Citrus Sinensis ID: 032322

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEVT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHccEEccccEEccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcEcc
Coil and Loop (DISEMBL)
MAEEQVKKVeaetpaapapapalapapapavpnndvaEEKAVTQlhdqekpvddskalavvdqtpdsakkkisgekkisgshdRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEVT
Flexible Loop (DISEMBL)
MAEEQVKKVeaetpaapapapALAPAPAPAVPNNDVAEEKAVTQlhdqekpvddskalavvdqtpdsakkkisgekkisgshdrdvALAEVEKEKRESFIKAWeesektkaenkAQKKLSavaawenskkasleaklkkievt
Low Complexity Region (SEG)
MAEEQVKKVEAETpaapapapalapapapavpNNDVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDsakkkisgekkisgsHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENskkasleaklkkieVT
Disordered region (IsUnstruct)
***********************************************************************************************************************************************
Disordered Region (DISOPRED)
*****************************************************************************************EVEK*K***************A*NKAQKKLSAVAAWENSKKASLEAKLKKI***
Disordered Region (DISEMBL)
***************************APAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDQ**********************VALAEVEKEKRESFIKAWEE***************************LEAKLKKIEVT
Disordered Region (DISPRO)
**************************************************************QT*****************HDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIE*T
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEVT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.888	0.641	0.547	1e-25
O80837	190	Remorin OS=Arabidopsis th	yes	no	0.853	0.642	0.546	1e-23
Q9M2D8	212	Uncharacterized protein A	no	no	0.706	0.476	0.579	8e-20

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 97/148 (65%), Gaps = 21/148 (14%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQ------LHDQEKPVDD 54
           MAE + KKVE   PA PAP P  AP          VA+EKA+          ++EKP DD
Sbjct: 1   MAELEAKKVEIVDPAPPAPGPVEAP-------KEVVADEKAIVAPALPPPAEEKEKP-DD 52

Query: 55  SKALAVVD-QTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAEN 113
           SKAL VV+ + P+ A      ++K  GS DRD  LA V  EKR S IKAWEESEK+KAEN
Sbjct: 53  SKALVVVETKAPEPA------DEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAEN 106

Query: 114 KAQKKLSAVAAWENSKKASLEAKLKKIE 141
           KAQKK+SA+ AWENSKKA+LEA+LKK+E
Sbjct: 107 KAQKKVSAIGAWENSKKANLEAELKKME 134

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.
Solanum tuberosum (taxid: 4113)

>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/139 (54%), Positives = 96/139 (69%), Gaps = 17/139 (12%)

Query: 1   MAEEQ-VKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALA 59
           MAEEQ   KV+ E+PA  APA    PAP       +VA+EK    +H+   P  +SKALA
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPAPV------EVADEK----IHNP--PPVESKALA 48

Query: 60  VVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKL 119
           VV++  +    K    K  SGS DRDV LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+
Sbjct: 49  VVEKPIEEHTPK----KASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKI 104

Query: 120 SAVAAWENSKKASLEAKLK 138
           S V AWENSKKA++EA+L+
Sbjct: 105 SDVHAWENSKKAAVEAQLR 123

Exhibits a non sequence-specific DNA-binding activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 78/107 (72%), Gaps = 6/107 (5%)

Query: 35  DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKE 94
           DVAEEK   Q    E+  DDSKAL VV++  +      +  K  S S DRDV LA++ KE
Sbjct: 48  DVAEEK--IQNPPPEQIFDDSKALTVVEKPVEEP----APAKPASASLDRDVKLADLSKE 101

Query: 95  KRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIE 141
           KR SF++AWEESEK+KAENKA+KK++ V AWENSKKA++EA+LKKIE
Sbjct: 102 KRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIE 148

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
255541538	188	Remorin, putative [Ricinus communis] gi|	0.867	0.659	0.652	4e-34
224130228	193	predicted protein [Populus trichocarpa]	0.874	0.647	0.593	1e-30
224067874	196	predicted protein [Populus trichocarpa]	0.874	0.637	0.587	6e-28
225454144	196	PREDICTED: uncharacterized protein At3g6	0.867	0.632	0.587	3e-26
147785185	196	hypothetical protein VITISV_000833 [Viti	0.853	0.622	0.589	8e-26
341833968	198	remorin [Pyrus x bretschneideri]	0.853	0.616	0.541	3e-25
351724129	194	uncharacterized protein LOC100305501 [Gl	0.888	0.654	0.541	1e-24
34925093	198	RecName: Full=Remorin; AltName: Full=pp3	0.888	0.641	0.547	7e-24
242076586	212	hypothetical protein SORBIDRAFT_06g02363	0.979	0.660	0.571	8e-24
326492750	211	predicted protein [Hordeum vulgare subsp	0.748	0.507	0.614	9e-24

>gi|255541538|ref|XP_002511833.1| Remorin, putative [Ricinus communis] gi|223549013|gb|EEF50502.1| Remorin, putative [Ricinus communis]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/141 (65%), Positives = 108/141 (76%), Gaps = 17/141 (12%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAV 60
           MAE++ KK+EAE+P APAPA A           +DVA +KA T    +EKP DDSKALAV
Sbjct: 1   MAEQEAKKLEAESPVAPAPAEA----------KSDVAHDKA-TVPTPEEKP-DDSKALAV 48

Query: 61  VDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLS 120
           V++ P+S  KK SG     GS DRD+ALAEVEKEKR SFIKAWE+SEK+KAENKAQKKLS
Sbjct: 49  VEKVPESGPKKTSG-----GSLDRDIALAEVEKEKRNSFIKAWEDSEKSKAENKAQKKLS 103

Query: 121 AVAAWENSKKASLEAKLKKIE 141
           +V AWENSKKA+LEAKL+KIE
Sbjct: 104 SVTAWENSKKAALEAKLRKIE 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130228|ref|XP_002320784.1| predicted protein [Populus trichocarpa] gi|222861557|gb|EEE99099.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/145 (59%), Positives = 105/145 (72%), Gaps = 20/145 (13%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVT----QLHDQEKPVDDSK 56
           MAE++VKKVE ETP  PAP              +DVA+EKA+        ++EK  D+ K
Sbjct: 1   MAEQEVKKVETETPVTPAPVET----------KSDVADEKAIVPPPPAAEEKEKVADELK 50

Query: 57  ALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQ 116
           ALAVV++T + A KKISG     GS DRD+ALA++EKEKR SFIKAWE+SEKTKAENK+Q
Sbjct: 51  ALAVVEKT-EPAPKKISG-----GSIDRDIALADLEKEKRLSFIKAWEDSEKTKAENKSQ 104

Query: 117 KKLSAVAAWENSKKASLEAKLKKIE 141
           KKLSAV AWENSKKA+LEA L+K+E
Sbjct: 105 KKLSAVVAWENSKKAALEATLRKME 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067874|ref|XP_002302576.1| predicted protein [Populus trichocarpa] gi|118481279|gb|ABK92585.1| unknown [Populus trichocarpa] gi|222844302|gb|EEE81849.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 104/148 (70%), Gaps = 23/148 (15%)

Query: 1   MAEEQVKKVEAETPAAPAP-------APALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVD 53
           MAE++VKKVEA TP APAP       A     AP P V      ++KA T         +
Sbjct: 1   MAEQEVKKVEAVTPVAPAPVETKSDVADGKVTAPPPPVAAE---KQKAAT-------AAE 50

Query: 54  DSKALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAEN 113
           +SKALAVV++T + A KK+SG     GS DRDVALA++EKEKR SFIKAWE+SEKTKAEN
Sbjct: 51  ESKALAVVEKT-EPAPKKVSG-----GSIDRDVALADLEKEKRLSFIKAWEDSEKTKAEN 104

Query: 114 KAQKKLSAVAAWENSKKASLEAKLKKIE 141
           K+QK  SAVAAWENSKKA+LEAKL+K+E
Sbjct: 105 KSQKNFSAVAAWENSKKAALEAKLRKME 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454144|ref|XP_002270914.1| PREDICTED: uncharacterized protein At3g61260 isoform 1 [Vitis vinifera] gi|225454146|ref|XP_002270957.1| PREDICTED: uncharacterized protein At3g61260 isoform 2 [Vitis vinifera] gi|297745246|emb|CBI40326.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 92/131 (70%), Gaps = 7/131 (5%)

Query: 7   KKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDQTPD 66
           K VE++     A  P   PA  PA   NDVA EK+V  +   E   D+SKALAVV++TPD
Sbjct: 3   KNVESDPNPPLASGPEFPPATTPADVKNDVALEKSV--VPPPEVKADESKALAVVEKTPD 60

Query: 67  SAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWE 126
           SA KK SG     GS +RDVALA +EKEK+ SFI+AWEESEK+K +NKAQKKLS V AWE
Sbjct: 61  SAAKKTSG-----GSFERDVALANLEKEKQLSFIRAWEESEKSKVDNKAQKKLSDVCAWE 115

Query: 127 NSKKASLEAKL 137
           NSKKA++EA L
Sbjct: 116 NSKKAAVEANL 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785185|emb|CAN75437.1| hypothetical protein VITISV_000833 [Vitis vinifera]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 91/129 (70%), Gaps = 7/129 (5%)

Query: 7   KKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDQTPD 66
           K VE++     A  P   PA  PA   NDVA EK+V  +   E   D+SKALAVV++TPD
Sbjct: 3   KNVESDPNPPLASGPEFXPATTPADVKNDVALEKSV--VPPPEVKADESKALAVVEKTPD 60

Query: 67  SAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWE 126
           SA KK SG     GS +RDVALA +EKEK+ SFI+AWEESEK+K +NKAQKKLS V AWE
Sbjct: 61  SAAKKTSG-----GSFERDVALANLEKEKQLSFIRAWEESEKSKVDNKAQKKLSDVCAWE 115

Query: 127 NSKKASLEA 135
           NSKKA++EA
Sbjct: 116 NSKKAAVEA 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341833968|gb|AEK94319.1| remorin [Pyrus x bretschneideri]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 97/146 (66%), Gaps = 24/146 (16%)

Query: 3   EEQVKKVEAETPAAPA-PAPALAPA------PAPAVPNNDVAEEKAVTQLHDQEKPVDDS 55
           EEQ+KK EAE P+ P  P PA AP        A  VP +DV             K  DD+
Sbjct: 6   EEQLKKAEAE-PSLPVEPPPASAPVDVAVEKKADVVPPSDV-----------DVKGGDDT 53

Query: 56  KALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKA 115
           KAL VVD+ P++ +KK SG     GS DRD+ALA++EKEK  SF++AWEESEK KAENKA
Sbjct: 54  KALTVVDKVPETVEKKASG-----GSIDRDIALAQLEKEKSMSFVRAWEESEKAKAENKA 108

Query: 116 QKKLSAVAAWENSKKASLEAKLKKIE 141
           QKKLS V AWE+S+KA++EAKL+ IE
Sbjct: 109 QKKLSDVTAWESSRKAAVEAKLRSIE 134

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724129|ref|NP_001236279.1| uncharacterized protein LOC100305501 [Glycine max] gi|255625713|gb|ACU13201.1| unknown [Glycine max]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 97/144 (67%), Gaps = 17/144 (11%)

Query: 1   MAEEQVKKVEAET---PAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKA 57
           M EEQ KKV AET   P+ PAP P +       VP  DVAEEK+V        P D+SKA
Sbjct: 1   MTEEQSKKV-AETESFPSNPAPEPVV-------VPKEDVAEEKSVIP-QPSPSPADESKA 51

Query: 58  LAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQK 117
           L +V++T +     ++ EK I GS +RD  LA V  EKR S IKAWEESEK+KA+NK+ K
Sbjct: 52  LVIVEKTSE-----VAEEKPIEGSVNRDAVLARVATEKRLSLIKAWEESEKSKADNKSHK 106

Query: 118 KLSAVAAWENSKKASLEAKLKKIE 141
           KLSA++AWENSKKA+ EA+L+KIE
Sbjct: 107 KLSAISAWENSKKAAAEAELRKIE 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34925093|sp|P93788.1|REMO_SOLTU RecName: Full=Remorin; AltName: Full=pp34 gi|1881585|gb|AAB49425.1| remorin [Solanum tuberosum]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 97/148 (65%), Gaps = 21/148 (14%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQ------LHDQEKPVDD 54
           MAE + KKVE   PA PAP P  AP          VA+EKA+          ++EKP DD
Sbjct: 1   MAELEAKKVEIVDPAPPAPGPVEAP-------KEVVADEKAIVAPALPPPAEEKEKP-DD 52

Query: 55  SKALAVVD-QTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAEN 113
           SKAL VV+ + P+ A      ++K  GS DRD  LA V  EKR S IKAWEESEK+KAEN
Sbjct: 53  SKALVVVETKAPEPA------DEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAEN 106

Query: 114 KAQKKLSAVAAWENSKKASLEAKLKKIE 141
           KAQKK+SA+ AWENSKKA+LEA+LKK+E
Sbjct: 107 KAQKKVSAIGAWENSKKANLEAELKKME 134

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242076586|ref|XP_002448229.1| hypothetical protein SORBIDRAFT_06g023630 [Sorghum bicolor] gi|241939412|gb|EES12557.1| hypothetical protein SORBIDRAFT_06g023630 [Sorghum bicolor]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 102/147 (69%), Gaps = 7/147 (4%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHD----QEKP-VDDS 55
           MAEE  KKVE E      P  A A A   A    DVAEEKAV    +    +EKP  DDS
Sbjct: 1   MAEEAAKKVEVEVTKDKEPEAAPAEAVPEAAAKEDVAEEKAVIPATEPPAAEEKPPADDS 60

Query: 56  KALAVVDQTPDS-AKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENK 114
           KALA+V++  D  A +K + EK+  GS+DRD+ALA VE EKR S IKAWEE+EKTKAENK
Sbjct: 61  KALAIVEKVADEPAPEKPAAEKQ-GGSNDRDLALARVETEKRNSLIKAWEENEKTKAENK 119

Query: 115 AQKKLSAVAAWENSKKASLEAKLKKIE 141
           A KK+SA+ +WEN+KKA++EA+LKKIE
Sbjct: 120 AAKKVSAILSWENTKKANIEAQLKKIE 146

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326492750|dbj|BAJ90231.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326526095|dbj|BAJ93224.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 86/114 (75%), Gaps = 7/114 (6%)

Query: 35  DVAEEKAVTQLH----DQEKP-VDDSKALAVVDQTPDS-AKKKISGEKKI-SGSHDRDVA 87
           DV EEKAV        D+EKP VDDSKAL VV++  D    +K++ EK    GS+DRD+A
Sbjct: 32  DVTEEKAVIPAPAPAADEEKPPVDDSKALVVVEKVADEPVAEKLTDEKAAHGGSNDRDLA 91

Query: 88  LAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIE 141
           LA VE EKR S IKAWEE+EKTKAENKA KK+SA+ +WEN+KKA++EA+LKKIE
Sbjct: 92  LARVESEKRNSLIKAWEENEKTKAENKATKKVSAILSWENTKKANIEAQLKKIE 145

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.594	0.429	0.515	2.1e-18
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.608	0.410	0.516	1.4e-16
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.580	0.436	0.526	2.3e-16
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.517	0.422	0.462	3.1e-12
TAIR|locus:2172793	202	AT5G23750 "AT5G23750" [Arabido	0.314	0.222	0.666	6.4e-12
TAIR|locus:2127058	123	AT4G00670 "AT4G00670" [Arabido	0.230	0.268	0.454	0.00073

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 204 (76.9 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 51/99 (51%), Positives = 61/99 (61%)

Query:    36 VAEEKAVTQ------LHDQEKPVDDSKALAVVD-QTPDXXXXXXXXXXXXXXXHDRDVAL 88
             VA+EKA+          ++EKP DDSKAL VV+ + P+                DRD  L
Sbjct:    29 VADEKAIVAPALPPPAEEKEKP-DDSKALVVVETKAPEPADEKKEGSI------DRDAVL 81

Query:    89 AEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWEN 127
             A V  EKR S IKAWEESEK+KAENKAQKK+SA+ AWEN
Sbjct:    82 ARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWEN 120

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 48/93 (51%), Positives = 60/93 (64%)

Query:    35 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKE 94
             DVAEEK   Q    E+  DDSKAL VV++  +                DRDV LA++ KE
Sbjct:    48 DVAEEKI--QNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASL----DRDVKLADLSKE 101

Query:    95 KRESFIKAWEESEKTKAENKAQKKLSAVAAWEN 127
             KR SF++AWEESEK+KAENKA+KK++ V AWEN
Sbjct:   102 KRLSFVRAWEESEKSKAENKAEKKIADVHAWEN 134

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 49/93 (52%), Positives = 63/93 (67%)

Query:    35 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKE 94
             +VA+EK    +H+   PV+ SKALAVV++  +                DRDV LA++EKE
Sbjct:    30 EVADEK----IHNPP-PVE-SKALAVVEKPIEEHTPKKASSGSA----DRDVILADLEKE 79

Query:    95 KRESFIKAWEESEKTKAENKAQKKLSAVAAWEN 127
             K+ SFIKAWEESEK+KAEN+AQKK+S V AWEN
Sbjct:    80 KKTSFIKAWEESEKSKAENRAQKKISDVHAWEN 112

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 37/80 (46%), Positives = 49/80 (61%)

Query:    48 QEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESE 107
             +E+  DDSKA+ +V    +               H RD  L  +E++KR S IKAWEE+E
Sbjct:    24 KEEKSDDSKAIVLVVAAKEPTEDKKVGSV-----H-RDAVLVRLEQDKRISLIKAWEEAE 77

Query:   108 KTKAENKAQKKLSAVAAWEN 127
             K+K ENKAQKK+S+V AWEN
Sbjct:    78 KSKVENKAQKKISSVGAWEN 97

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2172793 AT5G23750 "AT5G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query:    83 DRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWEN 127
             +RD  LA VE EKR S IKAWEE+EK K ENKA+KKLS++ +WEN
Sbjct:    80 NRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWEN 124

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2127058 AT4G00670 "AT4G00670" [Arabidopsis thaliana (taxid:3702)]

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query:    94 EKRESFIKAWEESEKTKAENKAQKKLSAVAAWE 126
             +++   IKAW+E + TK  NK QKKL  ++ WE
Sbjct:    11 DEQSKVIKAWKELKITKVNNKTQKKLLDISGWE 43


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.300   0.116   0.301    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      143        95   0.00091  102 3  10 24  0.37    31
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  143 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.10u 0.16s 15.26t   Elapsed:  00:00:01
  Total cpu time:  15.10u 0.16s 15.26t   Elapsed:  00:00:01
  Start:  Sat May 11 01:28:13 2013   End:  Sat May 11 01:28:14 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80837	REMO_ARATH	No assigned EC number	0.5467	0.8531	0.6421	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XIV0110 SubName- Full=Putative uncharacterized protein; (193 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	3e-08

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 27/52 (51%), Positives = 35/52 (67%)

Query: 91  VEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEV 142
            +K + ES   AWEE+EK K  NK Q++ + + AWEN KKA  EA+LKKIE 
Sbjct: 1   SKKSEAESRADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIER 52

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF03766	57	Remorin_N: Remorin, N-terminal region ; InterPro:	99.59
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	99.51
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	81.71

>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides

Probab=99.59  E-value=5.1e-16  Score=106.08  Aligned_cols=53  Identities=55%  Similarity=0.683  Sum_probs=46.5

Q ss_pred             CCChhhhhcccCCCCCCCCCCCCcceeeeccC-CCchhhhcccccCCCCchhHHHHHHHH
Q 032322           33 NNDVAEEKAVTQLHDQEKPVDDSKALAVVDQT-PDSAKKKISGEKKISGSHDRDVALAEV   91 (143)
Q Consensus        33 ~kdvaeEkav~P~p~~~~~~ddsKAl~vvek~-~~~~~~~~~~~k~~~gs~drD~~Larv   91 (143)
                      ++|++++++++|||. +.+.||||||++|++. ++++.     +|+++||+|||++|+||
T Consensus         4 ~~dva~ek~~~PpP~-~~k~ddSKAl~vVek~~~epa~-----eK~s~GS~dRDa~LA~v   57 (57)
T PF03766_consen    4 AKDVAEEKSVIPPPA-EEKPDDSKALVVVEKKVPEPAE-----EKPSEGSIDRDAALARV   57 (57)
T ss_pred             chhhccccCCCCCCC-CCCCCccceEEEeeccCCCccc-----cccCCCcchhhhhhhcC
Confidence            489999999998886 6778999999999986 56776     78899999999999985

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=99.51  E-value=1.6e-14  Score=107.66  Aligned_cols=50  Identities=42%  Similarity=0.666  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhhHhHHHhhhhhhhhHHHHhhhhhcC
Q 032322           94 EKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEVT  143 (143)
Q Consensus        94 EKR~s~IkAWEE~EKaK~~nra~k~~s~I~aWEn~kKAk~EAelkKiEek  143 (143)
                      +.+.++|.+||++|++|+.|||++++++|++|||+||+++|++|+++|.+
T Consensus         3 ~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~k   52 (111)
T PF03763_consen    3 EEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEK   52 (111)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999963

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=81.71  E-value=2.8  Score=31.46  Aligned_cols=32  Identities=34%  Similarity=0.493  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhhHhHH
Q 032322           92 EKEKRESFIKAWEESEKTKAENKAQKKLSAVA  123 (143)
Q Consensus        92 e~EKR~s~IkAWEE~EKaK~~nra~k~~s~I~  123 (143)
                      -+++..+-|.+||...|+|++....+.+.++.
T Consensus        23 r~~ree~~I~aWEn~qkaKaea~m~k~E~klE   54 (111)
T PF03763_consen   23 RYEREEAKIQAWENLQKAKAEAEMRKIEEKLE   54 (111)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999998888877653

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 3  EEQ-VKKVEAE-TPAAPAPAPALA 24
          E+Q +KK++A     A   APALA
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00