1e-27
PRK06419	148	PRK06419, rpl15p, 50S ribosomal protein L15P; Revi	5e-24
COG0200	152	COG0200, RplO, Ribosomal protein L15 [Translation,	2e-15
PRK04005	111	PRK04005, PRK04005, 50S ribosomal protein L18e; Pr	2e-05
PRK05592	146	PRK05592, rplO, 50S ribosomal protein L15; Reviewe	4e-04

>gnl|CDD|185489 PTZ00160, PTZ00160, 60S ribosomal protein L27a; Provisional

 Score =  243 bits (623), Expect = 1e-84
 Identities = 104/148 (70%), Positives = 122/148 (82%), Gaps = 3/148 (2%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M TRFKK RK RGHVS G+GR+GKHRKHPGGRGNAGG HHHRI FDKYHPG+FGKVGMR+
Sbjct: 1   MPTRFKKCRKMRGHVSHGYGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASK--DNVPMIDVTQFGYFKVLGKGVLPENQ 118
           FH  +NK++CP +N+DKLWS+VP++ + K +K  D  P+IDVT+ GYFKVLGKG LP  Q
Sbjct: 61  FHLKKNKYYCPTINVDKLWSLVPEETRYKYAKKGDKAPVIDVTKAGYFKVLGKGHLP-KQ 119

Query: 119 PVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           PV+VKA+  SK AEKKIK  GGA VLTA
Sbjct: 120 PVIVKARYFSKKAEKKIKAVGGACVLTA 147

Length = 147

>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15

 Score = 98.5 bits (246), Expect = 1e-27
 Identities = 49/131 (37%), Positives = 64/131 (48%), Gaps = 14/131 (10%)

Query: 20  GRIGKHRKH--PGGRGNAGGMHHHRILFDKYHPG--FFGKVGMRYFHKLRNKFHCPIVNI 75
           G IGK R     GGRG AGG  HH        P     GK G R     +++ + P VN+
Sbjct: 1   GIIGKTRGRGRKGGRGRAGGQKHH--FEGGQVPLYRRLGKRGFRK--LFKSRKNRPPVNL 56

Query: 76  DKLWSMVPQDVKAKASKDNVPMIDV-TQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKK 134
            KL   +   +K     D   ++ V T     KVLG G L   +P+ VKA   SK+A +K
Sbjct: 57  SKLDRKM---LKDGEEVDGETLVVVGTVTDDVKVLGNGEL--TKPLTVKALKFSKSAREK 111

Query: 135 IKEAGGAVVLT 145
           I++AGG VVL 
Sbjct: 112 IEKAGGEVVLL 122

This family includes eukaryotic L18 as well as prokaryotic L15. Length = 122

>gnl|CDD|235799 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed

 Score = 90.3 bits (225), Expect = 5e-24
 Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 8/149 (5%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGM 58
           M  + KK+RK RG  + G G    HR     GGRG AG   H      KY P ++GK G 
Sbjct: 1   MIRKKKKSRKLRGSRTHGGGTHKNHRGAGSRGGRGMAGRHKHKWTWVVKYGPDWYGKHGF 60

Query: 59  RYFHKLRNKFHCPIVNIDKLWSMVPQDV-KAKASKDN-VPMIDVTQFGYFKVLGKGVLPE 116
           +   KL  +     +N+ +L  +      + KA +++   ++D+T+ GY KVLG G +  
Sbjct: 61  KRPPKLIKEVS--TINVGELDELADLLKAEGKAEEEDGKIVVDLTELGYDKVLGGGKV-- 116

Query: 117 NQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145
            +P+V+KA   S+ A +KI+ AGG VVL+
Sbjct: 117 TRPLVIKADAFSEKAIEKIEAAGGEVVLS 145

Length = 148

>gnl|CDD|223278 COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 4   RFKKNRKKRGHVSAGHGRIGKHR--KHPGGRGNAGG---MHHHRILFDKYHPG-----FF 53
                  +    +      G        GGRG+ G      H  +               
Sbjct: 3   LNDLKPARGSKKTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRRL 62

Query: 54  GKVGMRYFHKLRNKFHCPIVNIDKLWSMVP--QDVKAKASKDNVPMIDVTQFGYFKVLGK 111
            K G    +    K    +VN+ KL  ++P  ++V   + K    +  +      KVLG 
Sbjct: 63  PKRGFT--NSKFKKVEYAVVNLGKLAELLPEGEEVTLASLKAAGVIRKLKDLV--KVLGN 118

Query: 112 GVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           G L +  PV VKAK  SK+A +KI+ AGG V L  
Sbjct: 119 GKLTKAVPVKVKAK-ASKSAIEKIEAAGGKVELIE 152

Length = 152

>gnl|CDD|235196 PRK04005, PRK04005, 50S ribosomal protein L18e; Provisional

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 107 KVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVV 143
           KVLG G L  +  V V A   S+TA++KI+EAGG  +
Sbjct: 58  KVLGSGKL--DHKVTVAALSFSETAKEKIEEAGGKAL 92

Length = 111

>gnl|CDD|235523 PRK05592, rplO, 50S ribosomal protein L15; Reviewed

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 105 YFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145
             KVLG G L   + + VKA   SK+A++ I+ AGG V   
Sbjct: 108 GVKVLGNGEL--TKKLTVKAHKFSKSAKEAIEAAGGKVEEI 146

Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PTZ00160	147	60S ribosomal protein L27a; Provisional	100.0
PRK06419	148	rpl15p 50S ribosomal protein L15P; Reviewed	100.0
KOG1742	147	consensus 60s ribosomal protein L15/L27 [Translati	100.0
TIGR01071	145	rplO_bact ribosomal protein L15, bacterial/organel	100.0
PRK05592	146	rplO 50S ribosomal protein L15; Reviewed	100.0
PF00828	129	Ribosomal_L18e: Ribosomal protein L18e/L15; InterP	99.97
COG0200	152	RplO Ribosomal protein L15 [Translation, ribosomal	99.97
KOG0846	274	consensus Mitochondrial/chloroplast ribosomal prot	99.86
PRK04005	111	50S ribosomal protein L18e; Provisional	99.57
COG1727	122	RPL18A Ribosomal protein L18E [Translation, riboso	99.22
PTZ00195	198	60S ribosomal protein L18; Provisional	98.79
PTZ00469	187	60S ribosomal subunit protein L18; Provisional	98.77
COG0200	152	RplO Ribosomal protein L15 [Translation, ribosomal	97.81
KOG1714	188	consensus 60s ribosomal protein L18 [Translation,	94.13
PF00828	129	Ribosomal_L18e: Ribosomal protein L18e/L15; InterP	91.9

>PTZ00160 60S ribosomal protein L27a; Provisional

Probab=100.00  E-value=3.4e-52  Score=310.06  Aligned_cols=144  Identities=72%  Similarity=1.198  Sum_probs=133.2

Q ss_pred             CCCcccccccccCccccCCCCCCCCCCCCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhhhh
Q 032139            1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWS   80 (146)
Q Consensus         1 m~~r~kk~rk~RG~~s~G~G~~gq~r~~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L~~   80 (146)
                      |++|.+|+||+|||+|||||++||||+|+||||+||+++|+|+||++|+|.||+|+||+.|+..++...+.+|||++||+
T Consensus         1 M~~r~kK~rK~RG~rt~G~G~~gkhR~~~GGrG~AG~~kH~~~~~~ky~p~~fGK~Gfr~~~~~~~~~~~~~INl~~L~~   80 (147)
T PTZ00160          1 MPTRFKKCRKMRGHVSHGYGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRHFHLKKNKYYCPTINVDKLWS   80 (147)
T ss_pred             CCcccccccCCCCCCccCCCCCCCCCCCCCCCcccCCCcceEEEeeecCCCccCCCCccCCccccccccCceeEHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998755666679999999999


Q ss_pred             hcCcCeeccccc--CCCCeeecCCCCceEEecCCCC-CCCCceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139           81 MVPQDVKAKASK--DNVPMIDVTQFGYFKVLGKGVL-PENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA  146 (146)
Q Consensus        81 ~~~~~~~i~~~~--~~~~li~~~~~g~vKvLG~G~l-~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~~  146 (146)
                      ++++....+.++  .++++||..+.+++||||+|+| +  +||+|+|..||++|+|+||+|||+|+++|
T Consensus        81 lv~~~~~~~~a~~~~~~~vIDl~~~g~~KVLG~G~l~~--~~v~Vka~~~Sk~A~ekIe~aGG~v~l~a  147 (147)
T PTZ00160         81 LVPEETRYKYAKKGDKAPVIDVTKAGYFKVLGKGHLPK--QPVIVKARYFSKKAEKKIKAVGGACVLTA  147 (147)
T ss_pred             HhHHHHHHhhhhccCCceEEEeeccCceEEecCCeEcC--ccEEEEEeecCHHHHHHHHHcCCEEEEcC
Confidence            998765555542  7889999998999999999999 6  79999999999999999999999999875

>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed

Probab=100.00  E-value=1.5e-50  Score=302.27  Aligned_cols=141  Identities=36%  Similarity=0.536  Sum_probs=126.6

Q ss_pred             CCCcccccccccCccccCCCCCCCCCC--CCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhh
Q 032139            1 MTTRFKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKL   78 (146)
Q Consensus         1 m~~r~kk~rk~RG~~s~G~G~~gq~r~--~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L   78 (146)
                      |+++.+|+||+|||+|||||+++|||+  |+||||+||+++|+|+||++|+|.||||+||++|+.  .+.+|.+|||++|
T Consensus         1 m~~~~~k~rk~RG~~t~G~G~~~~~R~~G~~GGrG~aG~~~h~~~~~~k~~p~~fpK~GF~~~~~--~~~~~~~INL~~L   78 (148)
T PRK06419          1 MIRKKKKSRKLRGSRTHGGGTHKNHRGAGSRGGRGMAGRHKHKWTWVVKYGPDWYGKHGFKRPPK--LIKEVSTINVGEL   78 (148)
T ss_pred             CCcccccccCCCcCCCcCCCCcCcCCCCCCCCCCcccCCCcccceEeeeeCCCCCCCCCccCCCc--CcceeeeEEHHHH
Confidence            999999999999999999999999999  999999999999999999999999999999999753  3477899999999


Q ss_pred             hhhcCcCeecccc--cCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           79 WSMVPQDVKAKAS--KDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        79 ~~~~~~~~~i~~~--~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      |+++++.....+.  +.+..+||..+.+++||||+|+|+  +||+|+|.+||++|+|+||+|||+|+++
T Consensus        79 ~~l~~~l~~~g~i~~~~~~~vid~~~~g~~KVLG~G~l~--~pl~Vka~~fS~~A~ekIe~aGG~v~l~  145 (148)
T PRK06419         79 DELADLLKAEGKAEEEDGKIVVDLTELGYDKVLGGGKVT--RPLVIKADAFSEKAIEKIEAAGGEVVLS  145 (148)
T ss_pred             HHhHHHHHHCCcccccCCcceeeeccCCceEEeCCCccC--cCEEEEEeccCHHHHHHHHHcCCEEEEe
Confidence            9987533222222  256789999888999999999999  9999999999999999999999999976

>KOG1742 consensus 60s ribosomal protein L15/L27 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.5e-39  Score=234.52  Aligned_cols=144  Identities=68%  Similarity=1.157  Sum_probs=135.5

Q ss_pred             CCCcccccccccCccccCCCCCCCCCCCCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhhhh
Q 032139            1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWS   80 (146)
Q Consensus         1 m~~r~kk~rk~RG~~s~G~G~~gq~r~~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L~~   80 (146)
                      |+++.+|+||+||+.|+|+|++|+||+|+||+|+|||  |+++.|++|+|.||+|.|++.|+...+...+.+||||.||.
T Consensus         1 M~s~~rKTrKLrGHVShGhgrigKhrkhpgGrg~agg--hhr~~fdKyhpgyfgkvgmr~yh~~rn~~~~P~vnldkLWt   78 (147)
T KOG1742|consen    1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGH--HHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWT   78 (147)
T ss_pred             CcchhhHHHHhhcccccccccccccccCCCCccccCC--cccccccccCCCcccccchhHHHHhhccCcCCcccHHHHHH
Confidence            8999999999999999999999999999999999999  89999999999999999999999878889999999999999


Q ss_pred             hcCcCeecccc---cCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139           81 MVPQDVKAKAS---KDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA  146 (146)
Q Consensus        81 ~~~~~~~i~~~---~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~~  146 (146)
                      ++.++..++.+   +..+.+||..+.||.||||.|.|..++|++|+|..||+.|+|+|.++||.+++++
T Consensus        79 lv~~~~~~~~~~~k~g~aPvidv~~~Gy~kvlGkgklp~~~PvIVKak~~s~~AeekIk~~gg~~~~~~  147 (147)
T KOG1742|consen   79 LVREQTRVKAAKNKTGAAPVIDVVQSGYYKVLGKGKLPEETPVIVKAKYFSRRAEEKIKKAGGAVVLTA  147 (147)
T ss_pred             hhhHHHHHHHhccCCCCCceeeeeecceeEeeccccCCCCCcEEEeccccCccchHHHHhcCceeeecC
Confidence            99988777665   2888999999999999999999987899999999999999999999999998753

>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle

Probab=100.00  E-value=2.1e-35  Score=220.00  Aligned_cols=126  Identities=31%  Similarity=0.433  Sum_probs=106.5

Q ss_pred             cccccccccCcc-----ccCCCCCCCCCCCCC--cCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEech
Q 032139            4 RFKKNRKKRGHV-----SAGHGRIGKHRKHPG--GRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNID   76 (146)
Q Consensus         4 r~kk~rk~RG~~-----s~G~G~~gq~r~~~G--grG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~   76 (146)
                      +++++|++||++     |||+|++||.+++.+  -.||||||+|++.+        +||+||++++   ++.+|.+|||+
T Consensus        12 ~~~~kR~GRG~gsg~Gkt~GrG~kGqk~R~g~~~~~gfEGGQ~Pl~rr--------lPK~GF~~~~---~~~~~~~VNL~   80 (145)
T TIGR01071        12 KKRRKRVGRGIGSGLGKTSGRGHKGQKARSGGKVRRGFEGGQMPLYRR--------LPKRGFSNKR---FKKEYAEVNLG   80 (145)
T ss_pred             cCCCcceeCCCCCCCCCcCCCCCCcCcCCCCCCCCCeecCCCCceEEE--------CCCCCCCCcc---cCcceeEEEHH
Confidence            456778999975     599999999887532  34999999443333        7899999842   56889999999


Q ss_pred             hhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEE
Q 032139           77 KLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVV  143 (146)
Q Consensus        77 ~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~  143 (146)
                      +|+++++++.+||+++ .++++|+.. .++|||||+|+++  +||+|+|++||++|+|+||+|||+|+
T Consensus        81 ~L~~~~~~g~~i~~~~L~~~gli~~~-~~~vKvLg~G~l~--~~l~I~a~~~S~sA~ekIE~aGG~v~  145 (145)
T TIGR01071        81 KLAKLFPNGEVVTLETLKEKGLITKK-IKFVKVLGNGKLT--KPLTVKAHRVSKSAKAAIEAAGGSVE  145 (145)
T ss_pred             HHhhhhhcCCEecHHHHhhCccCcCC-CCceEEeCCCCcC--cCEEEEEEEECHHHHHHHHHcCCEEC
Confidence            9999888888899987 889999854 6789999999999  99999999999999999999999984

>PRK05592 rplO 50S ribosomal protein L15; Reviewed

Probab=100.00  E-value=1.9e-34  Score=215.10  Aligned_cols=126  Identities=28%  Similarity=0.350  Sum_probs=106.7

Q ss_pred             cccccccccCcc-----ccCCCCCCCCCCCCC--cCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEech
Q 032139            4 RFKKNRKKRGHV-----SAGHGRIGKHRKHPG--GRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNID   76 (146)
Q Consensus         4 r~kk~rk~RG~~-----s~G~G~~gq~r~~~G--grG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~   76 (146)
                      +++++|++||++     |||+|++||.+++.+  -.||||||+|++.+        +||+||++    .++..|.+|||+
T Consensus        13 ~~~~kRvGRG~gsG~GkT~GrG~KGqksR~g~~~~~gFEGGQ~Pl~rr--------lPk~Gf~~----~~~~~y~~VNL~   80 (146)
T PRK05592         13 RKARKRVGRGIGSGLGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRR--------LPKRGFTN----IFRKEYAVVNLG   80 (146)
T ss_pred             cCCCccEecCCCCCCCCcCCCCCCcccCCCCCCCCCccccCCCceEEE--------cccCCcCC----CCcceEEEEeHH
Confidence            456788999976     599999999888643  34999999444333        78999987    467899999999


Q ss_pred             hhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           77 KLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        77 ~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      +|++ ++++.+||+++ .+.++|... ..+|||||+|+|+  ++|+|+|++||++|+|+||+|||+|+++
T Consensus        81 ~L~~-~~~~~~I~~~~L~~~gli~~~-~~~vKvLg~G~l~--~~i~I~a~~~S~sA~e~IE~aGG~v~~~  146 (146)
T PRK05592         81 DLNK-FEEGTEVTLEALKAAGLIRKN-IKGVKVLGNGELT--KKLTVKAHKFSKSAKEAIEAAGGKVEEI  146 (146)
T ss_pred             Hhhc-cCCCCeECHHHHHHCCcccCC-CcceEEEecCccc--cCEEEEEEccCHHHHHHHHHcCCEEEeC
Confidence            9987 56667899998 999999876 3479999999999  9999999999999999999999999864

>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=1.5e-32  Score=200.52  Aligned_cols=124  Identities=38%  Similarity=0.552  Sum_probs=99.2

Q ss_pred             CCCCCCCC--CCCcCCcCCCCCceeeeecccCCCC--CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCC
Q 032139           20 GRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGF--FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV   95 (146)
Q Consensus        20 G~~gq~r~--~~GgrG~aGg~~h~~~~~~~~~p~~--~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~   95 (146)
                      |++|++|+  ++|++++||+++|++.++.+|||+|  |||+||++++...++.+|.+|||++|++++++....+.+....
T Consensus         1 G~~gkt~grG~kG~~~rsG~~~~~~~feggq~pl~rr~pK~Gf~~~~~~~~~~~~~~vnL~~L~~~i~~~~~~~~~~~~~   80 (129)
T PF00828_consen    1 GRKGKTRGRGHKGGRGRSGGHKHRPGFEGGQMPLYRRLPKRGFNNPHLRKNRREYPPVNLSKLQELIEKLKIDGTEIDGK   80 (129)
T ss_dssp             SSSSSSSSSSSSSSSSSTTTSSTSSHHHHHHSHHHHHSSSSSHHHCCHCSGTCCCEEEEHHHHHHHTTTSSSSSCECTTS
T ss_pred             CCCCccCcccCCCCCCCCCCCCCCchhcccccccccccCcccccccccccCcceeEeeeHHHHHHHHHhccccccccCCc
Confidence            44555555  6888999999999999999999999  9999999976544567899999999999988653332111222


Q ss_pred             CeeecCC-CCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           96 PMIDVTQ-FGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        96 ~li~~~~-~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      .+++... .+++||||+|+++  +||+|+|++||++|+|+||+|||+|+++
T Consensus        81 ~~~~~~~~~~~~KvLg~G~l~--~~l~I~a~~~S~~A~ekIe~aGG~v~~~  129 (129)
T PF00828_consen   81 ILVDAGLIKGYVKVLGKGELT--KPLTIKAHRFSKSAKEKIEAAGGEVVTF  129 (129)
T ss_dssp             EEEECCEESSEEEEESSSSSS--SSEEEEESEETHHHHHHHHHTSEEEEEH
T ss_pred             eeeeccccccceeeeccCCcc--cceEEEEEecCHHHHHHHHHcCCEEEeC
Confidence            3333322 3689999999999  9999999999999999999999999874

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....

>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=3.7e-30  Score=192.63  Aligned_cols=129  Identities=31%  Similarity=0.414  Sum_probs=108.7

Q ss_pred             ccC-ccccCCCCCCCCCC--CCCcCCcCCCC---Cceeee--eccc-CCCC--CccCCcCCCCCCCCCe-eeeEEechhh
Q 032139           11 KRG-HVSAGHGRIGKHRK--HPGGRGNAGGM---HHHRIL--FDKY-HPGF--FGKVGMRYFHKLRNKF-HCPIVNIDKL   78 (146)
Q Consensus        11 ~RG-~~s~G~G~~gq~r~--~~GgrG~aGg~---~h~~~~--~~~~-~p~~--~~K~GF~~f~~~~~~~-~~~~INL~~L   78 (146)
                      .|| +++++|+..|++|+  +.+|||.+|+.   .|.|+|  |++. ||+|  |||+||++.   .+.. +|.+|||++|
T Consensus         9 ~~G~~~~~~rvgrG~~sG~Gkt~GRG~kGqkaRsg~~~~~~gfeGgq~Pl~rrlpK~GF~~~---~~~~~~~~~vn~~~l   85 (152)
T COG0200           9 ARGSKKTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRRLPKRGFTNS---KFKKVEYAVVNLGKL   85 (152)
T ss_pred             CCCCccccCCcccCCCCCCCCCCCCCCCCCccccCCceecceeecCCcchhhhcCCCCCccc---cccccceeEEEHHHh
Confidence            788 78899999999985  78999999985   345555  5555 7886  999999972   3444 8999999999


Q ss_pred             hhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEe-ccCHHHHHHHHHcCCEEEEc
Q 032139           79 WSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAK-LVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        79 ~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~-~~S~~A~ekIe~aGG~v~~~  145 (146)
                      +++++++.++++++ .+.++|..... .+||||+|+|+  +++.|++. .||++|+|+||+|||+|+++
T Consensus        86 ~~~~~~~~~v~~~~l~~~~~i~~~~~-~vKvLg~G~l~--~~~~~~v~a~~S~~A~ekIe~aGG~v~~~  151 (152)
T COG0200          86 AELLPEGEEVTLASLKAAGVIRKLKD-LVKVLGNGKLT--KAVPVKVKAKASKSAIEKIEAAGGKVELI  151 (152)
T ss_pred             hhhccccccccHHHHhhCCeEecccc-ccEEeccCeec--cceeEEEEeeeCHHHHHHHHHcCCEEEec
Confidence            99999999999997 88888877744 59999999999  77777777 99999999999999999986

>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=3.2e-22  Score=158.86  Aligned_cols=128  Identities=20%  Similarity=0.298  Sum_probs=101.2

Q ss_pred             ccccccccCcc-----ccCCCCCCCCCCC-CCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhh
Q 032139            5 FKKNRKKRGHV-----SAGHGRIGKHRKH-PGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKL   78 (146)
Q Consensus         5 ~kk~rk~RG~~-----s~G~G~~gq~r~~-~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L   78 (146)
                      ++++|++||..     |||+|++||..+. +.-.||+|||++.+.+        |||+||.+    .++..|.+++|.+|
T Consensus        34 kk~kR~GRg~~sG~Gkt~GrG~KGqkqR~~~~~lGfEgGqtP~yrr--------~Pk~~~~~----~~~r~~~pl~L~rl  101 (274)
T KOG0846|consen   34 KKKKRKGRGISSGLGKTSGRGHKGQKQRGGRKILGFEGGQTPLYRR--------FPKFGFGN----GGRRQYLPLSLGRL  101 (274)
T ss_pred             ccccccCCCcCCCCccccCCCCcchhhccCCCccccccCCchhHHh--------cccccccc----cccccCCcccHHHH
Confidence            45788999964     5999999997664 3333999999664443        67888886    56889999999999


Q ss_pred             hhhcCcCe-----eccccc-CCCCeeecC--CCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           79 WSMVPQDV-----KAKASK-DNVPMIDVT--QFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        79 ~~~~~~~~-----~i~~~~-~~~~li~~~--~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      +.+|+.+.     .||+++ .+.++|...  +.| |.|.++|.-+|+-+|+|+|.+||..|+++||+|||+|+..
T Consensus       102 q~lID~grid~~q~Idm~tL~~~g~i~p~~~eyG-v~L~~~G~d~~~~~i~iEvs~aS~~AiaaIEkaGG~vtt~  175 (274)
T KOG0846|consen  102 QKLIDTGRIDPSQPIDMKTLKDSGLINPKGREYG-VQLTADGADEFKAKINIEVSRASVQAIAAIEKAGGSVTTA  175 (274)
T ss_pred             HHHHHhcCCCccCceeHHHHHhccCCCccccccC-ceeeccCCccccceEEEEehhhhHHHHHHHHhcCCeEEEE
Confidence            99988662     356666 777765543  333 8999888777779999999999999999999999999863

>PRK04005 50S ribosomal protein L18e; Provisional

Probab=99.57  E-value=5e-15  Score=105.78  Aligned_cols=63  Identities=33%  Similarity=0.323  Sum_probs=53.0

Q ss_pred             CeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           67 KFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        67 ~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      +.+|.+|||++|+.+.+++.++          .    .++||||+|+++  +|++|+++.||++|+++||+|||+|+++
T Consensus        32 r~~y~vVNL~~L~~~~~~~~vv----------~----~~~KVLg~G~l~--k~l~V~a~~~Sk~A~ekIe~aGG~v~~~   94 (111)
T PRK04005         32 RRRRAEVNLSKINRYAKEGDTV----------V----VPGKVLGSGKLD--HKVTVAALSFSETAKEKIEEAGGKALTI   94 (111)
T ss_pred             CCccceEEHHHHHhhccCCCEE----------E----EeeEEEcCceEc--CCEEEEEeecCHHHHHHHHHcCCEEEEH
Confidence            4689999999998754343222          1    269999999999  9999999999999999999999999864

>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=2.3e-11  Score=87.47  Aligned_cols=63  Identities=35%  Similarity=0.382  Sum_probs=53.0

Q ss_pred             CeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           67 KFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        67 ~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      +..+++|||++|+.+..+++        .-+|      +-||||+|.++  ++++|-|..||++|.++|+.|||+|..+
T Consensus        43 rr~ra~VnlsKI~r~ak~~d--------~vvV------pGkVLg~g~l~--~kVtVaAl~FS~~A~~KI~~aGGe~~tl  105 (122)
T COG1727          43 RRNRAEVNVSKINRYAKEGD--------TVVV------PGKVLGDGKLD--KKVTVAALRFSKTAREKIEEAGGECLTL  105 (122)
T ss_pred             cccCCceeHHHHHhhcCCCC--------EEEE------eeeEecCcccc--cceEEEEEecCHHHHHHHHHcCCeEeeH
Confidence            34568999999999876552        2233      45999999999  9999999999999999999999999865

>PTZ00195 60S ribosomal protein L18; Provisional

Probab=98.79  E-value=7.9e-09  Score=80.10  Aligned_cols=72  Identities=19%  Similarity=0.215  Sum_probs=53.3

Q ss_pred             eeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCC--ceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           68 FHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQ--PVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        68 ~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~--~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      ....+|||++|..+..++.....+..+..++ ..   +-+||++|.|.  .  +|+|-|..||++|+++|++|||+|..+
T Consensus        57 ~nRppVsLSrI~r~~k~~d~~~~~~~~~k~~-VV---vGkVtdd~rl~--~vPkvtVaALrfS~tAr~rI~kAGGe~lT~  130 (198)
T PTZ00195         57 SNRAPISLSRIAVVMKRKAVFTAKGKKAPIA-VV---VGDVLDDVRMA--RIPAMRVCALRFSKSARQSIVAAGGECLTF  130 (198)
T ss_pred             ccCCceeHHHHHHHHhccccccccCCCCcEE-EE---EeeEcCCcccc--ccCceEEEEEecCHHHHHHHHHhCCEEEeH
Confidence            4567999999999876542111112222222 11   34999999998  6  999999999999999999999999865

>PTZ00469 60S ribosomal subunit protein L18; Provisional

Probab=98.77  E-value=1e-08  Score=79.02  Aligned_cols=66  Identities=23%  Similarity=0.272  Sum_probs=51.2

Q ss_pred             eeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           68 FHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        68 ~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      ....+|||++|..+.. +.     +.+.-+|      +-|||++|.|..-.+|+|-|..||++|+++||+|||+|..+
T Consensus        57 rnr~pVnLSkI~r~~~-~k-----e~~~~VV------vGkVl~dgrl~~vpkvtVaAL~fS~~Ar~kI~~AGGe~lT~  122 (187)
T PTZ00469         57 RFRPPLSLSKLHRHMA-SY-----PDDVAVV------VGSITDDKRLYDCKKLKVCALRFTETARKRILDAGGECLTF  122 (187)
T ss_pred             ccCCceeHHHHHHHhc-cC-----CCCEEEE------EeeEccCccccccCceEEEEEecCHHHHHHHHHhCCEEEeH
Confidence            4567999999998772 11     1122222      34999999986447999999999999999999999999865

>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=1.2e-05  Score=60.52  Aligned_cols=43  Identities=26%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             cccccccCccc-----cCCCCCCCCCCCCCc---CCcCCCCCceeeeeccc
Q 032139            6 KKNRKKRGHVS-----AGHGRIGKHRKHPGG---RGNAGGMHHHRILFDKY   48 (146)
Q Consensus         6 kk~rk~RG~~s-----~G~G~~gq~r~~~Gg---rG~aGg~~h~~~~~~~~   48 (146)
                      .+.|.+||++|     +|+|+.||++++.+.   .+|+|||.|+|.+|++.
T Consensus        15 ~~~rvgrG~~sG~Gkt~GRG~kGqkaRsg~~~~~~gfeGgq~Pl~rrlpK~   65 (152)
T COG0200          15 TRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRRLPKR   65 (152)
T ss_pred             ccCCcccCCCCCCCCCCCCCCCCCccccCCceecceeecCCcchhhhcCCC
Confidence            44556688654     899999998876544   48999999999999887

>KOG1714 consensus 60s ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=94.13  E-value=0.04  Score=42.44  Aligned_cols=39  Identities=26%  Similarity=0.255  Sum_probs=30.1

Q ss_pred             EEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139          107 KVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus       107 KvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      +|+.+-++---.++.|.|..||++|.+.|++|||+|.++
T Consensus        85 TvtdD~rv~~vPkl~v~al~~t~~ar~rI~kagg~i~Tl  123 (188)
T KOG1714|consen   85 TVTDDLRVQEVPKLKVAALRFTKGARARILKAGGEILTL  123 (188)
T ss_pred             eecccceeeecccceeeeeecccchhhhhhccCceEEee
Confidence            344444332125899999999999999999999999865

>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=91.90  E-value=0.026  Score=40.80  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=26.5

Q ss_pred             cccCCCCCCCCCCCC---CcCCcCCCCCceeeeeccc
Q 032139           15 VSAGHGRIGKHRKHP---GGRGNAGGMHHHRILFDKY   48 (146)
Q Consensus        15 ~s~G~G~~gq~r~~~---GgrG~aGg~~h~~~~~~~~   48 (146)
                      .|||+|+.||+.++.   --++++|+|+|.|.+|.+.
T Consensus         5 kt~grG~kG~~~rsG~~~~~~~feggq~pl~rr~pK~   41 (129)
T PF00828_consen    5 KTRGRGHKGGRGRSGGHKHRPGFEGGQMPLYRRLPKR   41 (129)
T ss_dssp             SSSSSSSSSSSSSTTTSSTSSHHHHHHSHHHHHSSSS
T ss_pred             ccCcccCCCCCCCCCCCCCCchhcccccccccccCcc
Confidence            468999999876632   2358999999999888775

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
3izr_O	144	Localization Of The Large Subunit Ribosomal Protein		2e-63
2zkr_l	148	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-50
3izs_O	149	Localization Of The Large Subunit Ribosomal Protein		1e-48
3o58_Y	149	Yeast 80s Ribosome. This Entry Consists Of The 60s		2e-48
1s1i_V	148	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		7e-48
3jyw_V	142	Structure Of The 60s Proteins For Eukaryotic Riboso		6e-44
4a17_K	149	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-42
3zf7_b	145	High-resolution Cryo-electron Microscopy Structure		1e-39
3j21_L	147	Promiscuous Behavior Of Proteins In Archaeal Riboso		7e-05

>pdb|3IZR|O Chain O, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 144

Iteration: 1
 Score =  237 bits (604), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 130/146 (89%), Gaps = 2/146 (1%)
Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG+FGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPV 120
           FH+L N+FHCP VN+++LWSMVP +  A A     P+IDVTQFGY KVLGKG+LP  +P+
Sbjct: 61  FHRLSNRFHCPAVNVERLWSMVPAE--AGAGAGKAPVIDVTQFGYTKVLGKGMLPPERPI 118
Query: 121 VVKAKLVSKTAEKKIKEAGGAVVLTA 146
           VVKAKL+SK AEKKIK AGGAV+LTA
Sbjct: 119 VVKAKLISKVAEKKIKAAGGAVLLTA 144

>pdb|2ZKR|LL Chain l, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 148

Iteration: 1
 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/149 (63%), Positives = 116/149 (77%), Gaps = 4/149 (2%)
Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMKH 60
Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPEN 117
           +H  RN+  CP VN+DK W++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK- 119
Query: 118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148

>pdb|3IZS|O Chain O, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 149

Iteration: 1
 Score =  188 bits (477), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 114/150 (76%), Gaps = 5/150 (3%)
Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M +RF K RK RGHVSAG GRIGKHRKHPGGRG AGG HHHRI  DKYHPG+FGKVGMRY
Sbjct: 1   MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGQHHHRINMDKYHPGYFGKVGMRY 60
Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPE 116
           FHK +  F  P++N+DKLW+++P+D + +    ASK+  P+ID    GY K+LGKG +P 
Sbjct: 61  FHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP- 119
Query: 117 NQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           N PV+VKA+ VSK AE+KI+ AGG V L A
Sbjct: 120 NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149

>pdb|3O58|Y Chain Y, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. Length = 149

Iteration: 1
 Score =  187 bits (475), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 114/150 (76%), Gaps = 5/150 (3%)
Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M +RF K RK RGHVSAG GRIGKHRKHPGGRG AGG HHHRI  DKYHPG+FGKVGMRY
Sbjct: 1   MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYHPGYFGKVGMRY 60
Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPE 116
           FHK +  F  P++N+DKLW+++P+D + +    ASK+  P+ID    GY K+LGKG +P 
Sbjct: 61  FHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP- 119
Query: 117 NQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           N PV+VKA+ VSK AE+KI+ AGG V L A
Sbjct: 120 NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149

>pdb|1S1I|V Chain V, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 148

Iteration: 1
 Score =  185 bits (470), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 93/148 (62%), Positives = 113/148 (76%), Gaps = 5/148 (3%)
Query: 3   TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFH 62
           +RF K RK RGHVSAG GRIGKHRKHPGGRG AGG HHHRI  DKYHPG+FGKVGMRYFH
Sbjct: 2   SRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYHPGYFGKVGMRYFH 61
Query: 63  KLRNKFHCPIVNIDKLWSMVPQDVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQ 118
           K +  F  P++N+DKLW+++P+D + +    ASK+  P+ID    GY K+LGKG +P N 
Sbjct: 62  KQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NV 120
Query: 119 PVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           PV+VKA+ VSK AE+KI+ AGG V L A
Sbjct: 121 PVIVKARFVSKLAEEKIRAAGGVVELIA 148

>pdb|3JYW|V Chain V, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 142

Iteration: 1
 Score =  172 bits (436), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 108/142 (76%), Gaps = 6/142 (4%)
Query: 7   KNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRN 66
           K RK RGHVSAG GRIGKHRKHPGG G AGG HHHRI  DKYHPG+FGKVGMRYFHK + 
Sbjct: 2   KTRKHRGHVSAGKGRIGKHRKHPGG-GMAGGEHHHRINMDKYHPGYFGKVGMRYFHKQQA 60
Query: 67  KFHCPIVNIDKLWSMVPQDVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVV 122
            F  P++N+DKLW+++P+D + +    ASK+  P+ID    GY K+LGKG +P N PV+V
Sbjct: 61  HFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NVPVIV 119
Query: 123 KAKLVSKTAEKKIKEAGGAVVL 144
           KA+ VSK AE+KI+ AGG V L
Sbjct: 120 KARFVSKLAEEKIRAAGGVVEL 141

>pdb|4A17|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 149

Iteration: 1
 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/150 (60%), Positives = 109/150 (72%), Gaps = 5/150 (3%)
Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGG--MHHHRILFDKYHPGFFGKVGM 58
           M +  KK RK RGHVS GHGR+GKHRK     G      MHHHRIL +K+HPG++GK+GM
Sbjct: 1   MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60
Query: 59  RYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKD--NVPMIDVTQFGYFKVLGKGVLPE 116
           R FH  +N  HCP+VNIDKLWS+V    + K ++D   VP+IDVT+ G+FKVLGKG LP 
Sbjct: 61  RTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP- 119
Query: 117 NQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           NQPVVVKAK  SKTAE++I   GGA VLTA
Sbjct: 120 NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149

>pdb|3ZF7|BB Chain b, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 145

Iteration: 1
 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 104/147 (70%), Gaps = 3/147 (2%)
Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M TRFKK R +RG    G+GR+GKHRKHP GRGNAGG HHHRI F KYHPG+FGK GM +
Sbjct: 1   MPTRFKKTRHQRGSTFCGYGRVGKHRKHPSGRGNAGGEHHHRINFRKYHPGYFGKCGMNH 60
Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQP 119
           +HK +N    P +N+D L  ++ +D   KA K + +P+ID+   GY K+LG G L    P
Sbjct: 61  YHKKKNTTWKPTINLDNLTKLMAKDEAMKAKKGEALPVIDLLANGYSKLLGNGHL--QAP 118
Query: 120 VVVKAKLVSKTAEKKIKEAGGAVVLTA 146
            +VKA+ VSK A+KKI++AGGAVVL A
Sbjct: 119 CIVKARWVSKLADKKIRKAGGAVVLQA 145

>pdb|3J21|L Chain L, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 147

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 97  MIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 144
           ++DVTQF   KVLG G L   +P+V+KA+  S  AE+KIK AGG  VL
Sbjct: 102 IVDVTQFAD-KVLGTGKL--TRPLVIKARAFSPKAEEKIKAAGGEAVL 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
3iz5_O	144	60S ribosomal protein L27A (L15P); eukaryotic ribo	2e-55
3o58_Y	149	60S ribosomal protein L28; ribosomal RNA and prote	9e-52
2zkr_l	148	60S ribosomal protein L27A; protein-RNA complex, 6	2e-51
4a17_K	149	L29, RPL27A, 60S ribosomal protein L27A; eukaryoti	3e-48
1vq8_L	165	50S ribosomal protein L15P; ribosome 50S, protein-	2e-32
2zjr_I	156	50S ribosomal protein L15; ribosome, large ribosom	2e-04
3r8s_L	143	50S ribosomal protein L15; protein biosynthesis, R	4e-04
3v2d_P	150	50S ribosomal protein L15; ribosome associated inh	4e-04
3bbo_N	257	Ribosomal protein L15; large ribosomal subunit, sp	4e-04

>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 1s1i_V 3jyw_V Length = 149

 Score =  160 bits (406), Expect = 9e-52
 Identities = 92/150 (61%), Positives = 112/150 (74%), Gaps = 5/150 (3%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M +RF K RK RGHVSAG GRIGKHRKHPGGRG AGG HHHRI  DKYHPG+FGKVGMRY
Sbjct: 1   MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPE 116
           FHK +  F  P++N+DKLW+++P+D + +  K    +  P+ID    GY K+LGKG +P 
Sbjct: 61  FHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP- 119

Query: 117 NQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           N PV+VKA+ VSK AE+KI+ AGG V L A
Sbjct: 120 NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149

>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 148

 Score =  159 bits (404), Expect = 2e-51
 Identities = 95/149 (63%), Positives = 114/149 (76%), Gaps = 4/149 (2%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPG+FGKVGM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMKH 60

Query: 61  FHKLRNKFHCPIVNIDKLWSMVPQDVKAKASK---DNVPMIDVTQFGYFKVLGKGVLPEN 117
           +H  RN+  CP VN+DK W++V +  +  A+K      P+IDV + GY+KVLGKG LP  
Sbjct: 61  YHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLP-K 119

Query: 118 QPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148

>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K Length = 149

 Score =  151 bits (382), Expect = 3e-48
 Identities = 96/150 (64%), Positives = 114/150 (76%), Gaps = 5/150 (3%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKH--PGGRGNAGGMHHHRILFDKYHPGFFGKVGM 58
           M +  KK RK RGHVS GHGR+GKHRK    GGRG AGGMHHHRIL +K+HPG++GK+GM
Sbjct: 1   MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60

Query: 59  RYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASK--DNVPMIDVTQFGYFKVLGKGVLPE 116
           R FH  +N  HCP+VNIDKLWS+V    + K ++    VP+IDVT+ G+FKVLGKG LP 
Sbjct: 61  RTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP- 119

Query: 117 NQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           NQPVVVKAK  SKTAE++I   GGA VLTA
Sbjct: 120 NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ... Length = 165

 Score =  111 bits (280), Expect = 2e-32
 Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 20/151 (13%)

Query: 6   KKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHK 63
            K +++RG  + G G     R   H GGRG+AG   H       ++    GK G +   K
Sbjct: 3   SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHE-----FHNHEPLGKSGFKRPQK 57

Query: 64  LRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---------VPMIDVTQFGYFKVLGKGVL 114
           ++ +     +++ ++   V        ++             + +     Y KVLG G +
Sbjct: 58  VQEEAA--TIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQV 115

Query: 115 PENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145
                + + A   S+ A +K++ AGG+V LT
Sbjct: 116 --RHELTLIADDFSEGAREKVEGAGGSVELT 144

>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M Length = 156

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 107 KVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146
           K+L  G +  ++ V V     S  A K ++ AGG VVL  
Sbjct: 107 KLLASGEI--SRAVTVHVDAASAAAIKAVEAAGGRVVLPE 144

>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L 2i2v_L ... Length = 143

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 65  RNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKA 124
           R       + +  L  +    V     K     I   Q  + KV+  G +    PV V+ 
Sbjct: 68  RKAAITAEIRLSDLAKVEGGVVDLNTLKAAN--IIGIQIEFAKVILAGEV--TTPVTVRG 123

Query: 125 KLVSKTAEKKIKEAGGAV 142
             V+K A   I+ AGG +
Sbjct: 124 LRVTKGARAAIEAAGGKI 141

>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ... Length = 150

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 107 KVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 144
           K+LG+G   E +P+ V A   SK+A +K+K AGG  VL
Sbjct: 113 KILGEG---EAKPLKVVAHAFSKSALEKLKAAGGEPVL 147

>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 257

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 72  IVNIDKLWSMVPQ-----DVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKL 126
            VN+  + +   Q      ++   +K  +      +    K+L  G L  ++ + +KA  
Sbjct: 144 NVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGEL--SKKLTIKAGA 201

Query: 127 VSKTAEKKIKEAGGAVVLTA 146
            S +A++K++ AG ++++  
Sbjct: 202 FSTSAKEKLEYAGCSLIVLP 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
3o58_Y	149	60S ribosomal protein L28; ribosomal RNA and prote	100.0
4a17_K	149	L29, RPL27A, 60S ribosomal protein L27A; eukaryoti	100.0
2zkr_l	148	60S ribosomal protein L27A; protein-RNA complex, 6	100.0
3j21_L	147	50S ribosomal protein L15P; archaea, archaeal, KIN	100.0
3iz5_O	144	60S ribosomal protein L27A (L15P); eukaryotic ribo	100.0
1vq8_L	165	50S ribosomal protein L15P; ribosome 50S, protein-	100.0
3r8s_L	143	50S ribosomal protein L15; protein biosynthesis, R	100.0
2zjr_I	156	50S ribosomal protein L15; ribosome, large ribosom	100.0
3v2d_P	150	50S ribosomal protein L15; ribosome associated inh	100.0
3bbo_N	257	Ribosomal protein L15; large ribosomal subunit, sp	99.98
3j21_P	120	50S ribosomal protein L18E; archaea, archaeal, KIN	99.82
1vq8_O	116	50S ribosomal protein L18E; ribosome 50S, protein-	99.75
2zkr_o	188	60S ribosomal protein L18; protein-RNA complex, 60	99.64
3jyw_O	121	60S ribosomal protein L18(A); eukaryotic ribosome,	99.57
3iz5_R	188	60S ribosomal protein L18 (L18E); eukaryotic ribos	99.48
3izc_R	186	60S ribosomal protein RPL18 (L18E); eukaryotic rib	99.46
4a17_N	181	RPL18, 60S ribosomal protein L5; eukaryotic riboso	99.44
1vq8_L	165	50S ribosomal protein L15P; ribosome 50S, protein-	81.32

>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V

Probab=100.00  E-value=2e-53  Score=316.02  Aligned_cols=144  Identities=63%  Similarity=1.099  Sum_probs=135.6

Q ss_pred             CCCcccccccccCccccCCCCCCCCCCCCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhhhh
Q 032139            1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWS   80 (146)
Q Consensus         1 m~~r~kk~rk~RG~~s~G~G~~gq~r~~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L~~   80 (146)
                      ||+|.+|+||+|||+|||||+++|||+|+||+|+||+++|+|+||++|+|.||+|+||++|+..++..++.+|||++||+
T Consensus         1 M~~r~kKtrK~RG~~s~G~G~~gkhR~h~GGrG~AGg~~Hh~~~~~Ky~p~~fGK~G~r~~h~~~n~~~~~~INldkL~~   80 (149)
T 3o58_Y            1 MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWT   80 (149)
T ss_dssp             CCCSSGGGSSSSSCSSSBTTBSCCSSCSSSSSSSCCCSSSSCCCSCCCTTSSSSCCSCCCCCCCCCCCCCCSTTTTHHHH
T ss_pred             CCccccccccccCCCccCCCCCCCCCCCCCCCccccCccceeEEEeeeCCCccCCCCcccCcccccccccceEEHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998766777888999999999


Q ss_pred             hcCcCeecccc----cCCCCeeecCCCCceEEecCCCC-CCCCceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139           81 MVPQDVKAKAS----KDNVPMIDVTQFGYFKVLGKGVL-PENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA  146 (146)
Q Consensus        81 ~~~~~~~i~~~----~~~~~li~~~~~g~vKvLG~G~l-~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~~  146 (146)
                      +++++...+++    +.++++||..+.+|+||||+|+| +  +||+|+|..||++|+|+||+|||+|+++|
T Consensus        81 lv~~~~~~~~a~~~~~~~~~vID~~~~g~vKVLG~G~l~~--~~v~Vka~~fS~~A~ekIe~aGG~~~~~~  149 (149)
T 3o58_Y           81 LIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPN--VPVIVKARFVSKLAEEKIRAAGGVVELIA  149 (149)
T ss_dssp             CSSCCSCSSCTTSSTTSSCCBCCCSSSCSCCCCCCCCCCS--CCEEECSSCCTTTTHHHHGGGSCEEECCC
T ss_pred             HhHHHHhhhhhhhccCCCCcEEEEecccceEEEcCCccCC--CCEEEEEeecCHHHHHHHHHcCCEEEEcC
Confidence            99988777765    26789999999999999999999 7  99999999999999999999999999875

>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K

Probab=100.00  E-value=1.1e-53  Score=318.16  Aligned_cols=144  Identities=65%  Similarity=1.123  Sum_probs=133.2

Q ss_pred             CCCcccccccccCccccCCCCCCCCCC--CCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhh
Q 032139            1 MTTRFKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKL   78 (146)
Q Consensus         1 m~~r~kk~rk~RG~~s~G~G~~gq~r~--~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L   78 (146)
                      ||+|.+|+||+|||+|||||++||||+  |+||+|+|||++|+|+||++|+|+||||+||++|+...++.+|++||||+|
T Consensus         1 m~~r~~K~rk~RG~~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky~p~~fGK~Gfr~~h~~~n~~~~~~VNLdkL   80 (149)
T 4a17_K            1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRTFHLKKNPLHCPVVNIDKL   80 (149)
T ss_dssp             -CGGGSHHHHHTTSSSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHHSTTCSSCCSCCCSSCCCGGGCCCEEEGGGH
T ss_pred             CCccccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCcceEEeeeccCCCcCCCCCccCCCccCCcceeeEEEHHHH
Confidence            999999999999999999999999999  999999999999999999999999999999999876566788999999999


Q ss_pred             hhhcCcCeeccccc--CCCCeeecCCCCceEEecCCCC-CCCCceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139           79 WSMVPQDVKAKASK--DNVPMIDVTQFGYFKVLGKGVL-PENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA  146 (146)
Q Consensus        79 ~~~~~~~~~i~~~~--~~~~li~~~~~g~vKvLG~G~l-~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~~  146 (146)
                      |++++++.+++++.  .++++||..+.+++||||+|+| +  +||+|+|+.||++|+|+||+|||+|+++|
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~vId~~~~g~~KvLG~G~l~~--~~v~v~a~~fS~~A~~kIe~aGG~~~~~~  149 (149)
T 4a17_K           81 WSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLPN--QPVVVKAKYFSKTAERRIVAVGGACVLTA  149 (149)
T ss_dssp             HHHSCHHHHHHHHHCCSSCCEEEHHHHTCCEEECCSCCCS--SCCEEEESEECHHHHHHHHHTTCEEEECC
T ss_pred             HHHhhhhcchhhhhhcCCceEEEeccCCeEEEecCCccCC--CCEEEEEeecCHHHHHHHHHcCCEEEEeC
Confidence            99999887677653  5788999776899999999999 7  99999999999999999999999999875

>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=6.4e-53  Score=314.18  Aligned_cols=143  Identities=64%  Similarity=1.126  Sum_probs=108.8

Q ss_pred             CCCcccccccccCccccCCCCCCCCCCCCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeee-eEEechhhh
Q 032139            1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHC-PIVNIDKLW   79 (146)
Q Consensus         1 m~~r~kk~rk~RG~~s~G~G~~gq~r~~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~-~~INL~~L~   79 (146)
                      |++|++|+|++||++|||||++||||+++||+||||||+|+|+||++|+|+||||+||++++. ....+| .+|||++||
T Consensus         1 m~~r~~k~rk~RG~~t~G~G~~gq~r~~~Gg~G~aGgq~h~~~~~~k~~p~~lpK~GF~~~~~-~~~~~~~~~VNl~~L~   79 (148)
T 2zkr_l            1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMKHYHL-KRNQSFCPTVNLDKPW   79 (148)
T ss_dssp             -----CHHHHTTTTSCSSCCSCSCC--CCSCSSSTTTTTTTCSSCTTTC-------------------CCCCEEETHHHH
T ss_pred             CCCccCCcccCCCCcCcCCCCCCCCCCCCCCCCcccCCCCCEEeccccCCCcCCCCCcCCCCc-cccceecceEEHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998642 111244 899999999


Q ss_pred             hhcCcCeeccccc---CCCCeeecCCCCceEEecCCCCCCCC-ceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139           80 SMVPQDVKAKASK---DNVPMIDVTQFGYFKVLGKGVLPENQ-PVVVKAKLVSKTAEKKIKEAGGAVVLTA  146 (146)
Q Consensus        80 ~~~~~~~~i~~~~---~~~~li~~~~~g~vKvLG~G~l~~~~-~l~Ika~~~S~~A~ekIe~aGG~v~~~~  146 (146)
                      ++++++.+++++.   .++++|+..+.+++||||+|+|+  + ||+|+|++||++|+|+||+|||+|+++|
T Consensus        80 ~l~~~~~~~~~~~~l~~~~~vI~~~~~~~vKVLG~Gel~--k~~l~Vka~~fSk~A~ekIeaAGG~v~~~~  148 (148)
T 2zkr_l           80 TLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLP--KQPVIVKAKFFSRRAEEKIKSVGGACVLVA  148 (148)
T ss_dssp             HHTTTTTSSCTTTTEEEHHHHSTTCSSSCCEEECCSCCC--SSCCEEEESEECHHHHHHHHHTTCEEEEC-
T ss_pred             hhhhcCcEEehhhhccccCCeEeccccCceEEecCCccc--cCCEEEEEEecCHHHHHHHHHcCCEEEecC
Confidence            9988877777763   48889987667899999999999  8 9999999999999999999999999875

>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=5.8e-51  Score=303.05  Aligned_cols=140  Identities=38%  Similarity=0.490  Sum_probs=126.9

Q ss_pred             CCCcccccccccCccccCCCCCCCCCC--CCCcCCcCCC---CCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEec
Q 032139            1 MTTRFKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGG---MHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNI   75 (146)
Q Consensus         1 m~~r~kk~rk~RG~~s~G~G~~gq~r~--~~GgrG~aGg---~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL   75 (146)
                      ||+|++|+||+|||+|||||+++|||+  |+||+|+||+   ++|+|+||++|+|.||||+||++|+  .++.+|.+|||
T Consensus         1 m~~r~~k~rk~rG~~s~g~G~~~khR~~G~~GGrG~aG~g~~~~H~~~~~~ky~p~~~pK~GF~n~~--~~~~~~~~VNL   78 (147)
T 3j21_L            1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRPP--EVQREVRVVNL   78 (147)
T ss_dssp             CCCHHHHHTTTTCCSSTTSCSTTTSCSHHHHTSSTTTTSSCSSSSSSSCSSSSCSCCSCCCSCCCCT--TTCCCCCEEEH
T ss_pred             CCccccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCccCcccEEEEeecCCCcCCcCCCCccc--cccceeEEEEH
Confidence            999999999999999999999999999  9999999999   9999999999999999999999864  24678999999


Q ss_pred             hhhhhhcCcCeeccccc--CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           76 DKLWSMVPQDVKAKASK--DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        76 ~~L~~~~~~~~~i~~~~--~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      ++||+++++..+..+..  .+..+||..+++ +||||+|+|+  +||+|+|+.||++|+|+||+|||+|+++
T Consensus        79 ~~L~~l~~~L~~~gli~~~~~~~vid~~~~G-vKVLG~G~l~--~~v~Vka~~fS~~A~ekIeaaGG~v~~~  147 (147)
T 3j21_L           79 KFIDEHLDELMQMGIAYEEGGKIIVDVTQFA-DKVLGTGKLT--RPLVIKARAFSPKAEEKIKAAGGEAVLV  147 (147)
T ss_dssp             HHHHHTTTTTTTSCCCSSSSBSEEEEGGGGC-CEEECCSCCS--SCEEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHHHHHHcCcccccCCcceecccccC-cEEecCCccC--cCEEEEEEecCHHHHHHHHHcCCEEEeC
Confidence            99999988654444432  567788988788 9999999999  9999999999999999999999999874

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...

Probab=100.00  E-value=1e-38  Score=241.23  Aligned_cols=129  Identities=26%  Similarity=0.399  Sum_probs=111.0

Q ss_pred             ccccccccCccccCCCCCCCCCC--CCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhhhhhc
Q 032139            5 FKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMV   82 (146)
Q Consensus         5 ~kk~rk~RG~~s~G~G~~gq~r~--~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L~~~~   82 (146)
                      .+|+++.||+++||+|+.|++|+  |+||++++|+++|+|++|.+     |||+||++|+  .++.+|.+|||++||+++
T Consensus         2 ~~k~~k~R~gRg~GsG~~GKt~grGhkGqk~raGg~~~~~~pl~k-----lPK~GF~~~~--~~r~~~~~VNL~~L~~l~   74 (165)
T 1vq8_L            2 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEP-----LGKSGFKRPQ--KVQEEAATIDVREIDENV   74 (165)
T ss_dssp             CCHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTTTTTTTTCTTSCC-----SCCCCCCCCG--GGCCCEEEEEHHHHHHTT
T ss_pred             CccccCcCCccCCCCCCCCCCCCCCCCCcccccCCCcCCCceeeE-----CCCCCCccCC--cccceeeeEEHHHHHHHH
Confidence            46788999999999999999998  99999999999999887654     8999999864  234679999999999987


Q ss_pred             C-----------cCe-eccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139           83 P-----------QDV-KAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA  146 (146)
Q Consensus        83 ~-----------~~~-~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~~  146 (146)
                      +           ++. +||+++ .++++|.    ++|||||+|+|+  +||+|+|++||++|+|+||+|||+|++++
T Consensus        75 ~~~~~~g~~~~~~~~~vId~~~L~~~gli~----~~vKVLG~G~l~--k~l~Vka~~fSk~A~ekIeaAGG~v~~i~  145 (165)
T 1vq8_L           75 TLLAADDVAEVEDGGFRVDVRDVVEEADDA----DYVKVLGAGQVR--HELTLIADDFSEGAREKVEGAGGSVELTD  145 (165)
T ss_dssp             GGGTTSCCCC-----CEEEGGGTCTTCTTS----SEEEEECCSCCC--SCCEEEESEECHHHHHHHHHTTCEEEECT
T ss_pred             HHhhhccccccCCCCeEECHHHHHHCCccC----CceEEecCCccC--CCEEEEEEecCHHHHHHHHHcCCEEEEee
Confidence            3           332 577776 7788872    689999999999  99999999999999999999999999863

>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...

Probab=100.00  E-value=2e-35  Score=218.40  Aligned_cols=122  Identities=26%  Similarity=0.403  Sum_probs=103.3

Q ss_pred             cccccccccCccc-----cCCCCCCCCCCCCCc--CCcCCCCCceeeeecccCCCC--CccCCcCCCCCCCCCeeeeEEe
Q 032139            4 RFKKNRKKRGHVS-----AGHGRIGKHRKHPGG--RGNAGGMHHHRILFDKYHPGF--FGKVGMRYFHKLRNKFHCPIVN   74 (146)
Q Consensus         4 r~kk~rk~RG~~s-----~G~G~~gq~r~~~Gg--rG~aGg~~h~~~~~~~~~p~~--~~K~GF~~f~~~~~~~~~~~IN   74 (146)
                      +++++|.+||++|     ||+|++||.+++.+.  .||||||          ||+|  +||+||++    .++.+|.+||
T Consensus        12 ~k~~kRvGRG~gsG~Gkt~GrG~KGqkaRsG~~~~~gFEGGQ----------~Pl~rRlPK~GF~~----~~~~~y~~VN   77 (143)
T 3r8s_L           12 KKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQ----------MPLYRRLPKFGFTS----RKAAITAEIR   77 (143)
T ss_dssp             SCCCCCCSSCSTTSSCSGGGSCSSSTTTSTTCCCCTTCCTTS----------CCHHHHSCCCCCCC----STGGGEEECC
T ss_pred             CcCcccccCcCCCCCCCCCCCCCCCCcCCCCCCCCCccccCC----------CccEEEccccccCC----cccceeEEEE
Confidence            4556788999765     899999998875332  3999999          6664  88999997    4578999999


Q ss_pred             chhhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEE
Q 032139           75 IDKLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL  144 (146)
Q Consensus        75 L~~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~  144 (146)
                      |++|+++ + +.+||+++ .++++|... ..+|||||+|+|+  +||+|+|++||++|+|+||+|||+|++
T Consensus        78 L~~L~~~-~-~~~I~~~~L~~~glv~~~-~~~VKVLg~Gel~--~~l~V~a~~~SksA~ekIEaAGG~v~~  143 (143)
T 3r8s_L           78 LSDLAKV-E-GGVVDLNTLKAANIIGIQ-IEFAKVILAGEVT--TPVTVRGLRVTKGARAAIEAAGGKIEE  143 (143)
T ss_dssp             SSSSSCS-S-SSEEEHHHHGGGTSSCTT-CCEEECCCCSCCC--SCCEEESSCCCHHHHHHHHTTTCEEEC
T ss_pred             HHHhhhc-c-CCeecHHHHHHcCccccC-CCceEEeeCCccc--ccEEEEEEecCHHHHHHHHHcCCEEeC
Confidence            9999885 4 35899998 999999876 4579999999999  999999999999999999999999973

>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M

Probab=100.00  E-value=1e-35  Score=222.90  Aligned_cols=122  Identities=24%  Similarity=0.323  Sum_probs=103.9

Q ss_pred             cccccccccCcc----ccCCCCCCCCCCCCC--cCCcCCCCCceeeeecccCCCC--CccCCcCCCCCCCCCeeeeEEec
Q 032139            4 RFKKNRKKRGHV----SAGHGRIGKHRKHPG--GRGNAGGMHHHRILFDKYHPGF--FGKVGMRYFHKLRNKFHCPIVNI   75 (146)
Q Consensus         4 r~kk~rk~RG~~----s~G~G~~gq~r~~~G--grG~aGg~~h~~~~~~~~~p~~--~~K~GF~~f~~~~~~~~~~~INL   75 (146)
                      +++++|.+||++    |||+|++||++++.+  .+||||||          ||+|  |||+||++     ++.+|.+|||
T Consensus        13 ~~~~kRvGRG~gg~Gkt~GrG~KGqk~RsG~~~~~gfEGGQ----------~Pl~rrlPK~GF~n-----~~~~~~~VNL   77 (156)
T 2zjr_I           13 RKDRKRVGRGPGGTDKTAGRGHKGQKSRSGAGKGAFFEGGR----------SRLIARLPKRGFNN-----VGTTYEVVKL   77 (156)
T ss_dssp             TTCCCCSSSCCCCCCSCSSSCCCCSSSSSCCSCCCSCSCCS----------SSSTTTSCCCCCCC-----CCCCCCEECH
T ss_pred             ccCCcccCCCCCCCCCcCCCCCCCCCCCCCCCCCCceEcCc----------CCCeEecCCCCCcC-----CceEEEeech
Confidence            455678889964    689999999888543  35999998          7886  99999996     3578999999


Q ss_pred             hhhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           76 DKLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        76 ~~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      ++||++++.+  ||+++ .++++|+.. .++|||||+|+|+  +||+|+|++||++|+|+||+|||+|+++
T Consensus        78 ~~L~~l~~~~--i~~~~L~~~gli~~~-~~~vKVLG~G~l~--~~l~Vka~~fSk~A~ekIEaAGG~v~~i  143 (156)
T 2zjr_I           78 SQLQDLEDTT--FDRDTLEAYRLVRRK-NRPVKLLASGEIS--RAVTVHVDAASAAAIKAVEAAGGRVVLP  143 (156)
T ss_dssp             HHHTTSCCCC--CCTTTTHHHHHCCCC-SSCCEECCCCCCC--CCCCCCCSEECHHHHHHHGGGSCCCCCC
T ss_pred             hHHHhhhcCC--cCHHHHHhCCcEecc-ccceEEeeCCccC--cCeEEEEEecCHHHHHHHHHcCCEEEEe
Confidence            9999876644  88887 888999876 4689999999999  9999999999999999999999999875

>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...

Probab=100.00  E-value=2e-33  Score=208.81  Aligned_cols=124  Identities=27%  Similarity=0.323  Sum_probs=103.6

Q ss_pred             cccccccccCccc-----cCCCCCCCCCCCCCc--C-CcCCCCCceeeeecccCCCC--CccCCcCCC-CCCCCCeeeeE
Q 032139            4 RFKKNRKKRGHVS-----AGHGRIGKHRKHPGG--R-GNAGGMHHHRILFDKYHPGF--FGKVGMRYF-HKLRNKFHCPI   72 (146)
Q Consensus         4 r~kk~rk~RG~~s-----~G~G~~gq~r~~~Gg--r-G~aGg~~h~~~~~~~~~p~~--~~K~GF~~f-~~~~~~~~~~~   72 (146)
                      +++++|++||++|     ||+|++||.+++.+.  . ||||||          ||+|  +||+||++. +..+++.+|.+
T Consensus        13 ~k~~kRvGRG~gSG~GkT~GrG~KGqkaRsg~~~~~~gFEGGQ----------~Pl~rRlPK~GF~~~~~~~~~~~~y~~   82 (150)
T 3v2d_P           13 NKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGR----------STTLMRLPKRGMQGQVPGEIKRPRYQG   82 (150)
T ss_dssp             SCCCCCCSSCTTTSCCTTTTCCSSSTTTSTTCCSCTTTCCTTS----------CCTTTTSCCCSCCCCTTCCCCCCCEEE
T ss_pred             CcCCccccCCCCCCCCccCCCCCCcCcCCCCCCCCCccccCCC----------CccEEEcCccCccCccccccccceEEE
Confidence            4556788999865     899999998886432  3 899999          6764  899999972 00135788999


Q ss_pred             EechhhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           73 VNIDKLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        73 INL~~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      |||++|++ |+ + +||+++ .++++|... + +|||||+|+|+   ||+|+|++||++|+|+||+|||+|+++
T Consensus        83 VNL~~L~~-~~-G-~I~~~~L~~~glv~~~-~-~VKvLg~G~l~---~v~V~a~~~S~~A~~kIe~aGG~v~~~  148 (150)
T 3v2d_P           83 VNLKDLAR-FE-G-EVTPELLVRAGLLKKG-Y-RLKILGEGEAK---PLKVVAHAFSKSALEKLKAAGGEPVLL  148 (150)
T ss_dssp             EEHHHHTT-CC-S-EECHHHHHTTTSSCTT-C-EEEEECSSCCC---SCEECBSCBCHHHHHHHHHTTCBCCBC
T ss_pred             EEHHHHhh-cC-C-cccHHHHHHCCCcccc-c-ceEEEecCCcc---cEEEEEEEcCHHHHHHHHHcCCEEEEe
Confidence            99999998 77 6 899998 999999764 4 89999999988   999999999999999999999999876

>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.98  E-value=2.3e-34  Score=229.55  Aligned_cols=129  Identities=23%  Similarity=0.294  Sum_probs=109.2

Q ss_pred             cccccccccCcc-----ccCCCCCCCCCCCC--CcCCcCCCCCceeeeecccCCCC--Ccc-CCcCCCCCCCCCeeeeEE
Q 032139            4 RFKKNRKKRGHV-----SAGHGRIGKHRKHP--GGRGNAGGMHHHRILFDKYHPGF--FGK-VGMRYFHKLRNKFHCPIV   73 (146)
Q Consensus         4 r~kk~rk~RG~~-----s~G~G~~gq~r~~~--GgrG~aGg~~h~~~~~~~~~p~~--~~K-~GF~~f~~~~~~~~~~~I   73 (146)
                      +++++|++||++     |||+|++||++++.  ...||+|||          ||+|  ||| +||+++++ .++.+|.+|
T Consensus        77 ~k~kkRvGRG~GSG~GKT~GRGhKGQkaRsG~~~r~GFEGGQ----------mPl~rRlPK~rGF~n~~~-~~r~~y~~V  145 (257)
T 3bbo_N           77 RKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQ----------MPLYRRLPKLRGIAGGMH-AGLPKYVNV  145 (257)
T ss_dssp             CSCCCCCSSCCCCSCSSSCSSSCCCCGGGTSSCSSTTCCSSC----------SSTTSCCCCCSSCCCCCS-SCCSSSSCS
T ss_pred             ccCCcCCcCcCCCCCCCcCCCCCCCCcCcCCCCCCCceecCC----------CcchhhcccccccCCccc-cCcceeeeE
Confidence            456778999964     59999999988853  235999999          7775  899 89998543 245789999


Q ss_pred             echhhhhh-cCcCeeccccc-CCCCeeecC---CCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           74 NIDKLWSM-VPQDVKAKASK-DNVPMIDVT---QFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        74 NL~~L~~~-~~~~~~i~~~~-~~~~li~~~---~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      ||++||++ ++++.+||+++ .++++|+..   ..++|||||+|+|+  +||+|+|+.||++|+|+||+|||+|+++
T Consensus       146 NL~kL~~lr~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~GeLt--kkLtVkA~~fSksA~eKIEaAGG~v~~i  220 (257)
T 3bbo_N          146 NLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELS--KKLTIKAGAFSTSAKEKLEYAGCSLIVL  220 (257)
T ss_dssp             CSSCCSCSSTTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCC--SSCCCCSSCCTGGGTTSSTTTTCCEECC
T ss_pred             eHHHHhhcccCCCCEeCHHHHHhCCcccccccccCccEEEEeCCccC--CCeEEEEEecCHHHHHHHHHcCCEEEEe
Confidence            99999987 88888999987 899999763   24689999999999  9999999999999999999999999875

>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.82  E-value=2e-21  Score=139.66  Aligned_cols=75  Identities=29%  Similarity=0.231  Sum_probs=64.6

Q ss_pred             CCCC--CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEec
Q 032139           49 HPGF--FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKL  126 (146)
Q Consensus        49 ~p~~--~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~  126 (146)
                      +|.|  +||+||++      +.+|.+|||++|+++++++.+|+          .    ++||||+|+++  +||+|+|++
T Consensus        27 ~Pl~rrlpKrgF~~------r~~~~~VnL~~L~~~~~~g~~i~----------~----~vKVLg~G~l~--~kl~V~a~~   84 (120)
T 3j21_P           27 VKIWKDVAWRLERP------RRQRAEVNVSKINRYANDGEMIV----------V----PGSVLGAGKLE--KKVIVAAWK   84 (120)
T ss_dssp             CSHHHHHHHHHHSC------TTSSEEEEHHHHTTSSCTTCEEE----------E----EEEEECSSCCC--SCCEEEEEE
T ss_pred             CcHHHHHHhhcCCC------CCcceeEEHHHHHHHHhcCCEEE----------E----EEEEcCCCeec--CCEEEEEec
Confidence            5664  89999986      46689999999999887654333          1    58999999999  999999999


Q ss_pred             cCHHHHHHHHHcCCEEEEc
Q 032139          127 VSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus       127 ~S~~A~ekIe~aGG~v~~~  145 (146)
                      ||++|+|+||+|||+|+++
T Consensus        85 fS~~A~ekIe~AGG~v~~~  103 (120)
T 3j21_P           85 FSETARRKIIEAGGEAITI  103 (120)
T ss_dssp             ECHHHHHHHTTTSSCEEES
T ss_pred             cCHHHHHHHHHcCCEEEEe
Confidence            9999999999999999976

>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...

Probab=99.75  E-value=5.1e-19  Score=126.41  Aligned_cols=74  Identities=28%  Similarity=0.281  Sum_probs=62.5

Q ss_pred             CCCC--CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEec
Q 032139           49 HPGF--FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKL  126 (146)
Q Consensus        49 ~p~~--~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~  126 (146)
                      ||++  +||+|  +    .++.+|.+|||++|+++++++.+|        +|      ++||||+|+++  +||+|+|++
T Consensus        24 ~Pl~rRlPKrG--~----~~~~~~~~VnL~~L~~~~~~g~~i--------lv------~vKVLg~G~l~--k~l~V~a~~   81 (116)
T 1vq8_O           24 GAVWGDVAERL--E----KPRRTHAEVNLGRIERYAQEDETV--------VV------PGKVLGSGVLQ--KDVTVAAVD   81 (116)
T ss_dssp             CHHHHHHHHHH--T----SCTTTSEEEEHHHHHHHCCTTSEE--------EE------EEEEECCSCCC--SCCEEEEEE
T ss_pred             CCHhhhcccCC--C----CCCceeeeEeHHHHHHHccCCCEE--------EE------EEEEeeCCeec--CCEEEEEEe
Confidence            6764  89999  3    235789999999999988765332        22      69999999999  999999999


Q ss_pred             cCHHHHHHHHHcCCEEEEc
Q 032139          127 VSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus       127 ~S~~A~ekIe~aGG~v~~~  145 (146)
                      ||++|+|+||+| |+|+++
T Consensus        82 fSk~A~ekIeaA-G~v~~~   99 (116)
T 1vq8_O           82 FSGTAETKIDQV-GEAVSL   99 (116)
T ss_dssp             ECHHHHHHHHHH-SEEEEH
T ss_pred             cCHHHHHHHHHc-CeEEEh
Confidence            999999999999 999864

>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.64  E-value=4.3e-17  Score=124.65  Aligned_cols=74  Identities=16%  Similarity=0.083  Sum_probs=59.3

Q ss_pred             CccCCcCCCCCCCCCeeeeEEechhhhhhcC-cCeecccccCCCCeeecCCCCceEEecCCCCCCCC--ceEEEEeccCH
Q 032139           53 FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVP-QDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQ--PVVVKAKLVSK  129 (146)
Q Consensus        53 ~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~-~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~--~l~Ika~~~S~  129 (146)
                      +||+||.+      +.+|.+|||++|+++.. ++.       +..++    ...+||||+|+|+  +  +|+|+|++||+
T Consensus        47 lpKRgF~s------r~~y~~VNLs~L~~~~~~~g~-------~~~ii----v~~~KVLg~GeL~--kvpkLtV~A~~fSk  107 (188)
T 2zkr_o           47 VLKRLFMS------RTNRPPLSLSRMIRKMKLPGR-------ENKTA----VVVGTVTDDVRIL--EVPKLKVCALRVSS  107 (188)
T ss_dssp             HHHHHHSC------TTTSCEEEHHHHHSCSSSCCS-------TTSEE----EEEEEEECSSCCC--CCSSCCEEEEEECH
T ss_pred             HHHhhCCC------ccceeeeeHHHHHHHhhhcCC-------CCcEE----EeecEEECCceec--ccCCeEEEEeecCH
Confidence            89999986      46789999999987541 111       11122    1247999999999  9  99999999999


Q ss_pred             HHHHHHHHcCCEEEEc
Q 032139          130 TAEKKIKEAGGAVVLT  145 (146)
Q Consensus       130 ~A~ekIe~aGG~v~~~  145 (146)
                      +|+|+||+|||+|+++
T Consensus       108 sArekIEaAGG~v~~i  123 (188)
T 2zkr_o          108 RARSRILKAGGKILTF  123 (188)
T ss_dssp             HHHHHHHHHSSCEEEH
T ss_pred             HHHHHHHHcCCEEEEh
Confidence            9999999999999865

>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O

Probab=99.57  E-value=6.3e-17  Score=116.22  Aligned_cols=77  Identities=19%  Similarity=0.125  Sum_probs=59.2

Q ss_pred             CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHH
Q 032139           53 FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAE  132 (146)
Q Consensus        53 ~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~  132 (146)
                      +||+||.+      +.+|.+|||++|+++++...      .+...+    ..++||||+|+|+-.++++|+|++||++|+
T Consensus        28 vpKRgF~s------r~~~~~VnLs~L~~~~~~~g------~~g~~v----vv~~KVlg~G~l~~~~kl~V~a~~fS~~A~   91 (121)
T 3jyw_O           28 VLKALFLS------KINRPPVSVSRIARALKQEG------AANKTV----VVVGTVTDDARIFEFPKTTVAALRFTAGAR   91 (121)
T ss_dssp             HHHTTTSC------STTSCCBCHHHHHHHTTTTS------CSSSEE----EESSCBCCCSCCCSSSCCCEECSSBCTTTT
T ss_pred             HHHHHCCC------CCccceEEHHHHHHHhhccC------CCCCEE----EEEEEEcCCceEcccCCEEEEEEecCHHHH
Confidence            78999986      36789999999999876200      001111    125799999999611389999999999999


Q ss_pred             HHHHHcCCEEEEc
Q 032139          133 KKIKEAGGAVVLT  145 (146)
Q Consensus       133 ekIe~aGG~v~~~  145 (146)
                      ++||+|||+|+++
T Consensus        92 ~kIe~AGG~~~~~  104 (121)
T 3jyw_O           92 AKIVKAGGECITL  104 (121)
T ss_dssp             THHHHHTCCBCCS
T ss_pred             HHHHHcCCEEEEH
Confidence            9999999999865

>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N

Probab=99.44  E-value=2.2e-14  Score=108.95  Aligned_cols=76  Identities=17%  Similarity=0.142  Sum_probs=58.7

Q ss_pred             CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHH
Q 032139           53 FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAE  132 (146)
Q Consensus        53 ~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~  132 (146)
                      .+|++|.+      +..|.+|||++|++++++. +    ..+ .+|     .++||||+|+|+-.++|+|.|.+||++|+
T Consensus        49 V~KRLf~s------r~nr~pVnLsrI~r~~~~~-e----~gk-~vV-----v~gKVLg~G~l~~v~kl~V~A~~fS~sA~  111 (181)
T 4a17_N           49 ILKRLSSS------RLNKFPLSLSRIVKNLNET-N----KEQ-VIV-----STSTVTNDERLLTVPKLTVCALKFTETAR  111 (181)
T ss_dssp             HHHHHSCC------GGGSCCEEHHHHHHSCCHH-H----HHS-EEE-----ESSEEECCTTCCSCCCCEEECSEECHHHH
T ss_pred             HHHHHcCC------ccccCcccHHHHHHHhccc-c----CCC-EEE-----EEEEEcCCceEcccCCEEEEEeecCHHHH
Confidence            67899985      4578899999999987631 0    001 112     15799999999512469999999999999


Q ss_pred             HHHHHcCCEEEEc
Q 032139          133 KKIKEAGGAVVLT  145 (146)
Q Consensus       133 ekIe~aGG~v~~~  145 (146)
                      ++||+|||+|+++
T Consensus       112 ekIe~AGG~v~~~  124 (181)
T 4a17_N          112 KRILAAGGKCLTF  124 (181)
T ss_dssp             HHHHTTTCEEECH
T ss_pred             HHHHHcCCEEEEh
Confidence            9999999999865

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...

Probab=81.32  E-value=0.39  Score=35.43  Aligned_cols=28  Identities=32%  Similarity=0.471  Sum_probs=22.4

Q ss_pred             CCCcccccccccCccc------cCCCCCCCCCCC
Q 032139            1 MTTRFKKNRKKRGHVS------AGHGRIGKHRKH   28 (146)
Q Consensus         1 m~~r~kk~rk~RG~~s------~G~G~~gq~r~~   28 (146)
                      |.++.+|.|..||++|      ||+|+.||+.++
T Consensus         1 m~~k~~k~R~gRg~GsG~~GKt~grGhkGqk~ra   34 (165)
T 1vq8_L            1 MTSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDA   34 (165)
T ss_dssp             -CCHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTT
T ss_pred             CCccccCcCCccCCCCCCCCCCCCCCCCCccccc
Confidence            7889999999999754      799999986664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1vqol1	150	c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {A	2e-18
d2j01p1	146	c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T	1e-11
d2gycj1	140	c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {E	2e-06
d1vqoo1	115	c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeo	6e-05
d2zjri1	141	c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {D	6e-05

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 74.3 bits (182), Expect = 2e-18
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 16/148 (10%)

Query: 7   KNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKL 64
           K +++RG  + G G     R   H GGRG+AG   H    F  + P   GK G +   K+
Sbjct: 3   KKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHE---FHNHEP--LGKSGFKRPQKV 57

Query: 65  RNKF-HCPIVNIDKLWSMVPQDVKAKASKDNV------PMIDVTQFGYFKVLGKGVLPEN 117
           + +     +  ID+  +++  D  A+             + +     Y KVLG G +   
Sbjct: 58  QEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVR-- 115

Query: 118 QPVVVKAKLVSKTAEKKIKEAGGAVVLT 145
             + + A   S+ A +K++ AGG+V LT
Sbjct: 116 HELTLIADDFSEGAREKVEGAGGSVELT 143

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

 Score = 56.2 bits (135), Expect = 1e-11
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 6/141 (4%)

Query: 4   RFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHK 63
             ++ R  RG  S GHG+    R H G +  +GG+   R                    +
Sbjct: 9   NKRRKRVGRGPGS-GHGKTAT-RGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPKRGMQGQ 66

Query: 64  LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVK 123
           +  +   P      L  +   + +    +  V    + +    K+LG+G   E +P+ V 
Sbjct: 67  VPGEIKRPRYQGVNLKDLARFEGE-VTPELLVRAGLLKKGYRLKILGEG---EAKPLKVV 122

Query: 124 AKLVSKTAEKKIKEAGGAVVL 144
           A   SK+A +K+K AGG  VL
Sbjct: 123 AHAFSKSALEKLKAAGGEPVL 143

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

 Score = 42.3 bits (99), Expect = 2e-06
 Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 9/139 (6%)

Query: 4   RFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHK 63
           +    R  RG  S G G+ G  R H G +  +GG    R  F+      + ++    F  
Sbjct: 10  KKAGKRLGRGIGS-GLGKTGG-RGHKGQKSRSGG--GVRRGFEGGQMPLYRRLPKFGFTS 65

Query: 64  LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVK 123
            +      I  +  L  +    V     K     I   Q  + KV+  G +    PV V+
Sbjct: 66  RKAAITAEI-RLSDLAKVEGGVVDLNTLKAA--NIIGIQIEFAKVILAGEV--TTPVTVR 120

Query: 124 AKLVSKTAEKKIKEAGGAV 142
              V+K A   I+ AGG +
Sbjct: 121 GLRVTKGARAAIEAAGGKI 139

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 107 KVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 144
           KVLG GVL   + V V A   S TAE KI + G AV L
Sbjct: 63  KVLGSGVL--QKDVTVAAVDFSGTAETKIDQVGEAVSL 98

>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 38.4 bits (89), Expect = 6e-05
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 11/141 (7%)

Query: 6   KKNRKKRGHVSAGHGR-IGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKL 64
           +K+RK+ G    G  +  G+  K    R  AG          +       K G       
Sbjct: 10  RKDRKRVGRGPGGTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARL-PKRGFNNVGTT 68

Query: 65  RNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKA 124
                  +V + +L  +          +     +   +    K+L  G +  ++ V V  
Sbjct: 69  YE-----VVKLSQLQDLEDTTFDRDTLEAY--RLVRRKNRPVKLLASGEI--SRAVTVHV 119

Query: 125 KLVSKTAEKKIKEAGGAVVLT 145
              S  A K ++ AGG VVL 
Sbjct: 120 DAASAAAIKAVEAAGGRVVLP 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1vqol1	150	Ribosomal protein L15 (L15p) {Archaeon Haloarcula	99.97
d2zjri1	141	Ribosomal protein L15 (L15p) {Deinococcus radiodur	99.97
d2j01p1	146	Ribosomal protein L15 (L15p) {Thermus thermophilus	99.97
d2gycj1	140	Ribosomal protein L15 (L15p) {Escherichia coli [Ta	99.96
d1vqoo1	115	Ribosomal protein L18e {Archaeon Haloarcula marism	99.34
d1vqol1	150	Ribosomal protein L15 (L15p) {Archaeon Haloarcula	97.39

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.97  E-value=7.6e-32  Score=198.19  Aligned_cols=129  Identities=29%  Similarity=0.450  Sum_probs=102.3

Q ss_pred             ccccccCccccCCCCCCCCCC--CCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhhhhhcCc
Q 032139            7 KNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQ   84 (146)
Q Consensus         7 k~rk~RG~~s~G~G~~gq~r~--~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~   84 (146)
                      |+++.|+.++||||+.++|++  |+|+++++|+.+|   +|++|+|  |||+||.+++  .+..+|.+|||.+|+++++.
T Consensus         3 kk~k~R~gRg~G~G~~~~~~GrG~KGqk~rsG~~~~---~f~g~~~--lpK~g~~~~~--~~~~~~~~inl~~L~~~~~~   75 (150)
T d1vqol1           3 KKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKH---EFHNHEP--LGKSGFKRPQ--KVQEEAATIDVREIDENVTL   75 (150)
T ss_dssp             TGGGCTTCSSTTCSSTTSSSSGGGGTSSTTTTTTTT---TCTTSCC--SSCCCCCCCG--GGCCCEEEEEHHHHHHTTTT
T ss_pred             ccccccCCcCcCCCCCCCCCCCCCCCCCCcccCccC---CCcCCcc--CCccCccccc--cccceeeeccHHHHHHHHhh
Confidence            456778888889998888666  8999999998766   5778886  7999998753  34677889999999998875


Q ss_pred             Ceeccccc----------CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           85 DVKAKASK----------DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        85 ~~~i~~~~----------~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      ....+.++          .+..++.. ..++|||||+|+|+  .||+|+|++||++|+|+||+|||+|+++
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vKlLG~G~l~--~~l~Ika~~~S~sA~ekIe~aGG~v~l~  143 (150)
T d1vqol1          76 LAADDVAEVEDGGFRVDVRDVVEEAD-DADYVKVLGAGQVR--HELTLIADDFSEGAREKVEGAGGSVELT  143 (150)
T ss_dssp             CTTSCCCC-----CEEEGGGTCTTCS-SSSEEEEECCSCCC--SCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred             hccccccccccchhhHHHHhhccccc-cccceEEecCCccC--cCEEEEEEEcCHHHHHHHHHcCCEEEEe
Confidence            54333321          12223222 35789999999999  9999999999999999999999999987

>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.97  E-value=1.3e-32  Score=201.17  Aligned_cols=122  Identities=24%  Similarity=0.333  Sum_probs=100.2

Q ss_pred             cccccccccCc----cccCCCCCCCCCCCCC--cCCcCCCCCceeeeecccCCCC--CccCCcCCCCCCCCCeeeeEEec
Q 032139            4 RFKKNRKKRGH----VSAGHGRIGKHRKHPG--GRGNAGGMHHHRILFDKYHPGF--FGKVGMRYFHKLRNKFHCPIVNI   75 (146)
Q Consensus         4 r~kk~rk~RG~----~s~G~G~~gq~r~~~G--grG~aGg~~h~~~~~~~~~p~~--~~K~GF~~f~~~~~~~~~~~INL   75 (146)
                      +++++|++||+    .|||+|++||++++..  ..+|+|||          ||+|  +||+||++|     ...|.+|||
T Consensus        10 ~~~~kR~gRG~gg~Gkt~GrG~KGqk~RsG~~~~~gfeGGQ----------~Pl~rrlPKrGf~~~-----~~~~~~inl   74 (141)
T d2zjri1          10 RKDRKRVGRGPGGTDKTAGRGHKGQKSRSGAGKGAFFEGGR----------SRLIARLPKRGFNNV-----GTTYEVVKL   74 (141)
T ss_dssp             TTCCCCSSSCCCCCCSCSSSCCCCSSSSSCCSCCCSCSCCS----------SSSTTTSCCCCCCCC-----CCCCCEECH
T ss_pred             ccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccc----------ccceecCCccCCCcc-----cceEEEEEh
Confidence            44566888986    5799999999887433  34899999          5553  789999874     356889999


Q ss_pred             hhhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           76 DKLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        76 ~~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      ++|+++++  .++|.++ .+.++|... ..+|||||+|+|+  ++|+|+|++||++|+++||+|||+|+++
T Consensus        75 ~~l~~~~~--~~i~~~~L~~~~li~~~-~~~VKiLg~Gel~--~kl~I~v~~~S~sA~~~IE~aGG~V~l~  140 (141)
T d2zjri1          75 SQLQDLED--TTFDRDTLEAYRLVRRK-NRPVKLLASGEIS--RAVTVHVDAASAAAIKAVEAAGGRVVLP  140 (141)
T ss_dssp             HHHTTSCC--CCCCTTTTHHHHHCCCC-SSCCEECCCCCCC--CCCCCCCSEECHHHHHHHGGGSCCCCCC
T ss_pred             hhhhcccc--cchhhhhhhhhceeccC-CCCeEEccCCccc--CCEEEEEEEeCHHHHHHHHHCCCEEEee
Confidence            99998754  3577776 778888766 4579999999999  9999999999999999999999999865

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=3.2e-31  Score=194.65  Aligned_cols=124  Identities=26%  Similarity=0.291  Sum_probs=99.2

Q ss_pred             cccccccccCcc-----ccCCCCCCCCCCCC---CcCCcCCCCCceeeeecccCCCC--CccCCcCCCCCC-CCCeeeeE
Q 032139            4 RFKKNRKKRGHV-----SAGHGRIGKHRKHP---GGRGNAGGMHHHRILFDKYHPGF--FGKVGMRYFHKL-RNKFHCPI   72 (146)
Q Consensus         4 r~kk~rk~RG~~-----s~G~G~~gq~r~~~---GgrG~aGg~~h~~~~~~~~~p~~--~~K~GF~~f~~~-~~~~~~~~   72 (146)
                      +++++|++||++     |||||++||++++.   ..+||+|||          ||+|  +||+||+++... .+...|.+
T Consensus         9 ~k~~kR~GRG~gsg~Gkt~GrG~kGqkaRsG~~~~~~gFEGGQ----------~Pl~rrlPK~Gf~~~~~~~~~~~~~~~   78 (146)
T d2j01p1           9 NKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGR----------STTLMRLPKRGMQGQVPGEIKRPRYQG   78 (146)
T ss_dssp             SSCCCCCCCCSCSSSSSCTTCSSCCSSSCSSCCCCSSSCCSSS----------CTTCCSCCCCCSCCCSSCSCCCCCEEE
T ss_pred             CcCcccccCCCCCCCCccCCCCCCCCCcCCCCCcCCchhccCC----------CCceeccchhhhhcccccceeeEEeeh
Confidence            567888999974     48999999987743   234899999          5664  889999986432 24677889


Q ss_pred             EechhhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139           73 VNIDKLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT  145 (146)
Q Consensus        73 INL~~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~  145 (146)
                      |||++|+++ +  ..++.++ .++++|...  .+|||||+|+++   ||+|+|++||++|+|+||+|||+|++|
T Consensus        79 inl~~l~~~-~--~~~~~~~l~~~glik~~--~~vKvLg~Ge~k---~i~I~v~~~SksA~ekIEkaGG~v~il  144 (146)
T d2j01p1          79 VNLKDLARF-E--GEVTPELLVRAGLLKKG--YRLKILGEGEAK---PLKVVAHAFSKSALEKLKAAGGEPVLL  144 (146)
T ss_dssp             EETTTTTTS-C--SCCCTTTTTTSSSCSSC--CEEEEECSSCCC---SSCCCCSBCCHHHHHHHHTSCCCCCCC
T ss_pred             hhhhhhhhc-c--cchhhHHHHHhCccccC--ceEEEecCCceE---eEEEEEEEeCHHHHHHHHHcCCEEEEe
Confidence            999999875 3  2466666 889998755  369999999964   899999999999999999999999987

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.3e-32  Score=198.57  Aligned_cols=123  Identities=24%  Similarity=0.335  Sum_probs=99.2

Q ss_pred             cccccccccCcc-----ccCCCCCCCCCCCCC--cCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEech
Q 032139            4 RFKKNRKKRGHV-----SAGHGRIGKHRKHPG--GRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNID   76 (146)
Q Consensus         4 r~kk~rk~RG~~-----s~G~G~~gq~r~~~G--grG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~   76 (146)
                      +++++|++||++     |||+|+.||++++.+  ..||+|||+|++.        .+||+||++    .+...|.+|||+
T Consensus        10 ~k~~kR~gRG~gsg~Gkt~GrG~kGqk~R~g~~~r~gfEGGQ~Pl~r--------r~PK~Gf~~----~~~~~~~~i~l~   77 (140)
T d2gycj1          10 KKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYR--------RLPKFGFTS----RKAAITAEIRLS   77 (140)
T ss_dssp             SSCSCCSSSCCCSSSCCSSCSSCCCCSCCSSCSSSCSCCSSCSSSSS--------SSSSCCCCC----CCCCCCCCBCCS
T ss_pred             ccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccee--------eCceeeccc----cccceeeeEEee
Confidence            455678899864     588999998877432  3589999944322        278999987    446778899999


Q ss_pred             hhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEE
Q 032139           77 KLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVV  143 (146)
Q Consensus        77 ~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~  143 (146)
                      +|+.+ + +.++|+++ .+++||... ..+|||||.|+|+  .||+|+|++||++|+|+||+|||+|+
T Consensus        78 ~l~~~-~-~~~i~~~~L~~~gli~~~-~~~vKiLg~Gel~--~ki~i~~~~~S~sA~~~IE~aGG~Ve  140 (140)
T d2gycj1          78 DLAKV-E-GGVVDLNTLKAANIIGIQ-IEFAKVILAGEVT--TPVTVRGLRVTKGARAAIEAAGGKIE  140 (140)
T ss_dssp             SSSSS-S-SCSCCSTTSCTTTTCCCS-SCCCBCCCSCCCC--CCCCCCCSCCCTTTSSSSSSSCCCCC
T ss_pred             eehhc-c-cccccHHHHhhcCeeecc-ceeeEEeccCccc--CCEEEEEEEeCHHHHHHHHHcCCccC
Confidence            99864 3 45788887 899999776 5689999999999  99999999999999999999999984

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.34  E-value=6.4e-13  Score=92.75  Aligned_cols=60  Identities=37%  Similarity=0.377  Sum_probs=49.5

Q ss_pred             eeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEE
Q 032139           68 FHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVV  143 (146)
Q Consensus        68 ~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~  143 (146)
                      ..+.+|||++|+++..++..        -+|      +.||||+|+++  ++++|.|..||++|+|+||+|||.++
T Consensus        38 r~r~~VnLski~~~~k~~~~--------vvv------pgKVLg~G~l~--~k~~V~A~~fS~sA~~kI~~aGg~it   97 (115)
T d1vqoo1          38 RTHAEVNLGRIERYAQEDET--------VVV------PGKVLGSGVLQ--KDVTVAAVDFSGTAETKIDQVGEAVS   97 (115)
T ss_dssp             GGSEEEEHHHHHHHCCTTSE--------EEE------EEEEECCSCCC--SCCEEEEEEECHHHHHHHHHHSEEEE
T ss_pred             ccCCCccHHHHHHhccCCCE--------EEE------eeEEecccEEc--CCEEEEEeecCHHHHHHHHHcCCEEE
Confidence            44579999999987665421        122      56999999999  99999999999999999999987654

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.39  E-value=5.1e-05  Score=53.48  Aligned_cols=68  Identities=16%  Similarity=0.121  Sum_probs=41.8

Q ss_pred             CcccccccccCccc------cCCCCCCCCCCCCC-cCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEec
Q 032139            3 TRFKKNRKKRGHVS------AGHGRIGKHRKHPG-GRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNI   75 (146)
Q Consensus         3 ~r~kk~rk~RG~~s------~G~G~~gq~r~~~G-grG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL   75 (146)
                      .+++|.|.+||++|      +|+|+.||..++.. -++|+|++     .|++..+    +++|+..   .+...+...||
T Consensus         2 skk~k~R~gRg~G~G~~~~~~GrG~KGqk~rsG~~~~~f~g~~-----~lpK~g~----~~~~~~~---~~~~~inl~~L   69 (150)
T d1vqol1           2 SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHE-----PLGKSGF----KRPQKVQ---EEAATIDVREI   69 (150)
T ss_dssp             CTGGGCTTCSSTTCSSTTSSSSGGGGTSSTTTTTTTTTCTTSC-----CSSCCCC----CCCGGGC---CCEEEEEHHHH
T ss_pred             CccccccCCcCcCCCCCCCCCCCCCCCCCCcccCccCCCcCCc-----cCCccCc----ccccccc---ceeeeccHHHH
Confidence            46788899998654      69999999766422 24788765     2444322    2333211   22456678888


Q ss_pred             hhhhhhc
Q 032139           76 DKLWSMV   82 (146)
Q Consensus        76 ~~L~~~~   82 (146)
                      +.+.+.+
T Consensus        70 ~~~~~~~   76 (150)
T d1vqol1          70 DENVTLL   76 (150)
T ss_dssp             HHTTTTC
T ss_pred             HHHHhhh
Confidence            7776543