Citrus Sinensis ID: 032274

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MNRLFHPHLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGNLHLVFGSL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHcccccccEEEHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccccccccEcccccccEEEEEEEcccEcccccccccccccHHccHHHHHHcccccccccccccccHHHHHHHHHHccccEEEEccccEEEEEEEEEccHHHHHHHHHHHHHHHHHccccEEEEEcc
Coil and Loop (DISEMBL)
mnrlfhphllslsrpqvplRSVFESLFarngrsnirVTEIFQNRVGLflsrnslygfrtfctgqdlttkkcvpcdtkdlrpmaedsakhlmpkvVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGNLHLVFGSL
Flexible Loop (DISEMBL)
mnrlfhphllslsrpqvpLRSVFESLfarngrsnirvtEIFQNRVGLFLSRNSLYGFrtfctgqdlttkkcvpcDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGNLHLVFGSL
Low Complexity Region (SEG)
MNRLFHPHLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGNLHLVFGSL
Disordered region (IsUnstruct)
***************QVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVPCDTKDLRP*****AKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGNLHLVF***
Disordered Region (DISOPRED)
******PHLLSLSRPQVPLRSVFESLFARNGRSNIRVTEI************************DLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGNLHLVFGSL
Disordered Region (DISEMBL)
MNRLFHPHLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGNLHLVFGSL
Disordered Region (DISPRO)
*NRLFHPHLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGNLHLVFGSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRLFHPHLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGNLHLVFGSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
B3ECB9	113	Putative pterin-4-alpha-c	yes	no	0.493	0.628	0.319	3e-05
Q8KFI4	111	Putative pterin-4-alpha-c	yes	no	0.486	0.630	0.352	6e-05
B3QQ83	111	Putative pterin-4-alpha-c	yes	no	0.486	0.630	0.323	0.0001
Q3B6N5	114	Putative pterin-4-alpha-c	yes	no	0.479	0.605	0.3	0.0001
Q3J910	113	Putative pterin-4-alpha-c	yes	no	0.5	0.637	0.287	0.0002

>sp|B3ECB9|PHS_CHLL2 Putative pterin-4-alpha-carbinolamine dehydratase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=Clim_1125 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 65  DLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELF 124
           +L    CVPC  +   P+A D    L  ++  W++V E G+++L R+     F + L   
Sbjct: 3   ELKHMACVPC-AEAGSPLAADEIDRLRQELPDWEVVTEEGMVRLRRTFTFPDFGQALAFT 61

Query: 125 KLVADVAEAEGN 136
             V ++AEAEG+
Sbjct: 62  NRVGELAEAEGH 73

Chlorobium limicola (strain DSM 245 / NBRC 103803) (taxid: 290315)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 9EC: 6

>sp|Q8KFI4|PHS_CHLTE Putative pterin-4-alpha-carbinolamine dehydratase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT0342 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 66  LTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFK 125
           L  K CVPC+     PMA +  +  +  +  W LV+++G  KL R    K F   L+   
Sbjct: 4   LENKHCVPCE-GTAAPMASEELQRQLSSLPEWTLVDDSGTSKLVRVFTFKDFQSALDFTN 62

Query: 126 LVADVAEAEGN 136
            V  +AEAEG+
Sbjct: 63  RVGQLAEAEGH 73

Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

>sp|B3QQ83|PHS_CHLP8 Putative pterin-4-alpha-carbinolamine dehydratase OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_1693 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 66  LTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFK 125
           L  K CVPC+  +  PMA +  +  +  +  W++V+++G  KL R    K F   L+   
Sbjct: 4   LEKKHCVPCEGTE-APMAPEELQRQLSHIPDWNVVDDSGTPKLVRVFTFKDFNDALDFTV 62

Query: 126 LVADVAEAEGN 136
            V  +AE+EG+
Sbjct: 63  RVGQLAESEGH 73

Chlorobaculum parvum (strain NCIB 8327) (taxid: 517417)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

>sp|Q3B6N5|PHS_PELLD Putative pterin-4-alpha-carbinolamine dehydratase OS=Pelodictyon luteolum (strain DSM 273) GN=Plut_0106 PE=3 SV=2

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 65  DLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELF 124
           +L   KCV C ++ L P+AE  ++ L+ ++  W +V+E+G+ +L R+   ++F + +   
Sbjct: 3   ELNKTKCVSC-SEGLPPLAERESEELLKEIPEWVIVSEDGVSRLVRTFTFENFREAMAFA 61

Query: 125 KLVADVAEAE 134
             V ++AE+E
Sbjct: 62  GSVGELAESE 71

Pelodictyon luteolum (strain DSM 273) (taxid: 319225)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

>sp|Q3J910|PHS_NITOC Putative pterin-4-alpha-carbinolamine dehydratase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=Noc_2226 PE=3 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 64  QDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLEL 123
           +DL+T +C  C  +  R ++ED  + L P+V  W+++ E+ + +L R  K  +F + L+ 
Sbjct: 2   EDLSTMQCEACRPEAPR-VSEDEIRELHPQVPDWEIIEEDEVRRLQRVFKFGNFAEALDF 60

Query: 124 FKLVADVAEAEGN 136
                 +AE  G+
Sbjct: 61  TNKTGALAEEAGH 73

Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) (taxid: 323261)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
225463402	176	PREDICTED: putative pterin-4-alpha-carbi	0.868	0.710	0.640	4e-39
449433692	195	PREDICTED: putative pterin-4-alpha-carbi	0.881	0.651	0.561	2e-33
297851402	187	predicted protein [Arabidopsis lyrata su	0.979	0.754	0.524	4e-33
30690915	187	transcriptional coactivator/pterin dehyd	0.972	0.748	0.517	1e-32
26449459	187	unknown protein [Arabidopsis thaliana] g	0.972	0.748	0.510	4e-32
356549265	184	PREDICTED: putative pterin-4-alpha-carbi	0.930	0.728	0.462	4e-25
224116446	124	predicted protein [Populus trichocarpa]	0.527	0.612	0.721	5e-24
356555382	180	PREDICTED: putative pterin-4-alpha-carbi	0.888	0.711	0.442	1e-22
224116738	124	predicted protein [Populus trichocarpa]	0.534	0.620	0.675	2e-22
147790993	156	hypothetical protein VITISV_009254 [Viti	0.527	0.487	0.683	2e-22

>gi|225463402|ref|XP_002273897.1| PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase isoform 1 [Vitis vinifera] gi|297740640|emb|CBI30822.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 100/128 (78%), Gaps = 3/128 (2%)

Query: 16  QVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVPCD 75
           Q PL S+F SL   +GRS+I+VT+I  +RV +  +R SL GFRTFCTG+DL+ KKCVPC+
Sbjct: 6   QFPLTSLFRSLSGAHGRSSIQVTKILHDRVEVSSNRKSLNGFRTFCTGEDLSIKKCVPCN 65

Query: 76  TKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG 135
           + D+RPM E +A  L+PKV GW+LVNE   LKLNRS KVKSFTKGLELF+ VADVAEAEG
Sbjct: 66  SNDIRPMTEQAANELIPKVPGWNLVNETDTLKLNRSWKVKSFTKGLELFQAVADVAEAEG 125

Query: 136 ---NLHLV 140
              +LHLV
Sbjct: 126 HHPDLHLV 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433692|ref|XP_004134631.1| PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase-like [Cucumis sativus] gi|449505947|ref|XP_004162611.1| PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase-like [Cucumis sativus]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/130 (56%), Positives = 96/130 (73%), Gaps = 3/130 (2%)

Query: 14  RPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVP 73
           + +VP  S+F ++   +GR   R+T I    VGL  +R  L GFR  CTG+DLTTKKCVP
Sbjct: 17  KAKVPFPSLFHTISRSHGRPMSRITGICWEHVGLPSTRKPLSGFRMLCTGEDLTTKKCVP 76

Query: 74  CDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEA 133
           C++ DLRPM ED+AK L+ ++V W+LVNE+  LKL RSLKVKSF KG++LF+L+A+VAEA
Sbjct: 77  CNSNDLRPMTEDAAKRLIRELVDWNLVNEDSKLKLRRSLKVKSFLKGMDLFQLIAEVAEA 136

Query: 134 EG---NLHLV 140
           EG   +LHLV
Sbjct: 137 EGHHPDLHLV 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851402|ref|XP_002893582.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297339424|gb|EFH69841.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 100/145 (68%), Gaps = 4/145 (2%)

Query: 1   MNRLFHPHLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTF 60
           M+RL  P L S+SR QVP  S+  +L+ R+ R     +++ Q+ V    +  S  G RTF
Sbjct: 1   MSRLLLPKLFSISRTQVPAASLLNNLYGRHKRFVHWTSKMSQDSVISSTAGGSASGARTF 60

Query: 61  CTGQDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKG 120
           C+ +DL  KKCVPC++KDLRPM E SA+ L+ KV GWDL N+N  LKL+RS +VKSFTKG
Sbjct: 61  CSLEDLLAKKCVPCNSKDLRPMTEQSAQDLLQKVTGWDLANDNDTLKLHRSWRVKSFTKG 120

Query: 121 LELFKLVADVAEAEG---NLHLVFG 142
           L+ FK VAD+AE+EG   +LHL FG
Sbjct: 121 LDFFKRVADIAESEGHHPDLHL-FG 144

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690915|ref|NP_174274.2| transcriptional coactivator/pterin dehydratase [Arabidopsis thaliana] gi|42794937|gb|AAS45834.1| PCD/DCoH-like protein 2 [Arabidopsis thaliana] gi|332193012|gb|AEE31133.1| transcriptional coactivator/pterin dehydratase [Arabidopsis thaliana]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/143 (51%), Positives = 98/143 (68%), Gaps = 3/143 (2%)

Query: 1   MNRLFHPHLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTF 60
           M+RL  P L S+SR QVP  S+F +L+ R+ R     +++  + V    +  S  G RTF
Sbjct: 1   MSRLLLPKLFSISRTQVPAASLFNNLYRRHKRFVHWTSKMSTDSVRSSTTGGSASGARTF 60

Query: 61  CTGQDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKG 120
           C+  DL+TKKCVPC+ KDLR M E SA+ L+ KV GWDL N+N  LKL+RS +VKSFTKG
Sbjct: 61  CSLADLSTKKCVPCNAKDLRAMTEQSAQDLLQKVAGWDLANDNDTLKLHRSWRVKSFTKG 120

Query: 121 LELFKLVADVAEAEG---NLHLV 140
           L+ F+ VAD+AE+EG   +LHLV
Sbjct: 121 LDFFQRVADIAESEGHHPDLHLV 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26449459|dbj|BAC41856.1| unknown protein [Arabidopsis thaliana] gi|28372932|gb|AAO39948.1| At1g29810 [Arabidopsis thaliana]

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 97/143 (67%), Gaps = 3/143 (2%)

Query: 1   MNRLFHPHLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTF 60
           M+RL  P L S+SR QVP  S+F +L+ R+ R     +++  + V    +  S  G RTF
Sbjct: 1   MSRLLLPKLFSISRTQVPAASLFNNLYRRHKRFVHWTSKMSTDSVRSSTTGGSASGARTF 60

Query: 61  CTGQDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKG 120
           C+  DL+TKKCVPC+ KDLR M E SA+ L+ KV GWDL N+N  LKL+RS +VKSFTKG
Sbjct: 61  CSLADLSTKKCVPCNAKDLRAMTEQSAQDLLQKVAGWDLANDNDTLKLHRSWRVKSFTKG 120

Query: 121 LELFKLVADVAEAEG---NLHLV 140
           L+ F+ V D+AE+EG   +LHLV
Sbjct: 121 LDFFQRVTDIAESEGHHPDLHLV 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549265|ref|XP_003543016.1| PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase-like [Glycine max]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 102/147 (69%), Gaps = 13/147 (8%)

Query: 1   MNRLF---HPHLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGF 57
           MNRL    HP LL+LS+P  PL    ++ +     + I  +E+++ +    +S  S++  
Sbjct: 1   MNRLLLVRHP-LLALSKP--PLSPFSQTYYYSYTPARIN-SELYKIKDPPGVS--SVHTS 54

Query: 58  RTFCT-GQDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKS 116
            TFCT  +DL+T+ CVPC+TKDL+PM ED+A+ ++ ++  W+LVNE+G+LKL RS KVK+
Sbjct: 55  STFCTTNKDLSTENCVPCNTKDLQPMTEDAARTMLQQIAQWNLVNEDGVLKLRRSWKVKT 114

Query: 117 FTKGLELFKLVADVAEAEG---NLHLV 140
           FTKGLE F+++A +AEAEG   +LHLV
Sbjct: 115 FTKGLEFFRIIAGLAEAEGHHPDLHLV 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116446|ref|XP_002317303.1| predicted protein [Populus trichocarpa] gi|222860368|gb|EEE97915.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 65/79 (82%), Gaps = 3/79 (3%)

Query: 65  DLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELF 124
           DL  KKCVPC++KDL+ M E+SA  L+ KV GW+LVNENG LKLNRS KVKSFTKGLELF
Sbjct: 3   DLAAKKCVPCNSKDLQAMTEESANDLLSKVAGWNLVNENGTLKLNRSWKVKSFTKGLELF 62

Query: 125 KLVADVAEAEG---NLHLV 140
           KLV +VAEAEG   +LHLV
Sbjct: 63  KLVGNVAEAEGHHPDLHLV 81

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555382|ref|XP_003546011.1| PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase-like [Glycine max]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 94/149 (63%), Gaps = 21/149 (14%)

Query: 1   MNRLF---HPHLLSLSR--PQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLY 55
           MNRL    HP LL+LS+  P  P    +   +    R N ++ +I          ++   
Sbjct: 1   MNRLLLVRHP-LLALSKLPPLSPFSQTYYYSYTPT-RINSQIYKI----------KDPPR 48

Query: 56  GFRTFCT-GQDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKV 114
               FCT  ++L++KKCVPC+TKDL+PM ED+A  L+ ++  W+LVNE G+LKL RS KV
Sbjct: 49  TSAAFCTTNKELSSKKCVPCNTKDLQPMTEDAAGTLLSQIAQWNLVNEGGVLKLRRSWKV 108

Query: 115 KSFTKGLELFKLVADVAEAEG---NLHLV 140
           K+FTKGLE F+++AD+A+AEG   +LHLV
Sbjct: 109 KTFTKGLEFFRIIADLADAEGHHPDLHLV 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116738|ref|XP_002331865.1| predicted protein [Populus trichocarpa] gi|222875383|gb|EEF12514.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 63/80 (78%), Gaps = 3/80 (3%)

Query: 64  QDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLEL 123
            DL  KKCVPC++KDL+ M E+SA   + KV GW+LVNENG LKLNRS KVKSFTKGLEL
Sbjct: 2   DDLAAKKCVPCNSKDLQAMTEESATEFLLKVAGWNLVNENGTLKLNRSWKVKSFTKGLEL 61

Query: 124 FKLVADVAEAEG---NLHLV 140
           F+LV +VAE EG   +LHLV
Sbjct: 62  FQLVGNVAETEGHHPDLHLV 81

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790993|emb|CAN63785.1| hypothetical protein VITISV_009254 [Vitis vinifera]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 64/79 (81%), Gaps = 3/79 (3%)

Query: 65  DLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELF 124
           +L+ KKCVPC++ D+RPM E +A  L+PKV GW+LVNE   LKLNRS KVKSFTKGLELF
Sbjct: 35  NLSIKKCVPCNSNDIRPMTEQAANELIPKVPGWNLVNETDTLKLNRSWKVKSFTKGLELF 94

Query: 125 KLVADVAEAEG---NLHLV 140
           + VADVAEAEG   +LHLV
Sbjct: 95  QAVADVAEAEGHHPDLHLV 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2019297	187	AT1G29810 "AT1G29810" [Arabido	0.972	0.748	0.517	7.7e-32
TAIR|locus:2176182	220	AT5G51110 [Arabidopsis thalian	0.506	0.331	0.397	1.8e-07

TAIR|locus:2019297 AT1G29810 "AT1G29810" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 74/143 (51%), Positives = 98/143 (68%)

Query:     1 MNRLFHPHLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTF 60
             M+RL  P L S+SR QVP  S+F +L+ R+ R     +++  + V    +  S  G RTF
Sbjct:     1 MSRLLLPKLFSISRTQVPAASLFNNLYRRHKRFVHWTSKMSTDSVRSSTTGGSASGARTF 60

Query:    61 CTGQDLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKG 120
             C+  DL+TKKCVPC+ KDLR M E SA+ L+ KV GWDL N+N  LKL+RS +VKSFTKG
Sbjct:    61 CSLADLSTKKCVPCNAKDLRAMTEQSAQDLLQKVAGWDLANDNDTLKLHRSWRVKSFTKG 120

Query:   121 LELFKLVADVAEAEGN---LHLV 140
             L+ F+ VAD+AE+EG+   LHLV
Sbjct:   121 LDFFQRVADIAESEGHHPDLHLV 143

GO:0004160 "dihydroxy-acid dehydratase activity" evidence=ISS

GO:0006729 "tetrahydrobiopterin biosynthetic process" evidence=IEA

GO:0008124 "4-alpha-hydroxytetrahydrobiopterin dehydratase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2176182 AT5G51110 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 31/78 (39%), Positives = 45/78 (57%)

Query:    66 LTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLV-NENGILKLNRSLKVKSFTKGLELF 124
             L+  +C P  +    P++ D A+ L+ KV+GW +V NE G LK+    KV+ F  G+EL 
Sbjct:    99 LSQLQCSPVSSSQ-PPLSGDDARTLLHKVLGWSIVDNEAGGLKIRCMWKVRDFGCGVELI 157

Query:   125 KLVADVAEAEGN---LHL 139
               +  VAEA G+   LHL
Sbjct:   158 NRIHKVAEASGHYPSLHL 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       144   0.00091  102 3  11 22  0.40    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  128 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.35u 0.17s 13.52t   Elapsed:  00:00:00
  Total cpu time:  13.36u 0.17s 13.53t   Elapsed:  00:00:00
  Start:  Fri May 10 23:55:50 2013   End:  Fri May 10 23:55:50 2013

GO:0006729 "tetrahydrobiopterin biosynthetic process" evidence=IEA

GO:0008124 "4-alpha-hydroxytetrahydrobiopterin dehydratase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
pfam01329	96	pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine	2e-07
cd00913	76	cd00913, PCD_DCoH_subfamily_a, PCD_DCoH: The bifun	1e-06
cd00488	75	cd00488, PCD_DCoH, PCD_DCoH: The bifunctional prot	0.001

>gnl|CDD|216436 pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine dehydratase

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 77  KDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG- 135
               P++E+  + L+ ++ GW LV+      L R+ K K F + L     VA++AEAEG 
Sbjct: 1   GGAPPLSEEEIEELLAELPGWSLVDG---DALTRTFKFKDFKEALAFVNAVAELAEAEGH 57

Query: 136 --NLHLVFGS 143
             +L  V+  
Sbjct: 58  HPDLTNVYNR 67

Pterin 4 alpha carbinolamine dehydratase is also known as DCoH (dimerisation cofactor of hepatocyte nuclear factor 1-alpha). Length = 96

>gnl|CDD|238455 cd00913, PCD_DCoH_subfamily_a, PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 96  GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFG 142
           GW+L ++   LKL R+ + K+F + LE    V ++AEAEG   +L L +G
Sbjct: 1   GWELADD--GLKLERTFRFKNFVEALEFVNAVGEIAEAEGHHPDLSLGWG 48

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Length = 76

>gnl|CDD|238272 cd00488, PCD_DCoH, PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 96  GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG 135
           GW+L + +    L R+ K K F + +     VA++AEA  
Sbjct: 1   GWELADGD---ALERTFKFKDFKEAIAFVNRVAELAEALN 37

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carcinomas and in malignant melanomas. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
COG2154	101	Pterin-4a-carbinolamine dehydratase [Coenzyme meta	99.73
PRK00823	97	phhB pterin-4-alpha-carbinolamine dehydratase; Val	99.71
PF01329	95	Pterin_4a: Pterin 4 alpha carbinolamine dehydratas	99.7
cd00914	76	PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional pr	99.35
cd00913	76	PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional pr	99.28
cd00488	75	PCD_DCoH PCD_DCoH: The bifunctional protein pterin	99.24
KOG4073	104	consensus Pterin carbinolamine dehydratase PCBD/di	99.2

>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]

Probab=99.73  E-value=1.3e-17  Score=122.38  Aligned_cols=65  Identities=23%  Similarity=0.545  Sum_probs=60.7

Q ss_pred             CCCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           78 DLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        78 ~~~~Ls~~EI~~lL~~LpGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      ..+.|+++|+.++|.++|||.+.++  ..+|+|+|+|+||.+|++|||+||.+||++|   ||.+.||+|
T Consensus         2 ~~~~lt~~~~~~~l~~l~gW~l~~~--~~~l~r~f~FknF~~a~~F~~~vA~~Ae~~~HHPdi~~~y~~V   69 (101)
T COG2154           2 RASKLTDEELAELLRALPGWELADD--GAKLTRTFKFKNFKQAIAFVNRVAEIAEKLNHHPDIEVVYNRV   69 (101)
T ss_pred             CccccCHHHHHHHhcCCCCCEEecC--cceEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCeEEEeeeE
Confidence            3678999999999999999999974  3599999999999999999999999999999   999999986

>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated

Probab=99.71  E-value=3.2e-17  Score=118.08  Aligned_cols=65  Identities=25%  Similarity=0.552  Sum_probs=60.0

Q ss_pred             CCCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           78 DLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        78 ~~~~Ls~~EI~~lL~~LpGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      .+++|+++|++++|++||||++.++  +.+|+|+|+|+||.+|++|+|+||.+||++|   ||+++|++|
T Consensus         2 ~~~~Ls~~ei~~~l~~l~gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~~V   69 (97)
T PRK00823          2 MAEKLSDEEIAELLPQLPGWTLVGD--RDAIERTFKFKNFNEAFAFMNRVAEIAEEEDHHPDWFNVYNRV   69 (97)
T ss_pred             CCCCCCHHHHHHHhhcCCCCeEeCC--cCeEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCCEEEEcCEE
Confidence            3689999999999999999999753  3589999999999999999999999999999   999999975

>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []

Probab=99.70  E-value=2.3e-17  Score=118.28  Aligned_cols=63  Identities=27%  Similarity=0.557  Sum_probs=56.8

Q ss_pred             CCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           79 LRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        79 ~~~Ls~~EI~~lL~~LpGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      +++||++||+++|++||||++.+ +  .+|+|+|+|+||.+|++|||+||.+||++|   ||+++|++|
T Consensus         2 ~~~Ls~~ei~~~L~~l~~W~~~~-~--~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~~V   67 (95)
T PF01329_consen    2 APPLSEEEIAEALAELPGWKLDG-G--GRLERTFKFKDFAEAVEFVNRVAALAEEENHHPDISLGYNRV   67 (95)
T ss_dssp             -SB-THHHHHHHHHTSTTSEEET-S--SEEEEEEE-SSHHHHHHHHHHHHHHHHHHT---EEEEETTEE
T ss_pred             CCCCCHHHHHHhhhcCcCCEECC-C--CcEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCeEecCCcE
Confidence            58999999999999999999997 3  489999999999999999999999999999   999999975

X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....

>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=99.35  E-value=2e-12  Score=89.38  Aligned_cols=47  Identities=28%  Similarity=0.477  Sum_probs=43.1

Q ss_pred             CCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           96 GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        96 GW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      ||++.++.  .+|+|+|+|++|.+|++|+|+||.+||++|   ||+++||+|
T Consensus         1 gW~~~~~~--~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHPdi~~~~~~V   50 (76)
T cd00914           1 GWTLVDGR--DAIHKSFKFKDFNEAFGFMTRVALEAEKMNHHPEWFNVYNKV   50 (76)
T ss_pred             CCeEeCCC--CeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCEEEeccEE
Confidence            79998642  489999999999999999999999999999   999999975

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon

>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=99.28  E-value=6.2e-12  Score=86.85  Aligned_cols=47  Identities=43%  Similarity=0.851  Sum_probs=43.0

Q ss_pred             CCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           96 GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        96 GW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      ||++.++  ..+|+|+|+|++|.+|++|+|+||.+||++|   ||+++|++|
T Consensus         1 gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~~~V   50 (76)
T cd00913           1 GWELADD--GLKLERTFRFKNFVEALEFVNAVGEIAEAEGHHPDLSLGWGRV   50 (76)
T ss_pred             CCcCcCC--CCeEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEeccEE
Confidence            7999764  2489999999999999999999999999999   999999875

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).

>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=99.24  E-value=1.2e-11  Score=85.07  Aligned_cols=46  Identities=30%  Similarity=0.632  Sum_probs=42.2

Q ss_pred             CCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           96 GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        96 GW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      ||++.+ +  .+|+|+|+|++|.+|++|+|+||.+||++|   ||+++|++|
T Consensus         1 gW~~~~-~--~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~~~V   49 (75)
T cd00488           1 GWELAD-G--DALERTFKFKDFKEAIAFVNRVAELAEALNHHPDISNVYNKV   49 (75)
T ss_pred             CCcCCC-C--CcEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEeeeEE
Confidence            799876 2  389999999999999999999999999999   999999875

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc

>KOG4073 consensus Pterin carbinolamine dehydratase PCBD/dimerization cofactor of HNF1 [Transcription]

Probab=99.20  E-value=1.8e-11  Score=89.83  Aligned_cols=64  Identities=23%  Similarity=0.381  Sum_probs=53.0

Q ss_pred             CCCCCHHHHHhhCCCC--CCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           79 LRPMAEDSAKHLMPKV--VGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        79 ~~~Ls~~EI~~lL~~L--pGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      +..+...|-...+..+  .||.+.++  ..+|.|+|.|+||.+|++|+.+||..||.+|   +|++.||+|
T Consensus         5 ~~~~~~~er~~~ll~~~~agW~l~~~--rd~i~kef~fKdF~~a~~FmtrVal~Ae~~~HHPew~nvynkV   73 (104)
T KOG4073|consen    5 AHRLNESERKLKLLTLKAAGWDLVEG--RDAIFKEFRFKDFNQAFGFMTRVALRAEKLGHHPEWFNVYNKV   73 (104)
T ss_pred             hhhhhhhHHhccchhhhhcCCCcccC--ccceeeEEEeecHHHHHHHHHHHHHHHHHhcCCchhheeeeee
Confidence            5666666655544433  59999864  3599999999999999999999999999999   999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
2ebb_A	101	Pterin-4-alpha-carbinolamine dehydratase; coenzyme	9e-05

>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus} Length = 101

 Score = 38.4 bits (90), Expect = 9e-05
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 81  PMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG 135
            + E+  + L+ K  GW L +E  I    +  + + + +G+E  + +A ++E   
Sbjct: 2   RLTEEEVQALLEKADGWKLADERWI---VKKYRFQDYLQGIEFVRRIAAISENAN 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
3jst_A	97	Putative pterin-4-alpha-carbinolamine dehydratase;	99.75
1ru0_A	105	DCOH-like protein dcohm; alpha and beta structure,	99.75
2v6u_A	104	Pterin-4A-carbinolamine dehydratase; lyase, enzyme	99.74
3hxa_A	104	Pterin-4-alpha-carbinolamine dehydratase; alpha an	99.74
2ebb_A	101	Pterin-4-alpha-carbinolamine dehydratase; coenzyme	99.72
1usm_A	80	DCOH, hepatocyte nuclear factor 1-alpha; transcrip	99.48

>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0

Probab=99.75  E-value=1.1e-18  Score=125.10  Aligned_cols=64  Identities=19%  Similarity=0.309  Sum_probs=59.6

Q ss_pred             CCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           79 LRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        79 ~~~Ls~~EI~~lL~~LpGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      +++||++||+++|++||||++.++  ..+|+|+|+|+||.+|++|+|+||.+||++|   ||+++||+|
T Consensus         3 ~~~Ls~~ei~~~L~~l~gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~Va~~Ae~~~HHPdi~~~y~~V   69 (97)
T 3jst_A            3 RNRLTESEMNEALRALDGWQKVDG--REAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEWFNAYNRV   69 (97)
T ss_dssp             CSCCCHHHHHHHHHTSTTCEECTT--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEE
T ss_pred             CCCCCHHHHHHHhhcCCCCeEeCC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEeCCEE
Confidence            578999999999999999999853  3589999999999999999999999999999   999999975

>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1

Probab=99.75  E-value=7.3e-19  Score=127.68  Aligned_cols=69  Identities=19%  Similarity=0.372  Sum_probs=60.4

Q ss_pred             cCCCCCCCCCCHHHHHhhCCCC--CCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           73 PCDTKDLRPMAEDSAKHLMPKV--VGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        73 PC~g~~~~~Ls~~EI~~lL~~L--pGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      .|++ ++++||++||+++|++|  |||++.++  ..+|+|+|+|+||.+|++|||+||.+||++|   ||+++||+|
T Consensus         2 ~~~~-~~~~Ls~~ei~~~L~~l~~~gW~~~~~--~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~~V   75 (105)
T 1ru0_A            2 SMSS-DAQWLTAEERDQLIPGLKAAGWSELSE--RDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNVYNKV   75 (105)
T ss_dssp             -----CCSBCCHHHHHHHHHHHHHTTCEECSS--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEE
T ss_pred             CCCC-CCCCCCHHHHHHHHHhCCCCCCeEECC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCCEE
Confidence            4675 78999999999999999  89999753  2489999999999999999999999999999   999999975

>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*

Probab=99.74  E-value=2.6e-18  Score=124.58  Aligned_cols=65  Identities=18%  Similarity=0.270  Sum_probs=60.0

Q ss_pred             CCCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           78 DLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        78 ~~~~Ls~~EI~~lL~~LpGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      ..++||++||+++|++||||++.++  +.+|+|+|+|+||.+|++|||+||.+||++|   ||+++||+|
T Consensus         5 ~~~~Ls~~ei~~~L~~l~gW~~~~~--~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~~V   72 (104)
T 2v6u_A            5 ARLAANSARLLQLHKTVPQWHLTDG--HLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWYNVYNTV   72 (104)
T ss_dssp             CCCCTTCHHHHHHHTTSTTSEECGG--GCCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEE
T ss_pred             cCCCCCHHHHHHHhhcCCCCeEeCC--cCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCCEE
Confidence            3578999999999999999999863  3589999999999999999999999999999   999999975

>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A

Probab=99.74  E-value=1.9e-18  Score=125.35  Aligned_cols=65  Identities=18%  Similarity=0.405  Sum_probs=59.7

Q ss_pred             CCCCCCHHHHHhhCCCC--CCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           78 DLRPMAEDSAKHLMPKV--VGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        78 ~~~~Ls~~EI~~lL~~L--pGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      ++++||++||+++|++|  |||++.+++  .+|+|+|+|+||.+|++|||+||.+||++|   ||+++||+|
T Consensus         4 ~~~~Ls~~ei~~~L~~L~~~gW~~~~~~--~~l~r~f~F~~f~~a~~F~~~Va~~AE~~~HHPdi~~~y~~V   73 (104)
T 3hxa_A            4 KAHRLSAEERDQLLPNLRAVGWNELEGR--DAIFKQFHFKDFNRAFGFMSRVALQAEKLDHHPEWFNVYNKV   73 (104)
T ss_dssp             -CCCCCHHHHHHHSHHHHTTTCEECSSS--SCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEE
T ss_pred             CCccCCHHHHHHHHhhCCCCCCEEecCC--CeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEeCCEE
Confidence            68999999999999999  899997532  489999999999999999999999999999   999999975

>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}

Probab=99.72  E-value=5.7e-18  Score=122.29  Aligned_cols=62  Identities=16%  Similarity=0.442  Sum_probs=57.7

Q ss_pred             CCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           80 RPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        80 ~~Ls~~EI~~lL~~LpGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      .+||++||+++|++||||++.+  |. +|+|+|+|+||.+|++|||+||.+||++|   ||+++||+|
T Consensus         1 ~~Ls~~ei~~~L~~l~gW~~~~--~~-~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~~V   65 (101)
T 2ebb_A            1 MRLTEEEVQALLEKADGWKLAD--ER-WIVKKYRFQDYLQGIEFVRRIAAISENANHHPFISIDYKLI   65 (101)
T ss_dssp             CCCCHHHHHHHHHTSTTCEEET--TT-EEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCEEEEETTEE
T ss_pred             CCCCHHHHHHHhhcCCCCeECC--CC-CEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCCEE
Confidence            3799999999999999999986  32 69999999999999999999999999999   999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1ru0a_	100	DcoH-like protein DCoH2 {Mouse (Mus musculus) [Tax	99.65
d1dcpa_	99	Pterin-4a-carbinolamine dehydratase (PCD)/dimeriza	99.63
d1usma_	80	Pterin-4a-carbinolamine dehydratase (PCD)/dimeriza	99.23

>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: PCD-like
family: PCD-like
domain: DcoH-like protein DCoH2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=4e-17  Score=115.51  Aligned_cols=65  Identities=20%  Similarity=0.387  Sum_probs=59.3

Q ss_pred             CCCCCCHHHHHhhCCCC--CCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           78 DLRPMAEDSAKHLMPKV--VGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        78 ~~~~Ls~~EI~~lL~~L--pGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      ++++||++||+++|++|  +||++.++  ..+|+|+|+|+||.+|++|+|+||.+||++|   ||++.|++|
T Consensus         1 da~~Lt~~ei~~~L~~L~~~gW~~~~~--~~~L~r~f~f~~f~~a~~F~~~va~~ae~~~HHPdi~~~y~~V   70 (100)
T d1ru0a_           1 DAQWLTAEERDQLIPGLKAAGWSELSE--RDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNVYNKV   70 (100)
T ss_dssp             CCSBCCHHHHHHHHHHHHHTTCEECSS--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEE
T ss_pred             CcccCCHHHHHHHHhhCCCCCCEEECC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEeccEE
Confidence            46899999999999988  79999753  3589999999999999999999999999999   999999975

>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: PCD-like
family: PCD-like
domain: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=6.3e-17  Score=114.30  Aligned_cols=62  Identities=19%  Similarity=0.422  Sum_probs=57.4

Q ss_pred             CCCHHHHHhhCCCCC--CCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274           81 PMAEDSAKHLMPKVV--GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL  144 (144)
Q Consensus        81 ~Ls~~EI~~lL~~Lp--GW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l  144 (144)
                      +||++||+++|++|+  ||++.+  |..+|+|+|+|+||.+|++|+|+||.+||++|   ||++.|++|
T Consensus         2 ~Ls~ee~~~~l~~L~~~GW~~~~--~~~~L~r~f~F~~f~~a~~Fv~~Va~~ae~~~HHP~i~~~y~~V   68 (99)
T d1dcpa_           2 RLSAEERDQLLPNLRAVGWNELE--GRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKV   68 (99)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEECT--TSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEE
T ss_pred             CCCHHHHHHHHHhCCCCCCEEEc--CCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCccEEEeeeEE
Confidence            799999999999997  999975  33589999999999999999999999999999   999999975