Citrus Sinensis ID: 032208

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQMLI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHccccccccHccccccccccccccccccccHEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHcHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mapkrggkvaaapakkkpekvvnplfekrpkqfgiggalppkkdlhryvkwpkAIRIQRQRRILRQRlkvppalnqFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAegktveakkpiVVKYGLNHVTYLIEQMLI
Flexible Loop (DISEMBL)
mapkrggkvaaapakkkpekvvnplfekrpkqfgiggalppkkdlhryvkWPKAIRIQRQRRILrqrlkvppalnqftktlDKNLASSLFKLLLKYRPEDRAAKKERLLKRaqaeaegktveakkpivvkygLNHVTYLIEQMLI
Low Complexity Region (SEG)
MapkrggkvaaapakkkpekvvNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAiriqrqrrilrqrlKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQMLI
Disordered region (IsUnstruct)
********************************FGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYR**************************KKPIVVKYGLNHVTYLIEQ***
Disordered Region (DISOPRED)
**************************EKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRR*****LKVPPALNQFTKTLDKNLASSLFKLLL********************************IVVKYGLNHVTYLIEQMLI
Disordered Region (DISEMBL)
******************EKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKR*********VEAKKPIVVKYGLNHVTYLIEQMLI
Disordered Region (DISPRO)
*********************VNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQMLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRxxxxxxxxxxxxxxxxxxxxxAKKPIVVKYGLNHVTYLIEQMLI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
P35685	258	60S ribosomal protein L7a	yes	no	0.972	0.546	0.894	1e-68
Q9LZH9	256	60S ribosomal protein L7a	yes	no	0.958	0.542	0.845	2e-64
P49692	257	60S ribosomal protein L7a	yes	no	0.855	0.482	0.870	3e-59
P0DJ14	255	60S ribosomal protein L7a	N/A	no	0.820	0.466	0.613	1e-38
O13672	259	60S ribosomal protein L8	yes	no	0.965	0.540	0.593	4e-37
Q2TBQ5	266	60S ribosomal protein L7a	yes	no	0.882	0.481	0.589	1e-35
P12970	266	60S ribosomal protein L7a	yes	no	0.882	0.481	0.589	1e-35
P62425	266	60S ribosomal protein L7a	yes	no	0.882	0.481	0.589	1e-35
Q4R5C2	266	60S ribosomal protein L7a	N/A	no	0.882	0.481	0.589	1e-35
P62424	266	60S ribosomal protein L7a	yes	no	0.882	0.481	0.589	1e-35

>sp|P35685|RL7A_ORYSJ 60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1

 Score =  258 bits (658), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/142 (89%), Positives = 136/142 (95%), Gaps = 1/142 (0%)

Query: 1   MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQ 60
           MAPKRGG+ A  PAKKK EKV NPLFEKRPKQFGIGGALPPKKDLHR+VKWPK +RIQRQ
Sbjct: 1   MAPKRGGR-APVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQ 59

Query: 61  RRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT 120
           RRIL+QRLKVPPALNQFT+TLDKNLA++LFK+LLKYRPED+AAKKERLLKRAQAEAEGKT
Sbjct: 60  RRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKT 119

Query: 121 VEAKKPIVVKYGLNHVTYLIEQ 142
           VEAKKPIVVKYGLNHVTYLIEQ
Sbjct: 120 VEAKKPIVVKYGLNHVTYLIEQ 141

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LZH9|RL7A2_ARATH 60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=1 SV=1

 Score =  243 bits (621), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/142 (84%), Positives = 133/142 (93%), Gaps = 3/142 (2%)

Query: 1   MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQ 60
           MAPK+G KVA+   KKKPEKV NPLFE+RPKQFGIGGALPPKKDL RY+KWPK+IR+QRQ
Sbjct: 1   MAPKKGVKVAS---KKKPEKVTNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQ 57

Query: 61  RRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT 120
           +RIL+QRLKVPPALNQFTKTLDKNLA+SLFK+LLKYRPED+AAKKERLL +AQAEAEGK 
Sbjct: 58  KRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKP 117

Query: 121 VEAKKPIVVKYGLNHVTYLIEQ 142
            E+KKPIVVKYGLNHVTYLIEQ
Sbjct: 118 AESKKPIVVKYGLNHVTYLIEQ 139

Arabidopsis thaliana (taxid: 3702)

>sp|P49692|RL7A1_ARATH 60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=1 SV=2

 Score =  226 bits (577), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/124 (87%), Positives = 120/124 (96%)

Query: 19  EKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFT 78
           EKV NPLFE+RPKQFGIGGALPPKKDL RY+KWPK+IR+QRQ+RIL+QRLKVPPALNQFT
Sbjct: 17  EKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFT 76

Query: 79  KTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTY 138
           KTLDKNLA+SLFK+LLKYRPED+AAKKERL+K+AQAEAEGK  E+KKPIVVKYGLNHVTY
Sbjct: 77  KTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTY 136

Query: 139 LIEQ 142
           LIEQ
Sbjct: 137 LIEQ 140

Arabidopsis thaliana (taxid: 3702)

>sp|P0DJ14|RL7A_TETTH 60S ribosomal protein L7a OS=Tetrahymena thermophila GN=RPL7A PE=1 SV=1

 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/119 (61%), Positives = 97/119 (81%)

Query: 23  NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTLD 82
           NPLF+ +P+ F +GG + PK+DL R+V+WP+ I +QRQ+R+L QRLKVPP ++QFTKTLD
Sbjct: 19  NPLFQAKPRSFRVGGDIQPKRDLTRFVRWPRYITLQRQKRVLLQRLKVPPQIHQFTKTLD 78

Query: 83  KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 141
           KN +S+LFKLL  Y PE  A KK+RL+ +A+A+ +GK VE KKPIV+KYGLNH+T LIE
Sbjct: 79  KNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIE 137

Tetrahymena thermophila (taxid: 5911)

>sp|O13672|RL8_SCHPO 60S ribosomal protein L8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl8 PE=1 SV=3

 Score =  152 bits (385), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/145 (59%), Positives = 105/145 (72%), Gaps = 5/145 (3%)

Query: 1   MAPKRGGKVAAAP-AKKKPEKVV-NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQ 58
           MAPK   KVA +P A+ K  K   NPLF  RP+ FGIG  + PK+DL R+VKWP+ IR+Q
Sbjct: 1   MAPK-SKKVAPSPFAQPKAAKTTKNPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQ 59

Query: 59  RQRRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEG 118
           R+R+IL  RLKVPPA+ QF KTLDKN A+ +FKLL KYRPE  A KK+RL+  A+A A G
Sbjct: 60  RRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANG 119

Query: 119 KTVE--AKKPIVVKYGLNHVTYLIE 141
           K+ +  +KKP  VKYGLNHV  LIE
Sbjct: 120 KSAQDVSKKPYNVKYGLNHVVALIE 144

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2TBQ5|RL7A_BOVIN 60S ribosomal protein L7a OS=Bos taurus GN=RPL7A PE=2 SV=3

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 98/129 (75%), Gaps = 1/129 (0%)

Query: 15  KKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPAL 74
           K++ +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+ IR+QRQR IL +RLKVPPA+
Sbjct: 21  KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAI 80

Query: 75  NQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGL 133
           NQFT+ LD+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+
Sbjct: 81  NQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV 140

Query: 134 NHVTYLIEQ 142
           N VT L+E 
Sbjct: 141 NTVTTLVEN 149

Bos taurus (taxid: 9913)

>sp|P12970|RL7A_MOUSE 60S ribosomal protein L7a OS=Mus musculus GN=Rpl7a PE=2 SV=2

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 98/129 (75%), Gaps = 1/129 (0%)

Query: 15  KKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPAL 74
           K++ +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+ IR+QRQR IL +RLKVPPA+
Sbjct: 21  KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAI 80

Query: 75  NQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGL 133
           NQFT+ LD+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+
Sbjct: 81  NQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV 140

Query: 134 NHVTYLIEQ 142
           N VT L+E 
Sbjct: 141 NTVTTLVEN 149

Mus musculus (taxid: 10090)

>sp|P62425|RL7A_RAT 60S ribosomal protein L7a OS=Rattus norvegicus GN=Rpl7a PE=1 SV=2

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 98/129 (75%), Gaps = 1/129 (0%)

Query: 15  KKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPAL 74
           K++ +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+ IR+QRQR IL +RLKVPPA+
Sbjct: 21  KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAI 80

Query: 75  NQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGL 133
           NQFT+ LD+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+
Sbjct: 81  NQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV 140

Query: 134 NHVTYLIEQ 142
           N VT L+E 
Sbjct: 141 NTVTTLVEN 149

Rattus norvegicus (taxid: 10116)

>sp|Q4R5C2|RL7A_MACFA 60S ribosomal protein L7a OS=Macaca fascicularis GN=RPL7A PE=2 SV=1

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 98/129 (75%), Gaps = 1/129 (0%)

Query: 15  KKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPAL 74
           K++ +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+ IR+QRQR IL +RLKVPPA+
Sbjct: 21  KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAI 80

Query: 75  NQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGL 133
           NQFT+ LD+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+
Sbjct: 81  NQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV 140

Query: 134 NHVTYLIEQ 142
           N VT L+E 
Sbjct: 141 NTVTTLVEN 149

Macaca fascicularis (taxid: 9541)

>sp|P62424|RL7A_HUMAN 60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 98/129 (75%), Gaps = 1/129 (0%)

Query: 15  KKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPAL 74
           K++ +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+ IR+QRQR IL +RLKVPPA+
Sbjct: 21  KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAI 80

Query: 75  NQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGL 133
           NQFT+ LD+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+
Sbjct: 81  NQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV 140

Query: 134 NHVTYLIEQ 142
           N VT L+E 
Sbjct: 141 NTVTTLVEN 149

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
255569920	570	60S ribosomal protein L7a, putative [Ric	0.972	0.247	0.914	2e-69
115475908	258	Os08g0326400 [Oryza sativa Japonica Grou	0.972	0.546	0.894	7e-67
242049786	258	hypothetical protein SORBIDRAFT_02g02938	0.972	0.546	0.887	2e-66
297734458	300	unnamed protein product [Vitis vinifera]	0.972	0.47	0.873	8e-66
357159281	258	PREDICTED: 60S ribosomal protein L7a-lik	0.972	0.546	0.880	1e-65
225456392	258	PREDICTED: 60S ribosomal protein L7a-lik	0.972	0.546	0.873	1e-65
226497590	258	LOC100282418 [Zea mays] gi|195622244|gb|	0.972	0.546	0.873	2e-65
226502084	258	60S ribosomal protein L7a [Zea mays] gi|	0.972	0.546	0.873	2e-65
298204448	337	unnamed protein product [Vitis vinifera]	0.972	0.418	0.873	5e-65
225451833	258	PREDICTED: 60S ribosomal protein L7a [Vi	0.972	0.546	0.873	5e-65

>gi|255569920|ref|XP_002525923.1| 60S ribosomal protein L7a, putative [Ricinus communis] gi|223534752|gb|EEF36443.1| 60S ribosomal protein L7a, putative [Ricinus communis]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 138/141 (97%)

Query: 2   APKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQR 61
           APKRG KV+AAPAKKKPEKV NPLFEKRPKQFGIGGALPPKKDLHR+VKWPK ++IQR+R
Sbjct: 313 APKRGVKVSAAPAKKKPEKVQNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVQIQRKR 372

Query: 62  RILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTV 121
           RILRQRLKVPPALNQFTKTLDKNLA+SLFKLLLKYRPEDRAAK+ERL++RAQAEAEGKTV
Sbjct: 373 RILRQRLKVPPALNQFTKTLDKNLATSLFKLLLKYRPEDRAAKRERLVQRAQAEAEGKTV 432

Query: 122 EAKKPIVVKYGLNHVTYLIEQ 142
           EAKKPIVVKYGLNHVTYLIEQ
Sbjct: 433 EAKKPIVVKYGLNHVTYLIEQ 453

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115475908|ref|NP_001061550.1| Os08g0326400 [Oryza sativa Japonica Group] gi|115480049|ref|NP_001063618.1| Os09g0507800 [Oryza sativa Japonica Group] gi|548774|sp|P35685.1|RL7A_ORYSJ RecName: Full=60S ribosomal protein L7a gi|315113253|pdb|3IZR|H Chain H, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gi|303855|dbj|BAA02156.1| ribosomal protein L7A [Oryza sativa Japonica Group] gi|38423963|dbj|BAD01672.1| 60S ribosomal protein L7A [Oryza sativa Japonica Group] gi|38637005|dbj|BAD03264.1| 60S ribosomal protein L7A [Oryza sativa Japonica Group] gi|113623519|dbj|BAF23464.1| Os08g0326400 [Oryza sativa Japonica Group] gi|113631851|dbj|BAF25532.1| Os09g0507800 [Oryza sativa Japonica Group] gi|125564310|gb|EAZ09690.1| hypothetical protein OsI_31973 [Oryza sativa Indica Group] gi|125606274|gb|EAZ45310.1| hypothetical protein OsJ_29953 [Oryza sativa Japonica Group] gi|215692651|dbj|BAG88071.1| unnamed protein product [Oryza sativa Japonica Group] gi|215692800|dbj|BAG88244.1| unnamed protein product [Oryza sativa Japonica Group] gi|215768136|dbj|BAH00365.1| unnamed protein product [Oryza sativa Japonica Group] gi|218200951|gb|EEC83378.1| hypothetical protein OsI_28791 [Oryza sativa Indica Group]

 Score =  258 bits (658), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 127/142 (89%), Positives = 136/142 (95%), Gaps = 1/142 (0%)

Query: 1   MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQ 60
           MAPKRGG+ A  PAKKK EKV NPLFEKRPKQFGIGGALPPKKDLHR+VKWPK +RIQRQ
Sbjct: 1   MAPKRGGR-APVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQ 59

Query: 61  RRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT 120
           RRIL+QRLKVPPALNQFT+TLDKNLA++LFK+LLKYRPED+AAKKERLLKRAQAEAEGKT
Sbjct: 60  RRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKT 119

Query: 121 VEAKKPIVVKYGLNHVTYLIEQ 142
           VEAKKPIVVKYGLNHVTYLIEQ
Sbjct: 120 VEAKKPIVVKYGLNHVTYLIEQ 141

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242049786|ref|XP_002462637.1| hypothetical protein SORBIDRAFT_02g029380 [Sorghum bicolor] gi|242049790|ref|XP_002462639.1| hypothetical protein SORBIDRAFT_02g029400 [Sorghum bicolor] gi|241926014|gb|EER99158.1| hypothetical protein SORBIDRAFT_02g029380 [Sorghum bicolor] gi|241926016|gb|EER99160.1| hypothetical protein SORBIDRAFT_02g029400 [Sorghum bicolor]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 136/142 (95%), Gaps = 1/142 (0%)

Query: 1   MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQ 60
           MAPKRGG+ A  PAKKK +KVVNPLFEKRPKQFGIGGALPPKKDLHR+VKWPK +RIQRQ
Sbjct: 1   MAPKRGGR-APVPAKKKTDKVVNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQ 59

Query: 61  RRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT 120
           RRIL+QRLKVPPALNQFT+TLDKNLA++LFK+LLKYRPED+AAKKERLLKRAQAE EGKT
Sbjct: 60  RRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAETEGKT 119

Query: 121 VEAKKPIVVKYGLNHVTYLIEQ 142
           VEAKKPIVVKYGLNHVTYLIEQ
Sbjct: 120 VEAKKPIVVKYGLNHVTYLIEQ 141

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734458|emb|CBI15705.3| unnamed protein product [Vitis vinifera]

 Score =  254 bits (649), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 124/142 (87%), Positives = 135/142 (95%), Gaps = 1/142 (0%)

Query: 1   MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQ 60
           MAPK+GGKV A   KKKPEKVVNPLFEKRPKQFGIGGALPPK+DLHR+VKWP  +RIQR+
Sbjct: 43  MAPKKGGKVLAQ-TKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLHRFVKWPHVVRIQRK 101

Query: 61  RRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT 120
           RRIL+QRLKVPPALNQFTKTLDKNLA+SLFK+LLKYRPED+AAKKERLLKRAQ+EAEGKT
Sbjct: 102 RRILKQRLKVPPALNQFTKTLDKNLATSLFKMLLKYRPEDKAAKKERLLKRAQSEAEGKT 161

Query: 121 VEAKKPIVVKYGLNHVTYLIEQ 142
           +E KKPIVVKYGLNHVTYLIEQ
Sbjct: 162 IEVKKPIVVKYGLNHVTYLIEQ 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357159281|ref|XP_003578397.1| PREDICTED: 60S ribosomal protein L7a-like [Brachypodium distachyon] gi|357166491|ref|XP_003580728.1| PREDICTED: 60S ribosomal protein L7a-like [Brachypodium distachyon]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 135/142 (95%), Gaps = 1/142 (0%)

Query: 1   MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQ 60
           MAPKRGG+ A  PAKKK EKV NPLFEKRPKQFGIGGALPPKKDLHR+VKWPK +RIQRQ
Sbjct: 1   MAPKRGGR-APVPAKKKAEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQ 59

Query: 61  RRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT 120
           RRIL+QRLKVPPAL+QFT+TLDKNLA++LFK+LLKYRPED+AAKKERLLKRAQAE EGKT
Sbjct: 60  RRILKQRLKVPPALHQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAETEGKT 119

Query: 121 VEAKKPIVVKYGLNHVTYLIEQ 142
           VEAKKPIVVKYGLNHVTYLIEQ
Sbjct: 120 VEAKKPIVVKYGLNHVTYLIEQ 141

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456392|ref|XP_002284139.1| PREDICTED: 60S ribosomal protein L7a-like [Vitis vinifera]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/142 (87%), Positives = 135/142 (95%), Gaps = 1/142 (0%)

Query: 1   MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQ 60
           MAPK+GGKV A   KKKPEKVVNPLFEKRPKQFGIGGALPPK+DLHR+VKWP  +RIQR+
Sbjct: 1   MAPKKGGKVLAQ-TKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLHRFVKWPHVVRIQRK 59

Query: 61  RRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT 120
           RRIL+QRLKVPPALNQFTKTLDKNLA+SLFK+LLKYRPED+AAKKERLLKRAQ+EAEGKT
Sbjct: 60  RRILKQRLKVPPALNQFTKTLDKNLATSLFKMLLKYRPEDKAAKKERLLKRAQSEAEGKT 119

Query: 121 VEAKKPIVVKYGLNHVTYLIEQ 142
           +E KKPIVVKYGLNHVTYLIEQ
Sbjct: 120 IEVKKPIVVKYGLNHVTYLIEQ 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226497590|ref|NP_001148801.1| LOC100282418 [Zea mays] gi|195622244|gb|ACG32952.1| 60S ribosomal protein L7a [Zea mays] gi|219887097|gb|ACL53923.1| unknown [Zea mays] gi|414886143|tpg|DAA62157.1| TPA: 60S ribosomal protein L7a [Zea mays]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/142 (87%), Positives = 135/142 (95%), Gaps = 1/142 (0%)

Query: 1   MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQ 60
           MAPKRGG+ A  PAKKK +KV NPLFEKRPKQFGIGGALPPKKDLHR+VKWPK +RIQRQ
Sbjct: 1   MAPKRGGR-APVPAKKKTDKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQ 59

Query: 61  RRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT 120
           RRIL+QRLKVPPALNQFT+TLDKNLA++LFK+LLKYRPED+AAKKERLLKRAQAE EGKT
Sbjct: 60  RRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAENEGKT 119

Query: 121 VEAKKPIVVKYGLNHVTYLIEQ 142
           VE+KKPIVVKYGLNHVTYLIEQ
Sbjct: 120 VESKKPIVVKYGLNHVTYLIEQ 141

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226502084|ref|NP_001147139.1| 60S ribosomal protein L7a [Zea mays] gi|194699752|gb|ACF83960.1| unknown [Zea mays] gi|195607614|gb|ACG25637.1| 60S ribosomal protein L7a [Zea mays] gi|414589924|tpg|DAA40495.1| TPA: 60S ribosomal protein L7a [Zea mays]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/142 (87%), Positives = 135/142 (95%), Gaps = 1/142 (0%)

Query: 1   MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQ 60
           MAPKRGG+ A  PAKKK +KV NPLFEKRPKQFGIGGALPPKKDLHR+VKWPK +RIQRQ
Sbjct: 1   MAPKRGGR-APVPAKKKTDKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQ 59

Query: 61  RRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT 120
           RRIL+QRLKVPPALNQFT+TLDKNLA++LFK+LLKYRPED+AAKKERLLKRAQAE EGKT
Sbjct: 60  RRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAENEGKT 119

Query: 121 VEAKKPIVVKYGLNHVTYLIEQ 142
           VE+KKPIVVKYGLNHVTYLIEQ
Sbjct: 120 VESKKPIVVKYGLNHVTYLIEQ 141

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204448|emb|CBI16928.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/142 (87%), Positives = 134/142 (94%), Gaps = 1/142 (0%)

Query: 1   MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQ 60
           M PK+GGK AA PAKKK EKVVNPLFEKRPKQFGIGGALPPKKDL R+VKWP  +RIQR+
Sbjct: 80  MGPKKGGK-AAVPAKKKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVKWPHVVRIQRK 138

Query: 61  RRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT 120
           RRILRQRLKVPPALNQFTKTLDKNLA++LFK+LLKYRPED+AAKKERLLKRAQAEAEGKT
Sbjct: 139 RRILRQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKT 198

Query: 121 VEAKKPIVVKYGLNHVTYLIEQ 142
            E+KKPIVVKYGLNH+TYLIEQ
Sbjct: 199 AESKKPIVVKYGLNHITYLIEQ 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451833|ref|XP_002281689.1| PREDICTED: 60S ribosomal protein L7a [Vitis vinifera] gi|147858681|emb|CAN81023.1| hypothetical protein VITISV_030542 [Vitis vinifera]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/142 (87%), Positives = 134/142 (94%), Gaps = 1/142 (0%)

Query: 1   MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQ 60
           M PK+GGK AA PAKKK EKVVNPLFEKRPKQFGIGGALPPKKDL R+VKWP  +RIQR+
Sbjct: 1   MGPKKGGK-AAVPAKKKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVKWPHVVRIQRK 59

Query: 61  RRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT 120
           RRILRQRLKVPPALNQFTKTLDKNLA++LFK+LLKYRPED+AAKKERLLKRAQAEAEGKT
Sbjct: 60  RRILRQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKT 119

Query: 121 VEAKKPIVVKYGLNHVTYLIEQ 142
            E+KKPIVVKYGLNH+TYLIEQ
Sbjct: 120 AESKKPIVVKYGLNHITYLIEQ 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2081715	256	AT3G62870 [Arabidopsis thalian	0.827	0.468	0.783	8.8e-47
TAIR|locus:2062057	257	AT2G47610 [Arabidopsis thalian	0.827	0.466	0.783	1.1e-46
CGD|CAL0000666	262	RPL82 [Candida albicans (taxid	0.820	0.454	0.561	3.8e-30
CGD|CAL0005018	262	RPL8B [Candida albicans (taxid	0.820	0.454	0.561	3.8e-30
UNIPROTKB|Q59WJ0	262	RPL82 "Likely cytosolic riboso	0.820	0.454	0.561	3.8e-30
UNIPROTKB|Q5ANA1	262	RPL8B "Likely cytosolic riboso	0.820	0.454	0.561	3.8e-30
POMBASE|SPBC29A3.04	259	rpl8 "60S ribosomal protein L7	0.820	0.459	0.545	7.1e-29
ZFIN|ZDB-GENE-031001-9	266	rpl7a "ribosomal protein L7a"	0.820	0.447	0.516	2.2e-27
UNIPROTKB|Q2TBQ5	266	RPL7A "60S ribosomal protein L	0.820	0.447	0.516	2.8e-27
UNIPROTKB|F2Z4P2	266	RPL7A "Uncharacterized protein	0.820	0.447	0.516	2.8e-27

TAIR|locus:2081715 AT3G62870 [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 94/120 (78%), Positives = 102/120 (85%)

Query:    23 NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
             NPLFE+RPKQFGIGGALPPKKDL RY+KWPK+              KVPPALNQFTKTLD
Sbjct:    20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79

Query:    83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ 142
             KNLA+SLFK+LLKYRPED+AAKKERLL +AQAEAEGK  E+KKPIVVKYGLNHVTYLIEQ
Sbjct:    80 KNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQ 139

GO:0005737 "cytoplasm" evidence=ISM

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2062057 AT2G47610 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 94/120 (78%), Positives = 103/120 (85%)

Query:    23 NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
             NPLFE+RPKQFGIGGALPPKKDL RY+KWPK+              KVPPALNQFTKTLD
Sbjct:    21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80

Query:    83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ 142
             KNLA+SLFK+LLKYRPED+AAKKERL+K+AQAEAEGK  E+KKPIVVKYGLNHVTYLIEQ
Sbjct:    81 KNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIEQ 140

GO:0005737 "cytoplasm" evidence=ISM

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

CGD|CAL0000666 RPL82 [Candida albicans (taxid:5476)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 68/121 (56%), Positives = 82/121 (67%)

Query:    23 NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
             NPLFE  PK FGIG ++ PK++L R+VKWP+               KVPP++ QF++TLD
Sbjct:    26 NPLFESTPKNFGIGQSIQPKRNLSRFVKWPEYVRLQRQKKILSLRLKVPPSIAQFSQTLD 85

Query:    83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLI 140
             KN A+  FKLL KYRPE  A KKERL K A A AEGKT +  + KP+VVKYGLNHV  LI
Sbjct:    86 KNTAAQAFKLLNKYRPETSAEKKERLTKEAAAIAEGKTAKDVSPKPVVVKYGLNHVVSLI 145

Query:   141 E 141
             E
Sbjct:   146 E 146

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0005018 RPL8B [Candida albicans (taxid:5476)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 68/121 (56%), Positives = 82/121 (67%)

Query:    23 NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
             NPLFE  PK FGIG ++ PK++L R+VKWP+               KVPP++ QF++TLD
Sbjct:    25 NPLFESTPKNFGIGQSIQPKRNLSRFVKWPEYVRLQRQKKILSLRLKVPPSIAQFSQTLD 84

Query:    83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLI 140
             KN A+  FKLL KYRPE  A KKERL K A A AEGKT +  + KP+VVKYGLNHV  LI
Sbjct:    85 KNTAAQAFKLLNKYRPETSAEKKERLTKEAAAIAEGKTAKDVSPKPVVVKYGLNHVVSLI 144

Query:   141 E 141
             E
Sbjct:   145 E 145

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q59WJ0 RPL82 "Likely cytosolic ribosomal protein L8" [Candida albicans SC5314 (taxid:237561)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 68/121 (56%), Positives = 82/121 (67%)

Query:    23 NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
             NPLFE  PK FGIG ++ PK++L R+VKWP+               KVPP++ QF++TLD
Sbjct:    26 NPLFESTPKNFGIGQSIQPKRNLSRFVKWPEYVRLQRQKKILSLRLKVPPSIAQFSQTLD 85

Query:    83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLI 140
             KN A+  FKLL KYRPE  A KKERL K A A AEGKT +  + KP+VVKYGLNHV  LI
Sbjct:    86 KNTAAQAFKLLNKYRPETSAEKKERLTKEAAAIAEGKTAKDVSPKPVVVKYGLNHVVSLI 145

Query:   141 E 141
             E
Sbjct:   146 E 146

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5ANA1 RPL8B "Likely cytosolic ribosomal protein L8" [Candida albicans SC5314 (taxid:237561)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 68/121 (56%), Positives = 82/121 (67%)

Query:    23 NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
             NPLFE  PK FGIG ++ PK++L R+VKWP+               KVPP++ QF++TLD
Sbjct:    25 NPLFESTPKNFGIGQSIQPKRNLSRFVKWPEYVRLQRQKKILSLRLKVPPSIAQFSQTLD 84

Query:    83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLI 140
             KN A+  FKLL KYRPE  A KKERL K A A AEGKT +  + KP+VVKYGLNHV  LI
Sbjct:    85 KNTAAQAFKLLNKYRPETSAEKKERLTKEAAAIAEGKTAKDVSPKPVVVKYGLNHVVSLI 144

Query:   141 E 141
             E
Sbjct:   145 E 145

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBC29A3.04 rpl8 "60S ribosomal protein L7a/L8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 66/121 (54%), Positives = 80/121 (66%)

Query:    23 NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
             NPLF  RP+ FGIG  + PK+DL R+VKWP+               KVPPA+ QF KTLD
Sbjct:    24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query:    83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLI 140
             KN A+ +FKLL KYRPE  A KK+RL+  A+A A GK+ +  +KKP  VKYGLNHV  LI
Sbjct:    84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143

Query:   141 E 141
             E
Sbjct:   144 E 144

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

ZFIN|ZDB-GENE-031001-9 rpl7a "ribosomal protein L7a" [Danio rerio (taxid:7955)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 62/120 (51%), Positives = 79/120 (65%)

Query:    23 NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
             NPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQFT+ LD
Sbjct:    29 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYVRLQRQRAILYKRLKVPPAINQFTQALD 88

Query:    83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIE 141
             +  A+ LFKL  KYRPE +  KK+RLL RA+ +A GK     K+P V++ G+N VT L+E
Sbjct:    89 RQTATQLFKLAHKYRPETKHEKKQRLLARAEQKAAGKGDTPTKRPPVLRAGVNTVTTLVE 148

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|Q2TBQ5 RPL7A "60S ribosomal protein L7a" [Bos taurus (taxid:9913)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 62/120 (51%), Positives = 79/120 (65%)

Query:    23 NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
             NPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQFT+ LD
Sbjct:    29 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 88

Query:    83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIE 141
             +  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+N VT L+E
Sbjct:    89 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 148

GO:0042788 "polysomal ribosome" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F2Z4P2 RPL7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 62/120 (51%), Positives = 79/120 (65%)

Query:    23 NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
             NPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQFT+ LD
Sbjct:    29 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 88

Query:    83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIE 141
             +  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+N VT L+E
Sbjct:    89 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 148

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P35685	RL7A_ORYSJ	No assigned EC number	0.8943	0.9724	0.5465	yes	no
P49692	RL7A1_ARATH	No assigned EC number	0.8709	0.8551	0.4824	yes	no
Q9LZH9	RL7A2_ARATH	No assigned EC number	0.8450	0.9586	0.5429	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
PTZ00365	266	PTZ00365, PTZ00365, 60S ribosomal protein L7Ae-lik	3e-49
PTZ00222	263	PTZ00222, PTZ00222, 60S ribosomal protein L7a; Pro	2e-27

>gnl|CDD|240382 PTZ00365, PTZ00365, 60S ribosomal protein L7Ae-like; Provisional

 Score =  158 bits (401), Expect = 3e-49
 Identities = 85/133 (63%), Positives = 101/133 (75%), Gaps = 1/133 (0%)

Query: 10  AAAPAKKKPEKVV-NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRL 68
           A AP KK  +K   +PLFEK P+ F IGG + PK DL RYV+WP+ I +QRQRR+L QRL
Sbjct: 13  APAPLKKSKKKKQKHPLFEKTPRNFRIGGDIRPKVDLSRYVRWPRYILLQRQRRVLLQRL 72

Query: 69  KVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIV 128
           KVPPALNQFT TLDKN AS L +LL KY+PE RA KK RLLK A+  A G+ VE+KKP +
Sbjct: 73  KVPPALNQFTYTLDKNQASQLLRLLSKYKPETRAEKKARLLKEAEKAAAGEEVESKKPFM 132

Query: 129 VKYGLNHVTYLIE 141
           +KYGLNHVT L+E
Sbjct: 133 LKYGLNHVTDLVE 145

Length = 266

>gnl|CDD|140249 PTZ00222, PTZ00222, 60S ribosomal protein L7a; Provisional

 Score =  102 bits (254), Expect = 2e-27
 Identities = 62/141 (43%), Positives = 90/141 (63%), Gaps = 3/141 (2%)

Query: 4   KRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRI 63
           K+  + A A +  K     +  F  RPK FGIG  +P  +DL R+++WP  + +QR++R+
Sbjct: 7   KKATQPAKAASPYKKPAAASH-FVARPKNFGIGQDVPYARDLSRFMRWPTFVTMQRKKRV 65

Query: 64  LRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEG--KTV 121
           L++RLKVPPALNQFTK LD++  + L KL+ KY PE R A+++RL K A+ + +   KTV
Sbjct: 66  LQRRLKVPPALNQFTKVLDRSSRNELLKLIKKYAPETRKARRDRLHKVAEEKKKDPKKTV 125

Query: 122 EAKKPIVVKYGLNHVTYLIEQ 142
             K P+ V  GL  VT  IE+
Sbjct: 126 STKAPLAVVTGLQEVTRAIEK 146

Length = 263

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
PTZ00365	266	60S ribosomal protein L7Ae-like; Provisional	100.0
PTZ00222	263	60S ribosomal protein L7a; Provisional	100.0
KOG3166	209	consensus 60S ribosomal protein L7A [Translation,	100.0

>PTZ00365 60S ribosomal protein L7Ae-like; Provisional

Probab=100.00  E-value=8.4e-66  Score=430.96  Aligned_cols=131  Identities=63%  Similarity=0.968  Sum_probs=126.0

Q ss_pred             ccccCCcccCCCCcccCCCccccCCCCCCCCcccccccCchhHHhHHHHHHHHhhhcCCCcccccccccchhhHHHHHHH
Q 032208           13 PAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTLDKNLASSLFKL   92 (145)
Q Consensus        13 ~~k~~~kk~~npLfekrpknfgiGqdiqpkrdltrfVkWP~YirlQrQk~iL~krLKVPPaInQFt~~Ldk~~atqLfkL   92 (145)
                      .++.+.++++|||||+|||||||||||||+|||||||+||+||||||||+||++||||||+||||+++||+|+|+|||+|
T Consensus        17 ~~~~~~~k~~~plfe~rpknf~iG~~iqpkrdlsrfvkwP~yirlQRqk~iL~~RlKvPp~inqF~~~ldk~~a~~lfkl   96 (266)
T PTZ00365         17 LKKSKKKKQKHPLFEKTPRNFRIGGDIRPKVDLSRYVRWPRYILLQRQRRVLLQRLKVPPALNQFTYTLDKNQASQLLRL   96 (266)
T ss_pred             ccccccccccCcccccCccccCcCCCCCCCccchhhcccchhhhHHHHHHHHHHhcCCCccHhhhhhhhcHhhHHHHHHH
Confidence            34445678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCceeeccchhhhHHhhhc
Q 032208           93 LLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQM  143 (145)
Q Consensus        93 l~KYrPEtk~eKk~RL~~~Ae~ka~gk~~~~kkp~vlk~GiN~VT~LVE~~  143 (145)
                      |+||||||++||++||+++||++|+|++.++++|++|++||||||++||++
T Consensus        97 l~KYrPEtk~~kk~RL~~~A~~~a~g~~~~~kkp~~vk~Gin~VtklIekk  147 (266)
T PTZ00365         97 LSKYKPETRAEKKARLLKEAEKAAAGEEVESKKPFMLKYGLNHVTDLVEYK  147 (266)
T ss_pred             HHhcCCccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhhHHHHHHHHhC
Confidence            999999999999999999999999999977999999999999999999985

>PTZ00222 60S ribosomal protein L7a; Provisional

Probab=100.00  E-value=2.6e-61  Score=403.22  Aligned_cols=123  Identities=45%  Similarity=0.785  Sum_probs=119.0

Q ss_pred             cCCCCcccCCCccccCCCCCCCCcccccccCchhHHhHHHHHHHHhhhcCCCcccccccccchhhHHHHHHHhhhcCcCC
Q 032208           21 VVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPED  100 (145)
Q Consensus        21 ~~npLfekrpknfgiGqdiqpkrdltrfVkWP~YirlQrQk~iL~krLKVPPaInQFt~~Ldk~~atqLfkLl~KYrPEt  100 (145)
                      ...||||+|||||||||||||+|||||||+||+||||||||+||++||||||+||||+++||+|+|+|||+||+||||||
T Consensus        23 ~~~~lfe~rpknf~ig~di~pkrdlsrfvkwP~yirlQrqk~iL~~rlKvPp~inqF~~~ldk~~a~~lfkll~KYrPEt  102 (263)
T PTZ00222         23 AAASHFVARPKNFGIGQDVPYARDLSRFMRWPTFVTMQRKKRVLQRRLKVPPALNQFTKVLDRSSRNELLKLIKKYAPET  102 (263)
T ss_pred             CcchhhhcCccccCCCCCCCCCccchhhhcchhhhhHHHHHHHHHHhcCCCchHhhhhhhhhHhhHHHHHHHHHHcCCcc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCC-CC-CCCCceeeccchhhhHHhhhc
Q 032208          101 RAAKKERLLKRAQAEAEGKT-VE-AKKPIVVKYGLNHVTYLIEQM  143 (145)
Q Consensus       101 k~eKk~RL~~~Ae~ka~gk~-~~-~kkp~vlk~GiN~VT~LVE~~  143 (145)
                      ++||++||+++||++++|++ .+ +++|++|.+|+|+||++||++
T Consensus       103 k~~kk~Rl~~~A~~~~~g~~~~~~~kkp~~LvsG~n~VtkaIekk  147 (263)
T PTZ00222        103 RKARRDRLHKVAEEKKKDPKKTVSTKAPLAVVTGLQEVTRAIEKK  147 (263)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCCCeeccCHHHHHHHHHcC
Confidence            99999999999999999999 44 499999999999999999986

>KOG3166 consensus 60S ribosomal protein L7A [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1e-48  Score=319.10  Aligned_cols=123  Identities=59%  Similarity=0.948  Sum_probs=116.0

Q ss_pred             CcccCCCCcccCCCccccCCCCCCCCcccccccCchhHHhHHHHHHHHhhhcCCCcccccccccchhhHHHHHHHhhhcC
Q 032208           18 PEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYR   97 (145)
Q Consensus        18 ~kk~~npLfekrpknfgiGqdiqpkrdltrfVkWP~YirlQrQk~iL~krLKVPPaInQFt~~Ldk~~atqLfkLl~KYr   97 (145)
                      +++++|||||+||+||||||||||+||||+||+||+||++|||++||+ ||||||+||||+++||.++|+++|+|+|+||
T Consensus         1 ~~k~~~~l~~~rp~nfg~gq~iqpk~dlt~~~k~p~~i~lq~q~~~l~-~lkvpp~i~qf~~~l~~~~a~~~~kl~hkyr   79 (209)
T KOG3166|consen    1 AKKVVNPLFEKRPKNFGIGQDIQPKRDLTCFVKWPRYIRLQRQKAILY-RLKVPPAINQFTQALDLQTATKLLKLAHKYR   79 (209)
T ss_pred             CCcccchhHHhcccccCcccccccccccccceeccHHHHhhhchhhhe-eeccCcchhhhhcccchHHHHHHHHHHhhcC
Confidence            368999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCC-CCCCCCceeeccchhhhHHhhhc
Q 032208           98 PEDRAAKKERLLKRAQAEAEGKT-VEAKKPIVVKYGLNHVTYLIEQM  143 (145)
Q Consensus        98 PEtk~eKk~RL~~~Ae~ka~gk~-~~~kkp~vlk~GiN~VT~LVE~~  143 (145)
                      ||++++++.|++++  +++++++ +++++|+++++|+||||+||||+
T Consensus        80 P~~~~~~~~r~~a~--~~~~~kg~v~tkrp~~~~~gvnTVttLVenK  124 (209)
T KOG3166|consen   80 PETKKKKKQRLLAE--AKAAGKGDVPTKRPPVLRAGVNTVTTLVENK  124 (209)
T ss_pred             chhhhhhhhhHHHH--HHHHhccCCCcCCCcccccCcceEeehhhcc
Confidence            99999888888754  5566666 89999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
3izr_H	258	Localization Of The Large Subunit Ribosomal Protein		4e-53
4a17_F	255	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-32
2zkr_f	266	Structure Of A Mammalian Ribosomal 60s Subunit With		4e-28
3izs_H	256	Localization Of The Large Subunit Ribosomal Protein		1e-27
3zf7_x	276	High-resolution Cryo-electron Microscopy Structure		3e-20
1s1i_G	119	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-05
3jyw_G	113	Structure Of The 60s Proteins For Eukaryotic Riboso		3e-04

>pdb|3IZR|H Chain H, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 258

Iteration: 1
 Score =  202 bits (515), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/120 (82%), Positives = 105/120 (87%)
Query: 23  NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
           NPLFEKRPKQFGIGGALPPKKDLHR+VKWPK               KVPPALNQFT+TLD
Sbjct: 22  NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 83  KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ 142
           KNLA++LFK+LLKYRPED+AAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ
Sbjct: 82  KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ 141

>pdb|4A17|F Chain F, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 255

Iteration: 1
 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 85/119 (71%)
Query: 23  NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
           NPLF+ +P+ F +GG + PK+DL R+V+WP+               KVPP ++QFTKTLD
Sbjct: 19  NPLFQAKPRSFRVGGDIQPKRDLTRFVRWPRYITLQRQKRVLLQRLKVPPQIHQFTKTLD 78
Query: 83  KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 141
           KN +S+LFKLL  Y PE  A KK+RL+ +A+A+ +GK VE KKPIV+KYGLNH+T LIE
Sbjct: 79  KNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIE 137

>pdb|2ZKR|FF Chain f, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 266

Iteration: 1
 Score =  119 bits (299), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Query: 23  NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
           NPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQFT+ LD
Sbjct: 29  NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 88
Query: 83  KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIE 141
           +  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+N VT L+E
Sbjct: 89  RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 148

>pdb|3IZS|H Chain H, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 256

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/122 (52%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 23  NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLD 82
           NPL    PK FGIG A+ PK++L RYVKWP+               KVPP + QF  TLD
Sbjct: 24  NPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQKKILSIRLKVPPTIAQFQYTLD 83
Query: 83  KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLI 140
           +N A+  FKL  KYRPE  A KKERL K A A AEGK+ +  + KP  VKYGLNHV  LI
Sbjct: 84  RNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALI 143
Query: 141 EQ 142
           E 
Sbjct: 144 EN 145

>pdb|3ZF7|XX Chain x, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 276

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 26  FEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNL 85
           F  RPK FGIG  +P  +DL R+++WP                KVPPALNQFTK LD++ 
Sbjct: 40  FVARPKDFGIGRDVPYARDLSRFMRWPTFVTMQRKKRVLQRRLKVPPALNQFTKVLDRSS 99
Query: 86  ASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEG--KTVEAKKPIVVKYGLNHVTYLIEQ 142
            + L KL+ KY PE R A+++RL K A+ + +    TV  K P+ V  GL  VT  IE+
Sbjct: 100 RNELLKLVKKYAPETRKARRDRLTKVAEEKKKNPKGTVSTKAPLCVVSGLQEVTRTIEK 158

>pdb|1S1I|G Chain G, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 119

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 102 AAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLIEQ 142
           A KKERL K A A AEGK+ +  + KP  VKYGLNHV  LIE 
Sbjct: 2   AEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIEN 44

>pdb|3JYW|G Chain G, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 113

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 106 ERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLIEQ 142
           ERL K A A AEGK+ +  + KP  VKYGLNHV  LIE 
Sbjct: 1   ERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIEN 39
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
3iz5_H	258	60S ribosomal protein L7A (L7AE); eukaryotic ribos	2e-34
4a17_F	255	RPL7A, 60S ribosomal protein L9; eukaryotic riboso	6e-33
3izc_H	256	60S ribosomal protein RPL8 (L7AE); eukaryotic ribo	9e-33
2zkr_f	266	60S ribosomal protein L7A; protein-RNA complex, 60	4e-30
3jyw_G	113	60S ribosomal protein L8(A); eukaryotic ribosome,	4e-06
2aif_A	135	Ribosomal protein L7A; high-mobility like protein,	6e-05

>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F Length = 255

 Score =  115 bits (289), Expect = 6e-33
 Identities = 77/133 (57%), Positives = 101/133 (75%)

Query: 10  AAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLK 69
                 KK EK  NPLF+ +P+ F +GG + PK+DL R+V+WP+ I +QRQ+R+L QRLK
Sbjct: 6   KKITKPKKAEKKKNPLFQAKPRSFRVGGDIQPKRDLTRFVRWPRYITLQRQKRVLLQRLK 65

Query: 70  VPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVV 129
           VPP ++QFTKTLDKN +S+LFKLL  Y PE  A KK+RL+ +A+A+ +GK VE KKPIV+
Sbjct: 66  VPPQIHQFTKTLDKNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVL 125

Query: 130 KYGLNHVTYLIEQ 142
           KYGLNH+T LIE 
Sbjct: 126 KYGLNHITTLIEN 138

>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 266

 Score =  108 bits (270), Expect = 4e-30
 Identities = 82/142 (57%), Positives = 105/142 (73%), Gaps = 4/142 (2%)

Query: 5   RGGKVAAAPA---KKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQR 61
           +G KVA APA   K++ +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+ IR+QRQR
Sbjct: 8   KGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQR 67

Query: 62  RILRQRLKVPPALNQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTV 121
            IL +RLKVPPA+NQFT+ LD+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  
Sbjct: 68  AILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGD 127

Query: 122 EA-KKPIVVKYGLNHVTYLIEQ 142
              K+P V++ G+N VT L+E 
Sbjct: 128 VPTKRPPVLRAGVNTVTTLVEN 149

>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G Length = 113

 Score = 42.3 bits (99), Expect = 4e-06
 Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 106 ERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLIEQM 143
           ERL K A A AEGK+ +  + KP  VKYGLNHV  LIE  
Sbjct: 1   ERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENK 40

>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Length = 135

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 8/61 (13%)

Query: 82  DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 141
            +N AS       K  P        +++   Q     K         ++ G N  T  + 
Sbjct: 3   SQNEASEDTGFNPKAFPLASPDLNNKIINLVQQACNYKQ--------LRKGANEATKALN 54

Query: 142 Q 142
           +
Sbjct: 55  R 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
4a17_F	255	RPL7A, 60S ribosomal protein L9; eukaryotic riboso	100.0
3iz5_H	258	60S ribosomal protein L7A (L7AE); eukaryotic ribos	100.0
3izc_H	256	60S ribosomal protein RPL8 (L7AE); eukaryotic ribo	100.0
2zkr_f	266	60S ribosomal protein L7A; protein-RNA complex, 60	100.0
3jyw_G	113	60S ribosomal protein L8(A); eukaryotic ribosome,	97.91

>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F

Probab=100.00  E-value=2.2e-68  Score=443.81  Aligned_cols=137  Identities=58%  Similarity=0.969  Sum_probs=120.2

Q ss_pred             CCCCCCCCCCCcccccCCcccCCCCcccCCCccccCCCCCCCCcccccccCchhHHhHHHHHHHHhhhcCCCcccccccc
Q 032208            1 MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKT   80 (145)
Q Consensus         1 m~~~~~~~~~~~~~k~~~kk~~npLfekrpknfgiGqdiqpkrdltrfVkWP~YirlQrQk~iL~krLKVPPaInQFt~~   80 (145)
                      |+|++|++.    ++  ..+++|||||+|||||||||||||+|||||||+||+||||||||+|||+||||||+||||+++
T Consensus         3 ~~p~~~~~~----~~--~~k~~nplfekrpknfgig~diqpkrdlt~fvkwp~yirlqrq~~il~~rlkvpp~inqf~~~   76 (255)
T 4a17_F            3 KAPKKITKP----KK--AEKKKNPLFQAKPRSFRVGGDIQPKRDLTRFVRWPRYITLQRQKRVLLQRLKVPPQIHQFTKT   76 (255)
T ss_dssp             ----------------------CCTTCCCCCCCSSSSSCCCCCCCGGGCBCCHHHHHHHHHHHHHHHSBCCHHHHGGGCC
T ss_pred             CCCccCccc----cc--cccccCcccccCCCcCCcCCCCCCccccccceeccceeeHHHHHHHHHhcccCCCcccccCCC
Confidence            778755532    12  248899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHhhhcCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCceeeccchhhhHHhhhc
Q 032208           81 LDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQM  143 (145)
Q Consensus        81 Ldk~~atqLfkLl~KYrPEtk~eKk~RL~~~Ae~ka~gk~~~~kkp~vlk~GiN~VT~LVE~~  143 (145)
                      ||+|+|+|||+|+|||||||++||++||+++||++|+|+++++++|++|+.|+|+||++||++
T Consensus        77 ld~~~a~ql~kl~~kyrpetk~ekk~rl~~~a~~ka~gk~~~~k~p~~lk~GvneVtKaIekg  139 (255)
T 4a17_F           77 LDKNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIENK  139 (255)
T ss_dssp             CCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTTCCCCCCCCCCEEECHHHHHHHHHTS
T ss_pred             CChhhHHHHHHHHHhcCccchHHHHHHHHHHHHHHhcCCCCCCCCCceeecchHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999999987

>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1.1e-63  Score=417.73  Aligned_cols=139  Identities=58%  Similarity=0.947  Sum_probs=44.4

Q ss_pred             CCCCCC-C--cccccCCcccCCCCcccCCCccccCCCCCCCCcccccccCchhHHhHHHHHHHHhhhcCCCccccccccc
Q 032208            5 RGGKVA-A--APAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTL   81 (145)
Q Consensus         5 ~~~~~~-~--~~~k~~~kk~~npLfekrpknfgiGqdiqpkrdltrfVkWP~YirlQrQk~iL~krLKVPPaInQFt~~L   81 (145)
                      +|++++ +  +.+++++++++|||||+|||||||||||||+|||||||+||+|||||||++||++||||||+||||+++|
T Consensus         8 ~~kk~~~~~~~~k~~~~~~~~npl~ekrpknf~ig~~i~pkrdl~rfvkwp~yirlqrq~~il~~rlkvpp~inqf~~~l   87 (266)
T 2zkr_f            8 KGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQAL   87 (266)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCcCCCCccccccccccccCCcccccCccccccCCCcccccchHhHhccchHHHHHHHHHHHHhhccCCCchhhccccc
Confidence            355554 3  4577788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHhhhcCcCCHHHHHHHHHHHHHHHHcCCC-CCCCCCceeeccchhhhHHhhhc
Q 032208           82 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT-VEAKKPIVVKYGLNHVTYLIEQM  143 (145)
Q Consensus        82 dk~~atqLfkLl~KYrPEtk~eKk~RL~~~Ae~ka~gk~-~~~kkp~vlk~GiN~VT~LVE~~  143 (145)
                      |+|+|+|||+|||||||||++||++||+++||++|+|++ +++++|..|..|+|+|+.+||++
T Consensus        88 d~~~a~~l~~l~~kyrpe~k~ekk~rl~~~a~~~a~~~~~~~~k~~~~L~~G~keV~KaIekg  150 (266)
T 2zkr_f           88 DRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENK  150 (266)
T ss_dssp             ----------------CHHHHHHHHHHHHTTSSTTTCCSCCSSSSCCCCCBSHHHHHHHHHTT
T ss_pred             cchhHHHHHHHHhhcCcccHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeeeChHHHHHHHHhC
Confidence            999999999999999999999999999999999999999 78999999999999999999986

>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G

Probab=97.91  E-value=1.5e-07  Score=69.54  Aligned_cols=38  Identities=61%  Similarity=0.783  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHcCCC--CCCCCCceeeccchhhhHHhhhc
Q 032208          106 ERLLKRAQAEAEGKT--VEAKKPIVVKYGLNHVTYLIEQM  143 (145)
Q Consensus       106 ~RL~~~Ae~ka~gk~--~~~kkp~vlk~GiN~VT~LVE~~  143 (145)
                      +||+++||++|+|++  +|+++|++|+.|+|+||++||++
T Consensus         1 ~rl~~~a~~~~~~~~~~~~~~~~~~l~~G~~~v~kaI~~g   40 (113)
T 3jyw_G            1 ERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENK   40 (113)
T ss_dssp             CCCCSSCCCHHHHHHHHTCSSSSSCEEESHHHHHHTTTTT
T ss_pred             CccHHHHHHHhcCCCCCCCCCCCchhhchHHHHHHHHHcC
Confidence            478888999999998  79999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00