Citrus Sinensis ID: 032230

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccEEEEEcccccHHHHHHHHccccccccccccccccccEEEEEEEEEccccccccHHHHHccEEEEEEcEEcccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHcccccccccccccccccccccccccccccccEEEEEcEEEEEEEEccEEEEEEEEccccHHHHHHHcccccccccccccccccEEEEEEccEEccccccccHHHHHHcEEEHHHcEEcccEEEEcccHHHcc
Coil and Loop (DISEMBL)
MAALSSAMVStsfirnkptvtslkampnMGQALFGLkannnrggRVIAMATYKVKlitpegeqeiecpddtyiLDAAEdagidlpyscragscstcagkvvsgsvdqsdgsfleddqidagYVLTCVAyptsdvtvethkdeems
Flexible Loop (DISEMBL)
maalssamvstsfirnkptvtslKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYptsdvtvethkdeems
Low Complexity Region (SEG)
MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKvvsgsvdqsdgsFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS
Disordered region (IsUnstruct)
****************************MGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDV***********
Disordered Region (DISOPRED)
***************************************************YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS
Disordered Region (DISEMBL)
**********TSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVT**********
Disordered Region (DISPRO)
*****************************************RGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
P16972	148	Ferredoxin-2, chloroplast	yes	no	0.979	0.959	0.727	4e-57
Q43517	144	Ferredoxin-1, chloroplast	N/A	no	0.986	0.993	0.689	4e-55
Q9ZTS2	144	Ferredoxin, chloroplastic	N/A	no	0.979	0.986	0.666	2e-54
O04683	148	Ferredoxin-1, chloroplast	N/A	no	0.972	0.952	0.703	2e-54
O04090	148	Ferredoxin-1, chloroplast	no	no	0.979	0.959	0.713	7e-51
P09911	149	Ferredoxin-1, chloroplast	N/A	no	0.965	0.939	0.643	5e-50
P04669	146	Ferredoxin, chloroplastic	N/A	no	0.951	0.945	0.662	1e-47
P00221	147	Ferredoxin-1, chloroplast	N/A	no	0.903	0.891	0.619	2e-43
P00228	143	Ferredoxin, chloroplastic	N/A	no	0.717	0.727	0.721	3e-42
P14938	96	Ferredoxin, leaf L-A OS=R	N/A	no	0.655	0.989	0.821	6e-42

>sp|P16972|FER2_ARATH Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1

 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 122/143 (85%), Gaps = 1/143 (0%)

Query: 3   ALSSAMVSTSFIRNKPTVTSLKAMPNMG-QALFGLKANNNRGGRVIAMATYKVKLITPEG 61
           ALSSA+V TSFIR  P   SL+++P+   Q+LFGLK+   RGGRV AMATYKVK ITPEG
Sbjct: 5   ALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEG 64

Query: 62  EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAG 121
           E E+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGKVVSGSVDQSD SFL+D+QI  G
Sbjct: 65  ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEG 124

Query: 122 YVLTCVAYPTSDVTVETHKDEEM 144
           +VLTC AYPTSDVT+ETHK+E++
Sbjct: 125 FVLTCAAYPTSDVTIETHKEEDI 147

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
Arabidopsis thaliana (taxid: 3702)

>sp|Q43517|FER1_SOLLC Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1

 Score =  213 bits (541), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/145 (68%), Positives = 121/145 (83%), Gaps = 2/145 (1%)

Query: 1   MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPE 60
           MA++S  M+STSF+  KP VTSLKA+ N+G+ALFGLK+  N  GR+  MA+YKVKLITPE
Sbjct: 1   MASISGTMISTSFLPRKPAVTSLKAISNVGEALFGLKSGRN--GRITCMASYKVKLITPE 58

Query: 61  GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDA 120
           G  E ECPDD YILD AE+ G DLPYSCRAGSCS+CAGKV +GSVDQSDG+FL++DQ  A
Sbjct: 59  GPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAA 118

Query: 121 GYVLTCVAYPTSDVTVETHKDEEMS 145
           G+VLTCVAYP  DVT+ETHK+EE++
Sbjct: 119 GFVLTCVAYPKGDVTIETHKEEELT 143

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Solanum lycopersicum (taxid: 4081)

>sp|Q9ZTS2|FER_CAPAN Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1

 Score =  210 bits (535), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 96/144 (66%), Positives = 123/144 (85%), Gaps = 2/144 (1%)

Query: 1   MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPE 60
           MA++S+ M+STSF+  KP VTSLK +PN+G+ALFGLK+ N  GG+V  MA+YKVKLITP+
Sbjct: 1   MASVSATMISTSFMPRKPAVTSLKPIPNVGEALFGLKSAN--GGKVTCMASYKVKLITPD 58

Query: 61  GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDA 120
           G  E +CPD+ YILD AE+AG DLPYSCRAGSCS+CAGK+  G+VDQ+DG+FL+DDQ++ 
Sbjct: 59  GPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEE 118

Query: 121 GYVLTCVAYPTSDVTVETHKDEEM 144
           G+VLTCVAYP SDVT+ETHK+ E+
Sbjct: 119 GWVLTCVAYPQSDVTIETHKEAEL 142

Delays the harpin-mediated hypersensitive response.

Capsicum annuum (taxid: 4072)

>sp|O04683|FER1_MESCR Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  210 bits (535), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 124/145 (85%), Gaps = 4/145 (2%)

Query: 2   AALSSAMVSTSFIRNKPTVTSLKAMP-NMGQALFGLKANNNRGGRVIAMATYKVKLITPE 60
           AALS A +ST+F    P +T+  A+P N+G+ALFGLK++ +RG RV AMA YKV L+TPE
Sbjct: 6   AALSGATMSTAFAPKTPPMTA--ALPTNVGRALFGLKSSASRG-RVTAMAAYKVTLVTPE 62

Query: 61  GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDA 120
           G+QE+ECPDD YILDAAE+AGIDLPYSCRAGSCS+CAGKV SGSV+Q DGSFL+DDQI  
Sbjct: 63  GKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKE 122

Query: 121 GYVLTCVAYPTSDVTVETHKDEEMS 145
           G+VLTCVAYPT DVT+ETHK+EE++
Sbjct: 123 GWVLTCVAYPTGDVTIETHKEEELT 147

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|O04090|FER1_ARATH Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1

 Score =  199 bits (505), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 102/143 (71%), Positives = 124/143 (86%), Gaps = 1/143 (0%)

Query: 3   ALSSAMVSTSFIRNKPTVTSLKAMPNMG-QALFGLKANNNRGGRVIAMATYKVKLITPEG 61
           ALSSA+VSTSF+R + T  SL+++P    Q+LFGLK++  RGGRV AMATYKVK ITPEG
Sbjct: 5   ALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG 64

Query: 62  EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAG 121
           EQE+EC +D Y+LDAAE+AG+DLPYSCRAGSCS+CAGKVVSGS+DQSD SFL+D+Q+  G
Sbjct: 65  EQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEG 124

Query: 122 YVLTCVAYPTSDVTVETHKDEEM 144
           YVLTCVAYPTSDV +ETHK+E +
Sbjct: 125 YVLTCVAYPTSDVVIETHKEEAI 147

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Arabidopsis thaliana (taxid: 3702)

>sp|P09911|FER1_PEA Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2

 Score =  196 bits (497), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/146 (64%), Positives = 114/146 (78%), Gaps = 6/146 (4%)

Query: 3   ALSSAMVSTSFIRNKP---TVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITP 59
           AL    VSTSF+R +P   +VT+ KA  N      GLK +  RG   +AMA+YKVKL+TP
Sbjct: 6   ALYGTAVSTSFLRTQPMPMSVTTTKAFSN---GFLGLKTSLKRGDLAVAMASYKVKLVTP 62

Query: 60  EGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQID 119
           +G QE ECP D YILD AE+ GIDLPYSCRAGSCS+CAGKVV G VDQSDGSFL+D+QI+
Sbjct: 63  DGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIE 122

Query: 120 AGYVLTCVAYPTSDVTVETHKDEEMS 145
           AG+VLTCVAYPTSDV +ETHK+E+++
Sbjct: 123 AGFVLTCVAYPTSDVVIETHKEEDLT 148

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Pisum sativum (taxid: 3888)

>sp|P04669|FER_SILPR Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 117/145 (80%), Gaps = 7/145 (4%)

Query: 4   LSSAMVSTSFI-RNKPTVTSLKAMP-NMGQALFGLKANNNRGGRVIAMATYKVKLITPE- 60
           LS+  VS S + + +P V S  ++P NMGQALFGLKA +   GRV AMATYKV LIT E 
Sbjct: 5   LSTLSVSASLLPKQQPMVAS--SLPTNMGQALFGLKAGSR--GRVTAMATYKVTLITKES 60

Query: 61  GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDA 120
           G    +CPDD Y+LD AE+ GIDLPYSCRAGSCS+CAGKVV+GSVDQSD SFL+DDQI+A
Sbjct: 61  GTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEA 120

Query: 121 GYVLTCVAYPTSDVTVETHKDEEMS 145
           G+VLTC AYP++DVT+ETHK+EE++
Sbjct: 121 GWVLTCAAYPSADVTIETHKEEELT 145

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Silene pratensis (taxid: 52853)

>sp|P00221|FER1_SPIOL Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2

 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/134 (61%), Positives = 104/134 (77%), Gaps = 3/134 (2%)

Query: 13  FIRNKPTVTSLKAMP-NMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDT 71
           F+        + A+P N G++LFGLK   +RGGR + MA YKV L+TP G  E +CPDD 
Sbjct: 15  FVPKPQAPPMMAALPSNTGRSLFGLK-TGSRGGR-MTMAAYKVTLVTPTGNVEFQCPDDV 72

Query: 72  YILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT 131
           YILDAAE+ GIDLPYSCRAGSCS+CAGK+ +GS++Q D SFL+DDQID G+VLTC AYP 
Sbjct: 73  YILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPV 132

Query: 132 SDVTVETHKDEEMS 145
           SDVT+ETHK+EE++
Sbjct: 133 SDVTIETHKEEELT 146

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Spinacia oleracea (taxid: 3562)

>sp|P00228|FER_WHEAT Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 75/104 (72%), Positives = 91/104 (87%)

Query: 42  RGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVV 101
           RG R+ A ATYKVKL+TPEGE E+E PDD YILD AE+ GIDLPYSCRAGSCS+CAGK+V
Sbjct: 39  RGARLRAQATYKVKLVTPEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLV 98

Query: 102 SGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
           SG +DQSD SFL+DDQ++AG+VLTC AYP SD+ +ETHK+EE++
Sbjct: 99  SGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEELT 142

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Triticum aestivum (taxid: 4565)

>sp|P14938|FER3_RAPSA Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1

 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 88/95 (92%)

Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSD 109
           ATYKVK ITPEGEQE+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGKVVSGSVDQSD
Sbjct: 1   ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSD 60

Query: 110 GSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
            SFL+DDQI  G+VLTC AYPTSDVT+ETH++E+M
Sbjct: 61  QSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Raphanus sativus (taxid: 3726)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
225448219	142	PREDICTED: ferredoxin-1, chloroplastic-l	0.972	0.992	0.731	3e-57
255579667	145	Ferredoxin-2, chloroplast precursor, put	0.958	0.958	0.725	2e-56
297840471	148	fed A [Arabidopsis lyrata subsp. lyrata]	0.979	0.959	0.727	7e-56
312281725	148	unnamed protein product [Thellungiella h	0.979	0.959	0.727	2e-55
15219837	148	ferredoxin-2 [Arabidopsis thaliana] gi|1	0.979	0.959	0.727	2e-55
58045197	144	chloroplast ferredoxin I [Nicotiana taba	0.986	0.993	0.703	4e-55
45357074	144	chloroplast ferredoxin I [Nicotiana taba	0.986	0.993	0.703	9e-55
78192120	144	chloroplast Tsip1-interacting ferredoxin	0.986	0.993	0.696	1e-54
224118360	147	predicted protein [Populus trichocarpa]	0.972	0.959	0.731	8e-54
350537877	144	ferredoxin-1, chloroplastic [Solanum lyc	0.986	0.993	0.689	2e-53

>gi|225448219|ref|XP_002269617.1| PREDICTED: ferredoxin-1, chloroplastic-like [Vitis vinifera]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 125/145 (86%), Gaps = 4/145 (2%)

Query: 1   MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPE 60
           MA LS AMVSTSFIR +P VTSL+A+PN+GQALFGLKA     GRV AMA YKVKLITPE
Sbjct: 1   MATLSGAMVSTSFIRRQP-VTSLRALPNVGQALFGLKAGR---GRVTAMAVYKVKLITPE 56

Query: 61  GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDA 120
           G +E ECPDD Y+LD AE+ GIDLPYSCRAGSCS+CAG+VV G+VDQSDGSFLED+Q++ 
Sbjct: 57  GAKEFECPDDVYVLDHAEEIGIDLPYSCRAGSCSSCAGRVVEGTVDQSDGSFLEDEQMEE 116

Query: 121 GYVLTCVAYPTSDVTVETHKDEEMS 145
           G+VLTCVAYP SD+ +ETHK+EE++
Sbjct: 117 GWVLTCVAYPQSDLVIETHKEEELT 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579667|ref|XP_002530673.1| Ferredoxin-2, chloroplast precursor, putative [Ricinus communis] gi|223529766|gb|EEF31704.1| Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 129/142 (90%), Gaps = 3/142 (2%)

Query: 3   ALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGE 62
           ALSSA+VSTSF R +P VTSL+A+PN+GQALFGL  N++RGG+  AMA +KVKLITPEGE
Sbjct: 5   ALSSAVVSTSFTRRQP-VTSLRALPNVGQALFGL--NSSRGGKFKAMAVHKVKLITPEGE 61

Query: 63  QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGY 122
           +E+ECPDD YILD  E+AG+DLPYSCRAGSCS+CAGKVVSG++DQSDGSFL+D+Q++AG+
Sbjct: 62  KELECPDDVYILDHFEEAGVDLPYSCRAGSCSSCAGKVVSGTLDQSDGSFLDDEQMEAGW 121

Query: 123 VLTCVAYPTSDVTVETHKDEEM 144
           VLTCVAYP SD+ +ETHK+E++
Sbjct: 122 VLTCVAYPQSDLVIETHKEEDL 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840471|ref|XP_002888117.1| fed A [Arabidopsis lyrata subsp. lyrata] gi|297333958|gb|EFH64376.1| fed A [Arabidopsis lyrata subsp. lyrata]

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 123/143 (86%), Gaps = 1/143 (0%)

Query: 3   ALSSAMVSTSFIRNKPTVTSLKAMPNMG-QALFGLKANNNRGGRVIAMATYKVKLITPEG 61
           ALSSA+V TSFIR  P   SL+++P+   Q+LFGLK+   RGGRV AMATYKVK ITPEG
Sbjct: 5   ALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEG 64

Query: 62  EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAG 121
           EQE+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGKVVSGSVDQSD SFL+D+QI  G
Sbjct: 65  EQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGQG 124

Query: 122 YVLTCVAYPTSDVTVETHKDEEM 144
           +VLTC AYPTSDVT+ETHK++++
Sbjct: 125 FVLTCAAYPTSDVTIETHKEDDL 147

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281725|dbj|BAJ33728.1| unnamed protein product [Thellungiella halophila]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 124/143 (86%), Gaps = 1/143 (0%)

Query: 3   ALSSAMVSTSFIRNKPTVTSLKAMPNMG-QALFGLKANNNRGGRVIAMATYKVKLITPEG 61
           ALSSA+V TSFIR +    SL+++P+   Q+LFGLK+  +RGGRV AMATYKVK ITPEG
Sbjct: 5   ALSSAIVGTSFIRRQTAPISLRSLPSGNTQSLFGLKSATSRGGRVTAMATYKVKFITPEG 64

Query: 62  EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAG 121
           EQE+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGKVV+GSVDQSD SFL+DDQI  G
Sbjct: 65  EQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVTGSVDQSDQSFLDDDQIGEG 124

Query: 122 YVLTCVAYPTSDVTVETHKDEEM 144
           +VLTC AYPTSDVT+ETHK+E++
Sbjct: 125 FVLTCAAYPTSDVTIETHKEEDI 147

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219837|ref|NP_176291.1| ferredoxin-2 [Arabidopsis thaliana] gi|119975|sp|P16972.1|FER2_ARATH RecName: Full=Ferredoxin-2, chloroplastic; Short=AtFd2; Flags: Precursor gi|11692908|gb|AAG40057.1|AF324706_1 At1g60950 [Arabidopsis thaliana] gi|11908076|gb|AAG41467.1|AF326885_1 putative ferrodoxin precursor protein [Arabidopsis thaliana] gi|12323344|gb|AAG51652.1|AC018908_18 ferrodoxin precursor; 39650-40096 [Arabidopsis thaliana] gi|12642890|gb|AAK00387.1|AF339705_1 putative ferrodoxin precursor protein [Arabidopsis thaliana] gi|16437|emb|CAA35754.1| ferredoxin precursor [Arabidopsis thaliana] gi|166698|gb|AAA32790.1| ferrodoxin A [Arabidopsis thaliana] gi|20260270|gb|AAM13033.1| ferrodoxin precursor [Arabidopsis thaliana] gi|22136516|gb|AAM91336.1| ferrodoxin precursor [Arabidopsis thaliana] gi|110740859|dbj|BAE98526.1| ferrodoxin precursor [Arabidopsis thaliana] gi|332195631|gb|AEE33752.1| ferredoxin-2 [Arabidopsis thaliana]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 122/143 (85%), Gaps = 1/143 (0%)

Query: 3   ALSSAMVSTSFIRNKPTVTSLKAMPNMG-QALFGLKANNNRGGRVIAMATYKVKLITPEG 61
           ALSSA+V TSFIR  P   SL+++P+   Q+LFGLK+   RGGRV AMATYKVK ITPEG
Sbjct: 5   ALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEG 64

Query: 62  EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAG 121
           E E+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGKVVSGSVDQSD SFL+D+QI  G
Sbjct: 65  ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEG 124

Query: 122 YVLTCVAYPTSDVTVETHKDEEM 144
           +VLTC AYPTSDVT+ETHK+E++
Sbjct: 125 FVLTCAAYPTSDVTIETHKEEDI 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58045197|gb|AAW64931.1| chloroplast ferredoxin I [Nicotiana tabacum]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 123/145 (84%), Gaps = 2/145 (1%)

Query: 1   MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPE 60
           MA++S  MVSTSF+  KP VTSLKA+PN+GQALFGLK+   RGGR+  MA+YKVKLITPE
Sbjct: 1   MASISGTMVSTSFLPRKPVVTSLKAIPNVGQALFGLKSE--RGGRITCMASYKVKLITPE 58

Query: 61  GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDA 120
           G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGKV  G+VDQSDG+FL+DDQ+  
Sbjct: 59  GTVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTGGNVDQSDGNFLDDDQMAG 118

Query: 121 GYVLTCVAYPTSDVTVETHKDEEMS 145
           G+VLTCVAYP SDVT+ETHK+EE++
Sbjct: 119 GFVLTCVAYPQSDVTIETHKEEELT 143

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45357074|gb|AAS58496.1| chloroplast ferredoxin I [Nicotiana tabacum]

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 123/145 (84%), Gaps = 2/145 (1%)

Query: 1   MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPE 60
           MA++S  MVSTSF+  KP VTSLKA+PN+GQALFGLK+   RGGR+  MA+YKVKLITPE
Sbjct: 1   MASISGTMVSTSFLPRKPVVTSLKAIPNVGQALFGLKSE--RGGRITCMASYKVKLITPE 58

Query: 61  GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDA 120
           G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGKV  G+VDQSDG+FL+DDQ+  
Sbjct: 59  GTVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTGGNVDQSDGNFLDDDQMAD 118

Query: 121 GYVLTCVAYPTSDVTVETHKDEEMS 145
           G+VLTCVAYP SDVT+ETHK+EE++
Sbjct: 119 GFVLTCVAYPQSDVTIETHKEEELT 143

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78192120|gb|ABB30150.1| chloroplast Tsip1-interacting ferredoxin [Nicotiana tabacum]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/145 (69%), Positives = 123/145 (84%), Gaps = 2/145 (1%)

Query: 1   MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPE 60
           MA++S  MVSTSF+  KP VTSLKA+PN+GQALFGLK+   RGGR+  MA+YKVKLITPE
Sbjct: 1   MASISGTMVSTSFLPRKPVVTSLKAIPNVGQALFGLKSE--RGGRITCMASYKVKLITPE 58

Query: 61  GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDA 120
           G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGKV  G++DQSDG+FL+DDQ+  
Sbjct: 59  GTVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTGGNIDQSDGNFLDDDQMAD 118

Query: 121 GYVLTCVAYPTSDVTVETHKDEEMS 145
           G+VLTCVAYP SDVT+ETHK+EE++
Sbjct: 119 GFVLTCVAYPQSDVTIETHKEEELT 143

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118360|ref|XP_002331463.1| predicted protein [Populus trichocarpa] gi|118487669|gb|ABK95659.1| unknown [Populus trichocarpa] gi|118489201|gb|ABK96407.1| unknown [Populus trichocarpa x Populus deltoides] gi|222873541|gb|EEF10672.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (545), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 123/145 (84%), Gaps = 4/145 (2%)

Query: 2   AALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEG 61
           AALSSAMVSTSF R  P VTSL+A+PN+G++L GLKA+  RGGRV AMA Y VKLITP+G
Sbjct: 5   AALSSAMVSTSFTRRVP-VTSLRALPNVGESLLGLKAS--RGGRVKAMAAYTVKLITPDG 61

Query: 62  EQEIECPDDTYILDAAEDAG-IDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDA 120
           E+E  CPDD YILD AE+A  IDLPYSCRAGSCS+C GK+V G+VDQSD SFL+DDQI+ 
Sbjct: 62  EKEFACPDDIYILDHAEEAEEIDLPYSCRAGSCSSCLGKIVKGTVDQSDASFLDDDQIEE 121

Query: 121 GYVLTCVAYPTSDVTVETHKDEEMS 145
           G+VLTCVAYPTSDV +ETHK+EE S
Sbjct: 122 GWVLTCVAYPTSDVVIETHKEEEFS 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537877|ref|NP_001234059.1| ferredoxin-1, chloroplastic [Solanum lycopersicum] gi|3023752|sp|Q43517.1|FER1_SOLLC RecName: Full=Ferredoxin-1, chloroplastic; AltName: Full=Ferredoxin I; Flags: Precursor gi|1418982|emb|CAA99756.1| ferredoxin-I [Solanum lycopersicum]

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/145 (68%), Positives = 121/145 (83%), Gaps = 2/145 (1%)

Query: 1   MAALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPE 60
           MA++S  M+STSF+  KP VTSLKA+ N+G+ALFGLK+  N  GR+  MA+YKVKLITPE
Sbjct: 1   MASISGTMISTSFLPRKPAVTSLKAISNVGEALFGLKSGRN--GRITCMASYKVKLITPE 58

Query: 61  GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDA 120
           G  E ECPDD YILD AE+ G DLPYSCRAGSCS+CAGKV +GSVDQSDG+FL++DQ  A
Sbjct: 59  GPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAA 118

Query: 121 GYVLTCVAYPTSDVTVETHKDEEMS 145
           G+VLTCVAYP  DVT+ETHK+EE++
Sbjct: 119 GFVLTCVAYPKGDVTIETHKEEELT 143

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2206061	148	FED A [Arabidopsis thaliana (t	0.979	0.959	0.650	5.4e-47
TAIR|locus:2197349	148	FD1 "ferredoxin 1" [Arabidopsi	0.965	0.945	0.652	1.4e-46
UNIPROTKB|P09911	149	PETF "Ferredoxin-1, chloroplas	0.965	0.939	0.575	1.2e-40
UNIPROTKB|P00221	147	PETF "Ferredoxin-1, chloroplas	0.986	0.972	0.560	1.1e-39
UNIPROTKB|P27320	97	petF "Ferredoxin-1" [Synechocy	0.662	0.989	0.708	4e-35
UNIPROTKB|P83522	97	P83522 "Ferredoxin" [Hordeum v	0.662	0.989	0.656	4.7e-32
UNIPROTKB|P83585	97	P83585 "Ferredoxin" [Solanum a	0.662	0.989	0.666	4.7e-32
UNIPROTKB|P83526	97	P83526 "Ferredoxin" [Nicotiana	0.662	0.989	0.656	2e-31
UNIPROTKB|P68163	97	P68163 "Ferredoxin" [Datura in	0.662	0.989	0.635	2.6e-31
UNIPROTKB|P68164	97	P68164 "Ferredoxin" [Datura me	0.662	0.989	0.635	2.6e-31

TAIR|locus:2206061 FED A [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 93/143 (65%), Positives = 111/143 (77%)

Query:     3 ALSSAMVSTSFIRNKPTVTSLKAMPNMG-QALFGLKANNNRGGRVIAMATYKVKLITPEG 61
             ALSSA+V TSFIR  P   SL+++P+   Q+LFGLK+   RGGRV AMATYKVK ITPEG
Sbjct:     5 ALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEG 64

Query:    62 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAG 121
             E E+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGK            FL+D+QI  G
Sbjct:    65 ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEG 124

Query:   122 YVLTCVAYPTSDVTVETHKDEEM 144
             +VLTC AYPTSDVT+ETHK+E++
Sbjct:   125 FVLTCAAYPTSDVTIETHKEEDI 147

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP;TAS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=TAS

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2197349 FD1 "ferredoxin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 92/141 (65%), Positives = 112/141 (79%)

Query:     3 ALSSAMVSTSFIRNKPTVTSLKAMPNMG-QALFGLKANNNRGGRVIAMATYKVKLITPEG 61
             ALSSA+VSTSF+R + T  SL+++P    Q+LFGLK++  RGGRV AMATYKVK ITPEG
Sbjct:     5 ALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG 64

Query:    62 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAG 121
             EQE+EC +D Y+LDAAE+AG+DLPYSCRAGSCS+CAGK            FL+D+Q+  G
Sbjct:    65 EQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEG 124

Query:   122 YVLTCVAYPTSDVTVETHKDE 142
             YVLTCVAYPTSDV +ETHK+E
Sbjct:   125 YVLTCVAYPTSDVVIETHKEE 145

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

UNIPROTKB|P09911 PETF "Ferredoxin-1, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 84/146 (57%), Positives = 104/146 (71%)

Query:     3 ALSSAMVSTSFIRNKP---TVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITP 59
             AL    VSTSF+R +P   +VT+ KA  N      GLK +  RG   +AMA+YKVKL+TP
Sbjct:     6 ALYGTAVSTSFLRTQPMPMSVTTTKAFSN---GFLGLKTSLKRGDLAVAMASYKVKLVTP 62

Query:    60 EGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQID 119
             +G QE ECP D YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+D+QI+
Sbjct:    63 DGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIE 122

Query:   120 AGYVLTCVAYPTSDVTVETHKDEEMS 145
             AG+VLTCVAYPTSDV +ETHK+E+++
Sbjct:   123 AGFVLTCVAYPTSDVVIETHKEEDLT 148

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P00221 PETF "Ferredoxin-1, chloroplastic" [Spinacia oleracea (taxid:3562)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 83/148 (56%), Positives = 105/148 (70%)

Query:     1 MAALSSAMV--STSFIRNKPTVTSLKAMP-NMGQALFGLKANNNRGGRVIAMATYKVKLI 57
             MAA ++ M+  +T+F+        + A+P N G++LFGLK  + RGGR+  MA YKV L+
Sbjct:     1 MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGS-RGGRM-TMAAYKVTLV 58

Query:    58 TPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQ 117
             TP G  E +CPDD YILDAAE+ GIDLPYSCRAGSCS+CAGK            FL+DDQ
Sbjct:    59 TPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQ 118

Query:   118 IDAGYVLTCVAYPTSDVTVETHKDEEMS 145
             ID G+VLTC AYP SDVT+ETHK+EE++
Sbjct:   119 IDEGWVLTCAAYPVSDVTIETHKEEELT 146

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P27320 petF "Ferredoxin-1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 68/96 (70%), Positives = 79/96 (82%)

Query:    49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXX 108
             MA+Y VKLITP+GE  IEC DDTYILDAAE+AG+DLPYSCRAG+CSTCAGK         
Sbjct:     1 MASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQS 60

Query:   109 XXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
                FL+DDQI+AGYVLTCVAYPTSD T+ETHK+E++
Sbjct:    61 DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96

GO:0005515 "protein binding" evidence=IPI

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IDA

UNIPROTKB|P83522 P83522 "Ferredoxin" [Hordeum vulgare (taxid:4513)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 63/96 (65%), Positives = 75/96 (78%)

Query:    50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
             ATYKVKL+TPEGE E+E PDD YILD AE+ GIDLPYSCRAGSCS+CAGK          
Sbjct:     1 ATYKVKLVTPEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSD 60

Query:   110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
               FL+DDQ++ G+VLTC AYP SDV +ETHK+EE++
Sbjct:    61 QSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEELT 96

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

UNIPROTKB|P83585 P83585 "Ferredoxin" [Solanum abutiloides (taxid:45831)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 64/96 (66%), Positives = 74/96 (77%)

Query:    50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
             ATYKVKL+TP+G  E ECPDD YILD AE+ G DLPYSCRAGSCS+CAGK          
Sbjct:     1 ATYKVKLVTPDGPVEFECPDDEYILDRAEEEGHDLPYSCRAGSCSSCAGKIAAGSVDQSD 60

Query:   110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
               FL+DDQI  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    61 GNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEELT 96

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=NAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

UNIPROTKB|P83526 P83526 "Ferredoxin" [Nicotiana tabacum (taxid:4097)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 63/96 (65%), Positives = 74/96 (77%)

Query:    50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
             A+YKVKLITPEG  E +CPDD YILD AE+ G DLPYSCRAGSCS+CAGK          
Sbjct:     1 ASYKVKLITPEGAVEFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSD 60

Query:   110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
               FL+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    61 GNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELT 96

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

UNIPROTKB|P68163 P68163 "Ferredoxin" [Datura inoxia (taxid:4075)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 61/96 (63%), Positives = 74/96 (77%)

Query:    50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
             ATYKVKL+TP+G  E +CPDD YILD AE+ G DLPYSCRAGSCS+CAGK          
Sbjct:     1 ATYKVKLVTPDGPVEFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSD 60

Query:   110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
               +L+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    61 GNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELT 96

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

UNIPROTKB|P68164 P68164 "Ferredoxin" [Datura metel (taxid:35625)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 61/96 (63%), Positives = 74/96 (77%)

Query:    50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
             ATYKVKL+TP+G  E +CPDD YILD AE+ G DLPYSCRAGSCS+CAGK          
Sbjct:     1 ATYKVKLVTPDGPVEFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSD 60

Query:   110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
               +L+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    61 GNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELT 96

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P00228	FER_WHEAT	No assigned EC number	0.7211	0.7172	0.7272	N/A	no
P00243	FER_SYNY4	No assigned EC number	0.7916	0.6620	0.9896	N/A	no
P00244	FER1_APHFL	No assigned EC number	0.7628	0.6620	0.9795	N/A	no
P85121	FER_PANGI	No assigned EC number	0.7741	0.6413	0.9687	N/A	no
P00222	FER_COLES	No assigned EC number	0.75	0.6620	0.9896	N/A	no
P00223	FER_ARCLA	No assigned EC number	0.7835	0.6551	0.9793	N/A	no
P00220	FER_MEDSA	No assigned EC number	0.75	0.6620	0.9896	N/A	no
P14938	FER3_RAPSA	No assigned EC number	0.8210	0.6551	0.9895	N/A	no
P00226	FER_SAMNI	No assigned EC number	0.75	0.6620	0.9896	N/A	no
P00227	FER_BRANA	No assigned EC number	0.8210	0.6551	0.9895	N/A	no
P00224	FER2_SPIOL	No assigned EC number	0.7395	0.6620	0.9896	N/A	no
P27789	FER5_MAIZE	No assigned EC number	0.6341	0.8137	0.8740	N/A	no
O04683	FER1_MESCR	No assigned EC number	0.7034	0.9724	0.9527	N/A	no
Q43517	FER1_SOLLC	No assigned EC number	0.6896	0.9862	0.9930	N/A	no
O04090	FER1_ARATH	No assigned EC number	0.7132	0.9793	0.9594	no	no
Q9ZTS2	FER_CAPAN	No assigned EC number	0.6666	0.9793	0.9861	N/A	no
P04669	FER_SILPR	No assigned EC number	0.6620	0.9517	0.9452	N/A	no
P00247	FER_CHLFR	No assigned EC number	0.7755	0.6620	0.9696	N/A	no
Q0J8M2	FER1_ORYSJ	No assigned EC number	0.6788	0.7517	0.7841	yes	no
P00248	FER_MASLA	No assigned EC number	0.7653	0.6620	0.9696	N/A	no
P81373	FERB_ALOMA	No assigned EC number	0.7628	0.6620	0.9795	N/A	no
P81372	FERA_ALOMA	No assigned EC number	0.7395	0.6620	0.9896	N/A	no
P83526	FER_TOBAC	No assigned EC number	0.7395	0.6620	0.9896	N/A	no
P83527	FER_CAPAA	No assigned EC number	0.7157	0.6551	0.9793	N/A	no
P83520	FER_DATAR	No assigned EC number	0.7187	0.6620	0.9896	N/A	no
P84872	FER_ATRBE	No assigned EC number	0.7187	0.6620	0.9896	N/A	no
P83522	FER_HORVU	No assigned EC number	0.7395	0.6620	0.9896	N/A	no
P31965	FER1_SYNP2	No assigned EC number	0.7395	0.6620	0.9896	yes	no
P27320	FER_SYNY3	No assigned EC number	0.7916	0.6620	0.9896	N/A	no
P00238	FER_SCEQU	No assigned EC number	0.7473	0.6551	0.9895	N/A	no
P00221	FER1_SPIOL	No assigned EC number	0.6194	0.9034	0.8911	N/A	no
P00230	FER1_PHYAN	No assigned EC number	0.7395	0.6620	1.0	N/A	no
P27787	FER1_MAIZE	No assigned EC number	0.6159	0.9310	0.9	N/A	no
P83524	FER_PHYAF	No assigned EC number	0.7291	0.6620	0.9896	N/A	no
P83582	FER_SOLNI	No assigned EC number	0.7083	0.6620	0.9896	N/A	no
P83583	FER_SOLLY	No assigned EC number	0.7052	0.6551	0.9793	N/A	no
P83585	FER_SOLAB	No assigned EC number	0.75	0.6620	0.9896	N/A	no
P00229	FER1_PHYAM	No assigned EC number	0.7263	0.6551	0.9895	N/A	no
P68166	FER_DATQU	No assigned EC number	0.7187	0.6620	0.9896	N/A	no
P09911	FER1_PEA	No assigned EC number	0.6438	0.9655	0.9395	N/A	no
P68164	FER_DATME	No assigned EC number	0.7187	0.6620	0.9896	N/A	no
P68163	FER_DATIN	No assigned EC number	0.7187	0.6620	0.9896	N/A	no
P68165	FER_DATST	No assigned EC number	0.7187	0.6620	0.9896	N/A	no
P84873	FER1_HYONI	No assigned EC number	0.7187	0.6620	0.9896	N/A	no
P16972	FER2_ARATH	No assigned EC number	0.7272	0.9793	0.9594	yes	no
P83523	FER_LYCCN	No assigned EC number	0.7187	0.6620	0.9896	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
PLN03136	148	PLN03136, PLN03136, Ferredoxin; Provisional	2e-70
TIGR02008	97	TIGR02008, fdx_plant, ferredoxin [2Fe-2S]	2e-59
CHL00134	99	CHL00134, petF, ferredoxin; Validated	4e-54
PTZ00038	191	PTZ00038, PTZ00038, ferredoxin; Provisional	6e-54
cd00207	84	cd00207, fer2, 2Fe-2S iron-sulfur cluster binding	3e-35
COG0633	102	COG0633, Fdx, Ferredoxin [Energy production and co	2e-25
PRK07609	339	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucosee	7e-25
pfam00111	77	pfam00111, Fer2, 2Fe-2S iron-sulfur cluster bindin	3e-24
TIGR02160	352	TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenas	3e-19
PRK05713	312	PRK05713, PRK05713, hypothetical protein; Provisio	2e-12
PRK10684	332	PRK10684, PRK10684, HCP oxidoreductase, NADH-depen	7e-10
PRK10713	84	PRK10713, PRK10713, 2Fe-2S ferredoxin YfaE; Provis	2e-06
PRK11872	340	PRK11872, antC, anthranilate dioxygenase reductase	3e-06
PRK08166	791	PRK08166, PRK08166, NADH dehydrogenase subunit G;	2e-05
COG1034	693	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone	2e-05
TIGR02007	110	TIGR02007, fdx_isc, ferredoxin, 2Fe-2S type, ISC s	2e-04
PRK06259	486	PRK06259, PRK06259, succinate dehydrogenase/fumara	0.002

>gnl|CDD|178681 PLN03136, PLN03136, Ferredoxin; Provisional

 Score =  208 bits (529), Expect = 2e-70
 Identities = 104/143 (72%), Positives = 125/143 (87%), Gaps = 1/143 (0%)

Query: 3   ALSSAMVSTSFIRNKPTVTSLKAMPNMG-QALFGLKANNNRGGRVIAMATYKVKLITPEG 61
           ALSSA+VSTSF+R + T  SL+++P+   Q+LFGLK++  RGGRV AMATYKVK ITPEG
Sbjct: 5   ALSSAIVSTSFLRRQQTPISLRSLPSANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG 64

Query: 62  EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAG 121
           EQE+EC +D Y+LDAAE+AGIDLPYSCRAGSCS+CAGKVVSGS+DQSD SFL+D+QI  G
Sbjct: 65  EQEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEG 124

Query: 122 YVLTCVAYPTSDVTVETHKDEEM 144
           YVLTCVAYPTSDV +ETHK+E +
Sbjct: 125 YVLTCVAYPTSDVVIETHKEEAI 147

Length = 148

>gnl|CDD|233684 TIGR02008, fdx_plant, ferredoxin [2Fe-2S]

 Score =  178 bits (454), Expect = 2e-59
 Identities = 74/96 (77%), Positives = 87/96 (90%), Gaps = 1/96 (1%)

Query: 50  ATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQS 108
           ATYKV L+ P+G E+ IECPDD YILDAAE+AGIDLPYSCRAG+CSTCAGKV  G+VDQS
Sbjct: 1   ATYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQS 60

Query: 109 DGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           D SFL+DDQ++AGYVLTCVAYPTSD T+ETHK+E++
Sbjct: 61  DQSFLDDDQMEAGYVLTCVAYPTSDCTIETHKEEDL 96

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins. Length = 97

>gnl|CDD|177056 CHL00134, petF, ferredoxin; Validated

 Score =  165 bits (419), Expect = 4e-54
 Identities = 70/98 (71%), Positives = 85/98 (86%), Gaps = 2/98 (2%)

Query: 49  MATYKVKLIT-PEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVD 106
           MATYKV L++  EG +  I+CPDD YILDAAE+ GIDLPYSCRAG+CSTCAGKV  G+VD
Sbjct: 1   MATYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVD 60

Query: 107 QSDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           QSD SFL+DDQ++AG+VLTCVAYPTSD T+ TH++EE+
Sbjct: 61  QSDQSFLDDDQLEAGFVLTCVAYPTSDCTILTHQEEEL 98

Length = 99

>gnl|CDD|240237 PTZ00038, PTZ00038, ferredoxin; Provisional

 Score =  168 bits (426), Expect = 6e-54
 Identities = 54/93 (58%), Positives = 70/93 (75%)

Query: 52  YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGS 111
           Y + L TP+GE+ IEC +D YILDAAE  G++LPYSCR GSCSTCA K++ G VD  D S
Sbjct: 96  YNITLQTPDGEKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQS 155

Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           +L+D+Q+  GY L C  YP SD T+ETHK++E+
Sbjct: 156 YLDDEQLKKGYCLLCTCYPKSDCTIETHKEDEL 188

Length = 191

>gnl|CDD|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain

 Score =  117 bits (294), Expect = 3e-35
 Identities = 40/84 (47%), Positives = 55/84 (65%)

Query: 54  VKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFL 113
           V +  P    E+E P+   +LDAA +AGID+PYSCRAG+C TC  +VV G VDQSD S L
Sbjct: 1   VTINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLL 60

Query: 114 EDDQIDAGYVLTCVAYPTSDVTVE 137
           ++++ + GYVL C    T  + +E
Sbjct: 61  DEEEAEGGYVLACQTRVTDGLVIE 84

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin. Length = 84

>gnl|CDD|223706 COG0633, Fdx, Ferredoxin [Energy production and conversion]

 Score = 92.5 bits (230), Expect = 2e-25
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 51  TYKVKLITPEGEQ--EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSG--SVD 106
             K+  +T +GE        +   +L+AAE  GI + Y+CR G+C TC  KV+ G   V 
Sbjct: 1   MPKIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVS 60

Query: 107 QSDGS---FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
             + S    L+   ++    L+C      D+ +E  ++ E +
Sbjct: 61  PPEESEEDLLDAAGLEGNSRLSCQCRVKGDLDIEVVEEPEYT 102

Length = 102

>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

 Score = 96.9 bits (242), Expect = 7e-25
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 4/90 (4%)

Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSD 109
            +++V L  P G ++     D  ILDAA   GI LPY C+ G+C +C G+++ G V+Q  
Sbjct: 1   MSFQVTL-QPSG-RQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGP 58

Query: 110 G--SFLEDDQIDAGYVLTCVAYPTSDVTVE 137
              S L  ++  AG  LTC A P SD+ +E
Sbjct: 59  HQASALSGEERAAGEALTCCAKPLSDLVLE 88

Length = 339

>gnl|CDD|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain

 Score = 88.7 bits (220), Expect = 3e-24
 Identities = 46/78 (58%), Positives = 54/78 (69%), Gaps = 4/78 (5%)

Query: 57  ITPEG-EQEIECPDDTY-ILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLE 114
           +T +G    IE PD    +LDAAE+AGID+PYSCR G C TCA KV+ G V QSD SFLE
Sbjct: 1   VTIDGKGVTIEVPDGETTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEV-QSDQSFLE 59

Query: 115 DDQIDAGY-VLTCVAYPT 131
           DD++ AGY VL C  YP 
Sbjct: 60  DDELAAGYVVLACQTYPK 77

Length = 77

>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK subunit

 Score = 81.8 bits (202), Expect = 3e-19
 Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 57  ITPEGEQEIECP--DDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLE 114
           +T +G          D  +LDAA  A  DLP++C+ G C TC  KV+ G VD      LE
Sbjct: 267 VTLDGRSTETSSLSRDESVLDAALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALE 326

Query: 115 DDQIDAGYVLTCVAYP-TSDVTVE 137
            D++DAGYVLTC AYP +  + V+
Sbjct: 327 PDEVDAGYVLTCQAYPLSDKLVVD 350

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA [Energy metabolism, Other]. Length = 352

>gnl|CDD|235575 PRK05713, PRK05713, hypothetical protein; Provisional

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 59  PE---GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLED 115
           PE   GE+    P  + +LDA   AG+ +PYSCRAGSC  C  + + G  + +    L  
Sbjct: 2   PELRVGERRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAA 61

Query: 116 DQIDAGYVLTCVAYPTSDVTVET 138
           ++ + G+ L C      D+ VE 
Sbjct: 62  EKREQGWRLACQCRVVGDLRVEV 84

Length = 312

>gnl|CDD|236735 PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional

 Score = 55.5 bits (134), Expect = 7e-10
 Identities = 30/92 (32%), Positives = 42/92 (45%)

Query: 46  VIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSV 105
           V   AT  +     +  +E   P  T +L+A E   + +  +CRAG C  C  KVVSG  
Sbjct: 241 VAEAATSGLTFTKLQPAREFYAPVGTTLLEALESNKVPVVAACRAGVCGCCKTKVVSGEY 300

Query: 106 DQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVE 137
             S    L   +I  GYVL C  +P  D+ + 
Sbjct: 301 TVSSTMTLTPAEIAQGYVLACSCHPQGDLVLA 332

Length = 332

>gnl|CDD|182668 PRK10713, PRK10713, 2Fe-2S ferredoxin YfaE; Provisional

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 64  EIECPDD-TYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVD--QSDGSFLEDDQIDA 120
           ++ C D+   +L A E   + + Y CR G C +C  ++V+G VD      +F++  +I  
Sbjct: 12  QLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEI-- 69

Query: 121 GYVLTCVAYPTSDVTVE 137
              L C      D+ +E
Sbjct: 70  ---LPCCCRAKGDIEIE 83

Length = 84

>gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 70  DTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQS--DGSFLEDDQIDAGYVLTCV 127
           D  +LDAA   GI+LP  CR G C TC G+  SG   Q   D   L +  +    +L C 
Sbjct: 22  DELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQ 81

Query: 128 AYPTSDVT 135
               SD  
Sbjct: 82  TRVKSDAA 89

Length = 340

>gnl|CDD|236170 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 49  MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSC------RAGSCSTCAGKVVS 102
           MAT     I  +G +E E      +L+A    GID+PY C        G+C  CA K   
Sbjct: 1   MAT-----IHVDG-KEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQ 54

Query: 103 GSVD 106
              D
Sbjct: 55  NPED 58

Length = 791

>gnl|CDD|223965 COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 63  QEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKV 100
           +EIE P+   +L AA +AGID+P  C       AG+C  C  +V
Sbjct: 9   KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEV 52

Length = 693

>gnl|CDD|131062 TIGR02007, fdx_isc, ferredoxin, 2Fe-2S type, ISC system

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 55  KLITPEGEQEIECPDDTYILDAAEDAGIDLPYSC-RAGSCSTCAGKVVSGSVDQSDGSFL 113
           + + PEG   +E      ILD A D GI++ ++C ++ +C+TC   V  G     + S  
Sbjct: 9   EDLCPEG-AVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQ 67

Query: 114 EDDQIDAGY------VLTCVAYPTS-DVTVETHK 140
           E+D +D  +       L+C A     D+ VE  K
Sbjct: 68  EEDMLDKAWGLEPDSRLSCQAVVADEDLVVEIPK 101

This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 110

>gnl|CDD|235756 PRK06259, PRK06259, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 14/66 (21%)

Query: 49  MATYKVKLITPEGEQ--------EIECPDDTYILDAAE------DAGIDLPYSCRAGSCS 94
           M    + +   + E+        E+   +   +LDA E      DA I    SCRAG C 
Sbjct: 1   MKMITITVKRFDPEKDEPHFESYEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCG 60

Query: 95  TCAGKV 100
           +CA  +
Sbjct: 61  SCAVTI 66

Length = 486

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
PLN03136	148	Ferredoxin; Provisional	100.0
CHL00134	99	petF ferredoxin; Validated	99.95
TIGR02008	97	fdx_plant ferredoxin [2Fe-2S]. This model represen	99.94
PTZ00038	191	ferredoxin; Provisional	99.93
PRK10713	84	2Fe-2S ferredoxin YfaE; Provisional	99.89
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	99.87
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.86
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.84
cd00207	84	fer2 2Fe-2S iron-sulfur cluster binding domain. Ir	99.83
COG0633	102	Fdx Ferredoxin [Energy production and conversion]	99.82
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	99.82
PLN02593	117	adrenodoxin-like ferredoxin protein	99.81
PRK05713	312	hypothetical protein; Provisional	99.81
TIGR02007	110	fdx_isc ferredoxin, 2Fe-2S type, ISC system. This	99.8
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.79
PTZ00490	143	Ferredoxin superfamily; Provisional	99.78
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	99.74
PF00111	78	Fer2: 2Fe-2S iron-sulfur cluster binding domain; I	99.74
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.66
COG3894	614	Uncharacterized metal-binding protein [General fun	99.52
PRK07569	234	bidirectional hydrogenase complex protein HoxU; Va	99.22
KOG3309	159	consensus Ferredoxin [Energy production and conver	99.17
PF13510	82	Fer2_4: 2Fe-2S iron-sulfur cluster binding domain;	99.15
PRK08166	847	NADH dehydrogenase subunit G; Validated	99.04
PRK06259	486	succinate dehydrogenase/fumarate reductase iron-su	98.82
PTZ00305	297	NADH:ubiquinone oxidoreductase; Provisional	98.67
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.62
PRK09130	687	NADH dehydrogenase subunit G; Validated	98.54
COG1034	693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	98.52
TIGR01973	603	NuoG NADH-quinone oxidoreductase, chain G. This mo	98.43
PRK09129	776	NADH dehydrogenase subunit G; Validated	98.36
PRK08493	819	NADH dehydrogenase subunit G; Validated	98.36
PRK13552	239	frdB fumarate reductase iron-sulfur subunit; Provi	98.31
PF13085	110	Fer2_3: 2Fe-2S iron-sulfur cluster binding domain;	98.3
PRK07860	797	NADH dehydrogenase subunit G; Validated	98.3
PRK08640	249	sdhB succinate dehydrogenase iron-sulfur subunit;	98.27
PRK11433	217	aldehyde oxidoreductase 2Fe-2S subunit; Provisiona	98.2
PRK12577	329	succinate dehydrogenase iron-sulfur subunit; Provi	98.19
PRK12386	251	fumarate reductase iron-sulfur subunit; Provisiona	98.17
PRK12385	244	fumarate reductase iron-sulfur subunit; Provisiona	98.12
PRK07570	250	succinate dehydrogenase/fumarate reductase iron-su	98.12
PRK09908	159	xanthine dehydrogenase subunit XdhC; Provisional	98.1
COG3383	978	Uncharacterized anaerobic dehydrogenase [General f	97.97
PRK12576	279	succinate dehydrogenase iron-sulfur subunit; Provi	97.96
TIGR00384	220	dhsB succinate dehydrogenase and fumarate reductas	97.93
PRK12575	235	succinate dehydrogenase iron-sulfur subunit; Provi	97.93
PLN00129	276	succinate dehydrogenase [ubiquinone] iron-sulfur s	97.91
TIGR03193	148	4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamm	97.87
COG0479	234	FrdB Succinate dehydrogenase/fumarate reductase, F	97.84
PRK05950	232	sdhB succinate dehydrogenase iron-sulfur subunit;	97.72
TIGR03198	151	pucE xanthine dehydrogenase E subunit. This gene h	97.51
COG2080	156	CoxS Aerobic-type carbon monoxide dehydrogenase, s	97.48
TIGR02963	467	xanthine_xdhA xanthine dehydrogenase, small subuni	96.94
PRK09800	956	putative hypoxanthine oxidase; Provisional	96.83
TIGR03311	848	Se_dep_Molyb_1 selenium-dependent molybdenum hydro	96.68
TIGR03313	951	Se_sel_red_Mo probable selenate reductase, molybde	96.28
PLN00192	1344	aldehyde oxidase	96.25
TIGR02969	1330	mam_aldehyde_ox aldehyde oxidase. Members of this	95.86
KOG2282	708	consensus NADH-ubiquinone oxidoreductase, NDUFS1/7	95.79
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	94.54
KOG3049	288	consensus Succinate dehydrogenase, Fe-S protein su	92.9
COG4630	493	XdhA Xanthine dehydrogenase, iron-sulfur cluster a	92.41
PLN02906	1319	xanthine dehydrogenase	90.47
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	88.68
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	88.09
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	87.49
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	87.18
PRK08364	70	sulfur carrier protein ThiS; Provisional	84.86
KOG0430	1257	consensus Xanthine dehydrogenase [Nucleotide trans	84.72
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	84.07
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	81.79
PF10418	40	DHODB_Fe-S_bind: Iron-sulfur cluster binding domai	80.86

>PLN03136 Ferredoxin; Provisional

Probab=100.00  E-value=2.3e-32  Score=203.51  Aligned_cols=145  Identities=72%  Similarity=1.163  Sum_probs=125.3

Q ss_pred             Cccc--ccCccccceeccCCccccccCCCCce-eeeeccccCCCCCCcccceeeeEEEEECCCCeEEEEecCCCcHHHHH
Q 032230            1 MAAL--SSAMVSTSFIRNKPTVTSLKAMPNMG-QALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAA   77 (145)
Q Consensus         1 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~F~~~~~~~~~~~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal   77 (145)
                      ||+.  ++++.+++|...++++++++++.+.- .-+||.+....++|+++.|..++|+|..+++.++|++++|++|||++
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~V~l~~~~~~~~~~~~~g~tILdAa   80 (148)
T PLN03136          1 MASTALSSAIVSTSFLRRQQTPISLRSLPSANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAA   80 (148)
T ss_pred             CcchhhhhhhhhhhcccccccccccccccccccccccccccccccCcccceeeeEEEEEecCCCcEEEEeCCCCcHHHHH
Confidence            5555  66667777887777788887775443 66889887545567888899999999756665789999999999999


Q ss_pred             HHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCCeEEEeCCCCCCC
Q 032230           78 EDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS  145 (145)
Q Consensus        78 ~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~~~~e~~l~  145 (145)
                      +++||++||+|+.|.||+|++++++|.+++.+...|++++.++||+|+||+++.+|++|++++|++|.
T Consensus        81 ~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC~a~p~sD~~Ie~~~e~~l~  148 (148)
T PLN03136         81 EEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEEAIM  148 (148)
T ss_pred             HHcCCCCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEeEeEECCCcEEecCChhhcC
Confidence            99999999999999999999999999999887778999999999999999999999999999999874

>CHL00134 petF ferredoxin; Validated

Probab=99.95  E-value=7.8e-27  Score=163.17  Aligned_cols=97  Identities=70%  Similarity=1.196  Sum_probs=87.6

Q ss_pred             eeeeEEEEEC--CCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeE
Q 032230           49 MATYKVKLIT--PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTC  126 (145)
Q Consensus        49 m~~~~Vti~~--~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaC  126 (145)
                      |+.|+|+|..  .+..+.|++++|+|||++|+++||++||+|+.|.||+|++++++|.+++.+...|+.++.++||+|+|
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C   80 (99)
T CHL00134          1 MATYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTC   80 (99)
T ss_pred             CCeEEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEe
Confidence            5668999953  23356799999999999999999999999999999999999999999887666789888999999999


Q ss_pred             EeEECCCeEEEeCCCCCCC
Q 032230          127 VAYPTSDVTVETHKDEEMS  145 (145)
Q Consensus       127 q~~~~~dl~I~~~~e~~l~  145 (145)
                      |++|.+|++|++++++++|
T Consensus        81 ~~~~~~d~~i~~~~~~~~~   99 (99)
T CHL00134         81 VAYPTSDCTILTHQEEELY   99 (99)
T ss_pred             eCEECCCeEEEeccccccC
Confidence            9999999999999999987

>TIGR02008 fdx_plant ferredoxin [2Fe-2S]

Probab=99.94  E-value=1.9e-26  Score=160.53  Aligned_cols=95  Identities=77%  Similarity=1.329  Sum_probs=86.0

Q ss_pred             eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeE
Q 032230           51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAY  129 (145)
Q Consensus        51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~  129 (145)
                      .++|+|..+++ .++|.+++|+||||+++++|+++|++|++|.||+|+++|++|.+++.+...|+++++++||+|+||++
T Consensus         2 ~~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~   81 (97)
T TIGR02008         2 TYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAY   81 (97)
T ss_pred             eEEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCE
Confidence            46788853443 57899999999999999999999999999999999999999999887666788888999999999999


Q ss_pred             ECCCeEEEeCCCCCCC
Q 032230          130 PTSDVTVETHKDEEMS  145 (145)
Q Consensus       130 ~~~dl~I~~~~e~~l~  145 (145)
                      +.+|++|++++++++|
T Consensus        82 ~~~di~v~~~~~~~~~   97 (97)
T TIGR02008        82 PTSDCTIETHKEEDLY   97 (97)
T ss_pred             ECCCeEEEeccccccC
Confidence            9999999999999987

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.

>PTZ00038 ferredoxin; Provisional

Probab=99.93  E-value=1.7e-25  Score=172.47  Aligned_cols=97  Identities=56%  Similarity=1.072  Sum_probs=88.9

Q ss_pred             eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEe
Q 032230           49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVA  128 (145)
Q Consensus        49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~  128 (145)
                      +..|+|+|..+++.+++++++|+||||+++++||++|+.|+.|.||+|++++++|++++.+...|+++++++||+|+||+
T Consensus        93 ~~~~~Vt~~~~~g~~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa  172 (191)
T PTZ00038         93 PLFYNITLQTPDGEKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTC  172 (191)
T ss_pred             CceEEEEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeC
Confidence            34688998645556789999999999999999999999999999999999999999998888889999999999999999


Q ss_pred             EECCCeEEEeCCCCCCC
Q 032230          129 YPTSDVTVETHKDEEMS  145 (145)
Q Consensus       129 ~~~~dl~I~~~~e~~l~  145 (145)
                      ++.+|++|+++++++++
T Consensus       173 ~p~sDi~Ie~p~e~~~~  189 (191)
T PTZ00038        173 YPKSDCTIETHKEDELH  189 (191)
T ss_pred             EECCCeEEecCChHHhc
Confidence            99999999999998764

>PRK10713 2Fe-2S ferredoxin YfaE; Provisional

Probab=99.89  E-value=7.7e-23  Score=138.94  Aligned_cols=83  Identities=29%  Similarity=0.586  Sum_probs=69.9

Q ss_pred             eeEEEEECCCCeEEEEecC-CCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeE
Q 032230           51 TYKVKLITPEGEQEIECPD-DTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAY  129 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~-g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~  129 (145)
                      |++|+|. +.+ +.|++.+ ++|||++++++|+++||+|+.|.||+|++++++|++++.+..   ..+.++|++|+||++
T Consensus         1 ~~~v~~~-~~~-~~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~~~   75 (84)
T PRK10713          1 MARVTLR-ITG-TQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCCCR   75 (84)
T ss_pred             CCEEEEE-eCC-cEEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEeeCE
Confidence            3567775 343 6799986 599999999999999999999999999999999999875432   235678999999999


Q ss_pred             ECCCeEEEe
Q 032230          130 PTSDVTVET  138 (145)
Q Consensus       130 ~~~dl~I~~  138 (145)
                      |.+|++|++
T Consensus        76 p~sd~~ie~   84 (84)
T PRK10713         76 AKGDIEIEM   84 (84)
T ss_pred             ECCCEEEeC
Confidence            999999874

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=99.87  E-value=6e-22  Score=163.22  Aligned_cols=106  Identities=26%  Similarity=0.415  Sum_probs=89.9

Q ss_pred             cCCCCceeeeeccccCCCCCCcccceeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeC
Q 032230           24 KAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSG  103 (145)
Q Consensus        24 ~~~~~~~~e~F~~~~~~~~~~~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G  103 (145)
                      .+.++||.|.|++......      ...++|++..  .++++.+++|+|||++++++|+++|++|+.|.||+|++++++|
T Consensus       227 v~~~~i~~E~F~~~~~~~~------~~~~~v~~~~--~~~~~~~~~~~~lL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G  298 (332)
T PRK10684        227 VTADRFFKEKFFTPVAEAA------TSGLTFTKLQ--PAREFYAPVGTTLLEALESNKVPVVAACRAGVCGCCKTKVVSG  298 (332)
T ss_pred             CCHHHeEeeccCCCCCCcC------CCceEEEEec--CCEEEEeCCCChHHHHHHHcCCCccCCCCCcCCCCCEEEEecC
Confidence            4568999999987532111      2246788864  3468999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCChhcccCCeEEeEEeEECCCeEEE
Q 032230          104 SVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVE  137 (145)
Q Consensus       104 ~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~  137 (145)
                      .+++.....|+++++++|++|+||+++.+|++|+
T Consensus       299 ~v~~~~~~~l~~~~~~~g~~l~C~~~~~~d~~i~  332 (332)
T PRK10684        299 EYTVSSTMTLTPAEIAQGYVLACSCHPQGDLVLA  332 (332)
T ss_pred             cccccccccCCHHHHhCCcEEEeeCEECCCeEEC
Confidence            9998766779999999999999999999998873

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=99.86  E-value=3.1e-21  Score=159.70  Aligned_cols=115  Identities=37%  Similarity=0.553  Sum_probs=89.0

Q ss_pred             cCCCCceeeeeccccCCCCCCcc----cceeeeEEEEECCCCeEE-EEecCCCcHHHHHHHcCCCCCCCCCCccccCCeE
Q 032230           24 KAMPNMGQALFGLKANNNRGGRV----IAMATYKVKLITPEGEQE-IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAG   98 (145)
Q Consensus        24 ~~~~~~~~e~F~~~~~~~~~~~~----~~m~~~~Vti~~~~~~~~-~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v   98 (145)
                      .+..+||.|.|++..++...+..    .....++|+|...+...+ +.+++|+|||++++++|++++|+|+.|.||+|++
T Consensus       231 v~~~~i~~E~F~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~~G~Cg~C~~  310 (352)
T TIGR02160       231 VPAGRVHLELFYTDDEPGREVRHEVSGPEGDVSKVTVTLDGRSTETSSLSRDESVLDAALRARPDLPFACKGGVCGTCRA  310 (352)
T ss_pred             CCHHHEEEEeccCCCCCcccccccccccCCCceEEEEEECCceEEEEecCCCCcHHHHHHHcCCCCcCCCCCccCCCCEE
Confidence            45679999999974311100110    012346788764333332 5689999999999999999999999999999999


Q ss_pred             EEEeCCccCCCCCCCChhcccCCeEEeEEeEECCC-eEEEe
Q 032230           99 KVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSD-VTVET  138 (145)
Q Consensus        99 ~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d-l~I~~  138 (145)
                      ++++|.+++.+...|++++.++|++|+||+++.+| ++|++
T Consensus       311 ~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~~~~~~~~  351 (352)
T TIGR02160       311 KVLEGKVDMERNYALEPDEVDAGYVLTCQAYPLSDKLVVDY  351 (352)
T ss_pred             EEeccccccccccCCCHHHHhCCcEEEeeEEECCCcEEEec
Confidence            99999999877667898899999999999999987 77764

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=99.84  E-value=1.9e-20  Score=154.35  Aligned_cols=90  Identities=38%  Similarity=0.729  Sum_probs=80.9

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCC--CCCCCChhcccCCeEEeEEeE
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQS--DGSFLEDDQIDAGYVLTCVAY  129 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rLaCq~~  129 (145)
                      ++|+|. +. ++++++++|+||||+++++|++++++|+.|.||+|++++++|.+++.  +...|++++.++|++|+||++
T Consensus         3 ~~v~~~-~~-~~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~   80 (339)
T PRK07609          3 FQVTLQ-PS-GRQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAK   80 (339)
T ss_pred             EEEEEe-cC-CeEEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCE
Confidence            578886 34 46899999999999999999999999999999999999999999875  566788888999999999999


Q ss_pred             ECCCeEEEeCCCCC
Q 032230          130 PTSDVTVETHKDEE  143 (145)
Q Consensus       130 ~~~dl~I~~~~e~~  143 (145)
                      +.+|++|+++...+
T Consensus        81 ~~~d~~i~~~~~~~   94 (339)
T PRK07609         81 PLSDLVLEAREVPA   94 (339)
T ss_pred             ECCCEEEEeccccc
Confidence            99999999987654

>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain

Probab=99.83  E-value=4.1e-20  Score=123.54  Aligned_cols=77  Identities=49%  Similarity=0.931  Sum_probs=70.2

Q ss_pred             CeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCCeEEE
Q 032230           61 GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVE  137 (145)
Q Consensus        61 ~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~  137 (145)
                      .++++++++|+|||++++++|+++++.|+.|.||+|+++|.+|.+.+.....+...+..+++||+||+++.+|++|+
T Consensus         8 ~~~~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~i~v~   84 (84)
T cd00207           8 SGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVIE   84 (84)
T ss_pred             CCEEEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCCcEEC
Confidence            45789999999999999999999999999999999999999999988766667777788999999999999999874

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.

>COG0633 Fdx Ferredoxin [Energy production and conversion]

Probab=99.82  E-value=3.4e-20  Score=130.33  Aligned_cols=83  Identities=28%  Similarity=0.585  Sum_probs=66.2

Q ss_pred             eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeC--CccCCC---CCCCChhcccCCeEEeEEeEECCCeEE
Q 032230           62 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSG--SVDQSD---GSFLEDDQIDAGYVLTCVAYPTSDVTV  136 (145)
Q Consensus        62 ~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G--~~~~~e---~~~L~~~~~~~g~rLaCq~~~~~dl~I  136 (145)
                      ...+.++.|+|||++++++||+++|+|+.|.||+|+|+|++|  .+.+.+   ..+|.+.....++||+||+++.+|+.|
T Consensus        14 ~~~~~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~~~d~~i   93 (102)
T COG0633          14 DVTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRVKGDLDI   93 (102)
T ss_pred             ceEEeccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEECCCcce
Confidence            344555669999999999999999999999999999999999  665542   234544456677999999999999988


Q ss_pred             EeCCCCCC
Q 032230          137 ETHKDEEM  144 (145)
Q Consensus       137 ~~~~e~~l  144 (145)
                      ++....+.
T Consensus        94 ~~~~~~~~  101 (102)
T COG0633          94 EVVEEPEY  101 (102)
T ss_pred             EEEeccCC
Confidence            76655443

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=99.82  E-value=9.7e-20  Score=150.85  Aligned_cols=91  Identities=33%  Similarity=0.513  Sum_probs=76.7

Q ss_pred             eEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccC--CCCCCCChhcccCCeEEeEEe
Q 032230           52 YKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ--SDGSFLEDDQIDAGYVLTCVA  128 (145)
Q Consensus        52 ~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~--~e~~~L~~~~~~~g~rLaCq~  128 (145)
                      ++|+|..+++ ...|++++|+||||+++++|+.+|++|+.|.||+|++++++|.++.  .+...|++++.++|++|+||+
T Consensus         3 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~   82 (340)
T PRK11872          3 HKVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQT   82 (340)
T ss_pred             eEEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeC
Confidence            4555531223 4568899999999999999999999999999999999999999875  345568888889999999999


Q ss_pred             EECCCeEEEeCCCC
Q 032230          129 YPTSDVTVETHKDE  142 (145)
Q Consensus       129 ~~~~dl~I~~~~e~  142 (145)
                      ++.+|++|+++.+.
T Consensus        83 ~~~~d~~i~~~~~~   96 (340)
T PRK11872         83 RVKSDAAFYFDFDS   96 (340)
T ss_pred             EECCceEEEecCcc
Confidence            99999999987654

>PLN02593 adrenodoxin-like ferredoxin protein

Probab=99.81  E-value=7.7e-20  Score=131.45  Aligned_cols=91  Identities=21%  Similarity=0.398  Sum_probs=73.1

Q ss_pred             eEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCcc-------CCCCCCCC-hhcccCC
Q 032230           52 YKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVD-------QSDGSFLE-DDQIDAG  121 (145)
Q Consensus        52 ~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~-------~~e~~~L~-~~~~~~g  121 (145)
                      ++|+|..++| .+++.+..|+|||++++++|+++++.|+ .|.||+|+|+|+++...       ..|...|+ ..+..++
T Consensus         1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~   80 (117)
T PLN02593          1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET   80 (117)
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence            3688865665 5789999999999999999999999999 79999999999654321       12344566 4567789


Q ss_pred             eEEeEEeEEC---CCeEEEeCCCC
Q 032230          122 YVLTCVAYPT---SDVTVETHKDE  142 (145)
Q Consensus       122 ~rLaCq~~~~---~dl~I~~~~e~  142 (145)
                      +||+||+.+.   .+++|++++++
T Consensus        81 sRLaCQ~~v~~~~~~~~v~ip~~~  104 (117)
T PLN02593         81 SRLGCQVIAKPELDGMRLALPAAT  104 (117)
T ss_pred             eEecceeEeecCCCCEEEEcCchh
Confidence            9999999998   46999998765

>PRK05713 hypothetical protein; Provisional

Probab=99.81  E-value=1.3e-19  Score=148.31  Aligned_cols=77  Identities=31%  Similarity=0.637  Sum_probs=71.9

Q ss_pred             EEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCCeEEEeC
Q 032230           63 QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVETH  139 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~~~  139 (145)
                      ++|++++|+||||+++++||.+|++|+.|.||+|++++++|.++......|++++.++|+||+||+++.+|++|+++
T Consensus         9 ~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~   85 (312)
T PRK05713          9 RRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVEVF   85 (312)
T ss_pred             eEEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCceEEEec
Confidence            68999999999999999999999999999999999999999987655567888889999999999999999999986

>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system

Probab=99.80  E-value=2.8e-19  Score=127.10  Aligned_cols=83  Identities=29%  Similarity=0.485  Sum_probs=67.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCCCC-----CCCChh-cccCCeEEeEEeEEC
Q 032230           59 PEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQSDG-----SFLEDD-QIDAGYVLTCVAYPT  131 (145)
Q Consensus        59 ~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~-----~~L~~~-~~~~g~rLaCq~~~~  131 (145)
                      +. +++|++.+|+|||++++++|+++++.|+ .|.||+|+|+|.+|.......     ..|+.. +..++|||+||+++.
T Consensus        13 p~-~~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~~~   91 (110)
T TIGR02007        13 PE-GAVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAVVA   91 (110)
T ss_pred             CC-CeEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEEEc
Confidence            44 4689999999999999999999999999 799999999999997544322     223221 346789999999988


Q ss_pred             -CCeEEEeCCCC
Q 032230          132 -SDVTVETHKDE  142 (145)
Q Consensus       132 -~dl~I~~~~e~  142 (145)
                       +|++|+++..+
T Consensus        92 ~~dl~v~~~~~~  103 (110)
T TIGR02007        92 DEDLVVEIPKYT  103 (110)
T ss_pred             CCCEEEEECchh
Confidence             59999998654

This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=99.79  E-value=3.3e-19  Score=150.84  Aligned_cols=92  Identities=21%  Similarity=0.449  Sum_probs=79.3

Q ss_pred             eeeeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCC--CCCCCChhcccCCeEE
Q 032230           49 MATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQS--DGSFLEDDQIDAGYVL  124 (145)
Q Consensus        49 m~~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rL  124 (145)
                      |.+++|++..+++ ++++++++|+|||++++++|+++++.|+ .|.||+|+|++++|.+...  +...|++++.++|+||
T Consensus        27 ~~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rL  106 (405)
T TIGR01941        27 VSSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRL  106 (405)
T ss_pred             cccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEE
Confidence            5666777664443 5789999999999999999999999999 6999999999999987643  4467888889999999


Q ss_pred             eEEeEECCCeEEEeCC
Q 032230          125 TCVAYPTSDVTVETHK  140 (145)
Q Consensus       125 aCq~~~~~dl~I~~~~  140 (145)
                      +||+.+.+|++|+++.
T Consensus       107 aCq~~~~~d~~i~~~~  122 (405)
T TIGR01941       107 SCQVKVKQDMSIEIPE  122 (405)
T ss_pred             EeeCEECCCEEEEECc
Confidence            9999999999999874

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PTZ00490 Ferredoxin superfamily; Provisional

Probab=99.78  E-value=8.4e-19  Score=129.99  Aligned_cols=92  Identities=21%  Similarity=0.346  Sum_probs=76.7

Q ss_pred             eeEEEEECCCC-eEEEEecCCCcHHHHHHHc-CCCCCCCCC-CccccCCeEEEEeCCccC------CCCCCCChh-cccC
Q 032230           51 TYKVKLITPEG-EQEIECPDDTYILDAAEDA-GIDLPYSCR-AGSCSTCAGKVVSGSVDQ------SDGSFLEDD-QIDA  120 (145)
Q Consensus        51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~-Gi~i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~~-~~~~  120 (145)
                      .++|+|+.++| .+++++++|+|||+++.++ ++.|+..|+ .|.||+|+|+|.+|..+.      .|...|+.. +..+
T Consensus        35 ~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~~  114 (143)
T PTZ00490         35 KVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKE  114 (143)
T ss_pred             cEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCCC
Confidence            47899987666 5789999999999999995 799999999 999999999999875332      244567765 6789


Q ss_pred             CeEEeEEeEECC---CeEEEeCCCC
Q 032230          121 GYVLTCVAYPTS---DVTVETHKDE  142 (145)
Q Consensus       121 g~rLaCq~~~~~---dl~I~~~~e~  142 (145)
                      ++||+||..+..   +++|++++++
T Consensus       115 gsRLaCQi~v~~~ldgl~V~vp~~~  139 (143)
T PTZ00490        115 TSRLACQVDLTPEMDGLEVELPSYV  139 (143)
T ss_pred             CcEEeeeEEEecCCCCEEEEeCccc
Confidence            999999999985   5699998764

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=99.74  E-value=7.1e-18  Score=142.87  Aligned_cols=89  Identities=27%  Similarity=0.464  Sum_probs=75.9

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCC--CCCCCChhcccCCeEEeEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQS--DGSFLEDDQIDAGYVLTCV  127 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rLaCq  127 (145)
                      .++|++. ++..+++++++|+||||+++++|+++++.|+ +|.||+|+|++++|.+...  +...|++++.++|+||+||
T Consensus        35 ~~~i~~~-~~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq  113 (409)
T PRK05464         35 DVTIKIN-GDPEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQ  113 (409)
T ss_pred             cEEEEEc-CCCcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEee
Confidence            3566663 2224789999999999999999999999999 6999999999999987653  4556888888999999999


Q ss_pred             eEECCCeEEEeCC
Q 032230          128 AYPTSDVTVETHK  140 (145)
Q Consensus       128 ~~~~~dl~I~~~~  140 (145)
                      +++.+|++|+++.
T Consensus       114 ~~~~~d~~ie~~~  126 (409)
T PRK05464        114 VKVKQDMKIEVPE  126 (409)
T ss_pred             CEECCCEEEEECc
Confidence            9999999999874

>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions

Probab=99.74  E-value=3.8e-18  Score=113.14  Aligned_cols=69  Identities=43%  Similarity=0.801  Sum_probs=59.4

Q ss_pred             eEEEEecCCCc-HHHHHHHc-CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCe-EEeEEeEEC
Q 032230           62 EQEIECPDDTY-ILDAAEDA-GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGY-VLTCVAYPT  131 (145)
Q Consensus        62 ~~~~~v~~g~t-LLeal~~~-Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~-rLaCq~~~~  131 (145)
                      .++|++++|+| ||++++++ |++++|.|+.|.||+|+|+|++|++ +.....++.++..+++ ||+||++|+
T Consensus         7 ~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~~t   78 (78)
T PF00111_consen    7 GVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTRVT   78 (78)
T ss_dssp             EEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred             EEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEEeC
Confidence            57899999999 99999999 9999999998889999999999999 4345566666666665 799999874

Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.66  E-value=1.1e-16  Score=130.33  Aligned_cols=90  Identities=22%  Similarity=0.449  Sum_probs=78.8

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccC--CCCCCCChhcccCCeEEeEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQ--SDGSFLEDDQIDAGYVLTCV  127 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~--~e~~~L~~~~~~~g~rLaCq  127 (145)
                      ..+|+|+ .+.++++.++.|.+||.+|..+||.|++.|| .|.||.|+|+|.+|.-+.  .|...++.++.++||||+||
T Consensus        36 d~ti~IN-~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsCQ  114 (410)
T COG2871          36 DITIKIN-GDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSCQ  114 (410)
T ss_pred             ceEEEeC-CChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEEE
Confidence            3677775 3346789999999999999999999999999 999999999999987654  35667888899999999999


Q ss_pred             eEECCCeEEEeCCC
Q 032230          128 AYPTSDVTVETHKD  141 (145)
Q Consensus       128 ~~~~~dl~I~~~~e  141 (145)
                      +.+..|+.|+++++
T Consensus       115 ~~Vk~dm~levpEe  128 (410)
T COG2871         115 VNVKHDMDLEVPEE  128 (410)
T ss_pred             ecccccceeechHH
Confidence            99999999999864

>COG3894 Uncharacterized metal-binding protein [General function prediction only]

Probab=99.52  E-value=8.6e-15  Score=125.89  Aligned_cols=90  Identities=27%  Similarity=0.425  Sum_probs=72.4

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP  130 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  130 (145)
                      +-|+|. |.|+ ..+ ++|+|||+++++.|+.|.+.|| .|+||+|+|.|.+|.....+...-..-.++.||||+||+++
T Consensus         2 p~v~f~-psgk-r~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v   78 (614)
T COG3894           2 PLVTFM-PSGK-RGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQV   78 (614)
T ss_pred             ceeEee-cCCC-cCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehhh
Confidence            568886 6664 466 9999999999999999999999 99999999999999854321111122224569999999999


Q ss_pred             CCCeEEEeCCCCCC
Q 032230          131 TSDVTVETHKDEEM  144 (145)
Q Consensus       131 ~~dl~I~~~~e~~l  144 (145)
                      .+|++|.+|++..|
T Consensus        79 ~gd~~i~ip~es~l   92 (614)
T COG3894          79 LGDLVIFIPPESRL   92 (614)
T ss_pred             cCceEEEcCchhhH
Confidence            99999999998754

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated

Probab=99.22  E-value=2.2e-11  Score=96.55  Aligned_cols=73  Identities=26%  Similarity=0.552  Sum_probs=61.5

Q ss_pred             eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCe
Q 032230           49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGY  122 (145)
Q Consensus        49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~  122 (145)
                      |++++|+|   +| ++|++++|+|||++++++|+.||+.|.      .|.|+.|+|+| +|.               .+.
T Consensus         1 m~~v~i~i---dg-~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~---------------~~~   60 (234)
T PRK07569          1 MSVKTLTI---DD-QLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS---------------NKL   60 (234)
T ss_pred             CceEEEEE---CC-EEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC---------------Ccc
Confidence            55677877   34 579999999999999999999999998      89999999998 331               245


Q ss_pred             EEeEEeEECCCeEEEeCCC
Q 032230          123 VLTCVAYPTSDVTVETHKD  141 (145)
Q Consensus       123 rLaCq~~~~~dl~I~~~~e  141 (145)
                      +.||++.+..+|+|.+..+
T Consensus        61 ~~aC~t~v~~Gm~v~t~~~   79 (234)
T PRK07569         61 LPACVTPVAEGMVVQTNTP   79 (234)
T ss_pred             ccCcCCCCCCCCEEEECCH
Confidence            6799999999999988754

>KOG3309 consensus Ferredoxin [Energy production and conversion]

Probab=99.17  E-value=6.8e-11  Score=87.99  Aligned_cols=91  Identities=24%  Similarity=0.395  Sum_probs=72.0

Q ss_pred             eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccC------CCCCCCCh-hcccCC
Q 032230           51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQ------SDGSFLED-DQIDAG  121 (145)
Q Consensus        51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~~~~g  121 (145)
                      .++|+|..++| ++.+....|+|||+++.++||.++..|. .-.|.+|+|.|..-..+.      .|..+|+. -.+.+.
T Consensus        43 ~i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~t  122 (159)
T KOG3309|consen   43 DIKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTET  122 (159)
T ss_pred             eEEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccc
Confidence            48999998887 6668889999999999999999999999 999999999997654332      23334432 225678


Q ss_pred             eEEeEEeEECCC---eEEEeCCC
Q 032230          122 YVLTCVAYPTSD---VTVETHKD  141 (145)
Q Consensus       122 ~rLaCq~~~~~d---l~I~~~~e  141 (145)
                      .||.||.....+   ++|.+|..
T Consensus       123 SRLGCQI~l~keldG~~v~vP~a  145 (159)
T KOG3309|consen  123 SRLGCQIVLTKELDGMRVAVPEA  145 (159)
T ss_pred             cccceEEEeccccCCcEEECccc
Confidence            999999998754   78888864

>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.15  E-value=5.4e-11  Score=80.39  Aligned_cols=69  Identities=33%  Similarity=0.582  Sum_probs=47.3

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCC----------ccccCCeEEEEeCCccCCCCCCCChhcccC
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRA----------GSCSTCAGKVVSGSVDQSDGSFLEDDQIDA  120 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~----------G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~  120 (145)
                      +++|+|   +| +++++.+|+|||++++++|+.||+.|..          |.|+.|.|+|- |                .
T Consensus         3 ~v~i~i---dG-~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g----------------~   61 (82)
T PF13510_consen    3 MVTITI---DG-KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-G----------------E   61 (82)
T ss_dssp             EEEEEE---TT-EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-S----------------E
T ss_pred             EEEEEE---CC-EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-C----------------C
Confidence            466777   34 6899999999999999999999999986          99999999982 1                1


Q ss_pred             CeEEeEEeEECCCeEEEeCC
Q 032230          121 GYVLTCVAYPTSDVTVETHK  140 (145)
Q Consensus       121 g~rLaCq~~~~~dl~I~~~~  140 (145)
                      ..+.||++.+..+|+|+...
T Consensus        62 ~~v~AC~t~v~~GM~V~T~s   81 (82)
T PF13510_consen   62 PNVRACSTPVEDGMVVETQS   81 (82)
T ss_dssp             EEEETTT-B--TTEEEE---
T ss_pred             cceEcccCCCcCCcEEEEeE
Confidence            23699999999999998653

>PRK08166 NADH dehydrogenase subunit G; Validated

Probab=99.04  E-value=3.7e-10  Score=103.56  Aligned_cols=75  Identities=27%  Similarity=0.546  Sum_probs=63.4

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEe
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLT  125 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa  125 (145)
                      .+|+|   +| +++++++|+|||++++++||.||+.|.      .|.|+.|+|+|.+|..+           ...+++++
T Consensus         2 ~~i~i---dg-~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~-----------~~~~~~~a   66 (847)
T PRK08166          2 ATIHV---DG-KEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPED-----------TRGRLVMS   66 (847)
T ss_pred             eEEEE---CC-EEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCcc-----------CCCCcccC
Confidence            56777   34 579999999999999999999999998      69999999999988431           23468899


Q ss_pred             EEeEECCCeEEEeCCC
Q 032230          126 CVAYPTSDVTVETHKD  141 (145)
Q Consensus       126 Cq~~~~~dl~I~~~~e  141 (145)
                      |++.+..+|+|++..+
T Consensus        67 C~~~v~~gm~v~t~~~   82 (847)
T PRK08166         67 CMTPATDGTFISIDDP   82 (847)
T ss_pred             cCCCCCCCCEEEeCCH
Confidence            9999999999988654

>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional

Probab=98.82  E-value=9.4e-09  Score=88.92  Aligned_cols=60  Identities=33%  Similarity=0.578  Sum_probs=50.6

Q ss_pred             EEEEecCCCcHHHHHHH------cCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCCeEE
Q 032230           63 QEIECPDDTYILDAAED------AGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTV  136 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~------~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I  136 (145)
                      .++++++|+||||+|++      .++.++++|+.|.||+|.+++ +|.                 .+|+|++.+.++++|
T Consensus        23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~~~~i   84 (486)
T PRK06259         23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE-----------------PVLACKTEVEDGMII   84 (486)
T ss_pred             EEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe-----------------EecccccCCCCCCEE
Confidence            45566799999999995      667789999999999999995 553                 478999999999999


Q ss_pred             EeCC
Q 032230          137 ETHK  140 (145)
Q Consensus       137 ~~~~  140 (145)
                      +...
T Consensus        85 ~~~~   88 (486)
T PRK06259         85 EPLD   88 (486)
T ss_pred             EecC
Confidence            8653

>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional

Probab=98.67  E-value=4.4e-08  Score=80.20  Aligned_cols=71  Identities=24%  Similarity=0.530  Sum_probs=58.1

Q ss_pred             eeEEEEECCCCeEEEEe-cCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeE
Q 032230           51 TYKVKLITPEGEQEIEC-PDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYV  123 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v-~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~r  123 (145)
                      ..+|+|   +| +++++ ++|+||||+++++||.||+-|.      .|.|+.|.|+| +|.               .+..
T Consensus        68 ~~~I~I---DG-k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~---------------~~lv  127 (297)
T PTZ00305         68 RAIMFV---NK-RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT---------------QNLV  127 (297)
T ss_pred             ceEEEE---CC-EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC---------------cCcc
Confidence            355555   34 68999 9999999999999999999998      38899999998 222               2456


Q ss_pred             EeEEeEECCCeEEEeCCC
Q 032230          124 LTCVAYPTSDVTVETHKD  141 (145)
Q Consensus       124 LaCq~~~~~dl~I~~~~e  141 (145)
                      -+|.+.+...|+|.+..+
T Consensus       128 ~AC~tpV~eGM~V~T~Se  145 (297)
T PTZ00305        128 VSCATVALPGMSIITDSR  145 (297)
T ss_pred             cccCCcCCCCCEEEeCCH
Confidence            799999999999998654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.62  E-value=7.1e-08  Score=86.45  Aligned_cols=73  Identities=30%  Similarity=0.589  Sum_probs=60.7

Q ss_pred             eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCe
Q 032230           49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGY  122 (145)
Q Consensus        49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~  122 (145)
                      |.+++|+|   +| +++++++|+|||++++++|+.||..|.      .|.|+.|.|+| +|.               .+.
T Consensus         1 ~~~v~~~i---dg-~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~---------------~~~   60 (652)
T PRK12814          1 MNTISLTI---NG-RSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK---------------NRF   60 (652)
T ss_pred             CCeEEEEE---CC-EEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC---------------cce
Confidence            44577887   34 689999999999999999999999997      69999999998 221               135


Q ss_pred             EEeEEeEECCCeEEEeCCC
Q 032230          123 VLTCVAYPTSDVTVETHKD  141 (145)
Q Consensus       123 rLaCq~~~~~dl~I~~~~e  141 (145)
                      .++|++.+..+|+|.+..+
T Consensus        61 ~~aC~t~~~~Gm~v~t~~~   79 (652)
T PRK12814         61 VPACSTAVSEGMVIETENA   79 (652)
T ss_pred             ecCcCCCCCCCCEEEeCcH
Confidence            7899999999999988654

>PRK09130 NADH dehydrogenase subunit G; Validated

Probab=98.54  E-value=1.4e-07  Score=85.22  Aligned_cols=71  Identities=34%  Similarity=0.595  Sum_probs=58.5

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEe
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLT  125 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa  125 (145)
                      ++|+|   +| +++++++|+|||++++++||.||+-|.      .|.|+.|.|+|..+.               ....-+
T Consensus         2 ~~~~I---dg-~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~---------------~~~~~s   62 (687)
T PRK09130          2 VKLKV---DG-KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGP---------------PKPVAS   62 (687)
T ss_pred             eEEEE---CC-EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCC---------------CCcccc
Confidence            57887   34 689999999999999999999999997      699999999984211               123568


Q ss_pred             EEeEECCCeEEEeCCC
Q 032230          126 CVAYPTSDVTVETHKD  141 (145)
Q Consensus       126 Cq~~~~~dl~I~~~~e  141 (145)
                      |.+.+...|+|.+..+
T Consensus        63 C~~~v~~gm~v~T~s~   78 (687)
T PRK09130         63 CAMPVGEGMVIFTNTP   78 (687)
T ss_pred             cCCCCCCCCEEEeCCH
Confidence            9999999999988654

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]

Probab=98.52  E-value=1.7e-07  Score=84.60  Aligned_cols=71  Identities=32%  Similarity=0.658  Sum_probs=58.3

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVL  124 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL  124 (145)
                      |.||+|   || +++++++|+|||++++++||+||+-|.      .|.|..|.|++..+.                ..+-
T Consensus         1 m~tI~I---DG-~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~----------------k~~~   60 (693)
T COG1034           1 MVTITI---DG-KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP----------------KLVA   60 (693)
T ss_pred             CeEEEE---CC-EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------cccc
Confidence            357887   34 689999999999999999999999997      399999999984322                3567


Q ss_pred             eEEeEECCCeEEEeCCC
Q 032230          125 TCVAYPTSDVTVETHKD  141 (145)
Q Consensus       125 aCq~~~~~dl~I~~~~e  141 (145)
                      +|.+.+..+++|.+..+
T Consensus        61 SC~tpv~dGM~I~T~s~   77 (693)
T COG1034          61 SCATPVTDGMVISTNSE   77 (693)
T ss_pred             ccccccCCCeEEecCCH
Confidence            89998888899887654

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G

Probab=98.43  E-value=3.2e-07  Score=81.46  Aligned_cols=64  Identities=31%  Similarity=0.552  Sum_probs=54.6

Q ss_pred             EEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCCeEE
Q 032230           63 QEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTV  136 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I  136 (145)
                      +++++++|+|||++++++||.||+-|.      .|.|..|.|+|. |..              ...+.+|.+.+..+|+|
T Consensus         6 ~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~-g~~--------------~~~~~aC~~~~~~gm~v   70 (603)
T TIGR01973         6 KELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVE-KFP--------------DKPVASCATPVTDGMKI   70 (603)
T ss_pred             EEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEEC-CCC--------------CCcccccCCCCCCCCEE
Confidence            689999999999999999999999997      799999999982 210              01478999999999999


Q ss_pred             EeCCC
Q 032230          137 ETHKD  141 (145)
Q Consensus       137 ~~~~e  141 (145)
                      .+..+
T Consensus        71 ~t~~~   75 (603)
T TIGR01973        71 STNSE   75 (603)
T ss_pred             EeCCH
Confidence            88654

This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.

>PRK09129 NADH dehydrogenase subunit G; Validated

Probab=98.36  E-value=6.2e-07  Score=81.72  Aligned_cols=70  Identities=26%  Similarity=0.572  Sum_probs=58.3

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEe
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLT  125 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa  125 (145)
                      ++|+|   || +++++++|+|||++++++|+.||+-|.      .|.|..|.|+| +|.               ...+.+
T Consensus         2 ~~~~i---dg-~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v-~~~---------------~~~~~a   61 (776)
T PRK09129          2 VEIEI---DG-KKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV-EKA---------------PKPLPA   61 (776)
T ss_pred             eEEEE---CC-EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE-CCC---------------CCcCcc
Confidence            57777   34 689999999999999999999999998      49999999998 221               124679


Q ss_pred             EEeEECCCeEEEeCCC
Q 032230          126 CVAYPTSDVTVETHKD  141 (145)
Q Consensus       126 Cq~~~~~dl~I~~~~e  141 (145)
                      |.+.+..+|+|.+..+
T Consensus        62 C~~~~~~gm~v~t~~~   77 (776)
T PRK09129         62 CATPVTDGMKVFTRSE   77 (776)
T ss_pred             cCCCCCCCCEEEcCCH
Confidence            9999999999988654

>PRK08493 NADH dehydrogenase subunit G; Validated

Probab=98.36  E-value=7.9e-07  Score=81.72  Aligned_cols=68  Identities=25%  Similarity=0.522  Sum_probs=56.7

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEe
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLT  125 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa  125 (145)
                      ++|+|   +| +++++++|+|||++++++|+.||+-|.      .|.|+.|.|+| +|.                 ..+|
T Consensus         2 v~i~I---dG-~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~-----------------~~~A   59 (819)
T PRK08493          2 ITITI---NG-KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK-----------------RVYS   59 (819)
T ss_pred             eEEEE---CC-EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-----------------Eecc
Confidence            57777   34 689999999999999999999998774      59999999998 221                 1679


Q ss_pred             EEeEECCCeEEEeCCC
Q 032230          126 CVAYPTSDVTVETHKD  141 (145)
Q Consensus       126 Cq~~~~~dl~I~~~~e  141 (145)
                      |++.+...|+|++..+
T Consensus        60 C~t~v~dGM~V~T~s~   75 (819)
T PRK08493         60 CNTKAKEGMNILTNTP   75 (819)
T ss_pred             ccCCCCCCCEEEecCH
Confidence            9999999999988654

>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional

Probab=98.31  E-value=7.6e-07  Score=71.14  Aligned_cols=57  Identities=23%  Similarity=0.492  Sum_probs=43.1

Q ss_pred             EEEEecCCCcHHHHHHHc------CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECC----
Q 032230           63 QEIECPDDTYILDAAEDA------GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTS----  132 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~~------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~----  132 (145)
                      ++++++++.||||+|..-      -+.+.++|+.|.||+|.++| .|.                 -+|||++.+..    
T Consensus        26 y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~~~~~   87 (239)
T PRK13552         26 YQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI-NGR-----------------PTLACRTLTSDYPDG   87 (239)
T ss_pred             EEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE-CCe-----------------EhhhhhccHhhcCCC
Confidence            456667999999999863      25678999999999999998 333                 37888887653    


Q ss_pred             CeEEE
Q 032230          133 DVTVE  137 (145)
Q Consensus       133 dl~I~  137 (145)
                      .++|+
T Consensus        88 ~i~ie   92 (239)
T PRK13552         88 VITLM   92 (239)
T ss_pred             cEEEE
Confidence            35554

>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B

Probab=98.30  E-value=7.4e-07  Score=63.50  Aligned_cols=53  Identities=30%  Similarity=0.603  Sum_probs=39.1

Q ss_pred             eEEEEecCCCcHHHHHHH------cCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECC
Q 032230           62 EQEIECPDDTYILDAAED------AGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTS  132 (145)
Q Consensus        62 ~~~~~v~~g~tLLeal~~------~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~  132 (145)
                      .+++++.++.|+||+|..      .-+...++|+.|.||+|.++| .|.                 -+|||.+.+..
T Consensus        20 ~y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~   78 (110)
T PF13085_consen   20 EYEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI-NGR-----------------PRLACKTQVDD   78 (110)
T ss_dssp             EEEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE-TTE-----------------EEEGGGSBGGG
T ss_pred             EEEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE-CCc-----------------eecceeeEchh
Confidence            356788899999999975      255688999999999999998 332                 37888887654

...

>PRK07860 NADH dehydrogenase subunit G; Validated

Probab=98.30  E-value=1.4e-06  Score=79.94  Aligned_cols=69  Identities=29%  Similarity=0.572  Sum_probs=58.0

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVL  124 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL  124 (145)
                      +++|+|   || +++++++|+|||++++++||.||+-|.      .|.|..|.|+| +|.               ...+-
T Consensus         4 ~v~~~i---dg-~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev-~g~---------------~~~~~   63 (797)
T PRK07860          4 LVTLTI---DG-VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV-EGQ---------------RKPQA   63 (797)
T ss_pred             eEEEEE---CC-EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE-CCC---------------ccccc
Confidence            467777   34 689999999999999999999999997      69999999998 221               12456


Q ss_pred             eEEeEECCCeEEEeC
Q 032230          125 TCVAYPTSDVTVETH  139 (145)
Q Consensus       125 aCq~~~~~dl~I~~~  139 (145)
                      +|.+.+..+|+|++.
T Consensus        64 aC~t~v~~gm~V~t~   78 (797)
T PRK07860         64 SCTTTVTDGMVVKTQ   78 (797)
T ss_pred             ccCCCCCCCcEEEeC
Confidence            999999999999986

>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=98.27  E-value=1.1e-06  Score=70.63  Aligned_cols=57  Identities=18%  Similarity=0.347  Sum_probs=42.4

Q ss_pred             EEEEecCCCcHHHHHHHc-------------CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeE
Q 032230           63 QEIECPDDTYILDAAEDA-------------GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAY  129 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~~-------------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~  129 (145)
                      ++|++.++.||||+|..-             -+...++|+.|.||+|.++| .|.                 -+|||+++
T Consensus        25 y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I-NG~-----------------p~LAC~t~   86 (249)
T PRK08640         25 FEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI-NGK-----------------PRQACTAL   86 (249)
T ss_pred             EEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE-CCc-----------------cchhhhCh
Confidence            456667899999999843             15678999999999999998 433                 36888887


Q ss_pred             EC---CCeEEE
Q 032230          130 PT---SDVTVE  137 (145)
Q Consensus       130 ~~---~dl~I~  137 (145)
                      +.   +.++|+
T Consensus        87 v~~~~~~i~ie   97 (249)
T PRK08640         87 IDQLEQPIRLE   97 (249)
T ss_pred             HHHcCCcEEEE
Confidence            63   345555

>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional

Probab=98.20  E-value=7.7e-06  Score=64.58  Aligned_cols=50  Identities=24%  Similarity=0.509  Sum_probs=39.1

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCC
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      ++++|  ++..++++++++++||++|+++ |+ ..+++|+.|.||.|.| +++|.
T Consensus        52 i~~~V--NG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~  103 (217)
T PRK11433         52 VTLKV--NGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGR  103 (217)
T ss_pred             EEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCE
Confidence            44555  2336678999999999999975 54 4889999999999999 44663

>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=98.19  E-value=5.4e-06  Score=69.04  Aligned_cols=39  Identities=23%  Similarity=0.451  Sum_probs=34.5

Q ss_pred             eEEEEecCCCcHHHHHHHcCCCCC------CCCCCccccCCeEEE
Q 032230           62 EQEIECPDDTYILDAAEDAGIDLP------YSCRAGSCSTCAGKV  100 (145)
Q Consensus        62 ~~~~~v~~g~tLLeal~~~Gi~i~------~~C~~G~CgtC~v~v  100 (145)
                      .+++++++|+||||+|.+.++.++      .+|+.|.||+|.|+|
T Consensus        20 ~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i   64 (329)
T PRK12577         20 TYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI   64 (329)
T ss_pred             EEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE
Confidence            367888999999999999999874      568899999999998

>PRK12386 fumarate reductase iron-sulfur subunit; Provisional

Probab=98.17  E-value=3.5e-06  Score=67.87  Aligned_cols=39  Identities=21%  Similarity=0.652  Sum_probs=34.0

Q ss_pred             eEEEEecCCCcHHHHHHHcCC------CCCCCCCCccccCCeEEE
Q 032230           62 EQEIECPDDTYILDAAEDAGI------DLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        62 ~~~~~v~~g~tLLeal~~~Gi------~i~~~C~~G~CgtC~v~v  100 (145)
                      .++++++++.|||++|..-+.      ...++|+.|.||+|.+.|
T Consensus        21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~I   65 (251)
T PRK12386         21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEI   65 (251)
T ss_pred             EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEE
Confidence            356778899999999999664      678999999999999998

>PRK12385 fumarate reductase iron-sulfur subunit; Provisional

Probab=98.12  E-value=2.6e-06  Score=68.27  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=31.1

Q ss_pred             EEEEecCCCcHHHHHHHc------CCCCCCCCCCccccCCeEEE
Q 032230           63 QEIECPDDTYILDAAEDA------GIDLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~~------Gi~i~~~C~~G~CgtC~v~v  100 (145)
                      ++++++++.|||++|...      .+...++|+.|.||+|.++|
T Consensus        27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~I   70 (244)
T PRK12385         27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV   70 (244)
T ss_pred             EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceE
Confidence            456677999999999653      34566899999999999998

>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated

Probab=98.12  E-value=3.8e-06  Score=67.60  Aligned_cols=56  Identities=20%  Similarity=0.361  Sum_probs=39.7

Q ss_pred             EEEE-ecCCCcHHHHHHHc----------CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230           63 QEIE-CPDDTYILDAAEDA----------GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP  130 (145)
Q Consensus        63 ~~~~-v~~g~tLLeal~~~----------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  130 (145)
                      ++|+ +.++.|||++|..-          .+.+.++|+.|+||+|.++| .|.....           ..-+|||++.+
T Consensus        22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I-NG~p~~~-----------~~~~LAC~t~~   88 (250)
T PRK07570         22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI-NGRPHGP-----------DRGTTTCQLHM   88 (250)
T ss_pred             EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE-CCccCCC-----------Ccccchhhhhh
Confidence            3444 45799999999742          36789999999999999997 5543211           11278888765

>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional

Probab=98.10  E-value=8.7e-06  Score=61.48  Aligned_cols=51  Identities=18%  Similarity=0.414  Sum_probs=41.9

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCC-CCCCCCCCccccCCeEEEEeCC
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGI-DLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi-~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      .+++++  ++..++++++++++||+.|++.|+ ....+|+.|.||.|.|.| +|.
T Consensus         8 ~i~~~v--NG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~   59 (159)
T PRK09908          8 TIECTI--NGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGT   59 (159)
T ss_pred             eEEEEE--CCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCc
Confidence            345555  344667889999999999999987 699999999999999997 554

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]

Probab=97.97  E-value=1.7e-05  Score=72.09  Aligned_cols=67  Identities=34%  Similarity=0.639  Sum_probs=51.8

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCC------ccccCCeEEEEeCCccCCCCCCCChhcccCCeEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRA------GSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVL  124 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~------G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL  124 (145)
                      +++|+|   +| +++++++|+|||++++++||.||+-|..      +.|.+|.|.+ +|.                 ..-
T Consensus         5 ~i~vti---dg-~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEi-dG~-----------------l~r   62 (978)
T COG3383           5 MITVTI---DG-RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEI-DGK-----------------LVR   62 (978)
T ss_pred             eEEEEE---CC-eEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEe-cCc-----------------eec
Confidence            467777   34 6899999999999999999999999983      8999999995 554                 234


Q ss_pred             eEEeEECCCeEEEeC
Q 032230          125 TCVAYPTSDVTVETH  139 (145)
Q Consensus       125 aCq~~~~~dl~I~~~  139 (145)
                      +|-+.+...++|.+.
T Consensus        63 sCsT~v~dGm~v~t~   77 (978)
T COG3383          63 SCSTPVEDGMVVRTN   77 (978)
T ss_pred             cccccccCCcEEecc
Confidence            566656556666554

>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=97.96  E-value=2.7e-05  Score=63.57  Aligned_cols=41  Identities=22%  Similarity=0.413  Sum_probs=34.5

Q ss_pred             eEEEEecCCCcHHHHHHHcCCCC------CCCCCCccccCCeEEEEeC
Q 032230           62 EQEIECPDDTYILDAAEDAGIDL------PYSCRAGSCSTCAGKVVSG  103 (145)
Q Consensus        62 ~~~~~v~~g~tLLeal~~~Gi~i------~~~C~~G~CgtC~v~v~~G  103 (145)
                      .+++++++|+|||++|.+.+..+      .++|+.|.||+|.|+| +|
T Consensus        26 ~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG   72 (279)
T PRK12576         26 EYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NG   72 (279)
T ss_pred             EEEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CC
Confidence            35678899999999999976543      5889999999999998 44

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein

Probab=97.93  E-value=6.3e-06  Score=64.79  Aligned_cols=41  Identities=32%  Similarity=0.604  Sum_probs=33.8

Q ss_pred             eEEEEecCCCcHHHHHHHcC------CCCCCCCCCccccCCeEEEEeC
Q 032230           62 EQEIECPDDTYILDAAEDAG------IDLPYSCRAGSCSTCAGKVVSG  103 (145)
Q Consensus        62 ~~~~~v~~g~tLLeal~~~G------i~i~~~C~~G~CgtC~v~v~~G  103 (145)
                      .+++++++|+|||++|.+.+      +....+|+.|.||+|.|+| +|
T Consensus        16 ~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG   62 (220)
T TIGR00384        16 SYEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NG   62 (220)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CC
Confidence            35677889999999999855      3457899999999999987 45

Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.

>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=97.93  E-value=2e-05  Score=62.95  Aligned_cols=55  Identities=24%  Similarity=0.451  Sum_probs=39.5

Q ss_pred             EEecC-CCcHHHHHHHc-----CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC---CCeE
Q 032230           65 IECPD-DTYILDAAEDA-----GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT---SDVT  135 (145)
Q Consensus        65 ~~v~~-g~tLLeal~~~-----Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~---~dl~  135 (145)
                      +++.+ +.||||+|..-     -+...++|+.|.||+|.++| .|.                 -+|||++++.   +.++
T Consensus        27 v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i-NG~-----------------~~LaC~t~~~~~~~~i~   88 (235)
T PRK12575         27 IAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI-NGR-----------------NGLACLTNMQALPREIV   88 (235)
T ss_pred             ecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE-CCe-----------------EcchhhCcHhHcCCCEE
Confidence            33334 56899999753     24568999999999999998 332                 5788888776   4456


Q ss_pred             EE
Q 032230          136 VE  137 (145)
Q Consensus       136 I~  137 (145)
                      |+
T Consensus        89 ie   90 (235)
T PRK12575         89 LR   90 (235)
T ss_pred             Ee
Confidence            55

>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit

Probab=97.91  E-value=1.6e-05  Score=64.90  Aligned_cols=50  Identities=26%  Similarity=0.570  Sum_probs=37.7

Q ss_pred             EEEec--C-CCcHHHHHHHc------CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC
Q 032230           64 EIECP--D-DTYILDAAEDA------GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT  131 (145)
Q Consensus        64 ~~~v~--~-g~tLLeal~~~------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  131 (145)
                      +|+++  + +.||||+|..-      -+.+.++|+.|+||+|.++| .|.                 -+|+|++++.
T Consensus        63 ~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I-NG~-----------------p~LAC~t~v~  121 (276)
T PLN00129         63 SYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI-DGK-----------------NTLACLTKID  121 (276)
T ss_pred             EEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE-CCc-----------------ccccccccHh
Confidence            44554  3 79999999862      24578999999999999997 333                 4788888765

>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit

Probab=97.87  E-value=3.4e-05  Score=57.67  Aligned_cols=49  Identities=22%  Similarity=0.486  Sum_probs=39.9

Q ss_pred             EEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCC
Q 032230           53 KVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      +++++  +..++++++++++||++|++. |+ ....+|+.|.||.|.|.| +|.
T Consensus         3 ~~~vN--G~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~   53 (148)
T TIGR03193         3 RLTVN--GRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGR   53 (148)
T ss_pred             EEEEC--CEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCe
Confidence            45553  345678899999999999974 76 689999999999999998 553

4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.

>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]

Probab=97.84  E-value=4.6e-05  Score=60.88  Aligned_cols=38  Identities=29%  Similarity=0.559  Sum_probs=31.3

Q ss_pred             EEEEecCCCcHHHHHHH------cCCCCCCCCCCccccCCeEEE
Q 032230           63 QEIECPDDTYILDAAED------AGIDLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~------~Gi~i~~~C~~G~CgtC~v~v  100 (145)
                      ++++..+|.||||+|..      .-+.+.++|+.|+||+|.+.|
T Consensus        22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I   65 (234)
T COG0479          22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI   65 (234)
T ss_pred             EEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE
Confidence            44555699999999975      234678999999999999997

>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=97.72  E-value=3.8e-05  Score=60.87  Aligned_cols=42  Identities=26%  Similarity=0.398  Sum_probs=34.8

Q ss_pred             eEEEEec-CCCcHHHHHHHcC-CC-----CCCCCCCccccCCeEEEEeCC
Q 032230           62 EQEIECP-DDTYILDAAEDAG-ID-----LPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        62 ~~~~~v~-~g~tLLeal~~~G-i~-----i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      .++++++ +|+|||++|.+.+ ..     ..++|+.|.||+|.|+| +|.
T Consensus        19 ~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~   67 (232)
T PRK05950         19 TYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGK   67 (232)
T ss_pred             EEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCc
Confidence            3567888 9999999999987 33     36889999999999998 554

>TIGR03198 pucE xanthine dehydrogenase E subunit

Probab=97.51  E-value=0.00023  Score=53.33  Aligned_cols=50  Identities=18%  Similarity=0.395  Sum_probs=39.8

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCC
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      ++++|+  +..+++.+.++++|++.|++. |+ ....+|+.|.||.|.|.| +|.
T Consensus         4 i~f~vN--G~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv-dG~   55 (151)
T TIGR03198         4 FRFTVN--GQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI-DGK   55 (151)
T ss_pred             EEEEEC--CEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE-CCc
Confidence            456663  335667788999999999974 77 588899999999999998 553

This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.

>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]

Probab=97.48  E-value=0.00032  Score=52.76  Aligned_cols=51  Identities=24%  Similarity=0.460  Sum_probs=41.2

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHH-cCC-CCCCCCCCccccCCeEEEEeCC
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAED-AGI-DLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~-~Gi-~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      .++++++  +..+++++.++++||++|++ .|+ ...++|+.|.||.|.|.+ +|+
T Consensus         3 ~i~ltvN--G~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv-DG~   55 (156)
T COG2080           3 PITLTVN--GEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV-DGE   55 (156)
T ss_pred             cEEEEEC--CeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE-CCe
Confidence            3566663  44678999999999999995 566 589999999999999987 554

>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit

Probab=96.94  E-value=0.0012  Score=57.50  Aligned_cols=45  Identities=20%  Similarity=0.400  Sum_probs=37.1

Q ss_pred             EEEECCCCeEEE-EecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEE
Q 032230           54 VKLITPEGEQEI-ECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        54 Vti~~~~~~~~~-~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v  100 (145)
                      ++++  +..+++ +++++++||+.+++. |+ ....+|+.|.||.|.|.|
T Consensus         3 ~~~N--g~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~   50 (467)
T TIGR02963         3 FFLN--GETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV   50 (467)
T ss_pred             EEEC--CEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence            4552  335567 588999999999974 87 699999999999999998

Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and

>PRK09800 putative hypoxanthine oxidase; Provisional

Probab=96.83  E-value=0.0023  Score=60.18  Aligned_cols=50  Identities=16%  Similarity=0.108  Sum_probs=39.2

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCC-CCCCC-CCCccccCCeEEEEeCC
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGI-DLPYS-CRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi-~i~~~-C~~G~CgtC~v~v~~G~  104 (145)
                      ++++++  +..++++++++++||+.|++.|+ ..... |+.|.||.|.|.| +|.
T Consensus         3 i~~~vN--g~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg~   54 (956)
T PRK09800          3 IHFTLN--GAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NGN   54 (956)
T ss_pred             EEEEEC--CEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CCe
Confidence            455553  44667889999999999999777 46665 7899999999998 554

>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1

Probab=96.68  E-value=0.0034  Score=58.40  Aligned_cols=47  Identities=19%  Similarity=0.544  Sum_probs=39.5

Q ss_pred             EEEEECCCCeEEEEecCCCcHHHHHHH-cCC-CCCCCCCCccccCCeEEEEeCC
Q 032230           53 KVKLITPEGEQEIECPDDTYILDAAED-AGI-DLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        53 ~Vti~~~~~~~~~~v~~g~tLLeal~~-~Gi-~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      +++++   | ++++++++++||+.|++ .|+ ....+|+.|.||.|.|.| +|.
T Consensus         2 ~~~~n---g-~~~~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~-dg~   50 (848)
T TIGR03311         2 EFIVN---G-REVDVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV-NGK   50 (848)
T ss_pred             EEEEC---C-EEeeCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE-CCe
Confidence            56663   4 47899999999999996 587 799999999999999998 554

Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.

>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit

Probab=96.28  E-value=0.006  Score=57.41  Aligned_cols=43  Identities=16%  Similarity=0.154  Sum_probs=36.4

Q ss_pred             CeEEEEecCCCcHHHHHHHcCCC-CCC-CCCCccccCCeEEEEeCC
Q 032230           61 GEQEIECPDDTYILDAAEDAGID-LPY-SCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        61 ~~~~~~v~~g~tLLeal~~~Gi~-i~~-~C~~G~CgtC~v~v~~G~  104 (145)
                      ..++++++++++||+.|++.|+. +.. .|+.|.||.|.|.| +|.
T Consensus         6 ~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~-dg~   50 (951)
T TIGR03313         6 APQTLECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF-NGV   50 (951)
T ss_pred             EEEEEecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE-CCe
Confidence            35678899999999999998874 777 69999999999998 554

Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.

>PLN00192 aldehyde oxidase

Probab=96.25  E-value=0.0089  Score=58.16  Aligned_cols=47  Identities=15%  Similarity=0.335  Sum_probs=37.9

Q ss_pred             eEEEEECCCCeEEE-EecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEE
Q 032230           52 YKVKLITPEGEQEI-ECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        52 ~~Vti~~~~~~~~~-~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v  100 (145)
                      +++++  ++..+++ ++++++|||+.|++. |+ .....|+.|.||.|.|-|
T Consensus         6 i~~~v--Ng~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v   55 (1344)
T PLN00192          6 LVFAV--NGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLL   55 (1344)
T ss_pred             EEEEE--CCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEE
Confidence            44555  2335566 588999999999975 77 689999999999999999

>TIGR02969 mam_aldehyde_ox aldehyde oxidase

Probab=95.86  E-value=0.012  Score=57.23  Aligned_cols=37  Identities=19%  Similarity=0.486  Sum_probs=33.0

Q ss_pred             EEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEE
Q 032230           65 IECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVV  101 (145)
Q Consensus        65 ~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~  101 (145)
                      .+++++++||+.|++. |+ ....+|+.|.||.|.|.|-
T Consensus        15 ~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~   53 (1330)
T TIGR02969        15 KNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS   53 (1330)
T ss_pred             ccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence            4789999999999974 76 6899999999999999984

Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.

>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]

Probab=95.79  E-value=0.016  Score=51.22  Aligned_cols=40  Identities=33%  Similarity=0.628  Sum_probs=36.9

Q ss_pred             EEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEe
Q 032230           63 QEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVS  102 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~  102 (145)
                      +.+.+++|.|+|++....|++||--|.      .|.|..|.|+|..
T Consensus        40 ~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek   85 (708)
T KOG2282|consen   40 QSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK   85 (708)
T ss_pred             eeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence            679999999999999999999999998      3999999999854

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=94.54  E-value=0.17  Score=47.83  Aligned_cols=73  Identities=11%  Similarity=0.077  Sum_probs=52.9

Q ss_pred             eeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCC-----C------CCCCccccCCeEEEEeCCccCCCCCCCChhcc
Q 032230           50 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLP-----Y------SCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQI  118 (145)
Q Consensus        50 ~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~-----~------~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~  118 (145)
                      ..++|+|   +| +.+++.+|+||..||+.+|+.+-     +      -|..|.|--|.|.|-.|...            
T Consensus        11 ~~~~~~~---dg-~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~------------   74 (985)
T TIGR01372        11 RPLRFTF---DG-KSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQR------------   74 (985)
T ss_pred             CeEEEEE---CC-EEeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCC------------
Confidence            3456666   34 68999999999999999998531     2      37778899999999433110            


Q ss_pred             cCCeEEeEEeEECCCeEEEeC
Q 032230          119 DAGYVLTCVAYPTSDVTVETH  139 (145)
Q Consensus       119 ~~g~rLaCq~~~~~dl~I~~~  139 (145)
                       ..-+.+|++.+..+|+|+..
T Consensus        75 -~~~~~ac~~~~~~gm~~~~~   94 (985)
T TIGR01372        75 -EPNTRATTQELYDGLVATSQ   94 (985)
T ss_pred             -CCCccceeEEcccCCEEecc
Confidence             11356899888888888764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]

Probab=92.90  E-value=0.38  Score=38.44  Aligned_cols=46  Identities=26%  Similarity=0.548  Sum_probs=33.6

Q ss_pred             CCcHHHHHHH--cCC----CCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCC
Q 032230           70 DTYILDAAED--AGI----DLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSD  133 (145)
Q Consensus        70 g~tLLeal~~--~Gi----~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d  133 (145)
                      |--+||++.+  +.+    -+.-+|+.|+||+|...+-                  ..-.|+|.+.+..+
T Consensus        76 GpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~------------------G~NtLACi~kId~n  127 (288)
T KOG3049|consen   76 GPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIN------------------GTNTLACICKIDQN  127 (288)
T ss_pred             chHHHHHHHHhhcccCCceehhhhhhccccccceeccC------------------CCceeEEEEeeccC
Confidence            6679999985  333    3577999999999999872                  22467887777653

>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]

Probab=92.41  E-value=0.3  Score=42.04  Aligned_cols=49  Identities=20%  Similarity=0.438  Sum_probs=36.4

Q ss_pred             eEEEEECCCCeEE-EEecCCCcHHHHHH-HcCC-CCCCCCCCccccCCeEEE
Q 032230           52 YKVKLITPEGEQE-IECPDDTYILDAAE-DAGI-DLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        52 ~~Vti~~~~~~~~-~~v~~g~tLLeal~-~~Gi-~i~~~C~~G~CgtC~v~v  100 (145)
                      .+|.|..++..+. -.+++..||||.|+ +.++ .-.-+|..|-||.|.|-|
T Consensus         7 ~~irf~lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlV   58 (493)
T COG4630           7 NTIRFLLNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV   58 (493)
T ss_pred             ceeEEEecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEE
Confidence            4455543333222 35789999999999 6677 478899999999999977

>PLN02906 xanthine dehydrogenase

Probab=90.47  E-value=0.29  Score=47.84  Aligned_cols=32  Identities=25%  Similarity=0.587  Sum_probs=28.5

Q ss_pred             CCcHHHHHHHcCC-CCCCCCCCccccCCeEEEE
Q 032230           70 DTYILDAAEDAGI-DLPYSCRAGSCSTCAGKVV  101 (145)
Q Consensus        70 g~tLLeal~~~Gi-~i~~~C~~G~CgtC~v~v~  101 (145)
                      +++||+.|++.|+ ....+|+.|.||.|.|.|-
T Consensus         1 ~~~ll~~LR~~~l~g~k~gC~~g~CGaCtv~~~   33 (1319)
T PLN02906          1 HQTLLEYLRDLGLTGTKLGCGEGGCGACTVMVS   33 (1319)
T ss_pred             CCcHHHHHHhCCCCCCCCCcCCCCCCCeEEEEC
Confidence            4689999998776 5899999999999999985

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=88.68  E-value=0.33  Score=39.40  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=35.5

Q ss_pred             eeccCCccc--cccCCCCceeeeeccccCCCCCCcccceeeeEEE-EECCCCeEEEEecCCCcHHHHHH
Q 032230           13 FIRNKPTVT--SLKAMPNMGQALFGLKANNNRGGRVIAMATYKVK-LITPEGEQEIECPDDTYILDAAE   78 (145)
Q Consensus        13 ~~~~~~~~~--~~~~~~~~~~e~F~~~~~~~~~~~~~~m~~~~Vt-i~~~~~~~~~~v~~g~tLLeal~   78 (145)
                      |....+...  ..++.+++|.|.|++.......+       .... +.. . .+++.+.+|+||||+++
T Consensus       207 fm~av~~~l~~~g~~~~~vh~E~F~~~~~~~~~~-------~~~~~~~~-s-~~~~~~~~g~t~lea~~  266 (266)
T COG1018         207 FMQAVRLALEALGVPDDRVHLEGFGPMLKDTAAL-------LPFTTLAR-S-GKEVRVPPGQTLLEAAE  266 (266)
T ss_pred             HHHHHHHHHHHcCCChhcEEEeecCCCCcccccc-------ccchhhcc-c-cceEecCCCchHHHhhC
Confidence            444334433  55778999999999886321111       1111 322 2 36799999999999874

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=88.09  E-value=0.31  Score=38.44  Aligned_cols=31  Identities=13%  Similarity=0.492  Sum_probs=23.3

Q ss_pred             cHHHHHHHcCCCC------CCCCCCccccCCeEEEEe
Q 032230           72 YILDAAEDAGIDL------PYSCRAGSCSTCAGKVVS  102 (145)
Q Consensus        72 tLLeal~~~Gi~i------~~~C~~G~CgtC~v~v~~  102 (145)
                      .+.+.+.++|++.      ...||.|.||+|.+.+..
T Consensus       195 ~v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~  231 (250)
T PRK00054        195 KVVEILKEKKVPAYVSLERRMKCGIGACGACVCDTET  231 (250)
T ss_pred             HHHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCC
Confidence            3556677788753      557999999999999643

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=87.49  E-value=0.42  Score=37.71  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=23.6

Q ss_pred             HHHHHHHcCCCC------CCCCCCccccCCeEEEEeC
Q 032230           73 ILDAAEDAGIDL------PYSCRAGSCSTCAGKVVSG  103 (145)
Q Consensus        73 LLeal~~~Gi~i------~~~C~~G~CgtC~v~v~~G  103 (145)
                      +.+.+.+.|++.      ...||.|.|+.|.++. .|
T Consensus       195 ~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~-~~  230 (248)
T cd06219         195 VSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTV-GG  230 (248)
T ss_pred             HHHHHHHcCCCEEEEecccccCccceeeeEEEEe-CC
Confidence            456667788863      6689999999999996 44

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=87.18  E-value=0.6  Score=36.82  Aligned_cols=31  Identities=23%  Similarity=0.530  Sum_probs=24.6

Q ss_pred             cHHHHHHHcCCCC------CCCCCCccccCCeEEEEe
Q 032230           72 YILDAAEDAGIDL------PYSCRAGSCSTCAGKVVS  102 (145)
Q Consensus        72 tLLeal~~~Gi~i------~~~C~~G~CgtC~v~v~~  102 (145)
                      .+.+.+++.|++.      +..|+.|.||.|+....+
T Consensus       194 ~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~~~  230 (246)
T cd06218         194 AVAELAAERGVPCQVSLEERMACGIGACLGCVVKTKD  230 (246)
T ss_pred             HHHHHHHhcCCCEEEEecccccCccceecccEEEeec
Confidence            4566677888863      667999999999999854

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=84.86  E-value=3.2  Score=26.62  Aligned_cols=36  Identities=28%  Similarity=0.327  Sum_probs=27.3

Q ss_pred             eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCC
Q 032230           49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDL   84 (145)
Q Consensus        49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i   84 (145)
                      |.+.+|++......++++++++.|+.+.+.+.|++.
T Consensus         2 ~~mm~v~vng~~~~~~~~~~~~~tv~~ll~~l~~~~   37 (70)
T PRK08364          2 MLMIRVKVIGRGIEKEIEWRKGMKVADILRAVGFNT   37 (70)
T ss_pred             ceEEEEEEeccccceEEEcCCCCcHHHHHHHcCCCC
Confidence            556788886322245788899999999999998754

>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]

Probab=84.72  E-value=1.5  Score=42.40  Aligned_cols=36  Identities=19%  Similarity=0.474  Sum_probs=30.8

Q ss_pred             ecCCCcHHHHHHH-cCC-CCCCCCCCccccCCeEEEEe
Q 032230           67 CPDDTYILDAAED-AGI-DLPYSCRAGSCSTCAGKVVS  102 (145)
Q Consensus        67 v~~g~tLLeal~~-~Gi-~i~~~C~~G~CgtC~v~v~~  102 (145)
                      ++++.||++.|++ .|+ ...+.|+.|.||.|.|-|-.
T Consensus        17 vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~   54 (1257)
T KOG0430|consen   17 LPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSK   54 (1257)
T ss_pred             CCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEec
Confidence            6889999999986 466 58999999999999998843

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=84.07  E-value=0.58  Score=37.94  Aligned_cols=33  Identities=15%  Similarity=0.464  Sum_probs=25.8

Q ss_pred             CcHHHHHHHcCCC---------CCCCCCCccccCCeEEEEeC
Q 032230           71 TYILDAAEDAGID---------LPYSCRAGSCSTCAGKVVSG  103 (145)
Q Consensus        71 ~tLLeal~~~Gi~---------i~~~C~~G~CgtC~v~v~~G  103 (145)
                      +.+.+.+.+.|++         -...||.|.||.|+|....|
T Consensus       225 ~~v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~  266 (289)
T PRK08345        225 KFVFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTS  266 (289)
T ss_pred             HHHHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCc
Confidence            4577778888885         25579999999999997554

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=81.79  E-value=1.3  Score=34.49  Aligned_cols=31  Identities=19%  Similarity=0.503  Sum_probs=23.6

Q ss_pred             CcHHHHHHHcCCC------CCCCCCCccccCCeEEEE
Q 032230           71 TYILDAAEDAGID------LPYSCRAGSCSTCAGKVV  101 (145)
Q Consensus        71 ~tLLeal~~~Gi~------i~~~C~~G~CgtC~v~v~  101 (145)
                      +.+.+.+++.|++      --..|+.|.||.|.|...
T Consensus       180 ~~~~~~L~~~g~~~~i~~e~f~~cg~g~C~~C~v~~~  216 (233)
T cd06220         180 YKVLEILDERGVRAQFSLERYMKCGIGICGSCCIDPT  216 (233)
T ss_pred             HHHHHHHHhcCCcEEEEecccccCcCCCcCccEeccC
Confidence            3466677788883      235799999999999974

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []

Probab=80.86  E-value=0.94  Score=26.40  Aligned_cols=18  Identities=33%  Similarity=0.861  Sum_probs=14.0

Q ss_pred             CCCCCccccCCeEEEEeC
Q 032230           86 YSCRAGSCSTCAGKVVSG  103 (145)
Q Consensus        86 ~~C~~G~CgtC~v~v~~G  103 (145)
                      -.|+.|.|+.|.+...++
T Consensus         4 M~CG~G~C~~C~v~~~~~   21 (40)
T PF10418_consen    4 MACGVGACGGCVVPVKDG   21 (40)
T ss_dssp             -SSSSSSS-TTEEECSST
T ss_pred             ccCCCcEeCCcEeeeecC
Confidence            469999999999998654

The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
1off_A	97	2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803 L		3e-36
1dox_A	96	1h And 15n Sequential Assignment, Secondary Structu		2e-35
2pvg_C	96	Crystal Srtucture Of The Binary Complex Between Fer		6e-35
3p63_A	96	Structure Of M. Laminosus Ferredoxin With A Shorter		8e-34
1a70_A	97	Spinach Ferredoxin Length = 97		6e-33
1pfd_A	96	The Solution Structure Of High Plant Parsley [2fe-2		1e-32
1gaq_B	98	Crystal Structure Of The Complex Between Ferredoxin		7e-32
1rfk_A	98	Crystal Structure Of 2fe2s Ferredoxin From Thermoph		7e-31
1awd_A	94	Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fu		6e-30
1qob_A	98	Ferredoxin Mutation D62k Length = 98		8e-30
1fxa_A	98	Crystallization And Structure Determination To 2.5-		1e-29
1j7b_A	98	Structure Of The Anabaena Ferredoxin Mutant E94k Le		2e-29
1qog_A	98	Ferredoxin Mutation S47a Length = 98		3e-29
1j7c_A	98	Structure Of The Anabaena Ferredoxin Mutant E95k Le		3e-29
4fxc_A	98	Tertiary Structure Of [2fe-2s] Ferredoxin From Spir		3e-29
1qof_A	98	Ferredoxin Mutation Q70k Length = 98		4e-29
1fxi_A	96	Structure Of The [2fe-2s] Ferredoxin I From The Blu		4e-29
1j7a_A	98	Structure Of The Anabaena Ferredoxin D68k Mutant Le		6e-29
1qoa_A	98	Ferredoxin Mutation C49s Length = 98		9e-29
3av8_A	97	Refined Structure Of Plant-Type [2fe-2s] Ferredoxin		5e-28
3b2g_A	98	Leptolyngbya Boryana Ferredoxin Length = 98		2e-27
1roe_A	97	Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elo		3e-26
3ab5_A	97	Crystal Structure Of The 2fe 2s Ferredoxin From Cya		6e-25
1frr_A	95	Crystal Structure Of [2fe-2s] Ferredoxin I From Equ		3e-24
1iue_A	98	Crystal Structure Analysis Of Ferredoxin From Plasm		2e-22
1wri_A	93	Crystal Structure Of Ferredoxin Isoform Ii From E.		7e-18
1frd_A	98	Molecular Structure Of The Oxidized, Recombinant, H		2e-11
3zyy_X	631	Reductive Activator For Corrinoid,Iron-Sulfur Prote		1e-07
1e10_A	128	[2fe-2s]-Ferredoxin From Halobacterium Salinarum Le		2e-07
1e0z_A	128	[2fe-2s]-Ferredoxin From Halobacterium Salinarum Le		2e-07
1doi_A	128	2fe-2s Ferredoxin From Haloarcula Marismortui Lengt		5e-07
1krh_A	338	X-Ray Stucture Of Benzoate Dioxygenase Reductase Le		6e-05

>pdb|1OFF|A Chain A, 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803 Length = 97

Iteration: 1
 Score =  146 bits (369), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 79/96 (82%)
Query: 49  MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXX 108
           MA+Y VKLITP+GE  IEC DDTYILDAAE+AG+DLPYSCRAG+CSTCAGK         
Sbjct: 1   MASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQS 60
Query: 109 XXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
              FL+DDQI+AGYVLTCVAYPTSD T+ETHK+E++
Sbjct: 61  DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96

>pdb|1DOX|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis Sp. Pcc 6803 Length = 96

Iteration: 1
 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 78/95 (82%)
Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
           A+Y VKLITP+GE  IEC DDTYILDAAE+AG+DLPYSCRAG+CSTCAGK          
Sbjct: 1   ASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
             FL+DDQI+AGYVLTCVAYPTSD T+ETHK+E++
Sbjct: 61  QSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95

>pdb|2PVG|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin And Ferredoxin:thioredoxin Reductase Length = 96

Iteration: 1
 Score =  142 bits (358), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 78/95 (82%)
Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
           A+Y VKLITP+GE  IEC DDTYILDAAE+AG++LPYSCRAG+CSTCAGK          
Sbjct: 1   ASYTVKLITPDGESSIECSDDTYILDAAEEAGLELPYSCRAGACSTCAGKITAGSVDQSD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
             FL+DDQI+AGYVLTCVAYPTSD T+ETHK+E++
Sbjct: 61  QSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95

>pdb|3P63|A Chain A, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2 Loop Length = 96

Iteration: 1
 Score =  139 bits (349), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 74/95 (77%)
Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
           ATYKV LI P G + IE PDD YILDAAE+AGIDLPYSCRAG+CSTCAGK          
Sbjct: 1   ATYKVTLINPTGNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
             FL+DDQI+AGYVLTCVAYPTSD  +ETHK+EE+
Sbjct: 61  QSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 95

>pdb|1A70|A Chain A, Spinach Ferredoxin Length = 97

Iteration: 1
 Score =  135 bits (341), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 62/94 (65%), Positives = 71/94 (75%)
Query: 52  YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXX 111
           YKV L+TP G  E +CPDD YILDAAE+ GIDLPYSCRAGSCS+CAGK            
Sbjct: 3   YKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQS 62
Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
           FL+DDQID G+VLTC AYP SDVT+ETHK EE++
Sbjct: 63  FLDDDQIDEGWVLTCAAYPVSDVTIETHKKEELT 96

>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s] Ferredoxin, Nmr, 18 Structures Length = 96

Iteration: 1
 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/95 (65%), Positives = 74/95 (77%)
Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
           ATY VKLITP+GE E +C DD Y+LD AE+ GID+PYSCRAGSCS+CAGK          
Sbjct: 1   ATYNVKLITPDGEVEFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQSD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
             FL+D+Q+DAGYVLTC AYPTSDV +ETHK+EE+
Sbjct: 61  QSFLDDEQMDAGYVLTCHAYPTSDVVIETHKEEEI 95

>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 98

Iteration: 1
 Score =  132 bits (332), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 73/96 (76%)
Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
           ATY VKLITPEGE E++ PDD YILD AE+ GIDLPYSCRAGSCS+CAGK          
Sbjct: 1   ATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
             +L+D QI  G+VLTC AYPTSDV +ETHK+EE++
Sbjct: 61  QSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELT 96

>pdb|1RFK|A Chain A, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic Cyanobacterium Mastigocladus Laminosus Length = 98

Iteration: 1
 Score =  129 bits (323), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50  ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           ATYKV LI   EG  + IE PDD YILDAAE+AGIDLPYSCRAG+CSTCAGK        
Sbjct: 1   ATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
               FL+DDQI+AGYVLTCVAYPTSD  +ETHK+EE+
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 97

>pdb|1AWD|A Chain A, Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fusca Length = 94

Iteration: 1
 Score =  125 bits (315), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 70/90 (77%)
Query: 52  YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXX 111
           YKV L TP GE+ IECP+DTYILDAAE+AG+DLPYSCRAG+CS+CAGK            
Sbjct: 1   YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQS 60
Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKD 141
           FL+D Q+  G+VLTCVAYPTSDVT+ TH++
Sbjct: 61  FLDDAQMGKGFVLTCVAYPTSDVTILTHQE 90

>pdb|1QOB|A Chain A, Ferredoxin Mutation D62k Length = 98

Iteration: 1
 Score =  125 bits (314), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50  ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           AT+KV LI   EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK        
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
               FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61  SKQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|1FXA|A Chain A, Crystallization And Structure Determination To 2.5-Angstroms Resolution Of The Oxidized [2fe-2s] Ferredoxin Isolated From Anabaena 7120 Length = 98

Iteration: 1
 Score =  125 bits (313), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50  ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           AT+KV LI   EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK        
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
               FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|1J7B|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E94k Length = 98

Iteration: 1
 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 73/97 (75%), Gaps = 2/97 (2%)
Query: 50  ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           AT+KV LI   EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK        
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
               FL+DDQI+AGYVLTCVAYPTSDV ++THK E++
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKKEDL 97

>pdb|1QOG|A Chain A, Ferredoxin Mutation S47a Length = 98

Iteration: 1
 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50  ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           AT+KV LI   EG + EIE PDD YILDAAE+ G DLP+SCRAG+C+TCAGK        
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACATCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
               FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|1J7C|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E95k Length = 98

Iteration: 1
 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50  ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           AT+KV LI   EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK        
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
               FL+DDQI+AGYVLTCVAYPTSDV ++THK++++
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEKDL 97

>pdb|4FXC|A Chain A, Tertiary Structure Of [2fe-2s] Ferredoxin From Spirulina Platensis Refined At 2.5 Angstroms Resolution: Structural Comparisons Of Plant-Type Ferredoxins And An Electrostatic Potential Analysis Length = 98

Iteration: 1
 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50  ATYKVKLIT-PEGEQE-IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           ATYKV LI   EG  E I+C DDTYILDAAE+AG+DLPYSCRAG+CSTCAG         
Sbjct: 1   ATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
               FL+DDQI+AGYVLTCVAYPTSD T++TH++E +
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 97

>pdb|1QOF|A Chain A, Ferredoxin Mutation Q70k Length = 98

Iteration: 1
 Score =  123 bits (308), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 50  ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           AT+KV LI   EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK        
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
               FL+DD+I+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61  SDQSFLDDDKIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|1FXI|A Chain A, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green Alga Aphanothece Sacrum At 2.2 Angstroms Resolution Length = 96

Iteration: 1
 Score =  123 bits (308), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 69/95 (72%)
Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
           A+YKV L TP+G+  I  PDD YILD AE+ G+DLPYSCRAG+CSTCAGK          
Sbjct: 1   ASYKVTLKTPDGDNVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDED 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
             FL+DDQI AGY+LTCVAYPT D  +ETHK+E +
Sbjct: 61  QSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 95

>pdb|1J7A|A Chain A, Structure Of The Anabaena Ferredoxin D68k Mutant Length = 98

Iteration: 1
 Score =  122 bits (307), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 73/97 (75%), Gaps = 2/97 (2%)
Query: 50  ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           AT+KV LI   EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK        
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
               FL+ DQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61  SDQSFLDKDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|1QOA|A Chain A, Ferredoxin Mutation C49s Length = 98

Iteration: 1
 Score =  122 bits (305), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 73/97 (75%), Gaps = 2/97 (2%)
Query: 50  ATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           AT+KV LI   EG + EIE PDD YILDAAE+ G DLP+SCRAG+CST AGK        
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTSAGKLVSGTVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
               FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|3AV8|A Chain A, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From Aphanothece Sacrum At 1.46 A Resolution Length = 97

Iteration: 1
 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXX-XXXXXX 108
           A+YKV L TP+G+  I  PDD YILD AE+ G+DLPYSCRAG+CSTCAGK          
Sbjct: 1   ASYKVTLKTPDGDNVITVPDDEYILDVAEEQGLDLPYSCRAGACSTCAGKLVSGPAPDQS 60
Query: 109 XXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
              FL+DDQI AGY+LTCVAYPT D  +ETHK+E +
Sbjct: 61  DQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96

>pdb|3B2G|A Chain A, Leptolyngbya Boryana Ferredoxin Length = 98

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 51  TYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXX 108
           ++KV LI   EG    IE PDD YILDAAE+ GIDLPYSCRAG+CSTCAGK         
Sbjct: 2   SFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQS 61
Query: 109 XXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
              FL+DDQI AGYVLTCVAYPTSD T+ TH++E++
Sbjct: 62  DQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 97

>pdb|1ROE|A Chain A, Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elongatus Length = 97

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Query: 50  ATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXX 108
           ATYKV L+ P+G E  I+ P+D YILD AE+ G+DLP+SCRAG+CSTCAGK         
Sbjct: 1   ATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQS 60
Query: 109 XXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
              FL+DDQI+ G+VLTCVAYP SD  + T+++EE+
Sbjct: 61  DQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 96

>pdb|3AB5|A Chain A, Crystal Structure Of The 2fe 2s Ferredoxin From Cyanidioschyzon Merolae Length = 97

Iteration: 1
 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Query: 52  YKVKLIT-PEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
           YK++L+   EG +  I+C  D YILDAAE+ G+DLPYSCRAG+CSTCAGK          
Sbjct: 2   YKIQLVNQKEGIDVTIQCAGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSD 61
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
             FL++DQI  G++LTCVAYPTSD  ++TH++E +
Sbjct: 62  QSFLDEDQISKGFILTCVAYPTSDCVIQTHQEEAL 96

>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum Arvense At 1.8 Angstroms Resolution Length = 95

Iteration: 1
 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 65/93 (69%)
Query: 52  YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXX 111
           YK  L TP GE  ++ P+ T ILDAAE+AG DLP+SCRAG+CS+C GK            
Sbjct: 2   YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGS 61
Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           FL+D Q++ G+VLTC+A P SD+ +ETHK+EE+
Sbjct: 62  FLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94

>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium Falciparum Length = 98

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 62/95 (65%)
Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXX 109
           A Y + L T +GE++IEC +D YILDA+E   ++LPYSCR GSCSTCA K          
Sbjct: 1   AFYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDD 60
Query: 110 XXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
             +L+++QI   Y+L C  YP SD  +ETHK++E+
Sbjct: 61  QSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDEL 95

>pdb|1WRI|A Chain A, Crystal Structure Of Ferredoxin Isoform Ii From E. Arvense Length = 93

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 52  YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXX 111
           YKV L TP+G+   +      ++D   +   DLP SC+AG+CSTC GK            
Sbjct: 2   YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGS 60
Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           FL+D+QI+ GYVLTC+A P SDV +ETHK++E+
Sbjct: 61  FLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93

>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant, Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120 Determined To 1.7 Angstroms Resolution Length = 98

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 62/94 (65%), Gaps = 2/94 (2%)
Query: 50  ATYKVKLITPEGEQE--IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           A+Y+V+LI  + + +  IE  ++T ILD AE+ GI+LP+SC +GSCS+C GK        
Sbjct: 1   ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 141
               FL+D+Q+  G+ L CV YP S+ T++TH++
Sbjct: 61  SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQE 94

>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein Length = 631

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 49  MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKXXXXXXXX 107
           MA YKV L  P+ ++E+   ++T +++A   AGI++   C  AG+C  C  +        
Sbjct: 1   MAEYKV-LFKPD-QKEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRV 58
Query: 108 XXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
                L+ ++I  GYVL C  YP SD+ +E   D  ++
Sbjct: 59  ESYGKLKQEEIAQGYVLACQTYPESDLIIEIPFDSRLT 96

>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum Length = 128

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 65  IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYV- 123
           +E  +  YIL+AAE  G D P+SCRAG+C+ CA               L D++++   V 
Sbjct: 40  MEVAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVR 99
Query: 124 LTCVAYPTSD 133
           LTC+  P +D
Sbjct: 100 LTCIGSPAAD 109

>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum Length = 128

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 65  IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYV- 123
           +E  +  YIL+AAE  G D P+SCRAG+C+ CA               L D++++   V 
Sbjct: 40  MEVAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVR 99
Query: 124 LTCVAYPTSD 133
           LTC+  P +D
Sbjct: 100 LTCIGSPAAD 109

>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui Length = 128

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 65  IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQI-DAGYV 123
           +E  +  YIL+AAE  G D P+SCRAG+C+ CA               L D+++ D    
Sbjct: 40  LEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVR 99
Query: 124 LTCVAYPTSD 133
           LTC+  P +D
Sbjct: 100 LTCIGSPDAD 109

>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase Length = 338

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 49  MATYKVKLITPEGEQEIECPDDTYIL-DAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXX 107
           M+ ++V L   +G     C      L DAA    I++P  CR G C TC           
Sbjct: 1   MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDM 60
Query: 108 XXXXFLED----DQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
               ++ED    ++   GYVL C   PTSD   +     E+
Sbjct: 61  PEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQASSEV 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	1e-58
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	3e-58
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	7e-58
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	1e-57
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	2e-55
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	4e-55
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	2e-53
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	3e-48
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	7e-48
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	5e-26
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	2e-24
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	9e-21
3i9v_3	783	NADH-quinone oxidoreductase subunit 3; electron tr	6e-04

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A Length = 97

 Score =  176 bits (448), Expect = 1e-58
 Identities = 68/95 (71%), Positives = 80/95 (84%)

Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSD 109
           A YKV L+TP G  E +CPDD YILDAAE+ GIDLPYSCRAGSCS+CAGK+ +GS++Q D
Sbjct: 1   AAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDD 60

Query: 110 GSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
            SFL+DDQID G+VLTC AYP SDVT+ETHK EE+
Sbjct: 61  QSFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEEL 95

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1 Length = 98

 Score =  174 bits (444), Expect = 3e-58
 Identities = 51/94 (54%), Positives = 68/94 (72%)

Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSD 109
           A Y + L T +GE++IEC +D YILDA+E   ++LPYSCR GSCSTCA K+V G VD  D
Sbjct: 1   AFYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDD 60

Query: 110 GSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEE 143
            S+L+++QI   Y+L C  YP SD  +ETHK++E
Sbjct: 61  QSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDE 94

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1 Length = 94

 Score =  173 bits (442), Expect = 7e-58
 Identities = 67/93 (72%), Positives = 80/93 (86%)

Query: 52  YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGS 111
           YKV L TP GE+ IECP+DTYILDAAE+AG+DLPYSCRAG+CS+CAGKV SG VDQSD S
Sbjct: 1   YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQS 60

Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           FL+D Q+  G+VLTCVAYPTSDVT+ TH++  +
Sbjct: 61  FLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1 Length = 95

 Score =  173 bits (440), Expect = 1e-57
 Identities = 59/93 (63%), Positives = 77/93 (82%)

Query: 52  YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGS 111
           YK  L TP GE  ++ P+ T ILDAAE+AG DLP+SCRAG+CS+C GKVVSGSVD+S+GS
Sbjct: 2   YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGS 61

Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           FL+D Q++ G+VLTC+A P SD+ +ETHK+EE+
Sbjct: 62  FLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ... Length = 98

 Score =  168 bits (427), Expect = 2e-55
 Identities = 69/97 (71%), Positives = 83/97 (85%), Gaps = 2/97 (2%)

Query: 50  ATYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ 107
           AT+KV LI      + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK+VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60

Query: 108 SDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           SD SFL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1 Length = 98

 Score =  167 bits (424), Expect = 4e-55
 Identities = 48/98 (48%), Positives = 71/98 (72%), Gaps = 2/98 (2%)

Query: 50  ATYKVKLITP--EGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ 107
           A+Y+V+LI    + +  IE  ++T ILD AE+ GI+LP+SC +GSCS+C GKVV G VDQ
Sbjct: 1   ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60

Query: 108 SDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
           SD  FL+D+Q+  G+ L CV YP S+ T++TH++  ++
Sbjct: 61  SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 98

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1 Length = 93

 Score =  162 bits (412), Expect = 2e-53
 Identities = 51/93 (54%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 52  YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGS 111
           YKV L TP+G+   +      ++D   +   DLP SC+AG+CSTC GK+VSG+VDQS+GS
Sbjct: 2   YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGS 60

Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           FL+D+QI+ GYVLTC+A P SDV +ETHK++E+
Sbjct: 61  FLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2 Length = 98

 Score =  149 bits (379), Expect = 3e-48
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 49  MATYKVKLITPEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ 107
              + +  +T +GE    EC  D  ++ AA    I L  SCR G C+TC      G  D 
Sbjct: 2   QRVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDL 61

Query: 108 SDGSF--LEDDQIDAGYVLTCVAYPTSDVTVE 137
              S   L  ++ + G VL C  YP +D+ +E
Sbjct: 62  KGCSVQALPPEEEEEGLVLLCRTYPKTDLEIE 93

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A Length = 128

 Score =  149 bits (379), Expect = 7e-48
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 47  IAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVD 106
           +      + L   E    +E  +  YIL+AAE  G D P+SCRAG+C+ CA  V+ G +D
Sbjct: 23  VFGEASDMDL-DDEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDID 81

Query: 107 QSDGSFLEDDQIDAGYV-LTCVAYPTSDVTVETHKDEEM 144
                 L D++++   V LTC+  P +D     +  + +
Sbjct: 82  MDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYNAKHL 120

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 99.0 bits (247), Expect = 5e-26
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 49  MATYKVKL-ITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ 107
           M+ ++V L       + I       + DAA    I++P  CR G C TC     SG+ D 
Sbjct: 1   MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDM 60

Query: 108 SDGSF----LEDDQIDAGYVLTCVAYPTSDVTVETHKDEE 143
            + ++    L  ++   GYVL C   PTSD   +     E
Sbjct: 61  PEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQASSE 100

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans} Length = 631

 Score = 97.2 bits (241), Expect = 2e-24
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 49  MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQ 107
           MA YKV    P+  +E+   ++T +++A   AGI++   C  AG+C  C  +VV G    
Sbjct: 1   MAEYKVL-FKPDQ-KEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRV 58

Query: 108 SDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
                L+ ++I  GYVL C  YP SD+ +E   D  +
Sbjct: 59  ESYGKLKQEEIAQGYVLACQTYPESDLIIEIPFDSRL 95

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321

 Score = 84.9 bits (211), Expect = 9e-21
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 63  QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGY 122
              E P +  IL+   DA + +P SC +G+C +C   + SG  D  D   L DD+     
Sbjct: 247 TSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRD-MVLRDDE-KGTQ 304

Query: 123 VLTCVAYPTSDVTV 136
           ++ CV+   S   V
Sbjct: 305 IMVCVSRAKSAELV 318

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3* Length = 783

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 63  QEIECPDDTYILDAAEDAGIDLPYSC------RAGSCSTCAGKVVSGSVDQSDGSFLEDD 116
           + +E P  T ++DA   AG D+P  C        G+C  C  ++            L + 
Sbjct: 9   RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEK 68

Query: 117 Q 117
            
Sbjct: 69  G 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	99.94
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	99.94
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	99.94
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	99.94
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	99.93
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	99.93
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	99.93
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	99.91
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	99.89
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.89
3lxf_A	104	Ferredoxin; iron, iron-sulfur, metal-binding, meta	99.88
3hui_A	126	Ferredoxin; cytochrome P450, electron transfer, ir	99.88
3ah7_A	113	[2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur	99.88
2y5c_A	109	Adrenodoxin-like protein, mitochondrial; electron	99.87
1xlq_A	106	Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored	99.87
2bt6_A	108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	99.87
1uwm_A	106	Ferredoxin VI, FDVI; electron transport, metal-bin	99.87
1b9r_A	105	Protein (terpredoxin); structure from molmol, ferr	99.86
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.86
1i7h_A	111	Ferredoxin; 2Fe-2S,electron transport; 1.70A {Esch	99.85
2wlb_A	103	ETP1-FD, electron transfer protein 1, mitochondria	99.85
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	99.85
1l5p_A	93	Ferredoxin; [2Fe-2S] cluster, electron transfer, i	99.81
3n9z_C	123	Adrenodoxin; cytochrome P450, 22-hydroxycholestero	99.8
3i9v_3	783	NADH-quinone oxidoreductase subunit 3; electron tr	98.96
1t3q_A	168	Quinoline 2-oxidoreductase small subunit; QOR, mol	98.86
1kf6_B	243	Fumarate reductase iron-sulfur protein; respiratio	98.77
3c8y_A	574	Iron hydrogenase 1; dithiomethylether, H-cluster,	98.7
2bs2_B	241	Quinol-fumarate reductase iron-sulfur subunit B; 2	98.62
3hrd_D	160	Nicotinate dehydrogenase small FES subunit; seleni	98.49
1rm6_C	161	4-hydroxybenzoyl-COA reductase gamma subunit; xant	98.45
1n62_A	166	Carbon monoxide dehydrogenase small chain; CODH, m	98.44
1ffv_A	163	CUTS, iron-sulfur protein of carbon monoxide dehyd	98.43
2wdq_B	238	Succinate dehydrogenase iron-sulfur subunit; succi	98.3
2h88_B	252	Succinate dehydrogenase IP subunit; complex II, me	98.14
3vr8_B	282	Iron-sulfur subunit of succinate dehydrogenase; me	97.77
3nvw_A	164	Xanthine dehydrogenase/oxidase; hydroxylase, homod	97.49
2w3s_A	462	Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2	97.46
1vlb_A	907	Aldehyde oxidoreductase; iron-sulphur cluster; HET	97.43
1dgj_A	907	Aldehyde oxidoreductase; beta half-barrel, four-he	97.3
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.59
3unc_A	1332	Xanthine dehydrogenase/oxidase; oxidoreductase; HE	95.86
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.17
3zyv_A	1335	AOH1; oxidoreductase, molybdenum cofactor; HET: MT	93.38
3u7z_A	101	Putative metal binding protein rumgna_00854; the b	86.15

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...

Probab=99.94  E-value=9.6e-27  Score=160.51  Aligned_cols=95  Identities=72%  Similarity=1.208  Sum_probs=87.9

Q ss_pred             eeEEEEECCCC--eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEe
Q 032230           51 TYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVA  128 (145)
Q Consensus        51 ~~~Vti~~~~~--~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~  128 (145)
                      .++|+|..+++  +++|++++|+|||++++++|+.+|+.|+.|.||+|+|+|++|.+++.+...|+++++++|+||+||+
T Consensus         2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~   81 (98)
T 1czp_A            2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVA   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred             ceEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeC
Confidence            47889875554  5899999999999999999999999999999999999999999998888889988888999999999


Q ss_pred             EECCCeEEEeCCCCCCC
Q 032230          129 YPTSDVTVETHKDEEMS  145 (145)
Q Consensus       129 ~~~~dl~I~~~~e~~l~  145 (145)
                      ++.+|++|+++++++||
T Consensus        82 ~~~~d~~v~~~~~~~~~   98 (98)
T 1czp_A           82 YPTSDVVIQTHKEEDLY   98 (98)
T ss_dssp             EESSCEEEECCCTTTTC
T ss_pred             EECCCEEEEeccccccC
Confidence            99999999999999987

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1

Probab=99.94  E-value=1.4e-26  Score=158.37  Aligned_cols=94  Identities=63%  Similarity=1.108  Sum_probs=86.5

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT  131 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  131 (145)
                      ++|+|..+++.++|++++|+|||++++++|+++|+.|+.|.||+|+|+|.+|.+++.+...|++++.++|+||+||+++.
T Consensus         2 ~~v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~~~   81 (95)
T 1frr_A            2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPE   81 (95)
T ss_dssp             EEEEEEETTEEEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES
T ss_pred             eEEEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECEEC
Confidence            67888634444789999999999999999999999999999999999999999998888899998889999999999999


Q ss_pred             CCeEEEeCCCCCCC
Q 032230          132 SDVTVETHKDEEMS  145 (145)
Q Consensus       132 ~dl~I~~~~e~~l~  145 (145)
                      +|++|++++++++|
T Consensus        82 ~~~~v~~~~~~~~~   95 (95)
T 1frr_A           82 SDLVIETHKEEELF   95 (95)
T ss_dssp             SCEEEECCCTTTTC
T ss_pred             CCEEEEEcchhhcC
Confidence            99999999999887

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1

Probab=99.94  E-value=8.3e-27  Score=159.70  Aligned_cols=94  Identities=71%  Similarity=1.225  Sum_probs=86.0

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT  131 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  131 (145)
                      |+|+|..+++.++|++++|+|||++++++|+.+|+.|+.|.||+|+|+|++|.+++.+...|+++++++|+||+||+++.
T Consensus         1 ~~v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~   80 (94)
T 1awd_A            1 YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPT   80 (94)
T ss_dssp             CEEEEEETTEEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES
T ss_pred             CEEEEEeCCCcEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEEC
Confidence            46777644544789999999999999999999999999999999999999999998888899988889999999999999


Q ss_pred             CCeEEEeCCCCCCC
Q 032230          132 SDVTVETHKDEEMS  145 (145)
Q Consensus       132 ~dl~I~~~~e~~l~  145 (145)
                      +|++|++++++++|
T Consensus        81 ~d~~i~~~~~~~~~   94 (94)
T 1awd_A           81 SDVTILTHQEAALY   94 (94)
T ss_dssp             SCEEEECCCGGGGC
T ss_pred             CCEEEEecchhccC
Confidence            99999999998887

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A

Probab=99.94  E-value=1e-26  Score=160.25  Aligned_cols=95  Identities=71%  Similarity=1.258  Sum_probs=86.9

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP  130 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  130 (145)
                      .++|+|..+++.++|++++|+|||++++++|+.+++.|+.|.||+|+|+|++|.+++.+...|+++++++|+||+||+++
T Consensus         2 ~~~v~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~   81 (97)
T 1a70_A            2 AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYP   81 (97)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEE
T ss_pred             eEEEEEEeCCceEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECEE
Confidence            47888864454478999999999999999999999999999999999999999999888889998888899999999999


Q ss_pred             CCCeEEEeCCCCCCC
Q 032230          131 TSDVTVETHKDEEMS  145 (145)
Q Consensus       131 ~~dl~I~~~~e~~l~  145 (145)
                      .+|++|++++++++|
T Consensus        82 ~~d~~v~~~~~~~~~   96 (97)
T 1a70_A           82 VSDVTIETHKKEELT   96 (97)
T ss_dssp             SSCEEEECCCGGGCC
T ss_pred             CCCEEEEeCchhhcc
Confidence            999999999988876

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1

Probab=99.93  E-value=1.1e-26  Score=160.25  Aligned_cols=95  Identities=53%  Similarity=1.039  Sum_probs=85.8

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP  130 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  130 (145)
                      .++|+|..+++.++|++++|+|||++++++|+.+|+.|+.|.||+|+|+|++|.+++.+...|+++++++|+||+||+++
T Consensus         2 ~~~v~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~   81 (98)
T 1iue_A            2 FYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYP   81 (98)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEE
T ss_pred             cEEEEEEeCCCeEEEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECEE
Confidence            47888875454478999999999999999999999999999999999999999999888889998888999999999999


Q ss_pred             CCCeEEEeCCCCCCC
Q 032230          131 TSDVTVETHKDEEMS  145 (145)
Q Consensus       131 ~~dl~I~~~~e~~l~  145 (145)
                      .+|++|++++++.+|
T Consensus        82 ~~d~~i~~~~~~~~~   96 (98)
T 1iue_A           82 KSDCVIETHKEDELH   96 (98)
T ss_dssp             SSCEEEECCCHHHHH
T ss_pred             CCCeEEEeCChHhhc
Confidence            999999998876554

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1

Probab=99.93  E-value=4.3e-26  Score=156.97  Aligned_cols=94  Identities=50%  Similarity=0.975  Sum_probs=86.2

Q ss_pred             eeEEEEECCCC--eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEe
Q 032230           51 TYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVA  128 (145)
Q Consensus        51 ~~~Vti~~~~~--~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~  128 (145)
                      .++|+|..+++  +++|++++|+|||++++++|+.+|+.|+.|.||+|+|+|++|.+++.+...|++++.++|+||+||+
T Consensus         2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~   81 (98)
T 1frd_A            2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred             ceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeEC
Confidence            47888875454  6899999999999999999999999999999999999999999998888899988888999999999


Q ss_pred             EECCCeEEEeCCCCCC
Q 032230          129 YPTSDVTVETHKDEEM  144 (145)
Q Consensus       129 ~~~~dl~I~~~~e~~l  144 (145)
                      ++.+|++|+++.+++|
T Consensus        82 ~~~~d~~v~~~~~~~~   97 (98)
T 1frd_A           82 YPRSNCTIKTHQEPYL   97 (98)
T ss_dssp             EESSSEEEECCCGGGC
T ss_pred             EECCCEEEEecchhhc
Confidence            9999999999988766

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1

Probab=99.93  E-value=5.5e-26  Score=155.42  Aligned_cols=92  Identities=55%  Similarity=1.044  Sum_probs=84.2

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT  131 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  131 (145)
                      ++|+|..+++.++|++++|+|||++++++| .+++.|+.|.||+|+|+|++|.+++.+...|++++.++||||+||+++.
T Consensus         2 ~~V~~~~~~~~~~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~~~   80 (93)
T 1wri_A            2 YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPE   80 (93)
T ss_dssp             EEEEEEETTEEEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES
T ss_pred             EEEEEEECCCeEEEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCEEC
Confidence            678886455457899999999999999999 9999999999999999999999998888899988889999999999999


Q ss_pred             CCeEEEeCCCCCC
Q 032230          132 SDVTVETHKDEEM  144 (145)
Q Consensus       132 ~dl~I~~~~e~~l  144 (145)
                      +|++|+++++++|
T Consensus        81 ~d~~v~~~~~~~~   93 (93)
T 1wri_A           81 SDVVIETHKEDEL   93 (93)
T ss_dssp             SCEEEECCCGGGC
T ss_pred             CCEEEEecccccC
Confidence            9999999988765

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2

Probab=99.91  E-value=6.7e-25  Score=151.11  Aligned_cols=91  Identities=30%  Similarity=0.539  Sum_probs=80.8

Q ss_pred             eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccC--CCCCCCChhcccCCeEEeEE
Q 032230           51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ--SDGSFLEDDQIDAGYVLTCV  127 (145)
Q Consensus        51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~--~e~~~L~~~~~~~g~rLaCq  127 (145)
                      +++|+|..+++ +++|++++|+|||++++++|+.+++.|+.|.||+|+|+|++|.+++  .+...|++.++++|+||+||
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaCq   83 (98)
T 1jq4_A            4 VHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCR   83 (98)
T ss_dssp             EEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTT
T ss_pred             cEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEee
Confidence            57888863333 6789999999999999999999999999999999999999999876  46678888888899999999


Q ss_pred             eEECCCeEEEeCCC
Q 032230          128 AYPTSDVTVETHKD  141 (145)
Q Consensus       128 ~~~~~dl~I~~~~e  141 (145)
                      +++.+|++|+++.+
T Consensus        84 ~~~~~d~~v~~~~~   97 (98)
T 1jq4_A           84 TYPKTDLEIELPYT   97 (98)
T ss_dssp             CCSSCCSEEECSCC
T ss_pred             CEECCCEEEEecCC
Confidence            99999999999764

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A

Probab=99.89  E-value=3.9e-24  Score=154.79  Aligned_cols=113  Identities=29%  Similarity=0.526  Sum_probs=88.1

Q ss_pred             CCCceeeeeccccCCCCCCcccceeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCc
Q 032230           26 MPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSV  105 (145)
Q Consensus        26 ~~~~~~e~F~~~~~~~~~~~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~  105 (145)
                      ...||+|.|+........++... ++++|+|. .++..++++++|+|||++++++|+++|+.|+.|.||+|+++|++|.+
T Consensus         3 ~~~~~~e~~~~~~~~~~~~~~f~-~m~~i~i~-~~g~~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v   80 (128)
T 1doi_A            3 VEYLNYEVVDDNGWDMYDDDVFG-EASDMDLD-DEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDI   80 (128)
T ss_dssp             EEEEEHHHHHHHTCCTTTSCHHH-HHHHSCCC-TTTEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCE
T ss_pred             eeEEEEEEecccccccccccccc-cccEEEEE-eCCcEEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCc
Confidence            34689999966553211111111 13455663 45533899999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCChhc-ccCCeEEeEEeEECCC-eEEEeCC
Q 032230          106 DQSDGSFLEDDQ-IDAGYVLTCVAYPTSD-VTVETHK  140 (145)
Q Consensus       106 ~~~e~~~L~~~~-~~~g~rLaCq~~~~~d-l~I~~~~  140 (145)
                      ++.+...|++++ .++|+||+||+++.+| ++|++..
T Consensus        81 ~~~e~~~L~~~e~~~~g~rLaCq~~~~~d~i~i~~~~  117 (128)
T 1doi_A           81 DMDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYNA  117 (128)
T ss_dssp             EECCCSSSCHHHHHTSCEEEGGGEEECSSEEEEEECG
T ss_pred             CchhhccCCHhHhccCCEEEEEEeEEcCCeEEEEecC
Confidence            888888898755 6899999999999999 8887643

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.89  E-value=4.4e-23  Score=167.35  Aligned_cols=106  Identities=27%  Similarity=0.540  Sum_probs=89.4

Q ss_pred             cCCCCceeeeeccccCCCCCCcccceeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeC
Q 032230           24 KAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSG  103 (145)
Q Consensus        24 ~~~~~~~~e~F~~~~~~~~~~~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G  103 (145)
                      ++..+||+|.|+++..... .    ...++|+|. +.+ ++|++++|+||||+++++|++++++|+.|.||+|+++|++|
T Consensus       215 ~~~~~i~~E~F~~~~~~~~-~----~~~~~v~~~-~~~-~~~~~~~~~~ll~a~~~~g~~~~~~C~~G~Cg~C~~~v~~G  287 (321)
T 2pia_A          215 WPSGTVHFESFGATNTNAR-E----NTPFTVRLS-RSG-TSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSG  287 (321)
T ss_dssp             SCTTCEEEECCCCCCCCCS-C----CCCEEEEET-TTC-CEEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEES
T ss_pred             CCHhhEEEEecCCCCCCCC-C----CccEEEEEe-CCC-eEEEECCCCcHHHHHHHcCCCCCCCCCCCCCCCCEEEEecC
Confidence            6688999999987642111 1    235889985 344 58999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCChhcccCCeEEeEEeEECCC-eEEEe
Q 032230          104 SVDQSDGSFLEDDQIDAGYVLTCVAYPTSD-VTVET  138 (145)
Q Consensus       104 ~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d-l~I~~  138 (145)
                      ++++.+ ..|++++. +|++|+||+++.+| ++|++
T Consensus       288 ~~~~~~-~~l~~~e~-~g~~L~C~~~~~~d~~~i~l  321 (321)
T 2pia_A          288 EADHRD-MVLRDDEK-GTQIMVCVSRAKSAELVLDL  321 (321)
T ss_dssp             CEECCC-SSCCTTTT-TTEEETTTCEESSSEEEECC
T ss_pred             cccccc-CCCChHHH-CCeEEEeEeEECCCcEEEeC
Confidence            999876 57888777 99999999999998 88864

>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0

Probab=99.88  E-value=5.4e-24  Score=148.70  Aligned_cols=90  Identities=27%  Similarity=0.448  Sum_probs=77.9

Q ss_pred             EEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCccCC------CCCCCCh-hcccCCe
Q 032230           53 KVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVDQS------DGSFLED-DQIDAGY  122 (145)
Q Consensus        53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~~-~~~~~g~  122 (145)
                      +|+|..++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|++|.++..      |...|+. +++++||
T Consensus         2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g~   81 (104)
T 3lxf_A            2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPHS   81 (104)
T ss_dssp             EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTTE
T ss_pred             EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCCc
Confidence            678876666 5789999999999999999999 999999 9999999999999976531      3345665 6788999


Q ss_pred             EEeEEeEECCC---eEEEeCCCC
Q 032230          123 VLTCVAYPTSD---VTVETHKDE  142 (145)
Q Consensus       123 rLaCq~~~~~d---l~I~~~~e~  142 (145)
                      ||+||+++.+|   ++|++|+++
T Consensus        82 rLaCq~~~~~dl~gl~v~ip~~~  104 (104)
T 3lxf_A           82 RLSCQITINDKLEGLEVEIAPED  104 (104)
T ss_dssp             EEGGGCBCCGGGTTCEEEECCCC
T ss_pred             EEEeeCEEccCCCCEEEEecCCC
Confidence            99999999998   999999764

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}

Probab=99.88  E-value=9.1e-24  Score=152.57  Aligned_cols=95  Identities=18%  Similarity=0.344  Sum_probs=80.6

Q ss_pred             eeeeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCcc------CCCCCCCC-hhcc
Q 032230           49 MATYKVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVD------QSDGSFLE-DDQI  118 (145)
Q Consensus        49 m~~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~------~~e~~~L~-~~~~  118 (145)
                      ..|++|+|..+++ .++|++++|+|||++++++||+ +++.|+ .|.||+|+|+|++|+++      ..|...|+ .+++
T Consensus        19 ~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~~e~   98 (126)
T 3hui_A           19 SHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDV   98 (126)
T ss_dssp             CSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTSSSC
T ss_pred             CCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCchhhc
Confidence            4568999985555 4789999999999999999999 999998 99999999999999743      12344676 3678


Q ss_pred             cCCeEEeEEeEECCC---eEEEeCCCCC
Q 032230          119 DAGYVLTCVAYPTSD---VTVETHKDEE  143 (145)
Q Consensus       119 ~~g~rLaCq~~~~~d---l~I~~~~e~~  143 (145)
                      ++||||+||+++.+|   ++|++|+++.
T Consensus        99 ~~g~RLaCQ~~~~~dldgl~V~lp~~~r  126 (126)
T 3hui_A           99 RPNSRLSCQIKVSNELDGLIVTTPERQR  126 (126)
T ss_dssp             CTTEEEGGGCBCCGGGTTEEEECCSCCC
T ss_pred             cCCeEEeeeCEECcCCCcEEEEecCcCC
Confidence            899999999999998   9999998753

>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}

Probab=99.88  E-value=8.7e-23  Score=143.89  Aligned_cols=92  Identities=25%  Similarity=0.393  Sum_probs=75.9

Q ss_pred             eEEEEECCC----CeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCC-----CCCCCChh-cccC
Q 032230           52 YKVKLITPE----GEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQS-----DGSFLEDD-QIDA  120 (145)
Q Consensus        52 ~~Vti~~~~----~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~-----e~~~L~~~-~~~~  120 (145)
                      ++|+|...+    .+++|++++|+|||++++++||+||+.|+ .|.||+|+|+|++|.....     +...|+.. ++++
T Consensus         2 ~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~~   81 (113)
T 3ah7_A            2 PLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLEA   81 (113)
T ss_dssp             CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCCT
T ss_pred             CEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccCC
Confidence            578886433    24789999999999999999999999998 7999999999999974432     22346654 6788


Q ss_pred             CeEEeEEeEEC-CCeEEEeCCCCC
Q 032230          121 GYVLTCVAYPT-SDVTVETHKDEE  143 (145)
Q Consensus       121 g~rLaCq~~~~-~dl~I~~~~e~~  143 (145)
                      |+||+||+++. +|++|+++.++.
T Consensus        82 g~rLaCq~~~~~~dl~v~~~~~~~  105 (113)
T 3ah7_A           82 QSRLGCQVFVADEDLTIEIPKYSL  105 (113)
T ss_dssp             TEEEGGGCBCCSSCEEEECCSCCC
T ss_pred             CcEEeeeCEEeCCCEEEEECchhh
Confidence            99999999998 899999987643

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}

Probab=99.87  E-value=1.6e-23  Score=147.01  Aligned_cols=92  Identities=21%  Similarity=0.310  Sum_probs=76.1

Q ss_pred             eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCC------CCCCCCh-hcccCC
Q 032230           51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQS------DGSFLED-DQIDAG  121 (145)
Q Consensus        51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~~-~~~~~g  121 (145)
                      +++|+|..+++ .++|++++|+|||++++++||++|+.|+ .|.||+|+|+|.+|.++..      |...|+. .++++|
T Consensus         5 m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g   84 (109)
T 2y5c_A            5 VVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQEN   84 (109)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCCTT
T ss_pred             cEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCCCC
Confidence            57899875555 4579999999999999999999999999 5999999999999964431      2345553 567899


Q ss_pred             eEEeEEeEECCC---eEEEeCCCC
Q 032230          122 YVLTCVAYPTSD---VTVETHKDE  142 (145)
Q Consensus       122 ~rLaCq~~~~~d---l~I~~~~e~  142 (145)
                      |||+||+++.+|   ++|++++++
T Consensus        85 ~rLaCq~~~~~d~~~~~v~ip~~~  108 (109)
T 2y5c_A           85 SRLGCQIVLTPELEGAEFTLPKIT  108 (109)
T ss_dssp             EEEGGGCBCCGGGTTCEEECCSCC
T ss_pred             cEeeEEeEEecCCCeEEEEecCCC
Confidence            999999999986   999998654

>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A

Probab=99.87  E-value=4e-23  Score=144.04  Aligned_cols=90  Identities=24%  Similarity=0.406  Sum_probs=74.1

Q ss_pred             EEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCcc------CCCCCCCChhc-c-cCC
Q 032230           53 KVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVD------QSDGSFLEDDQ-I-DAG  121 (145)
Q Consensus        53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~------~~e~~~L~~~~-~-~~g  121 (145)
                      +|+|..+++ .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|++|..+      ..+...|+..+ . ++|
T Consensus         2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g   81 (106)
T 1xlq_A            2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence            678854444 4789999999999999999999 999996 89999999999999543      22334566554 6 889


Q ss_pred             eEEeEEeEECC---CeEEEeCCCC
Q 032230          122 YVLTCVAYPTS---DVTVETHKDE  142 (145)
Q Consensus       122 ~rLaCq~~~~~---dl~I~~~~e~  142 (145)
                      +||+||+++.+   |++|+++.++
T Consensus        82 ~rLaCq~~~~~d~~~l~v~~p~~~  105 (106)
T 1xlq_A           82 SRLCCQIIMTPELDGIVVDVPDRQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             cEeeeeeEeecCCCCEEEEecCcc
Confidence            99999999998   6999998764

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*

Probab=99.87  E-value=3.9e-23  Score=144.66  Aligned_cols=89  Identities=19%  Similarity=0.295  Sum_probs=73.9

Q ss_pred             eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCC--CCCC-CccccCCeEEEEeCCccC------CCCCCCCh-hccc
Q 032230           51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLP--YSCR-AGSCSTCAGKVVSGSVDQ------SDGSFLED-DQID  119 (145)
Q Consensus        51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~--~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~~~  119 (145)
                      +++|+|..+++ .++|++++|+|||++++++||+|+  +.|+ .|.||+|+|+|.+|.++.      .|...|+. .+++
T Consensus         6 m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~   85 (108)
T 2bt6_A            6 KITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT   85 (108)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCC
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCcccCC
Confidence            57899874554 568999999999999999999999  9998 699999999999995432      13345664 5678


Q ss_pred             CCeEEeEEeEECC---CeEEEeC
Q 032230          120 AGYVLTCVAYPTS---DVTVETH  139 (145)
Q Consensus       120 ~g~rLaCq~~~~~---dl~I~~~  139 (145)
                      +||||+||+++.+   |++|++|
T Consensus        86 ~g~rLaCq~~~~~d~d~~~V~~p  108 (108)
T 2bt6_A           86 DRSRLGCQICLTKAMDNMTVRVP  108 (108)
T ss_dssp             TTEEEGGGCBCCGGGTTEEEECC
T ss_pred             CCcEeeEEEEecCCCCCEEEEcC
Confidence            9999999999998   5999875

>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A

Probab=99.87  E-value=4.7e-23  Score=143.65  Aligned_cols=90  Identities=28%  Similarity=0.464  Sum_probs=74.5

Q ss_pred             EEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCccC------CCCCCCChh-ccc-CC
Q 032230           53 KVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVDQ------SDGSFLEDD-QID-AG  121 (145)
Q Consensus        53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~~-~~~-~g  121 (145)
                      +|+|..+++ .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|++|.++.      .+...|+.. +++ +|
T Consensus         2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g   81 (106)
T 1uwm_A            2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPAT   81 (106)
T ss_dssp             EEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTT
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCCC
Confidence            678854454 3789999999999999999999 999996 899999999999995432      233466665 577 89


Q ss_pred             eEEeEEeEECC---CeEEEeCCCC
Q 032230          122 YVLTCVAYPTS---DVTVETHKDE  142 (145)
Q Consensus       122 ~rLaCq~~~~~---dl~I~~~~e~  142 (145)
                      +||+||+++.+   +++|+++.++
T Consensus        82 ~rLaCq~~~~~d~~~l~v~~p~~~  105 (106)
T 1uwm_A           82 SRLTCQIKVTSLLDGLVVHLPEKQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             cEecccCEEccCCCCEEEEecCCC
Confidence            99999999998   6999998764

>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1

Probab=99.86  E-value=2e-23  Score=145.31  Aligned_cols=89  Identities=18%  Similarity=0.436  Sum_probs=74.6

Q ss_pred             EEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCC------ccCCCCCCCC--hhcccCC
Q 032230           53 KVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGS------VDQSDGSFLE--DDQIDAG  121 (145)
Q Consensus        53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~------~~~~e~~~L~--~~~~~~g  121 (145)
                      +|+|..+++ .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|.      ++..+...|+  ..++++|
T Consensus         2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~g   81 (105)
T 1b9r_A            2 RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAG   81 (105)
T ss_dssp             EEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTT
T ss_pred             EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence            678843444 4789999999999999999999 999999 799999999999994      3333445676  5678899


Q ss_pred             eEEeEEeEECC---CeEEEeCCC
Q 032230          122 YVLTCVAYPTS---DVTVETHKD  141 (145)
Q Consensus       122 ~rLaCq~~~~~---dl~I~~~~e  141 (145)
                      |||+||+++.+   |++|+++.+
T Consensus        82 ~rLaCq~~~~~~~~~l~v~~p~~  104 (105)
T 1b9r_A           82 TRLSCQVFIDPSMDGLIVRVPLP  104 (105)
T ss_dssp             BSCGGGCCCCTTSTTEEEECCSC
T ss_pred             cEeeeeCEecCCCCcEEEEecCC
Confidence            99999999998   799999864

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.86  E-value=8.4e-22  Score=160.15  Aligned_cols=93  Identities=30%  Similarity=0.475  Sum_probs=82.4

Q ss_pred             eeeeEEEEECCC-CeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccC----CCCCCCChhcccCCeE
Q 032230           49 MATYKVKLITPE-GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ----SDGSFLEDDQIDAGYV  123 (145)
Q Consensus        49 m~~~~Vti~~~~-~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~----~e~~~L~~~~~~~g~r  123 (145)
                      |++++|+|...+ .+++|++++|+||||+++++|+++++.|+.|.||+|+|+|++|+++.    .+...|+++++++|+|
T Consensus         1 m~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~   80 (338)
T 1krh_A            1 MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYV   80 (338)
T ss_dssp             -CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEE
T ss_pred             CCceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeE
Confidence            557899997433 36789999999999999999999999999999999999999998876    3677899888999999


Q ss_pred             EeEEeEECCCeEEEeCCC
Q 032230          124 LTCVAYPTSDVTVETHKD  141 (145)
Q Consensus       124 LaCq~~~~~dl~I~~~~e  141 (145)
                      |+||+++.+|++|+++.+
T Consensus        81 LaCq~~~~~~~~v~~~~~   98 (338)
T 1krh_A           81 LACQCRPTSDAVFQIQAS   98 (338)
T ss_dssp             ETTTCEESSSEEEEESSC
T ss_pred             EEEeCEECCCeEEEEecc
Confidence            999999999999999765

>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1

Probab=99.85  E-value=9e-22  Score=138.39  Aligned_cols=91  Identities=25%  Similarity=0.405  Sum_probs=73.8

Q ss_pred             eEEEEECCC----CeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCCCC-----CCCCh-hcccC
Q 032230           52 YKVKLITPE----GEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQSDG-----SFLED-DQIDA  120 (145)
Q Consensus        52 ~~Vti~~~~----~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~-----~~L~~-~~~~~  120 (145)
                      ++|+|..++    .+++|++++|+|||++++++|+.+|+.|+ .|.||+|+|+|++|.+.+...     ..|+. .+..+
T Consensus         2 ~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~~   81 (111)
T 1i7h_A            2 PKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEP   81 (111)
T ss_dssp             CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCT
T ss_pred             CEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccCC
Confidence            577776432    24789999999999999999999999995 999999999999998776432     22332 24568


Q ss_pred             CeEEeEEeEEC-CCeEEEeCCCC
Q 032230          121 GYVLTCVAYPT-SDVTVETHKDE  142 (145)
Q Consensus       121 g~rLaCq~~~~-~dl~I~~~~e~  142 (145)
                      |+||+||+++. +|++|+++.++
T Consensus        82 g~rLaCq~~~~~~dl~v~~~~~~  104 (111)
T 1i7h_A           82 ESRLSCQARVTDEDLVVEIPRYT  104 (111)
T ss_dssp             TEEETTTCBCCSSCEEEECCSCC
T ss_pred             CcEEEEEEEEeCCCEEEEEChHH
Confidence            99999999996 89999998654

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}

Probab=99.85  E-value=4.8e-22  Score=137.87  Aligned_cols=89  Identities=30%  Similarity=0.405  Sum_probs=74.2

Q ss_pred             eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCC------CCCCCCh-hcccCC
Q 032230           51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQS------DGSFLED-DQIDAG  121 (145)
Q Consensus        51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~~-~~~~~g  121 (145)
                      .++|+|..+++ .++|++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|.+++.      |...|+. .+.++|
T Consensus         3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~g   82 (103)
T 2wlb_A            3 GIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEET   82 (103)
T ss_dssp             CEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCTT
T ss_pred             ceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCCC
Confidence            36888873344 4789999999999999999999999999 8999999999999976543      2224554 457889


Q ss_pred             eEEeEEeEECCC---eEEEeC
Q 032230          122 YVLTCVAYPTSD---VTVETH  139 (145)
Q Consensus       122 ~rLaCq~~~~~d---l~I~~~  139 (145)
                      +||+||+++.+|   ++|++|
T Consensus        83 ~rLaCq~~~~~d~~~l~v~lp  103 (103)
T 2wlb_A           83 SRLGCQVLLRKDLDGIRVRIP  103 (103)
T ss_dssp             EEEGGGCBCCGGGTTEEEECC
T ss_pred             cEeeEeeEeCCCCCcEEEEcC
Confidence            999999999999   999875

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=99.85  E-value=2e-21  Score=171.01  Aligned_cols=94  Identities=35%  Similarity=0.673  Sum_probs=85.9

Q ss_pred             eeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEE
Q 032230           49 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCV  127 (145)
Q Consensus        49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq  127 (145)
                      |.|++|+|. +++ ++|++++|+|||++++++|++++++|+ .|.||+|+++|++|++++.+...|+++++++|+||+||
T Consensus         1 M~m~~V~~~-~sg-~~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaCq   78 (631)
T 3zyy_X            1 MAEYKVLFK-PDQ-KEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLACQ   78 (631)
T ss_dssp             --CEEEEEE-TTT-EEEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETTT
T ss_pred             CCceEEEEe-cCC-eEEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEeee
Confidence            567999997 454 689999999999999999999999999 99999999999999999888888999899999999999


Q ss_pred             eEECCCeEEEeCCCCCC
Q 032230          128 AYPTSDVTVETHKDEEM  144 (145)
Q Consensus       128 ~~~~~dl~I~~~~e~~l  144 (145)
                      +++.+|++|+++.++++
T Consensus        79 a~~~sDl~Ielp~~~~~   95 (631)
T 3zyy_X           79 TYPESDLIIEIPFDSRL   95 (631)
T ss_dssp             EEECSSEEEECCTTSSC
T ss_pred             CEECCCEEEEecchhhh
Confidence            99999999999988764

>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1

Probab=99.81  E-value=1.7e-20  Score=128.08  Aligned_cols=82  Identities=23%  Similarity=0.447  Sum_probs=66.7

Q ss_pred             EEEECCCCeEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCccCC---CCCCCChhcccCCeEEeEEe
Q 032230           54 VKLITPEGEQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVDQS---DGSFLEDDQIDAGYVLTCVA  128 (145)
Q Consensus        54 Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~---e~~~L~~~~~~~g~rLaCq~  128 (145)
                      |+|...+..++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|.+.+.   +...|+  +.++|+||+||+
T Consensus         3 v~i~~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~--~~~~g~rLaCq~   80 (93)
T 1l5p_A            3 ITAVKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE--DQPANARLACAI   80 (93)
T ss_dssp             EEEEETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT--TSCTTEEEGGGC
T ss_pred             EEEEeCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc--CCCCCcEEeeEC
Confidence            444422335689999999999999999999 999999 9999999999999987643   334555  678999999999


Q ss_pred             EECCC---eEEE
Q 032230          129 YPTSD---VTVE  137 (145)
Q Consensus       129 ~~~~d---l~I~  137 (145)
                      ++.+|   ++|+
T Consensus        81 ~~~~d~~g~~v~   92 (93)
T 1l5p_A           81 TLSGENDGAVFE   92 (93)
T ss_dssp             EECGGGTTCEEE
T ss_pred             EECCCCCceEEE
Confidence            99886   4554

>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A

Probab=99.80  E-value=1.2e-21  Score=140.92  Aligned_cols=94  Identities=18%  Similarity=0.264  Sum_probs=20.0

Q ss_pred             eeeeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCC--CCCC-CccccCCeEEEEeCCcc-C-----CCCCCCCh-hc
Q 032230           49 MATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLP--YSCR-AGSCSTCAGKVVSGSVD-Q-----SDGSFLED-DQ  117 (145)
Q Consensus        49 m~~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~--~~C~-~G~CgtC~v~v~~G~~~-~-----~e~~~L~~-~~  117 (145)
                      +.+++|+|..++| .++|++++|+|||++++++||+++  +.|+ .|.||+|+|+|.+|..+ .     .|..+|+. .+
T Consensus         3 ~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~~   82 (123)
T 3n9z_C            3 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYG   82 (123)
T ss_dssp             ----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC---
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhccccc
Confidence            4568899876655 568999999999999999999999  9998 89999999999975322 1     13345553 45


Q ss_pred             ccCCeEEeEEeEECC---CeEEEeCCCC
Q 032230          118 IDAGYVLTCVAYPTS---DVTVETHKDE  142 (145)
Q Consensus       118 ~~~g~rLaCq~~~~~---dl~I~~~~e~  142 (145)
                      +.+++||+||+++.+   |++|++|.+.
T Consensus        83 ~~~~~RLaCQ~~v~~~ld~l~V~ip~~~  110 (123)
T 3n9z_C           83 LTDRSRLGCQICLTKSMDNMTVRVPETV  110 (123)
T ss_dssp             -----CBCC-------------------
T ss_pred             ccCCeEEeeEeEEccCCCCEEEEECccc
Confidence            778999999999998   7999998764

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*

Probab=98.96  E-value=6.2e-10  Score=100.02  Aligned_cols=86  Identities=24%  Similarity=0.463  Sum_probs=60.7

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCC------CCccccCCeEEEEeCCccCCCCCCCChhc-----ccC
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSC------RAGSCSTCAGKVVSGSVDQSDGSFLEDDQ-----IDA  120 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C------~~G~CgtC~v~v~~G~~~~~e~~~L~~~~-----~~~  120 (145)
                      ++|+|   +| +++++++|+|||++++++|+.||+.|      ..|.|+.|.|+|..+..+......++++.     ...
T Consensus         2 v~i~i---dg-~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~   77 (783)
T 3i9v_3            2 VRVKV---ND-RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQP   77 (783)
T ss_dssp             EEEEC---SS-CEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCS
T ss_pred             eEEEE---CC-EEEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCC
Confidence            56666   34 57999999999999999999999999      58999999999953322111111111110     124


Q ss_pred             CeEEeEEeEECCCeEEEeCCC
Q 032230          121 GYVLTCVAYPTSDVTVETHKD  141 (145)
Q Consensus       121 g~rLaCq~~~~~dl~I~~~~e  141 (145)
                      +.+++|++.+..+|+|++..+
T Consensus        78 ~~~~aC~t~v~~gm~v~t~~~   98 (783)
T 3i9v_3           78 KLAASCVTAVADGMVVDTLSD   98 (783)
T ss_dssp             SCEETTTCBCCSSEEEESSSH
T ss_pred             CcccccCCCCCCCCEEEECCH
Confidence            678999999999999998643

>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2

Probab=98.86  E-value=3.7e-09  Score=79.07  Aligned_cols=67  Identities=15%  Similarity=0.382  Sum_probs=51.3

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHc-CCC-CCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEe
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDA-GID-LPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVA  128 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi~-i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~  128 (145)
                      .++|+|+  +..+++++++|+|||++|+++ |+. ++++|+.|.||+|.|.| +|.                 .+++|..
T Consensus        11 ~i~~~in--g~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v-dG~-----------------~v~sC~~   70 (168)
T 1t3q_A           11 RISATIN--GKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGA-----------------PMRSCLT   70 (168)
T ss_dssp             EEEEEET--TEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGS
T ss_pred             eEEEEEC--CEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE-CCC-----------------Eeechhh
Confidence            3566662  335677789999999999996 997 89999999999999998 542                 3677777


Q ss_pred             EECC--CeEEE
Q 032230          129 YPTS--DVTVE  137 (145)
Q Consensus       129 ~~~~--dl~I~  137 (145)
                      .+..  +..|.
T Consensus        71 ~~~~~~G~~v~   81 (168)
T 1t3q_A           71 LAVQAEGCSIE   81 (168)
T ss_dssp             BGGGGTTCEEE
T ss_pred             HHHHhCCCeEE
Confidence            6654  44444

>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*

Probab=98.77  E-value=8e-09  Score=80.51  Aligned_cols=58  Identities=26%  Similarity=0.410  Sum_probs=47.8

Q ss_pred             EEEEecCCCcHHHHHHHcCC------CCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECCC---
Q 032230           63 QEIECPDDTYILDAAEDAGI------DLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSD---  133 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~~Gi------~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d---  133 (145)
                      +++++++|+|||++|++.|+      ...++|+.|.||+|.|+| +|.                 .+|+|++.+...   
T Consensus        26 ~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v-~G~-----------------~~~aC~~~~~~~~~~   87 (243)
T 1kf6_B           26 YEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV-----------------PKLACKTFLRDYTDG   87 (243)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTE-----------------EEEGGGCBGGGCTTC
T ss_pred             EEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE-CCE-----------------EEeeeeeEHhhCCCc
Confidence            67888999999999999983      467789999999999996 553                 388999888776   


Q ss_pred             eEEEe
Q 032230          134 VTVET  138 (145)
Q Consensus       134 l~I~~  138 (145)
                      ++|+-
T Consensus        88 ~~i~~   92 (243)
T 1kf6_B           88 MKVEA   92 (243)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77753

>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*

Probab=98.70  E-value=1.9e-08  Score=87.61  Aligned_cols=68  Identities=25%  Similarity=0.489  Sum_probs=57.3

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-------CccccCCeEEEEeCCccCCCCCCCChhcccCCeEE
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVL  124 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL  124 (145)
                      ++|+|   +| +++++++|+|||++++++|+.+|+.|+       .|.||.|.|+| +|.               . .++
T Consensus         2 v~~~i---ng-~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v-~g~---------------~-~~~   60 (574)
T 3c8y_A            2 KTIII---NG-VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EGT---------------G-LVT   60 (574)
T ss_dssp             EEEEE---TT-EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TTT---------------E-EEE
T ss_pred             eEEEE---CC-EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEe-CCC---------------c-ccc
Confidence            45666   34 679999999999999999999999998       89999999998 221               2 789


Q ss_pred             eEEeEECCCeEEEeCC
Q 032230          125 TCVAYPTSDVTVETHK  140 (145)
Q Consensus       125 aCq~~~~~dl~I~~~~  140 (145)
                      +|++.+.++++|.+..
T Consensus        61 aC~t~v~~gm~V~T~~   76 (574)
T 3c8y_A           61 ACDTLIEDGMIINTNS   76 (574)
T ss_dssp             GGGCBCCTTCEEESSC
T ss_pred             cCCCCcccceeEEecc
Confidence            9999999999998654

>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*

Probab=98.62  E-value=4e-08  Score=76.53  Aligned_cols=52  Identities=23%  Similarity=0.489  Sum_probs=41.9

Q ss_pred             EEEEecCCCcHHHHHHHcC------CCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECC
Q 032230           63 QEIECPDDTYILDAAEDAG------IDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTS  132 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~~G------i~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~  132 (145)
                      +++++++|+||||+|++.|      +...++|+.|.||+|.|+| +|..                 +|+|++.+..
T Consensus        26 ~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i-~G~~-----------------~~aC~~~~~~   83 (241)
T 2bs2_B           26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGRP-----------------SLACRTLTKD   83 (241)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTEE-----------------EEGGGCBGGG
T ss_pred             EEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE-CCCe-----------------ecchhCcHhH
Confidence            5677889999999999864      4567799999999999999 6643                 4788877654

>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}

Probab=98.49  E-value=2.6e-07  Score=68.77  Aligned_cols=47  Identities=19%  Similarity=0.461  Sum_probs=39.1

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEE
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v  100 (145)
                      ++++|  ++..++++++++++||++|++. |+ ..+++|+.|.||.|.|.|
T Consensus         6 i~~~v--NG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~v   54 (160)
T 3hrd_D            6 INLNL--NGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF   54 (160)
T ss_dssp             EEEEE--TTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEE
T ss_pred             EEEEE--CCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEE
Confidence            44554  3335678899999999999985 87 689999999999999998

>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*

Probab=98.45  E-value=3.2e-07  Score=68.16  Aligned_cols=61  Identities=23%  Similarity=0.486  Sum_probs=46.7

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeE
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAY  129 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~  129 (145)
                      ++++|  ++..++++++++++||++|++. |+ ..+++|+.|.||.|.|.| +|.                 .+++|+..
T Consensus         5 i~~~v--NG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~v-dG~-----------------~v~sC~~~   64 (161)
T 1rm6_C            5 LRLTL--NGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR-----------------PRLACSTL   64 (161)
T ss_dssp             EEEEE--TTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE-----------------EEEGGGSB
T ss_pred             EEEEE--CCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEE-CCc-----------------EEechHHH
Confidence            45555  3335567778999999999986 76 589999999999999998 442                 36777776


Q ss_pred             ECC
Q 032230          130 PTS  132 (145)
Q Consensus       130 ~~~  132 (145)
                      +..
T Consensus        65 ~~~   67 (161)
T 1rm6_C           65 AHQ   67 (161)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            654

>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*

Probab=98.44  E-value=4.5e-07  Score=67.80  Aligned_cols=47  Identities=11%  Similarity=0.308  Sum_probs=38.3

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEE
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v  100 (145)
                      ++++|  ++..++++++++++||++|++. |+ ..+++|+.|.||.|.|.|
T Consensus         6 i~~~v--NG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v   54 (166)
T 1n62_A            6 IELTI--NGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL   54 (166)
T ss_dssp             EEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE
T ss_pred             EEEEE--CCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE
Confidence            45555  3445677889999999999984 66 479999999999999998

>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*

Probab=98.43  E-value=5.3e-07  Score=67.23  Aligned_cols=47  Identities=15%  Similarity=0.368  Sum_probs=38.2

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEE
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v  100 (145)
                      ++++|  ++..++++++++++||++|++. |+ ..+++|+.|.||.|.|.|
T Consensus         6 i~~~v--NG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v   54 (163)
T 1ffv_A            6 ITVNV--NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI   54 (163)
T ss_dssp             EEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE
T ss_pred             EEEEE--CCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE
Confidence            45555  3345677889999999999984 66 479999999999999998

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*

Probab=98.30  E-value=4.5e-07  Score=70.29  Aligned_cols=41  Identities=27%  Similarity=0.509  Sum_probs=35.2

Q ss_pred             EEEEecC--CCcHHHHHHHcC-----CCCCCCCCCccccCCeEEEEeCC
Q 032230           63 QEIECPD--DTYILDAAEDAG-----IDLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        63 ~~~~v~~--g~tLLeal~~~G-----i~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      +++++++  |+|||++|++.|     +...++|+.|.||+|.|+| +|.
T Consensus        23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~   70 (238)
T 2wdq_B           23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK   70 (238)
T ss_dssp             EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE-TTE
T ss_pred             EEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE-CCE
Confidence            5677888  999999999987     5678899999999999998 443

>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...

Probab=98.14  E-value=1.7e-06  Score=67.83  Aligned_cols=57  Identities=25%  Similarity=0.505  Sum_probs=43.5

Q ss_pred             EEEEecC-CCcHHHHHHHcC------CCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEECC---
Q 032230           63 QEIECPD-DTYILDAAEDAG------IDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTS---  132 (145)
Q Consensus        63 ~~~~v~~-g~tLLeal~~~G------i~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~---  132 (145)
                      +++++++ |+||||+|++.|      +...++|+.|.||+|.|+| +|.                 .+|+|++.+..   
T Consensus        33 ~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i-~G~-----------------~~~aC~~~~~~~~g   94 (252)
T 2h88_B           33 YEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNI-AGG-----------------NTLACTKKIDPDLS   94 (252)
T ss_dssp             EEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGSBCCCCTT
T ss_pred             EEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-CCc-----------------EEccccCCHhHcCC
Confidence            4567777 999999999986      2356689999999999996 443                 47888887764   


Q ss_pred             -CeEEE
Q 032230          133 -DVTVE  137 (145)
Q Consensus       133 -dl~I~  137 (145)
                       .++|+
T Consensus        95 ~~~~ie  100 (252)
T 2h88_B           95 KTTKIY  100 (252)
T ss_dssp             SCEEEE
T ss_pred             CceEEe
Confidence             25555

>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*

Probab=97.77  E-value=3.7e-05  Score=61.72  Aligned_cols=41  Identities=29%  Similarity=0.576  Sum_probs=32.5

Q ss_pred             EEEEecC-CCcHHHHHHHcCC------CCCCCCCCccccCCeEEEEeCC
Q 032230           63 QEIECPD-DTYILDAAEDAGI------DLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        63 ~~~~v~~-g~tLLeal~~~Gi------~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      +++++++ |+|||++|++.+.      ....+|+.|.||+|.|.| +|.
T Consensus        57 ~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I-nG~  104 (282)
T 3vr8_B           57 FDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNI-AGE  104 (282)
T ss_pred             EEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEE-CCE
Confidence            5567777 9999999998654      345789999999999987 443

>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*

Probab=97.49  E-value=9.7e-05  Score=55.01  Aligned_cols=48  Identities=17%  Similarity=0.319  Sum_probs=37.9

Q ss_pred             eEEEEECCCCeE-EEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEE
Q 032230           52 YKVKLITPEGEQ-EIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVV  101 (145)
Q Consensus        52 ~~Vti~~~~~~~-~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~  101 (145)
                      ++++|+  +..+ +++++++++||++|++. |+ ....+|+.|.||.|.|.|-
T Consensus         5 i~~~vN--G~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd   55 (164)
T 3nvw_A            5 LVFFVN--GKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS   55 (164)
T ss_dssp             EEEEET--TEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred             EEEEEC--CEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEc
Confidence            556662  2222 34688999999999985 87 6899999999999999985

>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*

Probab=97.46  E-value=0.00016  Score=61.64  Aligned_cols=47  Identities=15%  Similarity=0.330  Sum_probs=37.9

Q ss_pred             eEEEEECCCCeEEE-EecCCCcHHHHHHHcCC-CCCCCCCCccccCCeEEE
Q 032230           52 YKVKLITPEGEQEI-ECPDDTYILDAAEDAGI-DLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        52 ~~Vti~~~~~~~~~-~v~~g~tLLeal~~~Gi-~i~~~C~~G~CgtC~v~v  100 (145)
                      +++++  ++..+++ +++++++||++|++.|+ ....+|+.|.||.|.|.|
T Consensus         3 ~~~~v--Ng~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~G~CGaCtV~v   51 (462)
T 2w3s_A            3 IAFLL--NGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMI   51 (462)
T ss_dssp             EEEEE--TTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEE
T ss_pred             EEEEE--CCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCCCCcCCcEEEE
Confidence            45555  2335556 56899999999997687 589999999999999998

>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*

Probab=97.43  E-value=0.00023  Score=65.03  Aligned_cols=48  Identities=17%  Similarity=0.403  Sum_probs=39.6

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHH-cCC-CCCCCCCCccccCCeEEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAED-AGI-DLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~-~Gi-~i~~~C~~G~CgtC~v~v  100 (145)
                      ++++++  ++..++++++++++||++|++ .|+ ...++|+.|.||.|.|.|
T Consensus         3 ~~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~v   52 (907)
T 1vlb_A            3 QKVITV--NGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL   52 (907)
T ss_dssp             EEEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred             eEEEEE--CCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEE
Confidence            345555  344677888999999999998 477 789999999999999998

>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1

Probab=97.30  E-value=0.00028  Score=64.48  Aligned_cols=48  Identities=13%  Similarity=0.343  Sum_probs=39.8

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHH-cCC-CCCCCCCCccccCCeEEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAED-AGI-DLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~-~Gi-~i~~~C~~G~CgtC~v~v  100 (145)
                      ++++++  ++..++++++++++||++|++ .|+ ...++|+.|.||.|.|.|
T Consensus         3 ~~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~v   52 (907)
T 1dgj_A            3 TKTLIV--NGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL   52 (907)
T ss_dssp             EEECEE--TTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred             eEEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEE
Confidence            345555  344667899999999999998 477 689999999999999998

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.59  E-value=0.0029  Score=53.37  Aligned_cols=46  Identities=20%  Similarity=0.191  Sum_probs=34.3

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCC---C-Ccc--ccCCeEEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSC---R-AGS--CSTCAGKV  100 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C---~-~G~--CgtC~v~v  100 (145)
                      +++++|   +| +++++.+|+||+++++++|+++...|   + .|.  |+.|.|+|
T Consensus        15 ~v~~~~---dg-~~~~~~~g~ti~~a~~~~g~~~~~~~~~~~p~g~~~~~~c~v~v   66 (493)
T 1y56_A           15 KVTIYF---EG-KELEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGPVPMTV   66 (493)
T ss_dssp             EEEEEE---TT-EEEEEETTCBHHHHHHHTTCCCCEECTTSCEECSSSSSCCEEBS
T ss_pred             eEEEEE---CC-EEEEecCCCHHHHHHHHCCCceecCCCCCCCCccccceEEEEEE
Confidence            466666   34 67999999999999999999652111   3 455  88899976

>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*

Probab=95.86  E-value=0.0078  Score=57.13  Aligned_cols=36  Identities=19%  Similarity=0.485  Sum_probs=32.3

Q ss_pred             EecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEE
Q 032230           66 ECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVV  101 (145)
Q Consensus        66 ~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~  101 (145)
                      +++++++||+.|++. |+ ....+|+.|.||.|.|.|-
T Consensus        19 ~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~   56 (1332)
T 3unc_A           19 NADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS   56 (1332)
T ss_dssp             TCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred             cCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEe
Confidence            478999999999984 87 5899999999999999984

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.17  E-value=0.042  Score=50.23  Aligned_cols=53  Identities=9%  Similarity=0.084  Sum_probs=41.0

Q ss_pred             cccceeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCC-----------CCCccccCCeEEEE
Q 032230           45 RVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYS-----------CRAGSCSTCAGKVV  101 (145)
Q Consensus        45 ~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~-----------C~~G~CgtC~v~v~  101 (145)
                      ++..+.+++++|   +| +++++.+|+||+++|+.+|+.+...           |..|.|..|.+.+.
T Consensus        16 ~~~~~~~~~~~~---dG-~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~   79 (965)
T 2gag_A           16 RINREEALSLTV---DG-AKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAGVEEPNALVTVS   79 (965)
T ss_dssp             SSEEEEEEEEEE---TT-EEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSSTTCCSCEEEEC
T ss_pred             ccCCCCeEEEEE---CC-EEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCCccCCceEEEEc
Confidence            333355666666   34 6899999999999999999975443           45688999999996

>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}

Probab=93.38  E-value=0.085  Score=50.11  Aligned_cols=35  Identities=17%  Similarity=0.464  Sum_probs=31.0

Q ss_pred             ecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEE
Q 032230           67 CPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVV  101 (145)
Q Consensus        67 v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~  101 (145)
                      +++..|||+.|+.+ |+ .-...|+.|-||.|.|-|-
T Consensus        24 ~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~   60 (1335)
T 3zyv_A           24 ADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMIS   60 (1335)
T ss_dssp             CCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEE
T ss_pred             CCcCccHHHHHhccCCCcccccccCCCCCcceEEEEe
Confidence            56899999999974 77 5889999999999999984

>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}

Probab=86.15  E-value=1.4  Score=29.79  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=24.9

Q ss_pred             eeeeEEEEECCCC---eEEEEecCCCcHHHHHHHcC
Q 032230           49 MATYKVKLITPEG---EQEIECPDDTYILDAAEDAG   81 (145)
Q Consensus        49 m~~~~Vti~~~~~---~~~~~v~~g~tLLeal~~~G   81 (145)
                      ++.++|+|...++   ...|. +++++|+++|..+.
T Consensus         6 ~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~   40 (101)
T 3u7z_A            6 EKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESEN   40 (101)
T ss_dssp             CEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred             eeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcC
Confidence            5678899887655   23455 78999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1a70a_	97	d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia	3e-37
d1iuea_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite	2e-36
d1awda_	94	d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [	2e-36
d1czpa_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (A	3e-36
d1frra_	95	d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense	7e-36
d1wria_	93	d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense	9e-35
d1krha3	104	d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,	5e-34
d1frda_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (A	9e-33
d1doia_	128	d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcu	4e-32
d1jq4a_	98	d.15.4.2 (A:) Methane monooxygenase reductase N-te	4e-29
d2piaa3	98	d.15.4.2 (A:224-321) Phthalate dioxygenase reducta	1e-23
d2fug33	95	d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chai	1e-14
d1i7ha_	109	d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escheri	1e-13
d1b9ra_	105	d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp.,	1e-07
d1e9ma_	106	d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsu	1e-06
d1xlqa1	106	d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas	2e-05
d3c8ya2	126	d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal	4e-05
d1l5pa_	93	d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vagin	9e-05
d2bt6a1	104	d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [	2e-04

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  120 bits (302), Expect = 3e-37
 Identities = 68/96 (70%), Positives = 81/96 (84%)

Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSD 109
           A YKV L+TP G  E +CPDD YILDAAE+ GIDLPYSCRAGSCS+CAGK+ +GS++Q D
Sbjct: 1   AAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDD 60

Query: 110 GSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
            SFL+DDQID G+VLTC AYP SDVT+ETHK EE++
Sbjct: 61  QSFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEELT 96

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  118 bits (298), Expect = 2e-36
 Identities = 51/95 (53%), Positives = 69/95 (72%)

Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSD 109
           A Y + L T +GE++IEC +D YILDA+E   ++LPYSCR GSCSTCA K+V G VD  D
Sbjct: 1   AFYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDD 60

Query: 110 GSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
            S+L+++QI   Y+L C  YP SD  +ETHK++E+
Sbjct: 61  QSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDEL 95

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Chlorella fusca [TaxId: 3073]

 Score =  118 bits (297), Expect = 2e-36
 Identities = 67/93 (72%), Positives = 80/93 (86%)

Query: 52  YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGS 111
           YKV L TP GE+ IECP+DTYILDAAE+AG+DLPYSCRAG+CS+CAGKV SG VDQSD S
Sbjct: 1   YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQS 60

Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           FL+D Q+  G+VLTCVAYPTSDVT+ TH++  +
Sbjct: 61  FLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

 Score =  118 bits (296), Expect = 3e-36
 Identities = 69/97 (71%), Positives = 83/97 (85%), Gaps = 2/97 (2%)

Query: 50  ATYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ 107
           AT+KV LI      + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK+VSG+VDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60

Query: 108 SDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           SD SFL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

 Score =  117 bits (294), Expect = 7e-36
 Identities = 59/93 (63%), Positives = 77/93 (82%)

Query: 52  YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGS 111
           YK  L TP GE  ++ P+ T ILDAAE+AG DLP+SCRAG+CS+C GKVVSGSVD+S+GS
Sbjct: 2   YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGS 61

Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           FL+D Q++ G+VLTC+A P SD+ +ETHK+EE+
Sbjct: 62  FLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

 Score =  114 bits (286), Expect = 9e-35
 Identities = 51/93 (54%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 52  YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGS 111
           YKV L TP+G+   +      ++D   +   DLP SC+AG+CSTC GK+VSG+VDQS+GS
Sbjct: 2   YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGS 60

Query: 112 FLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           FL+D+QI+ GYVLTC+A P SDV +ETHK++E+
Sbjct: 61  FLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]} Length = 104

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

 Score =  112 bits (282), Expect = 5e-34
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 50  ATYKVKLITPEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQS 108
           + ++V L   +G    I       + DAA    I++P  CR G C TC     SG+ D  
Sbjct: 1   SNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMP 60

Query: 109 DGSF----LEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
           + ++    L  ++   GYVL C   PTSD   +     E+
Sbjct: 61  EDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQASSEV 100

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

 Score =  109 bits (273), Expect = 9e-33
 Identities = 48/98 (48%), Positives = 71/98 (72%), Gaps = 2/98 (2%)

Query: 50  ATYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ 107
           A+Y+V+LI  +   +  IE  ++T ILD AE+ GI+LP+SC +GSCS+C GKVV G VDQ
Sbjct: 1   ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60

Query: 108 SDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 145
           SD  FL+D+Q+  G+ L CV YP S+ T++TH++  ++
Sbjct: 61  SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 98

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 128

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  108 bits (272), Expect = 4e-32
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 57  ITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDD 116
           +  E    +E  +  YIL+AAE  G D P+SCRAG+C+ CA  V+ G +D      L D+
Sbjct: 32  LDDEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDE 91

Query: 117 QI-DAGYVLTCVAYPTSDVTVETHKDEEMS 145
           ++ D    LTC+  P +D     +  + + 
Sbjct: 92  EVEDKNVRLTCIGSPDADEVKIVYNAKHLD 121

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

 Score =  100 bits (250), Expect = 4e-29
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 49  MATYKVKLITPEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQ 107
              + +  +T +GE    EC  D  ++ AA    I L  SCR G C+TC      G  D 
Sbjct: 2   QRVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDL 61

Query: 108 SDGSF--LEDDQIDAGYVLTCVAYPTSDVTVE 137
              S   L  ++ + G VL C  YP +D+ +E
Sbjct: 62  KGCSVQALPPEEEEEGLVLLCRTYPKTDLEIE 93

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Phthalate dioxygenase reductase, C-terminal domain
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 86.5 bits (214), Expect = 1e-23
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 50  ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSD 109
             + V+L +  G    E P +  IL+   DA + +P SC +G+C +C   + SG  D  D
Sbjct: 13  TPFTVRL-SRSG-TSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRD 70

Query: 110 GSFLEDDQIDAGYVLTCVAYPTSDVTV 136
               +D++     ++ CV+   S   V
Sbjct: 71  MVLRDDEK--GTQIMVCVSRAKSAELV 95

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 63.4 bits (153), Expect = 1e-14
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 57  ITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQSDG 110
           +     + +E P  T ++DA   AG D+P  C        G+C  C  ++          
Sbjct: 4   VKVND-RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGK 62

Query: 111 SFLEDDQIDA-----GYVLTCVAYPTSDVTVET 138
             L +              +CV      + V+T
Sbjct: 63  PLLNEKGEPEIQWQPKLAASCVTAVADGMVVDT 95

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]} Length = 109

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

 Score = 61.2 bits (148), Expect = 1e-13
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 57  ITPEGEQEIECPDDTYILDAAEDAGIDLPYSC-RAGSCSTCAGKVVSGSVDQSDGSFLED 115
           + P+G   +E      ILDAA   GI++ ++C ++ +C+TC   V  G     + S  ED
Sbjct: 11  LCPDG-AVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQED 69

Query: 116 DQID------AGYVLTCVAYPTS-DVTVE 137
           D +D          L+C A  T  D+ VE
Sbjct: 70  DMLDKAWGLEPESRLSCQARVTDEDLVVE 98

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas sp., terpredoxin [TaxId: 306]

 Score = 45.4 bits (107), Expect = 1e-07
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 53  KVKLITPEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRAGS--CSTCAGKVVSGSVDQ-S 108
           +V  I  +  +  ++  D   +++ A   G+    +   GS  C+TC  ++    V+   
Sbjct: 2   RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVG 61

Query: 109 DGSFLEDDQID-------AGYVLTCVAYPTSD 133
           + +  E+D +        AG  L+C  +    
Sbjct: 62  EANPDENDLLQSTGEPMTAGTRLSCQVFIDPS 93

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]} Length = 106

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]

 Score = 42.7 bits (100), Expect = 1e-06
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 14/99 (14%)

Query: 53  KVKLITPEGEQ-EIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVDQ-S 108
           K+  I   G + E+E      +++AA D G+  +   C  A +CSTC   V    VD+  
Sbjct: 2   KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLP 61

Query: 109 DGSFLEDDQID-------AGYVLTCVAYPTSD---VTVE 137
                E D ID       A   LTC    TS    + V 
Sbjct: 62  KALPTETDMIDFAYEPNPATSRLTCQIKVTSLLDGLVVH 100

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]} Length = 106

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

 Score = 38.9 bits (90), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 53  KVKLITPEGEQ-EIECPDDTYILDAAEDAGIDLPYSCR--AGSCSTCAGKVVSGSVDQ 107
           KV  ++ +G + E++  D   ++ AA   GI         + SC+TC   V     D+
Sbjct: 2   KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDK 59

>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]} Length = 126

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, N-terminal domain
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 38.8 bits (90), Expect = 4e-05
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 63  QEIECPDDTYILDAAEDAGIDLPYSCR-------AGSCSTCAGKVVSGSVDQS 108
            +    +DT IL  A D  ID+   C           C  C  +V    +  +
Sbjct: 9   VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVTA 61

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Trichomonas vaginalis [TaxId: 5722]

 Score = 36.9 bits (85), Expect = 9e-05
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 57  ITPEGEQ-EIECPDDTYILDAAEDAGI-DLPYSC-RAGSCSTCAGKVVSGSVDQSDGSFL 113
               G + +++  DD  +     +AG+     +C    +C  C  K VSG    +     
Sbjct: 5   AVKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSG--KVAAAEDD 62

Query: 114 EDD---QIDAGYVLTCVAYPTSDV 134
           E +      A   L C    + + 
Sbjct: 63  EKEFLEDQPANARLACAITLSGEN 86

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} Length = 104

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 14/99 (14%)

Query: 53  KVKLITPEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRA-GSCSTCAGKVVSGSV----- 105
            V  I  +GE    +      +LD      +D+       G+ +     ++         
Sbjct: 4   TVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKL 63

Query: 106 ----DQSDGSFLEDDQIDAGYVLTCVAYPTSD---VTVE 137
               D+ +        +     L C    T     +TV 
Sbjct: 64  EAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVR 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1frra_	95	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	99.97
d1awda_	94	2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}	99.96
d1a70a_	97	2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta	99.96
d1iuea_	98	2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa	99.96
d1czpa_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	99.96
d1wria_	93	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	99.95
d1frda_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	99.94
d1krha3	104	Benzoate dioxygenase reductase, N-terminal domain	99.94
d1jq4a_	98	Methane monooxygenase reductase N-terminal domain	99.94
d2piaa3	98	Phthalate dioxygenase reductase, C-terminal domain	99.91
d1doia_	128	2Fe-2S ferredoxin {Archaeon Haloarcula marismortui	99.84
d1e9ma_	106	2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo	99.84
d1i7ha_	109	Adrenodoxin-like ferredoxin {Escherichia coli [Tax	99.83
d1b9ra_	105	2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T	99.82
d2fug33	95	Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi	99.82
d1xlqa1	106	2Fe-2S ferredoxin {Pseudomonas putida, putidaredox	99.82
d1l5pa_	93	2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5	99.77
d2bt6a1	104	Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d3c8ya2	126	Fe-only hydrogenase, N-terminal domain {Clostridiu	99.11
d1kf6b2	105	Fumarate reductase iron-sulfur protein, N-terminal	98.58
d1t3qa2	81	Quinoline 2-oxidoreductase small subunit QorS, N-d	98.53
d1vlba2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	98.5
d1dgja2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	98.44
d1rm6c2	81	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC,	98.38
d1ffva2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	98.23
d1n62a2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	98.23
d2bs2b2	106	Fumarate reductase iron-sulfur protein, N-terminal	98.22
d1jroa2	84	Xanthine dehydrogenase chain A, N-terminal domain	98.11
d1v97a2	90	Xanthine oxidase, N-terminal domain {Cow (Bos taur	97.82
d1nekb2	106	Succinate dehydogenase iron-sulfur protein, N-term	97.71
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	95.11

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=99.97  E-value=7.6e-31  Score=179.65  Aligned_cols=95  Identities=62%  Similarity=1.099  Sum_probs=90.3

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP  130 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  130 (145)
                      .|+|+|..+++.++|++++|+|||++++++||++||+|+.|.||+|+++|++|++++.+...|+++++++||||+||++|
T Consensus         1 ~~kVt~~~~~~~~~~~~~~g~slLda~~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~   80 (95)
T d1frra_           1 AYKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIP   80 (95)
T ss_dssp             CEEEEEEETTEEEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEE
T ss_pred             CeEEEEECCCCcEEEEECCCCcHHHHHHHcCCCEEeccCCcEeCCCEEEEecceEcccccccCCHHHHhcCcEEeeeCEE
Confidence            38899987777778999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             CCCeEEEeCCCCCCC
Q 032230          131 TSDVTVETHKDEEMS  145 (145)
Q Consensus       131 ~~dl~I~~~~e~~l~  145 (145)
                      .+|++|+++.+++||
T Consensus        81 ~~d~~ie~~~e~~~~   95 (95)
T d1frra_          81 ESDLVIETHKEEELF   95 (95)
T ss_dssp             SSCEEEECCCTTTTC
T ss_pred             CCCEEEEecCccccC
Confidence            999999999999998

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Chlorella fusca [TaxId: 3073]

Probab=99.96  E-value=2.4e-30  Score=176.72  Aligned_cols=94  Identities=71%  Similarity=1.225  Sum_probs=89.4

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT  131 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  131 (145)
                      |+|||..+++.++|++++|+|||++++++||++||+|+.|.||+|++++++|++++.+...|+++++++||+|+||++|.
T Consensus         1 fkVTl~~~~~~~~~~~~~~~slL~aa~~~Gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~   80 (94)
T d1awda_           1 YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPT   80 (94)
T ss_dssp             CEEEEEETTEEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES
T ss_pred             CEEEEEeCCCcEEEEeCCCCcHHHHHHHcCCcEEEecCCCccCCceEEEeeceEcccccccCCHHHHhCCcEEEeeCEEC
Confidence            68888877777889999999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             CCeEEEeCCCCCCC
Q 032230          132 SDVTVETHKDEEMS  145 (145)
Q Consensus       132 ~dl~I~~~~e~~l~  145 (145)
                      +|++|+++++++||
T Consensus        81 ~D~~i~~~~~~~~~   94 (94)
T d1awda_          81 SDVTILTHQEAALY   94 (94)
T ss_dssp             SCEEEECCCGGGGC
T ss_pred             CCEEEecCChhhcC
Confidence            99999999999998

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.96  E-value=5e-30  Score=176.03  Aligned_cols=94  Identities=71%  Similarity=1.266  Sum_probs=89.2

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP  130 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  130 (145)
                      .|+|+|..+++.++|++++|+|||++++++|++++|+|+.|.||+|+++|++|++++.+...|+++++++||||+||++|
T Consensus         2 ~fkVtv~~~~g~~~~~~~~g~tlL~a~~~~Gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~~~~~g~~L~C~~~~   81 (97)
T d1a70a_           2 AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYP   81 (97)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEE
T ss_pred             cEEEEEEeCCCCEEEEeCCCchHHHHHHHcCCCeeeCCCcEEcCCCEeEeecCccccccccccChhHhcCCeEEeeeCEE
Confidence            58999987777788999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             CCCeEEEeCCCCCC
Q 032230          131 TSDVTVETHKDEEM  144 (145)
Q Consensus       131 ~~dl~I~~~~e~~l  144 (145)
                      .+|++|+++++++|
T Consensus        82 ~~D~~Ie~~~e~el   95 (97)
T d1a70a_          82 VSDVTIETHKKEEL   95 (97)
T ss_dssp             SSCEEEECCCGGGC
T ss_pred             CCCEEEEcCChhhc
Confidence            99999999998886

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=4.6e-30  Score=176.54  Aligned_cols=95  Identities=53%  Similarity=1.039  Sum_probs=89.2

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP  130 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  130 (145)
                      .|+|||..+++.++|++++|+|||++++++|+.+||+|+.|.||+|+++|++|.+++.+...|+++++++||+|+||++|
T Consensus         2 ~~~VT~~~~~~~~~~~~~~getlLda~~~~gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~   81 (98)
T d1iuea_           2 FYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYP   81 (98)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEE
T ss_pred             EEEEEEEeCCCeEEEEECCCCcHHHHHHHcCCCeEEcCCceEcCCCEEEEecCcCccCccccCChhHHhcCeEEecCCEE
Confidence            48999987776789999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             CCCeEEEeCCCCCCC
Q 032230          131 TSDVTVETHKDEEMS  145 (145)
Q Consensus       131 ~~dl~I~~~~e~~l~  145 (145)
                      .+|++|+++.+++||
T Consensus        82 ~~d~~ie~~~~~~l~   96 (98)
T d1iuea_          82 KSDCVIETHKEDELH   96 (98)
T ss_dssp             SSCEEEECCCHHHHH
T ss_pred             CCCEEEEcCCccccc
Confidence            999999999888764

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=99.96  E-value=3.6e-29  Score=172.08  Aligned_cols=95  Identities=74%  Similarity=1.249  Sum_probs=88.7

Q ss_pred             eeEEEEEC-CCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEe
Q 032230           51 TYKVKLIT-PEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVA  128 (145)
Q Consensus        51 ~~~Vti~~-~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~  128 (145)
                      +|+|+|.. .+| .++|.+++|+|||++++++||++||+|+.|.||+|+++|++|.+++.+...|+++++++||||+||+
T Consensus         2 t~~Vtl~~~~~g~~~~~~v~~~~slL~a~~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~   81 (98)
T d1czpa_           2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVA   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred             eEEEEEEEcCCCCEEEEEeCcCChHHHHHHHcCCCeEEecCCcccCCCeeEEecccccccccccCChhHhcCCeEEeccC
Confidence            58898864 344 5789999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             EECCCeEEEeCCCCCCC
Q 032230          129 YPTSDVTVETHKDEEMS  145 (145)
Q Consensus       129 ~~~~dl~I~~~~e~~l~  145 (145)
                      +|.+|++|+++.+++||
T Consensus        82 ~~~~d~~ie~~~e~~~~   98 (98)
T d1czpa_          82 YPTSDVVIQTHKEEDLY   98 (98)
T ss_dssp             EESSCEEEECCCTTTTC
T ss_pred             EECCCEEEEcCCccccC
Confidence            99999999999999998

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=99.95  E-value=4.2e-28  Score=165.26  Aligned_cols=93  Identities=55%  Similarity=1.035  Sum_probs=86.3

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYP  130 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  130 (145)
                      .|+|||..+++.++|.+++|+|||++++++| .+||+|+.|.||+|+++|++|.+++.+...|++++.++||+|+||++|
T Consensus         1 s~~Vt~~~~~~~~~~~~~~~~~lLdaa~~~~-~lp~~Cr~G~CgtC~~~v~~G~v~~~~~~~L~~~e~~~g~~L~C~~~~   79 (93)
T d1wria_           1 AYKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIP   79 (93)
T ss_dssp             CEEEEEEETTEEEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEE
T ss_pred             CEEEEEEcCCCcEEEEeCCCCcHHHHHHhCC-CEEEEeCCcccCcCEeEeecceEeccccccCCHhHHhcCeEEeeeCEE
Confidence            3889998777778899999999999998864 999999999999999999999999988889999999999999999999


Q ss_pred             CCCeEEEeCCCCCC
Q 032230          131 TSDVTVETHKDEEM  144 (145)
Q Consensus       131 ~~dl~I~~~~e~~l  144 (145)
                      .+|++|+++.+++|
T Consensus        80 ~sD~~ie~~~ed~v   93 (93)
T d1wria_          80 ESDVVIETHKEDEL   93 (93)
T ss_dssp             SSCEEEECCCGGGC
T ss_pred             CCCEEEEccCcCCC
Confidence            99999999999876

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=99.94  E-value=1.2e-27  Score=164.17  Aligned_cols=94  Identities=50%  Similarity=0.975  Sum_probs=86.7

Q ss_pred             eeEEEEECCCC--eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEe
Q 032230           51 TYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVA  128 (145)
Q Consensus        51 ~~~Vti~~~~~--~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~  128 (145)
                      .|+|+|..++.  .++|++++|+||||+++++||+|||.|+.|.||+|++++++|.+.+.+...|++++.++||||+||+
T Consensus         2 s~~Vt~~~~~~~~~~ti~v~~g~siLdaa~~~Gi~i~~~C~~G~CgtC~~~v~~G~~~~~~~~~l~~~~~~~g~~L~C~~   81 (98)
T d1frda_           2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred             eEEEEEEeCCCCceEEEEeCCCChHHHHHHHcCCCEEEecCCCeeCCCEEEeccCCcccccccccChhhhcCCeEEeeeC
Confidence            58999975443  5679999999999999999999999999999999999999999999888899999999999999999


Q ss_pred             EECCCeEEEeCCCCCC
Q 032230          129 YPTSDVTVETHKDEEM  144 (145)
Q Consensus       129 ~~~~dl~I~~~~e~~l  144 (145)
                      +|.+|++|+++++..|
T Consensus        82 ~~~~D~~Ie~~~e~~l   97 (98)
T d1frda_          82 YPRSNCTIKTHQEPYL   97 (98)
T ss_dssp             EESSSEEEECCCGGGC
T ss_pred             EECCCEEEEeCCcccc
Confidence            9999999999988765

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

Probab=99.94  E-value=3e-27  Score=163.95  Aligned_cols=95  Identities=31%  Similarity=0.509  Sum_probs=84.8

Q ss_pred             eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCC----CCCCCChhcccCCeEEe
Q 032230           51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQS----DGSFLEDDQIDAGYVLT  125 (145)
Q Consensus        51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~----e~~~L~~~~~~~g~rLa  125 (145)
                      +|+|+|...+| .++|++++|+|||++++++||+|||.|+.|.||+|+++|++|.+++.    ....|+++++++||||+
T Consensus         2 ~~kVt~~f~dg~~~~~~~~~getlL~aa~~~gi~i~~~C~~G~CgtC~v~v~~G~~~~~~~~~~~~~l~~~e~~~g~~La   81 (104)
T d1krha3           2 NHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLA   81 (104)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEEET
T ss_pred             ceEEEEEeCCCCEEEEEeCCCCcHHHHHHHcCCCCccccCCcccCCCEEEeeeCcccccccccccccCCHHHHhcCcEEe
Confidence            47888876665 46799999999999999999999999999999999999999998764    24578888899999999


Q ss_pred             EEeEECCCeEEEeCCCCCCC
Q 032230          126 CVAYPTSDVTVETHKDEEMS  145 (145)
Q Consensus       126 Cq~~~~~dl~I~~~~e~~l~  145 (145)
                      ||+++.+|++|+++.+.+++
T Consensus        82 Cq~~~~~d~~i~i~~~~e~~  101 (104)
T d1krha3          82 CQCRPTSDAVFQIQASSEVC  101 (104)
T ss_dssp             TTCEESSSEEEEESSCTTGG
T ss_pred             eeCEECCCEEEEecCcchhh
Confidence            99999999999999998863

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.94  E-value=1.2e-27  Score=164.08  Aligned_cols=94  Identities=29%  Similarity=0.514  Sum_probs=84.1

Q ss_pred             ceeeeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCC--CCCCCChhcccCCeEE
Q 032230           48 AMATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQS--DGSFLEDDQIDAGYVL  124 (145)
Q Consensus        48 ~m~~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rL  124 (145)
                      |+.+++|+|..++| .++|++++|+|||++|+++||++|++|+.|.||+|++++++|++++.  +...|+++++++||||
T Consensus         1 m~~~~tvt~i~~dG~~~~~~~~~g~slLdaa~~~Gi~i~~~C~~G~Cg~C~~~v~~G~~~~~~~~~~~L~~~e~~~g~~L   80 (98)
T d1jq4a_           1 MQRVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVL   80 (98)
T ss_dssp             CCCEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBC
T ss_pred             CCceEEEEEEEcCCCEEEEEeCCCchHHHHHHHcCCCeEEcCCCceeCCceEEEEECeEecCccccccCCHhHHhcCeEE
Confidence            34579999887777 46799999999999999999999999999999999999999998875  3467899999999999


Q ss_pred             eEEeEECCCeEEEeCCC
Q 032230          125 TCVAYPTSDVTVETHKD  141 (145)
Q Consensus       125 aCq~~~~~dl~I~~~~e  141 (145)
                      +||++|.+|++|++|..
T Consensus        81 ~Cq~~~~sD~~i~lp~~   97 (98)
T d1jq4a_          81 LCRTYPKTDLEIELPYT   97 (98)
T ss_dssp             TTTCCSSCCSEEECSCC
T ss_pred             eccCEECCCEEEEeCCC
Confidence            99999999999999853

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Phthalate dioxygenase reductase, C-terminal domain
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.91  E-value=9e-25  Score=149.87  Aligned_cols=97  Identities=29%  Similarity=0.603  Sum_probs=78.3

Q ss_pred             eeccccCCCCCCcccceeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCccCCCCCC
Q 032230           33 LFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSF  112 (145)
Q Consensus        33 ~F~~~~~~~~~~~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~  112 (145)
                      .||+.....  .   ....|+|+|. +++ ++|++++|+|||++++++|++|||+|+.|.||+|+++|++|++++.+. .
T Consensus         1 ~F~~~~~~~--~---~~~~~~V~l~-~~g-~~~~v~~~~slL~aa~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~~-~   72 (98)
T d2piaa3           1 SFGATNTNA--R---ENTPFTVRLS-RSG-TSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDM-V   72 (98)
T ss_dssp             CCCCCCCCC--S---CCCCEEEEET-TTC-CEEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEESCEECCCS-S
T ss_pred             CcCCCCCCC--C---CCCCEEEEEe-CCC-EEEEECcCCcHHHHHHhcCCcccccCCccEeCCCEEEEEeeceecCCC-C
Confidence            377766321  1   1346899995 455 589999999999999999999999999999999999999999987653 4


Q ss_pred             CChhcccCCeEEeEEeEECCC-eEEEe
Q 032230          113 LEDDQIDAGYVLTCVAYPTSD-VTVET  138 (145)
Q Consensus       113 L~~~~~~~g~rLaCq~~~~~d-l~I~~  138 (145)
                      +.+++ +++|+|+||+++.+| ++|++
T Consensus        73 ~~~~~-~~~~~L~C~s~~~s~~lvidl   98 (98)
T d2piaa3          73 LRDDE-KGTQIMVCVSRAKSAELVLDL   98 (98)
T ss_dssp             CCTTT-TTTEEETTTCEESSSEEEECC
T ss_pred             CChHH-hCCcEEEeeCEECCCCEEEeC
Confidence            55444 579999999999985 88864

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.84  E-value=1.9e-21  Score=139.03  Aligned_cols=112  Identities=29%  Similarity=0.534  Sum_probs=81.3

Q ss_pred             CCCceeeeeccccCCCCCCcccceeeeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCCCccccCCeEEEEeCCc
Q 032230           26 MPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSV  105 (145)
Q Consensus        26 ~~~~~~e~F~~~~~~~~~~~~~~m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~~G~CgtC~v~v~~G~~  105 (145)
                      ..++|+|.|-....+..-+..+. ....+.+.. ....+|++++|+|||++|+++||.|||+|+.|.||+|+++|++|.+
T Consensus         3 ~~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~t~~v~~g~tlLdaa~~aGi~ip~~Cr~G~CgsC~~~v~~G~~   80 (128)
T d1doia_           3 VEYLNYEVVDDNGWDMYDDDVFG-EASDMDLDD-EDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDI   80 (128)
T ss_dssp             EEEEEHHHHHHHTCCTTTSCHHH-HHHHSCCCT-TTEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCE
T ss_pred             eeeeeeEeeecCCCCCCccchhh-hceeEEecC-CCceEEEECcCChHHHHHHHcCCCCccCCCCCcCCCCceEeeeCCc
Confidence            45678887755542111112111 112233322 2345799999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCChhc-ccCCeEEeEEeEECCC-eEEEeC
Q 032230          106 DQSDGSFLEDDQ-IDAGYVLTCVAYPTSD-VTVETH  139 (145)
Q Consensus       106 ~~~e~~~L~~~~-~~~g~rLaCq~~~~~d-l~I~~~  139 (145)
                      ++.+...|+..+ .+.|++|+||++|.+| ++|...
T Consensus        81 ~~~~~~~l~~~e~~~~g~~L~Cqa~p~sD~v~v~~d  116 (128)
T d1doia_          81 DMDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYN  116 (128)
T ss_dssp             EECCCSSSCHHHHHTSCEEEGGGEEECSSEEEEEEC
T ss_pred             ccCcccCCCHHHHHhCCEEEeeeCEECCCeEEEECC
Confidence            988777777655 4568999999999999 444443

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]

Probab=99.84  E-value=1.8e-21  Score=134.68  Aligned_cols=90  Identities=28%  Similarity=0.421  Sum_probs=71.8

Q ss_pred             EEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCccCC------CCCC--CChhcccCC
Q 032230           53 KVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVDQS------DGSF--LEDDQIDAG  121 (145)
Q Consensus        53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~--L~~~~~~~g  121 (145)
                      ||+|..++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|..+..      |...  +..+...++
T Consensus         2 KIt~i~~dG~~~~i~~~~G~tLl~a~~~~gi~~i~~~CgG~g~C~tC~V~i~~g~~~~l~~~~~~E~~~L~~~~~~~~~~   81 (106)
T d1e9ma_           2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPAT   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTT
T ss_pred             EEEEECCCCCEEEEEECCCChHHHHHHHcCCCCcCcccccCceecceEEEeccCccccCCCCCHHHHHHHhhccccCCCc
Confidence            688876676 5689999999999999999995 999998 8999999999999964421      1222  233445679


Q ss_pred             eEEeEEeEECCC---eEEEeCCCC
Q 032230          122 YVLTCVAYPTSD---VTVETHKDE  142 (145)
Q Consensus       122 ~rLaCq~~~~~d---l~I~~~~e~  142 (145)
                      +||+||+++.+|   ++|++|+++
T Consensus        82 sRLaCQ~~v~~d~~gl~V~iPe~q  105 (106)
T d1e9ma_          82 SRLTCQIKVTSLLDGLVVHLPEKQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             eEeeEeCEeccccCCEEEECCccc
Confidence            999999999754   899998654

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.7e-21  Score=135.46  Aligned_cols=83  Identities=29%  Similarity=0.473  Sum_probs=68.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-CccccCCeEEEEeCCccCCC-----CCCC-ChhcccCCeEEeEEeEEC
Q 032230           59 PEGEQEIECPDDTYILDAAEDAGIDLPYSCR-AGSCSTCAGKVVSGSVDQSD-----GSFL-EDDQIDAGYVLTCVAYPT  131 (145)
Q Consensus        59 ~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e-----~~~L-~~~~~~~g~rLaCq~~~~  131 (145)
                      |+| ++|++++|+|||++++++||++++.|+ .|.||+|+++|.+|......     ...| ...+.+++|||+||+++.
T Consensus        13 p~g-~~v~~~~G~tLl~aa~~~gi~i~~~CgG~g~CgtC~v~v~~G~~~l~~~~~~E~~~l~~~~~~~~~~RLaCQ~~v~   91 (109)
T d1i7ha_          13 PDG-AVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVT   91 (109)
T ss_dssp             TTC-EEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCTTEEETTTCBCC
T ss_pred             CCC-cEEEeCCCCcHHHHHHHcCCCCCcCCCCcceeCCeEEEeecCccccCCCChHHhhhhhccccCCCCeEEEEeeEEC
Confidence            555 689999999999999999999999996 89999999999999765432     1222 234567899999999997


Q ss_pred             C-CeEEEeCCCC
Q 032230          132 S-DVTVETHKDE  142 (145)
Q Consensus       132 ~-dl~I~~~~e~  142 (145)
                      + |++|++|...
T Consensus        92 ~~dl~V~lP~~t  103 (109)
T d1i7ha_          92 DEDLVVEIPRYT  103 (109)
T ss_dssp             SSCEEEECCSCC
T ss_pred             CCCEEEEeCccc
Confidence            5 8999998753

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas sp., terpredoxin [TaxId: 306]

Probab=99.82  E-value=1e-21  Score=135.91  Aligned_cols=90  Identities=19%  Similarity=0.423  Sum_probs=72.8

Q ss_pred             eEEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCccC------CCCCCC--ChhcccC
Q 032230           52 YKVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVDQ------SDGSFL--EDDQIDA  120 (145)
Q Consensus        52 ~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L--~~~~~~~  120 (145)
                      +||+|..++| .++|+++.|+|||++++++||+ +++.|+ .|.||+|+|+|.+|..+.      .|..+|  ..+++++
T Consensus         1 Pkvt~i~~dG~~~~v~~~~G~tLl~aa~~~gi~~i~~~CgG~g~C~tC~V~v~~g~~~~l~~~~~~E~~~l~~~~~~~~~   80 (105)
T d1b9ra_           1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTA   80 (105)
T ss_dssp             CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCT
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCcccccCCCccccceEEEecccccccCCCCCHHHHHHHHhccccCCC
Confidence            3788876665 6789999999999999999996 999997 999999999999996431      122233  2345778


Q ss_pred             CeEEeEEeEECCC---eEEEeCCC
Q 032230          121 GYVLTCVAYPTSD---VTVETHKD  141 (145)
Q Consensus       121 g~rLaCq~~~~~d---l~I~~~~e  141 (145)
                      +|||+||+++.+|   ++|++|.+
T Consensus        81 ~sRLaCQ~~v~~dldgl~V~vP~~  104 (105)
T d1b9ra_          81 GTRLSCQVFIDPSMDGLIVRVPLP  104 (105)
T ss_dssp             TBSCGGGCCCCTTSTTEEEECCSC
T ss_pred             CcEeEeeeEecccCCCeEEEecCC
Confidence            9999999999875   79999865

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=6.1e-21  Score=129.08  Aligned_cols=84  Identities=24%  Similarity=0.408  Sum_probs=62.6

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC------CccccCCeEEEEeCCccCC-----CCCCCChhccc
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR------AGSCSTCAGKVVSGSVDQS-----DGSFLEDDQID  119 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~-----e~~~L~~~~~~  119 (145)
                      |++|+|   ++ ++|++++|+|||++++++||+||+.|+      .|.||+|+|+|.+|..++.     +...+...+..
T Consensus         1 Mv~i~i---~g-~~~~v~~g~tll~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~g~~~~~~~~~~~~~~~~~~~~~   76 (95)
T d2fug33           1 MVRVKV---ND-RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQ   76 (95)
T ss_dssp             CEEEEC---SS-CEEEECTTCBHHHHHHHHTCCCCCCSCCTTSCCCSCSTTSEEEEEC------------------CCBC
T ss_pred             CcEEEE---CC-EEEEECCCCcHHHHHHhcCCCCCccccCCCcCcccccCCCEEEEccCccccCcccchhhhhhhHhhcC
Confidence            356776   34 579999999999999999999999996      4999999999999987654     23344555566


Q ss_pred             CCeEEeEEeEECCCeEEEe
Q 032230          120 AGYVLTCVAYPTSDVTVET  138 (145)
Q Consensus       120 ~g~rLaCq~~~~~dl~I~~  138 (145)
                      .++||+||+.+.+|++|++
T Consensus        77 ~~~rlaCqt~v~~gm~V~T   95 (95)
T d2fug33          77 PKLAASCVTAVADGMVVDT   95 (95)
T ss_dssp             SSCEETTTCBCCTTCEEES
T ss_pred             CCccCcCcCCCCCCCEEeC
Confidence            7899999999999999974

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

Probab=99.82  E-value=2.5e-20  Score=128.91  Aligned_cols=90  Identities=24%  Similarity=0.447  Sum_probs=72.8

Q ss_pred             EEEEECCCC-eEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCccCC------CCCCCC--hhcccCC
Q 032230           53 KVKLITPEG-EQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVDQS------DGSFLE--DDQIDAG  121 (145)
Q Consensus        53 ~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~--~~~~~~g  121 (145)
                      ||+|..++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|..+..      |...|.  ..+.+++
T Consensus         2 KIt~i~~dG~~~~i~~~~G~tLl~aa~~~gi~~i~~~CgG~~~C~tC~V~v~~g~~~~l~~~~~~E~~~L~~~~~~~~~~   81 (106)
T d1xlqa1           2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred             EEEEECCCCCEEEEEeCCCChHHHHHHHhCcCCchhhhhhccccccceEEecccchhcCCCCCHHHHHHHHhhhccCCCC
Confidence            688877776 6789999999999999999995 999998 8999999999999965421      222332  2356789


Q ss_pred             eEEeEEeEECCC---eEEEeCCCC
Q 032230          122 YVLTCVAYPTSD---VTVETHKDE  142 (145)
Q Consensus       122 ~rLaCq~~~~~d---l~I~~~~e~  142 (145)
                      +||+||+++.+|   ++|++|+++
T Consensus        82 sRLaCQ~~v~~~~dgl~V~vPe~q  105 (106)
T d1xlqa1          82 SRLCCQIIMTPELDGIVVDVPDRQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             cEeeeeeEecccCCCEEEECCCcc
Confidence            999999999754   899998764

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Trichomonas vaginalis [TaxId: 5722]

Probab=99.77  E-value=8.1e-20  Score=123.83  Aligned_cols=84  Identities=21%  Similarity=0.418  Sum_probs=67.4

Q ss_pred             EEEEECCCCeEEEEecCCCcHHHHHHHcCCC-CCCCCC-CccccCCeEEEEeCCccCC---CCCCCChhcccCCeEEeEE
Q 032230           53 KVKLITPEGEQEIECPDDTYILDAAEDAGID-LPYSCR-AGSCSTCAGKVVSGSVDQS---DGSFLEDDQIDAGYVLTCV  127 (145)
Q Consensus        53 ~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~---e~~~L~~~~~~~g~rLaCq  127 (145)
                      +|++...+..++|++++|+|||++++++||+ +++.|+ .|.||+|+|+|.+|.+...   |..+|  ++..+++||+||
T Consensus         2 tvtv~~~G~~~~i~~~~G~tLl~al~~~gi~~i~~~CgG~~~C~tC~v~v~~g~~~~~~~~E~~~l--~~~~~~~RLaCQ   79 (93)
T d1l5pa_           2 TITAVKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFL--EDQPANARLACA   79 (93)
T ss_dssp             EEEEEETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHH--TTSCTTEEEGGG
T ss_pred             eEEEEECCeEEEEEeCCCchHHHHHHHhCCCCccccccCCCEeCccEEEEcCCccCCCChHHHHHh--hccCCCcEEEEE
Confidence            4566544446789999999999999999995 999997 8999999999999986653   22234  357789999999


Q ss_pred             eEECC---CeEEEe
Q 032230          128 AYPTS---DVTVET  138 (145)
Q Consensus       128 ~~~~~---dl~I~~  138 (145)
                      .++.+   +++|++
T Consensus        80 i~l~~eldg~~v~~   93 (93)
T d1l5pa_          80 ITLSGENDGAVFEL   93 (93)
T ss_dssp             CEECGGGTTCEEEC
T ss_pred             eEeccccCCeEEEC
Confidence            99986   477764

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=1e-18  Score=120.27  Aligned_cols=89  Identities=19%  Similarity=0.272  Sum_probs=70.1

Q ss_pred             eeEEEEECCCC-eEEEEecCCCcHHHHHHHcCCCCCCC--CC-CccccCCeEEEEeCCccCC------CCCCCCh-hccc
Q 032230           51 TYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYS--CR-AGSCSTCAGKVVSGSVDQS------DGSFLED-DQID  119 (145)
Q Consensus        51 ~~~Vti~~~~~-~~~~~v~~g~tLLeal~~~Gi~i~~~--C~-~G~CgtC~v~v~~G~~~~~------e~~~L~~-~~~~  119 (145)
                      .++|+|..++| .++++++.|+|||++++++|+++++.  |+ .|.|++|+|++.+|..+..      |..+|.. .+..
T Consensus         2 ~i~i~~i~~dG~~~~i~~~~G~tLl~~~~~~gi~i~~~~~CgG~~~C~tC~V~v~~~~~~~l~~~~~~E~~~L~~~~~~~   81 (104)
T d2bt6a1           2 KITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT   81 (104)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCC
T ss_pred             eEEEEEECCCCCEEEEEeCCCchHHHHHHHcCCCcccccccCCccccceEEEEecccchhhcCCCCHHHHHHhhccCCCC
Confidence            36788876666 57899999999999999999998865  77 9999999999998854421      2333432 3467


Q ss_pred             CCeEEeEEeEECC---CeEEEeC
Q 032230          120 AGYVLTCVAYPTS---DVTVETH  139 (145)
Q Consensus       120 ~g~rLaCq~~~~~---dl~I~~~  139 (145)
                      +++||+||.++..   +++|++|
T Consensus        82 ~~sRLaCQi~l~~~ldgl~V~vP  104 (104)
T d2bt6a1          82 DRSRLGCQICLTKAMDNMTVRVP  104 (104)
T ss_dssp             TTEEEGGGCBCCGGGTTEEEECC
T ss_pred             cCeEEeeeCEeeccCCCEEEecC
Confidence            8999999999974   5899886

>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, N-terminal domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=99.11  E-value=5.3e-11  Score=83.91  Aligned_cols=70  Identities=27%  Similarity=0.519  Sum_probs=58.1

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHcCCCCCCCCC-------CccccCCeEEEEeCCccCCCCCCCChhcccCCeE
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCR-------AGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYV  123 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~Gi~i~~~C~-------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~r  123 (145)
                      |.+|+|   || +++++++|+|||++++++||.||+.|.       .|.|..|.|++ +|                .+..
T Consensus         1 Mvti~I---dG-~~v~~~~G~til~aa~~~gi~IP~lC~~~~l~~~~G~Cr~C~Vev-~G----------------~~~v   59 (126)
T d3c8ya2           1 MKTIII---NG-VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EG----------------TGLV   59 (126)
T ss_dssp             CEEEEE---TT-EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TT----------------TEEE
T ss_pred             CcEEEE---CC-EEEEeCCCChHHHHHHHcCCccchhhhccCCCCCCccceeEEEEE-cc----------------Cccc
Confidence            467888   34 689999999999999999999999993       48999999998 22                1256


Q ss_pred             EeEEeEECCCeEEEeCCC
Q 032230          124 LTCVAYPTSDVTVETHKD  141 (145)
Q Consensus       124 LaCq~~~~~dl~I~~~~e  141 (145)
                      -||++.+..+++|++..+
T Consensus        60 ~AC~t~v~~GM~V~T~s~   77 (126)
T d3c8ya2          60 TACDTLIEDGMIINTNSD   77 (126)
T ss_dssp             EGGGCBCCTTCEEESSCH
T ss_pred             cccccCCCCCCEEEeCCH
Confidence            789999999999987654

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=5.5e-08  Score=66.09  Aligned_cols=57  Identities=26%  Similarity=0.469  Sum_probs=43.4

Q ss_pred             EEEEecCCCcHHHHHHH------cCCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC---CC
Q 032230           63 QEIECPDDTYILDAAED------AGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT---SD  133 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~------~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~---~d  133 (145)
                      ++++++++.|+||+|..      .-+.+.++|+.|.||+|.++| .|                 ..+|||++.+.   ..
T Consensus        26 y~v~~~~~~tvLd~L~~Ik~~~d~sLsfr~sCr~giCGsCam~I-NG-----------------~~~LAC~t~v~~~~~~   87 (105)
T d1kf6b2          26 YEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NN-----------------VPKLACKTFLRDYTDG   87 (105)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TT-----------------EEEEGGGCBGGGCTTC
T ss_pred             EEEecCCCCcHHHHHHHHHHhcCCcceEEeccCCCCCCCCeEEE-CC-----------------cccccceeEeeccCCC
Confidence            56777899999999942      235689999999999999998 33                 25888888765   34


Q ss_pred             eEEE
Q 032230          134 VTVE  137 (145)
Q Consensus       134 l~I~  137 (145)
                      ++|+
T Consensus        88 i~ie   91 (105)
T d1kf6b2          88 MKVE   91 (105)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6665

>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Quinoline 2-oxidoreductase small subunit QorS, N-domain
species: Pseudomonas putida [TaxId: 303]

Probab=98.53  E-value=1.3e-07  Score=61.36  Aligned_cols=52  Identities=15%  Similarity=0.379  Sum_probs=40.9

Q ss_pred             eeeeEEEEECCCCeEEEEecCCCcHHHHHHH-cCC-CCCCCCCCccccCCeEEEEeC
Q 032230           49 MATYKVKLITPEGEQEIECPDDTYILDAAED-AGI-DLPYSCRAGSCSTCAGKVVSG  103 (145)
Q Consensus        49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~-~Gi-~i~~~C~~G~CgtC~v~v~~G  103 (145)
                      |+.+++++  ++..++++++++++||++|++ .|+ .....|+.|.||.|.|.+ +|
T Consensus         3 ~~~i~~~v--NG~~~~~~~~~~~~Ll~~LR~~l~ltg~K~gC~~G~CGACtVlv-dG   56 (81)
T d1t3qa2           3 LMRISATI--NGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DG   56 (81)
T ss_dssp             CEEEEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TT
T ss_pred             eEEEEEEE--CCEEEEEecCCCCCHHHHHhhhhCCcccccCCCCcccCeeEEEE-CC
Confidence            33345555  344678899999999999986 487 589999999999999986 44

>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=98.50  E-value=1.7e-07  Score=60.64  Aligned_cols=51  Identities=18%  Similarity=0.432  Sum_probs=40.7

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCC
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      ..++++  ++..++++++++++||++|++. |+ ...+.|+.|.||.|.|.+ +|+
T Consensus         3 ~~~~~l--NG~~~~~~v~~~~~Lld~LR~~lgltg~K~gC~~G~CGACtVlv-dG~   55 (80)
T d1vlba2           3 QKVITV--NGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL-DGK   55 (80)
T ss_dssp             EEEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TTE
T ss_pred             eEEEEE--CCEEEEEecCCCCCHHHHHhHhhCCcccccCcCcCCCCeeEEEE-CCc
Confidence            345555  3446788899999999999975 87 689999999999999986 443

>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=98.44  E-value=2.2e-07  Score=60.11  Aligned_cols=52  Identities=15%  Similarity=0.384  Sum_probs=42.1

Q ss_pred             eeeeEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeC
Q 032230           49 MATYKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSG  103 (145)
Q Consensus        49 m~~~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G  103 (145)
                      |...+++++  +..++++++++++||+++++. |+ ...++|+.|.||.|.|.+ +|
T Consensus         1 M~~~~~~vN--G~~~~~~v~p~~~Ll~~LR~~~gltgtK~GC~~G~CGACtV~v-dG   54 (80)
T d1dgja2           1 METKTLIVN--GMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL-DG   54 (80)
T ss_dssp             CEEEECEET--TBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred             CceEEEEEC--CEEEEEEcCCCCCHHHHHhhhhCCceeccCCCCCCCCeeEEEE-CC
Confidence            445566663  345688999999999999975 88 689999999999999987 44

>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain
species: Thauera aromatica [TaxId: 59405]

Probab=98.38  E-value=5.1e-07  Score=58.49  Aligned_cols=51  Identities=24%  Similarity=0.506  Sum_probs=40.4

Q ss_pred             eeEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCC
Q 032230           51 TYKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        51 ~~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      ..++++  ++..+++.++++++||++|++. |+ ....+|+.|.||.|.|.| +|+
T Consensus         4 ~i~~~l--NG~~~~~~v~~~~~Ll~~LR~~lgltgtK~gC~~G~CGACTVlv-dG~   56 (81)
T d1rm6c2           4 ILRLTL--NGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR   56 (81)
T ss_dssp             EEEEEE--TTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE
T ss_pred             eEEEEE--CCEEEEEecCCCCCHHHHHHHhhCCcccccCCccccCCccEEeE-CCc
Confidence            345555  3445678899999999999865 87 489999999999999986 443

>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Hydrogenophaga pseudoflava [TaxId: 47421]

Probab=98.23  E-value=1.6e-06  Score=55.74  Aligned_cols=50  Identities=16%  Similarity=0.392  Sum_probs=40.5

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCC
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      +++++  ++..+++.++++++||+.|++. |+ ....+|+.|.||.|.|.+ +|.
T Consensus         4 i~~~v--NG~~~~~~v~~~~~Ll~~LR~~~gl~gtK~GC~~G~CGaCTVlv-dg~   55 (79)
T d1ffva2           4 ITVNV--NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI-DGR   55 (79)
T ss_dssp             EEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTE
T ss_pred             EEEEE--CCEEEEEeCCCCCCHHHHHhhhcCCcccccCCccccccccEEec-CCc
Confidence            45565  2446788999999999999875 77 589999999999999976 553

>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]

Probab=98.23  E-value=1.7e-06  Score=55.73  Aligned_cols=50  Identities=12%  Similarity=0.327  Sum_probs=40.1

Q ss_pred             eEEEEECCCCeEEEEecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEEEeCC
Q 032230           52 YKVKLITPEGEQEIECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKVVSGS  104 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  104 (145)
                      +++++  .+..++++++++++|+++|++. |+ ....+|+.|.||.|.|.+ +|.
T Consensus         4 i~~~l--NG~~~~~~v~p~~~Ll~~LR~~~~ltgtK~GC~~G~CGaCTVlv-dg~   55 (79)
T d1n62a2           4 IELTI--NGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL-DGM   55 (79)
T ss_dssp             EEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTE
T ss_pred             EEEEE--CCEEEEEecCCCCcHHHHHhhhcCCcccccCCccccccccEEEe-CCc
Confidence            44555  3446778999999999999864 87 699999999999999976 553

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Wolinella succinogenes [TaxId: 844]

Probab=98.22  E-value=6e-07  Score=60.89  Aligned_cols=51  Identities=24%  Similarity=0.499  Sum_probs=39.4

Q ss_pred             EEEEecCCCcHHHHHHH--c----CCCCCCCCCCccccCCeEEEEeCCccCCCCCCCChhcccCCeEEeEEeEEC
Q 032230           63 QEIECPDDTYILDAAED--A----GIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPT  131 (145)
Q Consensus        63 ~~~~v~~g~tLLeal~~--~----Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  131 (145)
                      ++++..++.|+|++|..  .    -+...++|+.|.||+|.++| .|.                 .+|||++++.
T Consensus        26 y~v~~~~~~tvld~L~~Ik~~~D~sl~fr~sCr~giCGsCam~I-NG~-----------------~~lAC~t~v~   82 (106)
T d2bs2b2          26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGR-----------------PSLACRTLTK   82 (106)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTE-----------------EEEGGGCBGG
T ss_pred             EEecCCCCCcHHHHHHHHHHhcCCcEEEEeCcCCCCCCcceEEE-CCc-----------------cccceeeeee
Confidence            45566788999999842  2    26789999999999999998 332                 4799998764

>d1jroa2 d.15.4.2 (A:1-84) Xanthine dehydrogenase chain A, N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine dehydrogenase chain A, N-terminal domain
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.11  E-value=3.6e-06  Score=54.69  Aligned_cols=48  Identities=15%  Similarity=0.362  Sum_probs=38.2

Q ss_pred             eEEEEECCCCeEEEEec-CCCcHHHHHHHcCC-CCCCCCCCccccCCeEEEE
Q 032230           52 YKVKLITPEGEQEIECP-DDTYILDAAEDAGI-DLPYSCRAGSCSTCAGKVV  101 (145)
Q Consensus        52 ~~Vti~~~~~~~~~~v~-~g~tLLeal~~~Gi-~i~~~C~~G~CgtC~v~v~  101 (145)
                      ++++|  ++..+++.+. ++++|++.+++.|+ .....|+.|.||.|.|.|-
T Consensus         3 i~f~v--NG~~~~~~~~~~~~~Ll~~LR~~~ltgtK~GC~~G~CGACtVlvd   52 (84)
T d1jroa2           3 IAFLL--NGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIR   52 (84)
T ss_dssp             EEEEE--TTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEEE
T ss_pred             EEEEE--CCEEEEEEcCCCCCcHHHHHHHCCCccCccCcCCcccceeEEEEE
Confidence            34454  3445667764 68999999999988 5899999999999999984

>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine oxidase, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.82  E-value=1.3e-05  Score=52.63  Aligned_cols=35  Identities=20%  Similarity=0.508  Sum_probs=31.1

Q ss_pred             EecCCCcHHHHHHHc-CC-CCCCCCCCccccCCeEEE
Q 032230           66 ECPDDTYILDAAEDA-GI-DLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        66 ~v~~g~tLLeal~~~-Gi-~i~~~C~~G~CgtC~v~v  100 (145)
                      .+++++|||+.|+++ |+ .....|+.|.||.|.|.+
T Consensus        17 ~~~p~~tLl~~LR~~~~ltGtK~GC~~G~CGACTVlv   53 (90)
T d1v97a2          17 NADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVML   53 (90)
T ss_dssp             TCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEE
T ss_pred             cCCCCCCHHHHHHhhcCCCccccCcCCcccceeEEEE
Confidence            367899999999875 88 589999999999999976

>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Succinate dehydogenase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=1.9e-05  Score=53.17  Aligned_cols=31  Identities=29%  Similarity=0.539  Sum_probs=25.5

Q ss_pred             CCcHHHHHHH---c--CCCCCCCCCCccccCCeEEE
Q 032230           70 DTYILDAAED---A--GIDLPYSCRAGSCSTCAGKV  100 (145)
Q Consensus        70 g~tLLeal~~---~--Gi~i~~~C~~G~CgtC~v~v  100 (145)
                      +.++|++|..   +  -+...++|+.|.||+|.++|
T Consensus        32 ~~~vl~~L~~i~e~D~sLsfr~sCr~giCGsCam~I   67 (106)
T d1nekb2          32 DMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM   67 (106)
T ss_dssp             CCBHHHHHHHHHHHCTTCCCCCCSSSSCSCTTEEEE
T ss_pred             cHHHHHHHHHHhccCCCEEEEcCCCCCCCCcceEEE
Confidence            3589998875   2  35678999999999999998

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=95.11  E-value=0.0026  Score=44.04  Aligned_cols=22  Identities=18%  Similarity=0.521  Sum_probs=19.0

Q ss_pred             CCCCCCccccCCeEEEEeCCcc
Q 032230           85 PYSCRAGSCSTCAGKVVSGSVD  106 (145)
Q Consensus        85 ~~~C~~G~CgtC~v~v~~G~~~  106 (145)
                      ...|+.|.||+|++++.+|...
T Consensus       121 ~m~Cg~GiCg~C~~~~~~g~~~  142 (160)
T d1ep3b2         121 RMACGIGACYACVEHDKEDESH  142 (160)
T ss_dssp             CCSSSSSSSCTTEEEETTEEEE
T ss_pred             cccCCCcccCcCcceecCCCCC
Confidence            5689999999999999887653