Citrus Sinensis ID: 032324

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGADIWAPIKTTSPKFEKAITQFH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
mmenkrspcavdqgslptltskrhkadlSISAKERKEKLGERIIALQQLvspygktdtASVLWEAMEYIQFLHEQVKVLsapylqsmpaaKVQELEQYSLRnrglclvpisctagvarsngadiwapikttspkFEKAITQFH
Flexible Loop (DISEMBL)
mmenkrspcavdqgslptltskrhkadlsisAKERKEKLGERIIalqqlvspygKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGvarsngadiwapikttspkfekAITQFH
Low Complexity Region (SEG)
MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGADIWAPIKTTSPKFEKAITQFH
Disordered region (IsUnstruct)
****************************************ERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGADIWAPIKT*************
Disordered Region (DISOPRED)
******************************************IIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKV****************************LVPISCTAGVARSNGADIWAPIKT*************
Disordered Region (DISEMBL)
***********DQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGADIWAPIKTTSPKFEKAITQFH
Disordered Region (DISPRO)
*******************************AKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYL*****************NRGLCLVPISCTAGVARSNGADIWAPIKTTSPKFEKA***FH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGADIWAPIKTTSPKFEKAITQFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q9LT67	270	Transcription factor bHLH	no	no	0.895	0.474	0.510	2e-29
Q94JL3	393	Transcription factor bHLH	no	no	0.664	0.241	0.537	2e-24
Q8GXT3	454	Transcription factor bHLH	no	no	0.776	0.244	0.483	3e-23
Q7XHI5	362	Transcription factor bHLH	no	no	0.699	0.276	0.429	3e-22
Q8S3D1	407	Transcription factor bHLH	no	no	0.664	0.233	0.423	3e-21
Q9SFZ3	453	Transcription factor bHLH	no	no	0.559	0.176	0.565	9e-21
Q8VZ22	301	Transcription factor bHLH	no	no	0.580	0.275	0.515	4e-19
Q9FYJ6	319	Transcription factor bHLH	no	no	0.643	0.288	0.480	4e-18
Q9M0X8	298	Transcription factor bHLH	no	no	0.559	0.268	0.52	8e-18
Q8S3D5	310	Transcription factor bHLH	no	no	0.573	0.264	0.341	3e-08

>sp|Q9LT67|BH113_ARATH Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 87/139 (62%), Gaps = 11/139 (7%)

Query: 12  DQGSLPTLTSKRHKADLSIS-AKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQ 70
           DQ   P    KR++   S+  AK RKE+LGERI ALQQLVSPYGKTD ASVL EAM YI+
Sbjct: 132 DQNRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIK 191

Query: 71  FLHEQVKVLSAPYL--QSMPAAKVQ-----ELEQYSLRNRGLCLVPISCTAGVARSNGAD 123
           FL +Q++VL +PYL   S+    V       ++   LR+RGLCLVP+S T  V  SNGAD
Sbjct: 192 FLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGAD 251

Query: 124 IWAPI---KTTSPKFEKAI 139
            W+P     TTSP   +  
Sbjct: 252 FWSPATMGHTTSPSLPQGF 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JL3|BH112_ARATH Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 68/106 (64%), Gaps = 11/106 (10%)

Query: 33  KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQ------- 85
           K RKE L ++I +LQQLVSP+GKTDTASVL EA+EYI+FLH+QV VLS PY++       
Sbjct: 280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQ 339

Query: 86  ----SMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGADIWAP 127
               S  +    E E + LR  GLCLVPIS T  VA    AD W P
Sbjct: 340 QQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 385

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXT3|BH123_ARATH Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/120 (48%), Positives = 75/120 (62%), Gaps = 9/120 (7%)

Query: 17  PTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQV 76
           P     + +A     A +RKEK+G+RI ALQQLVSP+GKTD ASVL EA+EYI+FLH+QV
Sbjct: 328 PAAKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQV 387

Query: 77  KVLSAPYLQSMPAAKVQE---------LEQYSLRNRGLCLVPISCTAGVARSNGADIWAP 127
             LS PY++S  + + Q+          E+  LR+RGLCLVP+S T  V      D W P
Sbjct: 388 SALSNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XHI5|BH133_ARATH Transcription factor bHLH133 OS=Arabidopsis thaliana GN=BHLH133 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 72/142 (50%), Gaps = 42/142 (29%)

Query: 33  KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQS------ 86
           K RKEKLG RI +L QLVSP+GKTDTASVL EA+ YI+FLH Q++ LS PY  +      
Sbjct: 219 KVRKEKLGGRIASLHQLVSPFGKTDTASVLSEAIGYIRFLHSQIEALSLPYFGTPSRNNM 278

Query: 87  ------------MPAAKVQELEQY------------------------SLRNRGLCLVPI 110
                        P    Q + +Y                         LR+RGLCLVPI
Sbjct: 279 MHQHAQRNMNGIFPEDPGQLVNEYCMKRGVSLSSTDNQKSNPNEEPMKDLRSRGLCLVPI 338

Query: 111 SCTAGVARSNGADIWAPIKTTS 132
           SCT  V   NGAD WAP   T+
Sbjct: 339 SCTLQVGSDNGADYWAPAFGTT 360

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 69/137 (50%), Gaps = 42/137 (30%)

Query: 33  KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKV 92
           K RKEKLG RI AL QLVSP+GKTDTASVL EA+ YI+FL  Q++ LS PY  +  +  +
Sbjct: 263 KVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGNM 322

Query: 93  Q------------------------------------------ELEQYSLRNRGLCLVPI 110
           +                                          E  +  LR+RGLCLVPI
Sbjct: 323 RHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPI 382

Query: 111 SCTAGVARSNGADIWAP 127
           SCT  V   NGAD WAP
Sbjct: 383 SCTLQVGSDNGADYWAP 399

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 63/92 (68%), Gaps = 12/92 (13%)

Query: 33  KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYL---QSMPA 89
           K RKEKLG+RI ALQQLVSP+GKTDTASVL EA+ YI+FL  Q++ LS PY+   ++ P 
Sbjct: 332 KVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIETLSVPYMRASRNRPG 391

Query: 90  AKVQ---------ELEQYSLRNRGLCLVPISC 112
              Q         E E   LR+RGLCLVP+SC
Sbjct: 392 KASQLVSQSQEGDEEETRDLRSRGLCLVPLSC 423

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ22|BH103_ARATH Transcription factor bHLH103 OS=Arabidopsis thaliana GN=BHLH103 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 16/99 (16%)

Query: 31  SAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQV--KVLSAPYLQSMP 88
           S K RKEKLG+RI ALQQLVSP+GKTDTASVL +A++YI+FL EQ+  KV ++P+L S+ 
Sbjct: 188 SFKVRKEKLGDRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITEKVSTSPHLNSIG 247

Query: 89  AAKVQELEQYS--------------LRNRGLCLVPISCT 113
           + + ++    S              LR+RGLCL+PIS T
Sbjct: 248 SGEQKQWSDKSSNNTHNQNCSPRQDLRSRGLCLMPISST 286

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYJ6|BH111_ARATH Transcription factor bHLH111 OS=Arabidopsis thaliana GN=BHLH111 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 62/104 (59%), Gaps = 12/104 (11%)

Query: 36  KEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQS--------- 86
           K KL ++I  LQQ+VSP+GKTDTASVL EA+ YI F  EQVK+LS PY+++         
Sbjct: 208 KAKLRDKITTLQQIVSPFGKTDTASVLQEAITYINFYQEQVKLLSTPYMKNSSMKDPWGG 267

Query: 87  --MPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGA-DIWAP 127
                   +  +   LR+RGLCLVPIS T    R N A D W P
Sbjct: 268 WDREDHNKRGPKHLDLRSRGLCLVPISYTPIAYRDNSATDYWNP 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0X8|BH114_ARATH Transcription factor bHLH114 OS=Arabidopsis thaliana GN=BHLH114 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 64/100 (64%), Gaps = 20/100 (20%)

Query: 31  SAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAA 90
           S K RKEKLG+RI ALQQLVSP+GKTDTASVL EA+EYI+FL EQV VLS P   ++ + 
Sbjct: 171 SFKVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQEQVTVLSNPEQNTIGSV 230

Query: 91  KVQ------------ELEQ--------YSLRNRGLCLVPI 110
           + Q            E+E+          L +RGLCL+PI
Sbjct: 231 QQQQCSNKKSINTQGEVEEDECSPRRYVDLSSRGLCLMPI 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 35/117 (29%)

Query: 29  SISAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMP 88
           SI+ + R+E++ ER+ +LQ+LV    KTD AS+L E ++Y++FL  QVKVLS   L    
Sbjct: 142 SIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAA 201

Query: 89  AAKVQELE----------------------------------QYSLRNRGLCLVPIS 111
           +A  Q  E                                  QY L+ +GLCL+PIS
Sbjct: 202 SASSQISEDAGGSHENTSSSGEAKMTEHQVAKLMEEDMGSAMQY-LQGKGLCLMPIS 257

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
224121988	142	predicted protein [Populus trichocarpa]	0.993	1.0	0.788	6e-62
449468842	167	PREDICTED: transcription factor bHLH113-	1.0	0.856	0.772	2e-59
224145311	142	predicted protein [Populus trichocarpa]	0.993	1.0	0.767	4e-59
351726618	167	uncharacterized protein LOC100527660 [Gl	1.0	0.856	0.763	7e-58
356521467	167	PREDICTED: transcription factor bHLH113-	1.0	0.856	0.756	1e-57
255588215	119	transcription factor, putative [Ricinus	0.832	1.0	0.873	2e-55
388503964	167	unknown [Lotus japonicus]	1.0	0.856	0.722	3e-54
225434106	136	PREDICTED: transcription factor bHLH113	0.944	0.992	0.786	3e-54
357475557	165	Transcription factor bHLH [Medicago trun	0.993	0.860	0.690	3e-53
357475561	142	Transcription factor bHLH [Medicago trun	0.993	1.0	0.690	4e-53

>gi|224121988|ref|XP_002330703.1| predicted protein [Populus trichocarpa] gi|222872307|gb|EEF09438.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (616), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 125/142 (88%)

Query: 2   MENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTASV 61
           MENKRSPC+VD  SL +L +KRHKAD SIS KERKEKLGERI+ALQQLVSPYGKTDTASV
Sbjct: 1   MENKRSPCSVDHASLTSLATKRHKADFSISTKERKEKLGERIVALQQLVSPYGKTDTASV 60

Query: 62  LWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNG 121
           L EAMEYI+FLHEQV+VLSAPYLQ    A++QEL QYSLRN+GLCLVP SCTAG+ARSNG
Sbjct: 61  LMEAMEYIRFLHEQVQVLSAPYLQGTSTAQMQELGQYSLRNKGLCLVPTSCTAGIARSNG 120

Query: 122 ADIWAPIKTTSPKFEKAITQFH 143
           ADIWAPIK+ SPKF K ++ FH
Sbjct: 121 ADIWAPIKSPSPKFNKDVSPFH 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468842|ref|XP_004152130.1| PREDICTED: transcription factor bHLH113-like [Cucumis sativus] gi|449484720|ref|XP_004156961.1| PREDICTED: transcription factor bHLH113-like [Cucumis sativus]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/145 (77%), Positives = 127/145 (87%), Gaps = 2/145 (1%)

Query: 1   MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTAS 60
           MME KR+ C+VD+ +L +LT KRHK D SIS+KERK+KLGERI+ALQQLVSPYGKTDTAS
Sbjct: 23  MMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTAS 82

Query: 61  VLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELE--QYSLRNRGLCLVPISCTAGVAR 118
           VL EAMEYIQFLHEQVKVLSAPYLQS P   +QE+E   +SLR+RGLCLVPISCTAGVAR
Sbjct: 83  VLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCTAGVAR 142

Query: 119 SNGADIWAPIKTTSPKFEKAITQFH 143
           SNGADIWAP+KT SPKFEK I+ F+
Sbjct: 143 SNGADIWAPVKTISPKFEKHISPFN 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145311|ref|XP_002325599.1| predicted protein [Populus trichocarpa] gi|222862474|gb|EEE99980.1| predicted protein [Populus trichocarpa]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/142 (76%), Positives = 125/142 (88%)

Query: 2   MENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTASV 61
           MENKRSPC+VD G+L +L +KRHKAD SIS KERKEKLGERI+ALQQLVSPYGKTDTASV
Sbjct: 1   MENKRSPCSVDHGTLTSLATKRHKADFSISTKERKEKLGERIVALQQLVSPYGKTDTASV 60

Query: 62  LWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNG 121
           L EAMEYI+FLHEQV+VLSAPYLQ    A++Q L Q+SL ++GLCLVPIS TAG+ARSNG
Sbjct: 61  LMEAMEYIRFLHEQVQVLSAPYLQGTSTAQMQGLGQHSLESKGLCLVPISYTAGIARSNG 120

Query: 122 ADIWAPIKTTSPKFEKAITQFH 143
           ADIWAPIK+ SPK  K+I+QFH
Sbjct: 121 ADIWAPIKSPSPKCNKSISQFH 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726618|ref|NP_001235597.1| uncharacterized protein LOC100527660 [Glycine max] gi|255632876|gb|ACU16791.1| unknown [Glycine max]

 Score =  228 bits (581), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 110/144 (76%), Positives = 126/144 (87%), Gaps = 1/144 (0%)

Query: 1   MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTAS 60
           MME+KR PC+VDQ S  ++ SKR KADLSIS KERKEK+GERI+ALQQLVSPYGKTDT+S
Sbjct: 24  MMEHKRRPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSS 83

Query: 61  VLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSN 120
           VL EAMEYI FLH+QVK+LSAPYL+S PAAK+Q +E  SLR+RGLCLVP+S T GVA SN
Sbjct: 84  VLKEAMEYIGFLHKQVKLLSAPYLESSPAAKMQGVEPCSLRSRGLCLVPVSVTIGVAESN 143

Query: 121 GADIWAPIK-TTSPKFEKAITQFH 143
           GADIWAPIK TTSPKFEK ++QFH
Sbjct: 144 GADIWAPIKTTTSPKFEKDVSQFH 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521467|ref|XP_003529377.1| PREDICTED: transcription factor bHLH113-like [Glycine max]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/144 (75%), Positives = 127/144 (88%), Gaps = 1/144 (0%)

Query: 1   MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTAS 60
           MME+KRSPC+VDQ S  ++ SKR KADLSIS KERKEK+G+RI+ALQQLVSPYGKTDT+S
Sbjct: 24  MMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKEKIGKRIVALQQLVSPYGKTDTSS 83

Query: 61  VLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSN 120
           VL EAMEYI FLH+QVK+LSAPYL+S PAAK+Q +E  SLR+RGLCLVP+S T GVA +N
Sbjct: 84  VLKEAMEYIGFLHKQVKLLSAPYLESSPAAKMQGMEPCSLRSRGLCLVPVSFTIGVAETN 143

Query: 121 GADIWAPIK-TTSPKFEKAITQFH 143
           GADIWAPIK TTSPKFEK ++QFH
Sbjct: 144 GADIWAPIKTTTSPKFEKDVSQFH 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588215|ref|XP_002534538.1| transcription factor, putative [Ricinus communis] gi|223525089|gb|EEF27845.1| transcription factor, putative [Ricinus communis]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/119 (87%), Positives = 110/119 (92%)

Query: 21  SKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLS 80
           +KRHKADLSIS KERKEKLGERI+ALQQLVSPYGKTDTASVL EAMEYI+FLHEQVKVLS
Sbjct: 1   TKRHKADLSISTKERKEKLGERIVALQQLVSPYGKTDTASVLLEAMEYIRFLHEQVKVLS 60

Query: 81  APYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGADIWAPIKTTSPKFEKAI 139
           APYLQ  P  ++QELEQYSLRNRGLCLVPI+CT GV RSNGADIWAPIK TSPKFEKAI
Sbjct: 61  APYLQGAPTTQMQELEQYSLRNRGLCLVPITCTIGVDRSNGADIWAPIKNTSPKFEKAI 119

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503964|gb|AFK40048.1| unknown [Lotus japonicus]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 124/144 (86%), Gaps = 1/144 (0%)

Query: 1   MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTAS 60
           M+ +KRSPC+VDQ S  ++ SK+ KADLS+S+K+RKEK+GERI+ALQQLVSPYGKTDT+S
Sbjct: 24  MIGHKRSPCSVDQSSYTSIASKKQKADLSMSSKDRKEKVGERIVALQQLVSPYGKTDTSS 83

Query: 61  VLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSN 120
           VL EAMEYI FLH+QVK+LSAPYL+S PA  ++ +E  SLRNRGLCLVP+S T GVA SN
Sbjct: 84  VLNEAMEYIGFLHKQVKLLSAPYLESSPATMMEGIEPCSLRNRGLCLVPVSITMGVAESN 143

Query: 121 GADIWAPIKTTSPKFEKAI-TQFH 143
           GADIWAPIKTTSPK EK I +QFH
Sbjct: 144 GADIWAPIKTTSPKSEKDIVSQFH 167

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434106|ref|XP_002273925.1| PREDICTED: transcription factor bHLH113 [Vitis vinifera] gi|147799457|emb|CAN65949.1| hypothetical protein VITISV_012226 [Vitis vinifera] gi|296084284|emb|CBI24672.3| unnamed protein product [Vitis vinifera]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 107/136 (78%), Positives = 118/136 (86%), Gaps = 1/136 (0%)

Query: 1   MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTAS 60
           M E+KRSP +VDQG L +L  KR K DL+IS KERKEK+GERI ALQQLVSP+GKTDTAS
Sbjct: 1   MAEHKRSPISVDQGGLTSLAPKRQKPDLTISTKERKEKVGERIAALQQLVSPFGKTDTAS 60

Query: 61  VLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSN 120
           VL EAMEYI+FL EQVKVLSAPYLQS   AK+QELE+YSLR+RGLCLVPIS T GVARSN
Sbjct: 61  VLLEAMEYIRFLQEQVKVLSAPYLQSTTTAKMQELERYSLRSRGLCLVPISYTVGVARSN 120

Query: 121 GADIWAPIKT-TSPKF 135
           GADIWAPIKT +SPKF
Sbjct: 121 GADIWAPIKTDSSPKF 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475557|ref|XP_003608064.1| Transcription factor bHLH [Medicago truncatula] gi|355509119|gb|AES90261.1| Transcription factor bHLH [Medicago truncatula]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 121/142 (85%)

Query: 1   MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTAS 60
           MM +KRSPC+VDQ +  ++ SK+ K DLSIS K+RKEK+GERI+ALQQLVSPYGKTDT+S
Sbjct: 24  MMGHKRSPCSVDQSNYNSIASKKQKPDLSISTKDRKEKIGERIVALQQLVSPYGKTDTSS 83

Query: 61  VLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSN 120
           VL EAM+YI FLH+QVK+LSAPYL++ PA ++Q+ E  SLR+RGLC+VP+S T GVA  N
Sbjct: 84  VLKEAMDYIGFLHKQVKLLSAPYLETAPATQLQDTESCSLRSRGLCIVPVSFTNGVAEGN 143

Query: 121 GADIWAPIKTTSPKFEKAITQF 142
           GADIWAPIKTTSPK EK ++QF
Sbjct: 144 GADIWAPIKTTSPKHEKDVSQF 165

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475561|ref|XP_003608066.1| Transcription factor bHLH [Medicago truncatula] gi|355509121|gb|AES90263.1| Transcription factor bHLH [Medicago truncatula]

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 121/142 (85%)

Query: 1   MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTAS 60
           MM +KRSPC+VDQ +  ++ SK+ K DLSIS K+RKEK+GERI+ALQQLVSPYGKTDT+S
Sbjct: 1   MMGHKRSPCSVDQSNYNSIASKKQKPDLSISTKDRKEKIGERIVALQQLVSPYGKTDTSS 60

Query: 61  VLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSN 120
           VL EAM+YI FLH+QVK+LSAPYL++ PA ++Q+ E  SLR+RGLC+VP+S T GVA  N
Sbjct: 61  VLKEAMDYIGFLHKQVKLLSAPYLETAPATQLQDTESCSLRSRGLCIVPVSFTNGVAEGN 120

Query: 121 GADIWAPIKTTSPKFEKAITQF 142
           GADIWAPIKTTSPK EK ++QF
Sbjct: 121 GADIWAPIKTTSPKHEKDVSQF 142

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2045263	153	AT2G31730 [Arabidopsis thalian	0.874	0.816	0.648	1.8e-39
UNIPROTKB|Q7X7U7	156	OSJNBb0091E11.4 "OJ990528_30.9	0.797	0.730	0.558	3.3e-31
TAIR|locus:2090679	270	AT3G19500 [Arabidopsis thalian	0.853	0.451	0.533	5.7e-27
UNIPROTKB|Q657Z3	387	P0005A05.10 "Putative ethylene	0.608	0.224	0.539	8.4e-25
TAIR|locus:2061609	362	AT2G20100 [Arabidopsis thalian	0.475	0.187	0.571	7.8e-24
TAIR|locus:2031978	171	AT1G05710 [Arabidopsis thalian	0.608	0.508	0.617	8.7e-24
UNIPROTKB|Q8L4Y9	434	OJ1103_E04.128 "BHLH transcrip	0.860	0.283	0.481	1.6e-23
UNIPROTKB|Q94HA7	317	OSJNBb0048A17.16 "Os03g0759700	0.580	0.261	0.612	1e-22
UNIPROTKB|Q6K7V4	397	P0017G06.33 "Ethylene-responsi	0.377	0.136	0.703	2e-22
TAIR|locus:2007263	250	AT1G49830 [Arabidopsis thalian	0.769	0.44	0.495	2.1e-22

TAIR|locus:2045263 AT2G31730 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 85/131 (64%), Positives = 106/131 (80%)

Query:     1 MMENKRSPCAVDQGSLPTLTSKRHKA-DLSISAKERKEKLGERIIALQQLVSPYGKTDTA 59
             MME KR+  +++   +     KRHK+ DLS S+KERK+KL ERI ALQQLVSPYGKTDTA
Sbjct:    11 MMETKRNVYSLEDNKI-----KRHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTDTA 65

Query:    60 SVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARS 119
             SVL E M+YIQFL EQVKVLSAPYLQ+ P+   +E+E+YSLR++GLCLVP+  T+ VA++
Sbjct:    66 SVLLEGMQYIQFLQEQVKVLSAPYLQATPSTTEEEVEEYSLRSKGLCLVPLEYTSEVAQT 125

Query:   120 NGADIWAPIKT 130
             NGADIWAP+KT
Sbjct:   126 NGADIWAPVKT 136

GO:0005634 "nucleus" evidence=ISM

GO:0009723 "response to ethylene stimulus" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

UNIPROTKB|Q7X7U7 OSJNBb0091E11.4 "OJ990528_30.9 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 67/120 (55%), Positives = 93/120 (77%)

Query:    18 TLTSKRHK----ADLSISAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLH 73
             ++TSK+ +     D  +S KE+K+K+GER+ ALQQLVSP+GKTDTASVL EA  YI+FLH
Sbjct:    34 SMTSKKPRNTSPRDAPVSPKEKKDKIGERVAALQQLVSPFGKTDTASVLQEASGYIKFLH 93

Query:    74 EQVKVLSAPYLQS--MPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGADIWAPIKTT 131
             +Q++VLS+PY+++  +P A  ++ + YSLRNRGLCLVP+  T  + +SNGAD+WAP  TT
Sbjct:    94 QQLEVLSSPYMRAPPVPGAAPEDPDHYSLRNRGLCLVPVDQTLQLTQSNGADLWAPANTT 153

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2090679 AT3G19500 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 71/133 (53%), Positives = 86/133 (64%)

Query:    12 DQGSLPTLTSKRHKADLSIS-AKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQ 70
             DQ   P    KR++   S+  AK RKE+LGERI ALQQLVSPYGKTD ASVL EAM YI+
Sbjct:   132 DQNRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIK 191

Query:    71 FLHEQVKVLSAPYL--QSMPAAKVQ-----ELEQYSLRNRGLCLVPISCTAGVARSNGAD 123
             FL +Q++VL +PYL   S+    V       ++   LR+RGLCLVP+S T  V  SNGAD
Sbjct:   192 FLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGAD 251

Query:   124 IWAPIK---TTSP 133
              W+P     TTSP
Sbjct:   252 FWSPATMGHTTSP 264

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q657Z3 P0005A05.10 "Putative ethylene-responsive protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 214 (80.4 bits), Expect = 8.4e-25, Sum P(2) = 8.4e-25
 Identities = 48/89 (53%), Positives = 60/89 (67%)

Query:     3 ENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTASVL 62
             E++ S         P L S  H + +  S K RKEKLG+RI ALQQLVSP+GKTDTASVL
Sbjct:   244 EHRSSTALPPSSKKPRLES--HSSSMLPSFKVRKEKLGDRIAALQQLVSPFGKTDTASVL 301

Query:    63 WEAMEYIQFLHEQVKVLSAPYLQSMPAAK 91
              EA+ YI+FL +QV+ LS PYL+S   +K
Sbjct:   302 MEAIGYIKFLQDQVETLSGPYLRSSKNSK 330

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2061609 AT2G20100 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 7.8e-24, Sum P(2) = 7.8e-24
 Identities = 40/70 (57%), Positives = 51/70 (72%)

Query:    33 KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKV 92
             K RKEKLG RI +L QLVSP+GKTDTASVL EA+ YI+FLH Q++ LS PY  + P+   
Sbjct:   219 KVRKEKLGGRIASLHQLVSPFGKTDTASVLSEAIGYIRFLHSQIEALSLPYFGT-PSRN- 276

Query:    93 QELEQYSLRN 102
               + Q++ RN
Sbjct:   277 NMMHQHAQRN 286

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2031978 AT1G05710 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 58/94 (61%), Positives = 74/94 (78%)

Query:     1 MMENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTAS 60
             MMENKR+ C++ + S+     KRHK+DLS S+KERK+K+GERI ALQQ+VSPYGKTDTAS
Sbjct:    10 MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTAS 64

Query:    61 VLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQE 94
             VL +AM YI+FLHEQVKV S+  + SM  + + E
Sbjct:    65 VLLDAMHYIEFLHEQVKVCSS--IPSMIHSSLSE 96

GO:0005634 "nucleus" evidence=ISM

GO:0009723 "response to ethylene stimulus" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

UNIPROTKB|Q8L4Y9 OJ1103_E04.128 "BHLH transcription factor-like protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 273 (101.2 bits), Expect = 1.6e-23, P = 1.6e-23
 Identities = 66/137 (48%), Positives = 87/137 (63%)

Query:     3 ENKRSP-CAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLVSPYGKTDTASV 61
             + KRS   A  +GS  T  SK      + S K  K KLG++I ALQQ+VSP+GKTDTASV
Sbjct:   292 KKKRSEEAAGSEGS--TKKSKHEATSPTSSLKVPKVKLGDKITALQQIVSPFGKTDTASV 349

Query:    62 LWEAMEYIQFLHEQVKVLSAPYLQSMPAA----------KVQELEQYSLRNRGLCLVPIS 111
             L+EA+ YI++LHEQV++LS PY++S  +           K +   +  LR+RGLCLVP+S
Sbjct:   350 LYEAINYIKWLHEQVQLLSDPYMKSSSSKDYNAWGGLDRKEKADAEVDLRSRGLCLVPVS 409

Query:   112 CTAGVAR-SNGADIWAP 127
             CT  V R +NG D W P
Sbjct:   410 CTPQVYRDNNGPDYWTP 426

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q94HA7 OSJNBb0048A17.16 "Os03g0759700 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 60/98 (61%), Positives = 75/98 (76%)

Query:    35 RKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMP-AAKVQ 93
             R+E+LGERIIALQQLVSP+GK+DTASVL EA+ YI+FLH+QV+VLS+PYLQ +P +A+V 
Sbjct:   161 RRERLGERIIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVP 220

Query:    94 ELEQYS--------------LRNRGLCLVPISCTAGVA 117
             E E+ +              LR+RGLCLVPISCT  VA
Sbjct:   221 EQERGTPAAEEQPPALRPSDLRSRGLCLVPISCTEHVA 258

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q6K7V4 P0017G06.33 "Ethylene-responsive family protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 192 (72.6 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
 Identities = 38/54 (70%), Positives = 46/54 (85%)

Query:    31 SAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYL 84
             + K RKEKLG+RI AL QLVSP+GKTDTASVL EA+ YI+FLH Q++ LS+PYL
Sbjct:   235 TVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSSPYL 288

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2007263 AT1G49830 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 58/117 (49%), Positives = 77/117 (65%)

Query:    17 PTLTSKRHKADLSI-SAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQ 75
             P    KR +   S+ +AK +KEK+GE+I  LQ LVSPYGKTD ASVL E M YI+FL +Q
Sbjct:   107 PGKRCKRDQKKSSLGNAKVKKEKVGEKITTLQHLVSPYGKTDAASVLHETMGYIKFLQDQ 166

Query:    76 VKVLSAPYLQSMP-----AAKVQE-LEQYSLRNRGLCLVPISCTAGVARSNGADIWA 126
             V+VLS PY +  P       +V   ++   LR+ GLCLVP++ T  VA +NGAD+W+
Sbjct:   167 VQVLSTPYFKHNPLDDEDTGEVNPTMKVKELRSNGLCLVPLAWTVHVANTNGADLWS 223

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01420061 hypothetical protein (142 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
smart00353	53	smart00353, HLH, helix loop helix domain	2e-04
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	9e-04

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 29 SISAKERKEKLGERIIALQQLVSPYG---KTDTASVLWEAMEYIQFLHEQVK 77
          +   + R+ K+ E    L+ L+       K   A +L  A+EYI+ L E+++
Sbjct: 1  NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 35.3 bits (82), Expect = 9e-04
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 21 SKRHKADLSISAKERKEKLGERIIALQQLVSPYG---KTDTASVLWEAMEYIQFLHEQVK 77
          S+R     ++  + R+E++ +    L+ L+       K   A +L +A++YI+ L E ++
Sbjct: 3  SRREAH--NLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.55
smart00353	53	HLH helix loop helix domain.	99.5
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.5
KOG1318	411	consensus Helix loop helix transcription factor EB	99.0
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.98
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.73
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.52
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.47
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	98.15
KOG4029	228	consensus Transcription factor HAND2/Transcription	98.0
KOG0561	373	consensus bHLH transcription factor [Transcription	97.79
PLN03217	93	transcription factor ATBS1; Provisional	97.72
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.57
KOG3910	632	consensus Helix loop helix transcription factor [T	95.57
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	94.87
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	92.23
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	89.48
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	87.55
KOG3898	254	consensus Transcription factor NeuroD and related	83.62
KOG4395	285	consensus Transcription factor Atonal, contains HT	80.38

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.55  E-value=8e-15  Score=94.47  Aligned_cols=54  Identities=22%  Similarity=0.460  Sum_probs=49.9

Q ss_pred             ccccCcHHHHHHHHHHHHHHHHHHhccCCC---CCCChHHHHHHHHHHHHHHHHHHH
Q 032324           24 HKADLSISAKERKEKLGERIIALQQLVSPY---GKTDTASVLWEAMEYIQFLHEQVK   77 (143)
Q Consensus        24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~---~K~dkAsvL~eAI~YIk~Lq~qv~   77 (143)
                      .+..|+..||.||++||+.|..|+.+||+.   .|+||++||+.||+||++|+.+++
T Consensus         4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            345699999999999999999999999987   899999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.50  E-value=8e-14  Score=88.31  Aligned_cols=49  Identities=29%  Similarity=0.453  Sum_probs=45.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHhccC---CCCCCChHHHHHHHHHHHHHHHHHHH
Q 032324           29 SISAKERKEKLGERIIALQQLVS---PYGKTDTASVLWEAMEYIQFLHEQVK   77 (143)
Q Consensus        29 ~~~Er~RR~kI~~~~~~L~~LVP---~~~K~dkAsvL~eAI~YIk~Lq~qv~   77 (143)
                      +..||.||++||+.|..|+.+||   +..|+||++||.+||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999   47799999999999999999999886

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.50  E-value=2.9e-14  Score=91.66  Aligned_cols=49  Identities=22%  Similarity=0.439  Sum_probs=45.9

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHHHHHHHH
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSPY-----GKTDTASVLWEAMEYIQFLH   73 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~~-----~K~dkAsvL~eAI~YIk~Lq   73 (143)
                      +..|+..||+||++||+.|..|+.+||..     .|+||++||+.||+||++||
T Consensus         2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            35699999999999999999999999976     78999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.00  E-value=5.5e-10  Score=98.11  Aligned_cols=54  Identities=22%  Similarity=0.427  Sum_probs=48.4

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCCC----CCCChHHHHHHHHHHHHHHHHHHHH
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSPY----GKTDTASVLWEAMEYIQFLHEQVKV   78 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~~----~K~dkAsvL~eAI~YIk~Lq~qv~~   78 (143)
                      |..|+..||+||++||++|.+|..|||++    .+.+|..||..+.+||+.||+..+.
T Consensus       234 rd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~  291 (411)
T KOG1318|consen  234 RDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR  291 (411)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence            34599999999999999999999999976    4677999999999999999987663

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.98  E-value=2.8e-10  Score=91.50  Aligned_cols=59  Identities=27%  Similarity=0.425  Sum_probs=51.4

Q ss_pred             cccccCcHHHHHHHHHHHHHHHHHHhccCCC-------CCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 032324           23 RHKADLSISAKERKEKLGERIIALQQLVSPY-------GKTDTASVLWEAMEYIQFLHEQVKVLSA   81 (143)
Q Consensus        23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~-------~K~dkAsvL~eAI~YIk~Lq~qv~~L~~   81 (143)
                      ++|..|..+||+||+.|+.....|+.|||.+       .|+.||.||..+|+||.+|+.++.+-+.
T Consensus        61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~  126 (229)
T KOG1319|consen   61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEE  126 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456699999999999999999999999943       3888999999999999999988766554

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.73  E-value=9.6e-09  Score=85.20  Aligned_cols=55  Identities=16%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             ccccCcHHHHHHHHHHHHHHHHHHhccCC--------CCCCChHHHHHHHHHHHHHHHHHHHH
Q 032324           24 HKADLSISAKERKEKLGERIIALQQLVSP--------YGKTDTASVLWEAMEYIQFLHEQVKV   78 (143)
Q Consensus        24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~--------~~K~dkAsvL~eAI~YIk~Lq~qv~~   78 (143)
                      .+..+-+.||+||+|||+.+.+|+.||+.        -.|++||.||+-|++|++.||.+...
T Consensus        32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~   94 (250)
T KOG4304|consen   32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA   94 (250)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence            34458999999999999999999999993        27899999999999999999986543

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.52  E-value=5.5e-08  Score=92.20  Aligned_cols=65  Identities=23%  Similarity=0.327  Sum_probs=58.5

Q ss_pred             cccccCcHHHHHHHHHHHHHHHHHHhccCC-CCCCChHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 032324           23 RHKADLSISAKERKEKLGERIIALQQLVSP-YGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSM   87 (143)
Q Consensus        23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~-~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~~~~~   87 (143)
                      -.|..|+++||+.|-.|||+|.+|+.+||+ ..|+.|.++|..||+||++|+...+.+..+.+...
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~  340 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR  340 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence            446679999999999999999999999997 67999999999999999999999988887766554

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.47  E-value=2.3e-07  Score=87.28  Aligned_cols=55  Identities=24%  Similarity=0.419  Sum_probs=49.6

Q ss_pred             cccccccCcHHHHHHHHHHHHHHHHHHhccCCC----CCCChHHHHHHHHHHHHHHHHH
Q 032324           21 SKRHKADLSISAKERKEKLGERIIALQQLVSPY----GKTDTASVLWEAMEYIQFLHEQ   75 (143)
Q Consensus        21 ~k~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~----~K~dkAsvL~eAI~YIk~Lq~q   75 (143)
                      .++.+..|+.+||+||+++|.-|.+|..|||.+    .|+||.+||.+||++||.++++
T Consensus        17 ~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   17 DRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            344466799999999999999999999999975    5999999999999999999885

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=98.15  E-value=5.4e-06  Score=68.38  Aligned_cols=58  Identities=24%  Similarity=0.215  Sum_probs=48.6

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC--CCCCC-hHHHHHHHHHHHHHHHHHHHHhccc
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSP--YGKTD-TASVLWEAMEYIQFLHEQVKVLSAP   82 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~--~~K~d-kAsvL~eAI~YIk~Lq~qv~~L~~~   82 (143)
                      +..|+.-||+||+.|.++|..|+.+||.  +.+.. +++||..|++||+.|+.+....+..
T Consensus        60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~  120 (232)
T KOG2483|consen   60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQD  120 (232)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHH
Confidence            3459999999999999999999999995  23333 6999999999999999987765543

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=98.00  E-value=2.7e-05  Score=63.01  Aligned_cols=62  Identities=18%  Similarity=0.289  Sum_probs=53.6

Q ss_pred             cccccCcHHHHHHHHHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHHHHHHHHHhccccc
Q 032324           23 RHKADLSISAKERKEKLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQFLHEQVKVLSAPYL   84 (143)
Q Consensus        23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~~   84 (143)
                      ..+..++..||.|=.-+|..|..|+.+||.    ..|..|..+|..||.||++|+.-++.-+..+.
T Consensus       108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~~  173 (228)
T KOG4029|consen  108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPLN  173 (228)
T ss_pred             hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCCC
Confidence            334457778999999999999999999993    56899999999999999999999988887664

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.79  E-value=2.4e-05  Score=67.20  Aligned_cols=50  Identities=18%  Similarity=0.292  Sum_probs=45.1

Q ss_pred             CcHHHHHHHHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 032324           28 LSISAKERKEKLGERIIALQQLVSP--YGKTDTASVLWEAMEYIQFLHEQVK   77 (143)
Q Consensus        28 h~~~Er~RR~kI~~~~~~L~~LVP~--~~K~dkAsvL~eAI~YIk~Lq~qv~   77 (143)
                      -+..||+|=..||..|..|+.|+|.  +.|..||.||+.+.+||..|..+.-
T Consensus        64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt  115 (373)
T KOG0561|consen   64 ANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKT  115 (373)
T ss_pred             hcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence            5667999999999999999999994  7899999999999999999987543

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.72  E-value=7.8e-05  Score=53.35  Aligned_cols=49  Identities=35%  Similarity=0.484  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHhccCC------CCCCChHHHHHHHHHHHHHHHHHHHHhccccc
Q 032324           36 KEKLGERIIALQQLVSP------YGKTDTASVLWEAMEYIQFLHEQVKVLSAPYL   84 (143)
Q Consensus        36 R~kI~~~~~~L~~LVP~------~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~~   84 (143)
                      -+.|+|-+..||+|+|.      ..|...+-||+||..||+.||.+|..|++...
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs   73 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS   73 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999995      34566677999999999999999999987543

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.57  E-value=0.00019  Score=60.22  Aligned_cols=59  Identities=19%  Similarity=0.278  Sum_probs=49.6

Q ss_pred             ccCcHHHHHHHHHHHHHHHHHHhc-cC-CCCCCChHHHHHHHHHHHHHHHHHHHHhccccc
Q 032324           26 ADLSISAKERKEKLGERIIALQQL-VS-PYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYL   84 (143)
Q Consensus        26 ~~h~~~Er~RR~kI~~~~~~L~~L-VP-~~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~~   84 (143)
                      .+-.+-||+|=.|+||.|.+|+.= ++ +....-|..||..||+||..||.-++.+.+...
T Consensus       120 KAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  120 KAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            345678999999999999999554 44 567899999999999999999999998876543

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=95.57  E-value=0.011  Score=53.92  Aligned_cols=59  Identities=17%  Similarity=0.191  Sum_probs=47.6

Q ss_pred             cccccccCcHHHHHHHHHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHHHHHHHHHh
Q 032324           21 SKRHKADLSISAKERKEKLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQFLHEQVKVL   79 (143)
Q Consensus        21 ~k~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~Lq~qv~~L   79 (143)
                      -|.+|.+++.-||.|=.-|||.|++|-.+.--    .....|--||..|+.-|-.|++||.+-
T Consensus       523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER  585 (632)
T KOG3910|consen  523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER  585 (632)
T ss_pred             HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence            34455567888888888999999999887653    334567889999999999999999873

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=94.87  E-value=0.014  Score=46.02  Aligned_cols=51  Identities=25%  Similarity=0.435  Sum_probs=45.7

Q ss_pred             cCcHHHHHHHHHHHHHHHHHHhccC--CCCCCChHHHHHHHHHHHHHHHHHHH
Q 032324           27 DLSISAKERKEKLGERIIALQQLVS--PYGKTDTASVLWEAMEYIQFLHEQVK   77 (143)
Q Consensus        27 ~h~~~Er~RR~kI~~~~~~L~~LVP--~~~K~dkAsvL~eAI~YIk~Lq~qv~   77 (143)
                      .|++-||+|=..+|+.|.+||.++|  +..|..|.--|.-|..||-||-.-.+
T Consensus        81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~  133 (173)
T KOG4447|consen   81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ  133 (173)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence            4888999999999999999999999  57889999999999999999976443

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=92.23  E-value=0.11  Score=49.12  Aligned_cols=44  Identities=23%  Similarity=0.367  Sum_probs=38.3

Q ss_pred             CcHHHHHHHHHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHH
Q 032324           28 LSISAKERKEKLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQF   71 (143)
Q Consensus        28 h~~~Er~RR~kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~   71 (143)
                      .--+.|.||.|-|+-|.+|..++|-    ....|||+|+.-||-|+|-
T Consensus        50 SRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   50 SRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            3457788999999999999999993    4679999999999999874

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=89.48  E-value=0.42  Score=43.28  Aligned_cols=43  Identities=23%  Similarity=0.357  Sum_probs=38.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHH
Q 032324           29 SISAKERKEKLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQF   71 (143)
Q Consensus        29 ~~~Er~RR~kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~   71 (143)
                      ..+.|.||++-|-.|.+|.+++|-    .+..|||+|+.-|--|||-
T Consensus         6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm   52 (598)
T KOG3559|consen    6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM   52 (598)
T ss_pred             hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence            346789999999999999999993    4669999999999999985

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=87.55  E-value=0.48  Score=44.13  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=37.0

Q ss_pred             CcHHHHHHHHHHHHHHHHHHhccC----CCCCCChHHHHHHHHHHHH
Q 032324           28 LSISAKERKEKLGERIIALQQLVS----PYGKTDTASVLWEAMEYIQ   70 (143)
Q Consensus        28 h~~~Er~RR~kI~~~~~~L~~LVP----~~~K~dkAsvL~eAI~YIk   70 (143)
                      .+.-.|+-|||+|..++.|.+|+|    ...|.||-|||.-++-|++
T Consensus        29 kSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   29 KSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR   75 (712)
T ss_pred             cCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence            334456679999999999999999    3689999999999999986

>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]

Probab=83.62  E-value=1.2  Score=37.09  Aligned_cols=49  Identities=22%  Similarity=0.273  Sum_probs=40.8

Q ss_pred             cCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHH
Q 032324           27 DLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQ   75 (143)
Q Consensus        27 ~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~q   75 (143)
                      .-+.-||.|--.+|+-++.|+.++|.   ..|+.|...|.-|-.||..|++-
T Consensus        75 kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~  126 (254)
T KOG3898|consen   75 KANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV  126 (254)
T ss_pred             cccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence            35566888888899999999999994   57888999998888998888753

>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]

Probab=80.38  E-value=3.2  Score=35.29  Aligned_cols=54  Identities=19%  Similarity=0.131  Sum_probs=44.3

Q ss_pred             cccccCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHH
Q 032324           23 RHKADLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQV   76 (143)
Q Consensus        23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv   76 (143)
                      +++..-+.-||+|=..+|..|+.|+..||.   ..|..|-..|+.|-.||--|-...
T Consensus       173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l  229 (285)
T KOG4395|consen  173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL  229 (285)
T ss_pred             hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence            444556778999999999999999999995   456778889999999998876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	7e-07
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	3e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 43.5 bits (103), Expect = 7e-07
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 33 KERKEKLGERIIALQQLV-SPYGKTDTASVLWEAMEYIQFLHEQVKVLSA 81
          K  +  + ++II L+ LV     K + ++VL +A++YI+FL    + L  
Sbjct: 15 KRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 33 KERKEKLGERIIALQQLV------SPYGKTDTASVLWEAMEYIQFLHEQVK 77
          + R++K+   I+ L +++      S         +L +A +YIQ L +   
Sbjct: 14 RRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.7
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.67
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.64
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.62
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.61
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.57
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.56
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.56
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.52
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.5
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.41
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.24
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.15
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.14
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	99.01
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.88
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.72
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	98.28

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.70  E-value=9.7e-18  Score=116.29  Aligned_cols=60  Identities=27%  Similarity=0.453  Sum_probs=55.9

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCCC-CCCChHHHHHHHHHHHHHHHHHHHHhccccc
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSPY-GKTDTASVLWEAMEYIQFLHEQVKVLSAPYL   84 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~~-~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~~   84 (143)
                      +..|+.+||+||++||++|.+|+.|||++ .|+|||+||.+||+||++||.+++.|+....
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~   67 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL   67 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44699999999999999999999999986 8999999999999999999999999997654

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.67  E-value=9.1e-17  Score=109.44  Aligned_cols=58  Identities=19%  Similarity=0.297  Sum_probs=53.4

Q ss_pred             ccccCcHHHHHHHHHHHHHHHHHHhccCC-CCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 032324           24 HKADLSISAKERKEKLGERIIALQQLVSP-YGKTDTASVLWEAMEYIQFLHEQVKVLSA   81 (143)
Q Consensus        24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~-~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~   81 (143)
                      .+..|+.+||+||++||++|.+|+.|||+ ..|+||++||+.||+||++||.++..|+-
T Consensus         8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~   66 (71)
T 4h10_B            8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH   66 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            34569999999999999999999999996 46999999999999999999999998874

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.64  E-value=2.5e-16  Score=116.01  Aligned_cols=59  Identities=17%  Similarity=0.308  Sum_probs=51.8

Q ss_pred             ccccCcHHHHHHHHHHHHHHHHHHhccCCC----CCCChHHHHHHHHHHHHHHHHHHHHhccc
Q 032324           24 HKADLSISAKERKEKLGERIIALQQLVSPY----GKTDTASVLWEAMEYIQFLHEQVKVLSAP   82 (143)
Q Consensus        24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~----~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~   82 (143)
                      .+..|+.+||+||++||++|.+|+.|||++    .|+|||+||..||+||++||.+++.|++.
T Consensus        27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~   89 (118)
T 4ati_A           27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   89 (118)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344699999999999999999999999975    47889999999999999999999999863

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.62  E-value=5.6e-17  Score=107.79  Aligned_cols=53  Identities=17%  Similarity=0.297  Sum_probs=48.0

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC-------CCCCChHHHHHHHHHHHHHHHHHHH
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSP-------YGKTDTASVLWEAMEYIQFLHEQVK   77 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~-------~~K~dkAsvL~eAI~YIk~Lq~qv~   77 (143)
                      +..|..+||+||++||+.|.+|+.|||+       .++.+||+||+.||+||++||++++
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            4569999999999999999999999994       3677899999999999999998763

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.61  E-value=1.7e-16  Score=105.03  Aligned_cols=53  Identities=21%  Similarity=0.388  Sum_probs=48.5

Q ss_pred             ccccCcHHHHHHHHHHHHHHHHHHhccCCCC------CCChHHHHHHHHHHHHHHHHHH
Q 032324           24 HKADLSISAKERKEKLGERIIALQQLVSPYG------KTDTASVLWEAMEYIQFLHEQV   76 (143)
Q Consensus        24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~~------K~dkAsvL~eAI~YIk~Lq~qv   76 (143)
                      .+..|+.+||+||++||+.|.+|+.|||++.      |+|||+||.+||+||++||.+.
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            3466999999999999999999999999754      7899999999999999999875

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.57  E-value=4.5e-16  Score=106.35  Aligned_cols=52  Identities=27%  Similarity=0.297  Sum_probs=47.2

Q ss_pred             cccccCcHHHHHHHHHHHHHHHHHHhccCCC----CCCChHHHHHHHHHHHHHHHH
Q 032324           23 RHKADLSISAKERKEKLGERIIALQQLVSPY----GKTDTASVLWEAMEYIQFLHE   74 (143)
Q Consensus        23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~----~K~dkAsvL~eAI~YIk~Lq~   74 (143)
                      ..+..|+.+||+||++||+.|.+|+.|||.+    .|+|||+||+.||+||+.|+.
T Consensus         8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            3445699999999999999999999999964    799999999999999999874

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.56  E-value=3.1e-15  Score=103.21  Aligned_cols=59  Identities=20%  Similarity=0.336  Sum_probs=54.2

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSP--YGKTDTASVLWEAMEYIQFLHEQVKVLSAPY   83 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~--~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~   83 (143)
                      +..|+..||+||+.||+.|..|+.+||.  ..|++|++||..||+||++|+.+++.|+...
T Consensus         3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~   63 (83)
T 1nkp_B            3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI   63 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999996  5899999999999999999999999987643

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.56  E-value=2.7e-15  Score=103.13  Aligned_cols=60  Identities=20%  Similarity=0.356  Sum_probs=54.9

Q ss_pred             ccccCcHHHHHHHHHHHHHHHHHHhccCCC--CCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324           24 HKADLSISAKERKEKLGERIIALQQLVSPY--GKTDTASVLWEAMEYIQFLHEQVKVLSAPY   83 (143)
Q Consensus        24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~--~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~   83 (143)
                      .+..|+..||+||..||+.|..|+.+||..  .|++|++||..||+||++|+.+++.|+...
T Consensus        12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~   73 (80)
T 1hlo_A           12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI   73 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445699999999999999999999999964  799999999999999999999999998754

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.52  E-value=9.2e-15  Score=102.66  Aligned_cols=58  Identities=17%  Similarity=0.294  Sum_probs=53.3

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHhccc
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQVKVLSAP   82 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~   82 (143)
                      +..|+..||+||+.||++|..|+.+||.   ..|++|++||..||+||++|+.+.+.|...
T Consensus         7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~   67 (88)
T 1nkp_A            7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE   67 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999996   469999999999999999999999887764

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.50  E-value=2.5e-14  Score=98.28  Aligned_cols=58  Identities=19%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             ccccCcHHHHHHHHHHHHHHHHHHhccCC---CCCC-ChHHHHHHHHHHHHHHHHHHHHhcc
Q 032324           24 HKADLSISAKERKEKLGERIIALQQLVSP---YGKT-DTASVLWEAMEYIQFLHEQVKVLSA   81 (143)
Q Consensus        24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~-dkAsvL~eAI~YIk~Lq~qv~~L~~   81 (143)
                      .|..|+..||+||+.||++|.+|+.+||.   ..|. .|++||..||+||++||+++++++.
T Consensus         5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34569999999999999999999999994   4555 7999999999999999999999886

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.41  E-value=2.6e-13  Score=93.81  Aligned_cols=59  Identities=20%  Similarity=0.161  Sum_probs=53.5

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQVKVLSAPY   83 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~   83 (143)
                      +..|+..||.||..|+++|.+|+++||.   ..|.+|++||..|++||+.|+++.+.|....
T Consensus         2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~   63 (80)
T 1nlw_A            2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI   63 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999999995   4788999999999999999999999888653

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.24  E-value=4e-12  Score=85.59  Aligned_cols=55  Identities=18%  Similarity=0.300  Sum_probs=49.3

Q ss_pred             ccccccCcHHHHHHHHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHH
Q 032324           22 KRHKADLSISAKERKEKLGERIIALQQLVSP--YGKTDTASVLWEAMEYIQFLHEQV   76 (143)
Q Consensus        22 k~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~--~~K~dkAsvL~eAI~YIk~Lq~qv   76 (143)
                      +..+..|+..||.|+..||+.|..|+.+||.  ..|++|+.+|..||+||.+|++.+
T Consensus        10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3445569999999999999999999999995  579999999999999999999865

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.15  E-value=4.4e-11  Score=99.53  Aligned_cols=55  Identities=20%  Similarity=0.342  Sum_probs=43.5

Q ss_pred             ccccccCcHHHHHHHHHHHHHHHHHHhccC-CCCCCChHHHHHHHHHHHHHHHHHH
Q 032324           22 KRHKADLSISAKERKEKLGERIIALQQLVS-PYGKTDTASVLWEAMEYIQFLHEQV   76 (143)
Q Consensus        22 k~~~~~h~~~Er~RR~kI~~~~~~L~~LVP-~~~K~dkAsvL~eAI~YIk~Lq~qv   76 (143)
                      +..+..|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+..-
T Consensus        10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            444556999999999999999999999999 5779999999999999999998754

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.14  E-value=4.3e-11  Score=78.64  Aligned_cols=53  Identities=21%  Similarity=0.233  Sum_probs=47.7

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHH
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQVK   77 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv~   77 (143)
                      +..++.-||.|+..||+.|..|+.+||.   ..|++|..+|..||+||.+|++.++
T Consensus         3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            3458889999999999999999999995   5689999999999999999998763

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.01  E-value=1.8e-10  Score=97.12  Aligned_cols=53  Identities=26%  Similarity=0.266  Sum_probs=48.0

Q ss_pred             cccccCcHHHHHHHHHHHHHHHHHHhccC----CCCCCChHHHHHHHHHHHHHHHHH
Q 032324           23 RHKADLSISAKERKEKLGERIIALQQLVS----PYGKTDTASVLWEAMEYIQFLHEQ   75 (143)
Q Consensus        23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP----~~~K~dkAsvL~eAI~YIk~Lq~q   75 (143)
                      ..+..|+.+||+||++||+.|.+|+.|||    ...|+||++||..||+|||.|+..
T Consensus        12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred             hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence            34456999999999999999999999999    678999999999999999999853

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.88  E-value=2.6e-09  Score=74.56  Aligned_cols=47  Identities=17%  Similarity=0.284  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHHHHHHHHHhccc
Q 032324           36 KEKLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQFLHEQVKVLSAP   82 (143)
Q Consensus        36 R~kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~   82 (143)
                      |..||++|.+|..|||+    ..|.+|++||..|++||++||..++.+.+.
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~   54 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   54 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999995    357999999999999999999988877653

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.72  E-value=3.5e-09  Score=71.43  Aligned_cols=46  Identities=15%  Similarity=0.166  Sum_probs=41.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHH
Q 032324           29 SISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHE   74 (143)
Q Consensus        29 ~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~   74 (143)
                      +.-||.|...||+.|..|+.+||.   ..|++|..+|..||+||..||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            345788889999999999999994   5789999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=98.28  E-value=1.9e-06  Score=61.53  Aligned_cols=50  Identities=16%  Similarity=0.168  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 032324           32 AKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQVKVLSA   81 (143)
Q Consensus        32 Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~   81 (143)
                      |+.|=..||+.|..|+.+||.   ..|+.|..+|.-||+||.+|++.++.-..
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~   85 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK   85 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            567777899999999999994   56899999999999999999998876443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	1e-10
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	1e-07
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	4e-06
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	4e-06
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	3e-05
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	2e-04

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (124), Expect = 1e-10
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 37 EKLGERIIALQQLV-SPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQ 85
            + ++II L+ LV     K   + VL +A++YI++L +    L    + 
Sbjct: 2  SSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMV 51

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (103), Expect = 1e-07
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 13/78 (16%)

Query: 2  MENKRSPCAVDQGSLPTLTSKRHKADLSISAKERKEKLGERIIALQQLV--SPYGKTDTA 59
          ME KR     D         +R  A  ++  + R  K+ E    L++    +P  +    
Sbjct: 1  MELKRKTTNAD---------RRKAA--TMRERRRLSKVNEAFETLKRSTSSNPNQRLPKV 49

Query: 60 SVLWEAMEYIQFLHEQVK 77
           +L  A+ YI+ L   ++
Sbjct: 50 EILRNAIRYIEGLQALLR 67

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (93), Expect = 4e-06
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 7/56 (12%)

Query: 29 SISAKERKEKLGERIIALQQLV-------SPYGKTDTASVLWEAMEYIQFLHEQVK 77
            + + R+ +L   +  L  L+       +       A+ +  A  YI+ L +   
Sbjct: 7  KHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 4e-06
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 33 KERKEKLGERIIALQQLV--SPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPY--LQSMP 88
          ++R++ + +   +L+  V      K   A +L +A EYIQ++  +          L+   
Sbjct: 11 RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN 70

Query: 89 AAKVQELEQ 97
          A   Q++  
Sbjct: 71 ALLEQQVRA 79

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 29 SISAKERKEKLGERIIALQQLV-SPYGKTDTASVLWEAMEYIQFLHEQVKVLSA 81
          +   K  +  + ++II L+ LV     K + ++VL +A++YI+FL    + L  
Sbjct: 11 NAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 21 SKRHKADLSISAKERKEKLGERIIALQQLV------SPYGKTDTASVLWEAMEYIQFLHE 74
           ++ +A  +   + R++K+   I+ L +++      S         +L +A +YIQ L +
Sbjct: 2  DEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61

Query: 75 QVK 77
             
Sbjct: 62 SNH 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.63
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.59
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.52
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.52

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=7.2e-17  Score=105.10  Aligned_cols=52  Identities=17%  Similarity=0.302  Sum_probs=48.3

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC-------CCCCChHHHHHHHHHHHHHHHHHH
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSP-------YGKTDTASVLWEAMEYIQFLHEQV   76 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~-------~~K~dkAsvL~eAI~YIk~Lq~qv   76 (143)
                      |..|+.+||+||++||+.|.+|+.|||+       ..|+|||+||+.||+||++||++|
T Consensus         3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            4569999999999999999999999993       579999999999999999999875

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.8e-16  Score=107.39  Aligned_cols=59  Identities=25%  Similarity=0.433  Sum_probs=54.4

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC-CCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSP-YGKTDTASVLWEAMEYIQFLHEQVKVLSAPY   83 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~-~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~   83 (143)
                      +..|+.+||+||++||+.|..|++|||+ .+|+||++||..||+||++|+.+++.|....
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~   66 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3469999999999999999999999997 5699999999999999999999999998654

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2.5e-16  Score=104.14  Aligned_cols=54  Identities=19%  Similarity=0.327  Sum_probs=49.1

Q ss_pred             ccccCcHHHHHHHHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 032324           24 HKADLSISAKERKEKLGERIIALQQLVSP--YGKTDTASVLWEAMEYIQFLHEQVK   77 (143)
Q Consensus        24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~--~~K~dkAsvL~eAI~YIk~Lq~qv~   77 (143)
                      .+..|+..||.||++||+.|..|+.|||+  ..|+||++||..||+||++||++|+
T Consensus        12 rR~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            34569999999999999999999999996  5689999999999999999998764

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-15  Score=102.60  Aligned_cols=59  Identities=20%  Similarity=0.161  Sum_probs=53.6

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQVKVLSAPY   83 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~   83 (143)
                      +..|+..||+||++||+.|.+|+++||+   ..|++|++||..||+||++|+.+++.|....
T Consensus         2 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~   63 (79)
T d1nlwa_           2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI   63 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999996   4589999999999999999999999887643

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2e-15  Score=102.41  Aligned_cols=59  Identities=20%  Similarity=0.336  Sum_probs=54.0

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSP--YGKTDTASVLWEAMEYIQFLHEQVKVLSAPY   83 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~--~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~   83 (143)
                      +..|+..||+||++||+.|.+|+++||+  ..|++|++||..||+||++|+.+++.|....
T Consensus         3 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~   63 (83)
T d1nkpb_           3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI   63 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999995  5789999999999999999999999988644

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.7e-16  Score=99.26  Aligned_cols=49  Identities=27%  Similarity=0.499  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhccCCC-CCCChHHHHHHHHHHHHHHHHHHHHhccccc
Q 032324           36 KEKLGERIIALQQLVSPY-GKTDTASVLWEAMEYIQFLHEQVKVLSAPYL   84 (143)
Q Consensus        36 R~kI~~~~~~L~~LVP~~-~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~~   84 (143)
                      |++||++|.+|+.+||++ .|+|||+||.+||+||++||.+++.|++++.
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~   50 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENM   50 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999975 6999999999999999999999999987654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.6e-15  Score=101.59  Aligned_cols=59  Identities=17%  Similarity=0.273  Sum_probs=53.6

Q ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324           25 KADLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQVKVLSAPY   83 (143)
Q Consensus        25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~   83 (143)
                      +..|+..||+||++||+.|..|+++||+   ..|++|++||..||+||++|+.+++.|....
T Consensus         7 R~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~   68 (88)
T d1nkpa_           7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE   68 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999995   3679999999999999999999999987643

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-15  Score=98.65  Aligned_cols=53  Identities=21%  Similarity=0.387  Sum_probs=47.9

Q ss_pred             ccccCcHHHHHHHHHHHHHHHHHHhccCC------CCCCChHHHHHHHHHHHHHHHHHH
Q 032324           24 HKADLSISAKERKEKLGERIIALQQLVSP------YGKTDTASVLWEAMEYIQFLHEQV   76 (143)
Q Consensus        24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~------~~K~dkAsvL~eAI~YIk~Lq~qv   76 (143)
                      .+..|+.+||+||++||+.|.+|+.|||.      ..|++|++||..||+||++||++.
T Consensus         5 rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            45679999999999999999999999995      348999999999999999999753