Citrus Sinensis ID: 032182

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFTPEDIMQSVD
ccccccccccHHHHHHHHccccccccEEcccccccHHHHHHHccccEEEEEcccEEEEEcccccEEccEEEEEEEcEEEEEcEEEEEEEcccEEEEccccccEEEEEEEccHHHHHHHHHHHHccccccccccccccHHHHHcccc
ccccccccccHHHHHHHHHcccHHHcHHHHEEEEcHHHHHHHcccEEEcccccEEEEccccccccEEEEEEEEccccEEEEcccEEEcccccEEEccEcHHHEEEEEcccccHHHHHHHHHHHHHHHHHccccccccHHHHHcccc
mkynprvsssrrknrkahftapsSVRRILmsaplstdlrqkynvrsmpvrkddevQVVRGTykgregkvVQVYRRKWVIHIERITrekvngstvnvginpSKVVITKLRLDKDRKSLLDRKAKGraaadkekgtkftpedimqsvd
mkynprvsssrrknrkahftapssvrrilmsaplstdlrqkynvrsmpvrkddevqvvrgtykgregkvvqvyrrkwvihieritrekvngstvnvginpskvvitklrldkdrkslldrkakgraaadkekgtkftpedimqsvd
MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITklrldkdrkslldrkakgraaadkekgTKFTPEDIMQSVD
*****************************************************EVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRL************************************
*****************HFTAPSSVRRILMSAPL*TDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRK*******************************
********************APSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD***************KFTPEDIMQSVD
*******************TAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKAKGR*********************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFTPEDIMQSVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query146 2.2.26 [Sep-21-2011]
P51414146 60S ribosomal protein L26 yes no 1.0 1.0 0.904 1e-73
Q9FJX2146 60S ribosomal protein L26 no no 1.0 1.0 0.863 8e-71
Q39411146 60S ribosomal protein L26 N/A no 0.993 0.993 0.827 4e-66
P61255145 60S ribosomal protein L26 yes no 0.952 0.958 0.697 9e-50
P61256145 60S ribosomal protein L26 N/A no 0.952 0.958 0.697 9e-50
P61254145 60S ribosomal protein L26 yes no 0.952 0.958 0.697 9e-50
P61257145 60S ribosomal protein L26 yes no 0.952 0.958 0.697 9e-50
Q9UNX3145 60S ribosomal protein L26 yes no 0.952 0.958 0.704 1e-49
P12749145 60S ribosomal protein L26 yes no 0.952 0.958 0.697 2e-49
Q95WA0144 60S ribosomal protein L26 N/A no 0.979 0.993 0.668 9e-49
>sp|P51414|RL261_ARATH 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2 Back     alignment and function desciption
 Score =  274 bits (700), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/146 (90%), Positives = 142/146 (97%)

Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 60
           MKYNPRV+SSRRKNRKAHFTA SS RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRAAADKEKGTKFTPEDIMQSVD 146
           KAKGRAAADKEKGTKFT ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FJX2|RL262_ARATH 60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1 Back     alignment and function description
>sp|Q39411|RL26_BRARA 60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1 Back     alignment and function description
>sp|P61255|RL26_MOUSE 60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1 Back     alignment and function description
>sp|P61256|RL26_MACFA 60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1 Back     alignment and function description
>sp|P61254|RL26_HUMAN 60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1 Back     alignment and function description
>sp|P61257|RL26_BOVIN 60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1 Back     alignment and function description
>sp|Q9UNX3|RL26L_HUMAN 60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1 Back     alignment and function description
>sp|P12749|RL26_RAT 60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1 Back     alignment and function description
>sp|Q95WA0|RL26_LITLI 60S ribosomal protein L26 OS=Littorina littorea GN=RPL26 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
255568595146 60S ribosomal protein L26, putative [Ric 1.0 1.0 0.965 5e-75
224096251146 predicted protein [Populus trichocarpa] 1.0 1.0 0.952 2e-74
224074251146 predicted protein [Populus trichocarpa] 1.0 1.0 0.945 3e-74
15229631146 60S ribosomal protein L26-1 [Arabidopsis 1.0 1.0 0.904 9e-72
449460590146 PREDICTED: 60S ribosomal protein L26-1-l 1.0 1.0 0.910 2e-71
15240766146 60S ribosomal protein L26-2 [Arabidopsis 1.0 1.0 0.863 5e-69
297794223146 60S ribosomal protein L26 [Arabidopsis l 1.0 1.0 0.863 1e-68
194466205146 putative L24 ribosomal protein [Arachis 1.0 1.0 0.945 3e-68
225439002146 PREDICTED: 60S ribosomal protein L26-1 i 1.0 1.0 0.938 1e-67
224081222146 predicted protein [Populus trichocarpa] 1.0 1.0 0.952 2e-67
>gi|255568595|ref|XP_002525271.1| 60S ribosomal protein L26, putative [Ricinus communis] gi|223535429|gb|EEF37099.1| 60S ribosomal protein L26, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  285 bits (728), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 141/146 (96%), Positives = 144/146 (98%)

Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSA LSTDLRQKYNVRSMPVRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAALSTDLRQKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRAAADKEKGTKFTPEDIMQSVD 146
           KAKGRAAADK+KGTKFT EDIMQ+VD
Sbjct: 121 KAKGRAAADKDKGTKFTSEDIMQTVD 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224096251|ref|XP_002310593.1| predicted protein [Populus trichocarpa] gi|118483302|gb|ABK93553.1| unknown [Populus trichocarpa] gi|222853496|gb|EEE91043.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224074251|ref|XP_002304321.1| predicted protein [Populus trichocarpa] gi|118483998|gb|ABK93886.1| unknown [Populus trichocarpa] gi|222841753|gb|EEE79300.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15229631|ref|NP_190560.1| 60S ribosomal protein L26-1 [Arabidopsis thaliana] gi|297816242|ref|XP_002876004.1| 60S ribosomal protein L26 [Arabidopsis lyrata subsp. lyrata] gi|27735242|sp|P51414.2|RL261_ARATH RecName: Full=60S ribosomal protein L26-1 gi|13877791|gb|AAK43973.1|AF370158_1 putative 60S ribosomal protein [Arabidopsis thaliana] gi|6723436|emb|CAB66929.1| 60S RIBOSOMAL PROTEIN-like [Arabidopsis thaliana] gi|16323426|gb|AAL15207.1| putative 60S ribosomal protein [Arabidopsis thaliana] gi|23397084|gb|AAN31827.1| putative 60S ribosomal protein [Arabidopsis thaliana] gi|297321842|gb|EFH52263.1| 60S ribosomal protein L26 [Arabidopsis lyrata subsp. lyrata] gi|332645084|gb|AEE78605.1| 60S ribosomal protein L26-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449460590|ref|XP_004148028.1| PREDICTED: 60S ribosomal protein L26-1-like isoform 1 [Cucumis sativus] gi|449460592|ref|XP_004148029.1| PREDICTED: 60S ribosomal protein L26-1-like isoform 2 [Cucumis sativus] gi|449502744|ref|XP_004161730.1| PREDICTED: 60S ribosomal protein L26-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15240766|ref|NP_201552.1| 60S ribosomal protein L26-2 [Arabidopsis thaliana] gi|27734449|sp|Q9FJX2.1|RL262_ARATH RecName: Full=60S ribosomal protein L26-2 gi|9757872|dbj|BAB08459.1| 60S ribosomal protein L26 [Arabidopsis thaliana] gi|17473656|gb|AAL38285.1| 60S ribosomal protein L26 [Arabidopsis thaliana] gi|20148599|gb|AAM10190.1| 60S ribosomal protein L26 [Arabidopsis thaliana] gi|21554514|gb|AAM63595.1| 60S ribosomal protein L26 [Arabidopsis thaliana] gi|332010971|gb|AED98354.1| 60S ribosomal protein L26-2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297794223|ref|XP_002864996.1| 60S ribosomal protein L26 [Arabidopsis lyrata subsp. lyrata] gi|297310831|gb|EFH41255.1| 60S ribosomal protein L26 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|194466205|gb|ACF74333.1| putative L24 ribosomal protein [Arachis hypogaea] Back     alignment and taxonomy information
>gi|225439002|ref|XP_002284455.1| PREDICTED: 60S ribosomal protein L26-1 isoform 1 [Vitis vinifera] gi|359480547|ref|XP_003632488.1| PREDICTED: 60S ribosomal protein L26-1-like [Vitis vinifera] gi|359480553|ref|XP_003632490.1| PREDICTED: 60S ribosomal protein L26-1 isoform 2 [Vitis vinifera] gi|359480556|ref|XP_003632491.1| PREDICTED: 60S ribosomal protein L26-1 isoform 3 [Vitis vinifera] gi|147772865|emb|CAN75906.1| hypothetical protein VITISV_001974 [Vitis vinifera] gi|296087313|emb|CBI33687.3| unnamed protein product [Vitis vinifera] gi|296087319|emb|CBI33693.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224081222|ref|XP_002306341.1| predicted protein [Populus trichocarpa] gi|118481457|gb|ABK92671.1| unknown [Populus trichocarpa] gi|222855790|gb|EEE93337.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
TAIR|locus:2097415146 AT3G49910 [Arabidopsis thalian 1.0 1.0 0.726 1.2e-51
TAIR|locus:2158616146 AT5G67510 [Arabidopsis thalian 1.0 1.0 0.691 2.5e-49
UNIPROTKB|E5RIT6128 RPL26L1 "60S ribosomal protein 0.726 0.828 0.747 3.4e-38
UNIPROTKB|Q9UNX3145 RPL26L1 "60S ribosomal protein 0.726 0.731 0.747 3.4e-38
UNIPROTKB|F2Z5N5145 RPL26L1 "Uncharacterized prote 0.726 0.731 0.747 3.4e-38
UNIPROTKB|F1NNZ2166 RPL26L1 "Uncharacterized prote 0.726 0.638 0.738 4.3e-38
UNIPROTKB|F2Z4K6145 RPL26L1 "Uncharacterized prote 0.726 0.731 0.738 4.3e-38
UNIPROTKB|P61257145 RPL26 "60S ribosomal protein L 0.726 0.731 0.738 4.3e-38
UNIPROTKB|E2QUE7145 RPL26 "Uncharacterized protein 0.726 0.731 0.738 4.3e-38
UNIPROTKB|J3QRI7107 RPL26 "60S ribosomal protein L 0.726 0.990 0.738 4.3e-38
TAIR|locus:2097415 AT3G49910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 106/146 (72%), Positives = 115/146 (78%)

Query:     1 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 60
             MKYNPRV+SSRRKNRKAHFTA SS RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRG
Sbjct:     1 MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query:    61 TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXX 120
             TYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT              
Sbjct:    61 TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query:   121 XXXXXXXXXXXXXTKFTPEDIMQSVD 146
                          TKFT ED+MQ+VD
Sbjct:   121 KAKGRAAADKEKGTKFTSEDVMQNVD 146
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0015934 "large ribosomal subunit" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=IDA
GO:0009409 "response to cold" evidence=IEP
GO:0009507 "chloroplast" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
TAIR|locus:2158616 AT5G67510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E5RIT6 RPL26L1 "60S ribosomal protein L26-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UNX3 RPL26L1 "60S ribosomal protein L26-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5N5 RPL26L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NNZ2 RPL26L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4K6 RPL26L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P61257 RPL26 "60S ribosomal protein L26" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUE7 RPL26 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J3QRI7 RPL26 "60S ribosomal protein L26" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B1L777RL24_KORCONo assigned EC number0.50450.75340.8396yesno
Q9UNX3RL26L_HUMANNo assigned EC number0.70420.95200.9586yesno
P47832RL26_CHICKNo assigned EC number0.7040.83560.9531nono
Q54QM8RL26_DICDINo assigned EC number0.64390.89720.9424yesno
Q975J1RL24_SULTONo assigned EC number0.41080.86300.9197yesno
P61256RL26_MACFANo assigned EC number0.69710.95200.9586N/Ano
P61257RL26_BOVINNo assigned EC number0.69710.95200.9586yesno
P61254RL26_HUMANNo assigned EC number0.69710.95200.9586yesno
P61255RL26_MOUSENo assigned EC number0.69710.95200.9586yesno
Q23F79RL26_TETTSNo assigned EC number0.59850.91090.9851N/Ano
P51414RL261_ARATHNo assigned EC number0.90411.01.0yesno
A3MWZ8RL24_PYRCJNo assigned EC number0.40160.82870.9453yesno
Q2I0I6RL26_AILMENo assigned EC number0.70140.90410.9103yesno
O05633RL24_SULACNo assigned EC number0.38230.89720.9776yesno
A3DNB8RL24_STAMFNo assigned EC number0.41540.94520.9078yesno
A8MB21RL24_CALMQNo assigned EC number0.41320.82190.8391yesno
P05743RL26A_YEASTNo assigned EC number0.59480.79450.9133yesno
Q19869RL26_CAEELNo assigned EC number0.61900.86300.8873yesno
P53221RL26B_YEASTNo assigned EC number0.59480.79450.9133yesno
P78946RL26_SCHPONo assigned EC number0.64750.83560.9682yesno
O59429RL24_PYRHONo assigned EC number0.47960.81500.9834yesno
Q9FJX2RL262_ARATHNo assigned EC number0.86301.01.0nono
Q39411RL26_BRARANo assigned EC number0.82750.99310.9931N/Ano
P12749RL26_RATNo assigned EC number0.69710.95200.9586yesno
Q95WA0RL26_LITLINo assigned EC number0.66890.97940.9930N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VII0552
SubName- Full=Putative uncharacterized protein; (146 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.1845.1.1
60S ribosomal protein L4/L1 (RPL4D) (408 aa)
• ••••  0.773
estExt_Genewise1_v1.C_280409
SubName- Full=Putative uncharacterized protein; (408 aa)
• ••••  0.772
estExt_Genewise1_v1.C_LG_XVI2622
60S ribosomal protein L4/L1 (RPL4D) (407 aa)
• ••••  0.755
gw1.XVI.3868.1
SubName- Full=Putative uncharacterized protein; (262 aa)
• ••    0.747
eugene3.01500073
SubName- Full=Putative uncharacterized protein; (389 aa)
• ••••  0.746
estExt_fgenesh4_pm.C_LG_V0429
SubName- Full=Putative uncharacterized protein; (389 aa)
• ••••  0.743
eugene3.00150590
40S ribosomal protein S4 (RPS4A) (263 aa)
• ••    0.743
estExt_fgenesh4_pm.C_1220043
40S ribosomal protein S4 (RPS4A) (263 aa)
• ••    0.742
estExt_fgenesh4_pm.C_LG_VI0361
40S ribosomal protein S4 (RPS4A) (263 aa)
• ••    0.741
estExt_fgenesh4_pm.C_LG_II0304
SubName- Full=Putative uncharacterized protein; (389 aa)
• ••••  0.741

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
PTZ00194143 PTZ00194, PTZ00194, 60S ribosomal protein L26; Pro 8e-64
TIGR01080114 TIGR01080, rplX_A_E, ribosomal protein L24p/L26e, 5e-48
PRK01191120 PRK01191, rpl24p, 50S ribosomal protein L24P; Vali 2e-34
cd0608965 cd06089, KOW_RPL26, KOW motif of Ribosomal Protein 9e-14
COG0198104 COG0198, RplX, Ribosomal protein L24 [Translation, 5e-09
pfam0046732 pfam00467, KOW, KOW motif 5e-06
PRK00004105 PRK00004, rplX, 50S ribosomal protein L24; Reviewe 5e-04
smart0073928 smart00739, KOW, KOW (Kyprides, Ouzounis, Woese) m 0.001
>gnl|CDD|185508 PTZ00194, PTZ00194, 60S ribosomal protein L26; Provisional Back     alignment and domain information 
 Score =  191 bits (487), Expect = 8e-64
 Identities = 97/144 (67%), Positives = 115/144 (79%), Gaps = 1/144 (0%)

Query: 3   YNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTY 62
           +N  VSSSRRK RKAHFTAPS +RR LMSAPLS +LR KYNVRSMPVRKDDEV VVRG +
Sbjct: 1   FNSIVSSSRRKARKAHFTAPSHLRRKLMSAPLSKELRAKYNVRSMPVRKDDEVMVVRGHH 60

Query: 63  KGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKA 122
           KGREGKV  VYR+KWVIHIE+ITREK NG  V +GI+PS V+ITKL+L+KDRK++L+RKA
Sbjct: 61  KGREGKVTAVYRKKWVIHIEKITREKANGEPVQIGIHPSNVIITKLKLNKDRKAILERKA 120

Query: 123 KGRAAADKEKGTKFTPEDIMQSVD 146
           +    +DK KG     +  MQ +D
Sbjct: 121 R-STKSDKGKGKYTAADKAMQQMD 143

Length = 143
>gnl|CDD|130152 TIGR01080, rplX_A_E, ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>gnl|CDD|234915 PRK01191, rpl24p, 50S ribosomal protein L24P; Validated Back     alignment and domain information
>gnl|CDD|240513 cd06089, KOW_RPL26, KOW motif of Ribosomal Protein L26 Back     alignment and domain information
>gnl|CDD|223276 COG0198, RplX, Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|144165 pfam00467, KOW, KOW motif Back     alignment and domain information
>gnl|CDD|234566 PRK00004, rplX, 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>gnl|CDD|128978 smart00739, KOW, KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 146
PTZ00194143 60S ribosomal protein L26; Provisional 100.0
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 100.0
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 100.0
KOG3401145 consensus 60S ribosomal protein L26 [Translation, 100.0
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 99.9
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 99.89
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 99.89
CHL0014183 rpl24 ribosomal protein L24; Validated 99.87
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 99.83
KOG1708236 consensus Mitochondrial/chloroplast ribosomal prot 99.68
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 98.78
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 97.8
PRK08559153 nusG transcription antitermination protein NusG; V 97.68
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 97.67
PRK05609181 nusG transcription antitermination protein NusG; V 97.23
COG0250178 NusG Transcription antiterminator [Transcription] 97.22
TIGR00922172 nusG transcription termination/antitermination fac 97.14
TIGR01956258 NusG_myco NusG family protein. This model represen 96.56
TIGR01955159 RfaH transcriptional activator RfaH. This model re 96.55
PRK09014162 rfaH transcriptional activator RfaH; Provisional 96.33
PRK0433384 50S ribosomal protein L14e; Validated 92.81
KOG1999 1024 consensus RNA polymerase II transcription elongati 92.41
PTZ00471134 60S ribosomal protein L27; Provisional 89.59
COG2163125 RPL14A Ribosomal protein L14E/L6E/L27E [Translatio 85.83
COG5164 607 SPT5 Transcription elongation factor [Transcriptio 85.73
PTZ00065130 60S ribosomal protein L14; Provisional 85.35
PRK0430698 50S ribosomal protein L21e; Reviewed 81.97
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.7e-51  Score=314.70  Aligned_cols=138  Identities=70%  Similarity=1.054  Sum_probs=130.4

Q ss_pred             CCCCCCCCcccccccccCCCCcccceeeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEe
Q 032182            3 YNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIE   82 (146)
Q Consensus         3 ~~~~~s~~~rKqRk~~~~Ap~h~r~k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VE   82 (146)
                      +||++|+|||||||++|+||.|+|+++|+|+||+|||++||+|+|+|++||+|+||+|+|||++|+|++|++++++|+||
T Consensus         1 ~n~~~S~~prKqRKa~~~Ap~h~r~k~msa~LSkeLr~k~~~Rs~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~ViVE   80 (143)
T PTZ00194          1 FNSIVSSSRRKARKAHFTAPSHLRRKLMSAPLSKELRAKYNVRSMPVRKDDEVMVVRGHHKGREGKVTAVYRKKWVIHIE   80 (143)
T ss_pred             CCccccCCchHHHHHhhcCcHHHHHHHhcCccCHHHHHHhCCccceeecCCEEEEecCCCCCCceEEEEEEcCCCEEEEe
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEeeCCcEEEeeccccceEEEcCCCcchhhhhhccccccchhhhhccCCccchhccc
Q 032182           83 RITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFTPEDIM  142 (146)
Q Consensus        83 gin~~K~~G~~~e~pIh~SNv~i~~~~~~~~R~~~le~~~k~~~~~~~~~~~~~~~~~~~  142 (146)
                      |||+.+.+|..+|+|||||||+|+|++++.+|.++||+++..+++. ..+| ++++|+..
T Consensus        81 gvn~~Kk~gk~~e~PIh~SNV~iv~l~l~~~R~~~l~~k~~~~~~~-~~~g-~~~~~~~~  138 (143)
T PTZ00194         81 KITREKANGEPVQIGIHPSNVIITKLKLNKDRKAILERKARSTKSD-KGKG-KYTAADKA  138 (143)
T ss_pred             CeEEEecCCCEeecCcCchheEEEccccCchHHHHHhhhhhhhhhh-hhcC-ccchhHhh
Confidence            9999999999999999999999999999766999999999988865 4458 88877653

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>KOG3401 consensus 60S ribosomal protein L26 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>PRK04333 50S ribosomal protein L14e; Validated Back     alignment and domain information
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information
>PTZ00471 60S ribosomal protein L27; Provisional Back     alignment and domain information
>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5164 SPT5 Transcription elongation factor [Transcription] Back     alignment and domain information
>PTZ00065 60S ribosomal protein L14; Provisional Back     alignment and domain information
>PRK04306 50S ribosomal protein L21e; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
3izr_Y150 Localization Of The Large Subunit Ribosomal Protein 3e-50
2zkr_t145 Structure Of A Mammalian Ribosomal 60s Subunit With 3e-41
4a17_S135 T.Thermophila 60s Ribosomal Subunit In Complex With 1e-34
3zf7_Z143 High-resolution Cryo-electron Microscopy Structure 2e-34
2ww9_L127 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 5e-32
1s1i_U126 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 6e-32
3izs_Y123 Localization Of The Large Subunit Ribosomal Protein 6e-32
3jyw_U116 Structure Of The 60s Proteins For Eukaryotic Riboso 2e-31
3j21_U121 Promiscuous Behavior Of Proteins In Archaeal Riboso 9e-21
1s72_T120 Refined Crystal Structure Of The Haloarcula Marismo 2e-12
1ffk_Q119 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-12
>pdb|3IZR|Y Chain Y, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 150 Back     alignment and structure 
Iteration: 1

 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/106 (86%), Positives = 102/106 (96%)
Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 60
           MK NPRV+SSRRK RKAHFTAPSSVRR+LMSA LST+LR KYNVRS+P+RKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 106
           +YKGREGKVVQVYRR+WVIH+ERITREKVNGSTVNVGI+PSKVV+T
Sbjct: 61  SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVT 106
>pdb|2ZKR|TT Chain t, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 145 Back     alignment and structure
>pdb|4A17|S Chain S, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 135 Back     alignment and structure
>pdb|3ZF7|Z Chain Z, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 143 Back     alignment and structure
>pdb|2WW9|L Chain L, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 127 Back     alignment and structure
>pdb|1S1I|U Chain U, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 126 Back     alignment and structure
>pdb|3IZS|Y Chain Y, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 123 Back     alignment and structure
>pdb|3JYW|U Chain U, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 116 Back     alignment and structure
>pdb|3J21|U Chain U, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 121 Back     alignment and structure
>pdb|1S72|T Chain T, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 120 Back     alignment and structure
>pdb|1FFK|Q Chain Q, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 119 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 2e-48
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 1e-46
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 1e-45
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 9e-45
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 3e-43
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 2e-04
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 3e-04
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 145 Back     alignment and structure
 Score =  151 bits (383), Expect = 2e-48
 Identities = 99/147 (67%), Positives = 122/147 (82%), Gaps = 3/147 (2%)

Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 60
           MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD 119
            YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 120 RKAKGRAAADKEKGTKFTPEDIMQSVD 146
           RKAK R    KEKG K+  E I +  +
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETIEKMQE 145
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Length = 135 Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Length = 127 Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Length = 120 Back     alignment and structure
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Length = 110 Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Length = 115 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 100.0
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 100.0
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 100.0
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 100.0
3j21_U121 50S ribosomal protein L24P; archaea, archaeal, KIN 100.0
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 100.0
3bbo_W191 Ribosomal protein L24; large ribosomal subunit, sp 99.95
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 99.93
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 99.93
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 99.91
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 99.9
1nz9_A58 Transcription antitermination protein NUSG; transc 98.63
3p8b_B152 Transcription antitermination protein NUSG; transc 98.11
2e6z_A59 Transcription elongation factor SPT5; KOW motif, s 97.54
2jvv_A181 Transcription antitermination protein NUSG; transc 97.38
2do3_A69 Transcription elongation factor SPT5; KOW motif, s 97.16
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 96.87
2xhc_A352 Transcription antitermination protein NUSG; 2.45A 96.46
1m1h_A248 Transcription antitermination protein NUSG; transc 96.02
2e70_A71 Transcription elongation factor SPT5; KOW motif, s 94.21
4a18_F126 RPL14; ribosome, eukaryotic initiation factor 6, E 92.93
3iz5_N134 60S ribosomal protein L14 (L14E); eukaryotic ribos 92.64
4a18_N144 RPL27, ribosomal protein L22; ribosome, eukaryotic 92.29
2joy_A96 50S ribosomal protein L14E; protein solution struc 90.66
3izc_N138 60S ribosomal protein RPL14 (L14E); eukaryotic rib 89.69
3j21_583 50S ribosomal protein L14E; archaea, archaeal, KIN 87.58
2xzm_W260 40S ribosomal protein S4; ribosome, translation; 3 86.62
2oug_A162 Transcriptional activator RFAH; transcription fact 85.03
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Back     alignment and structure
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Back     alignment and structure
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Back     alignment and structure
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Back     alignment and structure
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ... Back     alignment and structure
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Back     alignment and structure
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4 Back     alignment and structure
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D Back     alignment and structure
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G Back     alignment and structure
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Back     alignment and structure
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Back     alignment and structure
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima} Back     alignment and structure
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A Back     alignment and structure
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7 Back     alignment and structure
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N Back     alignment and structure
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A Back     alignment and structure
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W Back     alignment and structure
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 146
d1vqot1119 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) { 3e-40
d2j01y1101 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) { 6e-05
d2zjrr1110 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) { 1e-04
d2gycs199 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) { 0.001
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 119 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  129 bits (325), Expect = 3e-40
 Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 8   SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREG 67
           S    K RK+   AP   R   + A LS DLR++Y  R++ V   D V+V+RG + G EG
Sbjct: 1   SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEG 60

Query: 68  KVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDK-DRKSLLDRKAK 123
           +V+ V   K VIH+E +T EK +G  V   ++ S V +T L L+   R++ L+ +  
Sbjct: 61  EVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDD 117
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Length = 101 Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Length = 110 Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Length = 99 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 100.0
d2j01y1101 Ribosomal proteins L24 (L24p) {Thermus thermophilu 99.9
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 99.9
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 99.87
d1nppa258 N-utilization substance G protein NusG, C-terminal 98.07
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 98.04
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 97.23
d2joya196 Ribosomal protein L14e {Sulfolobus solfataricus [T 88.05
d1vhka172 Hypothetical protein YqeU {Bacillus subtilis [TaxI 84.09
d1nxza172 Hypothetical protein HI0303 {Haemophilus influenza 81.27
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.1e-47  Score=286.16  Aligned_cols=116  Identities=38%  Similarity=0.567  Sum_probs=113.1

Q ss_pred             CCCcccccccccCCCCcccceeeeccCCHHHHhhhCCcccceecCCEEEEeecCCCCeEeeEEEEEecCCEEEEeeeeEE
Q 032182            8 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITRE   87 (146)
Q Consensus         8 s~~~rKqRk~~~~Ap~h~r~k~msa~Ls~eLr~ky~~rs~~IkkGD~V~Vi~G~~KGk~GkV~~V~~k~~~V~VEgin~~   87 (146)
                      |+||||||+++||||.|.|+++|+|+||+|||++||+|+|+|++||+|+||+|+|||++|+|++|++++++|+|||||+.
T Consensus         1 S~~prKqRk~~~~ap~h~r~k~m~a~LskeLr~k~~~r~~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~V~Vegin~~   80 (119)
T d1vqot1           1 SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLE   80 (119)
T ss_dssp             CCCHHHHHHHHHTCCGGGGGGGGEEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEE
T ss_pred             CCCcchhHHhhccCCcchhhheeeCccChhhHHHhCCcccceeCCCEEEEeecCCCCCcceEEEEECCCCEEEEeCcEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCcEEEeeccccceEEEcCCC-cchhhhhhccccc
Q 032182           88 KVNGSTVNVGINPSKVVITKLRL-DKDRKSLLDRKAK  123 (146)
Q Consensus        88 K~~G~~~e~pIh~SNv~i~~~~~-~~~R~~~le~~~k  123 (146)
                      +.+|+++|+|||+|||+|+|+++ +++|..+||++.+
T Consensus        81 k~~~k~~~~pIh~SNv~i~~~~~~~~~R~~~le~kd~  117 (119)
T d1vqot1          81 KTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDD  117 (119)
T ss_dssp             CTTSCEEECCBCGGGEEEEECCCCSHHHHHHHHCSSS
T ss_pred             ecCCceeeccCchHHEEEEeCcCCcchhhhhhhcccc
Confidence            99999999999999999999999 6999999988754
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure