Citrus Sinensis ID: 032264


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
MSRFWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQHRKSSPTGTGKGKNKFVDFIMPKKGEHEAY
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccc
cccEEEEHHHHHHHHHHHHHHHcHHHHHHHHEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
MSRFWNLIYGVHSLAGPVLMLLYPLYASVVaiespskvddeqWLAYWILYSFLTLTEMVLqpvlewipIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQyrggkdhhqhqhrkssptgtgkgknkfvdfimpkkgeheay
MSRFWNLIYGVHSLAGPVLMLLYPLYASVVAIEspskvddeqWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYrggkdhhqhqhrkssptgtgkgknkfvDFIMPKKGEHEAY
MSRFWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQHRKSSPTGTGKGKNKFVDFIMPKKGEHEAY
***FWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQY****************************************
MSRFWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDH*****************NKFVDFI**********
MSRFWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQ********************GKGKNKFVDFIMPKKGEHEAY
*SRFWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQHRKSSPTGTGKGKNKFVDFIMP********
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSRFWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQHRKSSPTGTGKGKNKFVDFIMPKKGEHEAY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query144 2.2.26 [Sep-21-2011]
Q9FED2116 HVA22-like protein e OS=A yes no 0.791 0.982 0.701 6e-43
Q9S760135 HVA22-like protein d OS=A no no 0.923 0.985 0.562 8e-41
Q07764130 Protein HVA22 OS=Hordeum N/A no 0.805 0.892 0.637 6e-40
Q682H0158 HVA22-like protein f OS=A no no 0.729 0.664 0.509 6e-26
Q9S7V4177 HVA22-like protein a OS=A no no 0.638 0.519 0.576 7e-26
Q9SYX7167 HVA22-like protein b OS=A no no 0.597 0.514 0.569 2e-21
Q9S784184 HVA22-like protein c OS=A no no 0.673 0.527 0.515 4e-21
P0CN16206 Protein YOP1 OS=Cryptococ yes no 0.916 0.640 0.342 1e-15
P0CN17206 Protein YOP1 OS=Cryptococ N/A no 0.916 0.640 0.342 1e-15
Q4P0H0172 Protein YOP1 OS=Ustilago N/A no 0.798 0.668 0.327 5e-13
>sp|Q9FED2|HA22E_ARATH HVA22-like protein e OS=Arabidopsis thaliana GN=HVA22E PE=2 SV=1 Back     alignment and function desciption
 Score =  172 bits (436), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 80/114 (70%), Positives = 96/114 (84%)

Query: 1   MSRFWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVL 60
           M++ W  +  +HSLAGPV+MLLYPLYASV+AIESPSKVDDEQWLAYWILYSFLTL+E++L
Sbjct: 1   MTKLWTSLSALHSLAGPVVMLLYPLYASVIAIESPSKVDDEQWLAYWILYSFLTLSELIL 60

Query: 61  QPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQ 114
           Q +LEWIPIWY+ KLV  AWLVLPQFRGAAFIY + VR+Q ++Y   K   +HQ
Sbjct: 61  QSLLEWIPIWYTAKLVFVAWLVLPQFRGAAFIYNKVVREQFKKYGILKPKVEHQ 114





Arabidopsis thaliana (taxid: 3702)
>sp|Q9S760|HA22D_ARATH HVA22-like protein d OS=Arabidopsis thaliana GN=HVA22D PE=2 SV=1 Back     alignment and function description
>sp|Q07764|HVA22_HORVU Protein HVA22 OS=Hordeum vulgare GN=HVA22 PE=2 SV=1 Back     alignment and function description
>sp|Q682H0|HA22F_ARATH HVA22-like protein f OS=Arabidopsis thaliana GN=HVA22F PE=2 SV=1 Back     alignment and function description
>sp|Q9S7V4|HA22A_ARATH HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1 Back     alignment and function description
>sp|Q9SYX7|HA22B_ARATH HVA22-like protein b OS=Arabidopsis thaliana GN=HVA22B PE=2 SV=2 Back     alignment and function description
>sp|Q9S784|HA22C_ARATH HVA22-like protein c OS=Arabidopsis thaliana GN=HVA22C PE=2 SV=1 Back     alignment and function description
>sp|P0CN16|YOP1_CRYNJ Protein YOP1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=YOP1 PE=3 SV=1 Back     alignment and function description
>sp|P0CN17|YOP1_CRYNB Protein YOP1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=YOP1 PE=3 SV=1 Back     alignment and function description
>sp|Q4P0H0|YOP1_USTMA Protein YOP1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=YOP1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query144
357465013154 HVA22-like protein e [Medicago truncatul 0.993 0.928 0.664 7e-51
388512045152 unknown [Lotus japonicus] 0.993 0.940 0.673 1e-50
351726453146 uncharacterized protein LOC100305818 [Gl 0.986 0.972 0.675 6e-50
356516527146 PREDICTED: protein HVA22-like [Glycine m 0.986 0.972 0.668 3e-49
224134018175 predicted protein [Populus trichocarpa] 0.958 0.788 0.719 1e-48
225456377141 PREDICTED: HVA22-like protein e [Vitis v 0.972 0.992 0.675 3e-47
255540165114 Protein HVA22, putative [Ricinus communi 0.791 1.0 0.756 4e-45
297795871116 hypothetical protein ARALYDRAFT_495134 [ 0.791 0.982 0.719 3e-42
449440530118 PREDICTED: HVA22-like protein d-like [Cu 0.812 0.991 0.717 4e-42
18423191116 HVA22-like protein e [Arabidopsis thalia 0.791 0.982 0.701 4e-41
>gi|357465013|ref|XP_003602788.1| HVA22-like protein e [Medicago truncatula] gi|355491836|gb|AES73039.1| HVA22-like protein e [Medicago truncatula] Back     alignment and taxonomy information
 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 103/155 (66%), Positives = 120/155 (77%), Gaps = 12/155 (7%)

Query: 1   MSRFWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVL 60
           M++ W LI  +HSLAGPV+ LLYPLYASVVAIESPSK+DDEQWLAYWI+YSFLTL EM++
Sbjct: 1   MTKLWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLM 60

Query: 61  QPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQHR---- 116
           QP LEWIPIWY VKL++AAWLVLPQF GAA++YERFVR  IR+Y   K+H +  H     
Sbjct: 61  QPALEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVRDHIRKYVTEKEHQRVHHHPPEN 120

Query: 117 -------KSSPTGTGKGKNKFVDFIMPKKGEHEAY 144
                  K SPTG  K K KFVDFI+PKKG+ EAY
Sbjct: 121 NQQQKQNKKSPTG-AKTKKKFVDFIIPKKGDQEAY 154




Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512045|gb|AFK44084.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351726453|ref|NP_001237127.1| uncharacterized protein LOC100305818 [Glycine max] gi|255626697|gb|ACU13693.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356516527|ref|XP_003526945.1| PREDICTED: protein HVA22-like [Glycine max] Back     alignment and taxonomy information
>gi|224134018|ref|XP_002321716.1| predicted protein [Populus trichocarpa] gi|222868712|gb|EEF05843.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225456377|ref|XP_002284092.1| PREDICTED: HVA22-like protein e [Vitis vinifera] gi|297734449|emb|CBI15696.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255540165|ref|XP_002511147.1| Protein HVA22, putative [Ricinus communis] gi|223550262|gb|EEF51749.1| Protein HVA22, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297795871|ref|XP_002865820.1| hypothetical protein ARALYDRAFT_495134 [Arabidopsis lyrata subsp. lyrata] gi|297311655|gb|EFH42079.1| hypothetical protein ARALYDRAFT_495134 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449440530|ref|XP_004138037.1| PREDICTED: HVA22-like protein d-like [Cucumis sativus] gi|449523922|ref|XP_004168972.1| PREDICTED: HVA22-like protein d-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18423191|ref|NP_568744.1| HVA22-like protein e [Arabidopsis thaliana] gi|57012614|sp|Q9FED2.1|HA22E_ARATH RecName: Full=HVA22-like protein e; Short=AtHVA22e gi|9931544|gb|AAG02213.1|AF290892_1 AtHVA22e [Arabidopsis thaliana] gi|11225589|gb|AAG33060.1|AF313484_1 AtHVA22e [Arabidopsis thaliana] gi|21537153|gb|AAM61494.1| abscisic acid-induced-like protein [Arabidopsis thaliana] gi|114050591|gb|ABI49445.1| At5g50720 [Arabidopsis thaliana] gi|210062170|gb|ACJ06134.1| HVA22E [Arabidopsis thaliana] gi|210062172|gb|ACJ06135.1| HVA22E [Arabidopsis thaliana] gi|210062174|gb|ACJ06136.1| HVA22E [Arabidopsis thaliana] gi|210062176|gb|ACJ06137.1| HVA22E [Arabidopsis thaliana] gi|210062178|gb|ACJ06138.1| HVA22E [Arabidopsis thaliana] gi|210062180|gb|ACJ06139.1| HVA22E [Arabidopsis thaliana] gi|210062182|gb|ACJ06140.1| HVA22E [Arabidopsis thaliana] gi|210062184|gb|ACJ06141.1| HVA22E [Arabidopsis thaliana] gi|210062186|gb|ACJ06142.1| HVA22E [Arabidopsis thaliana] gi|210062188|gb|ACJ06143.1| HVA22E [Arabidopsis thaliana] gi|210062190|gb|ACJ06144.1| HVA22E [Arabidopsis thaliana] gi|210062192|gb|ACJ06145.1| HVA22E [Arabidopsis thaliana] gi|210062194|gb|ACJ06146.1| HVA22E [Arabidopsis thaliana] gi|210062196|gb|ACJ06147.1| HVA22E [Arabidopsis thaliana] gi|210062198|gb|ACJ06148.1| HVA22E [Arabidopsis thaliana] gi|210062200|gb|ACJ06149.1| HVA22E [Arabidopsis thaliana] gi|210062202|gb|ACJ06150.1| HVA22E [Arabidopsis thaliana] gi|210062204|gb|ACJ06151.1| HVA22E [Arabidopsis thaliana] gi|210062206|gb|ACJ06152.1| HVA22E [Arabidopsis thaliana] gi|210062208|gb|ACJ06153.1| HVA22E [Arabidopsis thaliana] gi|210062210|gb|ACJ06154.1| HVA22E [Arabidopsis thaliana] gi|210062212|gb|ACJ06155.1| HVA22E [Arabidopsis thaliana] gi|210062214|gb|ACJ06156.1| HVA22E [Arabidopsis thaliana] gi|210062216|gb|ACJ06157.1| HVA22E [Arabidopsis thaliana] gi|210062218|gb|ACJ06158.1| HVA22E [Arabidopsis thaliana] gi|210062220|gb|ACJ06159.1| HVA22E [Arabidopsis thaliana] gi|210062222|gb|ACJ06160.1| HVA22E [Arabidopsis thaliana] gi|210062224|gb|ACJ06161.1| HVA22E [Arabidopsis thaliana] gi|210062226|gb|ACJ06162.1| HVA22E [Arabidopsis thaliana] gi|210062228|gb|ACJ06163.1| HVA22E [Arabidopsis thaliana] gi|210062230|gb|ACJ06164.1| HVA22E [Arabidopsis thaliana] gi|210062234|gb|ACJ06166.1| HVA22E [Arabidopsis thaliana] gi|332008600|gb|AED95983.1| HVA22-like protein e [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query144
TAIR|locus:2163290116 HVA22E "AT5G50720" [Arabidopsi 0.791 0.982 0.701 8.4e-42
TAIR|locus:2117318135 HVA22D "AT4G24960" [Arabidopsi 0.923 0.985 0.562 1.1e-39
TAIR|locus:2019225177 HVA22A "AT1G74520" [Arabidopsi 0.590 0.480 0.611 7.3e-27
TAIR|locus:2052339158 HVA22F "AT2G42820" [Arabidopsi 0.722 0.658 0.514 2.5e-26
TAIR|locus:2154139167 HVA22B "AT5G62490" [Arabidopsi 0.590 0.508 0.576 7.8e-23
TAIR|locus:2205055184 HVA22C "AT1G69700" [Arabidopsi 0.638 0.5 0.532 4.3e-22
WB|WBGene00022127183 yop-1 [Caenorhabditis elegans 0.708 0.557 0.371 3.3e-15
UNIPROTKB|Q96HR9184 REEP6 "Receptor expression-enh 0.694 0.543 0.382 4.2e-15
ZFIN|ZDB-GENE-040912-98208 reep6 "receptor accessory prot 0.729 0.504 0.355 1.4e-14
ASPGD|ASPL0000048393169 AN2279 [Emericella nidulans (t 0.652 0.556 0.36 2.3e-14
TAIR|locus:2163290 HVA22E "AT5G50720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 80/114 (70%), Positives = 96/114 (84%)

Query:     1 MSRFWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVL 60
             M++ W  +  +HSLAGPV+MLLYPLYASV+AIESPSKVDDEQWLAYWILYSFLTL+E++L
Sbjct:     1 MTKLWTSLSALHSLAGPVVMLLYPLYASVIAIESPSKVDDEQWLAYWILYSFLTLSELIL 60

Query:    61 QPVLEWIPIWYSVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQ 114
             Q +LEWIPIWY+ KLV  AWLVLPQFRGAAFIY + VR+Q ++Y   K   +HQ
Sbjct:    61 QSLLEWIPIWYTAKLVFVAWLVLPQFRGAAFIYNKVVREQFKKYGILKPKVEHQ 114




GO:0003674 "molecular_function" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0009409 "response to cold" evidence=IEP;RCA
GO:0009414 "response to water deprivation" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA
GO:0042538 "hyperosmotic salinity response" evidence=IEP
GO:0009269 "response to desiccation" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
TAIR|locus:2117318 HVA22D "AT4G24960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019225 HVA22A "AT1G74520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052339 HVA22F "AT2G42820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154139 HVA22B "AT5G62490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205055 HVA22C "AT1G69700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00022127 yop-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q96HR9 REEP6 "Receptor expression-enhancing protein 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-98 reep6 "receptor accessory protein 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000048393 AN2279 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q07764HVA22_HORVUNo assigned EC number0.63790.80550.8923N/Ano
Q9FED2HA22E_ARATHNo assigned EC number0.70170.79160.9827yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query144
pfam0313494 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family 3e-34
COG5052186 COG5052, YOP1, Protein involved in membrane traffi 4e-19
>gnl|CDD|217381 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family Back     alignment and domain information
 Score =  114 bits (288), Expect = 3e-34
 Identities = 43/86 (50%), Positives = 59/86 (68%)

Query: 13 SLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYS 72
           L   ++  LYP YAS  A+ES  K DD QWL YW++YSFLTL E     +L WIP +Y 
Sbjct: 6  RLLSNLIGFLYPAYASYKALESKDKEDDTQWLTYWVVYSFLTLFESFSDIILSWIPFYYE 65

Query: 73 VKLVLAAWLVLPQFRGAAFIYERFVR 98
          +KL+   WLVLP+ +GA++IY++F+R
Sbjct: 66 LKLLFLVWLVLPKTQGASYIYDKFIR 91


This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein. Length = 94

>gnl|CDD|227385 COG5052, YOP1, Protein involved in membrane traffic [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 144
KOG1725186 consensus Protein involved in membrane traffic (YO 99.97
PF0313494 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IP 99.97
KOG1726225 consensus HVA22/DP1 gene product-related proteins 99.96
COG5052186 YOP1 Protein involved in membrane traffic [Intrace 99.88
KOG1726225 consensus HVA22/DP1 gene product-related proteins 89.78
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
Probab=99.97  E-value=3.4e-31  Score=207.95  Aligned_cols=111  Identities=45%  Similarity=0.785  Sum_probs=105.8

Q ss_pred             HHHHHHhHHHHHHhHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhc
Q 032264            4 FWNLIYGVHSLAGPVLMLLYPLYASVVAIESPSKVDDEQWLAYWILYSFLTLTEMVLQPVLEWIPIWYSVKLVLAAWLVL   83 (144)
Q Consensus         4 ~~~ll~~l~~l~~~~vg~lyPay~S~kaL~~~~~~~~~~WL~YWiv~a~~~~~E~~~~~il~wiPfY~~iKl~flvwL~~   83 (144)
                      +|-+++..+.++|+++|++||+|+|++|+|++++.|+++||+||++||++.++|...+.+++|+|+||++|++|++||.+
T Consensus        50 v~l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~l  129 (186)
T KOG1725|consen   50 VYLLFGSGGPLLCNLIGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVL  129 (186)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHhHHHhhhcccchhhhh
Q 032264           84 PQFRGAAFIYERFVRQQIRQYRGGKDHHQHQ  114 (144)
Q Consensus        84 P~~~GA~~lY~~~i~P~l~~~e~~ID~~l~~  114 (144)
                      |+++||..+|+++++|++.++..++|+..+.
T Consensus       130 P~~~Ga~~iY~~~vrp~~~~~~~~~~~~~~~  160 (186)
T KOG1725|consen  130 PQFNGAAIIYNHIVRPFFLKHSREIDDIEDA  160 (186)
T ss_pred             cCCCCceeeechhhhhhhhhhhhhhhhhhhc
Confidence            9999999999999999999999999988754



>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes Back     alignment and domain information
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms] Back     alignment and domain information
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00