Citrus Sinensis ID: 032311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGLSSAG
Secondary Structure (PSIPRED)
cEEEEEEEEccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccccccEEEEEEEEcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEcccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEHcEEcccccEEEEEEEEcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MIACVAVvghqnnplyiqSFTEADDALKLHHIVHCSLDVVdervnnpkksgptlnetflgllyptenykvygYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIdavsnpfhvpgkkitsrTFAERVSTIVKSFGLSSAG
Flexible Loop (DISEMBL)
MIACVAVVghqnnplyIQSFTEADDALKLHHIVHCSLDVVDERvnnpkksgptlnetflglLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAyidavsnpfhvpgKKITSRTFAERVSTIVksfglssag
Low Complexity Region (SEG)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGLSSAG
Disordered region (IsUnstruct)
*IACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVN*******TLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVK********
Disordered Region (DISOPRED)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERV************TFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGLS***
Disordered Region (DISEMBL)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGLSSAG
Disordered Region (DISPRO)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGLS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGLSSAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q54CU7	140	Trafficking protein parti	yes	no	0.930	0.95	0.485	4e-35
B2RYU6	139	Trafficking protein parti	yes	no	0.930	0.956	0.470	1e-32
Q9JME7	139	Trafficking protein parti	yes	no	0.930	0.956	0.470	1e-32
Q5M8X5	139	Trafficking protein parti	yes	no	0.930	0.956	0.477	3e-32
A6H7F7	139	Trafficking protein parti	yes	no	0.930	0.956	0.470	4e-32
Q9UL33	140	Trafficking protein parti	yes	no	0.930	0.95	0.467	1e-31
B5FXJ6	139	Trafficking protein parti	yes	no	0.930	0.956	0.463	3e-31
B5XGE7	139	Trafficking protein parti	N/A	no	0.930	0.956	0.448	1e-30
Q5RBK9	109	Trafficking protein parti	yes	no	0.734	0.963	0.373	1e-19
O13732	148	Uncharacterized protein C	yes	no	0.923	0.891	0.288	4e-11

>sp|Q54CU7|TPC2L_DICDI Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1

 Score =  146 bits (369), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 101/140 (72%), Gaps = 7/140 (5%)

Query: 2   IACVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETF 58
           I CVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + KK     ++ +
Sbjct: 4   IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLP---SDMY 60

Query: 59  LGLLYPTENYKVYGYLTNTKVKFILVTTDL-DVRDADVRNFFRRFHAAYIDAVSNPFHVP 117
           LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++ FF+R    +I+  SNPF+ P
Sbjct: 61  LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFYKP 120

Query: 118 GKKITSRTFAERVSTIVKSF 137
             K+ S+ F + V+ +V S 
Sbjct: 121 NSKVESKKFLQEVTNLVPSL 140

Dictyostelium discoideum (taxid: 44689)

>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 98/136 (72%), Gaps = 3/136 (2%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61  LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
           LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119

Query: 119 KKITSRTFAERVSTIV 134
            +I SR F   V++++
Sbjct: 120 DRIQSRAFDTMVTSMM 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein OS=Mus musculus GN=Trappc2l PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 97/136 (71%), Gaps = 3/136 (2%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           M  C+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61  LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
           LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119

Query: 119 KKITSRTFAERVSTIV 134
            +I SR F   V++++
Sbjct: 120 DRIQSRAFDTMVTSMM 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 96/136 (70%), Gaps = 3/136 (2%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           M  CVAV+  +N PLYI+S T  ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLG 59

Query: 61  LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
           LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119

Query: 119 KKITSRTFAERVSTIV 134
             I SR F   V++++
Sbjct: 120 DPIQSRAFDNTVTSMM 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Xenopus tropicalis (taxid: 8364)

>sp|A6H7F7|TPC2L_BOVIN Trafficking protein particle complex subunit 2-like protein OS=Bos taurus GN=TRAPPC2L PE=2 SV=1

 Score =  136 bits (343), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 97/136 (71%), Gaps = 3/136 (2%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           M  CVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61  LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
           LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119

Query: 119 KKITSRTFAERVSTIV 134
            +I SR F   V++++
Sbjct: 120 DRIQSRAFDGMVTSMM 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q9UL33|TPC2L_HUMAN Trafficking protein particle complex subunit 2-like protein OS=Homo sapiens GN=TRAPPC2L PE=1 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/137 (46%), Positives = 99/137 (72%), Gaps = 4/137 (2%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61  LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
           LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119

Query: 119 KKI-TSRTFAERVSTIV 134
            +I +SR F   V++++
Sbjct: 120 DRIQSSRAFDNMVTSMM 136

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 96/136 (70%), Gaps = 3/136 (2%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           M  C+AV+  +N PLYI+S    ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-VPTENELKFHYTVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61  LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
           LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDIMCNPFYNPG 119

Query: 119 KKITSRTFAERVSTIV 134
            +I SR F   V++++
Sbjct: 120 DRIHSRAFDTMVNSMM 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Taeniopygia guttata (taxid: 59729)

>sp|B5XGE7|TPC2L_SALSA Trafficking protein particle complex subunit 2-like protein OS=Salmo salar GN=trappc2l PE=2 SV=1

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/136 (44%), Positives = 93/136 (68%), Gaps = 3/136 (2%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           M  C+AV+  +N PLYI+S     + LK H+ VH SLDVV+E+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-VPVQNELKFHYTVHTSLDVVEEKISAVGKAMADQRELYLG 59

Query: 61  LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
           LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H ++ D + NPF+ PG
Sbjct: 60  LLYPTEDYKVYGYVTNSKVKFVIVVDSSNTSLRDNEIRSMFRKLHNSFTDVMCNPFYNPG 119

Query: 119 KKITSRTFAERVSTIV 134
             I S+ F   VS ++
Sbjct: 120 DTIQSKAFDSMVSAMM 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Salmo salar (taxid: 8030)

>sp|Q5RBK9|TPC2L_PONAB Trafficking protein particle complex subunit 2-like protein OS=Pongo abelii GN=TRAPPC2L PE=3 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 29/134 (21%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTENKLKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
           LLYPTE+YK+                            FR+ H +Y D + NPF+ PG +
Sbjct: 60  LLYPTEDYKM----------------------------FRKLHNSYTDVMCNPFYNPGDR 91

Query: 121 ITSRTFAERVSTIV 134
           I SR F   V++++
Sbjct: 92  IQSRAFDNMVTSMM 105

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Pongo abelii (taxid: 9601)

>sp|O13732|YDOC_SCHPO Uncharacterized protein C15A10.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15A10.12c PE=4 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 10/142 (7%)

Query: 5   VAVVGHQNNPLYIQSFTEADDAL--KLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLL 62
           +++ G ++  LY++     +  L  +  ++   SLDV+++ VN+ +++    N+ FLGLL
Sbjct: 9   LSIAGPKDEQLYLEIIDPKEKHLLARYQYLGELSLDVINDLVNDGERTS---NDCFLGLL 65

Query: 63  YPTENYKVYGYLTNTKVKFILVTT--DLDVRDADVRNFFRRFHAAYIDAVSNPFHV---P 117
              E+   Y + +NTKVKFIL     D  V++ ++R   RR +  +  AV NPF +   P
Sbjct: 66  GVEEDISTYAFYSNTKVKFILAVKAPDYVVKETEIRQLLRRIYTIHTHAVCNPFSMDLTP 125

Query: 118 GKKITSRTFAERVSTIVKSFGL 139
               TS  F E +  ++  + +
Sbjct: 126 ETLKTSIYFKESLHQLISDWNI 147

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
225428065	143	PREDICTED: trafficking protein particle	1.0	1.0	0.979	3e-77
356568553	143	PREDICTED: trafficking protein particle	1.0	1.0	0.965	5e-76
224105143	143	predicted protein [Populus trichocarpa]	1.0	1.0	0.972	6e-76
356531840	143	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.958	1e-75
357507945	143	Trafficking protein particle complex sub	1.0	1.0	0.944	1e-74
449454229	143	PREDICTED: trafficking protein particle	0.993	0.993	0.943	2e-74
326521478	181	predicted protein [Hordeum vulgare subsp	1.0	0.790	0.860	3e-70
242050020	143	hypothetical protein SORBIDRAFT_02g03142	0.965	0.965	0.898	4e-70
238013536	142	unknown [Zea mays] gi|414888280|tpg|DAA6	0.965	0.971	0.891	1e-69
357159725	143	PREDICTED: trafficking protein particle	0.965	0.965	0.876	4e-69

>gi|225428065|ref|XP_002279626.1| PREDICTED: trafficking protein particle complex subunit 2-like protein [Vitis vinifera] gi|297744593|emb|CBI37855.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 140/143 (97%), Positives = 142/143 (99%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFH+AY+DAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHSAYVDAVSNPFHVPGKK 120

Query: 121 ITSRTFAERVSTIVKSFGLSSAG 143
           ITSRTFAERVSTIVKSFGLSSAG
Sbjct: 121 ITSRTFAERVSTIVKSFGLSSAG 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568553|ref|XP_003552475.1| PREDICTED: trafficking protein particle complex subunit 2-like protein-like [Glycine max]

 Score =  288 bits (737), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 138/143 (96%), Positives = 140/143 (97%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGP LNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
           LLYP ENYKVYGYLTNTKVKFILVTTDLDV+DADVRNFFRRFHAAY+DAVSNPFHVPGKK
Sbjct: 61  LLYPIENYKVYGYLTNTKVKFILVTTDLDVKDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSRTFAERVSTIVKSFGLSSAG 143
           ITSRTFAERVSTIVKSFGLSSAG
Sbjct: 121 ITSRTFAERVSTIVKSFGLSSAG 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105143|ref|XP_002313700.1| predicted protein [Populus trichocarpa] gi|118482540|gb|ABK93191.1| unknown [Populus trichocarpa] gi|118483113|gb|ABK93465.1| unknown [Populus trichocarpa] gi|222850108|gb|EEE87655.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (736), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 139/143 (97%), Positives = 140/143 (97%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSG TLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGLTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAY+DAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSRTFAERVSTIVKSFGLSSAG 143
           ITSRTFAERVS IVKSFGLSSAG
Sbjct: 121 ITSRTFAERVSNIVKSFGLSSAG 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531840|ref|XP_003534484.1| PREDICTED: uncharacterized protein LOC100527601 [Glycine max]

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/143 (95%), Positives = 140/143 (97%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGP LNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
           LLYP ENYKVYGYLTNTKVKFILVTTDLDV+DADVRNFFRRFH+AY+DAVSNPFHVPGKK
Sbjct: 61  LLYPIENYKVYGYLTNTKVKFILVTTDLDVKDADVRNFFRRFHSAYVDAVSNPFHVPGKK 120

Query: 121 ITSRTFAERVSTIVKSFGLSSAG 143
           ITSRTFAERVSTIVKSFGLSSAG
Sbjct: 121 ITSRTFAERVSTIVKSFGLSSAG 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507945|ref|XP_003624261.1| Trafficking protein particle complex subunit 2-like protein [Medicago truncatula] gi|355499276|gb|AES80479.1| Trafficking protein particle complex subunit 2-like protein [Medicago truncatula]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/143 (94%), Positives = 138/143 (96%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGP LNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
           LLYP ENYKVYGYLTNTKVKFILVTTD+DV+DADVRNFFRRFHAAY+DAVSNPFHVPGKK
Sbjct: 61  LLYPIENYKVYGYLTNTKVKFILVTTDIDVKDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSRTFAERVSTIVKSFGLSSAG 143
           ITSRTFAERVSTIVKSFG SSA 
Sbjct: 121 ITSRTFAERVSTIVKSFGFSSAA 143

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454229|ref|XP_004144858.1| PREDICTED: trafficking protein particle complex subunit 2-like protein-like [Cucumis sativus] gi|449519966|ref|XP_004167005.1| PREDICTED: trafficking protein particle complex subunit 2-like protein-like [Cucumis sativus]

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/142 (94%), Positives = 139/142 (97%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAY+DAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSRTFAERVSTIVKSFGLSSA 142
           ITS+TFAE VSTIVKSFG SSA
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSA 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326521478|dbj|BAK00315.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  269 bits (687), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/143 (86%), Positives = 134/143 (93%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLY+QSFTEADDALKLHH+VHCSLDV+DERVNNPK+S PTLNETFLG
Sbjct: 39  MIVCVAVVGHQNNPLYLQSFTEADDALKLHHVVHCSLDVIDERVNNPKRSAPTLNETFLG 98

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKF++VTTDLDV+DAD RNFFR+FHAAY+DAVSNPFHVPGKK
Sbjct: 99  LLYPTENYKVYGYLTNTKVKFLMVTTDLDVKDADARNFFRKFHAAYVDAVSNPFHVPGKK 158

Query: 121 ITSRTFAERVSTIVKSFGLSSAG 143
           I SR+F  RVSTIVKSFG  + G
Sbjct: 159 IASRSFGARVSTIVKSFGSGTVG 181

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242050020|ref|XP_002462754.1| hypothetical protein SORBIDRAFT_02g031420 [Sorghum bicolor] gi|241926131|gb|EER99275.1| hypothetical protein SORBIDRAFT_02g031420 [Sorghum bicolor]

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 124/138 (89%), Positives = 132/138 (95%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLY+QSFTEADDALKLHHIVHCSLDV+DERVNNPK+S PTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYLQSFTEADDALKLHHIVHCSLDVIDERVNNPKRSAPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDV+DAD RNFFR+FHAAY+DAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVKDADARNFFRKFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSRTFAERVSTIVKSFG 138
           I SR+F  RVSTIVKSFG
Sbjct: 121 IASRSFGARVSTIVKSFG 138

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238013536|gb|ACR37803.1| unknown [Zea mays] gi|414888280|tpg|DAA64294.1| TPA: hypothetical protein ZEAMMB73_808869 [Zea mays]

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/138 (89%), Positives = 132/138 (95%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLY+QSFTEADDALKLHHIVHCSLDV+DERV+NPK+S PTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYLQSFTEADDALKLHHIVHCSLDVIDERVSNPKRSAPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDV+DAD RNFFR+FHAAY+DAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVKDADARNFFRKFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSRTFAERVSTIVKSFG 138
           I SR+F  RVSTIVKSFG
Sbjct: 121 IASRSFGARVSTIVKSFG 138

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357159725|ref|XP_003578539.1| PREDICTED: trafficking protein particle complex subunit 2-like protein-like isoform 1 [Brachypodium distachyon]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 121/138 (87%), Positives = 132/138 (95%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLY+QSFTEADDALKLHH+VHCSLDV+DERVNNPK++ PTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYLQSFTEADDALKLHHVVHCSLDVIDERVNNPKRNAPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKF++VTTDLDV+DAD RNFFR+FHAAY+DAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFLMVTTDLDVKDADARNFFRKFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSRTFAERVSTIVKSFG 138
           I SR+F  RVSTIVKSFG
Sbjct: 121 IASRSFGARVSTIVKSFG 138

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2051457	140	AT2G20930 "AT2G20930" [Arabido	0.979	1.0	0.878	1.1e-64
DICTYBASE|DDB_G0292690	140	trappc2l "trafficking protein	0.923	0.942	0.496	4.6e-34
RGD|1304906	139	Trappc2l "trafficking protein	0.930	0.956	0.470	5.4e-31
MGI|MGI:1916295	139	Trappc2l "trafficking protein	0.930	0.956	0.470	6.9e-31
UNIPROTKB|A6H7F7	139	TRAPPC2L "Trafficking protein	0.930	0.956	0.470	1.8e-30
UNIPROTKB|Q9UL33	140	TRAPPC2L "Trafficking protein	0.930	0.95	0.467	2.3e-30
UNIPROTKB|E1BYR2	139	TRAPPC2L "Uncharacterized prot	0.930	0.956	0.463	3e-30
UNIPROTKB|H3BP13	241	TRAPPC2L "Trafficking protein	0.958	0.568	0.471	3e-30
UNIPROTKB|E2RB28	140	TRAPPC2L "Uncharacterized prot	0.930	0.95	0.459	1.6e-29
UNIPROTKB|F1S6M0	141	TRAPPC2L "Uncharacterized prot	0.930	0.943	0.442	1.2e-28

TAIR|locus:2051457 AT2G20930 "AT2G20930" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 123/140 (87%), Positives = 132/140 (94%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             MI CVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDV++ERVNNPKKSG TLNE FLG
Sbjct:     1 MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVIEERVNNPKKSGTTLNEAFLG 60

Query:    61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
             LLYPT NYKVYGYLTNTKVKFILVTTDLDVRD DVR+FFR+FHAAY+DAVSNPFHVPGKK
Sbjct:    61 LLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRSFFRKFHAAYVDAVSNPFHVPGKK 120

Query:   121 ITSRTFAERVSTIVKSFGLS 140
             ITSRTFA+ VS IV S+GL+
Sbjct:   121 ITSRTFAQTVSNIVGSYGLN 140

GO:0003674 "molecular_function" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

DICTYBASE|DDB_G0292690 trappc2l "trafficking protein particle complex subunit 2-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 69/139 (49%), Positives = 102/139 (73%)

Query:     2 IACVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETF 58
             I CVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + KK  P+  + +
Sbjct:     4 IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKL-PS--DMY 60

Query:    59 LGLLYPTENYKVYGYLTNTKVKFILVTTDL-DVRDADVRNFFRRFHAAYIDAVSNPFHVP 117
             LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++ FF+R    +I+  SNPF+ P
Sbjct:    61 LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFYKP 120

Query:   118 GKKITSRTFAERVSTIVKS 136
               K+ S+ F + V+ +V S
Sbjct:   121 NSKVESKKFLQEVTNLVPS 139

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

RGD|1304906 Trappc2l "trafficking protein particle complex 2-like" [Rattus norvegicus (taxid:10116)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 64/136 (47%), Positives = 98/136 (72%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119

Query:   119 KKITSRTFAERVSTIV 134
              +I SR F   V++++
Sbjct:   120 DRIQSRAFDTMVTSMM 135

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

MGI|MGI:1916295 Trappc2l "trafficking protein particle complex 2-like" [Mus musculus (taxid:10090)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 64/136 (47%), Positives = 97/136 (71%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119

Query:   119 KKITSRTFAERVSTIV 134
              +I SR F   V++++
Sbjct:   120 DRIQSRAFDTMVTSMM 135

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|A6H7F7 TRAPPC2L "Trafficking protein particle complex subunit 2-like protein" [Bos taurus (taxid:9913)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 64/136 (47%), Positives = 97/136 (71%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  CVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119

Query:   119 KKITSRTFAERVSTIV 134
              +I SR F   V++++
Sbjct:   120 DRIQSRAFDGMVTSMM 135

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q9UL33 TRAPPC2L "Trafficking protein particle complex subunit 2-like protein" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/137 (46%), Positives = 99/137 (72%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119

Query:   119 KKI-TSRTFAERVSTIV 134
              +I +SR F   V++++
Sbjct:   120 DRIQSSRAFDNMVTSMM 136

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E1BYR2 TRAPPC2L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 63/136 (46%), Positives = 96/136 (70%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S    ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-VPTENELKFHYTVHTSLDVVDEKISAMGKAMVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDIMCNPFYNPG 119

Query:   119 KKITSRTFAERVSTIV 134
              +I SR F   V++++
Sbjct:   120 DRIHSRAFDNMVNSMM 135

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|H3BP13 TRAPPC2L "Trafficking protein particle complex subunit 2-like protein" [Homo sapiens (taxid:9606)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 66/140 (47%), Positives = 97/140 (69%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119

Query:   119 KKITSRTFAERVSTIVKSFG 138
              +I SR     VS  + S G
Sbjct:   120 DRIQSRWALLSVSCHLLSVG 139

GO:0005622 "intracellular" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2RB28 TRAPPC2L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 63/137 (45%), Positives = 97/137 (70%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  CVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKV-YGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVP 117
             LLYPTE+YK+ YGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ P
Sbjct:    60 LLYPTEDYKIKYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNP 119

Query:   118 GKKITSRTFAERVSTIV 134
             G +I SR F   V++++
Sbjct:   120 GDRIHSRAFDSMVTSMM 136

GO:0005737 "cytoplasm" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1S6M0 TRAPPC2L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 61/138 (44%), Positives = 96/138 (69%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  CVAV+  +N PLYI+S    ++ L+ H+++H SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCVAVIAKENYPLYIRS-VPTENELQFHYMLHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYK--VYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHV 116
             LLYPTE+YK   YGY+TN+KVKF++V  +++  +RD ++R+ FR+ H++Y D + NPF+ 
Sbjct:    60 LLYPTEDYKRCSYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHSSYTDVMCNPFYT 119

Query:   117 PGKKITSRTFAERVSTIV 134
             PG +I SR F   V+ ++
Sbjct:   120 PGDRIQSRAFDSMVTAMM 137

GO:0005737 "cytoplasm" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54CU7	TPC2L_DICDI	No assigned EC number	0.4857	0.9300	0.95	yes	no
Q9UL33	TPC2L_HUMAN	No assigned EC number	0.4671	0.9300	0.95	yes	no
A6H7F7	TPC2L_BOVIN	No assigned EC number	0.4705	0.9300	0.9568	yes	no
B2RYU6	TPC2L_RAT	No assigned EC number	0.4705	0.9300	0.9568	yes	no
Q5M8X5	TPC2L_XENTR	No assigned EC number	0.4779	0.9300	0.9568	yes	no
Q9JME7	TPC2L_MOUSE	No assigned EC number	0.4705	0.9300	0.9568	yes	no
B5FXJ6	TPC2L_TAEGU	No assigned EC number	0.4632	0.9300	0.9568	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036140001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (143 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027363001	SubName- Full=Putative uncharacterized protein (Chromosome chr19 scaffold_4, whole genome shotg [...] (186 aa)				•	•		•		0.539

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam04628	127	pfam04628, Sedlin_N, Sedlin, N-terminal conserved	8e-51
COG5603	136	COG5603, TRS20, Subunit of TRAPP, an ER-Golgi teth	7e-09
pfam04099	135	pfam04099, Sybindin, Sybindin-like family	1e-05
COG5122	134	COG5122, TRS23, Transport protein particle (TRAPP)	0.002

>gnl|CDD|218183 pfam04628, Sedlin_N, Sedlin, N-terminal conserved region

 Score =  157 bits (400), Expect = 8e-51
 Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 11/134 (8%)

Query: 7   VVGHQNNPLYIQSFTEADDALK----LHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLL 62
           ++G ++NPLY Q F+              I H SLD+V+E            N  +LGL+
Sbjct: 1   IIGKKDNPLYEQEFSSEGKTSIPKHLNQFIAHASLDIVEELQWKT-------NNMYLGLV 53

Query: 63  YPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKIT 122
               +  V GY+TNT +KFIL+      RD D++ FFR  H  YI  + NPF+ P   I 
Sbjct: 54  DSFNDLAVSGYVTNTHIKFILLHDSSTERDDDIKQFFREVHELYIKTLMNPFYEPNDPIR 113

Query: 123 SRTFAERVSTIVKS 136
           S  F  +V  + K 
Sbjct: 114 SPAFDAKVRRLAKK 127

Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region. Length = 127

>gnl|CDD|227890 COG5603, TRS20, Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

 Score = 50.7 bits (121), Expect = 7e-09
 Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 16/142 (11%)

Query: 1   MIACVAVVGHQNNPLYIQSFT---EADDALKLHH----IVHCSLDVVDERVNNPKKSGPT 53
           M   +A++G ++NP+Y + +    +  D          I+H SLD+V            +
Sbjct: 1   MGEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQ-------WS 53

Query: 54  LNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNP 113
           +N ++   L    + ++  Y+  + +KF+ +  +      + R+F +  H  Y   + +P
Sbjct: 54  VNTSYFDCLDSFGDLRISAYIMPSGMKFLFIHQNQS--RKNARSFLQEVHELYAKTLMSP 111

Query: 114 FHVPGKKITSRTFAERVSTIVK 135
           F+ P + I S+ F + V    +
Sbjct: 112 FYEPDEPIRSQAFDDGVREAAR 133

Length = 136

>gnl|CDD|146632 pfam04099, Sybindin, Sybindin-like family

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN-FFRRFHAAYID-AVSNPFHVPG 118
               T+ +K++   T T +KF+LVT   D      R+   R+++  Y D  + NPF+   
Sbjct: 60  ESLETDTFKLHCLQTLTGIKFVLVT---DPGTGPNRDSLLRKYYELYSDYVLKNPFYSLE 116

Query: 119 KKITSRTFAERVSTIVKS 136
             I    F E++   V+S
Sbjct: 117 MPIRCELFDEKLDQYVRS 134

Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Length = 135

>gnl|CDD|227451 COG5122, TRS23, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 65  TENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVS-NPFHVPGKKITS 123
             N+ +  + T T  KF+ V      R  +     ++ ++ Y D V+ NPF+ P   I  
Sbjct: 64  FRNFVMTIFQTTTGTKFVFVAEK---RTVNALFQLQKIYSLYSDYVTKNPFYSPEMPIQC 120

Query: 124 RTFAERVSTIVKS 136
             F E +  + + 
Sbjct: 121 SLFDEHLKRMFEG 133

Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	100.0
KOG3444	121	consensus Uncharacterized conserved protein [Funct	100.0
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	100.0
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	100.0
KOG3487	139	consensus TRAPP 20 K subunit [Intracellular traffi	100.0
KOG3369	199	consensus Transport protein particle (TRAPP) compl	100.0
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	99.96
KOG3368	140	consensus Transport protein particle (TRAPP) compl	99.95
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	96.13
KOG0861	198	consensus SNARE protein YKT6, synaptobrevin/VAMP s	93.5
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	80.25
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	80.19

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=100.00  E-value=7.8e-41  Score=238.22  Aligned_cols=123  Identities=46%  Similarity=0.858  Sum_probs=104.1

Q ss_pred             EEeCCCCeeEEecCCCch-------hHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCce
Q 032311            7 VVGHQNNPLYIQSFTEAD-------DALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKV   79 (143)
Q Consensus         7 Ii~~~~~ply~~~~~~~~-------~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~   79 (143)
                      |||++|+|||+++++..+       +.+ +++++|+|||+||+++|..      +.++|||+|+++++|+||||+|+||+
T Consensus         1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l-~~~~~h~sLD~iee~~~~~------~~~~yLg~l~~~~~~~vygyvT~t~~   73 (132)
T PF04628_consen    1 IIGPNNNPLYIRSFPSEKESSSSDARHL-YQFIAHSSLDVIEEKLWKS------SSDMYLGLLDPFEDYKVYGYVTNTGI   73 (132)
T ss_dssp             EE-TTS-EEEEEEE--ST-CGHHHHHHH-HHHHHHHHHHHHHHCCHCS------SSCSEEEEEEEETTEEEEEEETTT--
T ss_pred             CCCCCCcceEEEecCCCcccccchHHHH-HHHHHHHHHHHHHHHHhhc------ccccccCceehhhhHHHHhhhccCce
Confidence            899999999999998662       234 9999999999999999961      25899999999999999999999999


Q ss_pred             EEEEEEc--CCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHH
Q 032311           80 KFILVTT--DLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKS  136 (143)
Q Consensus        80 Kfvl~~~--~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~  136 (143)
                      ||||+++  ....++++||+||++||++|++++|||||++++||+|+.|+++|++++++
T Consensus        74 Kfvl~~~~~~~~~~d~~ik~fF~~vh~~Y~~~~~NPF~~~~~~I~S~~Fd~~v~~l~~k  132 (132)
T PF04628_consen   74 KFVLVHDMSDNSIRDEDIKQFFKEVHELYVKALCNPFYQPGTPIKSPKFDSRVRALAKK  132 (132)
T ss_dssp             EEEEEECGGG-S--HHHHHHHHHHHHHHHHHHHTSTTCGCT-HHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEecccCCcchHHHHHHHHHHHHHHHHHccCCCCCCCCCcCCHHHHHHHHHHhcC
Confidence            9999998  22358999999999999999999999999999999999999999999986

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>KOG3444 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.2e-35  Score=196.74  Aligned_cols=118  Identities=57%  Similarity=0.968  Sum_probs=110.3

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceE
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK   80 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~K   80 (143)
                      |+.|++|++++|+|+|++.+++.+++|++++..|+|||+|+|+.+.+.|...++++.|||+|+++++|++|||.|||.+|
T Consensus         1 m~v~~av~g~kn~~lyi~s~t~~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtNTkVK   80 (121)
T KOG3444|consen    1 MLVCLAVAGPKNEPLYIESITPKEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTNTKVK   80 (121)
T ss_pred             CEEEEEEEcCCCCccEEEecCcHHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEeccEEE
Confidence            89999999999999999999998999999999999999999999876666666789999999999999999999999999


Q ss_pred             EEEEEcCC--CcCcHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 032311           81 FILVTTDL--DVRDADVRNFFRRFHAAYIDAVSNPFHVPG  118 (143)
Q Consensus        81 fvl~~~~~--~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~  118 (143)
                      ||++++..  .++|.+||++|+.+|-+|.+..|||||-++
T Consensus        81 FIlvvdssd~avreteiRsv~r~~h~l~td~~~npfy~pg  120 (121)
T KOG3444|consen   81 FILVVDSSDYAVRETEIRSVFRILHLLYTDLSCNPFYLPG  120 (121)
T ss_pred             EEEEEcCCcceehhHHHHHHHHHHHHHHHHheecceeccC
Confidence            99999765  378999999999999999999999999875

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=100.00  E-value=2.5e-34  Score=207.05  Aligned_cols=131  Identities=21%  Similarity=0.338  Sum_probs=95.6

Q ss_pred             EEEEEEEeCCCCeeEEecCCCc----------hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEE
Q 032311            2 IACVAVVGHQNNPLYIQSFTEA----------DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVY   71 (143)
Q Consensus         2 i~~l~Ii~~~~~ply~~~~~~~----------~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~   71 (143)
                      |++|+|+||+|++||.++|...          |+.+.+..++| ||+.|..+++|.....+..+...+.. ++++.|++|
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~-sl~~i~~klsp~~~~~~~~~~~g~~~-~~T~~yklh   78 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLH-SLKAIASKLSPVDSKPNEPGSSGFES-FETDTYKLH   78 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHH-HHHHHHHHT-SSSSSS-SSS--SEEE-EEESS-EEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHH-HHHHHHHHhCCCCcccccccceeEEE-EEeCCEEEE
Confidence            7999999999999999999753          55677778888 99999999998532221112344544 589999999


Q ss_pred             EEEecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh-hCCCCCCCCCCcchhHHHHHHHHHHH
Q 032311           72 GYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAV-SNPFHVPGKKITSRTFAERVSTIVKS  136 (143)
Q Consensus        72 ~y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v-~NPFy~~~~~I~s~~F~~~v~~~~~~  136 (143)
                      +|+|+||+|||+++|+.  .......+++.+|++|++|| +||||+++|||+|+.||++|++++++
T Consensus        79 ~~eT~TGlKFvl~td~~--~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l~~~~~~  142 (142)
T PF04099_consen   79 CFETPTGLKFVLITDPN--VPSLRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKLDQYVKS  142 (142)
T ss_dssp             EEE-TTS-EEEEEE-TT--CCHCHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHHHHHHHC
T ss_pred             EEEcCcCcEEEEEecCC--CccHHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHHHHHHhC
Confidence            99999999999999984  23556777888889999999 99999999999999999999999873

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=100.00  E-value=3.4e-34  Score=195.88  Aligned_cols=128  Identities=23%  Similarity=0.478  Sum_probs=116.2

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCc-----hhHHHH--HHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEE
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEA-----DDALKL--HHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGY   73 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~-----~~~l~l--~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y   73 (143)
                      |-..++|||++|+|+|+++|++.     .+..++  +|++|+|||+++.+.|..       +.+|+++++.+.+.++.+|
T Consensus         1 M~~y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsv-------N~~Y~~~~d~f~~l~IsAY   73 (136)
T COG5603           1 MGEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSV-------NTSYFDCLDSFGDLRISAY   73 (136)
T ss_pred             CCceEEEEecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHh-------hhHHHHHHHhhCCeEEEEE
Confidence            56789999999999999999854     223443  599999999999999953       4799999999999999999


Q ss_pred             EecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHHh
Q 032311           74 LTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSF  137 (143)
Q Consensus        74 ~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~  137 (143)
                      ++++|+||++++...  ..+++|.||++||++|++.++||||++++||+|++||.+||++.+++
T Consensus        74 i~pSgmkf~~iH~n~--s~~N~rsF~qevHely~ktLmspfy~~~~pirsqafd~~Vr~~ar~~  135 (136)
T COG5603          74 IMPSGMKFLFIHQNQ--SRKNARSFLQEVHELYAKTLMSPFYEPDEPIRSQAFDDGVREAARVC  135 (136)
T ss_pred             EccCCceEEEEeccc--hhhhHHHHHHHHHHHHHHHhhCcccCCCccccchhhhhhHHHHHHhh
Confidence            999999999999875  78899999999999999999999999999999999999999999875

>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-33  Score=195.61  Aligned_cols=129  Identities=30%  Similarity=0.529  Sum_probs=117.7

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCc-------hhHHHH-HHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEE
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEA-------DDALKL-HHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYG   72 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~-------~~~l~l-~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~   72 (143)
                      |-.+++|||+.++|+|+-+|+.+       ++...| +|++|+|||++||..|..       +.+|||.+++++++-|++
T Consensus         1 m~~yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~-------snmYLktVDkfne~~VSA   73 (139)
T KOG3487|consen    1 MTAYFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTT-------SNMYLKTVDKFNELFVSA   73 (139)
T ss_pred             CceEEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHhhcceeEEE
Confidence            67899999999999999999843       233344 799999999999999942       479999999999999999


Q ss_pred             EEecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 032311           73 YLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFG  138 (143)
Q Consensus        73 y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~  138 (143)
                      |+|++++||++++..+  .+++++.||+++|++|++.++||||++++||+|+.||.+++.+.+++-
T Consensus        74 yvTas~i~f~mlh~~~--~~~~ik~Ffqev~elyik~lmnpFy~~~dpirs~afd~kv~~~~rkhl  137 (139)
T KOG3487|consen   74 YVTASHIRFIMLHINR--ADDNIKLFFQEVHELYIKTLMNPFYEINDPIRSPAFDHKVRGLARKHL  137 (139)
T ss_pred             EEccCcEEEEEEeecc--ccccHHHHHHHHHHHHHHHHhCcccccCCccccHHHHHHHHHHHHHHh
Confidence            9999999999999986  689999999999999999999999999999999999999999999873

>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-33  Score=203.39  Aligned_cols=102  Identities=23%  Similarity=0.348  Sum_probs=93.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceEEEEEEcCCCcCcHHHHHHHHHHH
Q 032311           24 DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFH  103 (143)
Q Consensus        24 ~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~  103 (143)
                      |+.+.+++++| |+++|.++++|.++++|.       .+.++++|++|||+|.||+|||+++++   ....++.+|+++|
T Consensus        95 NEkL~las~fh-sl~aI~~qlsp~~ksSGi-------e~LetdtF~l~~~QTlTG~KFVvis~~---~~~~aD~lLrKiY  163 (199)
T KOG3369|consen   95 NEKLILASSFH-SLFAISTQLSPEPKSSGI-------EVLETDTFTLHIFQTLTGTKFVVIAEP---GTQGADSLLRKIY  163 (199)
T ss_pred             cchhhhhhhhc-chhheeeccCCCCCCCce-------EEEEeccEEEEEEEccCCcEEEEEecC---CchhHHHHHHHHH
Confidence            56788999999 999999999999887643       345899999999999999999999998   6788999999999


Q ss_pred             HHHHHhh-hCCCCCCCCCCcchhHHHHHHHHHHH
Q 032311          104 AAYIDAV-SNPFHVPGKKITSRTFAERVSTIVKS  136 (143)
Q Consensus       104 ~~Y~~~v-~NPFy~~~~~I~s~~F~~~v~~~~~~  136 (143)
                      ++|+||| +||||+++|||+|++||++++.++++
T Consensus       164 elYsDyvlKNPfYSlEMPIRc~lFDe~lk~~le~  197 (199)
T KOG3369|consen  164 ELYSDYVLKNPFYSLEMPIRCELFDEKLKFLLES  197 (199)
T ss_pred             HHHHHHhhcCCccCcccceeHHHhhHHHHHHHhh
Confidence            9999999 99999999999999999999999875

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=99.96  E-value=5.8e-29  Score=169.48  Aligned_cols=124  Identities=19%  Similarity=0.318  Sum_probs=106.3

Q ss_pred             EEEEEEEeCCCCeeEEecCCCc------hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEe
Q 032311            2 IACVAVVGHQNNPLYIQSFTEA------DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLT   75 (143)
Q Consensus         2 i~~l~Ii~~~~~ply~~~~~~~------~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T   75 (143)
                      +..+.||||+|++||+|+|+..      |+.|.+.+++| +..+|..++.|-++++|      + ++..++++.++-|+|
T Consensus         3 ve~~~iINksGglifqref~~~et~lnsneyLiLastlh-gV~aI~tq~~p~~gssg------~-~~l~~~~f~m~I~qT   74 (134)
T COG5122           3 VEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLH-GVSAILTQTIPLPGSSG------R-LVLYFRNFVMTIFQT   74 (134)
T ss_pred             eeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechh-hhhhhhhhcccCCCCCc------e-EEEEeccEEEEEEEe
Confidence            4578999999999999999754      67888999999 99999999988654432      2 344789999999999


Q ss_pred             cCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh-hCCCCCCCCCCcchhHHHHHHHHHHH
Q 032311           76 NTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAV-SNPFHVPGKKITSRTFAERVSTIVKS  136 (143)
Q Consensus        76 ~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v-~NPFy~~~~~I~s~~F~~~v~~~~~~  136 (143)
                      .||+|||++++.   +..+.+-=++++|++|+||| +||||+++|||+|.+||++++++++.
T Consensus        75 ~TG~kFV~~~~k---~t~na~~ql~kiY~lYsdYV~knPfys~EMPI~c~lFde~lkrm~e~  133 (134)
T COG5122          75 TTGTKFVFVAEK---RTVNALFQLQKIYSLYSDYVTKNPFYSPEMPIQCSLFDEHLKRMFEG  133 (134)
T ss_pred             cCCcEEEEEecC---CchhHHHHHHHHHHHHHHHhhcCCCCCcccceehhhhhHHHHHHhcC
Confidence            999999999976   44455555899999999999 99999999999999999999998764

>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.9e-27  Score=164.87  Aligned_cols=125  Identities=25%  Similarity=0.415  Sum_probs=112.2

Q ss_pred             EEEEEEEeCCCCeeEEecCCCc-------hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEE
Q 032311            2 IACVAVVGHQNNPLYIQSFTEA-------DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL   74 (143)
Q Consensus         2 i~~l~Ii~~~~~ply~~~~~~~-------~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~   74 (143)
                      |++++|+||+|+|||.++|..+       +++.+|.|.+-+||..+.+++++..     ..+.++.  ++|+.|++|.|+
T Consensus         3 iy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d-----~k~~f~s--y~Ts~Yklhfye   75 (140)
T KOG3368|consen    3 IYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGD-----VKDGFLS--YKTSKYKLHFYE   75 (140)
T ss_pred             EEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCC-----cccCeeE--EeeceeEEEEEE
Confidence            7899999999999999999865       5679999988889999999998642     2344443  689999999999


Q ss_pred             ecCceEEEEEEcCCCcCcHHHHHHHHHHHH-HHHHhh-hCCCCC--CCCCCcchhHHHHHHHHHHH
Q 032311           75 TNTKVKFILVTTDLDVRDADVRNFFRRFHA-AYIDAV-SNPFHV--PGKKITSRTFAERVSTIVKS  136 (143)
Q Consensus        75 T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~-~Y~~~v-~NPFy~--~~~~I~s~~F~~~v~~~~~~  136 (143)
                      ||||+||||++|+   +..++|++|++||. +|+++| +||.++  +++||+|+.|...+++.++.
T Consensus        76 Tptglk~vl~Tdp---k~~~ir~vLq~IYs~lyVE~Vvknpl~~~~~~~~i~~E~fr~~ld~~vrs  138 (140)
T KOG3368|consen   76 TPTGLKFVLNTDP---KAGSIRDVLQYIYSHLYVEYVVKNPLYTYDPGSPIRSELFRKILDRFVRS  138 (140)
T ss_pred             cCCCcEEEEecCC---CcccHHHHHHHHHHHHHHHHHHcCcccccCCCCccchHHHHHHHHhhhcc
Confidence            9999999999998   88999999999996 999999 999999  89999999999999998873

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.13  E-value=0.29  Score=34.60  Aligned_cols=96  Identities=14%  Similarity=0.304  Sum_probs=59.5

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceE
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK   80 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~K   80 (143)
                      ||.++.|+|++|++++.|-|...+..-+ +-....-......+   .  +.   .    ..+...+++++ .|....++-
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~-~~~~~~~~~~~~~~---~--~~---~----~~i~~~~~~~~-vy~~~~dl~   66 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDVSEEER-QKLFEKFIKKKSSR---N--SK---Q----SPIFEHDNYRI-VYKRYSDLY   66 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTSTSHHH-HHHHHHHHHHHHTS---S--SS---S----TSEEEETTEEE-EEEEETTEE
T ss_pred             CEEEEEEEcCCCCEEEehhcCCccHHHH-HHHHHHHHHHHHhc---c--cc---c----ceeeeccccee-eeEeeccEE
Confidence            9999999999999999998854322111 11222111222211   1  10   0    12334556554 787888999


Q ss_pred             EEEEEcCCCcCcHHHHHHHHHHHHHHHHhhh
Q 032311           81 FILVTTDLDVRDADVRNFFRRFHAAYIDAVS  111 (143)
Q Consensus        81 fvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~  111 (143)
                      |+++++.. .++-.+-++++.+.+++-++..
T Consensus        67 ~~~v~~~~-eNel~~~e~l~~~v~~l~~~~~   96 (141)
T PF01217_consen   67 FVVVGDEN-ENELLLLEFLHRLVEVLDDYFG   96 (141)
T ss_dssp             EEEEESST-SBHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEeecc-cchHHHHHHHHHhhhhhhhhhc
Confidence            99999852 2344567788888888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.50  E-value=2.2  Score=31.90  Aligned_cols=95  Identities=13%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             EEEEEEEeCCCCeeEE--ecCCCc-----hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEE
Q 032311            2 IACVAVVGHQNNPLYI--QSFTEA-----DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL   74 (143)
Q Consensus         2 i~~l~Ii~~~~~ply~--~~~~~~-----~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~   74 (143)
                      |+++.|+.+.....-+  ..+.-.     ...-.-.|+.+ .-..+.++..+..++          + .+.++|.+|+|+
T Consensus         3 i~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F-~sktvaeRt~~g~rq----------s-vk~~~Y~~h~yv   70 (198)
T KOG0861|consen    3 IYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTF-ISKTVAERTGPGQRQ----------S-VKHEEYLVHVYV   70 (198)
T ss_pred             eEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHH-HHHHHHHhcCccccc----------c-cccceeEEEEEE
Confidence            7888998884433222  211111     11112245555 445667766654322          2 367799999999


Q ss_pred             ecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHh
Q 032311           75 TNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDA  109 (143)
Q Consensus        75 T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~  109 (143)
                      -+.|+--|+++|+. +..-..-.++.+|-+-|..-
T Consensus        71 rndgL~~V~~~D~e-YP~rvA~tLL~kvld~~~~k  104 (198)
T KOG0861|consen   71 RNDGLCGVLIADDE-YPVRVAFTLLNKVLDEFTTK  104 (198)
T ss_pred             ecCCeeEEEEecCc-CchhHHHHHHHHHHHHHhhc
Confidence            99999999999963 33444566777777777443

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=80.25  E-value=12  Score=23.63  Aligned_cols=47  Identities=13%  Similarity=0.280  Sum_probs=36.5

Q ss_pred             ceecCCeEEEEEEecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh
Q 032311           62 LYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAV  110 (143)
Q Consensus        62 l~~~~~~~v~~y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v  110 (143)
                      .++.+++.+|.+. ..|+-++++++. .......=.||++|++.|....
T Consensus        18 s~~~~~~~fh~~~-~~~i~~~citd~-~~~~r~aF~fL~~i~~~F~~~~   64 (83)
T PF13774_consen   18 SYESGNYVFHYLV-EDGIAYLCITDK-SYPKRVAFAFLEEIKQEFIQTY   64 (83)
T ss_dssp             EEEETTEEEEEEE-ETTEEEEEEEET-TS-HHHHHHHHHHHHHHHHHHC
T ss_pred             EEEECCEEEEEEE-cCCeEEEEEEcC-CCCcchHHHHHHHHHHHHHHHc
Confidence            3567888888888 999999999996 3345556778899998887753

...

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=80.19  E-value=34  Score=28.72  Aligned_cols=88  Identities=9%  Similarity=0.254  Sum_probs=50.3

Q ss_pred             EEEEEeCCCCeeEEecCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceEEEE
Q 032311            4 CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIL   83 (143)
Q Consensus         4 ~l~Ii~~~~~ply~~~~~~~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~Kfvl   83 (143)
                      -+.|++..|.|||.+ +++++.-.-+..++++=+..+++.            ..-|..+ ..++.++. |..-+.+-+|.
T Consensus        13 h~fIlS~AGKPIysr-~G~e~~l~~~~g~~~aiiS~~~~~------------~d~l~~i-~~~~~~iv-fl~r~pl~lv~   77 (415)
T PF03164_consen   13 HFFILSSAGKPIYSR-YGDEDKLSSLMGVIQAIISFFQSN------------GDELRSI-RAGDHRIV-FLNRGPLILVA   77 (415)
T ss_pred             eEEEECCCCceeEEe-cCChHHHHHHHHHHHHHHHHHHhC------------CCcEEEE-EeCCEEEE-EEecCCEEEEE
Confidence            478999999999998 565332233333444333333321            1113233 34555555 55577777777


Q ss_pred             EEcCCCcCcHHHHHHHHHHHHHHH
Q 032311           84 VTTDLDVRDADVRNFFRRFHAAYI  107 (143)
Q Consensus        84 ~~~~~~~~~~~i~~~f~~i~~~Y~  107 (143)
                      ++... -.+..++.-|+-+|..-+
T Consensus        78 vS~~~-e~~~~l~~qL~~ly~qil  100 (415)
T PF03164_consen   78 VSKTG-ESESQLRKQLDYLYSQIL  100 (415)
T ss_pred             EcCCc-CCHHHHHHHHHHHHHHHH
Confidence            77642 135567777777775443

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
2j3w_A	142	The Crystal Structure Of The Bet3-Trs31-Sedlin Comp		3e-08
1h3q_A	140	Crystal Sturcture Of Sedl At 2.4 Angstroms Resoluti		4e-08

>pdb|2J3W|A Chain A, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 142

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 7   VVGHQNNPLYIQSF------TEADDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
           +VGH +NP++   F         DD   L+  I H +LD+VDE +    N   K+    N
Sbjct: 11  IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 70
Query: 56  ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPF 114
           E F           V  ++T   ++FI++    DVR  D ++NFF   +  YI    NPF
Sbjct: 71  EWF-----------VSAFVTAGHMRFIMLH---DVRQEDGIKNFFTDVYDLYIKFAMNPF 116
Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
           + P   I S  F  +V  + K   LS
Sbjct: 117 YEPNSPIRSSAFDRKVQFLGKKHLLS 142

>pdb|1H3Q|A Chain A, Crystal Sturcture Of Sedl At 2.4 Angstroms Resolution Length = 140

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 18/142 (12%)
Query: 7   VVGHQNNPLYIQSF------TEADDALKLHH-IVHCSLDVVDERVNNPKKSGPTLNETFL 59
           +VGH +NP++   F         DD   L+  I H +LD+VDE +          N  +L
Sbjct: 9   IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENM-------WLSNNMYL 61
Query: 60  GLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPFHVPG 118
             +     + V  ++T   ++FI++    DVR  D ++NFF   +  YI    NPF+ P 
Sbjct: 62  KTVDKFNEWFVSAFVTAGHMRFIMLH---DVRQEDGIKNFFTDVYDLYIKFAMNPFYEPN 118
Query: 119 KKITSRTFAERVSTIVKSFGLS 140
             I S  F  +V  + K   LS
Sbjct: 119 SPIRSSAFDRKVQFLGKKHLLS 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	2e-41
2j3w_A	142	Sedlin, trafficking protein particle complex prote	4e-38
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	3e-18
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	2e-13
3cue_A	219	Transport protein particle 23 kDa subunit; membran	9e-09
3cue_C	159	Transport protein particle 18 kDa subunit; membran	2e-05

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae} Length = 162

 Score =  134 bits (339), Expect = 2e-41
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 18/151 (11%)

Query: 2   IACVAVVGHQNNPLYIQSF----TEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNET 57
              V+++   + P+ I        E +D LK + + + SLD  +  +          ++ 
Sbjct: 10  PCFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLD---SKP 66

Query: 58  FLGLLYPTENYKVYGYL-TNTKVKFILV-----TTDLDVRDADVRNFFRRFHAAYIDAVS 111
            L  ++  E   V+  L   T +K ++       +  D     +   F      YI    
Sbjct: 67  LLKSIFQLEGVSVFAMLIKQTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKC 126

Query: 112 NPFHVPG-----KKITSRTFAERVSTIVKSF 137
           NP  V G      K   R F E   +     
Sbjct: 127 NPLLVSGDEKSIIKSLERKFDELFISTEVEL 157

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142

 Score =  125 bits (315), Expect = 4e-38
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 16/146 (10%)

Query: 2   IACVAVVGHQNNPLYIQSFT-------EADDALKLHHIVHCSLDVVDERVNNPKKSGPTL 54
                +VGH +NP++   F        + D       I H +LD+VDE +          
Sbjct: 6   SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENM-------WLS 58

Query: 55  NETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPF 114
           N  +L  +     + V  ++T   ++FI++       +  ++NFF   +  YI    NPF
Sbjct: 59  NNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQ--EDGIKNFFTDVYDLYIKFAMNPF 116

Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
           + P   I S  F  +V  + K   LS
Sbjct: 117 YEPNSPIRSSAFDRKVQFLGKKHLLS 142

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score = 76.3 bits (187), Expect = 3e-18
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 9   GHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENY 68
            +  +  + +    +++ L L  + H    +  +       SG  +          T+ +
Sbjct: 91  NYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEM--------LETDTF 142

Query: 69  KVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYID-AVSNPFHVPGKKITSRTFA 127
           K++ Y T T +KF+++    D R A + +  R+ +  Y D A+ NPF+     I    F 
Sbjct: 143 KLHCYQTLTGIKFVVLA---DPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFD 199

Query: 128 ERVSTIVKSF 137
           + +   ++  
Sbjct: 200 QNLKLALEVA 209

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Length = 145

 Score = 62.6 bits (152), Expect = 2e-13
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAA-YID-AVSNPFHVPG 118
           L + T  YK++ Y T T +K ++ T   D+    +R+     ++A Y++  V NP    G
Sbjct: 62  LSFQTSRYKLHYYETPTGIKVVMNT---DLGVGPIRDVLHHIYSALYVEFVVKNPLCPLG 118

Query: 119 KKITSRTFAERVSTIVKSFGLSSA 142
           + + S  F  R+ + V+S    SA
Sbjct: 119 QTVQSELFRSRLDSYVRSLPFFSA 142

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 219

 Score = 50.8 bits (120), Expect = 9e-09
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 22/95 (23%)

Query: 65  TENYKVYGYLTNTKVKFILVT---------------------TDLDVRDADVRNFFRRFH 103
           T+ + ++ Y T T +KF+ ++                     +  ++      NF R+ +
Sbjct: 124 TDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVY 183

Query: 104 AAYID-AVSNPFHVPGKKITSRTFAERVSTIVKSF 137
             Y D  + +P +     I S  F E+V  +V++ 
Sbjct: 184 CLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 159

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 18/89 (20%)

Query: 63  YPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAA-YID-AVSNPF------ 114
             T  Y+V+ Y T + + F+L++   D +        +  ++  Y+    +N        
Sbjct: 70  ISTGKYRVHTYCTASGLWFVLLS---DFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFA 126

Query: 115 -------HVPGKKITSRTFAERVSTIVKS 136
                      +KIT+R F   + + +  
Sbjct: 127 ENENEMRGQGTRKITNRNFISVLESFLAP 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2j3w_A	142	Sedlin, trafficking protein particle complex prote	100.0
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	100.0
3cue_A	219	Transport protein particle 23 kDa subunit; membran	100.0
3cue_C	159	Transport protein particle 18 kDa subunit; membran	100.0
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	100.0
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	100.0
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	96.46
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	96.28
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	95.47
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	94.82
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	93.61
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	91.73
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	91.51
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	90.42
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	90.04
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	86.9

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=100.00  E-value=6.5e-42  Score=245.51  Aligned_cols=129  Identities=27%  Similarity=0.455  Sum_probs=117.4

Q ss_pred             EEEEEEEeCCCCeeEEecCCCc-----hhH--HHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEE
Q 032311            2 IACVAVVGHQNNPLYIQSFTEA-----DDA--LKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL   74 (143)
Q Consensus         2 i~~l~Ii~~~~~ply~~~~~~~-----~~~--l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~   74 (143)
                      ++|++||||+|+|||+++|++.     +++  +..++++|++||+++++.|..       .++|||.++++++|+||||+
T Consensus         6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~-------~~~~l~~~~~~~~y~v~~~~   78 (142)
T 2j3w_A            6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLS-------NNMYLKTVDKFNEWFVSAFV   78 (142)
T ss_dssp             CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGC-------SCSEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCC-------CcceeEeeecccceEEEEEE
Confidence            5999999999999999999764     233  445688999999999998731       47999999999999999999


Q ss_pred             ecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHHhCC
Q 032311           75 TNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGL  139 (143)
Q Consensus        75 T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~~  139 (143)
                      |+||+|||++++++  +++++|++|++||++|+++++||||++++||+|+.||++|++++++|.+
T Consensus        79 T~tg~Kfvl~~d~~--~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~l~  141 (142)
T 2j3w_A           79 TAGHMRFIMLHDVR--QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLL  141 (142)
T ss_dssp             CTTCCEEEEEESSC--CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred             cCCCcEEEEEeCCC--CcHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHHhcc
Confidence            99999999999984  5999999999999999999999999999999999999999999999964

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=100.00  E-value=2.3e-39  Score=233.01  Aligned_cols=130  Identities=18%  Similarity=0.270  Sum_probs=112.2

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCc-------hhHHH-HHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEE
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEA-------DDALK-LHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYG   72 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~-------~~~l~-l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~   72 (143)
                      |++|++||||+|+|||.++|+..       +++.+ +++++| ||+.|.+++++..      +.+++.++ ++++|++||
T Consensus         2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~-Sl~~i~~klsp~~------~~~~~~~~-~t~~ykl~~   73 (145)
T 2j3t_C            2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLF-SIRSFVSKMSPLD------MKDGFLSF-QTSRYKLHY   73 (145)
T ss_dssp             CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHH-HHHHHHHHHCSSC------CSSCEEEE-ECSSCEEEE
T ss_pred             eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHH-HHHHHHHHhCCCC------CCCceEEE-ecCCEEEEE
Confidence            58999999999999999999642       34455 455666 8999999988642      23556555 899999999


Q ss_pred             EEecCceEEEEEEcCCCcCcHHHHHHHHHHH-HHHHHhh-hCCCCCCCCCCcchhHHHHHHHHHHHhCCCC
Q 032311           73 YLTNTKVKFILVTTDLDVRDADVRNFFRRFH-AAYIDAV-SNPFHVPGKKITSRTFAERVSTIVKSFGLSS  141 (143)
Q Consensus        73 y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~-~~Y~~~v-~NPFy~~~~~I~s~~F~~~v~~~~~~~~~~~  141 (143)
                      |+|+||+||||++++   +++++|++|++|| ++|++|| |||||++++||+|+.||++|+++++++..++
T Consensus        74 ~~T~TgiKFvl~td~---~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~~f~  141 (145)
T 2j3t_C           74 YETPTGIKVVMNTDL---GVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSLPFFS  141 (145)
T ss_dssp             EECTTSCEEEEEECT---TCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTSTTCC
T ss_pred             EEcCCCCEEEEEecC---CcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhCccch
Confidence            999999999999998   7889999999999 8999988 8999999999999999999999999986543

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-35  Score=222.14  Aligned_cols=136  Identities=21%  Similarity=0.325  Sum_probs=113.3

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCc------hhHHHHHHHHHHHHHHHHhhcCCCCCCC-----------------------
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEA------DDALKLHHIVHCSLDVVDERVNNPKKSG-----------------------   51 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~------~~~l~l~~~~~~sLd~i~~~~~~~~~~~-----------------------   51 (143)
                      +|++|+||||+|++||.|+|...      ||++.+..++| +|++|..++.|.....                       
T Consensus         2 ~i~sl~IiNk~GglIY~r~~~~~~~~l~snd~l~lag~lh-sv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~~   80 (219)
T 3cue_A            2 AIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLH-GVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRS   80 (219)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSCCCCSCHHHHHHHHHHHH-HHHHHHHHTCCSCC-----------CCCCCSCCC-----
T ss_pred             eeEEEEEEeCCCCEEeehhhccCcCCCCcchhhhhhhhhH-HHHHHHhhcCCCccccccccccccccccccccccccccc
Confidence            58999999999999999999743      78899999999 9999999999853100                       


Q ss_pred             ----------------------CC---------CcccccccceecCCeEEEEEEecCceEEEEEEcCCC-----------
Q 032311           52 ----------------------PT---------LNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLD-----------   89 (143)
Q Consensus        52 ----------------------~~---------~~~~ylg~l~~~~~~~v~~y~T~Tg~Kfvl~~~~~~-----------   89 (143)
                                            ++         -....|. +.++++|++|||+|+||+||||++++..           
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~-~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~  159 (219)
T 3cue_A           81 DTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLR-QLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTD  159 (219)
T ss_dssp             -----------------------CCSCCSCCCCCCSSSCC-EEEESSCEEEEEECTTSCEEEEEESSCC-----------
T ss_pred             ccccccccccccccccccccccccccccccccccCCCceE-EEEeCCEEEEEEEcCCCCEEEEEecCCCccccccccccc
Confidence                                  00         0112332 3579999999999999999999999742           


Q ss_pred             ----------cCcHHHHHHHHHHHHHHHHhh-hCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 032311           90 ----------VRDADVRNFFRRFHAAYIDAV-SNPFHVPGKKITSRTFAERVSTIVKSFG  138 (143)
Q Consensus        90 ----------~~~~~i~~~f~~i~~~Y~~~v-~NPFy~~~~~I~s~~F~~~v~~~~~~~~  138 (143)
                                ++|+++|++|++||++|++|| |||||.++|||+|+.||++|+++++++.
T Consensus       160 ~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~~  219 (219)
T 3cue_A          160 KPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENLQ  219 (219)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHHC
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhcC
Confidence                      112889999999999999988 7999999999999999999999999863

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-36  Score=218.74  Aligned_cols=128  Identities=18%  Similarity=0.267  Sum_probs=108.4

Q ss_pred             CEEEEEEEeCCCCeeEEecCCC-------------chhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCC
Q 032311            1 MIACVAVVGHQNNPLYIQSFTE-------------ADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTEN   67 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~-------------~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~   67 (143)
                      +|+||+||||+|+|||.++|..             .+++.++.+.++.||+.|.+++++...     .+.+  ..+++++
T Consensus         2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~-----~~~f--~~~~T~~   74 (159)
T 3cue_C            2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSV-----KNDI--RSISTGK   74 (159)
T ss_dssp             CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSS-----CCCE--EEEECSS
T ss_pred             eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCC-----CCCe--EEEeeCC
Confidence            5899999999999999999953             144566665445599999999987421     2344  3468999


Q ss_pred             eEEEEEEecCceEEEEEEcCCCcCcHHHHHHHHHHHH-HHHHhh-hCC-----CCCCC--------CCCcchhHHHHHHH
Q 032311           68 YKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHA-AYIDAV-SNP-----FHVPG--------KKITSRTFAERVST  132 (143)
Q Consensus        68 ~~v~~y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~-~Y~~~v-~NP-----Fy~~~--------~~I~s~~F~~~v~~  132 (143)
                      |++|||+|+||+||||++|+   ++.++|++|++||+ +|++|| |||     ||+++        +||+|++||++|++
T Consensus        75 ykl~~~eT~TgiKFvl~td~---~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~  151 (159)
T 3cue_C           75 YRVHTYCTASGLWFVLLSDF---KQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLES  151 (159)
T ss_dssp             CBEEEECCSSCCEEEEECCS---SSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHH
T ss_pred             EEEEEEEeCCCCEEEEEeCC---CcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHHHHHH
Confidence            99999999999999999998   79999999999997 999988 999     99999        99999999999999


Q ss_pred             HHHHhC
Q 032311          133 IVKSFG  138 (143)
Q Consensus       133 ~~~~~~  138 (143)
                      +++++.
T Consensus       152 ~~~~~~  157 (159)
T 3cue_C          152 FLAPMV  157 (159)
T ss_dssp             HTSCC-
T ss_pred             HHHhcc
Confidence            998764

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=100.00  E-value=2.2e-35  Score=223.43  Aligned_cols=124  Identities=21%  Similarity=0.322  Sum_probs=109.9

Q ss_pred             EEEeCCCCeeEEecCCCc---hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceEEE
Q 032311            6 AVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI   82 (143)
Q Consensus         6 ~Ii~~~~~ply~~~~~~~---~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~Kfv   82 (143)
                      .|+||+|+|||++.|.+.   ++.+.+.+++| |||+|+++++|..++      ..+. ..++++|++|||+|+||+|||
T Consensus        85 ~iigk~N~PLyir~f~~~l~sn~~L~lag~lh-SLd~i~~klsp~~~s------~g~~-~~~T~~ykl~~y~T~TgiKFV  156 (219)
T 2j3t_D           85 YLGNPANYPVSIRFGRPRLTSNEKLMLASMFH-SLFAIGSQLSPEQGS------SGIE-MLETDTFKLHCYQTLTGIKFV  156 (219)
T ss_dssp             HTTCGGGCSEEEEEECCCCCHHHHHHHHHHHH-HHHHHHHHTCSSSSC------CSCS-EEEESSCEEEEEECTTSCEEE
T ss_pred             eeecCCCCceEEEecCCCCChhHHHHHHHHHH-HHHHHHHHhCCCCCC------CCee-EEecCceEEEEEEcCCCCEEE
Confidence            478999999999999866   56677888999 999999999975322      2343 358999999999999999999


Q ss_pred             EEEcCCCcCcHHHHHHHHHHHHHHHHhh-hCCCCCCCCCCcchhHHHHHHHHHHHhCCC
Q 032311           83 LVTTDLDVRDADVRNFFRRFHAAYIDAV-SNPFHVPGKKITSRTFAERVSTIVKSFGLS  140 (143)
Q Consensus        83 l~~~~~~~~~~~i~~~f~~i~~~Y~~~v-~NPFy~~~~~I~s~~F~~~v~~~~~~~~~~  140 (143)
                      |++++   +++++|++|++||++|+++| |||||++++||+|+.||++|+++++++...
T Consensus       157 Lltd~---~~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~~~~~  212 (219)
T 2j3t_D          157 VLADP---RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKA  212 (219)
T ss_dssp             EEECT---TCCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHHHTTS
T ss_pred             EEecC---CchHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHHhhcc
Confidence            99998   89999999999999999997 899999999999999999999999999764

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-34  Score=207.92  Aligned_cols=114  Identities=22%  Similarity=0.385  Sum_probs=97.9

Q ss_pred             EEEEEEeCCCCeeEEecCCCc----hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEE-ecC
Q 032311            3 ACVAVVGHQNNPLYIQSFTEA----DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL-TNT   77 (143)
Q Consensus         3 ~~l~Ii~~~~~ply~~~~~~~----~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~-T~T   77 (143)
                      .+++||||+|.|||++.++..    +++|+++|++|+|||+||+++..+  ++++ .++|||+|+++++++||||+ |+|
T Consensus        11 ~FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~--~s~~-~~~~LglL~~~e~~~VYGy~iTnt   87 (162)
T 3pr6_A           11 CFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEW--HSLD-SKPLLKSIFQLEGVSVFAMLIKQT   87 (162)
T ss_dssp             SEEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCC--CCSS-SSCCCEEEEEETTEEEEEEECTTT
T ss_pred             eEEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhc--cccc-cccccceEeecCCeEEEEEEEcCC
Confidence            378999999999999999765    467999999999999999999432  2222 25799999999999999998 999


Q ss_pred             ceEEEEEEcCC---CcCc--HHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 032311           78 KVKFILVTTDL---DVRD--ADVRNFFRRFHAAYIDAVSNPFHVPGK  119 (143)
Q Consensus        78 g~Kfvl~~~~~---~~~~--~~i~~~f~~i~~~Y~~~v~NPFy~~~~  119 (143)
                      |+|||++++.+   +.+|  ++||++|++||++|++++|||||.+++
T Consensus        88 ~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l~NPFy~~~d  134 (162)
T 3pr6_A           88 GLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLLVSGD  134 (162)
T ss_dssp             CCEEEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHHHHTCTTGGGSC
T ss_pred             ceEEEEEEccCCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence            99999999863   3567  899999999999999999999999884

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=96.46  E-value=0.12  Score=35.75  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=60.4

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCc--hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCc
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEA--DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTK   78 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~--~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg   78 (143)
                      ||.++.|+|++|.++..|-|.+.  +...++.-.++       .++.... ..   ..    .+...++++ +.|..-.+
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~-------~~v~~~~-~~---~~----~~~~~~~~~-~vy~~~~~   64 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVH-------AVVTVRD-AK---HT----NFVEFRNFK-IIYRRYAG   64 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHH-------HHHHTCC-TT---SC----SEEEETTEE-EEEEEETT
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHH-------HHHhcCC-CC---CC----CEEEECCEE-EEEEEECC
Confidence            89999999999999999988743  22233222222       2222111 00   11    223455544 56777788


Q ss_pred             eEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhC
Q 032311           79 VKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSN  112 (143)
Q Consensus        79 ~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~N  112 (143)
                      +-|+++++. +.++-.+-.+++.+.++.-+|..|
T Consensus        65 Lyfv~~~~~-~~N~l~~le~L~~~ve~l~~yf~~   97 (142)
T 2vgl_S           65 LYFCICVDV-NDNNLAYLEAIHNFVEVLNEYFHN   97 (142)
T ss_dssp             EEEEEEECT-TSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             EEEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHcc
Confidence            999999985 234555677888888888888654

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=96.28  E-value=0.17  Score=35.68  Aligned_cols=95  Identities=11%  Similarity=0.073  Sum_probs=59.4

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCchh--HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCc
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEADD--ALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTK   78 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~~~--~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg   78 (143)
                      ||.++.|+|++|.++..|.|.....  ..++.--++       .++......    ..+    +...++++ +.|..-.+
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~-------~~i~~~~~~----~~~----~i~~~~~~-~vy~~~~~   64 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELM-------QVVLARKPK----MCS----FLEWRDLK-VVYKRYAS   64 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHH-------HHHHTSCSS----SCS----EEEETTEE-EEEEEETT
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHH-------HHHhccCCC----CCC----eEEECCEE-EEEEEECC
Confidence            8999999999999999998875422  222221122       222211100    112    23455554 56777888


Q ss_pred             eEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhC
Q 032311           79 VKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSN  112 (143)
Q Consensus        79 ~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~N  112 (143)
                      +-|+++++. +.++-.+-.+++.+.++.-+|..|
T Consensus        65 Lyfv~~~~~-~~Nel~~le~L~~~vevl~~yf~~   97 (158)
T 1w63_Q           65 LYFCCAIEG-QDNELITLELIHRYVELLDKYFGS   97 (158)
T ss_dssp             EEEEEEECS-SSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             EEEEEEecC-CCCHHHHHHHHHHHHHHHHHHHcc
Confidence            999999985 234555677778877877777655

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=95.47  E-value=0.48  Score=34.40  Aligned_cols=75  Identities=7%  Similarity=0.115  Sum_probs=55.5

Q ss_pred             eecCCeEEEEEEecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHHhCC
Q 032311           63 YPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGL  139 (143)
Q Consensus        63 ~~~~~~~v~~y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~~  139 (143)
                      ++.++|.+| |....|+-++++++. .+...-.-.||++|.+.|....-+-.-....|..-..|+..++++++.|+.
T Consensus        55 ~~~~~y~fh-y~~~~gl~~l~i~d~-~yp~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~  129 (196)
T 2nut_C           55 LEAGAMTFH-YIIEQGVCYLVLCEA-AFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYID  129 (196)
T ss_dssp             EEETTEEEE-EEEETTEEEEEEEET-TSCHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTGGGHHHHHHHHTTTSC
T ss_pred             EEeCCEEEE-EEeCCCeEEEEEEcC-CcchHHHHHHHHHHHHHHHHhccchhccccCCCchHHHHHHHHHHHHHhcC
Confidence            467889998 888999999999996 344556678899999888775533222223455556899999999999953

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=94.82  E-value=0.66  Score=34.00  Aligned_cols=120  Identities=6%  Similarity=0.143  Sum_probs=72.0

Q ss_pred             EEEEEEEeCCCC-eeEEe-cCCCc-----hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEE
Q 032311            2 IACVAVVGHQNN-PLYIQ-SFTEA-----DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL   74 (143)
Q Consensus         2 i~~l~Ii~~~~~-ply~~-~~~~~-----~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~   74 (143)
                      |+++.|+-+++. |+... .++-.     ...-.-.|+.. +-..+.+++.+.       ..    .-.+.++|.+|+|.
T Consensus         4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f-~~r~il~r~~~~-------~r----~s~~~~~y~fH~y~   71 (199)
T 3kyq_A            4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTF-TSQLIVERSAKG-------SR----ASVKEQEYLCHVYV   71 (199)
T ss_dssp             EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHH-HHHHHHHTSCTT-------EE----EEEECSSEEEEEEE
T ss_pred             EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHH-HHHHHHhcCCCC-------Ce----EEEEeCCEEEEEEE
Confidence            788888876544 44443 22211     22222344555 555666665431       11    23467899999999


Q ss_pred             ecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh-hCCCC-CCCCCCcchhHHHHHHHHHHHhC
Q 032311           75 TNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAV-SNPFH-VPGKKITSRTFAERVSTIVKSFG  138 (143)
Q Consensus        75 T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v-~NPFy-~~~~~I~s~~F~~~v~~~~~~~~  138 (143)
                      ...|+-++++++. .....-.-.+|.+|.+.|.... .+-.- ....|+.   | ..+++++++|+
T Consensus        72 ~~~gl~yl~itd~-~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~---f-~~l~~~m~~Y~  132 (199)
T 3kyq_A           72 RSDSLAGVVIADS-EYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH---Y-TALDGHLSRYQ  132 (199)
T ss_dssp             CTTSEEEEEEEET-TSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCC---C-CTHHHHHHHTT
T ss_pred             ecCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHhccchhhhcccccccc---c-HHHHHHHHHhC
Confidence            9999999999996 3445566788999998877654 22111 1123332   4 45666777774

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=93.61  E-value=1.2  Score=36.15  Aligned_cols=95  Identities=13%  Similarity=0.163  Sum_probs=61.3

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceE
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK   80 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~K   80 (143)
                      ||.++.|+|++|.++..|.|...-.  +      ..++.+...+......  . ..    .+...+++ .+.|....++-
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~--~------~~~~~f~~~v~~~~~~--~-~~----~ii~~~~~-~~vy~~~~~Ly   64 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIG--R------NAVDAFRVNVIHARQQ--V-RS----PVTNIART-SFFHVKRSNIW   64 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCC--H------HHHHHHHHHTTTCSSC--C-CC----SEEEETTE-EEEEEEETTEE
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCC--h------hHHHHHHHHHhccccC--C-CC----CEEEECCE-EEEEEEECCEE
Confidence            8999999999999999998875311  1      1234455555432111  0 11    23345554 46778888899


Q ss_pred             EEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhC
Q 032311           81 FILVTTDLDVRDADVRNFFRRFHAAYIDAVSN  112 (143)
Q Consensus        81 fvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~N  112 (143)
                      |+++++.. .++-.+-++++.+.++.-+|..|
T Consensus        65 fv~~~~~~-~n~l~~le~L~~~v~vl~~yf~~   95 (435)
T 2vgl_M           65 LAAVTKQN-VNAAMVFEFLYKMCDVMAAYFGK   95 (435)
T ss_dssp             EEEEESSC-CCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             EEEEecCC-CCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999852 24555677777777777777654

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=91.73  E-value=2.1  Score=30.46  Aligned_cols=117  Identities=14%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceE
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK   80 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~K   80 (143)
                      |....++|.|.+.+|....-...+  .+  .    -...+-+++.+.   .   ..    .-++.++|.+|.+.. .|+-
T Consensus        44 M~ilYa~VaRG~~VLae~t~~~gn--f~--~----iak~ll~kl~~~---~---~r----~s~~~~~y~fHyl~~-ngl~  104 (169)
T 2vx8_A           44 MAILFAVVARGTTILAKHAWCGGN--FL--E----VTEQILAKIPSE---N---NK----LTYSHGNYLFHYICQ-DRIV  104 (169)
T ss_dssp             SCCCEEEEEETTEEEEEEESSCBS--HH--H----HHHHHHTTSCSS---C---EE----EEEEETTEEEEEEEE-TTEE
T ss_pred             CceEEEEEEcCCEEEEEeccCCCC--HH--H----HHHHHHhhCCCC---C---Cc----eEEEECCEEEEEEEE-CCEE
Confidence            666778889988888776332221  11  1    123334444321   0   11    235678999999885 5999


Q ss_pred             EEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcc-hhHHHHHHHHHHHhC
Q 032311           81 FILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITS-RTFAERVSTIVKSFG  138 (143)
Q Consensus        81 fvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s-~~F~~~v~~~~~~~~  138 (143)
                      |++++|. ...-.-.-.||++|.+.|.+...+-. ....|..- ..|+..+++..+.|+
T Consensus       105 yl~I~D~-~yp~r~AF~fLedI~~eF~~~y~~~~-~~a~pysf~~eF~~~Lk~~~~~~~  161 (169)
T 2vx8_A          105 YLCITDD-DFERSRAFSFLNEVKKRFQTTYGSRA-QTALPYAMNSEFSSVLAAQLKHHS  161 (169)
T ss_dssp             EEEEEET-TSCHHHHHHHHHHHHHHHHHHHTTGG-GTCCTTTTHHHHHHHHSCC-----
T ss_pred             EEEEEcc-ccchHHHHHHHHHHHHHHHHHhhhhh-hccCCcchhHHHHHHHHHHHHHhc
Confidence            9999996 34455678888999887777542211 11123322 367777776666664

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=91.51  E-value=2.9  Score=30.11  Aligned_cols=119  Identities=14%  Similarity=0.272  Sum_probs=71.2

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceE
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK   80 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~K   80 (143)
                      |-...+.|.+.+.+|-......++- ..   +   +-.+++ ++.+   .     +.  +.-+..++|.+| |....|+-
T Consensus         2 M~ilYa~VArg~~iLae~t~~~gnf-~~---i---a~~iL~-kip~---~-----~~--k~s~~~~~y~fH-yl~~~gl~   62 (189)
T 4b93_A            2 MAILFAVVARGTTILAKHAWCGGNF-LE---V---TEQILA-KIPS---E-----NN--KLTYSHGNYLFH-YICQDRIV   62 (189)
T ss_dssp             CSEEEEEEEETTEEEEEEESSEECH-HH---H---HHHHHT-TCCS---S-----SE--EEEEEETTEEEE-EEEETTEE
T ss_pred             CceEEEEEEeCCEEEEeCCCCCCCH-HH---H---HHHHHH-hCCC---C-----CC--eEEEEECCEEEE-EEEeCCeE
Confidence            4455567778777776654333221 11   1   222333 2221   1     11  133578899999 88889999


Q ss_pred             EEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHHhCC
Q 032311           81 FILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGL  139 (143)
Q Consensus        81 fvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~~  139 (143)
                      ++++++. .+.....-.||.+|.+.|....-+.-.....+-....|+..+++.++.|+.
T Consensus        63 yl~i~d~-~yp~r~af~fL~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~d  120 (189)
T 4b93_A           63 YLCITDD-DFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE  120 (189)
T ss_dssp             EEEEEET-TSCHHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEcC-ccCHHHHHHHHHHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhhc
Confidence            9999996 344555678889998777664422111111112335799999999999854

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=90.42  E-value=3.3  Score=28.89  Aligned_cols=90  Identities=4%  Similarity=0.194  Sum_probs=60.2

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCc----hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEec
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEA----DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTN   76 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~----~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~   76 (143)
                      ||.++.|+|++|.++..|-|...    +++.++.--++ .+  +    ..   .    +.    .+...++++ ..|..-
T Consensus        12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~-~~--~----~r---~----~~----~i~~~~~~~-~vy~~~   72 (153)
T 3tjz_C           12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIF-NK--T----HR---T----DS----EIALLEGLT-VVYKSS   72 (153)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHH-HH--H----SS---C----CC----CEEEETTEE-EEEEEC
T ss_pred             HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHH-HH--H----hC---C----CC----CEEEECCEE-EEEEEE
Confidence            89999999999999999988752    22333332333 11  1    11   1    11    122345554 578888


Q ss_pred             CceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh
Q 032311           77 TKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAV  110 (143)
Q Consensus        77 Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v  110 (143)
                      .++-|+++++.. .++-.+-++++.+.++.-+|.
T Consensus        73 ~~Lyfv~~~~~~-eNel~ile~L~~~ve~l~~yf  105 (153)
T 3tjz_C           73 IDLYFYVIGSSY-ENELMLMTVLNCLFDSLSQML  105 (153)
T ss_dssp             SSCEEEEEEETT-SCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEcCC-CChHHHHHHHHHHHHHHHHHh
Confidence            889999999862 355567888899888888887

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=90.04  E-value=0.23  Score=37.17  Aligned_cols=21  Identities=24%  Similarity=0.192  Sum_probs=19.2

Q ss_pred             EEEEEEEeCCCCeeEEecCCC
Q 032311            2 IACVAVVGHQNNPLYIQSFTE   22 (143)
Q Consensus         2 i~~l~Ii~~~~~ply~~~~~~   22 (143)
                      ||+++|+||+|++||.++|..
T Consensus         3 iy~~yi~~~~~~liy~~~~~~   23 (219)
T 2j3t_D            3 IFSVYVVNKAGGLIYQLDSYA   23 (219)
T ss_dssp             EEEEEEECTTSCEEEEEECC-
T ss_pred             EEEEEEEecCCceEEecccCC
Confidence            799999999999999999874

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=86.90  E-value=5.4  Score=32.11  Aligned_cols=93  Identities=8%  Similarity=0.115  Sum_probs=55.2

Q ss_pred             CEEEEEEEeCCCCeeEEecCCCc-hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCce
Q 032311            1 MIACVAVVGHQNNPLYIQSFTEA-DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKV   79 (143)
Q Consensus         1 mi~~l~Ii~~~~~ply~~~~~~~-~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~   79 (143)
                      ||.++.|+|++|.++..|.|... ...+         ++.|...+......+ . ..    .+...+++ .+.|....++
T Consensus         2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~---------~~~f~~~v~~~~~~~-~-~~----~~i~~~~~-~~vy~~~~~L   65 (423)
T 1w63_M            2 SASAVYVLDLKGKVLICRNYRGDVDMSE---------VEHFMPILMEKEEEG-M-LS----PILAHGGV-RFMWIKHNNL   65 (423)
T ss_dssp             CCCEEEEEETTTEECSCBCCSCSCTTTT---------HHHHHHHHHHHHHTS-C-CC----SEEEETTE-EEEEEEETTE
T ss_pred             ceEEEEEECCCCCEEEEEecCCCCChHH---------HHHHHHHHhhccccC-C-CC----CEEEECCE-EEEEEEECCE
Confidence            88999999999999999988743 2111         122222111100000 0 11    12345554 4667778899


Q ss_pred             EEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh
Q 032311           80 KFILVTTDLDVRDADVRNFFRRFHAAYIDAV  110 (143)
Q Consensus        80 Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v  110 (143)
                      -|+++++.. .++-.+-++++.+.++.-+|.
T Consensus        66 yfv~~~~~~-~n~l~~le~L~~~v~~l~~yf   95 (423)
T 1w63_M           66 YLVATSKKN-ACVSLVFSFLYKVVQVFSEYF   95 (423)
T ss_dssp             EEEEEESSC-CCTHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEecCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            999999752 244556667777777766665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	9e-38

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (310), Expect = 9e-38
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 16/146 (10%)

Query: 2   IACVAVVGHQNNPLYIQSFTEA-------DDALKLHHIVHCSLDVVDERVNNPKKSGPTL 54
                +VGH +NP++   F          D       I H +LD+VDE +          
Sbjct: 4   SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENM-------WLS 56

Query: 55  NETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPF 114
           N  +L  +     + V  ++T   ++FI++      ++  ++NFF   +  YI    NPF
Sbjct: 57  NNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVR--QEDGIKNFFTDVYDLYIKFAMNPF 114

Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
           + P   I S  F  +V  + K   LS
Sbjct: 115 YEPNSPIRSSAFDRKVQFLGKKHLLS 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	100.0
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	97.0
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	96.98
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	96.19

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-43  Score=251.03  Aligned_cols=128  Identities=27%  Similarity=0.447  Sum_probs=117.4

Q ss_pred             EEEEEEEeCCCCeeEEecCCCc-------hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEE
Q 032311            2 IACVAVVGHQNNPLYIQSFTEA-------DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL   74 (143)
Q Consensus         2 i~~l~Ii~~~~~ply~~~~~~~-------~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~   74 (143)
                      .++++||||+|+|||+++|+..       +..+..++++|+|||+++++.|..       +++|||+++++++|+||||+
T Consensus         4 ~y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~-------~~~~l~~l~~~~~~~v~~y~   76 (140)
T d2j3wa1           4 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLS-------NNMYLKTVDKFNEWFVSAFV   76 (140)
T ss_dssp             CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGC-------SCSEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccC-------CCccceeEEecCCEEEEEEE
Confidence            3789999999999999999754       345667899999999999998842       47999999999999999999


Q ss_pred             ecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 032311           75 TNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFG  138 (143)
Q Consensus        75 T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~  138 (143)
                      |+||+||||+++++  .++.++.+|+++|++|+++|+||||++++||+|+.||++|++++++|-
T Consensus        77 T~tg~Kfvl~td~~--~~~~i~~~~~~v~~lYv~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~l  138 (140)
T d2j3wa1          77 TAGHMRFIMLHDVR--QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHL  138 (140)
T ss_dssp             CTTCCEEEEEESSC--CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             cCCCcEEEEEeCCC--cchHHHHHHHHHHHHHHHHhhCccCCCCCcccCHHHHHHHHHHHHHHc
Confidence            99999999999986  678899999999999999999999999999999999999999999984

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.013  Score=39.18  Aligned_cols=122  Identities=11%  Similarity=0.127  Sum_probs=71.2

Q ss_pred             EEEEEEEeCC-CCeeEEec-CCCc-----hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEE
Q 032311            2 IACVAVVGHQ-NNPLYIQS-FTEA-----DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL   74 (143)
Q Consensus         2 i~~l~Ii~~~-~~ply~~~-~~~~-----~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~   74 (143)
                      ++++.|+-++ ..|+.+.. ++-.     ...---.++.+ .-..+.++..+..      .     +-.+.++|.+|+|+
T Consensus         3 l~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f-~sr~i~~Rt~~g~------r-----~sv~~~~y~~h~yv   70 (140)
T d1ioua_           3 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTF-FAETVASRTGAGE------R-----QSIEEGNYIGHVYA   70 (140)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHH-HHHHHHHHCCSSS------E-----EEEEETTEEEEEEC
T ss_pred             EEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHH-HHHHHhhcCCCCc------e-----EEEEcCCeEEEEEE
Confidence            5677888653 45776642 2211     11111123333 5667777765421      1     22467899999999


Q ss_pred             ecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCC----CCCCCCCCcchhHHHHHHHHHHHh-CCC
Q 032311           75 TNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNP----FHVPGKKITSRTFAERVSTIVKSF-GLS  140 (143)
Q Consensus        75 T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NP----Fy~~~~~I~s~~F~~~v~~~~~~~-~~~  140 (143)
                      ...|+-+|+++|. .....-.=.+|++|.+.|....-+.    --..+.++..    ..+++++++| +|.
T Consensus        71 ~~~gl~~l~i~d~-~Yp~r~AF~~L~~i~~eF~~~~~~~~~~~i~~~~~~~~~----~~l~~~l~kYQdP~  136 (140)
T d1ioua_          71 RSEGICGVLITDK-QYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKM----KQLDTYISKYQDPS  136 (140)
T ss_dssp             CSSSCEEEEEBCT-TSCHHHHHHHHHHHHHHHHHSSCHHHHTTCSCCCTTTSC----HHHHHHHHHTTSSC
T ss_pred             eeCCEEEEEEECC-CcchHHHHHHHHHHHHHHHHHcChHhhhhhhccccccch----HHHHHHHHHhCchh
Confidence            9999999999996 3445555677888887776543111    1111223333    4566677777 554