Citrus Sinensis ID: 032278

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MKRLFDALTFLVYGRKQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccEEEEEEcccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHHHcccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccccEEEEEEccccccEEEEEHHHHHHHHHHHccccHHHHHHcccccccHHccccHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHEHHHHccccccccccccccHHHHHHHHHHHHccccEEEEEEccc
Coil and Loop (DISEMBL)
MKRLFDALTFLVYGRKQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIfkengvngeylegmsmFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLkgeqkvrrpwwapsclSVVFVKVAKRNRQSRVVSLKLEP
Flexible Loop (DISEMBL)
MKRLFDALTFLVYGRKQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLkgeqkvrrpwwapscLSVVFvkvakrnrqsrvvslklep
Low Complexity Region (SEG)
MKRLFDALTFLVYGRKQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP
Disordered region (IsUnstruct)
***LFDALTFLVYGRKQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAK**************
Disordered Region (DISOPRED)
**RLFDALTFLVYGRKQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKL**
Disordered Region (DISEMBL)
MKRLFDALTFLVYGRKQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRN************
Disordered Region (DISPRO)
*KRLFDALTFLVYGRKQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKRLFDALTFLVYGRKQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
P18160	2410	Dual specificity protein	yes	no	0.222	0.013	0.468	0.0007

>sp|P18160|SPLA_DICDI Dual specificity protein kinase splA OS=Dictyostelium discoideum GN=splA PE=1 SV=3

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 38   DVGLWLEEINLGGYRQIFKENGVNGEYLEGMS 69
            DV +WLE  N G YR+ F++N ++G +LEG++
Sbjct: 1738 DVAIWLESFNYGQYRKNFRDNNISGRHLEGIT 1769

Essential for spore differentiation.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: 0EC: .EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
449444486	125	PREDICTED: uncharacterized protein LOC10	0.812	0.936	0.905	1e-55
194239472	125	downward leaf curling protein [Cucumis m	0.812	0.936	0.897	3e-55
225447590	125	PREDICTED: uncharacterized protein LOC10	0.812	0.936	0.897	9e-55
224131826	125	predicted protein [Populus trichocarpa]	0.812	0.936	0.871	6e-54
351724953	125	uncharacterized protein LOC100499990 [Gl	0.812	0.936	0.871	1e-53
218186951	162	hypothetical protein OsI_38513 [Oryza sa	0.812	0.722	0.854	3e-53
115488792	125	Os12g0514600 [Oryza sativa Japonica Grou	0.812	0.936	0.854	3e-53
351725355	125	uncharacterized protein LOC100527863 [Gl	0.812	0.936	0.863	4e-53
217075492	125	unknown [Medicago truncatula]	0.812	0.936	0.863	8e-53
226510052	137	uncharacterized protein LOC100276203 [Ze	0.812	0.854	0.829	2e-52

>gi|449444486|ref|XP_004140005.1| PREDICTED: uncharacterized protein LOC101220276 isoform 2 [Cucumis sativus] gi|449444488|ref|XP_004140006.1| PREDICTED: uncharacterized protein LOC101220276 isoform 3 [Cucumis sativus] gi|449475624|ref|XP_004154504.1| PREDICTED: uncharacterized protein LOC101230995 isoform 2 [Cucumis sativus] gi|449475628|ref|XP_004154505.1| PREDICTED: uncharacterized protein LOC101230995 isoform 3 [Cucumis sativus]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/117 (90%), Positives = 111/117 (94%)

Query: 28  PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 87
           P    + + +DVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW
Sbjct: 9   PLDFFIWTVEDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 68

Query: 88  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP 144
           GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLS+VF+KVAKRNRQSRVVSLKLEP
Sbjct: 69  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKRNRQSRVVSLKLEP 125

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194239472|dbj|BAG55245.1| downward leaf curling protein [Cucumis melo]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/117 (89%), Positives = 110/117 (94%)

Query: 28  PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 87
           P    + + +DVGLWLEEINLGGYRQ FKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW
Sbjct: 9   PLDFFIWTVEDVGLWLEEINLGGYRQTFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 68

Query: 88  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP 144
           GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLS+VF+KVAKRNRQSRVVSLKLEP
Sbjct: 69  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKRNRQSRVVSLKLEP 125

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447590|ref|XP_002272109.1| PREDICTED: uncharacterized protein LOC100244267 isoform 1 [Vitis vinifera] gi|296085001|emb|CBI28416.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 105/117 (89%), Positives = 109/117 (93%)

Query: 28  PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 87
           P    + + +DVGLWLE INLG YRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW
Sbjct: 9   PLDFFIWTVEDVGLWLEGINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 68

Query: 88  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP 144
           GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLS+VFVKVAKRNRQSRVVSLKLEP
Sbjct: 69  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSIVFVKVAKRNRQSRVVSLKLEP 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131826|ref|XP_002321188.1| predicted protein [Populus trichocarpa] gi|222861961|gb|EEE99503.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (546), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 102/117 (87%), Positives = 107/117 (91%)

Query: 28  PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 87
           P    + + +DVGLWLEEINLG YRQIFK+NGVNGEYLEGMSMFTTEQILRFIRRCHMKW
Sbjct: 9   PLDFFIWTVEDVGLWLEEINLGSYRQIFKDNGVNGEYLEGMSMFTTEQILRFIRRCHMKW 68

Query: 88  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP 144
           GDFITLCKELRRIKVACLKGEQKVRRPWW PSCLS +FVKVAK NRQSRVVSLKLEP
Sbjct: 69  GDFITLCKELRRIKVACLKGEQKVRRPWWVPSCLSAIFVKVAKHNRQSRVVSLKLEP 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724953|ref|NP_001235284.1| uncharacterized protein LOC100499990 [Glycine max] gi|357495313|ref|XP_003617945.1| Downward leaf curling protein [Medicago truncatula] gi|255628361|gb|ACU14525.1| unknown [Glycine max] gi|355519280|gb|AET00904.1| Downward leaf curling protein [Medicago truncatula] gi|388507138|gb|AFK41635.1| unknown [Medicago truncatula]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/117 (87%), Positives = 107/117 (91%)

Query: 28  PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 87
           P    + + +DVGLWLE INLG YRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW
Sbjct: 9   PLDFFIWTVEDVGLWLETINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 68

Query: 88  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP 144
           GDFITLCKELRRIKVACLKGEQKVRRPWWAP+CLS VF+KVAK NRQSRVVSLKLEP
Sbjct: 69  GDFITLCKELRRIKVACLKGEQKVRRPWWAPACLSTVFLKVAKSNRQSRVVSLKLEP 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218186951|gb|EEC69378.1| hypothetical protein OsI_38513 [Oryza sativa Indica Group]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/117 (85%), Positives = 108/117 (92%)

Query: 28  PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 87
           P    + + +DVGLWLEEINLG YRQ+F+ENGVNGEYLE +SMFTTEQILRFIRRCHMKW
Sbjct: 46  PLDFFIWTVEDVGLWLEEINLGSYRQVFEENGVNGEYLESLSMFTTEQILRFIRRCHMKW 105

Query: 88  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP 144
           GDFITLCKELRRIKVACLKGEQ+VRRPWWAPSCLSVVFV+ AKRNRQSRVVSLKLEP
Sbjct: 106 GDFITLCKELRRIKVACLKGEQEVRRPWWAPSCLSVVFVRAAKRNRQSRVVSLKLEP 162

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115488792|ref|NP_001066883.1| Os12g0514600 [Oryza sativa Japonica Group] gi|108862741|gb|ABG22031.1| expressed protein [Oryza sativa Japonica Group] gi|113649390|dbj|BAF29902.1| Os12g0514600 [Oryza sativa Japonica Group] gi|215707153|dbj|BAG93613.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/117 (85%), Positives = 108/117 (92%)

Query: 28  PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 87
           P    + + +DVGLWLEEINLG YRQ+F+ENGVNGEYLE +SMFTTEQILRFIRRCHMKW
Sbjct: 9   PLDFFIWTVEDVGLWLEEINLGSYRQVFEENGVNGEYLESLSMFTTEQILRFIRRCHMKW 68

Query: 88  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP 144
           GDFITLCKELRRIKVACLKGEQ+VRRPWWAPSCLSVVFV+ AKRNRQSRVVSLKLEP
Sbjct: 69  GDFITLCKELRRIKVACLKGEQEVRRPWWAPSCLSVVFVRAAKRNRQSRVVSLKLEP 125

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725355|ref|NP_001238625.1| uncharacterized protein LOC100527863 [Glycine max] gi|255633398|gb|ACU17056.1| unknown [Glycine max]

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 101/117 (86%), Positives = 106/117 (90%)

Query: 28  PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 87
           P    + + +DVGLWLE INLG Y QIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW
Sbjct: 9   PLDFFIWTVEDVGLWLETINLGSYSQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 68

Query: 88  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP 144
           GDFITLCKELRRIKVACLKGEQKVRRPWWAP+CLS VF+KVAK NRQSRVVSLKLEP
Sbjct: 69  GDFITLCKELRRIKVACLKGEQKVRRPWWAPACLSTVFLKVAKSNRQSRVVSLKLEP 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075492|gb|ACJ86106.1| unknown [Medicago truncatula]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 101/117 (86%), Positives = 106/117 (90%)

Query: 28  PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 87
           P    + + +DVGLWLE INLG YRQIFKENGVNGEYLEGMSM TTEQILRFIRRCHMKW
Sbjct: 9   PLDFFIWTVEDVGLWLETINLGSYRQIFKENGVNGEYLEGMSMSTTEQILRFIRRCHMKW 68

Query: 88  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP 144
           GDFITLCKELRRIKVACLKGEQKVRRPWWAP+CLS VF+KVAK NRQSRVVSLKLEP
Sbjct: 69  GDFITLCKELRRIKVACLKGEQKVRRPWWAPACLSTVFLKVAKSNRQSRVVSLKLEP 125

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226510052|ref|NP_001143520.1| uncharacterized protein LOC100276203 [Zea mays] gi|195621834|gb|ACG32747.1| hypothetical protein [Zea mays] gi|414878235|tpg|DAA55366.1| TPA: hypothetical protein ZEAMMB73_523630 [Zea mays]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/117 (82%), Positives = 109/117 (93%)

Query: 28  PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 87
           P    + + +DVGLWLEEINLGGYRQ+F+ENGVNGEYLE +SMFTTEQILRFIRRCHMKW
Sbjct: 21  PLDFFIWTVEDVGLWLEEINLGGYRQVFEENGVNGEYLESLSMFTTEQILRFIRRCHMKW 80

Query: 88  GDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLEP 144
           GDFITLCKELRRIKVACLKGEQ+VRRPWWAP+CLS+VFV+ AK+NR+SRVVSLKLEP
Sbjct: 81  GDFITLCKELRRIKVACLKGEQEVRRPWWAPACLSIVFVRAAKQNRKSRVVSLKLEP 137

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2077347	125	AT3G07760 "AT3G07760" [Arabido	0.743	0.856	0.925	1.1e-50

TAIR|locus:2077347 AT3G07760 "AT3G07760" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 99/107 (92%), Positives = 102/107 (95%)

Query:    37 QDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKE 96
             +DVG WLEEINLGGYRQIFKENGVNGEYLE MS+FTTEQIL FIRR HMKWGDFITLCKE
Sbjct:    18 EDVGSWLEEINLGGYRQIFKENGVNGEYLESMSVFTTEQILHFIRRHHMKWGDFITLCKE 77

Query:    97 LRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVSLKLE 143
             LRRIKVACLKGEQ+VRRPWWAPSCLSVVFVK AKRNRQSRVVSLKLE
Sbjct:    78 LRRIKVACLKGEQRVRRPWWAPSCLSVVFVKAAKRNRQSRVVSLKLE 124


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.140   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       144   0.00091  102 3  11 22  0.37    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  150 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.61u 0.10s 12.71t   Elapsed:  00:00:01
  Total cpu time:  12.61u 0.10s 12.71t   Elapsed:  00:00:01
  Start:  Sat May 11 00:01:15 2013   End:  Sat May 11 00:01:16 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
cd09506	66	cd09506, SAM_Shank1,2,3, SAM domain of Shank1,2,3	4e-05
cd09534	62	cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fun	4e-04
cd09546	66	cd09546, SAM_EPH-A5, SAM domain of EPH-A5 subfamil	7e-04
smart00454	68	smart00454, SAM, Sterile alpha motif	0.002
cd09487	56	cd09487, SAM_superfamily, SAM (Sterile alpha motif	0.003
cd09505	72	cd09505, SAM_WDSUB1, SAM domain of WDSUB1 proteins	0.003
pfam07647	66	pfam07647, SAM_2, SAM domain (Sterile alpha motif)	0.004
cd09507	65	cd09507, SAM_DGK-delta-eta, SAM domain of diacylgl	0.004

>gnl|CDD|188905 cd09506, SAM_Shank1,2,3, SAM domain of Shank1,2,3 family proteins

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYL 65
          +  DVG WLE +NLG +R+ F +N ++G +L
Sbjct: 6  TVDDVGDWLESLNLGEHRERFMDNEIDGSHL 36

SAM (sterile alpha motif) domain of Shank1,2,3 family proteins is a protein-protein interaction domain. Shank1,2,3 proteins are scaffold proteins that are known to interact with a variety of cytoplasmic and membrane proteins. SAM domains of the Shank1,2,3 family are prone to homooligomerization. They are highly enriched in the postsynaptic density, acting as scaffolds to organize assembly of postsynaptic proteins. SAM domains of Shank3 proteins can form large sheets of helical fibers. Shank genes show distinct patterns of expression, in rat Shank1 mRNA is found almost exclusively in brain, Shank2 in brain, kidney and liver, and Shank3 in heart, brain and spleen. Length = 66

>gnl|CDD|188933 cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fungal subfamily

 Score = 36.0 bits (84), Expect = 4e-04
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 37 QDVGLWLEEINLGGYRQIFKENGVNGEYL 65
          + V  WL E+N G Y  IF++N + G+ L
Sbjct: 4  EFVEEWLNELNCGQYLDIFEKNLITGDLL 32

SAM (sterile alpha motif) domain of Ste11 subfamily is a protein-protein interaction domain. Proteins of this subfamily have SAM domain at the N-terminus and protein kinase domain at the C-terminus. They participate in regulation of mating pheromone response, invasive growth and high osmolarity growth response. MAP triple kinase Ste11 from S.cerevisia is known to interact with Ste20 kinase and Ste50 regulator. These kinases are able to form homodimers interacting through their SAM domains as well as heterodimers or heterogenous complexes when either SAM domain of monomeric or homodimeric form of Ste11 interacts with Ste50 regulator. Length = 62

>gnl|CDD|188945 cd09546, SAM_EPH-A5, SAM domain of EPH-A5 subfamily of tyrosine kinase receptors

 Score = 35.7 bits (82), Expect = 7e-04
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRF 79
          +++ VG WLE I +G Y +IF ENG +   ++ ++  T E + R 
Sbjct: 2  AYRSVGEWLEAIKMGRYTEIFMENGYSS--MDAVAQVTLEDLRRL 44

SAM (sterile alpha motif) domain of EPH-A5 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A5 receptors and appears to mediate cell-cell initiated signal transduction. Eph-A5 gene is almost exclusively expressed in the nervous system. Murine EPH-A5 receptors participate in axon guidance during embryogenesis and play a role in the adult synaptic plasticity, particularly in neuron-target interactions in multiple neural circuits. Additionally EPH-A5 receptors and its ligand ephrin A5 regulate dopaminergic axon outgrowth and influence the formation of the midbrain dopaminergic pathways. EphA5 gene expression was found decreased in a few different breast cancer cell lines, thus it might be a potential molecular marker for breast cancer carcinogenesis and progression. Length = 66

>gnl|CDD|197735 smart00454, SAM, Sterile alpha motif

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 35  SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLC 94
           S + V  WLE I L  Y   F++NG++G  L  ++     + L   +  H K      + 
Sbjct: 5   SPESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRK-----KIL 59

Query: 95  KELRRIK 101
           K ++++K
Sbjct: 60  KAIQKLK 66

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation. Length = 68

>gnl|CDD|188886 cd09487, SAM_superfamily, SAM (Sterile alpha motif )

 Score = 33.8 bits (78), Expect = 0.003
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 38 DVGLWLEEINLGGYRQIFKENGVNGEYLEGMSM 70
          DV  WLE + L  Y  +F++N ++G+ L  ++ 
Sbjct: 1  DVAEWLESLGLEQYADLFRKNEIDGDALLLLTD 33

SAM (Sterile Alpha Motif) domain is a module consisting of approximately 70 amino acids. This domain is found in the Fungi/Metazoa group and in a restricted number of bacteria. Proteins with SAM domains are represented by a wide variety of domain architectures and have different intracellular localization, including nucleus, cytoplasm and membranes. SAM domains have diverse functions. They can interact with proteins, RNAs and membrane lipids, contain site of phosphorylation and/or kinase docking site, and play a role in protein homo and hetero dimerization/oligomerization in processes ranging from signal transduction to regulation of transcription. Mutations in SAM domains have been linked to several diseases. Length = 56

>gnl|CDD|188904 cd09505, SAM_WDSUB1, SAM domain of WDSUB1 proteins

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
          S +DV  WL  I L  Y ++F+ N ++G+ L  +   T E + +
Sbjct: 6  SEEDVCTWLRSIGLEQYVEVFRANNIDGKELLNL---TKESLSK 46

SAM (sterile alpha motif) domain of WDSUB1 subfamily proteins is a putative protein-protein interaction domain. Proteins of this group contain multiple domains: SAM, one or more WD40 repeats and U-box (derived version of the RING-finger domain). Apparently the WDSUB1 subfamily proteins participate in protein degradation through ubiquitination, since U-box domain are known as a member of E3 ubiquitin ligase family, while SAM and WD40 domains most probably are responsible for an E2 ubiquitin-conjugating enzyme binding and a target protein binding. Length = 72

>gnl|CDD|203706 pfam07647, SAM_2, SAM domain (Sterile alpha motif)

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEY-LEGMSM 70
          S +DV  WL  I L  Y   F++ G+ G   L  ++ 
Sbjct: 5  SPEDVAEWLRSIGLPQYADNFRDQGITGGELLLRLTE 41

Length = 66

>gnl|CDD|188906 cd09507, SAM_DGK-delta-eta, SAM domain of diacylglycerol kinase delta and eta subunits

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 30 ALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYL 65
           +T  + ++VG WLE + LG YR IF  N + G  L
Sbjct: 1  PVTNWTTEEVGAWLESLQLGEYRDIFARNDIRGSEL 36

SAM (sterile alpha motif) domain of DGK-eta-delta subfamily proteins is a protein-protein interaction domain. Proteins of this subfamily are multidomain diacylglycerol kinases with a SAM domain located at the C-terminus. DGK proteins participate in signal transduction. They regulate the level of second messengers such as diacylglycerol and phosphatidic acid. The SAM domain of DGK proteins can form high molecular weight homooligomers through head-to-tail interactions as well as heterooligomers between the SAM domains of DGK delta and eta proteins. The oligomerization plays a role in the regulation of DGK intracellular localization. Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
PF00536	64	SAM_1: SAM domain (Sterile alpha motif); InterPro:	99.58
PF07647	66	SAM_2: SAM domain (Sterile alpha motif); InterPro:	99.53
smart00454	68	SAM Sterile alpha motif. Widespread domain in sign	99.49
cd00166	63	SAM Sterile alpha motif.; Widespread domain in sig	99.48
KOG4375	272	consensus Scaffold protein Shank and related SAM d	98.39
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.33
KOG1170	1099	consensus Diacylglycerol kinase [Lipid transport a	97.97
PF02198	84	SAM_PNT: Sterile alpha motif (SAM)/Pointed domain;	97.42
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	97.04
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	97.02
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	96.88
cd08757	68	SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed doma	96.85
smart00251	82	SAM_PNT SAM / Pointed domain. A subfamily of the S	96.6
cd08532	76	SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointe	96.54
PF09235	75	Ste50p-SAM: Ste50p, sterile alpha motif; InterPro:	96.36
cd08203	66	SAM_PNT Sterile alpha motif (SAM)/Pointed domain.	96.01
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	95.88
cd08534	89	SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Point	95.06
KOG4384	361	consensus Uncharacterized SAM domain protein [Gene	94.92
cd08540	75	SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed doma	94.87
cd08538	78	SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Point	94.33
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	94.28
cd08533	71	SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed	94.18
cd08542	88	SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed do	93.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	93.7
cd08536	66	SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed doma	93.59
cd08541	91	SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed do	93.23
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	93.16
cd08543	89	SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed do	93.13
cd08535	68	SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed	92.72
KOG1738	638	consensus Membrane-associated guanylate kinase-int	92.53
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	92.19
KOG4374	216	consensus RNA-binding protein Bicaudal-C [RNA proc	91.76
cd08531	75	SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointe	91.67
KOG0288	459	consensus WD40 repeat protein TipD [General functi	90.99
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	90.33
PF10281	38	Ish1: Putative stress-responsive nuclear envelope	89.15
KOG0293	519	consensus WD40 repeat-containing protein [Function	89.09
KOG0249	916	consensus LAR-interacting protein and related prot	88.16
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	87.3
KOG0269	839	consensus WD40 repeat-containing protein [Function	87.02
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	86.29
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	84.5
KOG0283	712	consensus WD40 repeat-containing protein [Function	84.45
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	84.41
PF12979	351	DUF3863: Domain of Unknown Function with PDB struc	83.88
KOG0315	311	consensus G-protein beta subunit-like protein (con	83.81
KOG0263	707	consensus Transcription initiation factor TFIID, s	83.62
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	81.56
KOG1063	764	consensus RNA polymerase II elongator complex, sub	80.52

>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=99.58  E-value=4.5e-15  Score=95.38  Aligned_cols=64  Identities=27%  Similarity=0.463  Sum_probs=56.1

Q ss_pred             cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      ++|++++|++||+++||++|.+.|++|.|+|+.|.+||    ++-|.-++.  .+.||+.++...|+++|
T Consensus         1 s~W~~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt----~~dL~~lgi--~~~ghr~ki~~~i~~Lk   64 (64)
T PF00536_consen    1 SEWSVEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLT----EEDLEELGI--TKLGHRKKILRAIQKLK   64 (64)
T ss_dssp             GGTSHHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSC----HHHHHHTT---SSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcC----HHHHHHcCC--CCHHHHHHHHHHHHHhC
Confidence            47999999999999999999999999999999999994    343544665  77899999999999987

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....

>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=99.53  E-value=1.7e-14  Score=92.91  Aligned_cols=65  Identities=31%  Similarity=0.500  Sum_probs=56.9

Q ss_pred             ccCCChhHHHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           31 LTLLSFQDVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        31 ~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      +..||.+||+.||+.+||++|.+.|++|+|+| +.|..|    +++-|.-|+.  .+.||+.+++++++.+|
T Consensus         1 v~~w~~~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l----~~~~L~~lGI--~~~~~r~kll~~i~~Lk   66 (66)
T PF07647_consen    1 VSTWSPEDVAEWLKSLGLEQYADNFRENGIDGLEDLLQL----TEEDLKELGI--TNLGHRRKLLSAIQELK   66 (66)
T ss_dssp             GGGHCHHHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTS----CHHHHHHTTT--THHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhC----CHHHHHHcCC--CCHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999 999888    4444555554  78999999999999887

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....

>smart00454 SAM Sterile alpha motif

Probab=99.49  E-value=5.5e-14  Score=87.68  Aligned_cols=66  Identities=29%  Similarity=0.486  Sum_probs=57.8

Q ss_pred             ccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           31 LTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        31 ~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      +..|++++|++||+.+||++|.+.|++|+|+|..|.+++   +++.+.-++.  .+-||+..++..++.+|
T Consensus         1 ~~~w~~~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~---~~~~l~~lgi--~~~~~r~~ll~~i~~l~   66 (68)
T smart00454        1 VSQWSPESVADWLESIGLEQYADNFRKNGIDGALLLLLT---SEEDLKELGI--TKLGHRKKILKAIQKLK   66 (68)
T ss_pred             CCCCCHHHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcC---hHHHHHHcCC--CcHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999996   4555666665  68899999999998876

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.

>cd00166 SAM Sterile alpha motif

Probab=99.48  E-value=5.3e-14  Score=87.51  Aligned_cols=63  Identities=32%  Similarity=0.514  Sum_probs=54.7

Q ss_pred             CCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           33 LLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        33 ~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      .|+.++|++||+++|+++|.+.|++|+|+|..|.+|+    ++-|+.++.  ...||+.+++.+++.+|
T Consensus         1 ~w~~~~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~----~~dL~~lgi--~~~g~r~~i~~~i~~l~   63 (63)
T cd00166           1 NWSPEDVAEWLESLGLGQYADNFRENGIDGDLLLLLT----EEDLKELGI--TLPGHRKKILKAIQKLK   63 (63)
T ss_pred             CCCHHHHHHHHHHcChHHHHHHHHHcCCCHHHHhHCC----HHHHHHcCC--CCHHHHHHHHHHHHHcC
Confidence            5999999999999999999999999999999999984    444556665  55699999999998764

; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.

>KOG4375 consensus Scaffold protein Shank and related SAM domain proteins [Signal transduction mechanisms]

Probab=98.39  E-value=1.1e-07  Score=81.22  Aligned_cols=47  Identities=23%  Similarity=0.352  Sum_probs=42.3

Q ss_pred             ccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHH
Q 032278           29 HALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQ   75 (144)
Q Consensus        29 l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~   75 (144)
                      ..+.-||..||++||+.++|.+|++.|.+|.|||+.|.+|+|..--+
T Consensus       205 Kpl~~Wsk~DV~dWLssl~L~E~~~aF~d~eIdG~hLp~l~k~df~~  251 (272)
T KOG4375|consen  205 KPLQRWSKIDVNDWLSSLHLIEYDDAFHDIEIDGKHLPLLRKLDFRG  251 (272)
T ss_pred             cccceeccccHHHHHHhhhhhhcchhhhhcccccchhhhcchhhhhc
Confidence            35688999999999999999999999999999999999998865433

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.33  E-value=5.2e-07  Score=84.26  Aligned_cols=69  Identities=23%  Similarity=0.362  Sum_probs=56.6

Q ss_pred             cccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccc-hHHHHHHHHHHHHHHH
Q 032278           30 ALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWG-DFITLCKELRRIKVAC  104 (144)
Q Consensus        30 ~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~g-d~itl~~el~~~kv~~  104 (144)
                      .+-.|++-||.-|+..|||+.|.+.|.++.+||.-|++||.....   +++   -|+-| ++=.|+.||+.+|||.
T Consensus       461 qVPgWt~AdVQ~WvkkIGFeeY~EkFakQ~VDGDLLLqLTEndLk---~Dv---GM~SGl~RKRFlRELqtLKv~A  530 (832)
T KOG3678|consen  461 QVPGWTCADVQYWVKKIGFEEYVEKFAKQMVDGDLLLQLTENDLK---HDV---GMISGLHRKRFLRELQTLKVAA  530 (832)
T ss_pred             cCCCcchHHHHHHHHHhCHHHHHHHHHHHhccchHHHhhhhhhhh---hhh---hhhhhhhHHHHHHHHHHHHHhh
Confidence            567899999999999999999999999999999999999644332   222   24444 4557999999999985

>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]

Probab=97.97  E-value=4.3e-06  Score=80.88  Aligned_cols=62  Identities=24%  Similarity=0.427  Sum_probs=51.7

Q ss_pred             cccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHH---HHHH
Q 032278           30 ALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITL---CKEL   97 (144)
Q Consensus        30 ~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl---~~el   97 (144)
                      ...+|+.|+|++||+.+||.+|...|+.|.|.|.+|++|-.-..    .+++.  ||.||+-.+   |+||
T Consensus       994 ~~~~w~seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDL----kdlgv--tkVGhvkril~aIkdl 1058 (1099)
T KOG1170|consen  994 NIPYWTSEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDL----KDLGV--TKVGHVKRILSAIKDL 1058 (1099)
T ss_pred             cCccccHHHHHHHHhccccchhhhhhhccCcccceeeecCcccc----cccch--hhhHHHHHHHHHHHHH
Confidence            66899999999999999999999999999999999999965443    34444  899987544   5666

>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=97.42  E-value=0.00014  Score=50.65  Aligned_cols=68  Identities=31%  Similarity=0.493  Sum_probs=46.1

Q ss_pred             CcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           27 MPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        27 ~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      .+.+-..||.+||..||.    +.+++.  --|..=+|||+.|-.||++      .|+++.-...||.  |-..|+.||-
T Consensus        13 ~p~DP~~Wt~~~V~~Wl~w~~~~f~l~~--~~~~~f~~~G~~Lc~lt~e------~F~~~~~~~~G~~--Ly~~L~~Lk~   82 (84)
T PF02198_consen   13 LPKDPRLWTKEDVLQWLRWVVREFDLPA--IDFSRFNMNGRELCSLTKE------DFRRRFPSGYGDI--LYSHLQLLKK   82 (84)
T ss_dssp             SCSSGGG--HHHHHHHHHHHHHHTT-SS--CHGGGGTS-HHHHHHSHHH------HHHHHSTHTTHHH--HHHHHHHHHH
T ss_pred             CCCChhhCCHHHHHHHHHHHHHhcCCCc--CchhccCCCHHHHHHcCHH------HHHHHcCCCcHHH--HHHHHHHHHH
Confidence            366778999999999995    334443  2355559999999999654      4777766678885  5677888876


Q ss_pred             HH
Q 032278          103 AC  104 (144)
Q Consensus       103 ~~  104 (144)
                      +|
T Consensus        83 ~~   84 (84)
T PF02198_consen   83 CC   84 (84)
T ss_dssp             H-
T ss_pred             cc
Confidence            65

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=97.04  E-value=0.00073  Score=64.59  Aligned_cols=41  Identities=32%  Similarity=0.506  Sum_probs=37.1

Q ss_pred             ccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCccc
Q 032278           31 LTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMF   71 (144)
Q Consensus        31 ~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~   71 (144)
                      ...|.+--|-.||.+|||+||.+.|-+|-|||+-|..||-.
T Consensus       620 a~klDv~wvlRWLDDIGLPQYKdqF~E~rVDgrmL~ylTvn  660 (861)
T KOG1899|consen  620 ANKLDVHWVLRWLDDIGLPQYKDQFAENRVDGRMLHYLTVN  660 (861)
T ss_pred             ccchhHHHHHHHHHhcCChhhHHHHhhhccchhhHhhhhHh
Confidence            46788888999999999999999999999999999999643

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=97.02  E-value=0.00036  Score=66.65  Aligned_cols=52  Identities=27%  Similarity=0.280  Sum_probs=44.9

Q ss_pred             CCcccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHH
Q 032278           26 DMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQIL   77 (144)
Q Consensus        26 ~~~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il   77 (144)
                      +++..|.+|+.|.||+||.++||+||..--+.---.|+-|++.|.-..|--|
T Consensus       542 d~~~pfa~W~~EqvcnWlae~Gl~qY~n~~r~wv~Sg~tfltaS~qd~EkeL  593 (861)
T KOG1899|consen  542 DPPLPFADWRSEQVCNWLAEIGLGQYMNEVRRWVRSGRTFLTASPQDYEKEL  593 (861)
T ss_pred             CCCCchhhccHHHHHHHHHHhchHHHHHHHHHHHhcCchhhcCCHHHHHHHh
Confidence            4577799999999999999999999999988888899999988876666443

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=96.88  E-value=0.00068  Score=62.60  Aligned_cols=46  Identities=20%  Similarity=0.371  Sum_probs=39.7

Q ss_pred             ccccCCChhHHHHHHHh-cCcchHHHHhhHcCcChhhhccCcccchH
Q 032278           29 HALTLLSFQDVGLWLEE-INLGGYRQIFKENGVNGEYLEGMSMFTTE   74 (144)
Q Consensus        29 l~~~~WS~EDVa~WLee-iGL~qYre~Fk~NnIdG~eLi~Ltk~T~e   74 (144)
                      --+-+||.|++-.||-+ ..|+||++.|+.|+|+|..|+.|..-.++
T Consensus       130 Sev~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlAv~n~~  176 (575)
T KOG4403|consen  130 SEVHNWTNERTVQWLINDVELPQYVEAFKAKKVDGKALPRLAVPNSD  176 (575)
T ss_pred             hhhhcchHHHHHHHHHHhcccHHHHHHHHhccCCcccccccccCchH
Confidence            35679999999999865 59999999999999999999999765443

>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators

Probab=96.85  E-value=0.0013  Score=45.11  Aligned_cols=61  Identities=23%  Similarity=0.378  Sum_probs=42.9

Q ss_pred             cCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           32 TLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        32 ~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      ..||.++|..||.    +-+|+.=.--|..-+|||++|-.||++      +|++|+-- .||.+  -..|++|+
T Consensus         3 ~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~e------dF~~~~p~-~GdiL--~~~l~~~~   67 (68)
T cd08757           3 QYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTEE------EFREAAGS-YGSLL--YAELQRLT   67 (68)
T ss_pred             hhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCHH------HHHHHcCC-cHHHH--HHHHHHHh
Confidence            5799999999997    345665222344449999999999775      57777543 89964  45666553

SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.

>smart00251 SAM_PNT SAM / Pointed domain

Probab=96.60  E-value=0.003  Score=44.70  Aligned_cols=64  Identities=30%  Similarity=0.426  Sum_probs=45.5

Q ss_pred             CcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           27 MPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        27 ~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      .+.+-..||.+||..||+    +.+|+.-.  |..=+|||++|-.||++      +|.+|+- ..||.  |-..|+.+|
T Consensus        13 ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~~~--~~~f~m~G~~Lc~ls~e------dF~~~~p-~~Gdi--L~~hL~~Lk   80 (82)
T smart00251       13 IPADPQLWTEDHVLEWLEWAVKEFSLSPID--FSKFDMSGKELCSMSKE------EFLERAP-FGGDI--LWSHLQILR   80 (82)
T ss_pred             CCCChhhCCHHHHHHHHHHHHHhcCCCCCC--cccCCCCHHHHHcCCHH------HHHHHcC-CchHH--HHHHHHHHH
Confidence            355778999999999996    45665442  33338999999999765      4667765 67885  455666655

A subfamily of the SAM domain

>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor

Probab=96.54  E-value=0.0057  Score=43.30  Aligned_cols=67  Identities=27%  Similarity=0.182  Sum_probs=50.2

Q ss_pred             cCCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278           25 NDMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI  100 (144)
Q Consensus        25 l~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~  100 (144)
                      ++.+.+-..||.++|..||+    +-+|+.   -+..=+|||++|=.||++      +|.+|+-- -||.  |-..|.-+
T Consensus         4 L~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~---~~~~F~mnG~~LC~ls~e------dF~~r~p~-~Gdi--L~~hL~~l   71 (76)
T cd08532           4 LGISPDPYQWSPANVQKWLLWTEHQYRLPP---PPRCFELNGKDLCALSEE------DFRRRAPQ-GGDT--LHAQLDIW   71 (76)
T ss_pred             CCCCCChhhcCHHHHHHHHHHHHHHhCCCC---chhcCCCCHHHHHcCCHH------HHHHHcCC-chhH--HHHHHHHH
Confidence            45677888999999999985    568888   444449999999999775      47777544 7886  45566666


Q ss_pred             HHH
Q 032278          101 KVA  103 (144)
Q Consensus       101 kv~  103 (144)
                      |-|
T Consensus        72 k~a   74 (76)
T cd08532          72 KSA   74 (76)
T ss_pred             HHh
Confidence            654

SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.

>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold

Probab=96.36  E-value=0.0021  Score=46.54  Aligned_cols=40  Identities=20%  Similarity=0.403  Sum_probs=27.3

Q ss_pred             cccCCChhHHHHHHH-hcCcch---HHHHhhHcCcChhhhccCc
Q 032278           30 ALTLLSFQDVGLWLE-EINLGG---YRQIFKENGVNGEYLEGMS   69 (144)
Q Consensus        30 ~~~~WS~EDVa~WLe-eiGL~q---Yre~Fk~NnIdG~eLi~Lt   69 (144)
                      +|.+||.|||..|-. ++|+++   +-.-|++|+|+|.-|.-||
T Consensus         2 ~~~~Wsv~eVv~WC~~~L~l~~~d~l~~~l~en~I~Gd~L~eLt   45 (75)
T PF09235_consen    2 DFSNWSVDEVVSWCISSLELDDEDPLCNNLRENDITGDVLPELT   45 (75)
T ss_dssp             -TTT--HHHHHHHHHHHHSS-TTSCHHHHHHHTT--CCCHHHHH
T ss_pred             ccccccHHHHHHHHHHhcCCCCCCHHHHHHHHccCccchhhhcc
Confidence            578999999999964 346654   5566999999999998874

It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.

>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain

Probab=96.01  E-value=0.0058  Score=41.41  Aligned_cols=58  Identities=28%  Similarity=0.359  Sum_probs=41.4

Q ss_pred             cCCChhHHHHHHHh----cCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278           32 TLLSFQDVGLWLEE----INLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI  100 (144)
Q Consensus        32 ~~WS~EDVa~WLee----iGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~  100 (144)
                      ..||.++|..||.-    -+|+.  --+..-++||++|-.||++      +|.+|+-. .||.+  -..|+.+
T Consensus         3 ~~Wt~~~V~~Wl~w~~~~f~L~~--~~~~~F~m~G~~Lc~ls~e------dF~~~~p~-~GdiL--~~hL~~l   64 (66)
T cd08203           3 RLWTKEHVLQWLEWAVKEFSLPP--IDFSKFNMNGKELCLLTKE------DFLRRAPS-GGDIL--YEHLQLL   64 (66)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCC--CChhhcCCCHHHHHhCCHH------HHHHHcCC-cHHHH--HHHHHHH
Confidence            57999999999964    57776  3344449999999999765      47777544 88864  3444443

Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=95.88  E-value=0.0045  Score=35.06  Aligned_cols=17  Identities=24%  Similarity=0.575  Sum_probs=15.2

Q ss_pred             hhhhheecccceeEeee
Q 032278            8 LTFLVYGRKQKSVNIWF   24 (144)
Q Consensus         8 ~~~LATGSmDKsV~IWq   24 (144)
                      -.+|||||.|++|+||.
T Consensus        23 ~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   23 GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSEEEEEETTSEEEEEE
T ss_pred             cccceeeCCCCEEEEEC
Confidence            36899999999999995

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain

Probab=95.06  E-value=0.025  Score=41.26  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=43.9

Q ss_pred             CCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278           26 DMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI   91 (144)
Q Consensus        26 ~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i   91 (144)
                      +.|.+-..||.++|..||.    +-+|+..  -+..=++||++|=.||++      +|.+|+--.-||.+
T Consensus        14 ~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v--~~~~F~m~Gk~LC~Ls~e------dF~~r~p~~~GdiL   75 (89)
T cd08534          14 KIPYDPMEWTEDQVLHWVVWAVKEFSLTDI--DLSDWNITGRELCSLTQE------EFFQRVPKDPGDIF   75 (89)
T ss_pred             CCCCChHHcCHHHHHHHHHHHHHHcCCCCC--ChhhcCCCHHHHhcCCHH------HHHHHcCCCccHHH
Confidence            4567778999999999985    5677754  244448999999999875      57777654578864

SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.

>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]

Probab=94.92  E-value=0.033  Score=49.71  Aligned_cols=68  Identities=22%  Similarity=0.213  Sum_probs=52.6

Q ss_pred             CChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhh
Q 032278           34 LSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLK  106 (144)
Q Consensus        34 WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~  106 (144)
                      --..-|++||+.|||+.|.+.|-+|+-|-  |..++.+|.|. |.-|+.  ++=+|+=+|++-++.+|-+--.
T Consensus       213 ~~~~~~~ewL~~i~le~y~~~~L~nGYd~--le~~k~i~e~d-L~~lgI--~nP~Hr~kLL~av~~~~e~d~~  280 (361)
T KOG4384|consen  213 PHPKSLEEWLRRIGLEEYIETLLENGYDT--LEDLKDITEED-LEELGI--DNPDHRKKLLSAVELLKEIDSG  280 (361)
T ss_pred             CCchHHHHHHHHhhHHHHHHHHHHcchHH--HHHHHhccHHH-HHHhCC--CCHHHHHHHHHHHHHHHhcccc
Confidence            44678999999999999999999997652  55555554444 445666  8999999999999999876443

>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor

Probab=94.87  E-value=0.026  Score=39.94  Aligned_cols=56  Identities=27%  Similarity=0.291  Sum_probs=40.1

Q ss_pred             ccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278           29 HALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI   91 (144)
Q Consensus        29 l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i   91 (144)
                      .+-..||.++|..||+    |-+|+... .-.=.++||++|-.||++      +|.+++--.-||++
T Consensus         3 ~DP~~Wt~~~V~~WL~Wa~~ef~L~~~~-~~~F~~m~Gk~LC~Lske------dF~~~ap~~~GdiL   62 (75)
T cd08540           3 ADPTLWSTDHVRQWLEWAVKEYGLPDVD-VLLFQNIDGKELCKMTKD------DFQRLTPSYNADIL   62 (75)
T ss_pred             CChhhcCHHHHHHHHHHHHHHhCCCCCC-cccccCCCHHHHHhCCHH------HHHHHcCCCCchHH
Confidence            4557899999999985    66887743 212246999999999875      46677544567764

SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po

>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators

Probab=94.33  E-value=0.085  Score=37.89  Aligned_cols=64  Identities=20%  Similarity=0.265  Sum_probs=46.3

Q ss_pred             ccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           29 HALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        29 l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      .+-..||.++|..||.    +-+|+.-.-.|..=+|||++|=+||++      +|++++- ..||.+  -..|+.||
T Consensus         5 ~dP~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~e------eF~~~~p-~~GdvL--y~~lq~~~   72 (78)
T cd08538           5 VHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQE------EFIEAAG-ICGEYL--YFILQNIR   72 (78)
T ss_pred             CCccccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCHH------HHHHHcc-cchHHH--HHHHHHHH
Confidence            4557899999999985    567765433454559999999999765      4666643 388874  45677776

SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=94.28  E-value=0.067  Score=52.69  Aligned_cols=65  Identities=23%  Similarity=0.491  Sum_probs=51.0

Q ss_pred             hHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhh
Q 032278           37 QDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLK  106 (144)
Q Consensus        37 EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~  106 (144)
                      -.|++||+.|++++|.+.|.+++++-  +...+..|.|+++++   .++--||.=+++--|+.+|.-...
T Consensus       924 ~sv~~WL~aIkm~rY~~~F~~ag~~s--~~~V~q~s~eDl~~~---Gitl~GhqkkIl~SIq~m~~q~~~  988 (996)
T KOG0196|consen  924 RSVGDWLEAIKMGRYKEHFAAAGYTS--FEDVAQMSAEDLLRL---GITLAGHQKKILSSIQAMRAQMRQ  988 (996)
T ss_pred             CCHHHHHHHhhhhHHHHHHHhcCccc--HHHHHhhhHHHHHhh---ceeecchhHHHHHHHHHHHHHhcc
Confidence            46999999999999999999999975  344455666666543   457889998888888888876544

>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family

Probab=94.18  E-value=0.04  Score=38.65  Aligned_cols=55  Identities=25%  Similarity=0.339  Sum_probs=40.0

Q ss_pred             ccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278           29 HALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI   91 (144)
Q Consensus        29 l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i   91 (144)
                      .+-..||.++|..||+    +.+|..-  -|..=+|||++|=.||++      +|.+|+--.-||.+
T Consensus         2 ~DP~~Wt~~~V~~WL~Wa~~ef~L~~v--~~~~F~m~Gk~LC~ls~e------dF~~~~p~~~GdIL   60 (71)
T cd08533           2 KDPRLWTETHVRQWLLWAVNEFSLEGV--NFQKFCMSGRDLCALGKE------RFLELAPDFVGDIL   60 (71)
T ss_pred             cChhhCCHHHHHHHHHHHHHHcCCCCC--CcccCCCCHHHHHcCCHH------HHHHHcCCCcchHH
Confidence            3456899999999985    5677643  233338999999999875      47777544568874

SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.

>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1

Probab=93.93  E-value=0.1  Score=38.26  Aligned_cols=70  Identities=20%  Similarity=0.242  Sum_probs=47.7

Q ss_pred             cCCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278           25 NDMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI  100 (144)
Q Consensus        25 l~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~  100 (144)
                      ++.+.+-..||.++|..||+    |.+|...  -|..=+|||++|=.||++      +|.+|+----||.+  -..|..+
T Consensus        13 l~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i--~~~~F~m~Gk~LC~Ls~e------dF~~~~P~~~GdIL--~~HL~~L   82 (88)
T cd08542          13 LGIPKDPRQWTETHVRDWVMWAVNEFSLKGV--DFQKFCMNGAALCALGKE------CFLELAPDFVGDIL--WEHLEIL   82 (88)
T ss_pred             cCCCCChhhCCHHHHHHHHHHHHHHcCCCCC--CcccCCCCHHHHHcCCHH------HHHhHcCCCccHHH--HHHHHHH
Confidence            35577888999999999985    5677654  233336999999999875      57777533368874  3444444


Q ss_pred             HHHH
Q 032278          101 KVAC  104 (144)
Q Consensus       101 kv~~  104 (144)
                      +-.|
T Consensus        83 ~k~~   86 (88)
T cd08542          83 QKED   86 (88)
T ss_pred             HHhc
Confidence            4333

SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=93.70  E-value=0.028  Score=51.27  Aligned_cols=19  Identities=16%  Similarity=0.501  Sum_probs=17.5

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      +|+||||||+|++||++..
T Consensus       164 ~wf~tgs~DrtikIwDlat  182 (460)
T KOG0285|consen  164 EWFATGSADRTIKIWDLAT  182 (460)
T ss_pred             eeEEecCCCceeEEEEccc
Confidence            6999999999999999954

>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog

Probab=93.59  E-value=0.069  Score=36.77  Aligned_cols=57  Identities=25%  Similarity=0.307  Sum_probs=41.0

Q ss_pred             cCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHH
Q 032278           32 TLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRR   99 (144)
Q Consensus        32 ~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~   99 (144)
                      ..||.++|..||+    +-+|+.-  -+..=++||++|-.||++      +|++|+-. -||.+  -.++|+
T Consensus         3 ~~Ws~~~V~~WL~w~~~ef~L~~~--~~~~F~m~Gk~LC~ls~e------dF~~r~P~-~GdiL--~~~lq~   63 (66)
T cd08536           3 RSWSREHVRTWLRWVSARYQLEVV--DLDKFLMNGKGLCLMSLE------GFLYRVPV-GGKLL--YEDFQR   63 (66)
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCCC--CccccCCCHHHHHcCCHH------HHHhhcCC-ccHHH--HHHHHH
Confidence            5799999999986    5577773  233336999999999765      47777644 88875  445543

Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.

>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator

Probab=93.23  E-value=0.058  Score=39.70  Aligned_cols=58  Identities=26%  Similarity=0.383  Sum_probs=39.6

Q ss_pred             CCcccccCCChhHHHHHHH----hcCcchHHH-HhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278           26 DMPHALTLLSFQDVGLWLE----EINLGGYRQ-IFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI   91 (144)
Q Consensus        26 ~~~l~~~~WS~EDVa~WLe----eiGL~qYre-~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i   91 (144)
                      ..+.+-..||.++|..||.    +-+|...-- -|.  +|+|++|=.||++      +|.+++----||.+
T Consensus        12 ~IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~vd~~~F~--~m~Gk~LC~Lske------dF~~~~p~~~gdiL   74 (91)
T cd08541          12 IVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQ--NMDGKELCKMNKE------DFLRATSLYNTEVL   74 (91)
T ss_pred             eCCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhcc--CCCHHHHHhCCHH------HHHHHcCCCccHHH
Confidence            3466778999999999985    668864222 132  7999999999775      35555433346653

SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=93.16  E-value=0.033  Score=53.63  Aligned_cols=19  Identities=21%  Similarity=0.525  Sum_probs=16.6

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .++|||||||+.+||+++.
T Consensus       476 kLiAT~SqDktaKiW~le~  494 (775)
T KOG0319|consen  476 KLIATGSQDKTAKIWDLEQ  494 (775)
T ss_pred             ceEEecccccceeeecccC
Confidence            3689999999999999943

>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2

Probab=93.13  E-value=0.09  Score=38.64  Aligned_cols=58  Identities=29%  Similarity=0.418  Sum_probs=42.3

Q ss_pred             CCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278           26 DMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI   91 (144)
Q Consensus        26 ~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i   91 (144)
                      ..+.+-..||.++|..||.    +.+|..-.  |..=+|||++|=.||++      +|.+|+----||.+
T Consensus        14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~--~~~F~m~Gk~LC~Ls~e------dF~~~ap~~~GdIL   75 (89)
T cd08543          14 GIPKNPWLWTEQQVCQWLLWATNEFSLVNVN--FQQFGMNGQELCNLGKE------RFLELAPDFVGDIL   75 (89)
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHHcCCCCCC--cccCCCChHHHHcCCHH------HHHhHcCCCcchHH
Confidence            4567778999999999985    66777632  22236999999999875      47777543358875

SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.

>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein

Probab=92.72  E-value=0.079  Score=36.76  Aligned_cols=52  Identities=27%  Similarity=0.264  Sum_probs=37.8

Q ss_pred             ccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278           31 LTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI   91 (144)
Q Consensus        31 ~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i   91 (144)
                      -..||.++|..||.    +.+|+...  |..=++||++|-.||++      +|.+|+- .-||.+
T Consensus         3 P~~Wt~~~V~~WL~wa~~ef~L~~i~--~~~F~mnGk~LC~ls~e------dF~~r~p-~~GdiL   58 (68)
T cd08535           3 PRYWSRDDVLQWLRWAENEFSLPPID--SNTFEMNGKALCLLTKE------DFRYRSP-HSGDVL   58 (68)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCCCC--hhccCCCHHHHhcCCHH------HHhhhCC-CchHHH
Confidence            36799999999985    55776632  33347999999999765      4666754 468864

SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.

>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]

Probab=92.53  E-value=0.14  Score=48.59  Aligned_cols=58  Identities=16%  Similarity=0.287  Sum_probs=47.0

Q ss_pred             cccCCChhHHHHHHHhc--CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHH
Q 032278           30 ALTLLSFQDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITL   93 (144)
Q Consensus        30 ~~~~WS~EDVa~WLeei--GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl   93 (144)
                      .+..||+..|++|++-+  -+.+|...|+.+.|.|+.|+++.-.+.|-+    .+  -.|||.++.
T Consensus         3 ~v~~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le~l----g~--rrig~qeli   62 (638)
T KOG1738|consen    3 PVETWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLETL----GV--RRIGHQELI   62 (638)
T ss_pred             cccccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHHHH----hh--hhhhhHHHH
Confidence            56899999999999987  489999999999999999999966655544    33  456666544

>smart00320 WD40 WD40 repeats

Probab=92.19  E-value=0.074  Score=25.96  Aligned_cols=16  Identities=13%  Similarity=0.540  Sum_probs=14.5

Q ss_pred             hhhheecccceeEeee
Q 032278            9 TFLVYGRKQKSVNIWF   24 (144)
Q Consensus         9 ~~LATGSmDKsV~IWq   24 (144)
                      .++++|+.|+++.+|+
T Consensus        25 ~~~~~~~~d~~~~~~~   40 (40)
T smart00320       25 KYLASASDDGTIKLWD   40 (40)
T ss_pred             CEEEEecCCCeEEEcC
Confidence            5789999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]

Probab=91.76  E-value=0.092  Score=44.13  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=32.9

Q ss_pred             hhHHHHHHHhcCcchHHHHhhHcCcChhhhccCccc
Q 032278           36 FQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMF   71 (144)
Q Consensus        36 ~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~   71 (144)
                      -|+|--||..+||+.|..+|+...||=..|..||-+
T Consensus       151 ~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~lte~  186 (216)
T KOG4374|consen  151 TEGVLMELGILGLGAYWKMFEAIEVDMDNLRLLTEE  186 (216)
T ss_pred             cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence            478999999999999999999999999999999543

>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors

Probab=91.67  E-value=0.11  Score=36.66  Aligned_cols=55  Identities=25%  Similarity=0.347  Sum_probs=37.8

Q ss_pred             ccccCCChhHHHHHHH----hcCcchHHHHhhH-cCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278           29 HALTLLSFQDVGLWLE----EINLGGYRQIFKE-NGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI   91 (144)
Q Consensus        29 l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~-NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i   91 (144)
                      .+-..||.++|..||+    +-+|+.. + +.. .+|||++|-.||++      +|.++.---=||.+
T Consensus         3 ~DP~~Wt~~~V~~WL~Wa~~ef~L~~i-~-~~~F~~m~Gk~LC~lt~e------dF~~~~~~~~GdiL   62 (75)
T cd08531           3 ADPTLWTREHVRQWLEWAVKEYGLQDV-D-VSRFQNIDGKELCKMTKE------DFLRLTSAYNADVL   62 (75)
T ss_pred             CChhhcCHHHHHHHHHHHHHHcCCCCC-C-hhhccCCChHHHHcCCHH------HHHHHcCCCcchHH
Confidence            4557899999999985    5677653 2 233 38999999999775      46666322246763

SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=90.99  E-value=0.094  Score=48.15  Aligned_cols=28  Identities=18%  Similarity=0.247  Sum_probs=22.7

Q ss_pred             hhhheecccceeEeeec--------------CCcccccCCCh
Q 032278            9 TFLVYGRKQKSVNIWFN--------------DMPHALTLLSF   36 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql--------------~~~l~~~~WS~   36 (144)
                      -|+|+||||++|.||..              ++.+.+..|+.
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP  441 (459)
T ss_pred             ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC
Confidence            48999999999999998              22466777876

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=90.33  E-value=0.11  Score=47.16  Aligned_cols=17  Identities=29%  Similarity=0.495  Sum_probs=16.0

Q ss_pred             hhhheecccceeEeeec
Q 032278            9 TFLVYGRKQKSVNIWFN   25 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql   25 (144)
                      .+|||||+||+|.+|++
T Consensus       286 ~ilAT~S~D~tV~LwDl  302 (422)
T KOG0264|consen  286 FILATGSADKTVALWDL  302 (422)
T ss_pred             ceEEeccCCCcEEEeec
Confidence            47999999999999999

>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues []

Probab=89.15  E-value=0.37  Score=29.35  Aligned_cols=19  Identities=21%  Similarity=0.356  Sum_probs=16.7

Q ss_pred             ccCCChhHHHHHHHhcCcc
Q 032278           31 LTLLSFQDVGLWLEEINLG   49 (144)
Q Consensus        31 ~~~WS~EDVa~WLeeiGL~   49 (144)
                      |..||.+|..+||++.|.+
T Consensus         1 fdtWs~~~L~~wL~~~gi~   19 (38)
T PF10281_consen    1 FDTWSDSDLKSWLKSHGIP   19 (38)
T ss_pred             CCCCCHHHHHHHHHHcCCC
Confidence            5789999999999997765

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=89.09  E-value=0.15  Score=47.38  Aligned_cols=50  Identities=22%  Similarity=0.390  Sum_probs=37.8

Q ss_pred             hhhheecccceeEeeecC---------------CcccccCCChhHH---------HHHHHhcCcchHHHHhhHc
Q 032278            9 TFLVYGRKQKSVNIWFND---------------MPHALTLLSFQDV---------GLWLEEINLGGYRQIFKEN   58 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~---------------~~l~~~~WS~EDV---------a~WLeeiGL~qYre~Fk~N   58 (144)
                      ++|||||.|.|.-||+..               .+..++.||+||-         ..||=+.-=++.+..|..+
T Consensus       237 kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~  310 (519)
T KOG0293|consen  237 KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG  310 (519)
T ss_pred             eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC
Confidence            689999999999999982               2668899998862         2455555566667777666

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=88.16  E-value=0.2  Score=48.96  Aligned_cols=54  Identities=24%  Similarity=0.363  Sum_probs=43.4

Q ss_pred             ccccCCChhHHH-HHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhH
Q 032278           29 HALTLLSFQDVG-LWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRR   82 (144)
Q Consensus        29 l~~~~WS~EDVa-~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r   82 (144)
                      +.|-++.-|=|| +||-.+||+||+..|-+-.+|-+-|.+|||-.++--|.-..-
T Consensus       667 laygdmnHewigneWLPslGLpQYrsyFme~LvDARMLdhLsKkdLr~~Lkmvds  721 (916)
T KOG0249|consen  667 LAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLSKKDLRGHLKMVDS  721 (916)
T ss_pred             hhhcccccceeccccccccCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            344555555565 599999999999999999999999999999888876654433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=87.30  E-value=0.31  Score=47.24  Aligned_cols=19  Identities=37%  Similarity=0.553  Sum_probs=17.0

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      -||||||.|+||.+|++++
T Consensus       378 ~llat~sKD~svilWr~~~  396 (775)
T KOG0319|consen  378 DLLATGSKDKSVILWRLNN  396 (775)
T ss_pred             cEEEEecCCceEEEEEecC
Confidence            4899999999999999943

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=87.02  E-value=0.22  Score=48.55  Aligned_cols=18  Identities=33%  Similarity=0.601  Sum_probs=16.9

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      +|||||+-||.|+||...
T Consensus       233 ~~lATGGRDK~vkiWd~t  250 (839)
T KOG0269|consen  233 EWLATGGRDKMVKIWDMT  250 (839)
T ss_pred             ceeeecCCCccEEEEecc
Confidence            699999999999999994

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=86.29  E-value=0.3  Score=46.94  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=22.3

Q ss_pred             hhhheecccceeEeeec-----------CCcccccCCCh
Q 032278            9 TFLVYGRKQKSVNIWFN-----------DMPHALTLLSF   36 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql-----------~~~l~~~~WS~   36 (144)
                      .|||+||.|+||+||-+           +.-+.+..|++
T Consensus       413 ~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P  451 (733)
T KOG0650|consen  413 EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNP  451 (733)
T ss_pred             ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecC
Confidence            58999999999999998           33455666665

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=84.50  E-value=0.36  Score=44.54  Aligned_cols=33  Identities=24%  Similarity=0.193  Sum_probs=25.8

Q ss_pred             hhheecccceeEeeecCC------------cccccCCChhHHHHHHH
Q 032278           10 FLVYGRKQKSVNIWFNDM------------PHALTLLSFQDVGLWLE   44 (144)
Q Consensus        10 ~LATGSmDKsV~IWql~~------------~l~~~~WS~EDVa~WLe   44 (144)
                      .|||||.|-||++|+++-            =..+.+||+|  +.||.
T Consensus       129 ~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD--gk~iA  173 (480)
T KOG0271|consen  129 RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD--GKKIA  173 (480)
T ss_pred             eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC--cchhh
Confidence            689999999999999933            2367889987  45554

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=84.45  E-value=0.4  Score=46.10  Aligned_cols=16  Identities=31%  Similarity=0.729  Sum_probs=15.2

Q ss_pred             hhheecccceeEeeec
Q 032278           10 FLVYGRKQKSVNIWFN   25 (144)
Q Consensus        10 ~LATGSmDKsV~IWql   25 (144)
                      +|-+.||||||++|++
T Consensus       382 fLLSSSMDKTVRLWh~  397 (712)
T KOG0283|consen  382 FLLSSSMDKTVRLWHP  397 (712)
T ss_pred             eeEeccccccEEeecC
Confidence            6889999999999999

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.41  E-value=0.5  Score=41.54  Aligned_cols=20  Identities=35%  Similarity=0.391  Sum_probs=17.5

Q ss_pred             hhhheecccceeEeeecCCc
Q 032278            9 TFLVYGRKQKSVNIWFNDMP   28 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~   28 (144)
                      --||+|+||.+|+||+.++.
T Consensus       176 krlvSgGcDn~VkiW~~~~~  195 (299)
T KOG1332|consen  176 KRLVSGGCDNLVKIWKFDSD  195 (299)
T ss_pred             ceeeccCCccceeeeecCCc
Confidence            45899999999999999773

>PF12979 DUF3863: Domain of Unknown Function with PDB structure (DUF3863); InterPro: IPR024334 This entry represents a functionally uncharacterised domain found in bacterial sequences

Probab=83.88  E-value=0.23  Score=44.08  Aligned_cols=68  Identities=19%  Similarity=0.404  Sum_probs=42.1

Q ss_pred             CCcccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcc-------cchHHHHHHHhHhhhccchHHHHH
Q 032278           26 DMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSM-------FTTEQILRFIRRCHMKWGDFITLC   94 (144)
Q Consensus        26 ~~~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk-------~T~e~il~~i~r~~~k~gd~itl~   94 (144)
                      +..+++..|-.|+ .+|=.-.|...++++|..|+=||+--=.+|-       ..-.||-+|+-+|+-|+||-|++.
T Consensus        22 EvsRdvkL~~rDE-~~wHtl~gVr~~reAfa~~nP~grLTWgft~nALed~~~nyr~IR~y~v~c~~k~GDevsyf   96 (351)
T PF12979_consen   22 EVSRDVKLHPRDE-TSWHTLEGVRALREAFASNNPDGRLTWGFTLNALEDGRPNYRQIRDYVVECQQKYGDEVSYF   96 (351)
T ss_dssp             BSSSS-BSS-----GGG--HHHHHHHHHHHHTT-TT---EEEE-HHHHH--SHHHHHHHHHHHHHHHHH--EEEE-
T ss_pred             eeecccccccccc-chhhHHHHHHHHHHHHHhcCCCceEEEeeecchhhcCChhHHHHHHHHHHHHHHhCCceeec
Confidence            4567777786554 5788889999999999999999985433332       223589999999999999988753

The structure of one of the sequences, A6LGL1 from SWISSPROT from Parabacteroides distasonis atcc 8503, has been determined.; PDB: 3LM3_A.

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=83.81  E-value=0.56  Score=41.40  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=19.4

Q ss_pred             hhhhhhhheecccceeEeeecCC
Q 032278            5 FDALTFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         5 ~~~~~~LATGSmDKsV~IWql~~   27 (144)
                      --.-.+|||.|-||+|+||..+.
T Consensus       224 SPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  224 SPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             CCCCcEEEeecCCceEEEEecCC
Confidence            34568999999999999999854

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=83.62  E-value=0.54  Score=45.23  Aligned_cols=17  Identities=18%  Similarity=0.612  Sum_probs=16.1

Q ss_pred             hhhheecccceeEeeec
Q 032278            9 TFLVYGRKQKSVNIWFN   25 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql   25 (144)
                      -|+||||-||||++|.+
T Consensus       548 ~Y~aTGSsD~tVRlWDv  564 (707)
T KOG0263|consen  548 NYVATGSSDRTVRLWDV  564 (707)
T ss_pred             cccccCCCCceEEEEEc
Confidence            48999999999999999

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=81.56  E-value=0.76  Score=42.42  Aligned_cols=20  Identities=20%  Similarity=0.423  Sum_probs=17.3

Q ss_pred             hhheecccceeEeeecCCcc
Q 032278           10 FLVYGRKQKSVNIWFNDMPH   29 (144)
Q Consensus        10 ~LATGSmDKsV~IWql~~~l   29 (144)
                      .|||||.|.|+|||+|..+.
T Consensus       359 ~lATgs~Dnt~kVWDLR~r~  378 (459)
T KOG0272|consen  359 HLATGSSDNTCKVWDLRMRS  378 (459)
T ss_pred             EEeecCCCCcEEEeeecccc
Confidence            58999999999999996533

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=80.52  E-value=0.78  Score=44.53  Aligned_cols=28  Identities=11%  Similarity=0.114  Sum_probs=20.8

Q ss_pred             hhhheecccceeEeeecCCcccccCCCh
Q 032278            9 TFLVYGRKQKSVNIWFNDMPHALTLLSF   36 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~l~~~~WS~   36 (144)
                      ++||+||-|+.|+||+|...-+...|..
T Consensus       207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~  234 (764)
T KOG1063|consen  207 LLLASSSQDRYIRIWRIVLGDDEDSNER  234 (764)
T ss_pred             EEEEecCCceEEEEEEEEecCCcccccc
Confidence            5899999999999999965443333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	4e-06
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	5e-06
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	7e-06
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	7e-06
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	9e-06
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	1e-05
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	1e-05
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	2e-05
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	3e-05
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	3e-05
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	3e-05
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	4e-05
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	5e-05
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	5e-05
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	6e-05
2eam_A	80	Putative 47 kDa protein; cell-free protein synthes	7e-05
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	8e-05
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	3e-04
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	3e-04
2dl0_A	97	SAM and SH3 domain-containing protein 1; cell-free	3e-04
1wwv_A	91	Connector enhancer of kinase suppressor of RAS 1;	4e-04
2k4p_A	86	Phosphatidylinositol-3,4,5-trisphosphate 5- phosph	6e-04
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	6e-04

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A Length = 149

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 10/42 (23%), Positives = 14/42 (33%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQI 76
          S + V  WL    L  Y   F   G +   +  M+      I
Sbjct: 9  SSEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAI 50

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus} Length = 74

 Score = 41.2 bits (97), Expect = 5e-06
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYL 65
          S Q V  WL  ++L  Y   F    ++GE L
Sbjct: 8  SVQQVSHWLVGLSLDQYVSEFSAQNISGEQL 38

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A Length = 76

 Score = 40.8 bits (96), Expect = 7e-06
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 37 QDVGLWLEEINLGGYRQIFKENGVNGEYLEGMS 69
           DVG WLE I+LG +R  F+++ + G +L  ++
Sbjct: 8  FDVGDWLESIHLGEHRDRFEDHEIEGAHLPALT 40

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus} Length = 265

 Score = 43.3 bits (101), Expect = 7e-06
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 25 NDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMS 69
          +D+       + + V  WL E  LG Y    K   ++G+ L   S
Sbjct: 9  SDLDMPFAKWTKEQVCSWLAEQGLGSYLSSGKHWIISGQTLLQAS 53

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens} Length = 81

 Score = 40.4 bits (95), Expect = 9e-06
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 11/50 (22%)

Query: 16 KQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYL 65
          K + V++W             ++V  WLE ++L  Y+ IF  + + G  L
Sbjct: 3  KTRPVHLW-----------GTEEVAAWLEHLSLCEYKDIFTRHDIRGSGL 41

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
          +F  V  WL  I +  YR  F   G     L+ ++  T+E +LR
Sbjct: 21 AFTTVDDWLSAIKMVQYRDSFLTAGFTS--LQLVTQMTSEDLLR 62

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens} Length = 83

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
                 +F  VG WL  I +G Y + F   G      E +S  + E +LR
Sbjct: 7  QRQPHYSAFGSVGEWLRAIKMGRYEESFAAAGFGS--FELVSQISAEDLLR 55

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
           F+ V  WLE I +  Y + F   G     +E +   T + + R
Sbjct: 11 PFRTVSEWLESIKMQQYTEHFMAAGYTA--IEKVVQMTNDDVKR 52

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 81

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
          S   VG WL+ I +G YR  F   G +   L  +     + +  
Sbjct: 6  SGLTVGDWLDSIRMGRYRDHFAAGGYSS--LGMVLRMNAQDVRA 47

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens} Length = 82

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
             +   S   V  WLE I +  Y + F   G     +E +   T + I R
Sbjct: 8  SGLVPRGSHMTVSEWLESIKMQQYTEHFMAAGYTA--IEKVVQMTNDDIKR 56

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A Length = 82

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 34 LSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
          + ++ V  WLE I +  Y   F   G++   +E +   T E + +
Sbjct: 21 IPYRTVSEWLESIRMKRYILHFHSAGLDT--MECVLELTAEDLTQ 63

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2 Length = 94

 Score = 39.1 bits (91), Expect = 4e-05
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSM 70
          P +    +   VG WL+ I +  Y+  F   G    E +  MS 
Sbjct: 18 PSSPEFSAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQ 61

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A Length = 82

 Score = 38.6 bits (90), Expect = 5e-05
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
          SF  V  WLE I +G Y++ F   G      + +S    E ILR
Sbjct: 10 SFNTVDEWLEAIKMGQYKESFANAGFTS--FDVVSQMMMEDILR 51

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens} Length = 100

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
             D+ +WL  ++L  Y   F+ +G+             E++ +
Sbjct: 25 QDLDIAVWLATVHLEQYADTFRRHGLAT--AGAARGLGHEELKQ 66

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens} Length = 90

 Score = 38.6 bits (90), Expect = 6e-05
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 15 RKQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTE 74
                N++F   P      +F  VG WL+ I +  Y+  F   G N   LE ++  T E
Sbjct: 7  HSSGRENLYFQGTPD---FTTFCSVGEWLQAIKMERYKDNFTAAGYNS--LESVARMTIE 61

Query: 75 QILR 78
           ++ 
Sbjct: 62 DVMS 65

>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 38.3 bits (89), Expect = 7e-05
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 36 FQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
           Q VG WLE I L  Y      NG +     G ++   + +L 
Sbjct: 12 VQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLE 54

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} Length = 86

 Score = 38.3 bits (89), Expect = 8e-05
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
                + F+ V  WLE I +  Y + F   G     +E +   T + I R
Sbjct: 13 NLYFQGVPFRTVSEWLESIKMQQYTEHFMAAGYTA--IEKVVQMTNDDIKR 61

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens} Length = 103

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
            Q VG WLE I L  Y      NG +     G ++   + +L 
Sbjct: 21 PVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLE 64

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 83

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 37 QDVGLWLEEIN--LGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
            V  W++ ++  L  Y + F+   ++G+ L  +    T Q L 
Sbjct: 14 SQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRI----THQELE 53

>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 2/50 (4%)

Query: 29 HALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
            ++      V  WL  I L  Y       G +   L  +   +   +  
Sbjct: 16 KPVSPGCISSVSDWLISIGLPMYAGTLSTAGFS--TLSQVPSLSHTCLQE 63

>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 91

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 37 QDVGLWLEEINLGGYRQIFKENGVNGEYL 65
            V  WL  ++       F++  + G+ L
Sbjct: 17 GKVATWLRGLDDSLQDYPFEDWQLPGKNL 45

>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B Length = 86

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 34 LSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
          L    +  WL  I L  Y +    NG +   LE +S  T E +  
Sbjct: 24 LGEAGMSAWLRAIGLERYEEGLVHNGWDD--LEFLSDITEEDLEE 66

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens} Length = 148

 Score = 36.7 bits (84), Expect = 6e-04
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQIL 77
          S Q VG WLE I L  Y      NG +     G ++   + +L
Sbjct: 13 SVQTVGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLL 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
3bs7_A	78	Protein aveugle; sterIle alpha motif (SAM) domain,	99.67
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	99.66
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	99.63
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	99.62
3bs5_A	106	Protein aveugle; sterIle alpha motif, SAM domain,	99.62
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	99.6
2e8o_A	103	SAM domain and HD domain-containing protein 1; cel	99.6
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	99.59
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	99.58
1pk1_B	89	Sex COMB on midleg CG9495-PA; hetero SAM domain, p	99.56
2d8c_A	97	Phosphatidylcholine:ceramide cholinephosphotransfe	99.56
1kw4_A	89	Polyhomeotic; SAM domain, polycomb group, polymer,	99.55
1wwv_A	91	Connector enhancer of kinase suppressor of RAS 1;	99.36
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	99.34
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	99.29
1ow5_A	85	Serine/threonine-protein kinase STE11; MAP kinase,	99.22
2l5y_A	150	Stromal interaction molecule 2; EF-hand, SAM domai	99.2
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	99.19
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	99.14
2eam_A	80	Putative 47 kDa protein; cell-free protein synthes	99.13
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	99.12
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	99.1
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	99.09
2k4p_A	86	Phosphatidylinositol-3,4,5-trisphosphate 5- phosph	99.08
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	99.08
2dl0_A	97	SAM and SH3 domain-containing protein 1; cell-free	99.07
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	99.07
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	99.03
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	99.03
2k60_A	150	Protein (stromal interaction molecule 1); EF-hand,	99.01
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	98.95
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	98.95
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	98.93
1x40_A	91	ARAP2; ASAP-related protein2, GTPase activity, sig	98.9
2lmr_A	101	ODIN, ankyrin repeat and SAM domain-containing pro	98.86
2dkz_A	84	Hypothetical protein LOC64762; cell-free protein s	98.86
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	98.83
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	98.81
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	98.77
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	98.75
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	98.68
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	98.62
1uqv_A	85	STE50 protein; SAM, sterIle alpha motif, helical,	98.5
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	98.46
2eap_A	90	Lymphocyte cytosolic protein 2; cell-free protein	98.3
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	97.91
2qar_B	93	Telsam domain; polymer, crystallization modules, s	97.91
1sv0_C	82	Modulator of the activity of ETS CG15085-PA; alpha	97.7
2d3d_A	88	VTS1 protein; RNA binding, SAM domain, SRE hairpin	97.54
1ji7_A	89	ETS-related protein TEL1; helical polymer, transcr	97.54
2y9t_A	82	Tumor protein 63; apoptosis, sterIle alpha motif,	97.42
2b6g_A	119	VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin	97.41
2y9u_A	69	Tumor protein 63; apoptosis, sterIle alpha motif,	97.41
2es6_A	101	VTS1P; SAM domain, protein structure, gene regulat	97.41
1oxj_A	173	RNA-binding protein smaug; SAM domain, PHAT domain	96.79
1wwu_A	99	Hypothetical protein FLJ21935; structural genomics	96.77
2e8m_A	99	Epidermal growth factor receptor kinase substrate	96.76
1x66_A	98	Friend leukemia integration 1 transcription factor	96.2
1sxd_A	91	GA repeat binding protein, alpha; alpha helical, t	96.13
1sv0_A	85	ETS DNA-binding protein pokkuri; alpha-helix, 3(10	96.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	95.36
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.0
2dkx_A	96	SAM pointed domain-containing ETS transcription fa	94.72
2jv3_A	110	ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, M	94.55
2h80_A	81	STAR-related lipid transfer protein 13; helical bu	94.15
2dky_A	91	RHO-GTPase-activating protein 7; cell-free protein	94.08
2ytu_A	128	Friend leukemia integration 1 transcription factor	93.49
1sxe_A	97	Transcriptional regulator ERG; alpha helical, sign	93.12
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	93.03
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	92.92
3ow8_A	321	WD repeat-containing protein 61; structural genomi	91.87
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	91.13
2e8p_A	92	ELF3 protein; cell-free protein synthesis, protein	90.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	90.69
2pm7_B	297	Protein transport protein SEC13, protein transport	90.66
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	90.55
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	90.54
2qb0_B	241	Telsam domain - lysozyme chimera; helical polymer,	90.53
2pm7_B	297	Protein transport protein SEC13, protein transport	90.46
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	89.31
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	89.1
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	88.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	88.5
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	88.22
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	88.22
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	88.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	87.87
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	87.81
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	87.54
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	87.46
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	87.46
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	87.34
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	87.19
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	87.14
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	87.14
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	86.98
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	86.86
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	86.78
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	85.66
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	85.53
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	85.52
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	85.48
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	85.23
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	85.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	84.87
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	84.65
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	84.45
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	84.4
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	84.36
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	83.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	83.71
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	83.62
3ow8_A	321	WD repeat-containing protein 61; structural genomi	83.31
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	83.06
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	82.68
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	82.32
3idw_A	72	Actin cytoskeleton-regulatory complex protein SLA;	82.1
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	81.85
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	81.7
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	81.61
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	81.54
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	81.5
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	81.39
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	81.3
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	81.3
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	81.23
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	81.11
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	80.72
3jrp_A	379	Fusion protein of protein transport protein SEC13	80.57
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	80.52
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	80.43
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	80.16

>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}

Probab=99.67  E-value=7.4e-17  Score=107.53  Aligned_cols=69  Identities=19%  Similarity=0.327  Sum_probs=61.1

Q ss_pred             cccCCChhHHHHHHHhc--CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHH
Q 032278           30 ALTLLSFQDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        30 ~~~~WS~EDVa~WLeei--GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      ++..||+|||+.||+.+  ||++|.+.|++|+|||+.|+.||    ++-|+.++.  .+.||+.++..+++.+|...
T Consensus         2 ~v~~Wt~~~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~----~~dL~~lGI--~~~g~r~~il~~I~~Lr~~~   72 (78)
T 3bs7_A            2 AVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRIT----DSSLQRMGV--TDNRDREAIWREIVKQRLKT   72 (78)
T ss_dssp             CGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCC----HHHHHHHTC--CCHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCC----HHHHhHcCC--CCHHHHHHHHHHHHHHHhHH
Confidence            57899999999999996  99999999999999999999994    445666666  78999999999999998654

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}

Probab=99.66  E-value=6.5e-17  Score=106.91  Aligned_cols=72  Identities=25%  Similarity=0.339  Sum_probs=62.2

Q ss_pred             ccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhh
Q 032278           29 HALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLK  106 (144)
Q Consensus        29 l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~  106 (144)
                      .++..||++||+.||+.+||++|.+.|.+|+|||..|+.|+.    +-|..++.  .+.||+.+++..++.+|.+.-|
T Consensus         2 ~~v~~Ws~~~V~~WL~~~gl~~y~~~F~~~~i~g~~Ll~l~~----~dL~~lGI--~~~g~r~kil~~i~~L~~~~ek   73 (74)
T 2gle_A            2 HMVHEWSVQQVSHWLVGLSLDQYVSEFSAQNISGEQLLQLDG----NKLKALGM--TSSQDRALVKKKLKEMKMSLEK   73 (74)
T ss_dssp             CCGGGCCSGGGHHHHHHTTTHHHHHHHTTTTCCHHHHHTCCH----HHHHTTTC--CCHHHHHHHHHHHHSHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHhhCCH----HHHHHcCC--CCHHHHHHHHHHHHHHHHHhhc
Confidence            457899999999999999999999999999999999999953    33555554  5699999999999999987655

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}

Probab=99.63  E-value=3.4e-16  Score=106.24  Aligned_cols=70  Identities=20%  Similarity=0.398  Sum_probs=60.1

Q ss_pred             cccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA  103 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~  103 (144)
                      +.++..||++||++||+.+||++|.+.|.+|+|||..|..||    ++-|..|+.  .+.|++.+++..++.++..
T Consensus         4 ~~~v~~Ws~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt----~~dL~~lGI--~~~ghr~kIl~aI~~L~~~   73 (81)
T 3bq7_A            4 TRPVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLE----RRDLKDLGV--TKVGHMKRILCGIKELSRS   73 (81)
T ss_dssp             -CCGGGCCHHHHHHHHHHTTCGGGHHHHHHTTCCHHHHTTCC----HHHHHHTTC--CCHHHHHHHHHHHHHHHC-
T ss_pred             CCChhhCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHCcCC----HHHHhHcCC--CCHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999984    344555665  7899999999999988754

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A

Probab=99.62  E-value=3.6e-16  Score=105.03  Aligned_cols=66  Identities=29%  Similarity=0.451  Sum_probs=56.8

Q ss_pred             ccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           31 LTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        31 ~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      +..||++||++||+.+||++|.+.|.+|+|||..|..||    ++-|..++.  .+.|++.+++..++.++-
T Consensus         2 v~~Ws~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt----~~dL~~lGI--~~~Ghr~kIl~aI~~l~~   67 (76)
T 2f3n_A            2 LQLWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALT----KEDFVELGV--TRVGHRENIERALRQLDG   67 (76)
T ss_dssp             GGGCCHHHHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCC----HHHHHHTTC--CCHHHHHHHHHHHHTC--
T ss_pred             hhhCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHccCC----HHHHHHcCC--CChhHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999994    444566665  679999999999988763

>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}

Probab=99.62  E-value=4.6e-16  Score=111.67  Aligned_cols=72  Identities=21%  Similarity=0.348  Sum_probs=63.4

Q ss_pred             CcccccCCChhHHHHHHHhc--CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHH
Q 032278           27 MPHALTLLSFQDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        27 ~~l~~~~WS~EDVa~WLeei--GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      .+.++..||++||+.||+.+  ||++|.+.|++|+|+|+.|+.|    +++-|+.++.  .+.||+.++..+|+.+|...
T Consensus        19 ~~~~v~~Wt~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~L----t~~dLk~LGI--~~~GhR~kIl~~I~~Lr~~~   92 (106)
T 3bs5_A           19 RPKAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRI----TDSSLQRMGV--TDNRDREAIWREIVKQRLKT   92 (106)
T ss_dssp             -CCCGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTC----CHHHHHHHTC--CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhC----CHHHHHhcCC--CCHHHHHHHHHHHHHHHHHh
Confidence            35678999999999999999  9999999999999999999999    4455666766  88999999999999998654

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.60  E-value=4.4e-16  Score=108.12  Aligned_cols=70  Identities=24%  Similarity=0.343  Sum_probs=60.9

Q ss_pred             cccccCCChhHHHHHHHhcCc--chHHHHhhHcCcChhhhccCcccchHHHHHH--HhHhhhccchHHHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEINL--GGYRQIFKENGVNGEYLEGMSMFTTEQILRF--IRRCHMKWGDFITLCKELRRIKVA  103 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeeiGL--~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~--i~r~~~k~gd~itl~~el~~~kv~  103 (144)
                      ..++..||+|||+.||+.+||  ++|.+.|.+|+|||+.|+.||    ++-|+-  ++.  .+.||+.+++.+|+.+|..
T Consensus        14 ~~~v~~Wt~~dV~~WL~~~gl~~~~Y~~~F~~~~IdG~~Ll~Lt----~~dL~~~~LGI--~~~g~r~~il~~I~~Lr~~   87 (91)
T 1v85_A           14 HKAVDKWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLT----EEEFSRAPYTI--ENSSHRRVILTELERVRSG   87 (91)
T ss_dssp             HSCGGGCCHHHHHHHHHHHCGGGHHHHHHHHHTTCCHHHHHHCC----HHHHHSTTTCC--CCHHHHHHHHHHHHHHHSC
T ss_pred             CCCcccCCHHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHhcCC----HHHHhccCCCC--CCHHHHHHHHHHHHHHHhc
Confidence            457899999999999999999  999999999999999999994    444443  554  7899999999999999853

>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=7.3e-16  Score=109.04  Aligned_cols=68  Identities=15%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             cccccCCChhHHHHHHHhcCcch--HHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEINLGG--YRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeeiGL~q--Yre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      ..++..||+|||+.||+++||++  |.+.|++|+|||..|+.|+    ++-|+.++.  .+.||+.+++.+|+.++
T Consensus        24 ~~~v~~Ws~~~V~~WL~~lgl~~~~y~~~F~~~~I~G~~Ll~Lt----~~dLkeLGI--~~~G~R~kil~~I~~Lr   93 (103)
T 2e8o_A           24 HPDYKTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLD----ESRFENLGV--SSLGERKKLLSYIQRLV   93 (103)
T ss_dssp             CSCGGGCHHHHHHHHHHHHTCCCHHHHHHHHHTTCCTTTTTTCC----HHHHHHTTC--CCHHHHHHHHHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHhCC----HHHHHHcCC--CCHHHHHHHHHHHHHHH
Confidence            56889999999999999999999  9999999999999999995    555666665  68999999999999886

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}

Probab=99.59  E-value=1.4e-15  Score=101.78  Aligned_cols=70  Identities=16%  Similarity=0.211  Sum_probs=60.9

Q ss_pred             cccCCChhHHHHHHHhc--CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHh
Q 032278           30 ALTLLSFQDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACL  105 (144)
Q Consensus        30 ~~~~WS~EDVa~WLeei--GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~  105 (144)
                      ++..||++||+.||+.+  ||++|.+.|.+|+|+|+.|+.||    ++-|+.++.  .+.||+.++...++.++-.+.
T Consensus         3 ~v~~Ws~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~----~~dL~~lGI--~~~ghr~~il~~I~~L~~~~~   74 (80)
T 3bs5_B            3 PVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRIT----HQELEDLGV--SRIGHQELILEAVDLLCALNY   74 (80)
T ss_dssp             CGGGCCHHHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCC----HHHHHHTTC--CCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCHHHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCC----HHHHHHcCC--CCHHHHHHHHHHHHHHHHhhh
Confidence            57899999999999999  69999999999999999999994    444555555  789999999999999987654

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=2.2e-15  Score=101.91  Aligned_cols=72  Identities=15%  Similarity=0.198  Sum_probs=61.9

Q ss_pred             cccccCCChhHHHHHHHhc--CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHh
Q 032278           28 PHALTLLSFQDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACL  105 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeei--GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~  105 (144)
                      ..++..||++||++||+.+  ||++|.+.|.+|+|+|+.|+.|+    ++-|+-++.  .+.||+.++..+++.++-.+.
T Consensus         5 ~~~v~~Wt~~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt----~~dL~~LGI--~~~ghr~~il~~I~~L~~~~~   78 (83)
T 2ean_A            5 SSGVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRIT----HQELEDLGV--SRIGHQELILEAVDLLCALNS   78 (83)
T ss_dssp             CCSGGGCCTTHHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCC----HHHHHHHTC--CCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccCCHHHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCC----HHHHHHhCC--CCHHHHHHHHHHHHHHHHHhh
Confidence            4578999999999999999  69999999999999999999994    444455655  799999999999999886553

>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A

Probab=99.56  E-value=2.7e-15  Score=105.66  Aligned_cols=70  Identities=14%  Similarity=0.378  Sum_probs=59.8

Q ss_pred             cccccCCChhHHHHHHHhc--CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA  103 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeei--GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~  103 (144)
                      +..+..||+|||++||+.+  ||++|.+.|++|+|||+.|+.||.   +.++.+++   +|.|+.++++..+.++|-|
T Consensus        11 ~~~v~~WsvedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~---~dl~~~mg---iklGpalKi~~~I~~lk~~   82 (89)
T 1pk1_B           11 RSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNS---ERMMKYMG---LKLGPALKICNLVNKVNGR   82 (89)
T ss_dssp             CCCGGGCCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCH---HHHHHHSC---CCHHHHHHHHHHHHHHC--
T ss_pred             CCCchhCCHHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCH---HHHHHccC---CCccHHHHHHHHHHHHHcc
Confidence            4577899999999999999  899999999999999999999954   33555544   7999999999999998865

>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2

Probab=99.56  E-value=2e-15  Score=107.88  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=60.5

Q ss_pred             cccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHH--HhHhhhccchHHHHHHHHHHHHHHHh
Q 032278           28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRF--IRRCHMKWGDFITLCKELRRIKVACL  105 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~--i~r~~~k~gd~itl~~el~~~kv~~~  105 (144)
                      ..++..||+|||++||+++||++|.+.| .| |||+.|+.||    +.-|+.  +++  .+.||+..|..+|+++|-.+.
T Consensus        14 ~~~v~~Ws~edV~~WL~~~Gl~~Y~~~F-~~-IdG~~LL~Lt----~~dLk~~~LgI--~~~g~rkkl~~~I~~L~~~~~   85 (97)
T 2d8c_A           14 MKEVVYWSPKKVADWLLENAMPEYCEPL-EH-FTGQDLINLT----QEDFKKPPLYR--VSSDNGQRLLDMIETLKMEHH   85 (97)
T ss_dssp             CSCCSSCCTTHHHHHHHHTTCTTTTTTT-TT-CCHHHHHTCC----HHHHHSSSSSS--CSTTTTHHHHHHHHHHHHHSC
T ss_pred             CCchhhCCHHHHHHHHHHcCCHHHHHHH-Hc-CCCHHHhcCC----HHHHhhCCCCC--CCHHHHHHHHHHHHHHHHHhH
Confidence            5678999999999999999999999999 57 9999999994    444444  444  899999999999999996554


Q ss_pred             h
Q 032278          106 K  106 (144)
Q Consensus       106 ~  106 (144)
                      .
T Consensus        86 ~   86 (97)
T 2d8c_A           86 M   86 (97)
T ss_dssp             C
T ss_pred             H
Confidence            3

>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A

Probab=99.55  E-value=2.2e-15  Score=105.49  Aligned_cols=70  Identities=20%  Similarity=0.311  Sum_probs=58.6

Q ss_pred             cccccCCChhHHHHHHHhc-CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEI-NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA  103 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeei-GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~  103 (144)
                      +.++..||+|||+.||+.+ ||++|.+.|++|+|||+.|+.||..    -|  ...+-+|.|++.+++..|+++|-+
T Consensus        11 ~~~v~~Ws~edV~~wL~~l~gl~~y~~~F~~~~IdG~~LL~Lt~~----dL--~k~lgIklG~r~kI~~~I~~L~~~   81 (89)
T 1kw4_A           11 RPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEK----HL--VNAMGMKLGPALKIVAKVESIKEV   81 (89)
T ss_dssp             CCCGGGCCHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHH----HH--HTTTCCCHHHHHHHHHHHHHHC--
T ss_pred             CCCchhCCHHHHHHHHHHCcChHHHHHHHHHhCccHHHHhcCCHH----HH--HHHcCCCHHHHHHHHHHHHHHHHH
Confidence            3478999999999999999 9999999999999999999999543    22  134556999999999999998754

>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.36  E-value=2.8e-13  Score=95.69  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=60.0

Q ss_pred             cccccCCChhHHHHHHHhc--CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeei--GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      ..++..||++||++||+.+  |+++|  .|++|+|+|+.|++|+....+.    ++.  .+.||+-++...++.++-.+
T Consensus         8 ~~~v~~Wt~~~V~~WL~~l~~~l~~Y--~F~~~~I~G~~LL~Lt~~dL~~----LGI--~~~Ghr~~Il~~I~~L~~~~   78 (91)
T 1wwv_A            8 MEPVETWTPGKVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLEA----LAV--RSLGHQELILGGVEQLQALS   78 (91)
T ss_dssp             CCCTTTCCTTTHHHHHHHHCHHHHTS--CHHHHCCCHHHHTTCCTTTGGG----GTC--CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccCCHHHHHHHHHhcCCccccc--cHHhcCccHHHHhhCCHHHHHH----cCC--CcHhHHHHHHHHHHHHHHHh
Confidence            3478999999999999955  99999  7999999999999997776553    554  89999999999999998766

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}

Probab=99.34  E-value=2.9e-13  Score=96.07  Aligned_cols=83  Identities=20%  Similarity=0.268  Sum_probs=52.5

Q ss_pred             cccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhc---cCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLE---GMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi---~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      ..+...|++++|++||+.+||++|.+.|.+|+|+|.+++   .|    +++-|..|+.  .+.||+-++++.++.++   
T Consensus        14 ~~~~~~w~~~~V~~WL~~igL~qY~~~F~~~gid~~~~l~~~~l----t~~DL~~lGI--~~~GhRkkIl~ai~~L~---   84 (103)
T 2ke7_A           14 EMNGPRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVM----EDQDLLEIGI--LNSGHRQRILQAIQLLP---   84 (103)
T ss_dssp             ---------CCTTHHHHHTTCTTCHHHHHHTTCCCHHHHHTTCC----CHHHHHHHTC--CCHHHHHHHHHHHHHSC---
T ss_pred             cccccCCCHhHHHHHHHHCCCHHHHHHHHHcCCCcHHHHhcccC----CHHHHhHCCC--CCHHHHHHHHHHHHHHH---
Confidence            456689999999999999999999999999999999986   77    4455666776  88999999999998875   


Q ss_pred             hhCcccccCCCCCCcch
Q 032278          105 LKGEQKVRRPWWAPSCL  121 (144)
Q Consensus       105 ~~~~~~~~~~~w~p~~~  121 (144)
                        .-++...+-+.|+.+
T Consensus        85 --~~~~~~~~~~~P~~~   99 (103)
T 2ke7_A           85 --KMRPIGHDGYHPTSV   99 (103)
T ss_dssp             --C--------------
T ss_pred             --hcccccCCCCCCcCH
Confidence              223556677888654

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=4.5e-12  Score=87.39  Aligned_cols=81  Identities=23%  Similarity=0.233  Sum_probs=67.1

Q ss_pred             cccCCC-hhHHHHHHHhcCcchHHHHhhHcCcC-hhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhhC
Q 032278           30 ALTLLS-FQDVGLWLEEINLGGYRQIFKENGVN-GEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKG  107 (144)
Q Consensus        30 ~~~~WS-~EDVa~WLeeiGL~qYre~Fk~NnId-G~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~~  107 (144)
                      ++.+++ .++|++||+.+||++|.+.|.+|+|+ ++.|..|+.    +-|..|+.  .+.||+-++++.++.++...   
T Consensus         5 ~~p~~~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~----~dL~~lGI--~~~GhRkkIl~ai~~l~~~~---   75 (88)
T 2e8n_A            5 SSGEGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTN----DDVKRIGV--RLPGHQKRIAYSLLGLKDQV---   75 (88)
T ss_dssp             CCCCCCSCSSHHHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCT----THHHHTTC--CSHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCCCCchhhHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCH----HHHHHCCC--CChhHHHHHHHHHHHHHHhh---
Confidence            344554 58999999999999999999999999 899999944    44666666  78899999999999998664   


Q ss_pred             cccccCCCCCCcc
Q 032278          108 EQKVRRPWWAPSC  120 (144)
Q Consensus       108 ~~~~~~~~w~p~~  120 (144)
                       ..+..|.+.||.
T Consensus        76 -~~~~~p~~~~~~   87 (88)
T 2e8n_A           76 -NTVGIPISGPSS   87 (88)
T ss_dssp             -HCSSCCCCSSCC
T ss_pred             -cccCCCCCCCCC
Confidence             366789999974

>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A

Probab=99.22  E-value=6.1e-12  Score=90.56  Aligned_cols=59  Identities=24%  Similarity=0.290  Sum_probs=55.3

Q ss_pred             HHHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           38 DVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        38 DVa~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      +|++||+++|++||.+.|.+|+|+| +.|..|    +.++|.-|+.  .|.||+|++++.++.+|-
T Consensus        17 ~v~~wL~si~c~qY~~~F~eN~I~g~d~L~eL----d~e~LkElGI--~kvGdRirIlk~vk~Lr~   76 (85)
T 1ow5_A           17 FVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYL----DKDILIALGV--NKIGDRLKILRKSKSFQR   76 (85)
T ss_dssp             HHHHHHHHHSCTHHHHHHHHHTCCCHHHHHHC----CHHHHHHHTC--CCHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHcCChhHHHHHHHcCCCcHHHHHHc----CHHHHHHhCC--CcccHHHHHHHHHHHHHH
Confidence            8999999999999999999999999 999999    7888999998  999999999999888874

>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}

Probab=99.20  E-value=1.7e-12  Score=100.30  Aligned_cols=65  Identities=18%  Similarity=0.330  Sum_probs=48.2

Q ss_pred             cccccCCChhHHHHHHHh-cCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEE-INLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLC   94 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLee-iGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~   94 (144)
                      +..+.+||+|||++||+. .||+||+++|++|+|+|+.|++|+.--..-.+..+++  ..-+|+-++.
T Consensus        75 ~s~V~nWTvedV~~WL~~~v~LpqY~~~Fr~~~IdG~~LprL~~~~~~~L~~~LGI--~~~~hR~Kl~  140 (150)
T 2l5y_A           75 TSEVHNWTLEDTLQWLIEFVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKI--SDRSHRQKLQ  140 (150)
T ss_dssp             TSHHHHCCHHHHHHHHHHHTCCTTSHHHHHHHHCSSSTTTTCCSSSCCSTTTTSSC--CCHHHHHHHH
T ss_pred             cCcchhCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHhhhhhhcchHHHHHHhCC--CCHHHHHHHH
Confidence            456789999999999988 4999999999999999999999987432222333333  3444444443

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}

Probab=99.19  E-value=2.3e-11  Score=83.67  Aligned_cols=67  Identities=24%  Similarity=0.225  Sum_probs=53.3

Q ss_pred             cccCCChhHHHHHHHhcCcchHHHHhhHcCcC-hhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           30 ALTLLSFQDVGLWLEEINLGGYRQIFKENGVN-GEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        30 ~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnId-G~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      .+..|+.++|++||+.+||++|.+.|.+|+|+ ++.|..|    +++-|..|+.  .+.|++-++++.++.++-
T Consensus        10 ~~~~~~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~l----t~~DL~~lGI--~~~GhRkkIl~ai~~Lr~   77 (82)
T 2kso_A           10 LVPRGSHMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQM----TNDDIKRIGV--RLPGHQKRIAYSLLGLKD   77 (82)
T ss_dssp             --------CHHHHHHHTTCTTHHHHHHHTTCCSHHHHTTC----CHHHHHHHHC--CCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCCcchHHHHHHHCCCHHHHHHHHHcCCChHHHHHhC----CHHHHHHCCC--CChhHHHHHHHHHHHHHH
Confidence            35668999999999999999999999999999 9999999    4555677776  889999999999998874

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=99.14  E-value=2.9e-11  Score=99.83  Aligned_cols=71  Identities=18%  Similarity=0.149  Sum_probs=59.3

Q ss_pred             CcccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           27 MPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        27 ~~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      ....+.+|+.|+|++||+++||++|++.|++|.+||..|.+||   .+.+-+-|+.  .+=||+-+|.-+|+.++-
T Consensus        11 ~~~p~~~W~~e~V~~WLe~~GL~~Y~~~f~~n~~dG~~Ll~lt---~~dLe~eLGI--~nplHRkKL~laI~el~~   81 (265)
T 3tad_C           11 LDMPFAKWTKEQVCSWLAEQGLGSYLSSGKHWIISGQTLLQAS---QQDLEKELGI--KHSLHRKKLQLALQALGS   81 (265)
T ss_dssp             ---CGGGSCHHHHHHHHHHTTCCTTHHHHTTTCSCSHHHHHSC---HHHHHHHTCC--CSHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhCChHHHHHHHHHHCHHHHHHHHHHhCCchHHHHhCC---HHHHHHHhCC--CCHHHHHHHHHHHHHhcc
Confidence            4568999999999999999999999999999999999999884   4444456776  778899999888888874

>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=1.8e-11  Score=82.77  Aligned_cols=64  Identities=23%  Similarity=0.272  Sum_probs=53.6

Q ss_pred             cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhc---cCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLE---GMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi---~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      ..++.++|++||+.+||++|.+.|.+|+|+|.+++   .||..    -|..|+.  .+.||+-++++.++.++
T Consensus         8 ~~~~~~~V~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~----dL~~lGI--~~~ghR~kIl~ai~~L~   74 (80)
T 2eam_A            8 PRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQ----DLLEIGI--LNSGHRQRILQAIQLLP   74 (80)
T ss_dssp             CCCCCCCHHHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTT----HHHHSSC--CCHHHHHHHHHHHHHSC
T ss_pred             CCCChhHHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHH----HHHHCCC--CCHHHHHHHHHHHHHHh
Confidence            34778999999999999999999999999999886   67433    3455665  78999999999998876

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}

Probab=99.12  E-value=4e-11  Score=85.71  Aligned_cols=66  Identities=17%  Similarity=0.304  Sum_probs=57.3

Q ss_pred             ccCCChhHHHHHHHhcCcchHHHHhhHcCcC-hhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           31 LTLLSFQDVGLWLEEINLGGYRQIFKENGVN-GEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        31 ~~~WS~EDVa~WLeeiGL~qYre~Fk~NnId-G~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      ...++.++|++||+.+||++|.+.|.+|+|+ |+.|..|    +++-|.-|+.  .+.||+-++++.++.++.
T Consensus        21 m~~~~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~L----t~eDLkeLGI--t~~GhRkkIL~aI~~Lr~   87 (100)
T 2kg5_A           21 MAAPQDLDIAVWLATVHLEQYADTFRRHGLATAGAARGL----GHEELKQLGI--SATGHRKRILRLLQTGTE   87 (100)
T ss_dssp             CSCCTTCBHHHHHGGGTCGGGHHHHHHTTCCBHHHHTTC----CHHHHHHHTC--CCHHHHHHHHHHHTTTTT
T ss_pred             cCCCCcChHHHHHHHCCCHHHHHHHHHcCCChHHHHHhc----CHHHHHHCCC--CChhHHHHHHHHHHHHHh
Confidence            4567889999999999999999999999999 9999999    4455666776  789999999999988773

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}

Probab=99.10  E-value=4.8e-11  Score=81.11  Aligned_cols=67  Identities=24%  Similarity=0.347  Sum_probs=52.7

Q ss_pred             ccCCC-hhHHHHHHHhcCcchHHHHhhHcC-cChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHH
Q 032278           31 LTLLS-FQDVGLWLEEINLGGYRQIFKENG-VNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA  103 (144)
Q Consensus        31 ~~~WS-~EDVa~WLeeiGL~qYre~Fk~Nn-IdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~  103 (144)
                      +.+|+ .++|++||+.+||++|.+.|.+|+ |+|+.|..|    +++-|.-|+.  .+.||+-++++.++.+|-.
T Consensus         9 ~p~~~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~l----t~~dL~~lGI--~~~GhrkkIl~ai~~l~~~   77 (83)
T 2qkq_A            9 QPHYSAFGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQI----SAEDLLRIGV--TLAGHQKKILASVQHMKSQ   77 (83)
T ss_dssp             -----CCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTC----CHHHHHHHTC--CCHHHHHHHHHHHTTC---
T ss_pred             CCCCCccchHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhC----CHHHHHHCCC--CCHHHHHHHHHHHHHHHHH
Confidence            34554 689999999999999999999999 999999999    5555566666  7799999999999887744

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.09  E-value=9.4e-11  Score=79.72  Aligned_cols=64  Identities=23%  Similarity=0.348  Sum_probs=55.0

Q ss_pred             ChhHHHHHHHhcCcchHHHHhhHcCcC-hhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHH
Q 032278           35 SFQDVGLWLEEINLGGYRQIFKENGVN-GEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        35 S~EDVa~WLeeiGL~qYre~Fk~NnId-G~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      +.++|++||+.+||++|.+.|.+|+|+ ++.|..|    +++-|.-|+.  .+.||+-++++.++.++-..
T Consensus         6 ~~~~V~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~l----t~~DL~~lGI--~~~GhrkkIl~ai~~l~~~~   70 (81)
T 1ucv_A            6 SGLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRM----NAQDVRALGI--TLMGHQKKILGSIQTMRAQL   70 (81)
T ss_dssp             CCSBHHHHHHHTTCGGGHHHHHHTTCCBHHHHTTC----CHHHHHHHTC--CCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHCCCHHHHHHHHHcCCChHHHHHHc----CHHHHHhCCC--CChhHHHHHHHHHHHHHHHH
Confidence            367999999999999999999999999 7899998    4555566666  78899999999999988654

>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B

Probab=99.08  E-value=4.6e-11  Score=83.72  Aligned_cols=68  Identities=24%  Similarity=0.257  Sum_probs=56.1

Q ss_pred             cccccCCChhHHHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      +.....|++++|++||+.+||++|.+.|.+|+|++ +.|..|    +++-|..|+.  .+.|++-++++.++.+|
T Consensus        18 ~~~~~~~~~~~V~eWL~~lgL~qY~~~F~~~g~~~le~l~~l----t~~DL~~lGI--t~~GHRkkIL~aI~~LK   86 (86)
T 2k4p_A           18 GSHMSGLGEAGMSAWLRAIGLERYEEGLVHNGWDDLEFLSDI----TEEDLEEAGV--QDPAHKRLLLDTLQLSK   86 (86)
T ss_dssp             ----CCCCSCSSHHHHHTTTCGGGHHHHHTTTCCCHHHHTTC----CHHHHHHTTC--CCHHHHHHHHHHHHHCC
T ss_pred             CCcCCCCCcCcHHHHHHHCCCHHHHHHHHHcCCChHHHHHhC----CHHHHHHCCC--CCHHHHHHHHHHHHHcC
Confidence            44567899999999999999999999999999975 777777    5555677776  78999999999988876

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A

Probab=99.08  E-value=1.1e-10  Score=78.98  Aligned_cols=67  Identities=19%  Similarity=0.331  Sum_probs=56.7

Q ss_pred             cCC-ChhHHHHHHHhcCcchHHHHhhHcCc-ChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHH
Q 032278           32 TLL-SFQDVGLWLEEINLGGYRQIFKENGV-NGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        32 ~~W-S~EDVa~WLeeiGL~qYre~Fk~NnI-dG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      .+| +.++|++||+.+||++|.+.|.+|+| +++.|..|    +++-|..|+.  .+.||+-++++.++.++-..
T Consensus         6 p~~~~~~~v~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~l----t~~dL~~lGI--~~~GhrkkIl~ai~~l~~~~   74 (82)
T 1b4f_A            6 PDYTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQM----MMEDILRVGV--TLAGHQKKILNSIQVMRAQM   74 (82)
T ss_dssp             CCCCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTC----CHHHHHHTTC--CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccHHHHHHHHCCCHHHHHHHHHcCCCCHHHHHhC----CHHHHHHcCC--CCHHHHHHHHHHHHHHHHHH
Confidence            344 46799999999999999999999999 78999999    5555666776  78899999999999988544

>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=8.7e-11  Score=83.56  Aligned_cols=68  Identities=16%  Similarity=0.172  Sum_probs=57.7

Q ss_pred             cccccCCChhHHHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      +.....|+.++|++||+.+||+||.+.|.+|++++ +.|.+|    +++-|..|+.  .+-||+-+++..++.++
T Consensus        15 ~~p~~~~~~~sV~eWL~~igL~qY~~~F~~~g~d~le~l~~l----t~~DL~~lGI--t~~gHrkkIl~ai~~lr   83 (97)
T 2dl0_A           15 RKPVSPGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSL----SHTCLQEAGI--TEERHIRKLLSAARLFK   83 (97)
T ss_dssp             CCCCCCSCCCSHHHHHHHHTCGGGHHHHHHHTCCSTTSGGGC----CHHHHHHHTC--CCHHHHHHHHHHHHTCC
T ss_pred             cCCCCccccCcHHHHHHHCCCHHHHHHHHHcCCCcHHHHHhc----CHHHHHHCCC--CCHHHHHHHHHHHHHHH
Confidence            44567799999999999999999999999999998 678887    4555666766  78899999998888765

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.2e-10  Score=81.96  Aligned_cols=65  Identities=23%  Similarity=0.321  Sum_probs=56.4

Q ss_pred             CChhHHHHHHHhcCcchHHHHhhHcCcC-hhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHH
Q 032278           34 LSFQDVGLWLEEINLGGYRQIFKENGVN-GEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        34 WS~EDVa~WLeeiGL~qYre~Fk~NnId-G~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      -+.++|++||+.+||++|.+.|.+|+|+ ++.|..|    +++-|..|+.  .+.||+-++++.++.++-..
T Consensus        20 ~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~l----t~~DL~~lGI--~~~GhRkkIl~ai~~l~~~~   85 (99)
T 2eao_A           20 TAFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQM----TSEDLLRIGI--TLAGHQKKILNSIHSMRVQI   85 (99)
T ss_dssp             TSCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTC----CHHHHHHHTC--CCHHHHHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHCCcHHHHHHHHHcCCChHHHHhhC----CHHHHHHCCC--CChhHHHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999 8999999    4555666776  78999999999999988554

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}

Probab=99.03  E-value=2e-10  Score=80.74  Aligned_cols=65  Identities=20%  Similarity=0.357  Sum_probs=56.0

Q ss_pred             cCCChhHHHHHHHhcCcchHHHHhhHcCcC-hhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           32 TLLSFQDVGLWLEEINLGGYRQIFKENGVN-GEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnId-G~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      .-+++++|++||+.+||++|.+.|.+|+|+ ++.|..||    ++-|.-|+.  .+.|++-++++.++.++-
T Consensus        21 ~~~~~~~V~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt----~~DL~~lGI--t~~GHRkkIL~ai~~Lr~   86 (90)
T 3h8m_A           21 DFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMT----IEDVMSLGI--TLVGHQKKIMSSIQTMRA   86 (90)
T ss_dssp             CCCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCC----HHHHHHTTC--CCHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHCChHHHHHHHHHcCCChHHHHhhCC----HHHHHHCCC--CCHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999 88888883    444566666  889999999999998864

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2

Probab=99.03  E-value=2.5e-10  Score=79.60  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=54.9

Q ss_pred             CChhHHHHHHHhcCcchHHHHhhHcCc-ChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHH
Q 032278           34 LSFQDVGLWLEEINLGGYRQIFKENGV-NGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA  103 (144)
Q Consensus        34 WS~EDVa~WLeeiGL~qYre~Fk~NnI-dG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~  103 (144)
                      -+.++|++||+.+||++|.+.|.+|+| +++.|..|    +++-|.-|+.  .+.||+-++++.++.++-.
T Consensus        24 ~~~~~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l----t~~DL~~lGI--~~~GhrkkIl~ai~~L~~~   88 (94)
T 1b0x_A           24 SAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHM----SQDDLARIGI--TAITHQNKILSSVQAMRTQ   88 (94)
T ss_dssp             CSSCCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTC----CHHHHHHHTC--CCHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHCCcHHHHHHHHHcCCCCHHHHhhC----CHHHHHHCCC--CChhHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999 78889998    4444666776  7889999999999988743

>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}

Probab=99.01  E-value=6.9e-11  Score=91.43  Aligned_cols=45  Identities=16%  Similarity=0.341  Sum_probs=40.5

Q ss_pred             cccccCCChhHHHHHHHhc-CcchHHHHhhHcCcChhhhccCcccc
Q 032278           28 PHALTLLSFQDVGLWLEEI-NLGGYRQIFKENGVNGEYLEGMSMFT   72 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeei-GL~qYre~Fk~NnIdG~eLi~Ltk~T   72 (144)
                      +..+.+||+|||.+||+.. ||+||.++|++|+|+|+.|+.|+...
T Consensus        75 ~s~V~nWTvedV~~WL~~~v~LpqY~~~Fr~~~I~G~~LprLa~~~  120 (150)
T 2k60_A           75 SSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTN  120 (150)
T ss_dssp             HSHHHHCCHHHHHHHHHHHHCCTTHHHHHHHHCCSTTHHHHHSSCH
T ss_pred             cCccccCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHHHhhcccc
Confidence            4457899999999999666 99999999999999999999998863

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=98.95  E-value=5.3e-10  Score=82.87  Aligned_cols=62  Identities=27%  Similarity=0.341  Sum_probs=51.8

Q ss_pred             ChhHHHHHHHhcCcchHHHHhhHcCcChhhhc---cCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLE---GMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        35 S~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi---~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      +.++|++||+.+||++|.+.|.+|++||.++.   .|    +++-|..|+.  .+.|++-++..+++.++.
T Consensus        13 ~~~~V~~WL~~igL~~Y~~~F~~~g~d~~~~l~~~~l----t~~DL~~lGI--~~~ghRkkil~ai~~L~~   77 (148)
T 2kiv_A           13 SVQTVGQWLESIGLPQYENHLMANGFDNVQAMGSNVM----EDQDLLEIGI--LNSGHRQRILQAIQLLPK   77 (148)
T ss_dssp             -CCBHHHHHHHHSCTTSHHHHHHTTTTBGGGGTSSCC----CHHHHHHHCC--SSTTSHHHHHHHHHHCSC
T ss_pred             CcchHHHHHHHCCCHHHHHHHHHcCCCHHHHhhhccC----CHHHHHHCCC--CCHHHHHHHHHHHHHHHH
Confidence            56799999999999999999999999998776   56    3444556776  789999999999988764

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0

Probab=98.95  E-value=4.7e-10  Score=78.30  Aligned_cols=64  Identities=25%  Similarity=0.308  Sum_probs=50.7

Q ss_pred             cCCChhHHHHHHHhcCcchHHHHhhHcCcC-hhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           32 TLLSFQDVGLWLEEINLGGYRQIFKENGVN-GEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnId-G~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      .--+.++|++||+.+||++|.+.|.+|+|+ .+.|..|    +++-|..|+.  .+.|++-++++.++.++
T Consensus        17 d~~~~~~V~~WL~~lgL~qY~~~F~~~g~d~le~l~~l----t~~DL~~LGI--t~~GHRkkIL~ai~~Lr   81 (86)
T 3kka_C           17 QGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQM----TNDDIKRIGV--RLPGHQKRIAYSLLGLK   81 (86)
T ss_dssp             ------CHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTC----CHHHHHHTTC--CCHHHHHHHHHHHHHCC
T ss_pred             cccchhHHHHHHHhCCcHHHHHHHHHcCCChHHHHHhC----CHHHHHHCCC--CCHHHHHHHHHHHHHHH
Confidence            344678999999999999999999999999 5778888    4555666766  88999999999998875

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A

Probab=98.93  E-value=8.4e-10  Score=76.43  Aligned_cols=60  Identities=18%  Similarity=0.303  Sum_probs=51.5

Q ss_pred             CChhHHHHHHHhcCcchHHHHhhHcCcC-hhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHH
Q 032278           34 LSFQDVGLWLEEINLGGYRQIFKENGVN-GEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRR   99 (144)
Q Consensus        34 WS~EDVa~WLeeiGL~qYre~Fk~NnId-G~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~   99 (144)
                      -+.++|++||+.+||++|.+.|.+|+|+ ++.|..||    ++-|.-|+.  .+.|++-++++.++.
T Consensus        21 ~~~~~V~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt----~~DL~~lGI--t~~GHRkkIL~aiq~   81 (82)
T 3hil_A           21 IPYRTVSEWLESIRMKRYILHFHSAGLDTMECVLELT----AEDLTQMGI--TLPGHQKRILCSIQG   81 (82)
T ss_dssp             CCCSSHHHHHHHTTCGGGHHHHHHTTCCSGGGGTTCC----HHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHhCCHHHHHHHHHHcCCChHHHHhcCC----HHHHHHCCC--CCHHHHHHHHHHHHh
Confidence            4678999999999999999999999999 88898884    444566666  889999999988875

>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=98.90  E-value=1.5e-09  Score=75.58  Aligned_cols=62  Identities=24%  Similarity=0.250  Sum_probs=52.1

Q ss_pred             hhHHHHHHHhcCcchHHHHhhHcCcC-hhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHH
Q 032278           36 FQDVGLWLEEINLGGYRQIFKENGVN-GEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA  103 (144)
Q Consensus        36 ~EDVa~WLeeiGL~qYre~Fk~NnId-G~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~  103 (144)
                      ..+|++||+.+||++|.+.|.+|+|+ .+.|.+|    +++-|..|+.  .+.||+-++++.++.++--
T Consensus        15 ~~~V~~WL~~lgL~qY~~~F~~~g~~~~~~l~~l----t~~DL~~lGI--~~~GHrkkIl~ai~~L~~~   77 (91)
T 1x40_A           15 NVDIKDFLMSINLEQYLLHFHESGFTTVKDCAAI----NDSLLQKIGI--SPTGHRRRILKQLQIILSK   77 (91)
T ss_dssp             CCBHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGC----CHHHHHHHTC--CCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhc----CHHHHHHCCC--CCHhHHHHHHHHHHHHHhh
Confidence            46899999999999999999999997 5778888    4444666666  7899999999999988743

>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}

Probab=98.86  E-value=1.1e-09  Score=78.67  Aligned_cols=64  Identities=31%  Similarity=0.285  Sum_probs=53.2

Q ss_pred             CCChhHHHHHHHhcCcchHHHHhhHcCcChhhhcc---CcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           33 LLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEG---MSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        33 ~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~---Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      .-.+.+|++||+.+||++|.+.|.+|+|+|.+++.   |    +++-|..|+.  .+.|++-+++..++.++.
T Consensus        26 ~~~~~~V~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~L----t~eDL~eLGI--t~~GHRkkIL~aI~~L~~   92 (101)
T 2lmr_A           26 RTLEQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVM----EEQDLRDIGI--SDPQHRRKLLQAARSLPK   92 (101)
T ss_dssp             CCSSCCHHHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCC----CHHHHHHHTC--CCHHHHHHHHHHHHTSSS
T ss_pred             CCCcccHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccC----CHHHHHHCCC--CCHHHHHHHHHHHHHHHh
Confidence            34566999999999999999999999999987664   6    4555777777  889999999998887653

>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=1.3e-09  Score=78.40  Aligned_cols=48  Identities=31%  Similarity=0.397  Sum_probs=42.3

Q ss_pred             CcccccCCChhHHHHHHHhcCcchH-HHHhhHcCcChhhhccCcccchHHHHH
Q 032278           27 MPHALTLLSFQDVGLWLEEINLGGY-RQIFKENGVNGEYLEGMSMFTTEQILR   78 (144)
Q Consensus        27 ~~l~~~~WS~EDVa~WLeeiGL~qY-re~Fk~NnIdG~eLi~Ltk~T~e~il~   78 (144)
                      ++.+.+.||++||++||+-+||++| .+.|++|.|||.-|..|    +|.||.
T Consensus        11 pP~dLs~lSv~EVs~~Lr~igL~e~vv~~F~~e~IDG~lL~~L----~ee~L~   59 (84)
T 2dkz_A           11 PPADLSGLSIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQL----TEEILS   59 (84)
T ss_dssp             CCSCCSSCCHHHHHHHGGGTCCCHHHHHHHHTTTCCHHHHHHC----CHHHHH
T ss_pred             CchhhhhcCHHHHHHHHHHcCCcHHHHHHHHHHccchHHHHhC----CHHHHH
Confidence            3456699999999999999999985 69999999999999999    666664

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=98.83  E-value=1.6e-09  Score=81.02  Aligned_cols=63  Identities=22%  Similarity=0.281  Sum_probs=53.5

Q ss_pred             ChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHH
Q 032278           35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA  103 (144)
Q Consensus        35 S~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~  103 (144)
                      +.++|++||+.+||++|.+.|.+|++||+.|..||    ++=|..|+.  +..||+-++...++.++..
T Consensus         9 ~~~~V~~WL~~lgL~~Y~~~F~~~g~d~~~l~~lt----~~DL~~lGI--t~~gHrkkil~ai~~L~~~   71 (149)
T 3sei_A            9 SSEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMT----PEDLTAIGV--TKPGHRKKIAAEISGLSIP   71 (149)
T ss_dssp             HHHHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCC----HHHHHHTTC--CSHHHHHHHHHHHHTCCCC
T ss_pred             cHHHHHHHHHHCCcHHHHHHHHHcCCCHHHHccCC----HHHHHHcCC--CCHHHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999998884    333455665  7789999999999887654

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}

Probab=98.81  E-value=5.1e-09  Score=71.02  Aligned_cols=63  Identities=17%  Similarity=0.229  Sum_probs=53.2

Q ss_pred             hHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhh
Q 032278           37 QDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLK  106 (144)
Q Consensus        37 EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~  106 (144)
                      ..|++||+.+||++|.+.|.+|+||+..|..||    ++-|.-|+.   ..|++.+++.-++..|-....
T Consensus         3 ~~v~~wL~~lgL~~Y~~~F~~~~id~e~l~~lt----~~DL~~lGI---~~G~RkkIl~ai~~~~~~~~~   65 (74)
T 3k1r_B            3 SPLETFLASLHMEDFAALLRQEKIDLEALMLCS----DLDLRSISV---PLGPREKILGAVRRRRQAMER   65 (74)
T ss_dssp             CHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCC----HHHHHHTTC---CHHHHHHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHCCCHHHHHHHHHcCcCHHHHhHCC----HHHHHHcCC---CcchHHHHHHHHHHHHHHhcC
Confidence            469999999999999999999999999999994    444555554   499999999999999876544

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=98.77  E-value=9.7e-09  Score=76.82  Aligned_cols=64  Identities=20%  Similarity=0.359  Sum_probs=52.3

Q ss_pred             cCCChhHHHHHHHhcCcchHHHHhhHcCcC-hhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           32 TLLSFQDVGLWLEEINLGGYRQIFKENGVN-GEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnId-G~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      ..-.+.+|++||+.+||++|.+.|.+|+|+ ++.|.+||    ++-|..|+.  .+.||+-+++.-++.++
T Consensus        75 ~~~~p~~v~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt----~~dL~~lGI--~~~gHr~kIl~ai~~l~  139 (149)
T 3sei_A           75 PEHKPANLAVWLSMIGLAQYYKVLVDNGYENIDFITDIT----WEDLQEIGI--TKLGHQKKLMLAVRKLA  139 (149)
T ss_dssp             CSSCCSCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCC----HHHHHHHTC--CCHHHHHHHHHHHHHHH
T ss_pred             CCCCcccHHHHHHHcCchhhHHHHHHCCCchHHHHhhCC----HHHHHHCCC--CCHHHHHHHHHHHHHHH
Confidence            344567999999999999999999999999 78888884    444566665  78999998887777665

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2

Probab=98.75  E-value=1.2e-08  Score=69.33  Aligned_cols=64  Identities=20%  Similarity=0.154  Sum_probs=52.1

Q ss_pred             cCCChhHHHHHHHhcCcchHHHHhhHcCcChhh-hccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEY-LEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~e-Li~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      ....+++|++||+.+||++|.+.|.+|++++-+ +..|    +++-|..|+.  .+-||+-+++..++.++
T Consensus         8 ~~~~~~~V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~l----t~~DL~~lGI--~~~ghrkkil~ai~~L~   72 (78)
T 1v38_A            8 RRENHQTIQEFLERIHLQEYTSTLLLNGYETLDDLKDI----KESHLIELNI--ADPEDRARLLSAAESLL   72 (78)
T ss_dssp             CCSSCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTC----CHHHHHHTTT--CCHHHHHHHHHHHHHHH
T ss_pred             CCCCcCcHHHHHHHCCCHHHHHHHHHcCCCCHHHHhhc----CHHHHHHcCC--CCHHHHHHHHHHHHHHH
Confidence            445788999999999999999999999998754 4444    4555666776  78899999999888765

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=98.68  E-value=3.7e-08  Score=81.35  Aligned_cols=69  Identities=22%  Similarity=0.400  Sum_probs=56.8

Q ss_pred             ccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHH
Q 032278           29 HALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA  103 (144)
Q Consensus        29 l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~  103 (144)
                      ..+..+....|++||+.|||+||++.|.+|.|||+-|.+||...    |+.|+.  .+-||+-++...++.+|-.
T Consensus        85 ~~~~~~d~~wv~~WL~~IGL~QY~~~F~~~~iDg~~L~~LT~~D----L~~LGI--t~~~HR~kil~aI~~L~~~  153 (265)
T 3tad_C           85 TNYGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDD----LLSLKV--VSVLHHLSIKRAIQVLRIN  153 (265)
T ss_dssp             CSGGGCCHHHHHHHHHHHTCGGGHHHHHHHTCCHHHHHTCBHHH----HHHTTC--CBHHHHHHHHHHHHHHHHT
T ss_pred             ccccccChHHHHHHHHHcCcHHHHHHHHHcCCCHHHhcccCHHH----HHHcCC--CcHHhHHHHHHHHHHHhhc
Confidence            34678888999999999999999999999999999999995443    345555  7789999998777777654

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A

Probab=98.62  E-value=3e-08  Score=84.98  Aligned_cols=66  Identities=20%  Similarity=0.204  Sum_probs=52.9

Q ss_pred             cccccCCChhHHHHHHHh-cCcch-HHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHH---HHHHH
Q 032278           28 PHALTLLSFQDVGLWLEE-INLGG-YRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITL---CKELR   98 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLee-iGL~q-Yre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl---~~el~   98 (144)
                      ...|.+|+.++|++||++ +||++ |+..|++|.++|..|.+||   ++.|-+-|+.  .+=+|+-+|   ++|++
T Consensus        33 ~~Pfs~W~~~~V~aWLe~~iGmp~~Yv~~~r~nvkSG~~Ll~LS---d~dLekeLGI--~nPLHRKKL~LAIqel~  103 (334)
T 3tac_B           33 GLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALS---DTEIQREIGI--SNPLHRLKLRLAIQEMV  103 (334)
T ss_dssp             TCCGGGCCHHHHHHHHHHTTCCCHHHHHHHHHHCCSHHHHHTCC---HHHHHHTTCC--CCHHHHHHHHHHHHHHH
T ss_pred             CCChhhCCcHHHHHHHHHHhcChHHHHHHHHHHccchHHHHhCC---HHHHHHHhCC--CCHHHHHHHHHHHHHHH
Confidence            467999999999999999 89998 9999999999999998874   5555556666  445666666   45554

>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A

Probab=98.50  E-value=1.4e-07  Score=67.94  Aligned_cols=68  Identities=16%  Similarity=0.345  Sum_probs=56.1

Q ss_pred             cccccCCChhHHHHHH-HhcCcch---HHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWL-EEINLGG---YRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WL-eeiGL~q---Yre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      ...+..||+++|+.|. .+.||++   ..+-|++|+|+|.-|+.|+.+...+    +  |+-.+|-++.|-..|.+++
T Consensus         6 ~~~v~~Wt~~~V~~W~~~~lg~~d~d~~~~~f~~ndItG~vL~eL~leDlKE----L--~i~s~~~r~~lk~~In~Lr   77 (85)
T 1uqv_A            6 NEDFSQWSVDDVITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQD----L--CDGDLNKAIKFKILINKMR   77 (85)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHSSCTTSTHHHHHHHSCCCGGGHHHHHHHHHHH----T--SSSCHHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHHHhCCCCccHHHHHHHHcCCchhhHHHcCHHHHHH----h--CchHHHHHHHHHHHHHHHH
Confidence            3468999999999999 7889998   6889999999999999995433332    2  4588888999988888887

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=98.46  E-value=1.3e-07  Score=70.08  Aligned_cols=62  Identities=21%  Similarity=0.365  Sum_probs=49.0

Q ss_pred             cCCChhHHHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHH
Q 032278           32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELR   98 (144)
Q Consensus        32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~   98 (144)
                      ...++++|++||+.+||++|.+.|.+|+++| +.|..|   |.++++..++.  .+-||+-+++.-++
T Consensus        84 d~~~~~~v~~WL~~i~L~qY~~~F~~~g~~~~~~l~~l---t~~dLl~~lGI--~~~gHrkrIl~ai~  146 (148)
T 2kiv_A           84 DGAHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKI---AEVELINVLKI--NLIGHRKRILASLG  146 (148)
T ss_dssp             CCCCCSSHHHHHHTTTCCTHHHHHHHHTCCSHHHHTSC---CHHHHHHHTCC--CCHHHHHHHHHHHT
T ss_pred             CCCCcchHHHHHHHCCcHHHHHHHHHcCCChHHHHHhC---CHHHHHHhCCC--CChhHHHHHHHHHh
Confidence            3467789999999999999999999999998 667777   34555566666  67888887765443

>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=2.6e-07  Score=67.26  Aligned_cols=43  Identities=5%  Similarity=0.091  Sum_probs=37.5

Q ss_pred             CCcccccCCChhHHHHHHHhcCcchHHHHhh-HcCcChhhhccCc
Q 032278           26 DMPHALTLLSFQDVGLWLEEINLGGYRQIFK-ENGVNGEYLEGMS   69 (144)
Q Consensus        26 ~~~l~~~~WS~EDVa~WLeeiGL~qYre~Fk-~NnIdG~eLi~Lt   69 (144)
                      +....+..||+++|++||++.||.+ .+.|- .++|||..|++||
T Consensus        14 ps~seV~~Wsp~~VadWLkk~g~~~-cd~lv~Kh~IDG~~lL~Lt   57 (90)
T 2eap_A           14 PFRSEVLGWDPDSLADYFKKLNYKD-CEKAVKKYHIDGARFLNLT   57 (90)
T ss_dssp             CCHHHHTTCCTTTHHHHHHHTTCHH-HHHHHHHTTCCHHHHHTCC
T ss_pred             ccCccccccCHHHHHHHHHHcCCch-HHHHHHHhccCchhhhccc
Confidence            4456789999999999999999999 66664 8889999999995

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A

Probab=97.91  E-value=8.6e-06  Score=69.89  Aligned_cols=45  Identities=24%  Similarity=0.387  Sum_probs=37.7

Q ss_pred             cccCCChhHHH-HHHHhcCcchHHHHhhHcCcChhhhccCcccchH
Q 032278           30 ALTLLSFQDVG-LWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTE   74 (144)
Q Consensus        30 ~~~~WS~EDVa-~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e   74 (144)
                      .+.+...+=|+ .||+.|||+||++.|.+|.|||+-|..||+...+
T Consensus       156 ~~g~ldh~WV~~~WL~dIGLpQY~~~F~~~~VDgR~L~~Lt~~DL~  201 (334)
T 3tac_B          156 AYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLR  201 (334)
T ss_dssp             ---CCCHHHHHHTHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHH
T ss_pred             hcccCccCcchhhhccccChHHhHHHHHhcCcchhhhhhccHHHHH
Confidence            45667778899 7999999999999999999999999999766653

>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}

Probab=97.91  E-value=6.6e-06  Score=58.37  Aligned_cols=67  Identities=22%  Similarity=0.182  Sum_probs=49.6

Q ss_pred             cccccCCChhHHHHHHHhcCcchHH---HHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEINLGGYR---QIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeeiGL~qYr---e~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      +.+...||.+||..||...+ .+|.   --|...+|||+.|..||++.      |..|.- ..||.  |..-|+.+|--+
T Consensus         9 ~~DP~~WS~~~V~~WL~w~~-~ef~L~~i~~~~f~mdGk~Lc~Lt~ed------F~~~~p-~~Gdi--L~~hL~~Lk~~~   78 (93)
T 2qar_B            9 RLQPIYWSRDDVAQWLKWAE-NEFSLSPIDSNTFEMNGKALLLLTKED------FRYRSP-HSGDV--LYELLQHILKQR   78 (93)
T ss_dssp             CSCGGGCCHHHHHHHHHHHH-HHTTCCCCCGGGGCSCHHHHTTCCHHH------HHHHCT-TTHHH--HHHHHHHHHHHH
T ss_pred             CCChhhCCHHHHHHHHHHHH-HhcCCCCcchhcCCCCHHHHHcCCHHH------HhhhCC-cchHH--HHHHHHHHHHhc
Confidence            56788999999999998777 7776   22556689999999997643      333332 25886  788888887544

>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1

Probab=97.70  E-value=2.4e-05  Score=53.89  Aligned_cols=68  Identities=24%  Similarity=0.287  Sum_probs=47.2

Q ss_pred             CCcccccCCChhHHHHHHHhcCcchHH-H----HhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHH-H
Q 032278           26 DMPHALTLLSFQDVGLWLEEINLGGYR-Q----IFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELR-R   99 (144)
Q Consensus        26 ~~~l~~~~WS~EDVa~WLeeiGL~qYr-e----~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~-~   99 (144)
                      ..+.+...||++||..||.-. ..+|. +    -|...++||++|-.||++.      |.+|+- .-||.  |-..|+ +
T Consensus         6 ~i~~dP~~Ws~~~V~~WL~w~-~~e~~l~l~~~~~~~f~m~G~~Lc~ls~ed------F~~~~p-~~Gdi--L~~hL~~~   75 (82)
T 1sv0_C            6 GLPLDPRDWTRADVWKWLINM-AVSEGLEVTAELPQKFPMNGKALCLMSLDM------YLCRVP-VGGKM--LYRDFRVR   75 (82)
T ss_dssp             SSBSSGGGCCHHHHHHHHHHH-HHHHTCCCCTHHHHTCCSCHHHHHHCCHHH------HHHHCT-TTHHH--HHHHHHHH
T ss_pred             cCCCChhhCCHHHHHHHHHHH-HHHhCCCCCCCccccCCCCHHHHHhCCHHH------HHhhCC-CchHH--HHHHHHHH
Confidence            446778899999999999644 44431 1    1445579999999997653      666655 67887  667777 4


Q ss_pred             HHHH
Q 032278          100 IKVA  103 (144)
Q Consensus       100 ~kv~  103 (144)
                      |+-|
T Consensus        76 l~~~   79 (82)
T 1sv0_C           76 LARA   79 (82)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A

Probab=97.54  E-value=0.00011  Score=52.55  Aligned_cols=63  Identities=14%  Similarity=0.167  Sum_probs=51.0

Q ss_pred             hHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhhC
Q 032278           37 QDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKG  107 (144)
Q Consensus        37 EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~~  107 (144)
                      .||.+||+.+||..|.+.|..+  +=.++.+|    ||+=|+-++.  .-.|++=++++-++.+|-.-.+|
T Consensus        19 ~~V~~WL~sLrLhKY~~~F~~~--~~~~l~~L----tdedL~~~GV--ta~GaRrKil~aI~~lr~~~~~~   81 (88)
T 2d3d_A           19 KNIPMWLKSLRLHKYSDALSGT--PWIELIYL----DDETLEKKGV--LALGARRKLLKAFGIVIDYKERD   81 (88)
T ss_dssp             TCHHHHHHHTTCGGGHHHHTTS--CHHHHTTC----CHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHcccchhHHHHhcC--CHHHHHHc----CHHHHHHcCC--ccHhHHHHHHHHHHHHHHHHhcC
Confidence            5899999999999999999874  55678877    5555666773  66999999999999888765554

>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A

Probab=97.54  E-value=5e-05  Score=53.55  Aligned_cols=66  Identities=21%  Similarity=0.151  Sum_probs=46.5

Q ss_pred             cccccCCChhHHHHHHHhcCcchHH---HHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEINLGGYR---QIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA  103 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeeiGL~qYr---e~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~  103 (144)
                      +.+...||+|||..||... ..+|.   --|...+|||++|..||++.      |..|.- ..||.+  -..|+.+|-+
T Consensus         9 ~~DP~~WS~~~V~~WL~w~-~~ef~L~~~~~~~f~mdGk~Lc~Ls~ed------F~~~~p-~~GdiL--~~hL~~l~~~   77 (89)
T 1ji7_A            9 RLQPIYWSRDDVAQWLKWA-ENEFSLRPIDSNTFEMNGKALLLLTKED------FRYRSP-HSGDEL--YELLQHILKQ   77 (89)
T ss_dssp             CSCGGGCCHHHHHHHHHHH-HHHTTCSCCCTTTTCSCHHHHTTCCHHH------HHHHCT-TTHHHH--HHHHHHHHHC
T ss_pred             CCChhhCCHHHHHHHHHHH-HHhcCCCCCchhcCCCCHHHHHcCCHHH------HHhHcC-CchHHH--HHHHHHHHhC
Confidence            5678899999999999766 55565   12455679999999997643      444433 348864  4677776653

>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}

Probab=97.42  E-value=0.00027  Score=49.50  Aligned_cols=63  Identities=6%  Similarity=0.078  Sum_probs=51.0

Q ss_pred             HHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhh
Q 032278           38 DVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLK  106 (144)
Q Consensus        38 DVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~  106 (144)
                      -|++||+.||+++|.+.|.++++.  .+.++...|.|+    +.+..+..||.=+...-++.++.....
T Consensus         8 SV~~WLd~i~m~~Y~d~F~~~G~~--sl~~V~~lt~eD----L~~mGIt~gHqkkIl~siq~lr~~~~~   70 (82)
T 2y9t_A            8 SIVSFLARLGCSSCLDYFTTQGLT--TIYQIEHYSMDD----LASLKIPEQFRHAIWKGILDHRQLHEF   70 (82)
T ss_dssp             BHHHHHHHHTCGGGHHHHHTTTCC--BSGGGTTCCHHH----HHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHcCchHHHHHHHHcCCC--cHHHHHhcCHHH----HHhcCCChhhHHHHHhhHHHHHHHhcc
Confidence            699999999999999999999986  466677777665    455555569998999999888877655

>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.00021  Score=53.61  Aligned_cols=64  Identities=16%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             hhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhhC
Q 032278           36 FQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKG  107 (144)
Q Consensus        36 ~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~~  107 (144)
                      .+||.+||+.+||+.|.+.|.  +++-.+|..|    +|+-|+-++.  .-.|++=++++-++.++-.--+|
T Consensus        49 ~~dV~~WL~sLrL~KY~~~F~--~~~~d~l~~L----TeeDL~~lGV--ta~GaRrKlL~AI~~Lr~~k~~~  112 (119)
T 2b6g_A           49 LKNIPMWLKSLRLHKYSDALS--GTPWIELIYL----DDETLEKKGV--LALGARRKLLKAFGIVIDYKERD  112 (119)
T ss_dssp             HHCHHHHHHHHTCHHHHHHHT--TSCHHHHTTC----CHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHCCChhHHHHHc--cCCHHHHHhc----CHHHHHHCCC--CccccHHHHHHHHHHHHhhhccc
Confidence            479999999999999999995  4788899998    6777777774  56899988877777766554443

>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A

Probab=97.41  E-value=0.00042  Score=47.02  Aligned_cols=61  Identities=7%  Similarity=0.114  Sum_probs=46.8

Q ss_pred             HHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHH
Q 032278           38 DVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        38 DVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      -|++||+.||+++|.+.|.+++..  .+.++...|.|.    +.+.-+..||.=+...-++.++...
T Consensus         6 sv~~WLd~i~m~~Y~d~F~~~g~~--s~~~v~~lt~eD----L~~~GIt~ghqkkIl~siq~lr~~~   66 (69)
T 2y9u_A            6 SIVSFLARLGCSSCLDYFTTQGLT--TIYQIEHYSMDD----LASLKIPEQFRHAIWKGILDHRQLH   66 (69)
T ss_dssp             BHHHHHHTTTCGGGHHHHHTTTCC--BHHHHTTCCHHH----HHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHcCChHHHHHHHHcCCC--cHHHHHHcCHHH----HHhcCCChhhHHHHHHhHHHHHhcc
Confidence            489999999999999999999986  455566666654    5566555688888888887776543

>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A

Probab=97.41  E-value=0.00017  Score=53.04  Aligned_cols=63  Identities=14%  Similarity=0.167  Sum_probs=51.4

Q ss_pred             hHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhhC
Q 032278           37 QDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKG  107 (144)
Q Consensus        37 EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~~  107 (144)
                      .||.+||+.+||..|.+.|..+  +=+++..|    ||+=|+-++.  .-.|.+=++++-++.+|-.-.+|
T Consensus        32 ~dV~~WLksLrLhKY~~~F~~~--~~~~l~~L----TdedL~~~GV--ta~GARrKiL~aI~~Lr~~k~~~   94 (101)
T 2es6_A           32 KNIPMWLKSLRLHKYSDALSGT--PWIELIYL----DDETLEKKGV--LALGARRKLLKAFGIVIDYKERD   94 (101)
T ss_dssp             TCHHHHHHTTTCCCTHHHHTTS--CHHHHTTC----CHHHHHHHTC--CSHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cCHHHHHHHccCcchHHHHccC--CHHHHHhc----CHHHHHHcCC--ccHhHHHHHHHHHHHHHHHHHcC
Confidence            5999999999999999999885  55678887    5666666774  66999999999999888764444

>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13

Probab=96.79  E-value=0.00082  Score=53.37  Aligned_cols=56  Identities=29%  Similarity=0.465  Sum_probs=40.7

Q ss_pred             hHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           37 QDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        37 EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      .||.+||+.+||..|.+.|.+.  +=+++..|    ||+=|+-++.  .+ |.+=++++-++++|
T Consensus         8 ~dV~~WLksLrLhKY~~~F~~~--~~e~~~~L----TdedL~~~GV--T~-GARrKIL~aIq~Lr   63 (173)
T 1oxj_A            8 SGIGLWLKSLRLHKYIELFKNM--TYEEMLLI----TEDFLQSVGV--TK-GASHKLALCIDKLK   63 (173)
T ss_dssp             TTHHHHHHHTTCGGGGGGGTTC--CHHHHTTC----CHHHHHHTTC--CH-HHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHcccchhHHHHccC--CHHHHHhc----CHHHHHHCCC--ch-HHHHHHHHHHHHHH
Confidence            4999999999999999999875  44477777    4444444544  33 77777776666655

>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}

Probab=96.77  E-value=0.00075  Score=49.53  Aligned_cols=43  Identities=14%  Similarity=0.128  Sum_probs=38.9

Q ss_pred             cCCChhHHHHHHHhcCcchH-HHHhhHcCcChhhhccCcccchHHH
Q 032278           32 TLLSFQDVGLWLEEINLGGY-RQIFKENGVNGEYLEGMSMFTTEQI   76 (144)
Q Consensus        32 ~~WS~EDVa~WLeeiGL~qY-re~Fk~NnIdG~eLi~Ltk~T~e~i   76 (144)
                      .+=|++||.+||...||..| .+.|.  +.+|..|.+||+...++|
T Consensus        22 ~~Ssp~EV~~WL~~kgFS~~tv~~Lg--~ltGaqLf~Ltk~eL~~v   65 (99)
T 1wwu_A           22 YESGPDEVRAWLEAKAFSPRIVENLG--ILTGPQLFSLNKEELKKV   65 (99)
T ss_dssp             TTCCHHHHHHHHHHHTCCTTHHHHTT--SSCHHHHHTCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHc--CCCHHHHHcCCHHHHHHH
Confidence            34589999999999999999 99995  799999999999988887

>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.76  E-value=0.00066  Score=49.86  Aligned_cols=43  Identities=16%  Similarity=0.162  Sum_probs=38.9

Q ss_pred             cCCChhHHHHHHHhcCcchH-HHHhhHcCcChhhhccCcccchHHH
Q 032278           32 TLLSFQDVGLWLEEINLGGY-RQIFKENGVNGEYLEGMSMFTTEQI   76 (144)
Q Consensus        32 ~~WS~EDVa~WLeeiGL~qY-re~Fk~NnIdG~eLi~Ltk~T~e~i   76 (144)
                      ..=|++||.+||...||..| .+.|.  +.+|..|.+|++...++|
T Consensus        32 ~~Ssp~EV~~WL~~kgFS~~tv~~Lg--~ltGaqLl~Ltk~eL~~v   75 (99)
T 2e8m_A           32 YDSTPEDVKTWLQSKGFNPVTVNSLG--VLNGAQLFSLNKDELRTV   75 (99)
T ss_dssp             TTCCTTHHHHHHHHHTCCHHHHHHTS--SSCHHHHHHCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHc--CCCHHHHHcCCHHHHHHH
Confidence            35689999999999999998 99995  799999999999888876

>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.20  E-value=0.0033  Score=44.88  Aligned_cols=65  Identities=25%  Similarity=0.329  Sum_probs=44.2

Q ss_pred             CcccccCCChhHHHHHHH----hcCcchHHHHhhH-cCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           27 MPHALTLLSFQDVGLWLE----EINLGGYRQIFKE-NGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        27 ~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~-NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      .+.+-..||.++|..||.    +.+|....  |.. +++||++|-.||++.      |.+++--.-||.  |-.-|+.+|
T Consensus        20 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~--~~~F~~m~G~~LC~ls~ed------F~~~~~~~~Gdi--L~~hL~~Lk   89 (98)
T 1x66_A           20 VPADPTLWTQEHVRQWLEWAIKEYSLMEID--TSFFQNMDGKELCKMNKED------FLRATTLYNTEV--LLSHLSYLR   89 (98)
T ss_dssp             CCSSGGGCCTTHHHHHHHHHHHHTTCCSCC--GGGGTTCCHHHHHHCCHHH------HHTTSCHHHHHH--HHHHHHHHH
T ss_pred             CCCChhhcCHHHHHHHHHHHHHhcCCCCCC--hhhCCCCCHHHHHcCCHHH------HHHHcCCCchHH--HHHHHHHHH
Confidence            366778999999999995    45665431  333 379999999997653      666543334776  555566555

>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1

Probab=96.13  E-value=0.0054  Score=43.32  Aligned_cols=64  Identities=19%  Similarity=0.349  Sum_probs=44.0

Q ss_pred             CCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           26 DMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        26 ~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      ..+.+-..||.++|..||.    +.+|+...  |..=++||++|-.||++.      |.+|+- . ||.  |-.-|+.+|
T Consensus        18 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~--~~~f~m~G~~LC~ls~ed------F~~~~p-~-Gdi--L~~hL~~L~   85 (91)
T 1sxd_A           18 GIPYDPIHWSTDQVLHWVVWVMKEFSMTDID--LTTLNISGRELCSLNQED------FFQRVP-R-GEI--LWSHLELLR   85 (91)
T ss_dssp             TCCSSGGGCCHHHHHHHHHHHHHHTTCCCSC--SGGGCSCHHHHHHSCHHH------HHHHCT-T-CHH--HHHHHHHHH
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHccCCCCCC--hhhCCCCHHHHHcCCHHH------HHHHCC-C-chH--HHHHHHHHH
Confidence            4567889999999999985    45666441  333489999999997653      666664 4 984  344444443

>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A

Probab=96.00  E-value=0.0056  Score=42.80  Aligned_cols=66  Identities=27%  Similarity=0.377  Sum_probs=44.6

Q ss_pred             CcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           27 MPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        27 ~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      .+.+-..||.++|..||.    +.+|+.-.  |..=++||++|-.||++.      |.+|+- .-||.+  -.-|+.+|-
T Consensus         6 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~--~~~F~m~G~~LC~ls~ed------F~~~~p-~~GdiL--~~hL~~Lk~   74 (85)
T 1sv0_A            6 LPSDPRLWSREDVLVFLRFCVREFDLPKLD--FDLFQMNGKRLCLLTRAD------FGHRCP-GAGDVL--HNVLQMLII   74 (85)
T ss_dssp             SCSSGGGCCHHHHHHHHHHHHHHTTCCCCC--GGGGCSCHHHHTTCCHHH------HHHHST-TTHHHH--HHHHHHHHH
T ss_pred             CCCChhhCCHHHHHHHHHHHHHccCCCCCC--hhhCCCCHHHHHcCCHHH------HHHHcC-CchHHH--HHHHHHHHH
Confidence            366778999999999996    45665431  223369999999997753      666754 468753  444555554


Q ss_pred             H
Q 032278          103 A  103 (144)
Q Consensus       103 ~  103 (144)
                      +
T Consensus        75 ~   75 (85)
T 1sv0_A           75 E   75 (85)
T ss_dssp             H
T ss_pred             h
Confidence            3

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=95.36  E-value=0.0053  Score=47.26  Aligned_cols=21  Identities=10%  Similarity=0.082  Sum_probs=18.3

Q ss_pred             hhhheecccceeEeeecCCcc
Q 032278            9 TFLVYGRKQKSVNIWFNDMPH   29 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~l   29 (144)
                      .+|||||.|+||+||+++...
T Consensus       325 ~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          325 TYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             CEEEEEETTSEEEEEECCTTT
T ss_pred             CEEEEEeCCCeEEEEEcCCCC
Confidence            479999999999999997544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.00  E-value=0.0069  Score=43.26  Aligned_cols=19  Identities=11%  Similarity=0.375  Sum_probs=16.9

Q ss_pred             hhhhheecccceeEeeecC
Q 032278            8 LTFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         8 ~~~LATGSmDKsV~IWql~   26 (144)
                      -.+|||||.|++|+||++.
T Consensus        51 ~~~l~S~s~D~~i~vWd~~   69 (340)
T 4aow_A           51 PDMILSASRDKTIIMWKLT   69 (340)
T ss_dssp             TTEEEEEETTSCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECC
Confidence            3589999999999999984

>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.72  E-value=0.016  Score=41.11  Aligned_cols=66  Identities=23%  Similarity=0.168  Sum_probs=45.4

Q ss_pred             CCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           26 DMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        26 ~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      ..+.+-..||.++|..||.    +.+|+...  +..-++||++|-.||++.      |.+|.- .-||.+  -.-|+.+|
T Consensus        19 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~--~~~f~m~G~~LC~lsked------F~~~~p-~~GdiL--~~hL~~Lk   87 (96)
T 2dkx_A           19 NITADPMDWSPSNVQKWLLWTEHQYRLPPMG--KAFQELAGKELCAMSEEQ------FRQRSP-LGGDVL--HAHLDIWK   87 (96)
T ss_dssp             TCCSCGGGCCSSTHHHHHHHHHHHTTCCCCH--HHHSSCCHHHHHHSCHHH------HHHHCS-SSTHHH--HHHHHHHH
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHhcCCCCCC--cccCCCCHHHHHhCCHHH------HHHHcC-cchHHH--HHHHHHHH
Confidence            4467788999999999985    55777643  344469999999997653      555644 458863  44454444


Q ss_pred             H
Q 032278          102 V  102 (144)
Q Consensus       102 v  102 (144)
                      -
T Consensus        88 ~   88 (96)
T 2dkx_A           88 S   88 (96)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*

Probab=94.55  E-value=0.0099  Score=43.34  Aligned_cols=56  Identities=21%  Similarity=0.382  Sum_probs=38.3

Q ss_pred             CCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhcc-chH
Q 032278           26 DMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW-GDF   90 (144)
Q Consensus        26 ~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~-gd~   90 (144)
                      ..+.+-..||.++|..||.    +.+|+...  |..=++||++|-.||++.      |.+|+- .+ ||.
T Consensus        36 ~ip~DP~~WS~~~V~~WL~W~~~ef~L~~v~--~~~F~m~G~~LC~ls~ed------F~~~~p-~~~Gdi   96 (110)
T 2jv3_A           36 GIPKDPRQWTETHVRDWVMWAVNEFSLKGVD--FQKFCMSGAALCALGKEC------FLELAP-DFVGDI   96 (110)
T ss_dssp             TCCSSSTTCCHHHHHHHHHHHHHHHTCCCCC--TTTTCCCHHHHHHTHHHH------HHHHSC-HHHHHH
T ss_pred             CCCCChHhCCHHHHHHHHHHHHHhcCCCCCC--hhcCCCCHHHHHhCCHHH------HHHHcC-CCcHHH
Confidence            4467889999999999984    45666431  222379999999997653      555532 33 665

>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A

Probab=94.15  E-value=0.024  Score=40.67  Aligned_cols=45  Identities=16%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             hhHHHHHHHhcCcchHHHHhhHcCc--Chh----hhccCcccchHHHHHHH
Q 032278           36 FQDVGLWLEEINLGGYRQIFKENGV--NGE----YLEGMSMFTTEQILRFI   80 (144)
Q Consensus        36 ~EDVa~WLeeiGL~qYre~Fk~NnI--dG~----eLi~Ltk~T~e~il~~i   80 (144)
                      ..|.|.||+.-||+||-+.|+++.+  |=.    .=.-|.+.+.++..|-|
T Consensus        21 A~eAC~WLRaaGFPQYAqlyed~qFPIdi~~VkkDH~FLd~d~l~sL~RRl   71 (81)
T 2h80_A           21 AKEACDWLRAAGFPQYAQLYEDSQFPINIVAVKNDHDFLEKDLVEPLCRRL   71 (81)
T ss_dssp             HHHHHHHHHHTTCHHHHHTTTTTCCCSCHHHHHTSCCSSCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHhhcccccccHHHhccCCCccCHHHHHHHHHHH
Confidence            4578999999999999999999953  322    23446677777774443

>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A

Probab=94.08  E-value=0.012  Score=42.99  Aligned_cols=46  Identities=13%  Similarity=0.196  Sum_probs=31.4

Q ss_pred             CCChhHHHHHHHhcCcchHHHHhhHcCc--Chh----hhccCcccchHHHHH
Q 032278           33 LLSFQDVGLWLEEINLGGYRQIFKENGV--NGE----YLEGMSMFTTEQILR   78 (144)
Q Consensus        33 ~WS~EDVa~WLeeiGL~qYre~Fk~NnI--dG~----eLi~Ltk~T~e~il~   78 (144)
                      .=...|.|.||+.-||+||-+.|+++.+  |=.    .=.-|.+.+.++..|
T Consensus        20 E~eA~eAC~WLRaaGFPQYAqlyed~~FPIdi~~VkkDH~FLd~d~l~sL~R   71 (91)
T 2dky_A           20 QIEAKEACDWLRATGFPQYAQLYEDFLFPIDISLVKREHDFLDRDAIEALCR   71 (91)
T ss_dssp             HHHHHHHHHHHHHHTCTTHHHHHHTTCCSCCHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHhcccccccccHHHhccCCCccCHHHHHHHHH
Confidence            3345689999999999999999999853  222    123354555555533

>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.49  E-value=0.052  Score=40.78  Aligned_cols=66  Identities=24%  Similarity=0.275  Sum_probs=44.3

Q ss_pred             cccccCCChhHHHHHHH----hcCcchHHHHhhHc-CcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLE----EINLGGYRQIFKEN-GVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~N-nIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      +.+-..||.++|..||.    +.+|...  -|..= +|||++|-.||++.      |.+++----||.  |-.-|+.||-
T Consensus        35 P~DP~~WS~~~V~~WL~Wa~~ef~L~~i--d~~~Fq~mnGk~LC~LskeD------F~~~~p~~~GDi--L~~hL~~Lr~  104 (128)
T 2ytu_A           35 PADPTLWTQEHVRQWLEWAIKEYSLMEI--DTSFFQNMDGKELCKMNKED------FLRATTLYNTEV--LLSHLSYLRE  104 (128)
T ss_dssp             CSCGGGCCTTHHHHHHHHHHHHTCCCSC--CCGGGSSCCTTHHHHCCHHH------HHHHSCHHHHHH--HHHHHHHHHH
T ss_pred             CcchhhCCHHHHHHHHHHHHHhcCCCCC--ChHhCCCCCHHHHHcCCHHH------HHHHcCCCchHH--HHHHHHHHHh
Confidence            56778999999999985    4566442  13333 69999999997653      666642224776  4455666654


Q ss_pred             H
Q 032278          103 A  103 (144)
Q Consensus       103 ~  103 (144)
                      +
T Consensus       105 ~  105 (128)
T 2ytu_A          105 S  105 (128)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1

Probab=93.12  E-value=0.05  Score=38.72  Aligned_cols=57  Identities=28%  Similarity=0.328  Sum_probs=38.8

Q ss_pred             CcccccCCChhHHHHHHH----hcCcchHHHHhhH-cCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278           27 MPHALTLLSFQDVGLWLE----EINLGGYRQIFKE-NGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI   91 (144)
Q Consensus        27 ~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~-NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i   91 (144)
                      .+.+-..||.++|..||.    +.+|...-  +.. +++||++|-.||++.      |.+++--.=||.+
T Consensus        23 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~--~~~F~~m~G~~LC~lt~ed------F~~~~p~~~GdiL   84 (97)
T 1sxe_A           23 VPADPTLWSTDHVRQWLEWAVKEYGLPDVN--ILLFQNIDGKELCKMTKDD------FQRLTPSYNADIL   84 (97)
T ss_dssp             SCSSTTSCCHHHHHHHHHHHHHHHTCSSCC--GGGSTTCCHHHHTTCCHHH------HTTTSCHHHHHHH
T ss_pred             CCcchhccCHHHHHHHHHHHHHhcCCCCCC--HHhcCCCCHHHHHhCCHHH------HHHHcCCCchHHH
Confidence            366788999999999985    55775431  333 379999999998753      5555322236653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=93.03  E-value=0.029  Score=43.15  Aligned_cols=20  Identities=5%  Similarity=0.115  Sum_probs=17.4

Q ss_pred             hhhheecccceeEeeecCCc
Q 032278            9 TFLVYGRKQKSVNIWFNDMP   28 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~   28 (144)
                      .+|||||.|++|+||++...
T Consensus       377 ~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          377 ATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             SCEEEEETTTEEEEECCSCS
T ss_pred             CEEEEEecCCeEEEEECCCC
Confidence            47999999999999999543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=92.92  E-value=0.032  Score=43.04  Aligned_cols=17  Identities=12%  Similarity=0.157  Sum_probs=15.9

Q ss_pred             hhhheecccceeEeeec
Q 032278            9 TFLVYGRKQKSVNIWFN   25 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql   25 (144)
                      .+|||||.|++|+||++
T Consensus       157 ~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A          157 QVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             EEEEEEETTSEEEEEEE
T ss_pred             CEEEEEECCCeEEEEEC
Confidence            47999999999999998

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=91.87  E-value=0.026  Score=42.47  Aligned_cols=19  Identities=21%  Similarity=0.281  Sum_probs=16.6

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        49 ~~l~tgs~D~~v~vW~~~~   67 (321)
T 3ow8_A           49 ETVVTGSLDDLVKVWKWRD   67 (321)
T ss_dssp             CEEEEEETTSCEEEEEEET
T ss_pred             CEEEEEcCCCCEEEEECCC
Confidence            4699999999999999844

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=91.13  E-value=0.069  Score=39.66  Aligned_cols=18  Identities=28%  Similarity=0.187  Sum_probs=16.4

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||.+.
T Consensus        26 ~~lasgs~D~~v~lwd~~   43 (316)
T 3bg1_A           26 TRLATCSSDRSVKIFDVR   43 (316)
T ss_dssp             CEEEEEETTTEEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEEec
Confidence            579999999999999984

>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.98  E-value=0.09  Score=37.49  Aligned_cols=57  Identities=14%  Similarity=0.087  Sum_probs=38.9

Q ss_pred             cccccCCChhHHHHHHHhc----CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278           28 PHALTLLSFQDVGLWLEEI----NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI   91 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeei----GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i   91 (144)
                      +.+-..||.++|..||.--    +|.-=.--|..=+|||++|=+||++.      |++|+-- -||.+
T Consensus        21 ~~dP~~Ws~~~V~~WL~Wavke~~~dl~~i~~~~f~m~G~~LC~msked------F~~~~p~-~GdiL   81 (92)
T 2e8p_A           21 GEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEE------LRLVFGP-LGDQL   81 (92)
T ss_dssp             SSCGGGCCHHHHHHHHHHHHHHTTCCCSSCCTTTCCCCSHHHHHSCHHH------HHHHSGG-GHHHH
T ss_pred             CCChhhcCHHHHHHHHHHHHHHhCCCCCCCChhhcCCCHHHHHcCCHHH------HHHHcCC-cHHHH
Confidence            4566899999999999633    44211111333379999999997753      7777655 78864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=90.69  E-value=0.087  Score=37.17  Aligned_cols=19  Identities=21%  Similarity=0.517  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus        80 ~~l~sgs~Dg~v~iw~~~~   98 (318)
T 4ggc_A           80 NYLAVGTSSAEVQLWDVQQ   98 (318)
T ss_dssp             SEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEECCCcEEEeecCC
Confidence            4789999999999999854

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=90.66  E-value=0.087  Score=38.64  Aligned_cols=19  Identities=26%  Similarity=0.331  Sum_probs=16.9

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        68 ~~l~s~s~D~~v~iWd~~~   86 (297)
T 2pm7_B           68 TILASCSYDGKVMIWKEEN   86 (297)
T ss_dssp             SEEEEEETTTEEEEEEBSS
T ss_pred             CEEEEEcCCCEEEEEEcCC
Confidence            5799999999999999853

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=90.55  E-value=0.08  Score=39.50  Aligned_cols=18  Identities=33%  Similarity=0.564  Sum_probs=16.3

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||++.
T Consensus        40 ~~l~sgs~D~~v~iWd~~   57 (343)
T 2xzm_R           40 PVLISGSRDKTVMIWKLY   57 (343)
T ss_dssp             CEEEEEETTSCEEEEEEC
T ss_pred             CEEEEEcCCCEEEEEECC
Confidence            479999999999999984

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=90.54  E-value=0.083  Score=37.65  Aligned_cols=29  Identities=7%  Similarity=-0.054  Sum_probs=21.7

Q ss_pred             hhhheecccceeEeeecCCcccccCCChh
Q 032278            9 TFLVYGRKQKSVNIWFNDMPHALTLLSFQ   37 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~l~~~~WS~E   37 (144)
                      .+|||||.|++|+||++...........+
T Consensus       328 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~  356 (369)
T 3zwl_B          328 TSYASGGEDGFIRLHHFEKSYFDFKYDVE  356 (369)
T ss_dssp             SEEEEEETTSEEEEEEECHHHHTCCCHHH
T ss_pred             CEEEEEcCCCeEEEEECccccchhHHHHH
Confidence            47999999999999999775543333333

>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}

Probab=90.53  E-value=0.096  Score=41.39  Aligned_cols=43  Identities=23%  Similarity=0.228  Sum_probs=31.8

Q ss_pred             CcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCccc
Q 032278           27 MPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMF   71 (144)
Q Consensus        27 ~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~   71 (144)
                      .+.+-..||.++|..||.    +..|+...  |..=.+||++|-+||++
T Consensus         8 ~p~dP~~Wt~~~V~~Wl~w~~~~f~l~~~~--~~~f~~~G~~Lc~m~~~   54 (241)
T 2qb0_B            8 LRLQPIYWSRDDVAQWLKWAENEFSLRPID--SNTFEMNGKALLLLTKE   54 (241)
T ss_dssp             GGSCGGGCCHHHHHHHHHHHHHHTTCSCCC--TTTTCSCHHHHTTCCHH
T ss_pred             CCCChhhCCHHHHHHHHHHHHHhcCCCCCC--HHhcCCChHHHHHcCHH
Confidence            366778999999999996    45665541  23334999999999764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=90.46  E-value=0.086  Score=38.66  Aligned_cols=18  Identities=11%  Similarity=0.178  Sum_probs=16.4

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||++.
T Consensus        22 ~~las~s~D~~v~iw~~~   39 (297)
T 2pm7_B           22 KRMATCSSDKTIKIFEVE   39 (297)
T ss_dssp             SEEEEEETTSCEEEEEBC
T ss_pred             CEEEEEeCCCEEEEEecC
Confidence            579999999999999984

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=89.31  E-value=0.12  Score=38.91  Aligned_cols=18  Identities=22%  Similarity=0.475  Sum_probs=16.3

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||.+.
T Consensus        29 ~~las~~~D~~i~iw~~~   46 (345)
T 3fm0_A           29 TLLASCGGDRRIRIWGTE   46 (345)
T ss_dssp             SCEEEEETTSCEEEEEEE
T ss_pred             CEEEEEcCCCeEEEEEcC
Confidence            579999999999999884

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=89.10  E-value=0.12  Score=40.08  Aligned_cols=18  Identities=17%  Similarity=0.370  Sum_probs=16.3

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||++.
T Consensus       133 ~~lasGs~dg~i~lWd~~  150 (435)
T 4e54_B          133 STVAVGSKGGDIMLWNFG  150 (435)
T ss_dssp             TCEEEEETTSCEEEECSS
T ss_pred             CEEEEEeCCCEEEEEECC
Confidence            479999999999999983

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=88.94  E-value=0.14  Score=38.09  Aligned_cols=18  Identities=17%  Similarity=0.373  Sum_probs=16.2

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||++.
T Consensus        31 ~~l~s~s~D~~v~~W~~~   48 (319)
T 3frx_A           31 NLLLSASRDKTLISWKLT   48 (319)
T ss_dssp             TEEEEEETTSEEEEEEEE
T ss_pred             cEEEEecCCccEEEecCC
Confidence            579999999999999873

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=88.50  E-value=0.16  Score=37.79  Aligned_cols=19  Identities=11%  Similarity=0.323  Sum_probs=16.7

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        78 ~~l~s~s~D~~v~~wd~~~   96 (319)
T 3frx_A           78 AYALSASWDKTLRLWDVAT   96 (319)
T ss_dssp             SEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEeCCCEEEEEECCC
Confidence            4799999999999999843

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=88.22  E-value=0.15  Score=39.12  Aligned_cols=19  Identities=11%  Similarity=0.060  Sum_probs=16.9

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus       282 ~~lasgs~D~~V~iwd~~~  300 (365)
T 4h5i_A          282 ELAVLASNDNSIALVKLKD  300 (365)
T ss_dssp             CEEEEEETTSCEEEEETTT
T ss_pred             CceEEEcCCCEEEEEECCC
Confidence            4799999999999999854

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=88.22  E-value=0.16  Score=37.32  Aligned_cols=19  Identities=16%  Similarity=0.511  Sum_probs=16.6

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus       110 ~~l~sgs~D~~v~lWd~~~  128 (304)
T 2ynn_A          110 PYVLSGSDDLTVKLWNWEN  128 (304)
T ss_dssp             SEEEEEETTSCEEEEEGGG
T ss_pred             CEEEEECCCCeEEEEECCC
Confidence            4789999999999999843

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=88.00  E-value=0.18  Score=38.43  Aligned_cols=18  Identities=11%  Similarity=0.348  Sum_probs=16.2

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||...
T Consensus        79 ~~l~s~s~D~~v~iWd~~   96 (380)
T 3iz6_a           79 NWIVSASQDGRLIVWNAL   96 (380)
T ss_dssp             SCEEEEETTSEEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECC
Confidence            479999999999999973

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=87.87  E-value=0.16  Score=37.73  Aligned_cols=19  Identities=21%  Similarity=0.354  Sum_probs=16.9

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        72 ~~l~s~s~D~~v~iWd~~~   90 (316)
T 3bg1_A           72 NILASCSYDRKVIIWREEN   90 (316)
T ss_dssp             SCEEEEETTSCEEEECCSS
T ss_pred             CEEEEEECCCEEEEEECCC
Confidence            5899999999999999853

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=87.81  E-value=0.17  Score=37.81  Aligned_cols=18  Identities=39%  Similarity=0.584  Sum_probs=16.3

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||++.
T Consensus       120 ~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X          120 YYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             CEEEEEETTSCEEEEECC
T ss_pred             CEEEEEeCCCEEEEEecc
Confidence            479999999999999983

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=87.54  E-value=0.2  Score=34.82  Aligned_cols=18  Identities=6%  Similarity=0.165  Sum_probs=16.3

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||++.
T Consensus        24 ~~l~~~~~dg~i~iw~~~   41 (351)
T 3f3f_A           24 RHVATCSSDQHIKVFKLD   41 (351)
T ss_dssp             SEEEEEETTSEEEEEEEC
T ss_pred             CEEEEeeCCCeEEEEECC
Confidence            479999999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=87.46  E-value=0.19  Score=38.93  Aligned_cols=18  Identities=0%  Similarity=-0.167  Sum_probs=16.3

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||.+.
T Consensus       178 ~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          178 NQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             TEEEEECSSSCEEEEETT
T ss_pred             CEEEEEeCCCEEEEeecc
Confidence            479999999999999984

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=87.46  E-value=0.2  Score=37.32  Aligned_cols=19  Identities=16%  Similarity=0.344  Sum_probs=16.6

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        89 ~~l~s~s~D~~v~lwd~~~  107 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRT  107 (343)
T ss_dssp             TEEEEEETTSEEEEEETTS
T ss_pred             CEEEEEcCCCcEEEEECCC
Confidence            4789999999999999843

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=87.34  E-value=0.18  Score=42.31  Aligned_cols=18  Identities=11%  Similarity=-0.060  Sum_probs=16.5

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||+|++|+||++.
T Consensus       324 ~~laS~S~D~tvklWD~~  341 (524)
T 2j04_B          324 TVVSTVAVDGYFYIFNPK  341 (524)
T ss_dssp             CEEEEEETTSEEEEECGG
T ss_pred             eEEEEeccCCeEEEEECC
Confidence            579999999999999983

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=87.19  E-value=0.18  Score=38.45  Aligned_cols=19  Identities=21%  Similarity=0.219  Sum_probs=17.0

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus       283 ~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          283 PFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             CCEEEEETTSCEEEECTTS
T ss_pred             CEEEEEeCCCEEEEEECCC
Confidence            5799999999999999854

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=87.14  E-value=0.21  Score=36.67  Aligned_cols=19  Identities=11%  Similarity=0.471  Sum_probs=16.9

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus       199 ~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          199 PYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             CEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEcCCCeEEEEeCCC
Confidence            4799999999999999855

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=87.14  E-value=0.2  Score=42.36  Aligned_cols=19  Identities=16%  Similarity=0.170  Sum_probs=17.1

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+||+||.|++|+||++..
T Consensus       194 ~~LaSgS~D~TIkIWDl~T  212 (356)
T 2w18_A          194 EALLGTTIMNNIVIWNLKT  212 (356)
T ss_dssp             TEEEEEETTSEEEEEETTT
T ss_pred             ceEEEecCCCcEEEEECCC
Confidence            5799999999999999954

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=86.98  E-value=0.21  Score=37.75  Aligned_cols=18  Identities=28%  Similarity=0.637  Sum_probs=16.4

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||++.
T Consensus        77 ~~l~s~s~dg~v~vwd~~   94 (437)
T 3gre_A           77 PYLITGSDQGVIKIWNLK   94 (437)
T ss_dssp             CEEEEEETTSEEEEEEHH
T ss_pred             CEEEEecCCceEEEeECc
Confidence            589999999999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=86.86  E-value=0.19  Score=38.72  Aligned_cols=20  Identities=15%  Similarity=0.195  Sum_probs=17.4

Q ss_pred             hhhhheecccceeEeeecCC
Q 032278            8 LTFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         8 ~~~LATGSmDKsV~IWql~~   27 (144)
                      -.+|||||.|++|+||++..
T Consensus       270 ~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          270 VPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             SCCEEEEETTSCEEEECTTC
T ss_pred             CeEEEEEeCCCeEEEEECCC
Confidence            45899999999999998854

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=86.78  E-value=0.22  Score=34.65  Aligned_cols=20  Identities=15%  Similarity=0.210  Sum_probs=17.8

Q ss_pred             hhhheecccceeEeeecCCc
Q 032278            9 TFLVYGRKQKSVNIWFNDMP   28 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~   28 (144)
                      .+|||||.|++|+||++...
T Consensus       231 ~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             EEEEEEETTSCEEEEEEEEC
T ss_pred             eEEEEEcCCCeEEEEeCCCC
Confidence            58999999999999999653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=85.66  E-value=0.28  Score=37.24  Aligned_cols=18  Identities=17%  Similarity=0.229  Sum_probs=16.1

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||+..
T Consensus        77 ~~l~s~s~Dg~v~vWd~~   94 (354)
T 2pbi_B           77 RRIVSSSQDGKVIVWDSF   94 (354)
T ss_dssp             SEEEEEETTSEEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECC
Confidence            479999999999999973

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=85.53  E-value=0.27  Score=36.70  Aligned_cols=18  Identities=11%  Similarity=0.239  Sum_probs=16.3

Q ss_pred             hhheecccceeEeeecCC
Q 032278           10 FLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus        10 ~LATGSmDKsV~IWql~~   27 (144)
                      +|||||.|++|+||.+..
T Consensus        26 ~las~~~D~~i~lw~~~~   43 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKY   43 (330)
T ss_dssp             EEEEEESSSCEEEEECSS
T ss_pred             EEEEEcCCCEEEEEEecC
Confidence            799999999999999853

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=85.52  E-value=0.27  Score=37.40  Aligned_cols=20  Identities=5%  Similarity=-0.009  Sum_probs=17.5

Q ss_pred             hhhheecccceeEeeecCCc
Q 032278            9 TFLVYGRKQKSVNIWFNDMP   28 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~   28 (144)
                      .+|||||.|++|+||++...
T Consensus       262 ~~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          262 QRFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             SEEEEECSSSCEEEEETTTT
T ss_pred             CeEEEEcCCCeEEEEECCCC
Confidence            47999999999999999653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=85.48  E-value=0.25  Score=37.48  Aligned_cols=19  Identities=0%  Similarity=0.163  Sum_probs=17.0

Q ss_pred             hhhheecccce-eEeeecCC
Q 032278            9 TFLVYGRKQKS-VNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKs-V~IWql~~   27 (144)
                      .+|||||.|++ |+||++..
T Consensus       208 ~~l~s~s~d~~~v~iwd~~~  227 (355)
T 3vu4_A          208 DMVATCSQDGTIIRVFKTED  227 (355)
T ss_dssp             SEEEEEETTCSEEEEEETTT
T ss_pred             CEEEEEeCCCCEEEEEECCC
Confidence            57999999999 99999954

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=85.23  E-value=0.28  Score=36.87  Aligned_cols=19  Identities=32%  Similarity=0.443  Sum_probs=16.7

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus       118 ~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A          118 NLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             SEEEEEETTSCEEEEEECT
T ss_pred             CEEEEEECCCeEEEEECCC
Confidence            4799999999999999843

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=85.00  E-value=0.31  Score=36.36  Aligned_cols=18  Identities=17%  Similarity=0.338  Sum_probs=16.1

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||.+.
T Consensus        68 ~~l~s~s~Dg~v~iWd~~   85 (340)
T 1got_B           68 RLLLSASQDGKLIIWDSY   85 (340)
T ss_dssp             SEEEEEETTTEEEEEETT
T ss_pred             CEEEEEeCCCcEEEEECC
Confidence            479999999999999974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=84.87  E-value=0.36  Score=36.61  Aligned_cols=20  Identities=5%  Similarity=-0.109  Sum_probs=17.5

Q ss_pred             hhhheecccceeEeeecCCc
Q 032278            9 TFLVYGRKQKSVNIWFNDMP   28 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~   28 (144)
                      .+|||||.|++|+||++..+
T Consensus       253 ~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          253 SKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CEEEEEETTCEEEEEESSCC
T ss_pred             CEEEEEECCCEEEEEEccCC
Confidence            47999999999999999653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=84.65  E-value=0.34  Score=35.12  Aligned_cols=20  Identities=15%  Similarity=0.303  Sum_probs=17.2

Q ss_pred             hhhheecccceeEeeecCCc
Q 032278            9 TFLVYGRKQKSVNIWFNDMP   28 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~   28 (144)
                      .+|||||.|++|+||++...
T Consensus       347 ~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          347 QELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             TEEEEEETTSCEEEEEECC-
T ss_pred             CEEEEECCCCeEEEEeCCCC
Confidence            57999999999999999653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=84.45  E-value=0.35  Score=34.35  Aligned_cols=19  Identities=16%  Similarity=0.293  Sum_probs=16.9

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus       228 ~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          228 SLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             SEEEEEETTCEEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEEecc
Confidence            4799999999999999855

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=84.40  E-value=0.31  Score=36.15  Aligned_cols=19  Identities=0%  Similarity=-0.216  Sum_probs=16.3

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~   67 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKD   67 (343)
T ss_dssp             EEEEEEEETTEEEEEEESS
T ss_pred             CEEEEECCCCcEEEEECCC
Confidence            4689999999999999854

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=84.36  E-value=0.31  Score=37.53  Aligned_cols=19  Identities=26%  Similarity=0.371  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus       140 ~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B          140 TQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             SEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCC
Confidence            5799999999999999843

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=83.95  E-value=0.33  Score=39.85  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=17.4

Q ss_pred             hhhheecccceeEeeecCCc
Q 032278            9 TFLVYGRKQKSVNIWFNDMP   28 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~   28 (144)
                      .+|||||.|++|+||++..+
T Consensus       549 ~~lasgs~D~~v~lW~~~~~  568 (611)
T 1nr0_A          549 VRLATGSLDNSVIVWNMNKP  568 (611)
T ss_dssp             SEEEEEETTSCEEEEETTCT
T ss_pred             CEEEEEECCCcEEEEECCCc
Confidence            47999999999999999653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=83.71  E-value=0.37  Score=39.85  Aligned_cols=18  Identities=22%  Similarity=0.475  Sum_probs=16.3

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||++.
T Consensus       396 ~~l~s~s~D~~i~~W~~~  413 (694)
T 3dm0_A          396 DIIVSASRDKSIILWKLT  413 (694)
T ss_dssp             SEEEEEETTSEEEEEECC
T ss_pred             CEEEEEeCCCcEEEEEcc
Confidence            579999999999999884

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=83.62  E-value=0.35  Score=37.21  Aligned_cols=17  Identities=18%  Similarity=0.290  Sum_probs=15.5

Q ss_pred             hhhheecccceeEeeec
Q 032278            9 TFLVYGRKQKSVNIWFN   25 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql   25 (144)
                      .+||+||.|++|+||+.
T Consensus       102 ~~las~~~d~~v~lw~~  118 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIIT  118 (393)
T ss_dssp             EEEEEEETTSCEEEEEE
T ss_pred             CEEEEEeCCCcEEEEEC
Confidence            36999999999999987

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=83.31  E-value=0.41  Score=35.92  Aligned_cols=19  Identities=5%  Similarity=0.176  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .++||||.|++|+||.+..
T Consensus        93 ~~l~s~s~D~~i~lWd~~~  111 (321)
T 3ow8_A           93 PIAASSSLDAHIRLWDLEN  111 (321)
T ss_dssp             SEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEeCCCcEEEEECCC
Confidence            5789999999999999844

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=83.06  E-value=0.39  Score=36.82  Aligned_cols=19  Identities=21%  Similarity=0.517  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus       160 ~~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          160 NYLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             SEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEECCCeEEEEEcCC
Confidence            4799999999999999854

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=82.68  E-value=0.46  Score=33.78  Aligned_cols=19  Identities=26%  Similarity=0.440  Sum_probs=17.1

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        55 ~~l~~~~~dg~i~iw~~~~   73 (368)
T 3mmy_A           55 NFLIAGSWANDVRCWEVQD   73 (368)
T ss_dssp             EEEEEEETTSEEEEEEECT
T ss_pred             eEEEEECCCCcEEEEEcCC
Confidence            5899999999999999953

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=82.32  E-value=0.48  Score=33.09  Aligned_cols=19  Identities=16%  Similarity=0.337  Sum_probs=16.5

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        30 ~~l~s~~~dg~v~vw~~~~   48 (313)
T 3odt_A           30 SKVASVSRDGTVRLWSKDD   48 (313)
T ss_dssp             TEEEEEETTSEEEEEEESS
T ss_pred             CEEEEEEcCCcEEEEECCC
Confidence            4699999999999999843

>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}

Probab=82.10  E-value=1.5  Score=30.50  Aligned_cols=43  Identities=19%  Similarity=0.386  Sum_probs=34.5

Q ss_pred             chHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHH
Q 032278           49 GGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELR   98 (144)
Q Consensus        49 ~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~   98 (144)
                      +.|-..|.+|.|+-.-|..|    +..+||-++.   +-||.|...|=|.
T Consensus        20 ~rYA~~F~~~ri~e~mL~Dl----~~~~Lr~LGi---~eGDIIrVmk~l~   62 (72)
T 3idw_A           20 QRYTINFDREQLTEDMMPDI----NNSMLRTLGL---REGDIVRVMKHLD   62 (72)
T ss_dssp             HHHHHHHHHTTCCGGGGGGC----CHHHHHHTTC---CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCHHHHhhC----CHHHHHHcCC---chhhHHHHHHHHH
Confidence            47999999999999999999    4566776665   4699998776554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=81.85  E-value=0.56  Score=35.36  Aligned_cols=19  Identities=16%  Similarity=0.298  Sum_probs=17.1

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        95 ~~l~s~s~dg~v~vw~~~~  113 (402)
T 2aq5_A           95 NVIASGSEDCTVMVWEIPD  113 (402)
T ss_dssp             TEEEEEETTSEEEEEECCT
T ss_pred             CEEEEEeCCCeEEEEEccC
Confidence            5899999999999999854

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=81.70  E-value=0.47  Score=35.96  Aligned_cols=20  Identities=5%  Similarity=0.082  Sum_probs=17.4

Q ss_pred             hhhheecccceeEeeecCCc
Q 032278            9 TFLVYGRKQKSVNIWFNDMP   28 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~   28 (144)
                      .+|||||.|++|+||++...
T Consensus       253 ~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          253 DAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             SEEEEEETTSCEEEEETTTT
T ss_pred             CEEEEEeCCCeEEEEECCCC
Confidence            47999999999999998653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=81.61  E-value=0.48  Score=35.34  Aligned_cols=20  Identities=5%  Similarity=0.082  Sum_probs=17.3

Q ss_pred             hhhheecccceeEeeecCCc
Q 032278            9 TFLVYGRKQKSVNIWFNDMP   28 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~   28 (144)
                      .+|||||.|++|+||++...
T Consensus       239 ~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          239 NAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTT
T ss_pred             CEEEEEcCCCcEEEEECCCC
Confidence            47999999999999998653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=81.54  E-value=0.5  Score=38.77  Aligned_cols=18  Identities=22%  Similarity=0.434  Sum_probs=16.4

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||++.
T Consensus        72 ~~lasg~~d~~v~lWd~~   89 (611)
T 1nr0_A           72 YYCASGDVHGNVRIWDTT   89 (611)
T ss_dssp             SEEEEEETTSEEEEEESS
T ss_pred             cEEEEEeCCCCEEEeECC
Confidence            579999999999999984

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=81.50  E-value=0.52  Score=36.50  Aligned_cols=19  Identities=26%  Similarity=0.693  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus       309 ~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          309 PFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             CEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCC
Confidence            3799999999999999854

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=81.39  E-value=0.5  Score=35.03  Aligned_cols=21  Identities=10%  Similarity=0.164  Sum_probs=17.8

Q ss_pred             hhhheecccceeEeeecCCcc
Q 032278            9 TFLVYGRKQKSVNIWFNDMPH   29 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~l   29 (144)
                      .+|||||.|++|+||++....
T Consensus       183 ~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          183 LLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             CEEEEECTTSCEEEEESSCTT
T ss_pred             CEEEEEcCCCEEEEEECCCCC
Confidence            479999999999999996533

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=81.30  E-value=0.5  Score=36.58  Aligned_cols=18  Identities=11%  Similarity=0.508  Sum_probs=16.4

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||.+.
T Consensus       121 ~~l~s~s~Dg~i~vwd~~  138 (410)
T 1vyh_C          121 SVMVSASEDATIKVWDYE  138 (410)
T ss_dssp             SEEEEEESSSCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECC
Confidence            579999999999999984

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=81.30  E-value=0.54  Score=35.08  Aligned_cols=19  Identities=26%  Similarity=0.350  Sum_probs=16.9

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        41 ~~la~g~~dg~v~iw~~~~   59 (447)
T 3dw8_B           41 ELLATGDKGGRVVIFQQEQ   59 (447)
T ss_dssp             SEEEEEETTSEEEEEEECC
T ss_pred             CEEEEEcCCCeEEEEEecC
Confidence            4799999999999999853

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=81.23  E-value=0.51  Score=34.02  Aligned_cols=20  Identities=25%  Similarity=0.484  Sum_probs=17.3

Q ss_pred             hhhheecccceeEeeecCCc
Q 032278            9 TFLVYGRKQKSVNIWFNDMP   28 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~   28 (144)
                      .+|||||.|++|+||.+...
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTC
T ss_pred             cEEEEECCCCEEEEEECCCc
Confidence            47999999999999999653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=81.11  E-value=0.55  Score=33.38  Aligned_cols=19  Identities=16%  Similarity=0.191  Sum_probs=17.0

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus       286 ~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          286 GTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             CCEEEEETTSCEEEEETTT
T ss_pred             CEEEEEccCCeEEEEECCC
Confidence            4799999999999999954

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=80.72  E-value=0.46  Score=34.84  Aligned_cols=19  Identities=5%  Similarity=0.099  Sum_probs=14.1

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        68 ~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C           68 NRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             CCEEEEETTSSEEEC----
T ss_pred             CEEEEEeCCCeEEEEEcCC
Confidence            4799999999999999854

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=80.57  E-value=0.55  Score=33.63  Aligned_cols=18  Identities=17%  Similarity=0.200  Sum_probs=16.4

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||.+.
T Consensus        24 ~~l~~~~~dg~i~iw~~~   41 (379)
T 3jrp_A           24 KRLATCSSDKTIKIFEVE   41 (379)
T ss_dssp             SEEEEEETTSCEEEEEEE
T ss_pred             CEEEEEECCCcEEEEecC
Confidence            479999999999999984

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=80.52  E-value=0.54  Score=35.94  Aligned_cols=19  Identities=26%  Similarity=0.576  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus       136 ~~l~s~~~d~~i~iwd~~~  154 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIEN  154 (393)
T ss_dssp             SEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEcCCCeEEEEECCC
Confidence            4799999999999999843

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=80.43  E-value=0.55  Score=41.69  Aligned_cols=20  Identities=25%  Similarity=0.286  Sum_probs=17.6

Q ss_pred             hhhheecccceeEeeecCCc
Q 032278            9 TFLVYGRKQKSVNIWFNDMP   28 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~   28 (144)
                      .+|||||.|++|++|++...
T Consensus       448 ~~laSgs~DgtVrlWd~~~g  467 (902)
T 2oaj_A          448 TAFITGHSNGSVRIYDASHG  467 (902)
T ss_dssp             EEEEEEETTSEEEEEESSCC
T ss_pred             cEEEEecCCCcEEEEECCCc
Confidence            47999999999999999654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=80.16  E-value=0.55  Score=39.72  Aligned_cols=18  Identities=11%  Similarity=0.043  Sum_probs=16.4

Q ss_pred             hhheecccceeEeeecCC
Q 032278           10 FLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus        10 ~LATGSmDKsV~IWql~~   27 (144)
                      ++|+||.|++|+||++..
T Consensus       297 ~lASgS~DgTIkIWDl~t  314 (356)
T 2w18_A          297 CAAAILTSGTIAIWDLLL  314 (356)
T ss_dssp             EEEEEETTSCEEEEETTT
T ss_pred             EEEEEcCCCcEEEEECCC
Confidence            589999999999999955

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d2f3na1	64	a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat	2e-04
d1v38a_	78	a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (M	3e-04
d1kw4a_	70	a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaste	3e-04
d1b0xa_	72	a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mou	4e-04
d1b4fa_	74	a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens)	0.001
d1ucva_	81	a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal	0.002
d1x40a1	78	a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human	0.004

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]} Length = 64

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (82), Expect = 2e-04
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 37  QDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKE 96
            DVG WLE I+LG +R  F+++ + G +L       T++    +     + G    + + 
Sbjct: 7   FDVGDWLESIHLGEHRDRFEDHEIEGAHL----PALTKEDFVEL--GVTRVGHRENIERA 60

Query: 97  LRRI 100
           LR++
Sbjct: 61  LRQL 64

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 3e-04
 Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 5/65 (7%)

Query: 37  QDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKE 96
           Q +  +LE I+L  Y      NG              E  L  +        D   L   
Sbjct: 13  QTIQEFLERIHLQEYTSTLLLNGYET---LDDLKDIKESHLIELNIADP--EDRARLLSA 67

Query: 97  LRRIK 101
              + 
Sbjct: 68  AESLL 72

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]} Length = 70

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

 Score = 35.2 bits (81), Expect = 3e-04
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 37  QDVGLWLEEIN-LGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCK 95
            DV  ++ E+     Y   F +  ++G+ L  +        +       MK G  + +  
Sbjct: 11  DDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAM------GMKLGPALKIVA 64

Query: 96  ELRRIK 101
           ++  IK
Sbjct: 65  KVESIK 70

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (80), Expect = 4e-04
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNG 62
          +   VG WL+ I +  Y+  F   G   
Sbjct: 3  AVVSVGDWLQAIKMDRYKDNFTAAGYTT 30

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.001
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 9/56 (16%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNG---------EYLEGMSMFTTEQILRFIR 81
          SF  V  WLE I +G Y++ F   G            E +  + +       + + 
Sbjct: 5  SFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILN 60

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.002
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNG 62
          S   VG WL+ I +G YR  F   G + 
Sbjct: 6  SGLTVGDWLDSIRMGRYRDHFAAGGYSS 33

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

 Score = 32.2 bits (73), Expect = 0.004
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 37 QDVGLWLEEINLGGYRQIFKENGVNG 62
           D+  +L  INL  Y   F E+G   
Sbjct: 9  VDIKDFLMSINLEQYLLHFHESGFTT 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1kw4a_	70	Polyhomeotic {Drosophila melanogaster [TaxId: 7227	99.7
d1pk3a1	63	Polycomb protein Scm {Fruit fly (Drosophila melano	99.66
d2f3na1	64	Sh3 and multiple ankyrin repeat domains 3 (Shank3)	99.66
d1wwva1	78	Connector enhancer of kinase suppressor of Ras 1,	99.59
d2d8ca1	85	Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculu	99.47
d1b4fa_	74	EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]	99.4
d1ow5a_	60	Serine/threonine-protein kinase ste11 {Baker's yea	99.38
d1v38a_	78	Sam-domain protein samsn-1 {Mouse (Mus musculus) [	99.35
d1b0xa_	72	EphA4 receptor tyrosine kinases {Mouse (Mus muscul	99.24
d1x40a1	78	Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [Ta	99.2
d1ucva_	81	Ephrin type-A receptor 8, C-terminal domain {Human	99.19
d1oxja1	62	RNA-binding protein Smaug {Drosophila melanogaster	99.07
d1dxsa_	57	C-terminal domain of p73 {Human (Homo sapiens) [Ta	98.45
d1z1va1	70	Ste50p, N-terminal domain {Baker's yeast (Saccharo	96.8
d1sxda_	91	GABP-alpha subunit {Mouse (Mus musculus) [TaxId: 1	96.46
d1sv0c_	82	Modulator of the activity of Ets (MAE, CG15085-PA)	95.75
d1sv0a_	77	Ets DNA-binding protein pokkuri (Yan) {Fruit fly (	95.23
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.21
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	95.16
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	94.81
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	94.69
d1sxea_	97	Transcriptional regulator ERG {Human (Homo sapiens	94.68
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.58
d1rg6a_	67	C-terminal domain of p63 {Human (Homo sapiens) [Ta	94.3
d2jv3a_	110	Ets-1 transcription factor pointed domain {Mouse (	94.13
d1ji7a_	77	Etv6 transcription factor pointed domain (Tel SAM)	94.12
d1tbga_	340	beta1-subunit of the signal-transducing G protein	93.82
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	93.04
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	91.74
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	91.51
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	90.72
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	89.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	89.56
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	89.51
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	89.24
d2h80a1	71	Deleted in Liver Cancer 2, DLC2 {Human (Homo sapie	89.12
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	89.02
d2dkya1	78	Deleted in liver cancer 1 protein, DLC-1 {Human (H	88.8
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	88.77
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	88.39
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	88.25
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	87.22
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	87.2
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	86.46
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	85.6
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	85.32
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	84.04
d1tbga_	340	beta1-subunit of the signal-transducing G protein	82.61
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	80.47

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.70  E-value=5.2e-18  Score=109.91  Aligned_cols=67  Identities=22%  Similarity=0.342  Sum_probs=58.3

Q ss_pred             ccccCCChhHHHHHHHhc-CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           29 HALTLLSFQDVGLWLEEI-NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        29 l~~~~WS~EDVa~WLeei-GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      .++..||+|||+.||+++ |+++|.+.|++|+|||..|+.||    ++-|+-+.  .++.||+++++++++.+|
T Consensus         3 ~pv~~Ws~~dV~~wL~~~~~~~~y~~~F~~~~IdG~~Ll~Lt----~~~L~~~~--~~~~g~r~~i~~~I~~Lk   70 (70)
T d1kw4a_           3 PPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLK----EKHLVNAM--GMKLGPALKIVAKVESIK   70 (70)
T ss_dssp             CCGGGCCHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCC----HHHHHTTT--CCCHHHHHHHHHHHHHHC
T ss_pred             CchhcCCHHHHHHHHHhCCCcHHHHHHHHHcCccHHHHHHcc----HHHHHHHc--CCchHHHHHHHHHHHHhC
Confidence            457899999999999999 79999999999999999999994    44444333  489999999999999886

>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polycomb protein Scm
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=3.8e-17  Score=104.43  Aligned_cols=61  Identities=15%  Similarity=0.389  Sum_probs=53.2

Q ss_pred             CChhHHHHHHHhc--CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278           34 LSFQDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI  100 (144)
Q Consensus        34 WS~EDVa~WLeei--GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~  100 (144)
                      ||+|||++||+.+  |+++|.+.|++|+|||+.|..||    ++-|+-+..  +|.|+++++++.|+++
T Consensus         1 Ws~~dV~~wL~~~~~~~~~y~~~F~~~~IdG~~Ll~Lt----~edL~~~~~--~~~G~r~ki~~~I~~L   63 (63)
T d1pk3a1           1 WTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLN----SEMMMKYMG--LKLGPALKICNLVNKV   63 (63)
T ss_dssp             CCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHTTCC----HHHHHHHHC--CCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHccccHHHHHHHHHHhCcCHHHHHhcC----HHHHHHhcC--CCchHHHHHHHHHHhC
Confidence            9999999999998  89999999999999999999994    444444433  8999999999999864

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=4.8e-17  Score=103.45  Aligned_cols=63  Identities=29%  Similarity=0.466  Sum_probs=55.6

Q ss_pred             cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278           32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI  100 (144)
Q Consensus        32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~  100 (144)
                      ..||++||++||+.+||++|.+.|.+|+|||..|.+||    ++-|+-++.  .+.||+.++++++++|
T Consensus         2 ~~Ws~~~V~~wL~~~gl~~y~~~F~~~~i~g~~L~~l~----~~dL~~lGi--~~~g~r~~il~~i~~L   64 (64)
T d2f3na1           2 QLWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALT----KEDFVELGV--TRVGHRENIERALRQL   64 (64)
T ss_dssp             GGCCHHHHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCC----HHHHHHTTC--CCHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHCCCHHHHHHHHHCCCcHHHhhcCC----HHHHHHcCC--CCHHHHHHHHHHHHhC
Confidence            57999999999999999999999999999999999994    444565665  7999999999998764

>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Connector enhancer of kinase suppressor of Ras 1, CNK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1e-16  Score=106.08  Aligned_cols=71  Identities=10%  Similarity=0.113  Sum_probs=62.6

Q ss_pred             cccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhh
Q 032278           30 ALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLK  106 (144)
Q Consensus        30 ~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~  106 (144)
                      ++..||++||+.||+.+||++|.+.|..|+|||+.|+.|+....    +-++.  .+.||+..++++++.+|-++-+
T Consensus         3 pv~~Wt~~~V~~WL~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL----~~lgI--~~~ghr~~il~~i~~Lk~~~~~   73 (78)
T d1wwva1           3 PVETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSL----EALAV--RSLGHQELILGGVEQLQALSSR   73 (78)
T ss_dssp             CTTTCCTTTHHHHHHHHCHHHHTSCHHHHCCCHHHHTTCCTTTG----GGGTC--CCHHHHHHHHHHHHHHHHHHSC
T ss_pred             ChhhCCHHHHHHHHHHcchHHHHHHHHHcCCCcHHHHHhhHHHH----HHhCC--CCHHHHHHHHHHHHHHHHhccc
Confidence            56899999999999999999999999999999999999965554    33554  8899999999999999987654

>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sphingomyelin synthase 1, SMS1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.3e-14  Score=99.47  Aligned_cols=69  Identities=17%  Similarity=0.222  Sum_probs=59.9

Q ss_pred             cccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHH--HhHhhhccchHHHHHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRF--IRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~--i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      ..++..||+|||++||+.+||++|.+.|  |+|||+.|++|    +++=|+-  ++.  .+.||+-.++.+|+.+|.-.
T Consensus         8 ~~~V~~Ws~~dV~~WL~~~gl~~Y~~~F--~~IdG~~Ll~L----t~~dL~~~~Lgi--~~~~~rk~il~~I~~Lk~~~   78 (85)
T d2d8ca1           8 MKEVVYWSPKKVADWLLENAMPEYCEPL--EHFTGQDLINL----TQEDFKKPPLYR--VSSDNGQRLLDMIETLKMEH   78 (85)
T ss_dssp             CSCCSSCCTTHHHHHHHHTTCTTTTTTT--TTCCHHHHHTC----CHHHHHSSSSSS--CSTTTTHHHHHHHHHHHHHS
T ss_pred             cCChhhCCHHHHHHHHHHCcHHHHHHHH--HhccHHHHHHC----CHHHHhhcCccC--cChhHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999  78999999999    4444442  555  88999999999999998764

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-13  Score=90.50  Aligned_cols=64  Identities=20%  Similarity=0.393  Sum_probs=55.2

Q ss_pred             CCChhHHHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           33 LLSFQDVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        33 ~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      -|+..+|++||+.+||++|.+.|.+|+||| +.|..|    +++.|..++.  .+.||+..++++++.+|-
T Consensus         3 ~~~~~~V~~WL~~lgL~~Y~~~F~~~~idg~~~l~~l----~~~~L~~lGI--~~~ghr~ril~~i~~Lr~   67 (74)
T d1b4fa_           3 YTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQM----MMEDILRVGV--TLAGHQKKILNSIQVMRA   67 (74)
T ss_dssp             CCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTC----CHHHHHHTTC--CCHHHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHCCCHHHHHHHHHcCcCcHHHHHhC----CHHHHHHcCC--CChhHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999 556566    5666777776  899999999999999874

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=1.3e-13  Score=87.79  Aligned_cols=58  Identities=26%  Similarity=0.333  Sum_probs=52.8

Q ss_pred             HHHHHHHhcCcchHHHHhhHcC-cChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           38 DVGLWLEEINLGGYRQIFKENG-VNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        38 DVa~WLeeiGL~qYre~Fk~Nn-IdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      +|++||+++||++|.+.|.+|+ |+|+.|..|    +|+-|..++.  .+.||+.+++++++++|
T Consensus         2 ~V~~wL~~lgL~~Y~~~F~~~~~i~~~~l~~l----~~~dL~~lGI--~~~ghr~ril~~i~~Lk   60 (60)
T d1ow5a_           2 FVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYL----DKDILIALGV--NKIGDRLKILRKSKSFQ   60 (60)
T ss_dssp             HHHHHHHHHSCTHHHHHHHHHTCCCHHHHHHC----CHHHHHHHTC--CCHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHCcCHHHHHHHHHcCCCcHHHHHhC----CHHHHHHcCC--CCHHHHHHHHHHHHHhC
Confidence            7999999999999999999987 999999999    5667777776  89999999999999876

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=4.2e-13  Score=88.80  Aligned_cols=67  Identities=19%  Similarity=0.153  Sum_probs=57.1

Q ss_pred             cccCCChhHHHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278           30 ALTLLSFQDVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV  102 (144)
Q Consensus        30 ~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv  102 (144)
                      ....|.+++|++||+.+||++|.+.|.+|+|+| ..|..|    +++-|..|+.  ++.||+.+++++++.|+-
T Consensus         6 s~~~~~~~~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l----~~~dL~~lGI--~~~~hr~kil~ai~~L~~   73 (78)
T d1v38a_           6 SGRRENHQTIQEFLERIHLQEYTSTLLLNGYETLDDLKDI----KESHLIELNI--ADPEDRARLLSAAESLLS   73 (78)
T ss_dssp             CCCCSSCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTC----CHHHHHHTTT--CCHHHHHHHHHHHHHHHS
T ss_pred             cCCCCCHHHHHHHHHHCCHHHHHHHHHHcCccchHHHccC----CHHHHhHcCC--CCHHHHHHHHHHHHHhhc
Confidence            346799999999999999999999999999999 457777    4555666766  899999999999999873

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=3.8e-12  Score=83.01  Aligned_cols=64  Identities=19%  Similarity=0.304  Sum_probs=54.2

Q ss_pred             ChhHHHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHH
Q 032278           35 SFQDVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        35 S~EDVa~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      +...|++||+.+||++|.+.|.+|+|+| +.|..|    +++-|..++.  .+.||+-+++..|+.+|--+
T Consensus         3 ~v~sV~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~l----~~~dL~~lGI--~~~ghr~ki~~ai~~Lr~~~   67 (72)
T d1b0xa_           3 AVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHM----SQDDLARIGI--TAITHQNKILSSVQAMRTQM   67 (72)
T ss_dssp             SSCCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTC----CHHHHHHHTC--CCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHCCcHHHHHHHHHcCCCcHHHHHHC----CHHHHHHcCC--CCHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999998 567777    5555666765  89999999999999998543

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1e-11  Score=82.58  Aligned_cols=66  Identities=23%  Similarity=0.285  Sum_probs=56.2

Q ss_pred             ccCCChhHHHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHH
Q 032278           31 LTLLSFQDVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA  103 (144)
Q Consensus        31 ~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~  103 (144)
                      ++.|+. ||++||+.+||++|.+.|.+|+|+| +.|.+|    +++.|.-++.  .+.||+.++++.++.++..
T Consensus         4 ~se~~~-dV~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l----~~~dL~~lGI--~~~ghr~kil~~i~~Lr~~   70 (78)
T d1x40a1           4 VSEVNV-DIKDFLMSINLEQYLLHFHESGFTTVKDCAAI----NDSLLQKIGI--SPTGHRRRILKQLQIILSK   70 (78)
T ss_dssp             CSTTCC-BHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGC----CHHHHHHHTC--CCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCh-hHHHHHHHCchHHHHHHHHHcCCCCHHHHHHC----CHHHHHHcCC--CCHHHHHHHHHHHHHHHHh
Confidence            456665 7999999999999999999999986 788888    4566666666  8999999999999998864

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.5e-12  Score=82.83  Aligned_cols=61  Identities=23%  Similarity=0.416  Sum_probs=52.9

Q ss_pred             HHHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHH
Q 032278           38 DVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC  104 (144)
Q Consensus        38 DVa~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~  104 (144)
                      +|++||+.+||++|.+.|.+|+|+| +.|..|    +++-|.-|+.  .+.||+-.++..++.+|...
T Consensus         9 sV~~WL~~lgL~qY~~~F~~~gi~~~~~L~~l----t~~dL~~lGI--~~~ghr~kIl~~i~~Lk~~~   70 (81)
T d1ucva_           9 TVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRM----NAQDVRALGI--TLMGHQKKILGSIQTMRAQL   70 (81)
T ss_dssp             BHHHHHHHTTCGGGHHHHHHTTCCBHHHHTTC----CHHHHHHHTC--CCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHCccHHHHHHHHHcCCchHHHHHhC----CHHHHHHcCC--CCHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999 678888    4555666665  79999999999999998753

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.07  E-value=3.1e-11  Score=78.37  Aligned_cols=60  Identities=25%  Similarity=0.463  Sum_probs=50.1

Q ss_pred             CCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           33 LLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        33 ~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      -|+..||++||+.+||++|.+.|.+|+++  .|..|    +|+-|..++.  .+ ||+.+++.+++.+|
T Consensus         2 ~~g~~~v~~WL~~l~L~~Y~~~F~~~~~d--~l~~l----t~~dL~~lGI--~~-GhRkkil~~I~~Lk   61 (62)
T d1oxja1           2 MVGMSGIGLWLKSLRLHKYIELFKNMTYE--EMLLI----TEDFLQSVGV--TK-GASHKLALCIDKLK   61 (62)
T ss_dssp             CTTCTTHHHHHHHTTCGGGGGGGTTCCHH--HHTTC----CHHHHHHTTC--CH-HHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHCCcHHHHHHHHhCCHH--HHHhC----CHHHHHHcCC--CH-HHHHHHHHHHHHhc
Confidence            37889999999999999999999998886  56666    3455677775  55 99999999999887

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=7.3e-08  Score=61.18  Aligned_cols=54  Identities=15%  Similarity=0.167  Sum_probs=43.5

Q ss_pred             HHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHH
Q 032278           39 VGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRR   99 (144)
Q Consensus        39 Va~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~   99 (144)
                      |++||+.+||++|.+.|.+|+++. +.+.+|    +++-|.-|+.   +=||+-++.|=++.
T Consensus         2 v~~wL~~lgL~~Y~~~F~~~G~~~l~~l~~l----t~eDL~~lGI---~~~hr~kilk~i~~   56 (57)
T d1dxsa_           2 LVSFLTGLGCPNCIEYFTSQGLQSIYHLQNL----TIEDLGALKI---PEQYRMTIWRGLQD   56 (57)
T ss_dssp             HHHHHHHTTCTTSHHHHHTTTCCCHHHHHTC----CHHHHHHTTC---CTTTHHHHHHHHHH
T ss_pred             HHHHHHHCCcHHHHHHHHHccCCcHHHHHHh----hHHHHHHcCC---CHHHHHHHHHHHHh
Confidence            789999999999999999999984 777777    4444555665   44999999987765

>d1z1va1 a.60.1.2 (A:33-102) Ste50p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ste50p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.00057  Score=46.30  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=31.6

Q ss_pred             CCChhHHHHHH-HhcCcch---HHHHhhHcCcChhhhccCc
Q 032278           33 LLSFQDVGLWL-EEINLGG---YRQIFKENGVNGEYLEGMS   69 (144)
Q Consensus        33 ~WS~EDVa~WL-eeiGL~q---Yre~Fk~NnIdG~eLi~Lt   69 (144)
                      .||.|||..|- -++|+++   ...-|++|+|+|.-|.-||
T Consensus         2 ~Ws~deVv~wc~~~L~l~~~d~l~~~lr~n~I~Gd~L~eLt   42 (70)
T d1z1va1           2 QWSVDDVITWCISTLEVEETDPLCQRLRENDIVGDLLPELC   42 (70)
T ss_dssp             CCCHHHHHHHHHHHHCCCTTSHHHHHHHHTTCCTTTGGGCC
T ss_pred             cccHHHHHHHHHHHhCCCCCChHHHHHHHcCCchhhhhHhh
Confidence            69999999995 4557765   7788999999999999886

>d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: GABP-alpha subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.0014  Score=44.86  Aligned_cols=66  Identities=18%  Similarity=0.291  Sum_probs=46.5

Q ss_pred             cCCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278           25 NDMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI  100 (144)
Q Consensus        25 l~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~  100 (144)
                      +..|.+-..||.+||..||+    +.+|+..-  |..=++||+.|-.||++      +|.+|+-  -||.  |-.=|..+
T Consensus        17 l~iP~DP~~WT~~~V~~WL~W~~~ef~L~~v~--~~~F~m~G~~LC~Lt~e------dF~~r~p--~Gdi--L~~hL~~L   84 (91)
T d1sxda_          17 LGIPYDPIHWSTDQVLHWVVWVMKEFSMTDID--LTTLNISGRELCSLNQE------DFFQRVP--RGEI--LWSHLELL   84 (91)
T ss_dssp             TTCCSSGGGCCHHHHHHHHHHHHHHTTCCCSC--SGGGCSCHHHHHHSCHH------HHHHHCT--TCHH--HHHHHHHH
T ss_pred             cCCCCChhhcCHHHHHHHHHHHHHHhCCCCCC--hhhcCCCHHHHHhCCHH------HHHHHCC--ChhH--HHHHHHHH
Confidence            45577889999999999998    55775421  33336999999999765      4667754  4994  55556555


Q ss_pred             HH
Q 032278          101 KV  102 (144)
Q Consensus       101 kv  102 (144)
                      |=
T Consensus        85 k~   86 (91)
T d1sxda_          85 RK   86 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1sv0c_ a.60.1.1 (C:) Modulator of the activity of Ets (MAE, CG15085-PA) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Modulator of the activity of Ets (MAE, CG15085-PA)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.75  E-value=0.003  Score=42.12  Aligned_cols=65  Identities=20%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             CcccccCCChhHHHHHHH------hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278           27 MPHALTLLSFQDVGLWLE------EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI  100 (144)
Q Consensus        27 ~~l~~~~WS~EDVa~WLe------eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~  100 (144)
                      .+.+-..||.++|..||+      +.+++...  +..=++||++|-.||++      +|..|+- .-||.+  -..|+++
T Consensus         7 ip~DP~~Wt~~~V~~WL~~~w~~~ef~l~~~~--~~~F~m~G~~LC~ls~e------dF~~r~P-~~GdiL--~~~L~~~   75 (82)
T d1sv0c_           7 LPLDPRDWTRADVWKWLINMAVSEGLEVTAEL--PQKFPMNGKALCLMSLD------MYLCRVP-VGGKML--YRDFRVR   75 (82)
T ss_dssp             SBSSGGGCCHHHHHHHHHHHHHHHTCCCCTHH--HHTCCSCHHHHHHCCHH------HHHHHCT-TTHHHH--HHHHHHH
T ss_pred             CCcChHhCCHHHHHHHHHHHHHHcCCCCCCCC--hhhcCCCHHHHHcCCHH------HHHhhCC-CchHHH--HHHHHHH
Confidence            466778999999999994      56777642  33335999999999765      4667764 458875  4556655


Q ss_pred             HH
Q 032278          101 KV  102 (144)
Q Consensus       101 kv  102 (144)
                      .-
T Consensus        76 l~   77 (82)
T d1sv0c_          76 LA   77 (82)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1sv0a_ a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Ets DNA-binding protein pokkuri (Yan)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.23  E-value=0.0092  Score=39.21  Aligned_cols=63  Identities=29%  Similarity=0.410  Sum_probs=44.2

Q ss_pred             CcccccCCChhHHHHHHH----hcCcchH-HHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278           27 MPHALTLLSFQDVGLWLE----EINLGGY-RQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK  101 (144)
Q Consensus        27 ~~l~~~~WS~EDVa~WLe----eiGL~qY-re~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k  101 (144)
                      .+.+-..||.++|..||.    +.+++.. ...|   ++||++|-.||++      +|.+|+- ..||.+  -..|+.++
T Consensus         5 ip~DP~~Wt~~~V~~Wl~w~~~ef~L~~i~~~~F---~m~G~~LC~ls~~------dF~~r~p-~~GdiL--~~hL~~L~   72 (77)
T d1sv0a_           5 LPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLF---QMNGKRLCLLTRA------DFGHRCP-GAGDVL--HNVLQMLI   72 (77)
T ss_dssp             SCSSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGG---CSCHHHHTTCCHH------HHHHHST-TTHHHH--HHHHHHHH
T ss_pred             CCCChhhcCHHHHHHHHHHHHHhcCCCCCCcccc---CCCHHHHHcCCHH------HHHhHCC-CcHHHH--HHHHHHHH
Confidence            356778999999999996    4466543 2334   5999999999765      3777764 578865  45555543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.21  E-value=0.0029  Score=41.62  Aligned_cols=18  Identities=17%  Similarity=0.254  Sum_probs=16.3

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||.++
T Consensus        24 ~~L~s~s~Dg~v~iwd~~   41 (342)
T d1yfqa_          24 SLLLITSWDGSLTVYKFD   41 (342)
T ss_dssp             TEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEECCCeEEEEEcc
Confidence            579999999999999983

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0029  Score=41.01  Aligned_cols=19  Identities=21%  Similarity=0.550  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus        26 ~~l~sgs~Dg~i~vWd~~~   44 (293)
T d1p22a2          26 QKIVSGLRDNTIKIWDKNT   44 (293)
T ss_dssp             SEEEEEESSSCEEEEESSS
T ss_pred             CEEEEEeCCCeEEEEECCC
Confidence            4799999999999999854

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0036  Score=41.48  Aligned_cols=19  Identities=16%  Similarity=0.440  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus        28 ~~l~sgs~Dg~i~vWd~~~   46 (342)
T d2ovrb2          28 NRIVSGSDDNTLKVWSAVT   46 (342)
T ss_dssp             TEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCC
Confidence            4799999999999999854

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.81  E-value=0.0041  Score=40.55  Aligned_cols=19  Identities=11%  Similarity=0.471  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus        30 ~~l~s~s~Dg~i~iWd~~~   48 (317)
T d1vyhc1          30 SVMVSASEDATIKVWDYET   48 (317)
T ss_dssp             SEEEEEESSSCEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCC
Confidence            5799999999999999843

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.69  E-value=0.0049  Score=41.07  Aligned_cols=19  Identities=11%  Similarity=0.331  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus        24 ~~l~tgs~Dg~i~vWd~~~   42 (355)
T d1nexb2          24 NYVITGADDKMIRVYDSIN   42 (355)
T ss_dssp             TEEEEEETTTEEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCC
Confidence            4799999999999999843

>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Transcriptional regulator ERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0085  Score=41.12  Aligned_cols=55  Identities=31%  Similarity=0.466  Sum_probs=37.8

Q ss_pred             cccccCCChhHHHHHHH----hcCcchHH-HHhhHcCcChhhhccCcccchHHHHHHHhHhhhcc-chHH
Q 032278           28 PHALTLLSFQDVGLWLE----EINLGGYR-QIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW-GDFI   91 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLe----eiGL~qYr-e~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~-gd~i   91 (144)
                      +.+-..||.++|..||.    +.+|+... ..|.  ++||++|-.||++      +|.+|+ -.+ ||.+
T Consensus        24 P~DP~~Wt~~~V~~WL~W~~~ef~L~~i~~~~F~--~m~G~~LC~lt~e------dF~~r~-p~~~GdiL   84 (97)
T d1sxea_          24 PADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQ--NIDGKELCKMTKD------DFQRLT-PSYNADIL   84 (97)
T ss_dssp             CSSTTSCCHHHHHHHHHHHHHHHTCSSCCGGGST--TCCHHHHTTCCHH------HHTTTS-CHHHHHHH
T ss_pred             CCChhhcCHHHHHHHHHHHHHHcCCCCCChhhcC--CCCHHHHHhcCHH------HHHHHc-CCCchhHH
Confidence            56778999999999996    45665332 1222  6999999999764      466664 234 7753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.58  E-value=0.0058  Score=40.13  Aligned_cols=19  Identities=16%  Similarity=0.300  Sum_probs=17.1

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus       264 ~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         264 KFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             CCEEEEETTSCEEEEETTT
T ss_pred             cEEEEECCCCEEEEEECCC
Confidence            4799999999999999865

>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.0093  Score=39.83  Aligned_cols=45  Identities=9%  Similarity=0.210  Sum_probs=34.8

Q ss_pred             HHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchH
Q 032278           38 DVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDF   90 (144)
Q Consensus        38 DVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~   90 (144)
                      -|+.||..+|+++|-+.|.+.++.-  ..+|-.+|.    +++.+  ||+|+.
T Consensus         5 Si~sfLt~LGc~~~id~F~~q~l~~--v~qLe~~sl----eDL~~--mkIp~~   49 (67)
T d1rg6a_           5 SIVSFLARLGCSSCLDYFTTQGLTT--IYQIEHYSM----DDLAS--LKIPEQ   49 (67)
T ss_dssp             SHHHHHHHTTCCSSHHHHHHHTCCS--GGGGSSCCH----HHHHT--TTCCTH
T ss_pred             hHHHHHHhcChHHHHHHHHHccchh--HHHHhhcCH----HHHHc--CcCcHH
Confidence            4899999999999999999999863  445555554    45666  788864

>d1ji7a_ a.60.1.1 (A:) Etv6 transcription factor pointed domain (Tel SAM) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Etv6 transcription factor pointed domain (Tel SAM)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.021  Score=37.51  Aligned_cols=62  Identities=24%  Similarity=0.211  Sum_probs=41.5

Q ss_pred             cccccCCChhHHHHHHHh----cCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278           28 PHALTLLSFQDVGLWLEE----INLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI  100 (144)
Q Consensus        28 ~l~~~~WS~EDVa~WLee----iGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~  100 (144)
                      +.+-..||.++|..||.-    .+++...  +..=++||++|-.||++      +|.+|+ -.-||.+  -..|+.+
T Consensus         9 ~~DP~~Wt~~~V~~WL~w~~~ef~L~~i~--~~~F~m~G~~LC~lt~~------dF~~r~-p~~GdiL--~~hL~~L   74 (77)
T d1ji7a_           9 RLQPIYWSRDDVAQWLKWAENEFSLRPID--SNTFEMNGKALLLLTKE------DFRYRS-PHSGDEL--YELLQHI   74 (77)
T ss_dssp             CSCGGGCCHHHHHHHHHHHHHHTTCSCCC--TTTTCSCHHHHTTCCHH------HHHHHC-TTTHHHH--HHHHHHH
T ss_pred             CCChhhcCHHHHHHHHHHHHHHcCCCCCC--hhccCCCHHHHHcCCHH------HHHhHC-CCcHHHH--HHHHHHH
Confidence            457789999999999964    4544321  22225999999999765      466776 3568864  4444444

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.82  E-value=0.0096  Score=39.84  Aligned_cols=19  Identities=21%  Similarity=0.338  Sum_probs=16.7

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus        68 ~~l~sgs~Dg~v~iWd~~~   86 (340)
T d1tbga_          68 RLLVSASQDGKLIIWDSYT   86 (340)
T ss_dssp             SEEEEEETTTEEEEEETTT
T ss_pred             CEEEEEECCCceeeeeccc
Confidence            4799999999999999843

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.04  E-value=0.014  Score=39.50  Aligned_cols=18  Identities=17%  Similarity=0.239  Sum_probs=16.2

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||++.
T Consensus        25 ~~l~s~s~Dg~v~vWd~~   42 (299)
T d1nr0a2          25 KTLFSADAEGHINSWDIS   42 (299)
T ss_dssp             SEEEEEETTSCEEEEETT
T ss_pred             CEEEEEcCCCeEEEEECC
Confidence            479999999999999984

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.74  E-value=0.029  Score=37.76  Aligned_cols=19  Identities=11%  Similarity=0.179  Sum_probs=16.7

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus       228 ~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         228 DLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             CEEEEEETTSCEEEEESSC
T ss_pred             CeeEeecCCCeEEEEECCC
Confidence            4799999999999999854

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.51  E-value=0.029  Score=40.60  Aligned_cols=19  Identities=11%  Similarity=0.111  Sum_probs=17.0

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus       302 ~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         302 ETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             SEEEEEETTSEEEEEETTT
T ss_pred             CeeEEECCCCEEEEEECCC
Confidence            4799999999999999955

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.72  E-value=0.03  Score=37.74  Aligned_cols=17  Identities=18%  Similarity=0.321  Sum_probs=15.2

Q ss_pred             hhheecccceeEeeecC
Q 032278           10 FLVYGRKQKSVNIWFND   26 (144)
Q Consensus        10 ~LATGSmDKsV~IWql~   26 (144)
                      -|||||.|++|++|++.
T Consensus        23 ~l~sgs~Dg~v~~Wd~~   39 (287)
T d1pgua2          23 PLISGSYDGRIMEWSSS   39 (287)
T ss_dssp             TTEEEETTSCEEETTTT
T ss_pred             cEEEEeCCCeEEEEECC
Confidence            38999999999999874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.97  E-value=0.049  Score=39.38  Aligned_cols=17  Identities=24%  Similarity=0.442  Sum_probs=15.4

Q ss_pred             hhhheecccceeEeeec
Q 032278            9 TFLVYGRKQKSVNIWFN   25 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql   25 (144)
                      .+|+|||.|++|+||..
T Consensus        25 ~~l~S~S~D~~iriWd~   41 (393)
T d1sq9a_          25 SFTVSCSGDGYLKVWDN   41 (393)
T ss_dssp             SEEEEEETTSEEEEEES
T ss_pred             CEEEEEECCCeEEEEEC
Confidence            37899999999999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.56  E-value=0.055  Score=38.58  Aligned_cols=19  Identities=21%  Similarity=0.380  Sum_probs=16.9

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             SEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCC
Confidence            5799999999999999854

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.059  Score=35.39  Aligned_cols=19  Identities=16%  Similarity=0.459  Sum_probs=16.9

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .++||||.|++|+||.+..
T Consensus       271 ~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         271 NFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             SEEEEEETTSEEEEEETTT
T ss_pred             CeeEEEcCCCEEEEEECCC
Confidence            4789999999999999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.24  E-value=0.057  Score=37.38  Aligned_cols=18  Identities=17%  Similarity=0.316  Sum_probs=15.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+||||| |++|+||++..
T Consensus        75 ~~lasg~-d~~i~iW~~~~   92 (388)
T d1erja_          75 EYLATGC-NKTTQVYRVSD   92 (388)
T ss_dssp             SEEEEEC-BSCEEEEETTT
T ss_pred             CEEEEEe-CCeEEEEEecc
Confidence            4899998 99999999965

>d2h80a1 a.60.1.3 (A:11-81) Deleted in Liver Cancer 2, DLC2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Variant SAM domain
domain: Deleted in Liver Cancer 2, DLC2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.12  E-value=0.079  Score=35.55  Aligned_cols=44  Identities=14%  Similarity=0.196  Sum_probs=30.8

Q ss_pred             hhHHHHHHHhcCcchHHHHhhHcCcC--h----hhhccCcccchHHHHHH
Q 032278           36 FQDVGLWLEEINLGGYRQIFKENGVN--G----EYLEGMSMFTTEQILRF   79 (144)
Q Consensus        36 ~EDVa~WLeeiGL~qYre~Fk~NnId--G----~eLi~Ltk~T~e~il~~   79 (144)
                      .-|-|.||+.-||+||-+.|++...-  =    +.=.-|.+.+.+...|-
T Consensus        11 A~eAC~WLraaGFpqYAqlyEd~~FPidi~~VkkDh~fLd~D~l~sL~RR   60 (71)
T d2h80a1          11 AKEACDWLRAAGFPQYAQLYEDSQFPINIVAVKNDHDFLEKDLVEPLCRR   60 (71)
T ss_dssp             HHHHHHHHHHTTCHHHHHTTTTTCCCSCHHHHHTSCCSSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHhhhccCCcchHHHhcccccccHHHHHHHHHH
Confidence            34779999999999999999987532  1    12234666666666443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.02  E-value=0.061  Score=36.19  Aligned_cols=19  Identities=26%  Similarity=0.363  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||+|++|+||++..
T Consensus       237 ~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         237 VRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             SEEEEEETTSCEEEEETTC
T ss_pred             cceEEEcCCCEEEEEECCC
Confidence            4799999999999999854

>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Variant SAM domain
domain: Deleted in liver cancer 1 protein, DLC-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.80  E-value=0.096  Score=35.64  Aligned_cols=25  Identities=16%  Similarity=0.376  Sum_probs=21.7

Q ss_pred             hhHHHHHHHhcCcchHHHHhhHcCc
Q 032278           36 FQDVGLWLEEINLGGYRQIFKENGV   60 (144)
Q Consensus        36 ~EDVa~WLeeiGL~qYre~Fk~NnI   60 (144)
                      .-|-|.||+.-||+||-+.|++...
T Consensus        16 A~eAC~WLraaGFpqYAqlyEd~~F   40 (78)
T d2dkya1          16 AKEACDWLRATGFPQYAQLYEDFLF   40 (78)
T ss_dssp             HHHHHHHHHHHTCTTHHHHHHTTCC
T ss_pred             HHHHHHHHHHcCChHHHHHhhccCC
Confidence            3477999999999999999998753

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.77  E-value=0.069  Score=37.44  Aligned_cols=17  Identities=18%  Similarity=0.380  Sum_probs=14.8

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+||||| |++|+||.+.
T Consensus        64 ~~latg~-dg~V~iWd~~   80 (337)
T d1gxra_          64 RHVYTGG-KGCVKVWDIS   80 (337)
T ss_dssp             SEEEEEC-BSEEEEEETT
T ss_pred             CEEEEEE-CCEEEEEEcc
Confidence            3799998 8999999984

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.39  E-value=0.095  Score=33.80  Aligned_cols=19  Identities=16%  Similarity=0.441  Sum_probs=16.9

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus       260 ~~l~s~~~dg~i~iwd~~~  278 (317)
T d1vyhc1         260 KFILSCADDKTLRVWDYKN  278 (317)
T ss_dssp             SCEEEEETTTEEEEECCTT
T ss_pred             CEEEEEECCCeEEEEECCC
Confidence            4799999999999999855

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.25  E-value=0.077  Score=37.52  Aligned_cols=17  Identities=24%  Similarity=0.452  Sum_probs=15.8

Q ss_pred             hhhheecccceeEeeec
Q 032278            9 TFLVYGRKQKSVNIWFN   25 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql   25 (144)
                      .+|||||.|++|+||++
T Consensus        78 ~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          78 QYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             CEEEEEETTSEEEEEEE
T ss_pred             CEEEEEeCCCCEEEeee
Confidence            47999999999999988

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.22  E-value=0.059  Score=38.12  Aligned_cols=23  Identities=4%  Similarity=0.160  Sum_probs=18.6

Q ss_pred             hhhheecccceeEeeecCCcccc
Q 032278            9 TFLVYGRKQKSVNIWFNDMPHAL   31 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~~l~~   31 (144)
                      .+|||||.|++|+||.+......
T Consensus       264 ~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         264 QKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCCEE
Confidence            37899999999999998654433

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.20  E-value=0.11  Score=36.99  Aligned_cols=19  Identities=21%  Similarity=0.394  Sum_probs=16.7

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus        71 ~~latg~~dg~i~iwd~~~   89 (311)
T d1nr0a1          71 YYCASGDVHGNVRIWDTTQ   89 (311)
T ss_dssp             SEEEEEETTSEEEEEESSS
T ss_pred             CeEeccccCceEeeeeeec
Confidence            5799999999999999833

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.46  E-value=0.13  Score=33.81  Aligned_cols=19  Identities=26%  Similarity=0.380  Sum_probs=16.3

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||.+..
T Consensus       254 ~~l~~~~~dg~i~iwd~~~  272 (355)
T d1nexb2         254 KFLVSAAADGSIRGWDAND  272 (355)
T ss_dssp             SEEEEECTTSEEEEEETTT
T ss_pred             ceeeeeecccccccccccc
Confidence            3689999999999999854

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.60  E-value=0.13  Score=32.88  Aligned_cols=19  Identities=16%  Similarity=0.506  Sum_probs=16.5

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|++|.+..
T Consensus        66 ~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          66 RVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             SEEEEEETTSCEEEEESSS
T ss_pred             ceeeccccccccccccccc
Confidence            4789999999999999833

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.32  E-value=0.14  Score=35.26  Aligned_cols=19  Identities=21%  Similarity=0.567  Sum_probs=16.8

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+|||||.|++|+||++..
T Consensus       321 ~~l~sg~~dg~i~vwd~~~  339 (388)
T d1erja_         321 EYILSGSKDRGVLFWDKKS  339 (388)
T ss_dssp             CEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEeCCCEEEEEECCC
Confidence            4799999999999999854

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.04  E-value=0.16  Score=36.27  Aligned_cols=18  Identities=11%  Similarity=0.270  Sum_probs=16.2

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||.+.
T Consensus        64 ~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_          64 NRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             TEEEEEETTSCEEEEEEE
T ss_pred             CEEEEEECCCeEEEEeec
Confidence            579999999999999983

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.61  E-value=0.21  Score=33.06  Aligned_cols=19  Identities=21%  Similarity=0.354  Sum_probs=16.6

Q ss_pred             hhhheecccceeEeeecCC
Q 032278            9 TFLVYGRKQKSVNIWFNDM   27 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~~   27 (144)
                      .+||+||.|++|+||.+..
T Consensus       283 ~~l~~g~~dg~i~iwd~~~  301 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             CEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEECCCEEEEEECCC
Confidence            4789999999999999854

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.47  E-value=0.29  Score=34.10  Aligned_cols=18  Identities=22%  Similarity=0.457  Sum_probs=16.2

Q ss_pred             hhhheecccceeEeeecC
Q 032278            9 TFLVYGRKQKSVNIWFND   26 (144)
Q Consensus         9 ~~LATGSmDKsV~IWql~   26 (144)
                      .+|||||.|++|+||++.
T Consensus       110 ~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_         110 CTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             SEEEEEESSSEEEEEECC
T ss_pred             CEEEEeeccccccccccc
Confidence            468999999999999984